Query 004103
Match_columns 773
No_of_seqs 458 out of 3126
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 17:36:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0386 Chromatin remodeling c 100.0 1E-135 3E-140 1146.7 38.3 717 36-769 375-1111(1157)
2 KOG0385 Chromatin remodeling c 100.0 4E-120 8E-125 996.8 47.7 510 43-563 155-671 (971)
3 KOG0384 Chromodomain-helicase 100.0 7E-109 2E-113 945.8 39.1 505 44-562 359-888 (1373)
4 PLN03142 Probable chromatin-re 100.0 4.3E-97 9E-102 881.2 55.3 570 43-631 158-734 (1033)
5 KOG0391 SNF2 family DNA-depend 100.0 7.1E-97 2E-101 831.3 36.6 471 47-522 608-1416(1958)
6 KOG0389 SNF2 family DNA-depend 100.0 1.1E-95 2E-100 806.7 41.9 472 44-519 387-914 (941)
7 KOG0388 SNF2 family DNA-depend 100.0 4.1E-94 8.9E-99 780.0 32.5 465 43-521 556-1182(1185)
8 KOG0387 Transcription-coupled 100.0 1.9E-89 4.2E-94 758.4 36.9 462 54-518 204-683 (923)
9 KOG0392 SNF2 family DNA-depend 100.0 1.1E-83 2.3E-88 734.4 42.6 460 54-518 974-1479(1549)
10 KOG0390 DNA repair protein, SN 100.0 1.5E-72 3.3E-77 642.4 44.4 464 53-521 236-735 (776)
11 KOG1015 Transcription regulato 100.0 4E-69 8.7E-74 598.8 34.7 533 54-595 667-1380(1567)
12 KOG1002 Nucleotide excision re 100.0 1.2E-67 2.7E-72 556.1 30.5 480 25-516 154-772 (791)
13 KOG4439 RNA polymerase II tran 100.0 3.6E-66 7.8E-71 565.3 31.6 468 42-528 313-895 (901)
14 COG0553 HepA Superfamily II DN 100.0 6.6E-65 1.4E-69 623.6 38.1 471 44-516 326-845 (866)
15 KOG1000 Chromatin remodeling p 100.0 1.9E-58 4.1E-63 487.8 32.7 418 55-513 198-623 (689)
16 KOG1016 Predicted DNA helicase 100.0 9.8E-58 2.1E-62 499.3 26.5 470 54-527 253-883 (1387)
17 PRK04914 ATP-dependent helicas 100.0 1.8E-55 4E-60 523.6 35.6 429 54-517 151-629 (956)
18 KOG0383 Predicted helicase [Ge 100.0 1.3E-54 2.8E-59 491.6 12.9 390 44-447 282-696 (696)
19 KOG1001 Helicase-like transcri 100.0 5.2E-49 1.1E-53 452.9 20.1 439 58-515 135-672 (674)
20 TIGR00603 rad25 DNA repair hel 100.0 2.4E-41 5.3E-46 390.4 34.6 342 53-503 253-617 (732)
21 PF00176 SNF2_N: SNF2 family N 100.0 2.8E-42 6E-47 370.7 22.0 277 59-348 1-299 (299)
22 PRK13766 Hef nuclease; Provisi 100.0 4.2E-36 9.1E-41 363.3 34.9 433 54-510 14-496 (773)
23 COG1111 MPH1 ERCC4-like helica 100.0 7.5E-34 1.6E-38 305.4 34.6 428 54-515 14-503 (542)
24 PHA02558 uvsW UvsW helicase; P 100.0 2E-31 4.3E-36 305.8 33.1 336 54-494 113-456 (501)
25 COG1061 SSL2 DNA or RNA helica 100.0 2.1E-31 4.4E-36 300.1 30.4 362 53-504 34-405 (442)
26 KOG0298 DEAD box-containing he 100.0 1.1E-32 2.4E-37 319.9 16.3 261 72-348 372-691 (1394)
27 TIGR00614 recQ_fam ATP-depende 100.0 1E-28 2.2E-33 281.9 31.8 306 54-487 10-329 (470)
28 PTZ00110 helicase; Provisional 100.0 1.8E-28 3.9E-33 283.5 32.1 321 54-493 151-484 (545)
29 PRK11776 ATP-dependent RNA hel 100.0 5.4E-28 1.2E-32 275.8 32.4 316 54-493 25-349 (460)
30 PRK11192 ATP-dependent RNA hel 100.0 2.2E-27 4.7E-32 269.0 30.6 314 54-486 22-347 (434)
31 PRK10590 ATP-dependent RNA hel 100.0 1.5E-27 3.2E-32 271.4 29.2 312 54-486 22-347 (456)
32 PLN00206 DEAD-box ATP-dependen 100.0 2.6E-27 5.7E-32 272.9 30.7 316 54-493 142-475 (518)
33 PRK04837 ATP-dependent RNA hel 100.0 1.5E-27 3.3E-32 269.3 27.5 316 54-492 29-361 (423)
34 KOG0354 DEAD-box like helicase 100.0 1.5E-26 3.3E-31 262.7 35.1 418 53-501 60-535 (746)
35 PRK04537 ATP-dependent RNA hel 100.0 4E-27 8.6E-32 273.3 31.1 316 54-492 30-363 (572)
36 KOG0330 ATP-dependent RNA heli 100.0 6.1E-28 1.3E-32 250.9 21.3 324 53-502 81-414 (476)
37 KOG0331 ATP-dependent RNA heli 100.0 2.2E-27 4.8E-32 262.3 27.1 313 54-483 112-440 (519)
38 PRK11057 ATP-dependent DNA hel 100.0 7.7E-27 1.7E-31 273.5 32.8 302 54-485 24-337 (607)
39 PRK01297 ATP-dependent RNA hel 100.0 8.2E-27 1.8E-31 267.0 31.4 318 54-493 108-442 (475)
40 PRK11634 ATP-dependent RNA hel 100.0 1.9E-26 4.1E-31 269.3 34.9 325 54-503 27-360 (629)
41 TIGR01389 recQ ATP-dependent D 100.0 1.3E-26 2.8E-31 272.0 33.1 302 54-485 12-325 (591)
42 PLN03137 ATP-dependent DNA hel 100.0 5.6E-27 1.2E-31 277.3 27.7 309 54-488 459-784 (1195)
43 PTZ00424 helicase 45; Provisio 100.0 2.8E-26 6E-31 257.4 29.6 318 54-493 49-374 (401)
44 COG0513 SrmB Superfamily II DN 99.9 2.4E-25 5.2E-30 255.3 31.1 331 54-506 50-392 (513)
45 KOG1123 RNA polymerase II tran 99.9 3E-25 6.5E-30 236.2 23.8 377 54-544 301-713 (776)
46 TIGR00643 recG ATP-dependent D 99.9 2.3E-24 5E-29 253.7 33.1 304 54-485 234-560 (630)
47 TIGR03817 DECH_helic helicase/ 99.9 3E-24 6.6E-29 255.4 33.3 331 55-501 36-394 (742)
48 PRK13767 ATP-dependent helicas 99.9 5.7E-24 1.2E-28 257.9 32.7 326 54-488 31-395 (876)
49 PRK10917 ATP-dependent DNA hel 99.9 6.7E-24 1.4E-28 251.4 31.3 306 54-490 260-586 (681)
50 TIGR00580 mfd transcription-re 99.9 5.4E-24 1.2E-28 255.8 30.0 307 53-492 449-769 (926)
51 PRK10689 transcription-repair 99.9 1.9E-23 4.1E-28 256.1 29.6 300 54-484 599-912 (1147)
52 PRK02362 ski2-like helicase; P 99.9 1.5E-22 3.3E-27 243.0 31.4 320 54-492 22-396 (737)
53 PRK11448 hsdR type I restricti 99.9 8.9E-23 1.9E-27 249.4 29.3 352 54-491 412-816 (1123)
54 KOG0338 ATP-dependent RNA heli 99.9 3E-22 6.6E-27 214.3 26.5 326 51-500 199-538 (691)
55 COG0514 RecQ Superfamily II DN 99.9 2.4E-22 5.2E-27 226.4 25.3 306 54-487 16-333 (590)
56 PRK01172 ski2-like helicase; P 99.9 5.7E-22 1.2E-26 236.3 27.9 312 54-491 21-376 (674)
57 TIGR01587 cas3_core CRISPR-ass 99.9 2.3E-21 5E-26 214.3 30.2 314 77-506 2-354 (358)
58 KOG0340 ATP-dependent RNA heli 99.9 5.5E-22 1.2E-26 204.5 23.0 312 54-483 28-353 (442)
59 KOG0333 U5 snRNP-like RNA heli 99.9 3.8E-22 8.3E-27 214.4 22.3 342 54-493 266-624 (673)
60 KOG0335 ATP-dependent RNA heli 99.9 3E-22 6.5E-27 218.1 21.5 313 54-488 95-441 (482)
61 PRK00254 ski2-like helicase; P 99.9 3.2E-21 6.9E-26 231.0 31.5 317 54-494 22-389 (720)
62 KOG0345 ATP-dependent RNA heli 99.9 8.7E-22 1.9E-26 209.5 23.0 315 54-489 27-362 (567)
63 KOG0328 Predicted ATP-dependen 99.9 1.8E-22 3.9E-27 202.0 16.7 314 55-493 49-373 (400)
64 KOG0342 ATP-dependent RNA heli 99.9 1.8E-21 4E-26 208.6 20.1 320 54-492 103-436 (543)
65 KOG0350 DEAD-box ATP-dependent 99.9 7.3E-22 1.6E-26 211.3 16.9 353 55-493 159-540 (620)
66 KOG0348 ATP-dependent RNA heli 99.9 1.5E-20 3.3E-25 202.4 25.5 330 55-486 159-549 (708)
67 COG1201 Lhr Lhr-like helicases 99.9 1.1E-20 2.4E-25 220.2 26.5 328 54-503 21-370 (814)
68 TIGR02621 cas3_GSU0051 CRISPR- 99.9 8.1E-21 1.8E-25 222.5 25.2 314 53-489 13-390 (844)
69 KOG0347 RNA helicase [RNA proc 99.9 2.9E-22 6.2E-27 216.2 11.1 388 26-516 177-614 (731)
70 KOG0343 RNA Helicase [RNA proc 99.9 3.5E-20 7.6E-25 200.2 23.8 331 54-507 90-435 (758)
71 KOG0341 DEAD-box protein abstr 99.9 2.1E-21 4.5E-26 201.4 13.8 316 55-494 192-529 (610)
72 KOG0339 ATP-dependent RNA heli 99.9 4.3E-20 9.3E-25 197.6 22.7 316 55-494 245-576 (731)
73 TIGR03714 secA2 accessory Sec 99.9 2.7E-19 5.9E-24 207.8 31.2 391 55-485 68-531 (762)
74 PRK09401 reverse gyrase; Revie 99.9 2.1E-19 4.6E-24 221.2 31.0 293 53-479 78-432 (1176)
75 PRK09751 putative ATP-dependen 99.8 1.1E-19 2.4E-24 224.3 27.5 96 380-478 243-371 (1490)
76 TIGR00348 hsdR type I site-spe 99.8 6.3E-19 1.4E-23 208.3 30.3 363 54-491 237-649 (667)
77 COG1200 RecG RecG-like helicas 99.8 4.6E-19 1E-23 199.4 26.4 303 54-484 261-584 (677)
78 KOG4284 DEAD box protein [Tran 99.8 9.7E-20 2.1E-24 199.4 18.3 321 55-492 47-379 (980)
79 KOG0336 ATP-dependent RNA heli 99.8 1.1E-19 2.3E-24 190.0 16.9 309 55-483 242-564 (629)
80 PRK09200 preprotein translocas 99.8 2.6E-18 5.7E-23 201.5 29.8 118 362-484 409-534 (790)
81 PHA02653 RNA helicase NPH-II; 99.8 1.7E-18 3.7E-23 202.0 26.6 329 47-495 152-516 (675)
82 TIGR03158 cas3_cyano CRISPR-as 99.8 4.3E-18 9.3E-23 187.5 28.1 85 380-476 271-357 (357)
83 COG4096 HsdR Type I site-speci 99.8 5.2E-19 1.1E-23 201.1 20.9 356 50-491 160-546 (875)
84 PRK12898 secA preprotein trans 99.8 9.8E-18 2.1E-22 192.9 31.3 130 363-502 455-592 (656)
85 KOG0332 ATP-dependent RNA heli 99.8 4.2E-19 9.2E-24 184.3 17.1 305 55-482 112-434 (477)
86 COG1202 Superfamily II helicas 99.8 1.8E-18 3.8E-23 187.9 22.3 316 54-493 215-553 (830)
87 TIGR00963 secA preprotein tran 99.8 1.9E-18 4.1E-23 199.7 23.6 118 364-486 388-512 (745)
88 COG4098 comFA Superfamily II D 99.8 7E-17 1.5E-21 166.5 30.9 347 11-491 58-414 (441)
89 PRK05580 primosome assembly pr 99.8 1.8E-17 3.9E-22 196.1 30.3 359 54-492 143-550 (679)
90 COG1205 Distinct helicase fami 99.8 1.4E-17 3E-22 199.5 29.3 333 55-503 70-432 (851)
91 COG1204 Superfamily II helicas 99.8 6.5E-18 1.4E-22 199.7 25.9 318 55-490 31-405 (766)
92 KOG0344 ATP-dependent RNA heli 99.8 1.1E-18 2.4E-23 191.4 16.3 311 54-483 157-487 (593)
93 TIGR01054 rgy reverse gyrase. 99.8 1.5E-17 3.1E-22 205.3 28.0 278 53-462 76-408 (1171)
94 COG4889 Predicted helicase [Ge 99.8 8.6E-18 1.9E-22 188.9 23.0 362 54-483 160-577 (1518)
95 PRK14701 reverse gyrase; Provi 99.8 2.9E-17 6.3E-22 206.5 28.5 297 53-481 77-446 (1638)
96 TIGR00595 priA primosomal prot 99.8 5.7E-17 1.2E-21 185.4 27.0 293 78-491 1-381 (505)
97 KOG0346 RNA helicase [RNA proc 99.8 4.2E-17 9.2E-22 172.6 22.8 311 55-492 41-409 (569)
98 KOG0326 ATP-dependent RNA heli 99.8 5.4E-19 1.2E-23 179.8 8.1 312 55-492 107-428 (459)
99 TIGR01970 DEAH_box_HrpB ATP-de 99.8 9.3E-17 2E-21 191.7 26.1 107 381-493 209-336 (819)
100 PRK09694 helicase Cas3; Provis 99.8 3.3E-16 7.2E-21 187.1 30.4 336 53-481 284-665 (878)
101 KOG0351 ATP-dependent DNA heli 99.7 5.6E-17 1.2E-21 193.1 20.4 313 54-491 263-592 (941)
102 PRK11664 ATP-dependent RNA hel 99.7 1.7E-16 3.7E-21 189.8 24.3 109 380-494 211-340 (812)
103 KOG0353 ATP-dependent DNA heli 99.7 2.5E-16 5.4E-21 163.3 19.9 317 54-491 93-467 (695)
104 KOG0334 RNA helicase [RNA proc 99.7 8.5E-17 1.8E-21 187.1 17.4 317 54-492 386-719 (997)
105 cd00079 HELICc Helicase superf 99.7 4.5E-17 9.7E-22 152.4 12.1 120 365-487 12-131 (131)
106 PF04851 ResIII: Type III rest 99.7 4.5E-17 9.7E-22 161.7 12.8 156 54-217 2-183 (184)
107 COG1197 Mfd Transcription-repa 99.7 1.6E-15 3.4E-20 179.8 26.8 308 54-492 593-912 (1139)
108 PRK13104 secA preprotein trans 99.7 2.9E-15 6.3E-20 175.7 26.3 394 53-487 80-583 (896)
109 KOG0327 Translation initiation 99.7 2.4E-16 5.2E-21 165.5 14.8 314 54-493 47-370 (397)
110 KOG0352 ATP-dependent DNA heli 99.7 2.5E-15 5.4E-20 158.4 22.2 324 57-489 22-360 (641)
111 PRK12906 secA preprotein trans 99.7 9.6E-15 2.1E-19 170.6 28.1 117 364-485 423-547 (796)
112 KOG0952 DNA/RNA helicase MER3/ 99.7 1E-14 2.3E-19 168.5 23.4 309 70-493 122-491 (1230)
113 PRK12904 preprotein translocas 99.6 6.6E-14 1.4E-18 164.3 30.0 392 53-488 79-570 (830)
114 KOG0337 ATP-dependent RNA heli 99.6 1.7E-15 3.7E-20 159.9 14.1 316 55-493 43-368 (529)
115 TIGR00631 uvrb excinuclease AB 99.6 3E-14 6.6E-19 167.0 25.6 125 364-494 425-554 (655)
116 PRK11131 ATP-dependent RNA hel 99.6 3E-14 6.6E-19 173.8 22.8 108 380-495 285-413 (1294)
117 PF00271 Helicase_C: Helicase 99.6 1.2E-15 2.6E-20 130.1 7.6 78 399-479 1-78 (78)
118 smart00487 DEXDc DEAD-like hel 99.6 1.6E-14 3.4E-19 144.1 16.8 165 53-226 6-180 (201)
119 PRK05298 excinuclease ABC subu 99.6 1.6E-12 3.5E-17 153.5 35.7 124 364-493 429-557 (652)
120 PRK13107 preprotein translocas 99.6 5.1E-13 1.1E-17 156.5 29.0 120 363-487 431-587 (908)
121 cd00046 DEXDc DEAD-like helica 99.6 3.4E-14 7.3E-19 133.3 13.0 136 76-216 2-144 (144)
122 COG1203 CRISPR-associated heli 99.5 5.2E-13 1.1E-17 159.8 24.2 346 54-508 194-567 (733)
123 COG0556 UvrB Helicase subunit 99.5 2.9E-12 6.2E-17 139.6 27.3 132 371-506 436-572 (663)
124 TIGR01967 DEAH_box_HrpA ATP-de 99.5 3.3E-13 7.1E-18 165.4 22.5 108 380-495 278-406 (1283)
125 KOG0951 RNA helicase BRR2, DEA 99.5 7.2E-13 1.6E-17 155.1 19.8 302 55-480 309-689 (1674)
126 PF00270 DEAD: DEAD/DEAH box h 99.5 4.2E-13 9E-18 131.6 14.5 158 57-223 1-168 (169)
127 smart00490 HELICc helicase sup 99.5 9.8E-14 2.1E-18 118.5 8.3 81 396-479 2-82 (82)
128 PRK12899 secA preprotein trans 99.5 1.9E-11 4.2E-16 143.7 29.1 120 363-487 550-677 (970)
129 PRK12900 secA preprotein trans 99.5 4.6E-12 9.9E-17 149.2 22.8 116 364-484 581-704 (1025)
130 cd00268 DEADc DEAD-box helicas 99.4 1.7E-12 3.7E-17 131.6 16.2 155 55-217 21-185 (203)
131 PRK12326 preprotein translocas 99.4 1.5E-10 3.3E-15 133.1 29.4 387 53-487 76-543 (764)
132 KOG0947 Cytoplasmic exosomal R 99.3 5.9E-10 1.3E-14 128.4 28.3 356 52-492 294-722 (1248)
133 TIGR01407 dinG_rel DnaQ family 99.3 1.4E-10 3.1E-15 141.7 24.9 109 370-484 662-807 (850)
134 COG1110 Reverse gyrase [DNA re 99.3 6.8E-10 1.5E-14 129.4 28.6 322 53-462 80-416 (1187)
135 KOG0329 ATP-dependent RNA heli 99.3 1.7E-11 3.7E-16 122.0 10.9 128 55-192 64-199 (387)
136 PRK13103 secA preprotein trans 99.3 1.6E-09 3.4E-14 127.7 28.3 121 363-488 431-588 (913)
137 COG1198 PriA Primosomal protei 99.3 1.8E-09 3.8E-14 126.4 27.4 155 54-217 197-360 (730)
138 COG4581 Superfamily II RNA hel 99.2 2E-10 4.4E-15 136.9 19.3 159 52-248 116-282 (1041)
139 PF11496 HDA2-3: Class II hist 99.2 1.8E-10 4E-15 122.5 16.2 208 294-502 4-254 (297)
140 KOG0948 Nuclear exosomal RNA h 99.2 3.1E-10 6.7E-15 127.7 15.4 358 54-498 128-543 (1041)
141 PRK12903 secA preprotein trans 99.2 1.3E-08 2.8E-13 119.0 28.2 120 363-487 408-535 (925)
142 COG0610 Type I site-specific r 99.2 2.9E-09 6.2E-14 130.3 23.6 158 56-221 249-418 (962)
143 PF14619 SnAC: Snf2-ATP coupli 99.0 5.1E-11 1.1E-15 99.7 1.5 61 578-639 14-74 (74)
144 KOG0349 Putative DEAD-box RNA 99.0 2.6E-09 5.6E-14 113.5 13.0 95 381-478 505-602 (725)
145 TIGR00604 rad3 DNA repair heli 99.0 4.8E-08 1E-12 117.4 25.4 73 54-126 9-82 (705)
146 PF13872 AAA_34: P-loop contai 99.0 1.6E-08 3.5E-13 105.9 16.5 231 52-312 34-302 (303)
147 PRK08074 bifunctional ATP-depe 99.0 1.2E-07 2.7E-12 116.7 27.0 96 368-466 738-839 (928)
148 KOG0950 DNA polymerase theta/e 99.0 1.3E-08 2.8E-13 118.4 17.1 153 55-220 223-391 (1008)
149 TIGR03117 cas_csf4 CRISPR-asso 99.0 3.9E-07 8.4E-12 106.1 28.9 68 60-128 2-70 (636)
150 CHL00122 secA preprotein trans 98.9 3.5E-07 7.5E-12 107.9 27.4 85 363-451 406-491 (870)
151 KOG0949 Predicted helicase, DE 98.9 8.6E-08 1.9E-12 111.1 20.3 164 54-229 510-682 (1330)
152 COG1199 DinG Rad3-related DNA 98.9 3.6E-07 7.9E-12 109.4 26.6 103 378-485 476-611 (654)
153 PRK07246 bifunctional ATP-depe 98.9 5.4E-07 1.2E-11 109.3 27.9 89 369-463 635-725 (820)
154 TIGR00596 rad1 DNA repair prot 98.9 6E-08 1.3E-12 115.9 17.9 75 156-231 7-89 (814)
155 PRK12901 secA preprotein trans 98.8 8.2E-07 1.8E-11 105.7 26.1 120 363-487 610-737 (1112)
156 PRK12902 secA preprotein trans 98.7 2.8E-06 6.1E-11 100.2 26.5 85 363-451 421-506 (939)
157 KOG0922 DEAH-box RNA helicase 98.7 3.7E-06 7.9E-11 95.4 23.9 112 381-495 258-392 (674)
158 COG1643 HrpA HrpA-like helicas 98.7 1.7E-06 3.7E-11 103.1 22.3 111 380-496 258-390 (845)
159 KOG0920 ATP-dependent RNA heli 98.7 1.4E-06 3E-11 103.7 21.3 127 365-497 395-548 (924)
160 KOG1513 Nuclear helicase MOP-3 98.7 3.2E-06 6.9E-11 96.3 22.5 89 425-516 851-947 (1300)
161 PRK11747 dinG ATP-dependent DN 98.6 8.3E-06 1.8E-10 97.7 27.4 89 368-463 521-616 (697)
162 PRK15483 type III restriction- 98.6 2.6E-07 5.7E-12 110.5 13.3 169 75-251 60-277 (986)
163 PF07652 Flavi_DEAD: Flaviviru 98.5 2.2E-07 4.7E-12 87.1 5.9 127 74-217 4-137 (148)
164 KOG0924 mRNA splicing factor A 98.5 1.5E-05 3.2E-10 89.9 21.1 115 383-500 565-704 (1042)
165 PF02399 Herpes_ori_bp: Origin 98.5 6.9E-06 1.5E-10 96.0 19.4 112 366-488 268-385 (824)
166 PRK14873 primosome assembly pr 98.4 2.3E-05 4.9E-10 92.6 22.8 127 83-217 169-304 (665)
167 TIGR02562 cas3_yersinia CRISPR 98.4 0.00019 4E-09 86.5 29.4 53 434-489 838-892 (1110)
168 smart00488 DEXDc2 DEAD-like he 98.4 3.9E-06 8.4E-11 89.9 14.2 74 54-127 7-84 (289)
169 smart00489 DEXDc3 DEAD-like he 98.4 3.9E-06 8.4E-11 89.9 14.2 74 54-127 7-84 (289)
170 KOG0926 DEAH-box RNA helicase 98.4 6.4E-06 1.4E-10 94.3 16.1 110 67-189 264-383 (1172)
171 KOG0923 mRNA splicing factor A 98.4 1.9E-05 4.1E-10 88.9 18.6 106 381-494 473-607 (902)
172 PF13871 Helicase_C_4: Helicas 98.3 9.5E-07 2.1E-11 92.5 7.0 94 422-518 52-153 (278)
173 KOG4150 Predicted ATP-dependen 98.2 2.4E-05 5.1E-10 86.5 15.3 116 363-481 507-630 (1034)
174 PF13086 AAA_11: AAA domain; P 98.1 1.4E-05 3E-10 82.2 10.6 68 55-126 1-75 (236)
175 KOG0953 Mitochondrial RNA heli 98.0 1.3E-05 2.8E-10 88.8 8.8 107 379-489 356-473 (700)
176 COG0653 SecA Preprotein transl 97.9 0.00033 7.1E-09 82.9 18.1 114 363-481 411-535 (822)
177 KOG0951 RNA helicase BRR2, DEA 97.7 0.00083 1.8E-08 81.0 16.4 110 70-194 1155-1269(1674)
178 KOG0925 mRNA splicing factor A 97.7 0.0025 5.5E-08 70.0 18.6 63 435-497 314-391 (699)
179 COG3587 Restriction endonuclea 97.6 0.00034 7.3E-09 81.5 11.6 136 72-216 72-242 (985)
180 PF02562 PhoH: PhoH-like prote 97.6 0.00016 3.4E-09 73.1 7.8 148 56-222 5-161 (205)
181 PRK10536 hypothetical protein; 97.5 0.00049 1.1E-08 71.5 9.9 142 55-221 59-217 (262)
182 KOG1802 RNA helicase nonsense 97.5 0.00094 2E-08 75.7 11.9 73 54-134 409-482 (935)
183 KOG1803 DNA helicase [Replicat 97.3 0.00093 2E-08 75.6 9.3 152 54-218 184-393 (649)
184 TIGR00376 DNA helicase, putati 97.3 0.0043 9.4E-08 73.7 15.3 67 54-126 156-223 (637)
185 PF13307 Helicase_C_2: Helicas 97.2 0.00099 2.2E-08 65.5 7.9 98 378-482 6-141 (167)
186 PF12340 DUF3638: Protein of u 97.2 0.004 8.6E-08 63.6 11.7 114 53-169 21-143 (229)
187 PF13604 AAA_30: AAA domain; P 97.2 0.0051 1.1E-07 62.1 12.5 123 55-218 1-132 (196)
188 PF13401 AAA_22: AAA domain; P 97.2 0.0013 2.7E-08 61.3 7.6 115 74-216 4-125 (131)
189 PF07517 SecA_DEAD: SecA DEAD- 97.1 0.0022 4.8E-08 67.4 9.8 120 53-190 75-209 (266)
190 PF09848 DUF2075: Uncharacteri 97.1 0.0016 3.4E-08 72.1 8.8 89 78-192 5-97 (352)
191 KOG1132 Helicase of the DEAD s 96.9 0.004 8.6E-08 73.2 10.4 89 381-470 561-663 (945)
192 cd00009 AAA The AAA+ (ATPases 96.6 0.025 5.5E-07 52.7 11.9 39 74-115 19-57 (151)
193 TIGR01447 recD exodeoxyribonuc 96.6 0.01 2.3E-07 69.6 10.9 139 58-218 148-297 (586)
194 KOG1131 RNA polymerase II tran 96.6 0.01 2.2E-07 65.9 9.6 67 47-113 8-74 (755)
195 PRK11773 uvrD DNA-dependent he 96.5 0.18 4E-06 61.2 20.8 67 55-127 9-77 (721)
196 COG0553 HepA Superfamily II DN 96.4 0.0094 2E-07 73.8 9.0 180 54-238 83-289 (866)
197 KOG1133 Helicase of the DEAD s 96.3 0.22 4.9E-06 57.6 18.7 79 382-464 630-721 (821)
198 TIGR01448 recD_rel helicase, p 96.3 0.028 6E-07 67.9 12.0 134 53-218 321-454 (720)
199 TIGR02881 spore_V_K stage V sp 96.1 0.023 5E-07 60.0 9.3 27 75-101 43-69 (261)
200 PRK10875 recD exonuclease V su 96.1 0.026 5.6E-07 66.6 10.3 141 56-218 153-303 (615)
201 PRK14956 DNA polymerase III su 96.0 0.04 8.7E-07 62.6 11.0 42 60-101 23-67 (484)
202 PRK04296 thymidine kinase; Pro 96.0 0.027 5.8E-07 56.6 8.6 34 77-113 5-38 (190)
203 PRK06526 transposase; Provisio 96.0 0.026 5.7E-07 59.3 8.6 29 73-101 97-125 (254)
204 smart00382 AAA ATPases associa 96.0 0.033 7.1E-07 51.3 8.5 43 75-120 3-45 (148)
205 TIGR01073 pcrA ATP-dependent D 95.8 0.71 1.5E-05 56.3 21.4 54 55-114 4-58 (726)
206 PRK12723 flagellar biosynthesi 95.8 0.13 2.8E-06 57.3 13.7 128 77-231 177-312 (388)
207 PRK09112 DNA polymerase III su 95.7 0.096 2.1E-06 57.7 11.8 144 60-216 28-181 (351)
208 PRK07003 DNA polymerase III su 95.5 0.081 1.8E-06 62.8 10.8 48 177-224 118-166 (830)
209 PRK08181 transposase; Validate 95.4 0.13 2.7E-06 54.6 11.3 47 55-101 87-133 (269)
210 PRK14949 DNA polymerase III su 95.4 0.073 1.6E-06 64.3 10.4 42 177-218 118-160 (944)
211 PRK07764 DNA polymerase III su 95.4 0.14 3.1E-06 62.4 13.1 25 77-101 40-64 (824)
212 COG3421 Uncharacterized protei 95.3 0.016 3.4E-07 65.6 4.2 105 81-190 4-124 (812)
213 PLN03025 replication factor C 95.2 0.15 3.2E-06 55.6 11.4 49 178-226 99-148 (319)
214 COG1875 NYN ribonuclease and A 95.2 0.079 1.7E-06 57.2 8.7 155 47-219 219-390 (436)
215 PRK06835 DNA replication prote 95.1 0.28 6E-06 53.6 12.9 48 54-101 159-210 (329)
216 PRK12323 DNA polymerase III su 95.0 0.13 2.8E-06 60.3 10.6 23 78-100 42-64 (700)
217 CHL00181 cbbX CbbX; Provisiona 95.0 0.075 1.6E-06 57.0 8.2 27 75-101 60-86 (287)
218 PRK14960 DNA polymerase III su 94.9 0.15 3.3E-06 59.9 10.7 23 78-100 41-63 (702)
219 PF13245 AAA_19: Part of AAA d 94.9 0.094 2E-06 44.3 6.8 50 75-124 11-62 (76)
220 TIGR02880 cbbX_cfxQ probable R 94.8 0.081 1.8E-06 56.7 7.8 27 75-101 59-85 (284)
221 PF00448 SRP54: SRP54-type pro 94.8 0.2 4.4E-06 50.5 10.3 130 78-231 5-140 (196)
222 smart00492 HELICc3 helicase su 94.8 0.15 3.2E-06 48.6 8.6 54 407-463 24-79 (141)
223 PF06862 DUF1253: Protein of u 94.7 0.45 9.8E-06 53.6 13.4 127 364-492 280-414 (442)
224 PRK05707 DNA polymerase III su 94.7 0.23 5.1E-06 54.2 11.0 46 55-101 3-49 (328)
225 PRK07994 DNA polymerase III su 94.7 0.31 6.7E-06 57.7 12.7 25 77-101 41-65 (647)
226 PRK11889 flhF flagellar biosyn 94.6 0.68 1.5E-05 51.4 14.1 124 77-231 244-377 (436)
227 smart00491 HELICc2 helicase su 94.6 0.13 2.9E-06 49.0 7.7 69 394-463 4-80 (142)
228 PF13177 DNA_pol3_delta2: DNA 94.4 0.53 1.1E-05 45.9 11.8 139 60-224 2-149 (162)
229 KOG1805 DNA replication helica 94.3 0.16 3.4E-06 60.9 9.1 148 55-218 669-831 (1100)
230 PHA02544 44 clamp loader, smal 94.3 0.35 7.6E-06 52.5 11.5 41 178-218 100-142 (316)
231 TIGR02639 ClpA ATP-dependent C 94.2 12 0.00025 45.8 25.4 27 74-100 203-229 (731)
232 PRK12402 replication factor C 94.2 0.15 3.2E-06 55.8 8.3 37 64-100 24-62 (337)
233 TIGR03015 pepcterm_ATPase puta 94.2 0.45 9.6E-06 50.2 11.7 42 57-98 25-67 (269)
234 PRK14958 DNA polymerase III su 94.1 0.49 1.1E-05 54.9 12.7 42 60-101 21-65 (509)
235 PRK07952 DNA replication prote 94.1 0.6 1.3E-05 48.8 12.1 62 58-126 79-144 (244)
236 KOG0991 Replication factor C, 94.1 0.066 1.4E-06 54.2 4.6 29 72-100 46-74 (333)
237 PRK14974 cell division protein 94.1 0.69 1.5E-05 50.6 13.0 34 77-113 143-176 (336)
238 PRK14961 DNA polymerase III su 94.0 0.29 6.2E-06 54.4 10.3 40 60-99 21-63 (363)
239 PRK14962 DNA polymerase III su 93.9 0.26 5.7E-06 56.5 9.8 43 58-100 20-62 (472)
240 PRK14964 DNA polymerase III su 93.9 0.86 1.9E-05 52.4 13.8 117 76-217 37-156 (491)
241 PRK05703 flhF flagellar biosyn 93.9 0.66 1.4E-05 52.6 12.8 128 77-233 224-359 (424)
242 TIGR03420 DnaA_homol_Hda DnaA 93.8 0.35 7.6E-06 49.5 9.7 27 74-100 38-64 (226)
243 PRK08451 DNA polymerase III su 93.7 0.28 6E-06 56.9 9.6 24 78-101 40-63 (535)
244 TIGR02928 orc1/cdc6 family rep 93.7 0.9 2E-05 50.3 13.4 46 56-101 19-67 (365)
245 PRK14952 DNA polymerase III su 93.7 0.81 1.8E-05 53.8 13.4 42 60-101 18-62 (584)
246 PRK08084 DNA replication initi 93.6 0.63 1.4E-05 48.3 11.3 26 75-100 46-71 (235)
247 PRK14957 DNA polymerase III su 93.5 0.33 7.3E-06 56.5 9.9 24 77-100 41-64 (546)
248 KOG0989 Replication factor C, 93.5 0.25 5.4E-06 52.3 7.7 42 59-100 40-83 (346)
249 PRK09111 DNA polymerase III su 93.4 0.68 1.5E-05 54.7 12.3 42 60-101 29-73 (598)
250 PF13173 AAA_14: AAA domain 93.4 0.41 8.9E-06 44.6 8.6 40 178-218 61-100 (128)
251 PRK10917 ATP-dependent DNA hel 93.4 0.8 1.7E-05 55.3 13.1 97 363-462 292-393 (681)
252 PRK05580 primosome assembly pr 93.3 1 2.2E-05 54.3 13.8 95 363-461 172-267 (679)
253 PRK08116 hypothetical protein; 93.3 0.78 1.7E-05 48.7 11.4 41 75-118 115-155 (268)
254 PRK07940 DNA polymerase III su 93.2 0.75 1.6E-05 51.6 11.7 25 77-101 39-63 (394)
255 PF05621 TniB: Bacterial TniB 93.2 0.91 2E-05 48.5 11.5 46 171-216 138-189 (302)
256 PRK06871 DNA polymerase III su 93.1 0.82 1.8E-05 49.8 11.6 48 55-102 2-52 (325)
257 PRK14959 DNA polymerase III su 93.1 0.57 1.2E-05 55.1 11.0 24 77-100 41-64 (624)
258 PRK06645 DNA polymerase III su 93.0 0.65 1.4E-05 53.7 11.1 42 60-101 26-70 (507)
259 PRK07993 DNA polymerase III su 93.0 0.9 2E-05 49.8 11.7 47 55-101 2-51 (334)
260 PRK08769 DNA polymerase III su 93.0 1.1 2.4E-05 48.6 12.3 151 55-226 4-162 (319)
261 PRK08058 DNA polymerase III su 92.9 1.1 2.3E-05 49.2 12.3 131 59-215 10-148 (329)
262 PRK06921 hypothetical protein; 92.8 0.75 1.6E-05 48.7 10.5 28 74-101 117-144 (266)
263 COG0470 HolB ATPase involved i 92.7 0.74 1.6E-05 49.8 10.7 116 77-215 27-147 (325)
264 PRK07471 DNA polymerase III su 92.6 1.2 2.6E-05 49.4 12.3 142 60-216 24-181 (365)
265 PRK14969 DNA polymerase III su 92.5 1 2.2E-05 52.6 11.9 23 78-100 42-64 (527)
266 PRK08903 DnaA regulatory inact 92.5 0.84 1.8E-05 46.9 10.2 28 73-100 41-68 (227)
267 PRK14955 DNA polymerase III su 92.4 2.3 4.9E-05 47.9 14.3 41 60-100 21-64 (397)
268 TIGR02768 TraA_Ti Ti-type conj 92.4 0.73 1.6E-05 56.1 11.0 126 53-218 350-478 (744)
269 PRK14951 DNA polymerase III su 92.4 0.88 1.9E-05 53.8 11.3 42 60-101 21-65 (618)
270 PRK14963 DNA polymerase III su 92.4 0.82 1.8E-05 53.0 10.9 42 60-101 19-63 (504)
271 PRK08691 DNA polymerase III su 92.4 0.89 1.9E-05 54.0 11.2 25 77-101 41-65 (709)
272 PRK06090 DNA polymerase III su 92.3 1.7 3.6E-05 47.3 12.5 148 55-227 3-158 (319)
273 PRK14088 dnaA chromosomal repl 92.3 2 4.3E-05 49.0 13.8 26 76-101 132-157 (440)
274 PTZ00112 origin recognition co 92.2 1.7 3.6E-05 52.7 13.1 53 46-101 752-808 (1164)
275 PF00580 UvrD-helicase: UvrD/R 92.2 0.31 6.8E-06 52.2 6.9 65 56-126 1-67 (315)
276 cd01124 KaiC KaiC is a circadi 92.2 1.2 2.6E-05 44.0 10.5 48 77-127 2-49 (187)
277 PRK08727 hypothetical protein; 92.1 0.73 1.6E-05 47.8 9.3 25 77-101 44-68 (233)
278 PRK14965 DNA polymerase III su 91.8 0.95 2.1E-05 53.4 10.8 24 78-101 42-65 (576)
279 PRK05642 DNA replication initi 91.8 0.95 2.1E-05 47.0 9.6 37 179-215 98-138 (234)
280 PRK04195 replication factor C 91.8 1.3 2.8E-05 51.2 11.7 51 48-98 10-63 (482)
281 PRK12377 putative replication 91.7 1.5 3.3E-05 45.9 11.0 27 75-101 102-128 (248)
282 PF05876 Terminase_GpA: Phage 91.7 0.14 3.1E-06 60.0 3.7 163 54-227 15-190 (557)
283 PRK06647 DNA polymerase III su 91.6 1.2 2.5E-05 52.4 11.1 25 77-101 41-65 (563)
284 PRK14087 dnaA chromosomal repl 91.6 1.5 3.3E-05 50.1 11.8 25 77-101 144-168 (450)
285 PRK00149 dnaA chromosomal repl 91.5 1.2 2.7E-05 50.9 11.1 25 77-101 151-175 (450)
286 cd01121 Sms Sms (bacterial rad 91.4 1.4 3.1E-05 49.0 11.0 87 77-191 85-171 (372)
287 TIGR00595 priA primosomal prot 91.4 1.4 3E-05 51.3 11.3 96 362-461 6-102 (505)
288 PF00004 AAA: ATPase family as 91.4 0.68 1.5E-05 42.6 7.3 34 78-117 2-35 (132)
289 PRK05563 DNA polymerase III su 91.3 2.4 5.1E-05 50.0 13.3 24 78-101 42-65 (559)
290 PRK06893 DNA replication initi 91.3 1.8 3.9E-05 44.7 11.1 25 77-101 42-66 (229)
291 PF06733 DEAD_2: DEAD_2; Inte 91.3 0.16 3.6E-06 50.0 3.2 38 155-192 118-159 (174)
292 cd01120 RecA-like_NTPases RecA 91.3 1.9 4.1E-05 41.0 10.6 34 78-114 3-36 (165)
293 COG3267 ExeA Type II secretory 91.2 1.4 3E-05 45.8 9.7 46 77-126 54-105 (269)
294 TIGR00362 DnaA chromosomal rep 91.2 1.7 3.7E-05 49.0 11.7 25 77-101 139-163 (405)
295 TIGR00643 recG ATP-dependent D 91.1 1.9 4.1E-05 51.6 12.5 97 363-462 266-367 (630)
296 PRK00080 ruvB Holliday junctio 90.9 3.3 7.1E-05 45.3 13.2 51 48-98 21-75 (328)
297 PRK05896 DNA polymerase III su 90.8 2.1 4.6E-05 50.2 12.0 25 77-101 41-65 (605)
298 KOG0952 DNA/RNA helicase MER3/ 90.7 0.18 3.9E-06 60.8 3.2 112 72-193 941-1061(1230)
299 PRK14722 flhF flagellar biosyn 90.7 2.4 5.2E-05 47.1 11.7 123 74-225 137-266 (374)
300 PRK14953 DNA polymerase III su 90.5 2.2 4.7E-05 49.3 11.8 41 60-100 21-64 (486)
301 PRK14086 dnaA chromosomal repl 90.5 2 4.2E-05 50.6 11.4 25 77-101 317-341 (617)
302 PHA02533 17 large terminase pr 90.5 0.74 1.6E-05 53.7 7.9 56 54-114 58-113 (534)
303 PRK00411 cdc6 cell division co 90.4 4.8 0.0001 45.0 14.3 45 57-101 35-82 (394)
304 PRK14948 DNA polymerase III su 90.4 1.3 2.8E-05 52.7 10.0 42 60-101 21-65 (620)
305 COG1419 FlhF Flagellar GTP-bin 90.3 8.1 0.00018 43.0 15.2 133 74-234 203-341 (407)
306 PRK07133 DNA polymerase III su 90.2 1.1 2.3E-05 53.8 9.0 24 78-101 44-67 (725)
307 PRK00440 rfc replication facto 90.1 3.3 7.1E-05 44.7 12.3 24 76-99 40-63 (319)
308 TIGR01075 uvrD DNA helicase II 90.0 1.2 2.7E-05 54.0 9.8 68 55-128 4-73 (715)
309 COG2256 MGS1 ATPase related to 89.9 1.3 2.9E-05 48.7 8.7 20 76-95 50-69 (436)
310 KOG0737 AAA+-type ATPase [Post 89.7 0.22 4.8E-06 53.9 2.7 51 71-127 124-174 (386)
311 TIGR00678 holB DNA polymerase 89.6 6 0.00013 39.3 12.8 25 77-101 17-41 (188)
312 PRK14950 DNA polymerase III su 89.5 2.3 5.1E-05 50.4 11.2 41 60-100 21-64 (585)
313 PRK14954 DNA polymerase III su 89.3 3.2 6.9E-05 49.3 12.0 41 60-100 21-64 (620)
314 PRK06964 DNA polymerase III su 89.2 3.6 7.8E-05 45.2 11.7 47 56-102 2-49 (342)
315 PRK09183 transposase/IS protei 89.1 2.3 4.9E-05 45.0 9.7 29 72-100 100-128 (259)
316 PRK13889 conjugal transfer rel 89.0 2.8 6E-05 52.3 11.7 129 53-219 344-473 (988)
317 PRK06731 flhF flagellar biosyn 89.0 9.9 0.00022 40.3 14.4 124 76-230 77-210 (270)
318 PRK00771 signal recognition pa 88.9 5.4 0.00012 45.4 13.1 25 77-101 98-122 (437)
319 PF05496 RuvB_N: Holliday junc 88.9 3.5 7.6E-05 42.3 10.3 21 76-96 52-72 (233)
320 KOG0921 Dosage compensation co 88.8 5.5 0.00012 47.9 13.1 120 367-492 627-773 (1282)
321 TIGR03345 VI_ClpV1 type VI sec 88.4 2.7 5.7E-05 52.1 11.0 41 60-100 192-234 (852)
322 PF00308 Bac_DnaA: Bacterial d 88.3 5.6 0.00012 40.8 11.8 37 178-214 97-137 (219)
323 COG1198 PriA Primosomal protei 88.2 1.9 4.2E-05 51.7 9.2 110 298-443 195-305 (730)
324 PRK12724 flagellar biosynthesi 88.0 4.6 0.0001 45.4 11.5 124 78-231 227-359 (432)
325 PRK12422 chromosomal replicati 88.0 2.4 5.3E-05 48.4 9.6 25 77-101 144-168 (445)
326 PTZ00293 thymidine kinase; Pro 87.9 4.8 0.0001 41.0 10.7 34 78-114 8-41 (211)
327 PF13481 AAA_25: AAA domain; P 87.7 3.8 8.3E-05 40.6 10.0 55 74-128 32-93 (193)
328 PRK13342 recombination factor 87.6 2.5 5.4E-05 47.9 9.4 22 76-97 38-59 (413)
329 COG1484 DnaC DNA replication p 87.4 1.7 3.7E-05 45.7 7.4 66 56-124 87-152 (254)
330 COG2255 RuvB Holliday junction 87.2 2.8 6E-05 44.3 8.5 23 75-97 53-75 (332)
331 TIGR03689 pup_AAA proteasome A 87.2 3.1 6.7E-05 48.1 9.9 27 73-99 215-241 (512)
332 PRK04132 replication factor C 87.1 2.2 4.7E-05 52.2 9.0 49 178-226 630-679 (846)
333 PRK06904 replicative DNA helic 87.1 14 0.0003 42.6 15.1 127 64-192 211-348 (472)
334 PRK12727 flagellar biosynthesi 87.0 10 0.00022 44.0 13.7 26 76-101 352-377 (559)
335 TIGR02397 dnaX_nterm DNA polym 86.9 2.1 4.5E-05 47.1 8.2 24 77-100 39-62 (355)
336 PHA03333 putative ATPase subun 86.9 4.6 0.0001 47.8 11.0 141 56-217 170-332 (752)
337 TIGR00708 cobA cob(I)alamin ad 86.7 2.4 5.1E-05 41.8 7.5 58 171-231 90-151 (173)
338 COG1435 Tdk Thymidine kinase [ 86.7 4.1 8.9E-05 40.7 9.1 108 78-215 8-118 (201)
339 PRK05986 cob(I)alamin adenolsy 86.1 6.8 0.00015 39.2 10.4 137 73-230 21-168 (191)
340 PRK08699 DNA polymerase III su 86.1 7.1 0.00015 42.7 11.6 46 56-101 2-48 (325)
341 PRK06305 DNA polymerase III su 86.0 6.6 0.00014 45.0 11.8 41 60-100 22-65 (451)
342 PF02456 Adeno_IVa2: Adenoviru 85.9 1.7 3.8E-05 46.1 6.3 109 77-204 90-222 (369)
343 PRK10865 protein disaggregatio 85.8 4 8.7E-05 50.6 10.6 41 60-100 183-225 (857)
344 TIGR01074 rep ATP-dependent DN 85.6 3.8 8.3E-05 49.4 10.2 67 56-128 2-70 (664)
345 KOG0738 AAA+-type ATPase [Post 85.4 3.2 7E-05 45.5 8.2 44 77-127 248-292 (491)
346 TIGR01425 SRP54_euk signal rec 85.4 20 0.00044 40.6 14.9 33 78-113 104-136 (429)
347 cd01128 rho_factor Transcripti 85.3 1.5 3.4E-05 45.9 5.8 22 73-94 15-36 (249)
348 CHL00095 clpC Clp protease ATP 85.2 4 8.6E-05 50.5 10.1 27 74-100 200-226 (821)
349 cd03115 SRP The signal recogni 85.1 9.8 0.00021 37.1 11.1 24 78-101 4-27 (173)
350 TIGR03346 chaperone_ClpB ATP-d 85.0 4.4 9.5E-05 50.3 10.4 41 60-100 178-220 (852)
351 PRK13826 Dtr system oriT relax 85.0 5.4 0.00012 50.2 11.1 127 54-220 380-509 (1102)
352 PRK11823 DNA repair protein Ra 85.0 4 8.6E-05 46.7 9.4 48 77-127 83-130 (446)
353 PRK14873 primosome assembly pr 84.9 4.2 9.1E-05 48.7 9.8 94 363-460 170-265 (665)
354 PRK10416 signal recognition pa 84.8 20 0.00043 39.0 14.3 32 78-112 118-149 (318)
355 COG1200 RecG RecG-like helicas 84.6 8.2 0.00018 45.5 11.6 129 296-459 257-391 (677)
356 cd01122 GP4d_helicase GP4d_hel 84.4 7.2 0.00016 41.1 10.5 50 73-124 29-78 (271)
357 COG0630 VirB11 Type IV secreto 84.3 2.4 5.1E-05 46.1 6.8 43 53-98 125-167 (312)
358 cd00984 DnaB_C DnaB helicase C 84.3 8.1 0.00018 39.9 10.7 40 74-115 13-52 (242)
359 PRK11054 helD DNA helicase IV; 83.9 2.4 5.1E-05 51.1 7.2 68 54-127 195-264 (684)
360 PF06564 YhjQ: YhjQ protein; 83.8 2.8 6.2E-05 43.6 6.8 96 80-188 8-127 (243)
361 PRK10867 signal recognition pa 83.8 12 0.00027 42.4 12.5 24 78-101 104-127 (433)
362 cd01125 repA Hexameric Replica 83.7 8.2 0.00018 40.0 10.4 38 77-114 4-50 (239)
363 COG0541 Ffh Signal recognition 83.6 8 0.00017 43.3 10.4 103 78-204 104-207 (451)
364 PHA03368 DNA packaging termina 83.4 1.9 4.2E-05 50.6 5.9 126 77-215 257-389 (738)
365 COG1474 CDC6 Cdc6-related prot 83.3 13 0.00027 41.4 12.1 48 55-102 20-70 (366)
366 COG0210 UvrD Superfamily I DNA 83.1 98 0.0021 37.2 20.8 41 382-422 350-390 (655)
367 PRK07399 DNA polymerase III su 83.1 5.4 0.00012 43.4 9.0 42 60-101 9-53 (314)
368 PRK09376 rho transcription ter 83.1 6.7 0.00015 43.7 9.6 29 72-100 167-195 (416)
369 PF01443 Viral_helicase1: Vira 83.0 1.3 2.9E-05 45.4 4.1 41 178-221 62-102 (234)
370 TIGR00580 mfd transcription-re 83.0 11 0.00025 46.9 12.7 97 363-462 482-583 (926)
371 COG0552 FtsY Signal recognitio 82.7 8.9 0.00019 41.5 10.1 124 78-224 143-277 (340)
372 CHL00206 ycf2 Ycf2; Provisiona 82.7 3.4 7.3E-05 54.1 8.0 42 73-120 1629-1670(2281)
373 PRK11034 clpA ATP-dependent Cl 82.7 7 0.00015 47.7 10.5 27 74-100 207-233 (758)
374 PF06745 KaiC: KaiC; InterPro 82.7 5.3 0.00012 40.9 8.4 50 77-128 22-71 (226)
375 PRK10919 ATP-dependent DNA hel 82.6 2.6 5.6E-05 50.8 6.9 68 55-128 2-71 (672)
376 TIGR00959 ffh signal recogniti 82.5 12 0.00027 42.4 11.8 24 77-100 102-125 (428)
377 TIGR00064 ftsY signal recognit 82.5 20 0.00044 38.0 12.9 32 78-112 76-107 (272)
378 PF01695 IstB_IS21: IstB-like 82.3 2.2 4.7E-05 42.4 5.1 49 71-126 44-92 (178)
379 TIGR03499 FlhF flagellar biosy 82.3 6.6 0.00014 42.0 9.2 25 77-101 197-221 (282)
380 TIGR03880 KaiC_arch_3 KaiC dom 82.2 17 0.00037 37.1 12.0 49 77-128 19-67 (224)
381 PRK14971 DNA polymerase III su 82.2 18 0.00038 43.2 13.5 39 178-216 121-160 (614)
382 cd00561 CobA_CobO_BtuR ATP:cor 82.0 24 0.00052 34.3 12.0 129 78-229 6-147 (159)
383 PRK10689 transcription-repair 81.6 15 0.00032 47.0 13.3 96 363-461 631-731 (1147)
384 TIGR03877 thermo_KaiC_1 KaiC d 81.4 8.5 0.00018 39.9 9.5 62 62-126 8-70 (237)
385 PRK09165 replicative DNA helic 81.4 27 0.00059 40.5 14.4 114 77-191 220-354 (497)
386 PHA03372 DNA packaging termina 81.3 2.7 5.8E-05 48.9 5.9 125 78-215 206-336 (668)
387 PRK13833 conjugal transfer pro 81.2 3.7 8E-05 44.7 6.8 45 53-100 126-170 (323)
388 COG3973 Superfamily I DNA and 81.1 2.7 5.9E-05 48.5 5.8 45 78-122 230-277 (747)
389 PRK14721 flhF flagellar biosyn 80.9 25 0.00054 39.8 13.4 53 178-231 269-326 (420)
390 COG0593 DnaA ATPase involved i 80.8 15 0.00032 41.3 11.4 40 178-217 175-220 (408)
391 PRK08760 replicative DNA helic 80.8 24 0.00053 40.7 13.7 125 64-191 219-352 (476)
392 PF00265 TK: Thymidine kinase; 80.7 1.9 4.1E-05 42.7 4.0 34 78-114 5-38 (176)
393 PRK08840 replicative DNA helic 80.4 33 0.00073 39.4 14.6 126 64-191 207-342 (464)
394 PRK08533 flagellar accessory p 80.4 11 0.00024 39.0 9.7 49 74-125 24-72 (230)
395 PRK03992 proteasome-activating 80.0 6.2 0.00013 44.3 8.4 38 74-117 165-202 (389)
396 PRK12726 flagellar biosynthesi 80.0 34 0.00074 38.2 13.7 43 77-122 209-255 (407)
397 PRK05564 DNA polymerase III su 79.9 10 0.00022 41.0 9.9 23 78-100 30-52 (313)
398 PRK05748 replicative DNA helic 79.9 25 0.00054 40.3 13.4 126 63-191 192-327 (448)
399 TIGR00767 rho transcription te 79.5 11 0.00024 42.1 9.8 27 72-98 166-192 (415)
400 PRK08939 primosomal protein Dn 79.4 18 0.0004 39.1 11.4 28 74-101 156-183 (306)
401 PRK13341 recombination factor 79.4 5.4 0.00012 48.3 8.1 23 75-97 53-75 (725)
402 PRK12608 transcription termina 79.0 7.3 0.00016 43.2 8.2 40 61-101 121-160 (380)
403 PRK07276 DNA polymerase III su 79.0 25 0.00054 37.7 12.1 47 55-102 2-50 (290)
404 PRK14970 DNA polymerase III su 79.0 21 0.00046 39.5 12.2 41 60-100 22-65 (367)
405 PF03354 Terminase_1: Phage Te 78.9 5.1 0.00011 46.3 7.4 130 58-201 1-144 (477)
406 KOG0780 Signal recognition par 78.6 9.2 0.0002 42.1 8.5 96 78-196 105-201 (483)
407 TIGR00665 DnaB replicative DNA 78.5 30 0.00065 39.3 13.5 112 77-191 198-318 (434)
408 KOG1133 Helicase of the DEAD s 78.4 3.5 7.7E-05 48.2 5.7 47 54-100 14-61 (821)
409 COG2812 DnaX DNA polymerase II 78.3 3.9 8.6E-05 47.1 6.1 42 60-101 21-65 (515)
410 COG1066 Sms Predicted ATP-depe 78.2 12 0.00027 41.6 9.5 86 78-192 97-182 (456)
411 TIGR03600 phage_DnaB phage rep 78.2 51 0.0011 37.3 15.2 114 76-192 196-319 (421)
412 PRK06067 flagellar accessory p 77.8 15 0.00032 37.9 9.9 48 77-127 28-75 (234)
413 COG4626 Phage terminase-like p 77.8 7.6 0.00017 44.7 8.1 169 54-237 60-248 (546)
414 PRK06995 flhF flagellar biosyn 77.7 18 0.00038 41.7 11.1 24 78-101 260-283 (484)
415 TIGR01242 26Sp45 26S proteasom 77.6 6.9 0.00015 43.4 7.8 24 74-97 156-179 (364)
416 TIGR01547 phage_term_2 phage t 77.5 13 0.00028 41.7 10.0 129 78-218 5-142 (396)
417 TIGR02640 gas_vesic_GvpN gas v 77.4 6.2 0.00013 41.6 7.0 50 57-112 4-53 (262)
418 PRK13894 conjugal transfer ATP 77.3 5.8 0.00012 43.2 6.8 43 54-99 131-173 (319)
419 TIGR00416 sms DNA repair prote 77.0 9.2 0.0002 43.8 8.7 47 78-127 98-144 (454)
420 PRK07004 replicative DNA helic 76.9 32 0.00069 39.5 13.1 125 64-191 203-337 (460)
421 TIGR00614 recQ_fam ATP-depende 76.9 72 0.0016 36.7 16.1 80 381-462 51-137 (470)
422 COG1618 Predicted nucleotide k 76.7 24 0.00053 34.3 9.9 116 75-211 6-134 (179)
423 TIGR03878 thermo_KaiC_2 KaiC d 76.5 23 0.00051 37.2 11.1 34 77-113 39-72 (259)
424 PRK10263 DNA translocase FtsK; 76.5 10 0.00022 48.1 9.3 42 74-115 1010-1052(1355)
425 PTZ00454 26S protease regulato 76.4 4.8 0.0001 45.2 6.1 37 74-116 179-215 (398)
426 KOG0740 AAA+-type ATPase [Post 76.3 5.4 0.00012 44.8 6.3 44 77-126 189-232 (428)
427 PRK13849 putative crown gall t 76.3 16 0.00036 37.7 9.6 39 82-123 10-50 (231)
428 PRK08506 replicative DNA helic 76.1 32 0.00069 39.7 12.8 112 76-191 194-315 (472)
429 PRK14712 conjugal transfer nic 76.1 15 0.00033 48.1 10.9 63 54-118 834-897 (1623)
430 COG0003 ArsA Predicted ATPase 76.0 12 0.00027 40.7 8.9 57 81-140 9-72 (322)
431 PRK14723 flhF flagellar biosyn 76.0 22 0.00047 43.2 11.6 120 78-228 189-317 (767)
432 PF02606 LpxK: Tetraacyldisacc 75.7 13 0.00028 40.6 9.0 124 84-217 47-189 (326)
433 PRK08006 replicative DNA helic 75.3 33 0.00071 39.6 12.6 60 64-125 214-273 (471)
434 PF03796 DnaB_C: DnaB-like hel 75.2 20 0.00043 37.6 10.1 113 76-192 21-144 (259)
435 KOG1807 Helicases [Replication 75.0 5.3 0.00011 47.3 5.9 69 54-126 377-449 (1025)
436 TIGR01243 CDC48 AAA family ATP 74.9 13 0.00028 45.5 9.7 24 74-97 212-235 (733)
437 CHL00176 ftsH cell division pr 74.8 17 0.00037 43.5 10.4 23 75-97 217-239 (638)
438 COG1702 PhoH Phosphate starvat 74.5 11 0.00024 40.9 7.8 42 179-222 244-285 (348)
439 COG0464 SpoVK ATPases of the A 74.5 3.5 7.5E-05 47.8 4.5 67 55-127 249-323 (494)
440 PRK13709 conjugal transfer nic 73.7 21 0.00046 47.4 11.5 63 54-118 966-1029(1747)
441 PRK09087 hypothetical protein; 73.6 19 0.00042 37.0 9.3 36 180-215 89-125 (226)
442 PF01637 Arch_ATPase: Archaeal 73.5 11 0.00023 38.2 7.4 37 180-216 120-165 (234)
443 PF12846 AAA_10: AAA-like doma 73.3 11 0.00023 40.0 7.7 45 75-122 2-46 (304)
444 PHA00350 putative assembly pro 73.1 5.9 0.00013 44.3 5.6 17 78-94 5-21 (399)
445 PF05729 NACHT: NACHT domain 73.0 12 0.00027 35.4 7.4 29 77-105 3-31 (166)
446 PF13479 AAA_24: AAA domain 72.9 9.3 0.0002 38.9 6.7 31 159-189 47-79 (213)
447 TIGR01241 FtsH_fam ATP-depende 72.7 8.8 0.00019 44.6 7.2 23 75-97 89-111 (495)
448 TIGR00602 rad24 checkpoint pro 72.7 32 0.0007 41.0 11.9 50 48-97 80-133 (637)
449 TIGR02760 TraI_TIGR conjugativ 72.4 18 0.0004 48.9 10.8 62 54-117 1018-1080(1960)
450 PRK05636 replicative DNA helic 72.2 28 0.00062 40.4 11.1 46 77-124 268-313 (505)
451 TIGR01243 CDC48 AAA family ATP 72.1 5.3 0.00012 48.8 5.5 41 74-120 487-527 (733)
452 PHA02542 41 41 helicase; Provi 71.8 25 0.00053 40.6 10.4 60 62-124 177-237 (473)
453 PRK05595 replicative DNA helic 71.3 22 0.00048 40.6 10.0 62 63-126 190-251 (444)
454 cd00268 DEADc DEAD-box helicas 71.3 1.1E+02 0.0024 30.2 15.1 76 380-462 68-153 (203)
455 PRK04328 hypothetical protein; 70.9 22 0.00047 37.2 9.1 47 77-126 26-72 (249)
456 KOG0731 AAA+-type ATPase conta 70.7 11 0.00024 45.3 7.4 120 73-198 343-492 (774)
457 TIGR02782 TrbB_P P-type conjug 70.6 10 0.00022 41.0 6.6 43 55-100 116-158 (299)
458 PLN00020 ribulose bisphosphate 70.0 5.5 0.00012 44.0 4.4 45 74-124 148-192 (413)
459 TIGR01054 rgy reverse gyrase. 70.0 35 0.00075 43.9 12.1 61 379-442 119-186 (1171)
460 PRK04537 ATP-dependent RNA hel 69.6 42 0.00091 39.8 12.1 129 300-462 30-169 (572)
461 PRK14701 reverse gyrase; Provi 69.3 37 0.00081 45.1 12.4 60 380-442 121-186 (1638)
462 TIGR02655 circ_KaiC circadian 69.2 20 0.00044 41.5 9.1 65 61-128 249-314 (484)
463 COG2804 PulE Type II secretory 69.2 7.8 0.00017 44.2 5.5 44 54-100 240-284 (500)
464 PRK09302 circadian clock prote 68.4 18 0.0004 42.1 8.7 49 77-128 276-324 (509)
465 PRK05973 replicative DNA helic 68.4 14 0.0003 38.5 6.8 52 73-127 63-114 (237)
466 PHA02518 ParA-like protein; Pr 68.3 26 0.00057 35.0 8.9 39 81-122 8-48 (211)
467 PF05127 Helicase_RecD: Helica 68.3 2.2 4.8E-05 42.2 0.8 121 79-216 2-123 (177)
468 PF07015 VirC1: VirC1 protein; 68.2 20 0.00043 37.0 7.7 41 82-125 10-52 (231)
469 TIGR02639 ClpA ATP-dependent C 67.8 18 0.0004 44.1 8.8 22 77-98 487-508 (731)
470 PRK06321 replicative DNA helic 67.8 67 0.0015 37.0 12.9 60 64-125 216-275 (472)
471 TIGR02760 TraI_TIGR conjugativ 67.6 42 0.00091 45.6 12.6 64 51-119 425-488 (1960)
472 cd01129 PulE-GspE PulE/GspE Th 67.4 9.7 0.00021 40.3 5.6 42 54-98 62-104 (264)
473 PHA00012 I assembly protein 67.3 11 0.00024 40.8 5.9 24 78-101 5-28 (361)
474 PRK11192 ATP-dependent RNA hel 67.3 62 0.0013 36.7 12.5 86 381-473 73-172 (434)
475 PF04364 DNA_pol3_chi: DNA pol 67.0 17 0.00037 34.3 6.6 79 367-463 15-97 (137)
476 cd01130 VirB11-like_ATPase Typ 66.7 10 0.00022 37.7 5.3 41 53-96 7-47 (186)
477 PF05970 PIF1: PIF1-like helic 66.3 12 0.00027 41.5 6.4 61 55-118 1-63 (364)
478 KOG0726 26S proteasome regulat 66.3 31 0.00067 36.7 8.7 39 57-95 190-240 (440)
479 PF00437 T2SE: Type II/IV secr 66.3 7.5 0.00016 41.1 4.5 34 66-99 119-152 (270)
480 KOG0739 AAA+-type ATPase [Post 66.3 21 0.00046 38.1 7.5 48 75-128 166-214 (439)
481 TIGR02688 conserved hypothetic 66.1 13 0.00028 41.9 6.3 58 59-122 194-252 (449)
482 CHL00195 ycf46 Ycf46; Provisio 65.9 9 0.0002 44.3 5.3 36 74-115 259-294 (489)
483 TIGR02237 recomb_radB DNA repa 65.4 65 0.0014 32.3 11.1 36 77-115 15-50 (209)
484 TIGR01389 recQ ATP-dependent D 65.2 1.8E+02 0.0039 34.5 16.4 77 381-459 53-134 (591)
485 PF00931 NB-ARC: NB-ARC domain 65.1 33 0.00072 36.2 9.3 22 78-99 23-44 (287)
486 PRK07414 cob(I)yrinic acid a,c 64.8 1.3E+02 0.0028 29.9 12.4 58 171-231 108-169 (178)
487 PRK10436 hypothetical protein; 64.7 8.2 0.00018 44.2 4.7 45 51-98 197-242 (462)
488 KOG2340 Uncharacterized conser 64.5 14 0.0003 42.3 6.1 121 370-492 540-667 (698)
489 COG4098 comFA Superfamily II D 64.5 22 0.00047 38.7 7.3 104 91-201 291-395 (441)
490 KOG2028 ATPase related to the 64.5 23 0.0005 38.8 7.6 38 179-218 223-260 (554)
491 PRK09361 radB DNA repair and r 64.3 66 0.0014 32.7 11.0 35 77-114 26-60 (225)
492 PF06068 TIP49: TIP49 C-termin 63.8 9.2 0.0002 42.1 4.6 53 60-116 32-88 (398)
493 COG3598 RepA RecA-family ATPas 63.2 33 0.00071 37.1 8.3 41 72-112 87-134 (402)
494 KOG0734 AAA+-type ATPase conta 63.2 23 0.0005 40.7 7.5 20 76-95 339-358 (752)
495 cd02037 MRP-like MRP (Multiple 63.1 58 0.0012 31.5 9.8 31 78-111 4-34 (169)
496 PRK05917 DNA polymerase III su 62.2 1.1E+02 0.0025 32.8 12.4 116 78-225 23-143 (290)
497 TIGR02533 type_II_gspE general 61.4 11 0.00024 43.5 5.1 46 50-98 220-266 (486)
498 PRK07773 replicative DNA helic 61.1 38 0.00083 42.3 10.0 128 62-192 205-341 (886)
499 TIGR03881 KaiC_arch_4 KaiC dom 60.7 28 0.0006 35.6 7.5 45 74-121 20-64 (229)
500 CHL00095 clpC Clp protease ATP 60.4 12 0.00026 46.3 5.4 42 59-100 513-565 (821)
No 1
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.3e-135 Score=1146.68 Aligned_cols=717 Identities=50% Similarity=0.825 Sum_probs=624.3
Q ss_pred ccccCCCCccCCCCCcCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q 004103 36 TRSFILPQVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 115 (773)
Q Consensus 36 ~~~~i~~~~~~~P~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~s 115 (773)
++|.|.+.+..||+++.||+|++||+.|++||+++|+|+.|||||||||+|||+|+|++|+||++.++..||+|||||++
T Consensus 375 ~AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPls 454 (1157)
T KOG0386|consen 375 TAHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLS 454 (1157)
T ss_pred hcchhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEecccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhh
Q 004103 116 VLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC 195 (773)
Q Consensus 116 ll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s 195 (773)
++.||..||.+|.|++..+.|.|++..|..+...... ++|+|++|||++++++...|.+++|.|+||||+|||||..|
T Consensus 455 tL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~--gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~ 532 (1157)
T KOG0386|consen 455 TLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRH--GKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAIC 532 (1157)
T ss_pred ccCCchhhccccccceeeeeeeCCHHHHhhHHHHHhc--ccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhh
Confidence 9999999999999999999999999999999888766 89999999999999999999999999999999999999999
Q ss_pred HHHHHHH-ccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCC-ccCChHHHHHHHHHHHhh
Q 004103 196 ALAKTIS-GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLIIRRLHHV 273 (773)
Q Consensus 196 ~~~~~l~-~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~-~~~~~~~~~~~~~~L~~~ 273 (773)
+++..+. .|.+.+|+||||||+||++.|||+||||+.|.+|++...|.+||+.||...|. +++++++...++.+||++
T Consensus 533 KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkV 612 (1157)
T KOG0386|consen 533 KLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKV 612 (1157)
T ss_pred HHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHh
Confidence 9999995 88999999999999999999999999999999999999999999999999984 999999999999999999
Q ss_pred hhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhccccccc--CCCccchHHHHHHHHHHHhCCCCcccc-
Q 004103 274 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT--GTGKSKSLQNLSMQLRKCCNHPYLFVG- 350 (773)
Q Consensus 274 L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~--~~~~~~~~~~~~~~Lrk~~~hP~l~~~- 350 (773)
|+||++||.|++|+.+||++++.++.|.||+.|+.+|..+.+.+....+. +.+..++++|.+|+|||||||||+|..
T Consensus 613 LRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v 692 (1157)
T KOG0386|consen 613 LRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV 692 (1157)
T ss_pred hhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhh
Confidence 99999999999999999999999999999999999999999998888776 667788999999999999999999954
Q ss_pred --cccc-hhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhh
Q 004103 351 --EYNM-WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQF 427 (773)
Q Consensus 351 --~~~~-~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F 427 (773)
.+.. +...++++.+||+++|+++|++|++.||+||+||||++++++|++||..++++|.|+||+|+.++|..+++.|
T Consensus 693 e~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~F 772 (1157)
T KOG0386|consen 693 ENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIF 772 (1157)
T ss_pred ccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHh
Confidence 2222 2346899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHH
Q 004103 428 NAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM 507 (773)
Q Consensus 428 n~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~ 507 (773)
|.|++++|+||+||+|||+|+|||+||+||+||++|||+++.||.+|||||||+++|+|+||++.+++||.|+.++..|+
T Consensus 773 N~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl 852 (1157)
T KOG0386|consen 773 NAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKL 852 (1157)
T ss_pred cCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCccCCCCCHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHhcCHHHHHHHHHhhHHHHHhhhh---cccc
Q 004103 508 GIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENY---RSRL 584 (773)
Q Consensus 508 ~l~~~vi~~g~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~l~~r~~~e~~~~~~~~~~~~~~~~~---~~~l 584 (773)
+++.+||++|.|++.++..+++++|+.++.......+++++++++||.|+||+|+|+++|++||++|.++++. ++||
T Consensus 853 ~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~~~v~~~~~ln~~larseeE~~~f~~md~~r~~~e~~~~~k~rl 932 (1157)
T KOG0386|consen 853 DVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEEEEVPDDEVLNSMLARSEEEFELFHKMDEERRATENQQEKKPRL 932 (1157)
T ss_pred CchHhhhhcccccCCCcHHHHHHHHHHHHhCCCccccccCCcHHHHHHHHhcchHHHHHHHHhhHHHHhhhhhccccchh
Confidence 9999999999999999999999999999999999888999999999999999999999999999999987654 6799
Q ss_pred cccCccccccccCCCchhhhhccccccCCCcccCCCcccccccccCcCcCHHHHHHhhhcCCCch-hhhhhhcccccCCC
Q 004103 585 MEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDIS-KLSTRGKRREYLPS 663 (773)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 663 (773)
|+++++|+|+.......+ ....+++.+ ...++|+|+||+|+|+|.+||.||+++++++.+.. +.+++++.+.....
T Consensus 933 ~ee~e~p~~i~~~~~~~~-~~~~~~~~~--~~~~rg~r~Rkev~y~d~~te~q~~k~~e~~~~~~~~~~~~~~~~~~~~~ 1009 (1157)
T KOG0386|consen 933 VEEAELPADIYKRDQGVE-RLSEEEEEE--KILGRGRRARKEVVYSDRLTEMQWLKENESVNKEDSEEEERRRGRKKSSL 1009 (1157)
T ss_pred hhhhhcHHHHHhcchhhh-hhhhhhhhh--ccccccccccceeecccccchhhhhhhccccccccchhhhhccCCCcccc
Confidence 999999999987765322 221111111 12479999999999999999999999999965443 33332222211111
Q ss_pred CCCCCCCCCch-hhhh----ccc--cccccccCcCCCCCccccCCCcccccc-ccccccCcccchhhcccccccccCCCC
Q 004103 664 EGNESASNSTG-AEKK----NLD--MKNEIFPLASEGTSEDTFGSAPKRLRF-ERRNSESSDIQSVEKSEHKGVQGSGLN 735 (773)
Q Consensus 664 ~~~~~~~~~~~-~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (773)
+. .|.+.+.+ ...+ .++ +..++....+++.-.+.|...|-||.. .+..-.+. ..+. -..+
T Consensus 1010 ~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~------~~~~-----~~~~ 1077 (1157)
T KOG0386|consen 1010 DT-RPLSQKKRKLRPRSPKQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKK------PVAI-----DKIK 1077 (1157)
T ss_pred cc-ccchhhcccccCCChHHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcc------hhhH-----HHHh
Confidence 11 22222111 0000 000 001111111233345555555544333 33321111 1111 1467
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCCC
Q 004103 736 GHILTWNTHRKKRSSYVVQTSSSDSRGQNSNGRG 769 (773)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (773)
++|.+|.++..|+..+.++.+.+++|.-|+.|+.
T Consensus 1078 ~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~ 1111 (1157)
T KOG0386|consen 1078 KRIENHKYNSLKELEKDFMLLFNNARTYNEEGSR 1111 (1157)
T ss_pred hhccccccchHHHHHHHHHhhcchhhhhccCCce
Confidence 8999999999999999999999999998888764
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=3.7e-120 Score=996.83 Aligned_cols=510 Identities=50% Similarity=0.888 Sum_probs=467.6
Q ss_pred CccCCCCCcCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHH
Q 004103 43 QVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 122 (773)
Q Consensus 43 ~~~~~P~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~ 122 (773)
....+|..+.+++|||||++|++||+++|.++.|||||||||||||+|+|+++.|+....+..||+||+||+|++.||.+
T Consensus 155 ~~~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~ 234 (971)
T KOG0385|consen 155 RFEDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMN 234 (971)
T ss_pred cccCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHH
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHH
Q 004103 123 EFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTIS 202 (773)
Q Consensus 123 E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~ 202 (773)
||.+|+|++++++|.|++.+|..+...+... +.|+||||||++++++.+.|..+.|.|+|||||||+||.+|++++.++
T Consensus 235 Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~-~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr 313 (971)
T KOG0385|consen 235 EFKRFTPSLNVVVYHGDKEERAALRRDIMLP-GRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILR 313 (971)
T ss_pred HHHHhCCCcceEEEeCCHHHHHHHHHHhhcc-CCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHH
Confidence 9999999999999999999999998887766 699999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhh
Q 004103 203 GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 282 (773)
Q Consensus 203 ~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~ 282 (773)
.|.+.+||||||||+|||+.|||+|||||.|++|++.+.|..||..... +.....+.+||.+|+||++||.
T Consensus 314 ~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~---------~~~~e~v~~Lh~vL~pFlLRR~ 384 (971)
T KOG0385|consen 314 EFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC---------EGDQELVSRLHKVLRPFLLRRI 384 (971)
T ss_pred HhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc---------ccCHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999986522 2223378999999999999999
Q ss_pred hhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCC-ccchHHHHHHHHHHHhCCCCccccccc---chhhH
Q 004103 283 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTG-KSKSLQNLSMQLRKCCNHPYLFVGEYN---MWRKE 358 (773)
Q Consensus 283 k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~-~~~~~~~~~~~Lrk~~~hP~l~~~~~~---~~~~~ 358 (773)
|.+|+..|||+.+..+++.|+.+|+++|..++......+....+ ....++|++|||||||||||||++..+ ...++
T Consensus 385 K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttde 464 (971)
T KOG0385|consen 385 KSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 464 (971)
T ss_pred HHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcch
Confidence 99999999999999999999999999999999887776655442 567899999999999999999998322 23578
Q ss_pred HHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 004103 359 EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 438 (773)
Q Consensus 359 ~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~L 438 (773)
+++.+|||+.+|+++|+.+++.||||||||||+.++|+|++||..+||.|+||||+|+.++|..+|+.||++++.+||||
T Consensus 465 hLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFl 544 (971)
T KOG0385|consen 465 HLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFL 544 (971)
T ss_pred HHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHHHHcCc
Q 004103 439 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGL 518 (773)
Q Consensus 439 lSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi~~g~ 518 (773)
+||+|||+||||++||+||+||+||||+.++||++|||||||+|+|.||||||++||||+|++|+..|++|++.||++|.
T Consensus 545 LSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g~ 624 (971)
T KOG0385|consen 545 LSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQGR 624 (971)
T ss_pred EeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred cCCCCCHHHHHHHHHHHHHhccCCC---CCCCCCHHHHHHHHhcCHHH
Q 004103 519 FNTTSTAQDRREMLKEIMRRGTSSL---GTDVPSEREINRLAARSDEE 563 (773)
Q Consensus 519 ~~~~~~~~~~~~~l~~i~~~~~~~~---~~~~~~~~~~~~l~~r~~~e 563 (773)
........+..+.+-.+++++.... .+...++ +|+.|+.++++.
T Consensus 625 l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~~~d-Did~il~~~e~k 671 (971)
T KOG0385|consen 625 LEEQKSNGLGKDELLNLLRFGADPVFESKESTISD-DIDRILERGEEK 671 (971)
T ss_pred hhhhhccccchHHHHHHHHcCchhhhhhcccccch-hHHHHHHhhhhh
Confidence 5443333344455556778886642 2223344 999999999964
No 3
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=7.4e-109 Score=945.81 Aligned_cols=505 Identities=47% Similarity=0.812 Sum_probs=463.6
Q ss_pred ccCCCCCcCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHH
Q 004103 44 VTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINE 123 (773)
Q Consensus 44 ~~~~P~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E 123 (773)
+..+|..+.|.+||+||++|++||+..|.++.+||||||||||||+|+|+++.++.......||+|||||.|++.+|.+|
T Consensus 359 le~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~e 438 (1373)
T KOG0384|consen 359 LEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWERE 438 (1373)
T ss_pred hhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCceEEEecCChhHHHHHHHHHHhhcC-----CccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHH
Q 004103 124 FSTWAPSIAAVVYDGRPDERKAMREEFFSERG-----RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALA 198 (773)
Q Consensus 124 ~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~-----~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~ 198 (773)
|..|+ ..++++|.|+...|..+++..+.... +|+++||||+++.+|...|..++|.+++||||||+||.+|+++
T Consensus 439 f~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~ 517 (1373)
T KOG0384|consen 439 FETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLY 517 (1373)
T ss_pred HHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHH
Confidence 99999 99999999999999999887665434 6999999999999999999999999999999999999999999
Q ss_pred HHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhh
Q 004103 199 KTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 278 (773)
Q Consensus 199 ~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~ 278 (773)
..+..+...+|||+||||+||++.|||+||+||+|..|.+.+.|...|+. ++...+..||..|+|||
T Consensus 518 ~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~-------------~~e~~~~~L~~~L~P~~ 584 (1373)
T KOG0384|consen 518 ESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE-------------ETEEQVRKLQQILKPFL 584 (1373)
T ss_pred HHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc-------------hhHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999887732 23445889999999999
Q ss_pred hhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCC-CccchHHHHHHHHHHHhCCCCcccccccc---
Q 004103 279 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQLRKCCNHPYLFVGEYNM--- 354 (773)
Q Consensus 279 lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~-~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~--- 354 (773)
+||+++||++.||++.|.++.|+||+.|+++|+.|+..+...+..+. +...++.|++|.|+||||||||+.+....
T Consensus 585 lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~ 664 (1373)
T KOG0384|consen 585 LRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILG 664 (1373)
T ss_pred HHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHH
Confidence 99999999999999999999999999999999999998887776554 45578999999999999999999873221
Q ss_pred --------hhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHh
Q 004103 355 --------WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQ 426 (773)
Q Consensus 355 --------~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~ 426 (773)
...+.+|.+|||+.+|++||.+|++.||||||||||+.|||+|++||..++|+|.||||++..+-|+.+|+.
T Consensus 665 ~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDh 744 (1373)
T KOG0384|consen 665 DFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDH 744 (1373)
T ss_pred hhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHh
Confidence 234568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHH
Q 004103 427 FNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 506 (773)
Q Consensus 427 Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K 506 (773)
||+++++.|||||||+|||+||||.+||||||||+||||+.++||++|||||||++.|.||||||++|+|+.|+++|..|
T Consensus 745 Fnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~K 824 (1373)
T KOG0384|consen 745 FNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLK 824 (1373)
T ss_pred ccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHcCccCC--CCCHHHHHHHHHHHHHhccCCCCC------CCCCHHHHHHHHhcCHH
Q 004103 507 MGIDAKVIQAGLFNT--TSTAQDRREMLKEIMRRGTSSLGT------DVPSEREINRLAARSDE 562 (773)
Q Consensus 507 ~~l~~~vi~~g~~~~--~~~~~~~~~~l~~i~~~~~~~~~~------~~~~~~~~~~l~~r~~~ 562 (773)
+.|+.+|||.+..+. .....-..+.|++||++|+..+.. ..+.+.+|++||.|-+.
T Consensus 825 mvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae~ 888 (1373)
T KOG0384|consen 825 MVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEESKFCEMDIDEILERAET 888 (1373)
T ss_pred hhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhccccccccccccCHHHHHhhccc
Confidence 999999999987522 222333467799999999876421 23345788888877664
No 4
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=4.3e-97 Score=881.15 Aligned_cols=570 Identities=45% Similarity=0.799 Sum_probs=487.5
Q ss_pred CccCCCCCcCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHH
Q 004103 43 QVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 122 (773)
Q Consensus 43 ~~~~~P~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~ 122 (773)
.+..+|..+. ++|+|||++|++||+.++.++.+|||||+||||||+|+|+++.++....+..+|+|||||.+++.||..
T Consensus 158 ~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~ 236 (1033)
T PLN03142 158 RLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMN 236 (1033)
T ss_pred eeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHH
Confidence 3556788887 799999999999999999999999999999999999999999999888788899999999999999999
Q ss_pred HHHhhcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHH
Q 004103 123 EFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTIS 202 (773)
Q Consensus 123 E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~ 202 (773)
||.+|+|.+.+++|+|+...+.......... +.++|+||||+++.++...|..+.|++|||||||++||..++++++++
T Consensus 237 Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~-~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr 315 (1033)
T PLN03142 237 EIRRFCPVLRAVKFHGNPEERAHQREELLVA-GKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMR 315 (1033)
T ss_pred HHHHHCCCCceEEEeCCHHHHHHHHHHHhcc-cCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHH
Confidence 9999999999999999998887766554433 679999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhh
Q 004103 203 GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 282 (773)
Q Consensus 203 ~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~ 282 (773)
.+.+.+||+|||||++|++.|||+||+||.|++|++...|..||..... ......+.+|+.+|+||++||+
T Consensus 316 ~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~---------~~~~e~i~~L~~~L~pf~LRR~ 386 (1033)
T PLN03142 316 LFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGE---------NDQQEVVQQLHKVLRPFLLRRL 386 (1033)
T ss_pred HhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccc---------cchHHHHHHHHHHhhHHHhhhh
Confidence 9999999999999999999999999999999999999999999976321 2234567899999999999999
Q ss_pred hhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCccccccc---chhhHH
Q 004103 283 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYN---MWRKEE 359 (773)
Q Consensus 283 k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~---~~~~~~ 359 (773)
+.+|...||++.+.+++|+||+.|+.+|..+.......+..+. ....+.+++|+||+||+||+++.+... ....+.
T Consensus 387 KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~-~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~ 465 (1033)
T PLN03142 387 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGG-ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEH 465 (1033)
T ss_pred HHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhH
Confidence 9999999999999999999999999999999876554443332 345688999999999999999876321 234567
Q ss_pred HHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEE
Q 004103 360 IIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 439 (773)
Q Consensus 360 l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~Ll 439 (773)
++..|+|+.+|+++|+.+...|+||||||||+.++++|+++|..+|++|++|||+++.++|+.+++.||++++..+|||+
T Consensus 466 lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLL 545 (1033)
T PLN03142 466 LVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLL 545 (1033)
T ss_pred HhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred ecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHHHHcCcc
Q 004103 440 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 519 (773)
Q Consensus 440 St~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi~~g~~ 519 (773)
||+|||+||||+.|++||+||++|||+.+.||+||+|||||+++|.||+|++.+||||+|++++..|+.++..|++.|.+
T Consensus 546 STrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~ 625 (1033)
T PLN03142 546 STRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRL 625 (1033)
T ss_pred eccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCHHHHHHHHHHHHHhccCCCC---CCCCCHHHHHHHHhcCHHHHH-HHHHhhHHHHHhhhhcccccccCccccccc
Q 004103 520 NTTSTAQDRREMLKEIMRRGTSSLG---TDVPSEREINRLAARSDEEFW-LFEKMDEERRQKENYRSRLMEDHEVPEWAY 595 (773)
Q Consensus 520 ~~~~~~~~~~~~l~~i~~~~~~~~~---~~~~~~~~~~~l~~r~~~e~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 595 (773)
.... ....+.|.++++.|+..+. ....++++|+.|++|+++... +.+++..--. ......+-....+++|.+
T Consensus 626 ~~~~--~~~~~eL~~ll~~ga~~~f~~~~~~~~~~did~il~~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~g 701 (1033)
T PLN03142 626 AEQK--TVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTE--DAIKFKMDDTAELYDFDD 701 (1033)
T ss_pred cccc--cCCHHHHHHHHHhChHHhhhccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHhch--hhhcccccCCcceeeecC
Confidence 5432 1223456678888776432 345689999999999998653 2233332111 122233334567899987
Q ss_pred cCCCchhhhhccccccCCCcccCCCcccccccccCc
Q 004103 596 SAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYAD 631 (773)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~ 631 (773)
.+.....+ ..+.+ .....|+.+++|+||. +|+.
T Consensus 702 ~~~~~~~~-~~~~~-~~~~~~~~~~~re~~~-~~~~ 734 (1033)
T PLN03142 702 EDDKDENK-LDFKK-IVSDNWIDPPKRERKR-NYSE 734 (1033)
T ss_pred ccccchhh-hhHhh-hccccccccchhhhhc-ccch
Confidence 65542211 11111 2223588899999994 6764
No 5
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=7.1e-97 Score=831.33 Aligned_cols=471 Identities=46% Similarity=0.805 Sum_probs=431.8
Q ss_pred CCCCcCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHh
Q 004103 47 QPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 126 (773)
Q Consensus 47 ~P~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k 126 (773)
.|..+ -|.||.||..|+.||+.+|+++.|||||||||||||+|+|++++||....++.||+|||||++++-||.-||++
T Consensus 608 vPsLL-rGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKR 686 (1958)
T KOG0391|consen 608 VPSLL-RGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKR 686 (1958)
T ss_pred chHHH-HHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhh
Confidence 35555 47999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcccc
Q 004103 127 WAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQI 206 (773)
Q Consensus 127 ~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~ 206 (773)
|||+++++.|.|+..+|+.-++.|... ..|+|+||+|..+..|...|....|.|+|+||||++||..+..++++..+.+
T Consensus 687 wcPglKILTYyGs~kErkeKRqgW~kP-naFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfns 765 (1958)
T KOG0391|consen 687 WCPGLKILTYYGSHKERKEKRQGWAKP-NAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNS 765 (1958)
T ss_pred hCCcceEeeecCCHHHHHHHhhcccCC-CeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccch
Confidence 999999999999999999988887666 6799999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 004103 207 QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 286 (773)
Q Consensus 207 ~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv 286 (773)
.+||||||||++|++.|||+|++||+|.+|.+.+.|..||..|... .++-+.+-....+.+||++|+||+|||+|.||
T Consensus 766 qrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltg--miEgsqeyn~klV~RLHkVlrPfiLRRlK~dV 843 (1958)
T KOG0391|consen 766 QRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTG--MIEGSQEYNHKLVIRLHKVLRPFILRRLKRDV 843 (1958)
T ss_pred hheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchh--hcccchhhchHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998764 33344444567789999999999999999999
Q ss_pred hhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCccccc------------ccc
Q 004103 287 EKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGE------------YNM 354 (773)
Q Consensus 287 ~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~------------~~~ 354 (773)
+++||.|.|++|+|.||.-|+.+|+.++......-.-.+|.-.+..|++|+||+|||||.||+.. +..
T Consensus 844 EKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~ 923 (1958)
T KOG0391|consen 844 EKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSS 923 (1958)
T ss_pred HHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccc
Confidence 99999999999999999999999999986554443445667788999999999999999888520 000
Q ss_pred h-------------------------------------------------------------------h----------h
Q 004103 355 W-------------------------------------------------------------------R----------K 357 (773)
Q Consensus 355 ~-------------------------------------------------------------------~----------~ 357 (773)
. . .
T Consensus 924 as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atspht 1003 (1958)
T KOG0391|consen 924 ASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHT 1003 (1958)
T ss_pred cccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCcc
Confidence 0 0 0
Q ss_pred HH-------------------H----------------------------------------------------------
Q 004103 358 EE-------------------I---------------------------------------------------------- 360 (773)
Q Consensus 358 ~~-------------------l---------------------------------------------------------- 360 (773)
++ +
T Consensus 1004 eea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~ 1083 (1958)
T KOG0391|consen 1004 EEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHG 1083 (1958)
T ss_pred ccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecch
Confidence 00 0
Q ss_pred --------------------------------------------------------------------------------
Q 004103 361 -------------------------------------------------------------------------------- 360 (773)
Q Consensus 361 -------------------------------------------------------------------------------- 360 (773)
T Consensus 1084 a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e 1163 (1958)
T KOG0391|consen 1084 ALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSE 1163 (1958)
T ss_pred hhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 004103 361 -------------------------------------------------------------------------------- 360 (773)
Q Consensus 361 -------------------------------------------------------------------------------- 360 (773)
T Consensus 1164 ~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~q~~~ 1243 (1958)
T KOG0391|consen 1164 GIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQRQTTA 1243 (1958)
T ss_pred hhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccchhhccc
Confidence
Q ss_pred ------------HhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhc
Q 004103 361 ------------IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFN 428 (773)
Q Consensus 361 ------------~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn 428 (773)
--.+||++.|.-+|.+|+..|||||||+||+.|+|+|+.||.++||.|+||||+++.++|+.++++||
T Consensus 1244 ~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFN 1323 (1958)
T KOG0391|consen 1244 PRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFN 1323 (1958)
T ss_pred hhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhc
Confidence 00189999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHh
Q 004103 429 APDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMG 508 (773)
Q Consensus 429 ~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~ 508 (773)
. +..+||||+||+.||+||||+.||+|||||+||||.++.||++|+|||||+++|+|||||.+.||||.|+.++++|..
T Consensus 1324 a-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~ 1402 (1958)
T KOG0391|consen 1324 A-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRM 1402 (1958)
T ss_pred C-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHH
Confidence 9 778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccCCC
Q 004103 509 IDAKVIQAGLFNTT 522 (773)
Q Consensus 509 l~~~vi~~g~~~~~ 522 (773)
+++.+|++|.|...
T Consensus 1403 L~evaiqggdfTt~ 1416 (1958)
T KOG0391|consen 1403 LDEVAIQGGDFTTA 1416 (1958)
T ss_pred HHHHhhccCCccHH
Confidence 99999999988654
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-95 Score=806.70 Aligned_cols=472 Identities=46% Similarity=0.757 Sum_probs=419.6
Q ss_pred ccCCCCCcC-CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHH
Q 004103 44 VTEQPTLLQ-GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 122 (773)
Q Consensus 44 ~~~~P~~l~-~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~ 122 (773)
+.+||+.+. +.+|+|||+.||+||+-+|+++.+||||||||||||+|+||++++|.+.+ ..||+|||||.|++.||.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g-~~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIG-NPGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcC-CCCCcEEEecchhHHHHHH
Confidence 556888776 67999999999999999999999999999999999999999999999974 5899999999999999999
Q ss_pred HHHhhcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHH---hHHHHhhcCeeEEEEccccccCChhhHHHH
Q 004103 123 EFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMR---DRQYLKKVQWIYMIVDEGHRLKNHECALAK 199 (773)
Q Consensus 123 E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~---~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~ 199 (773)
||.+|||.+.|..|+|+..+|..++..+.....+|+|++|||..+.. |+.+|+..+|+++|+||||.+||..|.+++
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHH
Confidence 99999999999999999999999999888777799999999999864 688999999999999999999999999999
Q ss_pred HHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCC-hHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhh
Q 004103 200 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNS-VENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 278 (773)
Q Consensus 200 ~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~-~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~ 278 (773)
.|..+++.+||||||||+|||+.||++||.|++|.+|.+ .+.+..-|.......+..+-.--.+ ..|.|...++.||+
T Consensus 546 ~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~q-erIsrAK~im~PFI 624 (941)
T KOG0389|consen 546 HLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQ-ERISRAKTIMKPFI 624 (941)
T ss_pred HhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHH-HHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999975 5667777765443322221111112 25888899999999
Q ss_pred hhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCc--cchHHHHHHHHHHHhCCCCcccccccchh
Q 004103 279 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGK--SKSLQNLSMQLRKCCNHPYLFVGEYNMWR 356 (773)
Q Consensus 279 lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~--~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~ 356 (773)
|||+|.+|...||+|..++.+|+|+..|+.+|..+.+............ ..+ .+++|+||+++|||.|+...|....
T Consensus 625 LRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~-~~vlmqlRK~AnHPLL~R~~Y~de~ 703 (941)
T KOG0389|consen 625 LRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS-GNVLMQLRKAANHPLLFRSIYTDEK 703 (941)
T ss_pred HHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc-chHHHHHHHHhcChhHHHHhccHHH
Confidence 9999999999999999999999999999999999987663322222211 112 6799999999999999876443321
Q ss_pred h-------------------------------------------------HHHHhhcchHHHHHHHHHHhhhcCCcEEEE
Q 004103 357 K-------------------------------------------------EEIIRASGKFELLDRLLPKLRKSGHRVLLF 387 (773)
Q Consensus 357 ~-------------------------------------------------~~l~~~s~K~~~L~~ll~~l~~~g~kvLIF 387 (773)
. ...+-.|||+..|..+|++++..|+|||||
T Consensus 704 L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiF 783 (941)
T KOG0389|consen 704 LRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIF 783 (941)
T ss_pred HHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEe
Confidence 0 112446999999999999999999999999
Q ss_pred eecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhh
Q 004103 388 SQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQM 467 (773)
Q Consensus 388 sq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~ 467 (773)
||||.|+|||+.+|..+|+.|+|+||+|...+|+.+|++||. +.++||||+||+|||.||||++||+||++|.++||..
T Consensus 784 SQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~d 862 (941)
T KOG0389|consen 784 SQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYD 862 (941)
T ss_pred eHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcceecccccceEEEeecCCCCcc
Confidence 999999999999999999999999999999999999999998 5669999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHHHHcCcc
Q 004103 468 DQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 519 (773)
Q Consensus 468 ~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi~~g~~ 519 (773)
+.||.+||||+||+++|+|||||+++||||.|+..++.|+.|+..+...+.-
T Consensus 863 D~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 863 DKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKG 914 (941)
T ss_pred cchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccc
Confidence 9999999999999999999999999999999999999999999999877653
No 7
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=4.1e-94 Score=780.04 Aligned_cols=465 Identities=46% Similarity=0.825 Sum_probs=422.5
Q ss_pred CccCCCCCcCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHH
Q 004103 43 QVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 122 (773)
Q Consensus 43 ~~~~~P~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~ 122 (773)
...+||.++. ++|+.||+.|++||+.+|.+|.|||||||||||||+|+|+++++|.+.+.+.||+|||+|.+++.||+.
T Consensus 556 ~tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaq 634 (1185)
T KOG0388|consen 556 RTVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQ 634 (1185)
T ss_pred eeccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHH
Confidence 3457888886 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCceEEEecCChhHHHHHHHHHH-----hhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHH
Q 004103 123 EFSTWAPSIAAVVYDGRPDERKAMREEFF-----SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECAL 197 (773)
Q Consensus 123 E~~k~~p~~~v~~~~g~~~~r~~~~~~~~-----~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~ 197 (773)
||.+|+|.++++.|-|+..+|+.++..+. .....|+|+||||+.+..|...|.+++|.|+|+|||+-+|...|..
T Consensus 635 EisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~R 714 (1185)
T KOG0388|consen 635 EISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSSR 714 (1185)
T ss_pred HHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhhH
Confidence 99999999999999999999999886432 3357899999999999999999999999999999999999999999
Q ss_pred HHHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhh
Q 004103 198 AKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 277 (773)
Q Consensus 198 ~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~ 277 (773)
++.|..|+|+.||||||||+||+..|||+||+|++|.+|.+..+|.+||.+.+........+-. ...++|||.+|+||
T Consensus 715 WKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tln--eqqL~RLH~ILKPF 792 (1185)
T KOG0388|consen 715 WKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLN--EQQLQRLHAILKPF 792 (1185)
T ss_pred HHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcC--HHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999987765432222211 23478999999999
Q ss_pred hhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCccccccc----
Q 004103 278 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYN---- 353 (773)
Q Consensus 278 ~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~---- 353 (773)
||||.|++|..+|..+.++.++|++|.-|+.+|+.|..... ...+.+++||||++||||-||.....
T Consensus 793 MLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS---------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L 863 (1185)
T KOG0388|consen 793 MLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS---------SMEMENLVMQLRKVCNHPDLFERLEPRSGL 863 (1185)
T ss_pred HHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHhcCChHHHhhcCCccee
Confidence 99999999999999999999999999999999999976532 23455799999999999988742000
Q ss_pred -----------------c--hh--------------------------------------------------------hH
Q 004103 354 -----------------M--WR--------------------------------------------------------KE 358 (773)
Q Consensus 354 -----------------~--~~--------------------------------------------------------~~ 358 (773)
+ +. .+
T Consensus 864 ~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e 943 (1185)
T KOG0388|consen 864 SLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVE 943 (1185)
T ss_pred EEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHH
Confidence 0 00 00
Q ss_pred ------------------------------------------------------------------------------HH
Q 004103 359 ------------------------------------------------------------------------------EI 360 (773)
Q Consensus 359 ------------------------------------------------------------------------------~l 360 (773)
..
T Consensus 944 ~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~F 1023 (1185)
T KOG0388|consen 944 EAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTF 1023 (1185)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhh
Confidence 00
Q ss_pred HhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEe
Q 004103 361 IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 440 (773)
Q Consensus 361 ~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlS 440 (773)
+..|||+..|+.+|+++++.|||||+|.||+.|+|+|++||.++||.|+|+||+.+..+|..++.+|+. ++.||||+|
T Consensus 1024 itdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~--sdiFvFLLS 1101 (1185)
T KOG0388|consen 1024 ITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA--SDIFVFLLS 1101 (1185)
T ss_pred hccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC--CceEEEEEe
Confidence 334899999999999999999999999999999999999999999999999999999999999999998 668999999
Q ss_pred cccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHHHHcCccC
Q 004103 441 TRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFN 520 (773)
Q Consensus 441 t~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi~~g~~~ 520 (773)
|+|||.||||++||+|||||++|||..+.||++||||.||+++|.||||++.+||||+|++++.+|..+-+.||.++.|.
T Consensus 1102 TRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~~~q 1181 (1185)
T KOG0388|consen 1102 TRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGNIFQ 1181 (1185)
T ss_pred cccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred C
Q 004103 521 T 521 (773)
Q Consensus 521 ~ 521 (773)
.
T Consensus 1182 g 1182 (1185)
T KOG0388|consen 1182 G 1182 (1185)
T ss_pred C
Confidence 4
No 8
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.9e-89 Score=758.35 Aligned_cols=462 Identities=37% Similarity=0.649 Sum_probs=407.2
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceE
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAA 133 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v 133 (773)
..|+|||.+||+||..++.++.||||+||||||||+|.|++++.+.......+|+|||||.+++.||..||++|+|.++|
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcceEE
Confidence 48999999999999999999999999999999999999999999998866779999999999999999999999999999
Q ss_pred EEecCChhHHH-H------HHHHHH--hhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc
Q 004103 134 VVYDGRPDERK-A------MREEFF--SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY 204 (773)
Q Consensus 134 ~~~~g~~~~r~-~------~~~~~~--~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~ 204 (773)
.+++++..... . .+..+. .......|+||||+.+......+..+.|+|+|+||+|+++|++++++.+++.+
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~islackki 363 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSKISLACKKI 363 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccHHHHHHHhc
Confidence 99998766210 0 001100 11245579999999999999999999999999999999999999999999999
Q ss_pred ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHH---HHHHHHhhhhhhhhhh
Q 004103 205 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLL---IIRRLHHVIRPFILRR 281 (773)
Q Consensus 205 ~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~---~~~~L~~~L~p~~lRR 281 (773)
++.+|++|||||+||++.|||+|++|+.|+.+++...|.+.|..|+..++....++..... ....|+.+++||+|||
T Consensus 364 ~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR 443 (923)
T KOG0387|consen 364 RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRR 443 (923)
T ss_pred cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887777765443 4455999999999999
Q ss_pred hhhHHhh-cCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccc--cch--h
Q 004103 282 KKDEVEK-YLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY--NMW--R 356 (773)
Q Consensus 282 ~k~dv~~-~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~--~~~--~ 356 (773)
+|.+|.. .||.|.+.+++|.||+.|+.+|+.+.....+... -.++. ....-+.-||++||||-|+.... ... .
T Consensus 444 ~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i-~ng~~-~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D 521 (923)
T KOG0387|consen 444 MKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKI-LNGKR-NCLSGIDILRKICNHPDLLDRRDEDEKQGPD 521 (923)
T ss_pred HHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHH-HcCCc-cceechHHHHhhcCCcccccCcccccccCCC
Confidence 9999998 9999999999999999999999999875433211 01111 12222345899999999998741 111 1
Q ss_pred hHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHH-hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcE
Q 004103 357 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK-LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 435 (773)
Q Consensus 357 ~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~-~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~ 435 (773)
.+..+..|||++++..+|......|+|||+|+|.+.|+|+|+.+|. ..||.|+++||.|+...|+.+|++||++ ...+
T Consensus 522 ~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~-~s~~ 600 (923)
T KOG0387|consen 522 YEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNED-ESIF 600 (923)
T ss_pred cCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCC-CceE
Confidence 1134678999999999999999999999999999999999999999 7899999999999999999999999984 4589
Q ss_pred EEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHHHH
Q 004103 436 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQ 515 (773)
Q Consensus 436 v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi~ 515 (773)
|||++|++||+|+||+.||+||+|||+|||+.+.||..||+||||++.|.||||++.+||||.||.++-.|..|.+.++.
T Consensus 601 VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~ 680 (923)
T KOG0387|consen 601 VFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILK 680 (923)
T ss_pred EEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCc
Q 004103 516 AGL 518 (773)
Q Consensus 516 ~g~ 518 (773)
.-.
T Consensus 681 ~p~ 683 (923)
T KOG0387|consen 681 NPE 683 (923)
T ss_pred CHH
Confidence 543
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=1.1e-83 Score=734.37 Aligned_cols=460 Identities=37% Similarity=0.639 Sum_probs=408.9
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC------CCCCEEEEeCCcchHHHHHHHHhh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG------VTGPHVIVAPKAVLPNWINEFSTW 127 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~------~~gp~LIVvP~sll~qW~~E~~k~ 127 (773)
.+||.||++||+|+..+..-+.+|||||+||+|||+|+|++++.-...+. ..-|.|||||.++..+|..|+.+|
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 68999999999999999999999999999999999999999876554431 234899999999999999999999
Q ss_pred cCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccc
Q 004103 128 APSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ 207 (773)
Q Consensus 128 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~ 207 (773)
+|.+++..|.|.+.+|..++... .+.+|+||+|+.+.+|..+|.++.|.|+|+||+|-+||..++++++++.+.+.
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~----~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~ 1129 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQY----KNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRAN 1129 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhc----cccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHHHHHhhc
Confidence 99999999999999999988765 56799999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCC---hHHHHHHHHHHHhhhhhhhhhhhhh
Q 004103 208 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALT---DEEQLLIIRRLHHVIRPFILRRKKD 284 (773)
Q Consensus 208 ~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~---~~~~~~~~~~L~~~L~p~~lRR~k~ 284 (773)
||++|||||+|||..|||+|++||+|+.+++.+.|.+.|.+|+........+ .+....++..||+.+-||++||+|.
T Consensus 1130 hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKe 1209 (1549)
T KOG0392|consen 1130 HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKE 1209 (1549)
T ss_pred ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998876544333 3557778999999999999999999
Q ss_pred HHhhcCCCceeEEEEecCCHHHHHHHHHHHHhccccccc---CC----C-ccchHHHHHHHHHHHhCCCCcccccccchh
Q 004103 285 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT---GT----G-KSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 356 (773)
Q Consensus 285 dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~---~~----~-~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~ 356 (773)
||.++||||.....+|+|+|.|+++|+.+.......... +. + .....+..+..+|+.||||.|...+..+.-
T Consensus 1210 dVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~l 1289 (1549)
T KOG0392|consen 1210 DVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDL 1289 (1549)
T ss_pred HHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchH
Confidence 999999999999999999999999999998873322111 11 1 133455667889999999999877532211
Q ss_pred ----------hH--HHHhhcchHHHHHHHHHHhh--------------hcCCcEEEEeecHHHHHHHHHHHHhC---CCe
Q 004103 357 ----------KE--EIIRASGKFELLDRLLPKLR--------------KSGHRVLLFSQMTRLMDILEIYLKLN---DFK 407 (773)
Q Consensus 357 ----------~~--~l~~~s~K~~~L~~ll~~l~--------------~~g~kvLIFsq~~~~ld~L~~~L~~~---g~~ 407 (773)
.. +-+..++|+.+|..+|..+- ..+||+|||||+..++|++++-|-.. .+.
T Consensus 1290 a~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVt 1369 (1549)
T KOG0392|consen 1290 AAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVT 1369 (1549)
T ss_pred HHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCcee
Confidence 11 22678999999999998862 14799999999999999999988654 567
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEE
Q 004103 408 FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 487 (773)
Q Consensus 408 ~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~ 487 (773)
|.|+||++++.+|++++++||++ ....|+|++|.+||.||||++|||||+++-||||..++||++|||||||++.|+||
T Consensus 1370 ymRLDGSVpp~~R~kiV~~FN~D-ptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1370 YMRLDGSVPPGDRQKIVERFNED-PTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred EEEecCCCCcHHHHHHHHHhcCC-CceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeee
Confidence 99999999999999999999984 44779999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHhHHHHHHHcCc
Q 004103 488 VLVSVGSIEEVILERAKQKMGIDAKVIQAGL 518 (773)
Q Consensus 488 rLi~~~tiEe~i~~~~~~K~~l~~~vi~~g~ 518 (773)
||||.||+||+|+..++.|+++++.||.+..
T Consensus 1449 RlItrGTLEEKVMgLQkFKmnvAntvInqqN 1479 (1549)
T KOG0392|consen 1449 RLITRGTLEEKVMGLQKFKMNVANTVINQQN 1479 (1549)
T ss_pred eehhcccHHHHHhhHHHHhhHHHHHHHhccc
Confidence 9999999999999999999999999998754
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-72 Score=642.36 Aligned_cols=464 Identities=34% Similarity=0.526 Sum_probs=391.1
Q ss_pred CCCchHHHHHHHHHHHHhhc------CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCC----CCEEEEeCCcchHHHHH
Q 004103 53 GGELRAYQLEGLQWMLSLFN------NNLNGILADEMGLGKTIQTIALIAYLLENKGVT----GPHVIVAPKAVLPNWIN 122 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~------~~~~gILademGlGKTi~aiali~~l~~~~~~~----gp~LIVvP~sll~qW~~ 122 (773)
+..|||||.+|+.||+.... +..|||+||+||+|||+|+|+++..++...+.. .+.|||||.+++.+|..
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkk 315 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKK 315 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHH
Confidence 45899999999999998631 556789999999999999999999999987662 34599999999999999
Q ss_pred HHHhhcC--CceEEEecCChhHHHHHHHHHH---hhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHH
Q 004103 123 EFSTWAP--SIAAVVYDGRPDERKAMREEFF---SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECAL 197 (773)
Q Consensus 123 E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~---~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~ 197 (773)
||.+|.. .+....+.|...+.-.-...+. ...-..-|++.+|+.+..+...+....+++||+||+|++||..+.+
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~ 395 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLT 395 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHH
Confidence 9999985 5777777777665111111111 1113356999999999999999999999999999999999999999
Q ss_pred HHHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHH--HHHHHHHHhhhh
Q 004103 198 AKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQ--LLIIRRLHHVIR 275 (773)
Q Consensus 198 ~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~--~~~~~~L~~~L~ 275 (773)
.++|..+.+++|++|||||+||++.|++++|+|+.|+.+++...|...|..+.........+.++. ...+..|..+..
T Consensus 396 ~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~ 475 (776)
T KOG0390|consen 396 LKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTN 475 (776)
T ss_pred HHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998877755544333322 234788999999
Q ss_pred hhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccc-----
Q 004103 276 PFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVG----- 350 (773)
Q Consensus 276 p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~----- 350 (773)
.|++||+.+...+.||++.+++|.|.+++.|..+|..+.... .... -..........|.++||||.|...
T Consensus 476 ~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~----~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390|consen 476 KFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRT----LKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred hheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhh----hhcchhhHHHHHHHHhcCHHhhccccccc
Confidence 999999999999999999999999999999999999998763 1110 011245566789999999999851
Q ss_pred -cccchhhHHH------------HhhcchHHHHHHHHHHhhh-cCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCC
Q 004103 351 -EYNMWRKEEI------------IRASGKFELLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 416 (773)
Q Consensus 351 -~~~~~~~~~l------------~~~s~K~~~L~~ll~~l~~-~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~ 416 (773)
.........+ ..-|+|+..|+.++...++ ...++++.++++.++++++..+.++|+.++++||+|+
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred ccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 1011111111 1238899999999866544 3356677778899999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHH
Q 004103 417 TEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 496 (773)
Q Consensus 417 ~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiE 496 (773)
..+|+.+++.||++.++.+|||+|+.|||+||||.+|++||+||++|||+.+.||++||+|.||+++|+||+|++.||+|
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiE 710 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIE 710 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHcCccCC
Q 004103 497 EVILERAKQKMGIDAKVIQAGLFNT 521 (773)
Q Consensus 497 e~i~~~~~~K~~l~~~vi~~g~~~~ 521 (773)
|+||+|+..|..+-..|++......
T Consensus 711 Ek~~qrq~~K~~lS~~v~~~~~~~~ 735 (776)
T KOG0390|consen 711 EKIYQRQTHKEGLSSMVFDEEEDVE 735 (776)
T ss_pred HHHHHHHHHhhhhhheEEecccccc
Confidence 9999999999999999987755433
No 11
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=4e-69 Score=598.81 Aligned_cols=533 Identities=29% Similarity=0.454 Sum_probs=427.4
Q ss_pred CCchHHHHHHHHHHHHhh---------cCCCCeEEecCCCCCHHHHHHHHHHHHHHh-cCCCCCEEEEeCCcchHHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLF---------NNNLNGILADEMGLGKTIQTIALIAYLLEN-KGVTGPHVIVAPKAVLPNWINE 123 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~---------~~~~~gILademGlGKTi~aiali~~l~~~-~~~~gp~LIVvP~sll~qW~~E 123 (773)
.+|+|||..||+||.... ..|.|||||+-||||||+|.|+++..++.. +-....+|||||.+++.||..|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 589999999999998752 456688999999999999999999877654 3345689999999999999999
Q ss_pred HHhhcCCce----EEEec----CChhHHHHHHHHHHhhcCCccEEEcCHHHHHHh---------------HHHHhhcCee
Q 004103 124 FSTWAPSIA----AVVYD----GRPDERKAMREEFFSERGRFNVLITHYDLIMRD---------------RQYLKKVQWI 180 (773)
Q Consensus 124 ~~k~~p~~~----v~~~~----g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~---------------~~~l~~~~~~ 180 (773)
|.+|.+++. +-++. ..+..|....+.|+.. --|+|+.|+.+... ...|..-.++
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~---ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD 823 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQED---GGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPD 823 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHHHHHHHHhc---CCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCC
Confidence 999998522 22322 2345666666666654 36999999998642 1123445789
Q ss_pred EEEEccccccCChhhHHHHHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCCh
Q 004103 181 YMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTD 260 (773)
Q Consensus 181 ~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~ 260 (773)
+||+||||-+||..+.+++++..+.+++||+|||||+|||+.|++.+++|+.|+++++..+|...|..|+.++.....+.
T Consensus 824 ~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~ 903 (1567)
T KOG1015|consen 824 FVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADSTM 903 (1567)
T ss_pred eEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877666666
Q ss_pred HHHHHHHHH---HHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhccccc---ccCCCccchHHHH
Q 004103 261 EEQLLIIRR---LHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGL---DTGTGKSKSLQNL 334 (773)
Q Consensus 261 ~~~~~~~~~---L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~---~~~~~~~~~~~~~ 334 (773)
.+-....+| |+.+|..|+-|+--..+...|||+++++|.+.||+.|..+|+..+++....- ..+.|....++.-
T Consensus 904 ~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d~eg~~g~~arlf~d 983 (1567)
T KOG1015|consen 904 VDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGNDSEGGRGAGARLFQD 983 (1567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhccccCCccccccchhhhHHHH
Confidence 554443333 7888999999998888999999999999999999999999999998433221 2233456677888
Q ss_pred HHHHHHHhCCCCcccccc-----------------c-chh----------------------------------------
Q 004103 335 SMQLRKCCNHPYLFVGEY-----------------N-MWR---------------------------------------- 356 (773)
Q Consensus 335 ~~~Lrk~~~hP~l~~~~~-----------------~-~~~---------------------------------------- 356 (773)
...|+++.+||+...... . +..
T Consensus 984 fqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~ 1063 (1567)
T KOG1015|consen 984 FQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVI 1063 (1567)
T ss_pred HHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhh
Confidence 888999999998652100 0 000
Q ss_pred ------------------------------------------------------hHHHHhhcchHHHHHHHHHHhhhcCC
Q 004103 357 ------------------------------------------------------KEEIIRASGKFELLDRLLPKLRKSGH 382 (773)
Q Consensus 357 ------------------------------------------------------~~~l~~~s~K~~~L~~ll~~l~~~g~ 382 (773)
..+.+..|+|+.+|.+||....+-|.
T Consensus 1064 k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGD 1143 (1567)
T KOG1015|consen 1064 KVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGD 1143 (1567)
T ss_pred hhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcc
Confidence 00113358999999999999999999
Q ss_pred cEEEEeecHHHHHHHHHHHHh----------------------CCCeEEEEcCCCCHHHHHHHHHhhcCCCC-CcEEEEE
Q 004103 383 RVLLFSQMTRLMDILEIYLKL----------------------NDFKFLRLDGSTKTEERGTLLKQFNAPDS-PYFMFLL 439 (773)
Q Consensus 383 kvLIFsq~~~~ld~L~~~L~~----------------------~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~-~~~v~Ll 439 (773)
|+|||||....||+|+.||.. .|..|.+|||++...+|+++.++||++.. ..++|||
T Consensus 1144 KlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LI 1223 (1567)
T KOG1015|consen 1144 KLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLI 1223 (1567)
T ss_pred eeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEE
Confidence 999999999999999999963 36689999999999999999999998755 4578999
Q ss_pred ecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHHHHcCcc
Q 004103 440 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 519 (773)
Q Consensus 440 St~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi~~g~~ 519 (773)
||+||++||||-+|++|||||..|||..+.|++-|++|+||+|+|+||||++.||+|++||.|+-.|..+...|++....
T Consensus 1224 STRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv 1303 (1567)
T KOG1015|consen 1224 STRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQV 1303 (1567)
T ss_pred eeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred CCCCCHHHHHHHHHHHHHhccCC-------CCCCCCCHHHHHHHHhcCHHHHHHHHHhhHHHHHhhhhcccccccCcccc
Q 004103 520 NTTSTAQDRREMLKEIMRRGTSS-------LGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPE 592 (773)
Q Consensus 520 ~~~~~~~~~~~~l~~i~~~~~~~-------~~~~~~~~~~~~~l~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 592 (773)
..-.+..+ |-+|..+..+- .....|.+..+..++.-..+-++.|...|---..++ ...|.++..-|.
T Consensus 1304 ~Rhy~~ne----LteLy~fep~~ddp~sEr~~~~lpKdrllae~l~~~q~~i~~y~ehdSll~~~e--~eelteee~k~a 1377 (1567)
T KOG1015|consen 1304 ERHYTMNE----LTELYTFEPDLDDPNSERDTPMLPKDRLLAELLQIHQEHIVGYHEHDSLLDHKE--EEELTEEERKAA 1377 (1567)
T ss_pred HHHhhHhh----hHHHhhcCCccCCcccccccccCCchhHHHHHHHHHHHHhhhhhhhhhhhcchh--HHHHHHHhhhhh
Confidence 44444433 44455554321 223456677888888888887777776664322222 123445555677
Q ss_pred ccc
Q 004103 593 WAY 595 (773)
Q Consensus 593 ~~~ 595 (773)
|..
T Consensus 1378 Wae 1380 (1567)
T KOG1015|consen 1378 WAE 1380 (1567)
T ss_pred hhh
Confidence 754
No 12
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-67 Score=556.08 Aligned_cols=480 Identities=30% Similarity=0.447 Sum_probs=383.3
Q ss_pred chhhHHhhhhccccc-CCCCccCCCCCcCCCCchHHHHHHHHHHHHhhc-CCCCeEEecCCCCCHHHHHHHHHHHHHHhc
Q 004103 25 SSAIVLEWQNLTRSF-ILPQVTEQPTLLQGGELRAYQLEGLQWMLSLFN-NNLNGILADEMGLGKTIQTIALIAYLLENK 102 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~-i~~~~~~~P~~l~~~~LrpyQ~~gv~~l~~~~~-~~~~gILademGlGKTi~aiali~~l~~~~ 102 (773)
-++....|..+..+. ...+-.+||..+. ..|.|||++++.|+..... .-.|||||||||.|||+|+|+++.. .
T Consensus 154 ~pE~~~v~~dlde~~p~i~e~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e 228 (791)
T KOG1002|consen 154 HPELRNVFTDLDEANPVIAERAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----E 228 (791)
T ss_pred CchhhhhhhhhhhcCchhhhcccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----c
Confidence 344444555544322 2344567887776 6899999999999998865 5567899999999999999999875 2
Q ss_pred CCCCCEEEEeCCcchHHHHHHHHhhcC-CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHh-----------
Q 004103 103 GVTGPHVIVAPKAVLPNWINEFSTWAP-SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD----------- 170 (773)
Q Consensus 103 ~~~gp~LIVvP~sll~qW~~E~~k~~p-~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~----------- 170 (773)
....|.|||||...+.||.+|+.++.. ..++++|+|.+..... +.+ ..||||+|||..+...
T Consensus 229 ~~ra~tLVvaP~VAlmQW~nEI~~~T~gslkv~~YhG~~R~~ni--kel----~~YDvVLTty~vvEs~yRk~~~GfrrK 302 (791)
T KOG1002|consen 229 VDRAPTLVVAPTVALMQWKNEIERHTSGSLKVYIYHGAKRDKNI--KEL----MNYDVVLTTYAVVESVYRKQDYGFRRK 302 (791)
T ss_pred cccCCeeEEccHHHHHHHHHHHHHhccCceEEEEEecccccCCH--HHh----hcCcEEEEecHHHHHHHHhcccccccc
Confidence 334589999999999999999999984 5889999998754332 122 6899999999988653
Q ss_pred ------HHHHhhcCeeEEEEccccccCChhhHHHHHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChH----
Q 004103 171 ------RQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVE---- 240 (773)
Q Consensus 171 ------~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~---- 240 (773)
.+.|..++|..||+||||.+|+..+..++++..+.+.+||+|||||+||+..|||+|+.||...+|..+-
T Consensus 303 ngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~c 382 (791)
T KOG1002|consen 303 NGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKC 382 (791)
T ss_pred CCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhc
Confidence 2347788999999999999999999999999999999999999999999999999999999887764320
Q ss_pred -------hH----------------HHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHHhh--cCCCcee
Q 004103 241 -------NF----------------EEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEK--YLPGKSQ 295 (773)
Q Consensus 241 -------~f----------------~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~--~LP~k~e 295 (773)
.| --||+......-.+-..+..+.......|.+|..+|+||++-+-.. .|||...
T Consensus 383 dc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv 462 (791)
T KOG1002|consen 383 DCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIV 462 (791)
T ss_pred cccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccce
Confidence 00 0111111111001111111233445578899999999999865333 3899988
Q ss_pred EEEEecCCHHHHHHHHHHHHhcccccccCC------CccchHHHHHHHHHHHhCCCCccccccc----ch----------
Q 004103 296 VILKCDMSAWQKVYYQQVTDVGRVGLDTGT------GKSKSLQNLSMQLRKCCNHPYLFVGEYN----MW---------- 355 (773)
Q Consensus 296 ~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~------~~~~~~~~~~~~Lrk~~~hP~l~~~~~~----~~---------- 355 (773)
.+-.--++..+..+|+.+.......++..- ......+.++.++|+.++||+|...... ..
T Consensus 463 ~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc 542 (791)
T KOG1002|consen 463 TVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLC 542 (791)
T ss_pred eeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeeccc
Confidence 888888899999999999876554443322 2334566788899999999998753100 00
Q ss_pred ---hh---------------------------------------------------------H--------HHHhhcchH
Q 004103 356 ---RK---------------------------------------------------------E--------EIIRASGKF 367 (773)
Q Consensus 356 ---~~---------------------------------------------------------~--------~l~~~s~K~ 367 (773)
.. . .-+..|.|+
T Consensus 543 ~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKI 622 (791)
T KOG1002|consen 543 HDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKI 622 (791)
T ss_pred CChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHH
Confidence 00 0 014568999
Q ss_pred HHHHHHHHHhhhcC--CcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccc
Q 004103 368 ELLDRLLPKLRKSG--HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 445 (773)
Q Consensus 368 ~~L~~ll~~l~~~g--~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg 445 (773)
++|.+-|..+.+.+ -|.||||||+.++|+|.-.|...|+..+.+.|+|++..|...|+.|.+ +.++.|||+|..|||
T Consensus 623 EAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGG 701 (791)
T KOG1002|consen 623 EALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGG 701 (791)
T ss_pred HHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCc
Confidence 99999999887654 489999999999999999999999999999999999999999999988 788999999999999
Q ss_pred ccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHHHHc
Q 004103 446 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 516 (773)
Q Consensus 446 ~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi~~ 516 (773)
+.|||+.|.+|.++||+|||+...||++|+|||||.++|+|.+|+.++|||++|++.+++|..++++.|++
T Consensus 702 VALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~q 772 (791)
T KOG1002|consen 702 VALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQ 772 (791)
T ss_pred eEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765
No 13
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.6e-66 Score=565.30 Aligned_cols=468 Identities=28% Similarity=0.470 Sum_probs=389.0
Q ss_pred CCccCCCCCcCCCCchHHHHHHHHHHHHhhcC-CCCeEEecCCCCCHHHHHHHHHHHHHHhc-------CCCCCEEEEeC
Q 004103 42 PQVTEQPTLLQGGELRAYQLEGLQWMLSLFNN-NLNGILADEMGLGKTIQTIALIAYLLENK-------GVTGPHVIVAP 113 (773)
Q Consensus 42 ~~~~~~P~~l~~~~LrpyQ~~gv~~l~~~~~~-~~~gILademGlGKTi~aiali~~l~~~~-------~~~gp~LIVvP 113 (773)
...++.|..+. ..|.|||..|+.||+.+..+ +.+|||||+||+|||+++|++|.+..... ....++|||||
T Consensus 313 t~lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P 391 (901)
T KOG4439|consen 313 TDLTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP 391 (901)
T ss_pred ccccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc
Confidence 34556666654 78999999999999988544 56789999999999999999998776531 22337999999
Q ss_pred CcchHHHHHHHHhhcC--CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHH----------hHHHHhhcCeeE
Q 004103 114 KAVLPNWINEFSTWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMR----------DRQYLKKVQWIY 181 (773)
Q Consensus 114 ~sll~qW~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~----------~~~~l~~~~~~~ 181 (773)
.+++.||..|+++-.. .+.|++|+|+.. |..-...+ ..||||||||..+.+ +...|..+.|.+
T Consensus 392 aSli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i~~~~L----~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~R 466 (901)
T KOG4439|consen 392 ASLIHQWEAEVARRLEQNALSVYLYHGPNK-REISAKEL----RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSR 466 (901)
T ss_pred HHHHHHHHHHHHHHHhhcceEEEEecCCcc-ccCCHHHH----hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHH
Confidence 9999999999998763 488999999874 22111222 689999999999876 245688899999
Q ss_pred EEEccccccCChhhHHHHHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChH
Q 004103 182 MIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDE 261 (773)
Q Consensus 182 vIiDEaH~lkn~~s~~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~ 261 (773)
||+||||.++|++++-+.+++.+.+..||+|||||+||++.|+|+|+.||.-.+|++...|.++...+-...
T Consensus 467 VILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g-------- 538 (901)
T KOG4439|consen 467 VILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG-------- 538 (901)
T ss_pred hhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc--------
Confidence 999999999999999999999999999999999999999999999999999999999999998886543221
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHhh-----cCCCceeEEEEecCCHHHHHHHHHHHHhccccccc-------------
Q 004103 262 EQLLIIRRLHHVIRPFILRRKKDEVEK-----YLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT------------- 323 (773)
Q Consensus 262 ~~~~~~~~L~~~L~p~~lRR~k~dv~~-----~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~------------- 323 (773)
-.+|.-+.++.||||+|...-. .||.+...++.++|+..+...|+-+.+..+..+..
T Consensus 539 -----~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~ 613 (901)
T KOG4439|consen 539 -----ANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGG 613 (901)
T ss_pred -----hhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccC
Confidence 3567777899999999988765 79999999999999999999999887643321100
Q ss_pred ---------------------------CC--CccchHHHHHHHHHHHhCCCCcccccccchh------------------
Q 004103 324 ---------------------------GT--GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR------------------ 356 (773)
Q Consensus 324 ---------------------------~~--~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~------------------ 356 (773)
++ .....+..++++||++|+||.+.....+...
T Consensus 614 ~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~ 693 (901)
T KOG4439|consen 614 YQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDN 693 (901)
T ss_pred ccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhH
Confidence 00 0112356678899999999966543221110
Q ss_pred ------------------------hHH---HHhhcchHHHHHHHHHHh-hhcCCcEEEEeecHHHHHHHHHHHHhCCCeE
Q 004103 357 ------------------------KEE---IIRASGKFELLDRLLPKL-RKSGHRVLLFSQMTRLMDILEIYLKLNDFKF 408 (773)
Q Consensus 357 ------------------------~~~---l~~~s~K~~~L~~ll~~l-~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~ 408 (773)
... ..+.|.|+..+..++..+ .....|++|.|||+.+++++...|...|+.|
T Consensus 694 l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y 773 (901)
T KOG4439|consen 694 LAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIY 773 (901)
T ss_pred HHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeee
Confidence 001 123688999999999887 5678899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEE
Q 004103 409 LRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 488 (773)
Q Consensus 409 ~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~r 488 (773)
..++|....++|+.+++.||......+|+|+|..|||+||||..|+|+|++|..|||+-+.||.+|++|+||+|+|.|||
T Consensus 774 ~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR 853 (901)
T KOG4439|consen 774 TSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHR 853 (901)
T ss_pred eeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEE
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHhHHHHHHHcCcc--CCCCCHHHH
Q 004103 489 LVSVGSIEEVILERAKQKMGIDAKVIQAGLF--NTTSTAQDR 528 (773)
Q Consensus 489 Li~~~tiEe~i~~~~~~K~~l~~~vi~~g~~--~~~~~~~~~ 528 (773)
|++.||+|++|...+..|++++..|+.+... .+..+..+.
T Consensus 854 ~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adl 895 (901)
T KOG4439|consen 854 LMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADL 895 (901)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHH
Confidence 9999999999999999999999999985433 334454443
No 14
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=6.6e-65 Score=623.59 Aligned_cols=471 Identities=44% Similarity=0.704 Sum_probs=411.2
Q ss_pred ccCCCC-CcCCCCchHHHHHHHHHHH-HhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC-CCCEEEEeCCcchHHH
Q 004103 44 VTEQPT-LLQGGELRAYQLEGLQWML-SLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPKAVLPNW 120 (773)
Q Consensus 44 ~~~~P~-~l~~~~LrpyQ~~gv~~l~-~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~-~gp~LIVvP~sll~qW 120 (773)
....|. .....+|+|||.+|++|+. .++....+|||||+||+|||+|+|+++.++...... .+|+|||||.+++.||
T Consensus 326 ~~~~~~~~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw 405 (866)
T COG0553 326 LLNAPEPVDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNW 405 (866)
T ss_pred hhccCchhhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHH
Confidence 334443 3334789999999999999 788999999999999999999999999987766555 5899999999999999
Q ss_pred HHHHHhhcCCce-EEEecCChhH----HHHHHHHHHhh-cCCccEEEcCHHHHHH---hHHHHhhcCeeEEEEccccccC
Q 004103 121 INEFSTWAPSIA-AVVYDGRPDE----RKAMREEFFSE-RGRFNVLITHYDLIMR---DRQYLKKVQWIYMIVDEGHRLK 191 (773)
Q Consensus 121 ~~E~~k~~p~~~-v~~~~g~~~~----r~~~~~~~~~~-~~~~~VvItTye~l~~---~~~~l~~~~~~~vIiDEaH~lk 191 (773)
..|+.+|.|..+ +.+++|.... +..+....... ...++++++||+.+.. +...+..+.|+++|+||||++|
T Consensus 406 ~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ik 485 (866)
T COG0553 406 KREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIK 485 (866)
T ss_pred HHHHhhhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHh
Confidence 999999999999 9999998863 44443332110 0138999999999999 9999999999999999999999
Q ss_pred ChhhHHHHHHHccccceEEEecCCCCCCCHHHHHHhhc-cccCCCCC-ChHhHHHHhcccccccCCccCChHHHHHHHHH
Q 004103 192 NHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLN-FLLPTIFN-SVENFEEWFNAPFKDRGQVALTDEEQLLIIRR 269 (773)
Q Consensus 192 n~~s~~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~-~L~p~~~~-~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~ 269 (773)
|..+..++++..+++.++++|||||++|++.|||++++ |+.|..++ +...|..||..+......... .+.....+.+
T Consensus 486 n~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~ 564 (866)
T COG0553 486 NDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP-LEARELGIEL 564 (866)
T ss_pred hhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc-hhhHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999 569999999998776554332 3444556677
Q ss_pred HHhhhhhhhhhhhhhH--HhhcCCCceeEEEEecCCHHHHHHHHHHHH---hcccccccC---CC-------ccchHHHH
Q 004103 270 LHHVIRPFILRRKKDE--VEKYLPGKSQVILKCDMSAWQKVYYQQVTD---VGRVGLDTG---TG-------KSKSLQNL 334 (773)
Q Consensus 270 L~~~L~p~~lRR~k~d--v~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~---~~~~~~~~~---~~-------~~~~~~~~ 334 (773)
|+.+++||++||.+.+ +...||++.+.++.|++++.|..+|..... .....+... .. ....+.+.
T Consensus 565 l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 644 (866)
T COG0553 565 LRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILAL 644 (866)
T ss_pred HHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHH
Confidence 9999999999999999 888999999999999999999999999887 333222211 11 14568889
Q ss_pred HHHHHHHhCCCCccccc-ccch---------------hhHHHHhhc-chHHHHHHHH-HHhhhcCC--cEEEEeecHHHH
Q 004103 335 SMQLRKCCNHPYLFVGE-YNMW---------------RKEEIIRAS-GKFELLDRLL-PKLRKSGH--RVLLFSQMTRLM 394 (773)
Q Consensus 335 ~~~Lrk~~~hP~l~~~~-~~~~---------------~~~~l~~~s-~K~~~L~~ll-~~l~~~g~--kvLIFsq~~~~l 394 (773)
++.|+++|+||.++... .... ....++..+ +|+..+.+++ ..+...|+ ++|||+|++.++
T Consensus 645 ~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l 724 (866)
T COG0553 645 LTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVL 724 (866)
T ss_pred HHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHH
Confidence 99999999999999876 2111 122456677 9999999999 89999999 999999999999
Q ss_pred HHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhh
Q 004103 395 DILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDR 474 (773)
Q Consensus 395 d~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gR 474 (773)
++|+.+|...++.|++++|+++..+|..+++.|+++ ...+||++|++|||.||||+.|++||+||++|||+.+.||++|
T Consensus 725 ~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dR 803 (866)
T COG0553 725 DLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDR 803 (866)
T ss_pred HHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHH
Confidence 999999999999999999999999999999999996 5678999999999999999999999999999999999999999
Q ss_pred hhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHHHHc
Q 004103 475 AHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 516 (773)
Q Consensus 475 a~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi~~ 516 (773)
+||+||+++|.||+|++.+|+||+|+.++..|..+...++++
T Consensus 804 a~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 804 AHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred HHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999986
No 15
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-58 Score=487.80 Aligned_cols=418 Identities=27% Similarity=0.377 Sum_probs=329.9
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceE-
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAA- 133 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v- 133 (773)
.|.|||.+||.+.+. .+++++||||||||||+|||+++.|++..+ |.|||||.++...|..++.+|+|....
T Consensus 198 ~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyraEw----plliVcPAsvrftWa~al~r~lps~~pi 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRAEW----PLLIVCPASVRFTWAKALNRFLPSIHPI 270 (689)
T ss_pred hhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhhcC----cEEEEecHHHhHHHHHHHHHhcccccce
Confidence 699999999999986 778889999999999999999999998875 999999999999999999999997554
Q ss_pred EEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc--ccceEEE
Q 004103 134 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY--QIQRRLL 211 (773)
Q Consensus 134 ~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~--~~~~rll 211 (773)
.+..+..+.-..+ .....|.|++|+.+......|..-+|.+||+||+|++|+..++..+++..+ ...|.+|
T Consensus 271 ~vv~~~~D~~~~~-------~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvIL 343 (689)
T KOG1000|consen 271 FVVDKSSDPLPDV-------CTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVIL 343 (689)
T ss_pred EEEecccCCcccc-------ccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEE
Confidence 3333333211100 012459999999999999999999999999999999999999999888665 6889999
Q ss_pred ecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhh-hhhhhhhhHHhhcC
Q 004103 212 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP-FILRRKKDEVEKYL 290 (773)
Q Consensus 212 LTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p-~~lRR~k~dv~~~L 290 (773)
|||||--..+.|||.++..+++.+|.+..+|...|+..-....- .+..+-.+..+|+-+|.. .|+||+|.+|..+|
T Consensus 344 LSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~---~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qL 420 (689)
T KOG1000|consen 344 LSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFC---FDYKGCTNLEELAALLFKRLMIRRLKADVLKQL 420 (689)
T ss_pred ecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCcccccee---eecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999998777643221110 011111224456666644 58999999999999
Q ss_pred CCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHH
Q 004103 291 PGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELL 370 (773)
Q Consensus 291 P~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L 370 (773)
|+|...++. .....+-+.-..+......... .. .|+-.+.|-- ++. -...-.|+..+
T Consensus 421 PpKrr~Vv~-~~~gr~da~~~~lv~~a~~~t~-----~~-----~~e~~~~~l~--l~y----------~~tgiaK~~av 477 (689)
T KOG1000|consen 421 PPKRREVVY-VSGGRIDARMDDLVKAAADYTK-----VN-----SMERKHESLL--LFY----------SLTGIAKAAAV 477 (689)
T ss_pred CccceEEEE-EcCCccchHHHHHHHHhhhcch-----hh-----hhhhhhHHHH--HHH----------HHhcccccHHH
Confidence 999555444 3333333333333332221000 00 0000111100 000 01234466666
Q ss_pred HHHHHH----hhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccc
Q 004103 371 DRLLPK----LRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL 446 (773)
Q Consensus 371 ~~ll~~----l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~ 446 (773)
.+.|.. ..+.+.|+|||+++..++|-|+.++..+++..+||||+|+..+|+.+++.|+. +..+.|-++|..|+|.
T Consensus 478 ~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~-seev~VAvlsItA~gv 556 (689)
T KOG1000|consen 478 CEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQT-SEEVRVAVLSITAAGV 556 (689)
T ss_pred HHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhcc-ccceEEEEEEEeeccc
Confidence 666655 45678999999999999999999999999999999999999999999999998 5568999999999999
Q ss_pred cCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHH
Q 004103 447 GLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKV 513 (773)
Q Consensus 447 GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~v 513 (773)
||+|++|+.|||.+++|||...+||.+|+||+||+..|.||+|++++|+|+.+|..+++|+.....+
T Consensus 557 GLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~ 623 (689)
T KOG1000|consen 557 GLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSV 623 (689)
T ss_pred ceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999887765
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=9.8e-58 Score=499.32 Aligned_cols=470 Identities=29% Similarity=0.492 Sum_probs=378.1
Q ss_pred CCchHHHHHHHHHHHHh-------h--cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHH
Q 004103 54 GELRAYQLEGLQWMLSL-------F--NNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 124 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~-------~--~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~ 124 (773)
..++|||+-||+||+.. | ..+.+||||+.||||||+|.|+++--+++.. ..+.+|+|+|-.++.||..||
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT-~AKtVL~ivPiNTlQNWlsEf 331 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHT-KAKTVLVIVPINTLQNWLSEF 331 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcC-ccceEEEEEehHHHHHHHHHh
Confidence 47999999999998764 2 3466899999999999999999998888753 456899999999999999999
Q ss_pred HhhcCC-----------ceEEEecCCh---hHHHHHHHHHHhhcCCccEEEcCHHHHHHh--------------------
Q 004103 125 STWAPS-----------IAAVVYDGRP---DERKAMREEFFSERGRFNVLITHYDLIMRD-------------------- 170 (773)
Q Consensus 125 ~k~~p~-----------~~v~~~~g~~---~~r~~~~~~~~~~~~~~~VvItTye~l~~~-------------------- 170 (773)
..|.|. +.|.+..... ..|..+...|.. .--|+++.|+++.--
T Consensus 332 nmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~---~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~ 408 (1387)
T KOG1016|consen 332 NMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQ---TGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISS 408 (1387)
T ss_pred hhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhc---cCCEEEehHHHHHHHHHhcccccCCccccccccCC
Confidence 999975 2344444333 334444444443 445999999988421
Q ss_pred ------------------HHHHhhcCeeEEEEccccccCChhhHHHHHHHccccceEEEecCCCCCCCHHHHHHhhcccc
Q 004103 171 ------------------RQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLL 232 (773)
Q Consensus 171 ------------------~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~ 232 (773)
...|-+-..++||+||+|++||....++.+|+.+++++|+.|||-|+|||+-|+|.+++|+.
T Consensus 409 ~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVR 488 (1387)
T KOG1016|consen 409 GFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVR 488 (1387)
T ss_pred cccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheecc
Confidence 11244457899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHhHHHHhcccccccCCccCChHHHHHHH---HHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHH
Q 004103 233 PTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLII---RRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVY 309 (773)
Q Consensus 233 p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~---~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~ 309 (773)
|+.+++..+|...|.+|+.++.-+..++.+-.... +.||.+|..|+.||.-..+...||.+.|+++.+.+|..|+++
T Consensus 489 P~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR~L 568 (1387)
T KOG1016|consen 489 PKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQRQL 568 (1387)
T ss_pred ccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHHHH
Confidence 99999999999999999999887777776655543 448999999999999988888899999999999999999999
Q ss_pred HHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCccccccc--------chhh------------------------
Q 004103 310 YQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYN--------MWRK------------------------ 357 (773)
Q Consensus 310 Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~--------~~~~------------------------ 357 (773)
|+++...............-.+.....-..|+.|||-+...... ....
T Consensus 569 Y~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~ 648 (1387)
T KOG1016|consen 569 YRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPST 648 (1387)
T ss_pred HHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCC
Confidence 99988544333222222222334444456677788865432000 0000
Q ss_pred -----------------------------------------------HHHHhhcchHHHHHHHHHHhhhcCCcEEEEeec
Q 004103 358 -----------------------------------------------EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQM 390 (773)
Q Consensus 358 -----------------------------------------------~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~ 390 (773)
..+...++|+-.+.+++..-..-|.++|||||.
T Consensus 649 ~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~fSq~ 728 (1387)
T KOG1016|consen 649 PLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIFSQN 728 (1387)
T ss_pred cccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEEeecc
Confidence 001223445555555555555568999999999
Q ss_pred HHHHHHHHHHHHhC------------------CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCccc
Q 004103 391 TRLMDILEIYLKLN------------------DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 452 (773)
Q Consensus 391 ~~~ld~L~~~L~~~------------------g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ 452 (773)
...++.|+++|..+ ...|++++|.++..+|+++|++||+..+-...|++||++|..||||-+
T Consensus 729 l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIs 808 (1387)
T KOG1016|consen 729 LTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLIS 808 (1387)
T ss_pred hhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeec
Confidence 99999999999764 235999999999999999999999976656799999999999999999
Q ss_pred CCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHHHHcCccCCCCCHHH
Q 004103 453 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQD 527 (773)
Q Consensus 453 ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi~~g~~~~~~~~~~ 527 (773)
|+.+|+||..|||..+.||.+|++|.||+|+|.||||++.+++|.+||.|+-.|..+...|.+.-..+...+..+
T Consensus 809 anr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~an~s~Ke 883 (1387)
T KOG1016|consen 809 ANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDANISQKE 883 (1387)
T ss_pred cceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998765555555444
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.8e-55 Score=523.56 Aligned_cols=429 Identities=21% Similarity=0.265 Sum_probs=321.9
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceE
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAA 133 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v 133 (773)
..|.|||+..+.+++..+ ..+.|||||||+|||++|++++.++... +..+|+|||||.+|+.||..|+.+|+ ++..
T Consensus 151 ~~l~pHQl~~~~~vl~~~--~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~rvLIVvP~sL~~QW~~El~~kF-~l~~ 226 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRH--APRVLLADEVGLGKTIEAGMIIHQQLLT-GRAERVLILVPETLQHQWLVEMLRRF-NLRF 226 (956)
T ss_pred CCCCHHHHHHHHHHhhcc--CCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCCcEEEEcCHHHHHHHHHHHHHHh-CCCe
Confidence 479999999998876543 4568999999999999999999888765 55679999999999999999998887 4566
Q ss_pred EEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhH---HHHhhcCeeEEEEccccccCCh---hhHHHHHHHcc--c
Q 004103 134 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR---QYLKKVQWIYMIVDEGHRLKNH---ECALAKTISGY--Q 205 (773)
Q Consensus 134 ~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~---~~l~~~~~~~vIiDEaH~lkn~---~s~~~~~l~~~--~ 205 (773)
.++.+....... ..-.+....++++|+||+.+.++. ..+....|++|||||||++++. .++.++.+..+ .
T Consensus 227 ~i~~~~~~~~~~--~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~ 304 (956)
T PRK04914 227 SLFDEERYAEAQ--HDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV 304 (956)
T ss_pred EEEcCcchhhhc--ccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc
Confidence 666654322110 000012235789999999998754 4466679999999999999853 45667777666 5
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcc--cc-------cccCCccCChHH--------------
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNA--PF-------KDRGQVALTDEE-------------- 262 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~--~~-------~~~~~~~~~~~~-------------- 262 (773)
++++|+|||||++|+..|+|++|++|+|+.|++...|...... +. ..... ++...
T Consensus 305 ~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~--~~~~~~~~l~~ll~~~~~~ 382 (956)
T PRK04914 305 IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEK--LSDDALNALGELLGEQDIE 382 (956)
T ss_pred cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCc--CCHHHHHHHHHHhcccchh
Confidence 7899999999999999999999999999999999999764432 11 00100 00000
Q ss_pred ----------------HHHHHHHHHh--hhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccC
Q 004103 263 ----------------QLLIIRRLHH--VIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTG 324 (773)
Q Consensus 263 ----------------~~~~~~~L~~--~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~ 324 (773)
....+..|.. -..++|+|+++.+|.. +|++....+.+++.+.....+....
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~-fp~R~~~~~~l~~~~~y~~~~~~~~---------- 451 (956)
T PRK04914 383 PLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKG-FPKRELHPIPLPLPEQYQTAIKVSL---------- 451 (956)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcC-CCcCceeEeecCCCHHHHHHHHHhH----------
Confidence 0111111111 1236788999999875 8999999999998764333332100
Q ss_pred CCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHH-Hh
Q 004103 325 TGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL-KL 403 (773)
Q Consensus 325 ~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L-~~ 403 (773)
...++. +.+|......+. ....-+..++|++.|.+++.... +.|+||||++..+++.|...| ..
T Consensus 452 ----------~~~~~~-~l~pe~~~~~~~--~~~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~~~L~~~L~~~ 516 (956)
T PRK04914 452 ----------EARARD-MLYPEQIYQEFE--DNATWWNFDPRVEWLIDFLKSHR--SEKVLVICAKAATALQLEQALRER 516 (956)
T ss_pred ----------HHHHHh-hcCHHHHHHHHh--hhhhccccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHHHHHHHHHhhc
Confidence 001111 112210000000 00111245689999999998753 779999999999999999999 56
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCe
Q 004103 404 NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 483 (773)
Q Consensus 404 ~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~ 483 (773)
.|+++..+||+++..+|.++++.|++++.... +||||.+||+|+|++.|++||+||+||||..++||+||+||+||+++
T Consensus 517 ~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~-VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~ 595 (956)
T PRK04914 517 EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQ-VLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHD 595 (956)
T ss_pred cCeeEEEEECCCCHHHHHHHHHHHhcCCCCcc-EEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCce
Confidence 79999999999999999999999998543333 68899999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCHHHHHHHHHHHHHhHHHHHHHcC
Q 004103 484 VRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG 517 (773)
Q Consensus 484 V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi~~g 517 (773)
|.||.++.++|+++.|+.....|+++...++..|
T Consensus 596 V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~ 629 (956)
T PRK04914 596 IQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTG 629 (956)
T ss_pred EEEEEccCCCCHHHHHHHHHhhhcCceeccCCCH
Confidence 9999999999999999999999998877665443
No 18
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=1.3e-54 Score=491.63 Aligned_cols=390 Identities=45% Similarity=0.728 Sum_probs=355.3
Q ss_pred ccCCCCCcC--CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHH
Q 004103 44 VTEQPTLLQ--GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 121 (773)
Q Consensus 44 ~~~~P~~l~--~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~ 121 (773)
...+|..+. ++.|.+||.+|++|+...+..+..+|||||||+|||++++.++..+.......+|+|+++|.+++.+|.
T Consensus 282 ~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe 361 (696)
T KOG0383|consen 282 YEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWE 361 (696)
T ss_pred cccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCC
Confidence 345666665 589999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred HHHHhhcCCceEEEecCChhHHHHHHHHHHh------------------hcCCccEEEcCHHHHHHhHHHHhhcCeeEEE
Q 004103 122 NEFSTWAPSIAAVVYDGRPDERKAMREEFFS------------------ERGRFNVLITHYDLIMRDRQYLKKVQWIYMI 183 (773)
Q Consensus 122 ~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~------------------~~~~~~VvItTye~l~~~~~~l~~~~~~~vI 183 (773)
.|+..|+|...++.|.|....+..+++..+. ....++|.+++|+.+..+...+..+.|.++|
T Consensus 362 ~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~li 441 (696)
T KOG0383|consen 362 REFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLI 441 (696)
T ss_pred CchhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeE
Confidence 9999999999999999999988877643221 1356889999999999999999999999999
Q ss_pred EccccccCChhhHHHHHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHH
Q 004103 184 VDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQ 263 (773)
Q Consensus 184 iDEaH~lkn~~s~~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~ 263 (773)
+||+|+++|..+++...+..++..++++|||||++|++.+|+++|+||.|..|++...|.+.|... -.
T Consensus 442 vde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~------------~~ 509 (696)
T KOG0383|consen 442 VDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI------------SC 509 (696)
T ss_pred eechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh------------hH
Confidence 999999999999999999999999999999999999999999999999999999998887776542 23
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhC
Q 004103 264 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 343 (773)
Q Consensus 264 ~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~ 343 (773)
...+..||.++.|+++||++.|+.+.+|.|.+.++.+.|++.|+++|+.+.......+.. .+...++.|++|+|+|+|+
T Consensus 510 ~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-~~~~~s~~n~~mel~K~~~ 588 (696)
T KOG0383|consen 510 EEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-GVHQYSLLNIVMELRKQCN 588 (696)
T ss_pred HHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-cchhHHHHHHHHHHHHhhc
Confidence 345889999999999999999999999999999999999999999999999877766655 4566789999999999999
Q ss_pred CCCccccccc-----chhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHH
Q 004103 344 HPYLFVGEYN-----MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTE 418 (773)
Q Consensus 344 hP~l~~~~~~-----~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~ 418 (773)
|||++..... .+....++.+++|+.+|..++++++..||||+||+||+.++|+|++++...+ .|.|+||..+..
T Consensus 589 hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~ 667 (696)
T KOG0383|consen 589 HPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGP 667 (696)
T ss_pred CcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccch
Confidence 9999988222 2234567899999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeccccccc
Q 004103 419 ERGTLLKQFNAPDSPYFMFLLSTRAGGLG 447 (773)
Q Consensus 419 eR~~~i~~Fn~~~~~~~v~LlSt~agg~G 447 (773)
+|+.+|++||.+++..|+||+||+|||.|
T Consensus 668 ~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 668 ERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999999999999999999988
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=5.2e-49 Score=452.88 Aligned_cols=439 Identities=29% Similarity=0.461 Sum_probs=358.1
Q ss_pred HHHHHHHHHHHHhh-cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC------CCCCEEEEeCCcchHHHHHHHHhhcC-
Q 004103 58 AYQLEGLQWMLSLF-NNNLNGILADEMGLGKTIQTIALIAYLLENKG------VTGPHVIVAPKAVLPNWINEFSTWAP- 129 (773)
Q Consensus 58 pyQ~~gv~~l~~~~-~~~~~gILademGlGKTi~aiali~~l~~~~~------~~gp~LIVvP~sll~qW~~E~~k~~p- 129 (773)
.+|..+..|+-... ....+||+||+||+|||+++|+++........ ..+..|||||.+++.||..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 55555444444432 33457899999999999999999876654443 45678999999999999999966653
Q ss_pred -CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccce
Q 004103 130 -SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQR 208 (773)
Q Consensus 130 -~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~ 208 (773)
.+.+.+|+| |...... ...++||||||..+.. ..+..+.|-+||+||||.++|.++..++++..+.+.+
T Consensus 215 ~~l~v~v~~g----r~kd~~e----l~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~ 284 (674)
T KOG1001|consen 215 DKLSIYVYHG----RTKDKSE----LNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKY 284 (674)
T ss_pred cceEEEEecc----cccccch----hcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeeccce
Confidence 577888898 1111111 2678999999999976 5566789999999999999999999999999999999
Q ss_pred EEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHH--
Q 004103 209 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV-- 286 (773)
Q Consensus 209 rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv-- 286 (773)
||.|||||+||++.++|+++.|+.-.++.....|...+..|+..... .....++..+|.++++||+|..-
T Consensus 285 RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~--------~~~~k~l~~~L~~v~lrrtK~~~~~ 356 (674)
T KOG1001|consen 285 RWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY--------KEGVKTLQGILKKVMLRRTKEMEVD 356 (674)
T ss_pred eeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH--------HHHHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999888888776654321 34577888999999999988632
Q ss_pred ---hhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCC------CccchHHHHHHHHHHHhCCCCcccccccchh-
Q 004103 287 ---EKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT------GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR- 356 (773)
Q Consensus 287 ---~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~------~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~- 356 (773)
.-.||++...++.++++..+..+|..+............ .........+.+||++|+||.++........
T Consensus 357 gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~ 436 (674)
T KOG1001|consen 357 GKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGD 436 (674)
T ss_pred CccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhcccc
Confidence 235899999999999999999999999876654433211 1234455666789999999988753210000
Q ss_pred ----------------------------------------------------------------hHHHHh----------
Q 004103 357 ----------------------------------------------------------------KEEIIR---------- 362 (773)
Q Consensus 357 ----------------------------------------------------------------~~~l~~---------- 362 (773)
...++.
T Consensus 437 ~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~ 516 (674)
T KOG1001|consen 437 SGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIIND 516 (674)
T ss_pred ccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhh
Confidence 000111
Q ss_pred ---hcchHHHHHHHHHHhhhcCC-cEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 004103 363 ---ASGKFELLDRLLPKLRKSGH-RVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 438 (773)
Q Consensus 363 ---~s~K~~~L~~ll~~l~~~g~-kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~L 438 (773)
.+.|+..+.++|........ +++||||++.++++++..|...++.+.+++|.++...|.+.+..|+. +....|++
T Consensus 517 ~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~-~~~~~vll 595 (674)
T KOG1001|consen 517 LLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPC-DPLVTALL 595 (674)
T ss_pred ccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhccccc-CccHHHHH
Confidence 16677777788775544444 99999999999999999999999999999999999999999999994 66788999
Q ss_pred EecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHHHH
Q 004103 439 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQ 515 (773)
Q Consensus 439 lSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi~ 515 (773)
+|.+|||.||||+.|++|+++|++|||..+.||++||||+||+++|.|++|+..+|+|++|+..+++|..+...++.
T Consensus 596 ~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 596 MSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFG 672 (674)
T ss_pred HHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776653
No 20
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.4e-41 Score=390.37 Aligned_cols=342 Identities=19% Similarity=0.324 Sum_probs=255.8
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc--C
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--P 129 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~--p 129 (773)
..+|||||.+++.++... ....+||+..+||+|||++++++++.+ .+++|||||. .++.||.++|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~~~-gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHhc-CCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 468999999999988641 112579999999999999999888765 2589999998 55899999999997 3
Q ss_pred CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHh----------HHHHhhcCeeEEEEccccccCChhhHHHH
Q 004103 130 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD----------RQYLKKVQWIYMIVDEGHRLKNHECALAK 199 (773)
Q Consensus 130 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~----------~~~l~~~~~~~vIiDEaH~lkn~~s~~~~ 199 (773)
...+..|.|...... .....|+|+||+++... ...|....|++||+||||++.+ ....+
T Consensus 326 ~~~I~~~tg~~k~~~---------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~ 394 (732)
T TIGR00603 326 DSQICRFTSDAKERF---------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--AMFRR 394 (732)
T ss_pred CceEEEEecCccccc---------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--HHHHH
Confidence 456677777543211 13467999999998643 2345556899999999999953 44556
Q ss_pred HHHccccceEEEecCCCCCCCHHHHHHhhccc-cCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhh
Q 004103 200 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFL-LPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 278 (773)
Q Consensus 200 ~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L-~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~ 278 (773)
++..+.+.+||+|||||++++- .+..++++ .|.+|.
T Consensus 395 il~~l~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vye----------------------------------------- 431 (732)
T TIGR00603 395 VLTIVQAHCKLGLTATLVREDD--KITDLNFLIGPKLYE----------------------------------------- 431 (732)
T ss_pred HHHhcCcCcEEEEeecCcccCC--chhhhhhhcCCeeee-----------------------------------------
Confidence 7778889999999999998763 23333332 343321
Q ss_pred hhhhhhHHh--hcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchh
Q 004103 279 LRRKKDEVE--KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 356 (773)
Q Consensus 279 lRR~k~dv~--~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~ 356 (773)
....++. ..|.+.....++|+|++.....|...... .+ ..| +
T Consensus 432 --~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~-----------~k------~~l--~--------------- 475 (732)
T TIGR00603 432 --ANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSR-----------KR------MLL--Y--------------- 475 (732)
T ss_pred --cCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcch-----------hh------hHH--h---------------
Confidence 1111221 23666677789999998765544321100 00 000 0
Q ss_pred hHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCC-CCCcE
Q 004103 357 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAP-DSPYF 435 (773)
Q Consensus 357 ~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~-~~~~~ 435 (773)
..+..|+..+..++......++++||||+++..++.+...| +. ..|+|.|+..+|..++++|+.+ ..+
T Consensus 476 ----~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~-- 544 (732)
T TIGR00603 476 ----VMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVN-- 544 (732)
T ss_pred ----hhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCcc--
Confidence 12346889998988876678999999999999888888877 33 4589999999999999999864 323
Q ss_pred EEEEecccccccCCcccCCeeEEeCCCC-ChhhHHHHhhhhhhcCCcCe-----EEEEEEEeCCCHHHHHHHHH
Q 004103 436 MFLLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKE-----VRVFVLVSVGSIEEVILERA 503 (773)
Q Consensus 436 v~LlSt~agg~GLNL~~ad~VI~~D~~w-Np~~~~Qa~gRa~RiGQ~k~-----V~V~rLi~~~tiEe~i~~~~ 503 (773)
+|++|++|++|||++.|++||++++++ |+..+.||.||++|.+..+. ..+|.|++.+|.|+....+-
T Consensus 545 -vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~R 617 (732)
T TIGR00603 545 -TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKR 617 (732)
T ss_pred -EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHH
Confidence 577789999999999999999999986 99999999999999987653 79999999999999886543
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=2.8e-42 Score=370.69 Aligned_cols=277 Identities=39% Similarity=0.701 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHhh---------cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCC--CCEEEEeCCcchHHHHHHHHhh
Q 004103 59 YQLEGLQWMLSLF---------NNNLNGILADEMGLGKTIQTIALIAYLLENKGVT--GPHVIVAPKAVLPNWINEFSTW 127 (773)
Q Consensus 59 yQ~~gv~~l~~~~---------~~~~~gILademGlGKTi~aiali~~l~~~~~~~--gp~LIVvP~sll~qW~~E~~k~ 127 (773)
||++||.||+.++ ....+|||||+||+|||+++++++.++....... +++|||||.+++.+|..|+.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7778899999999999999999999888765443 3699999999999999999999
Q ss_pred c-C-CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHH-----HhHHHHhhcCeeEEEEccccccCChhhHHHHH
Q 004103 128 A-P-SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIM-----RDRQYLKKVQWIYMIVDEGHRLKNHECALAKT 200 (773)
Q Consensus 128 ~-p-~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~-----~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~ 200 (773)
+ | ..+++++.|....+.. .......++++|+||+.+. .....+...+|++|||||+|+++|..+..+++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~ 156 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRL----SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKA 156 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHT----TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHH
T ss_pred cccccccccccccccccccc----cccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccccc
Confidence 9 4 6889999988722221 1122367899999999999 77788888999999999999999999999999
Q ss_pred HHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhh
Q 004103 201 ISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 280 (773)
Q Consensus 201 l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lR 280 (773)
+..+.+.++|+|||||++|++.|+|++++||.|..+.+...|..+|..+ ..........+|..+++++++|
T Consensus 157 l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~---------~~~~~~~~~~~L~~~l~~~~~r 227 (299)
T PF00176_consen 157 LRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP---------DKENSYENIERLRELLSEFMIR 227 (299)
T ss_dssp HHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH---------HHTHHHHHHHHHHHHHCCCEEC
T ss_pred ccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh---------ccccccccccccccccchhhhh
Confidence 9999999999999999999999999999999999999999999988654 1223445678899999999999
Q ss_pred hhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCC----CccchHHHHHHHHHHHhCCCCcc
Q 004103 281 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT----GKSKSLQNLSMQLRKCCNHPYLF 348 (773)
Q Consensus 281 R~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~----~~~~~~~~~~~~Lrk~~~hP~l~ 348 (773)
|.+.++...+|+..+.++.++|++.|+.+|+.+.......+.... +....+...+.+||++|+||+|.
T Consensus 228 ~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 228 RTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp HCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred hhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 999999888999999999999999999999998887776554433 34567888999999999999874
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.2e-36 Score=363.32 Aligned_cols=433 Identities=20% Similarity=0.222 Sum_probs=282.7
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~ 130 (773)
.++|+||.+.+..++. .++|++++||+|||++++.++..++. ...+++|||||+ .++.||..++.+++. .
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 5899999999887773 38999999999999999988887764 345799999999 888999999998863 2
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCChhhHHHHHH---Hccc
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHECALAKTI---SGYQ 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn~~s~~~~~l---~~~~ 205 (773)
..+.++.|...... +...+ ...+|+|+||+.+..+.. .+....|++|||||||++.+..+....+- ...+
T Consensus 87 ~~v~~~~g~~~~~~--r~~~~---~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~ 161 (773)
T PRK13766 87 EKIVVFTGEVSPEK--RAELW---EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAK 161 (773)
T ss_pred ceEEEEeCCCCHHH--HHHHH---hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCC
Confidence 47777877543322 11111 457899999999987642 23344789999999999976443222111 2224
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCCCCChH----hHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhh
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVE----NFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 281 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~----~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR 281 (773)
..++++|||||..+ ...+..+++-|.......+. .+..++..+-...-.+.+.+. ...++..|..++.++
T Consensus 162 ~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~-----~~~i~~~l~~~~~~~ 235 (773)
T PRK13766 162 NPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEE-----LKEIRDLLNEALKDR 235 (773)
T ss_pred CCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHH-----HHHHHHHHHHHHHHH
Confidence 56799999999765 45666666555433222111 222233221111112222222 345667777777766
Q ss_pred hhhHHhhc-CCCceeEEEEecCCHHHHHHHHHHHHhccccccc-----------------CCCccchHHHHHHHHHHHhC
Q 004103 282 KKDEVEKY-LPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-----------------GTGKSKSLQNLSMQLRKCCN 343 (773)
Q Consensus 282 ~k~dv~~~-LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~Lrk~~~ 343 (773)
.+...... .++....+...++...+..++..+.......... .......+..++..++..+.
T Consensus 236 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~ 315 (773)
T PRK13766 236 LKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEAR 315 (773)
T ss_pred HHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcc
Confidence 65543221 1222211222223333334433332211000000 00000111112222221111
Q ss_pred CCCcccccccch----------hhHHHHhhcchHHHHHHHHHHhh--hcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEE
Q 004103 344 HPYLFVGEYNMW----------RKEEIIRASGKFELLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRL 411 (773)
Q Consensus 344 hP~l~~~~~~~~----------~~~~l~~~s~K~~~L~~ll~~l~--~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i 411 (773)
++.......... ....+....+|+..|.++|.... ..+.++||||++..+++.|.++|...|+++..+
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~ 395 (773)
T PRK13766 316 SSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRF 395 (773)
T ss_pred ccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEE
Confidence 110000000000 01111245789999999998876 578899999999999999999999999999999
Q ss_pred cCC--------CCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCe
Q 004103 412 DGS--------TKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 483 (773)
Q Consensus 412 ~G~--------~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~ 483 (773)
+|. ++..+|..++++|+++... +|++|.++++|+|++.+++||+||++|||..++|+.||++|.|+
T Consensus 396 ~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~---vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~--- 469 (773)
T PRK13766 396 VGQASKDGDKGMSQKEQIEILDKFRAGEFN---VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE--- 469 (773)
T ss_pred EccccccccCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---
Confidence 997 8889999999999998765 78999999999999999999999999999999998888888765
Q ss_pred EEEEEEEeCCCHHHHHHHHHHHHHhHH
Q 004103 484 VRVFVLVSVGSIEEVILERAKQKMGID 510 (773)
Q Consensus 484 V~V~rLi~~~tiEe~i~~~~~~K~~l~ 510 (773)
+.||.|++.+|.||.++....+|...+
T Consensus 470 ~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 470 GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 789999999999999988777665554
No 23
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.5e-34 Score=305.40 Aligned_cols=428 Identities=21% Similarity=0.222 Sum_probs=279.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc--CC
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--PS 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~--p~ 130 (773)
.+.|.||..-..-.+ ..|++++.+||||||++|+.++++.+... .|++|+++|+ .|+.|...-+.+.+ |.
T Consensus 14 ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~--~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 14 IEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWF--GGKVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhc--CCeEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 479999999887777 34899999999999999999988766643 3389999998 88999999998886 55
Q ss_pred ceEEEecCC--hhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCChhhHHHHHHHcc--
Q 004103 131 IAAVVYDGR--PDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHECALAKTISGY-- 204 (773)
Q Consensus 131 ~~v~~~~g~--~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~-- 204 (773)
..+..+.|. +.+|...+ .+.+|+++|++.+.+|.. .+..-++.++|+|||||.-+ +.......+.+
T Consensus 87 ~~i~~ltGev~p~~R~~~w-------~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvG-nyAYv~Va~~y~~ 158 (542)
T COG1111 87 DEIAALTGEVRPEEREELW-------AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVG-NYAYVFVAKEYLR 158 (542)
T ss_pred hheeeecCCCChHHHHHHH-------hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccC-cchHHHHHHHHHH
Confidence 778888885 44555544 456899999999999853 35555789999999999865 33333333322
Q ss_pred --ccceEEEecCCCCCCCHHHHHHhhccccCCCC----CChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhh
Q 004103 205 --QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIF----NSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 278 (773)
Q Consensus 205 --~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~----~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~ 278 (773)
+..+.++||||| -++...+...++-|.-.-. ....+...+....-...-++.+. ++-..+...|..+++|.+
T Consensus 159 ~~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp-~e~~~ir~~l~~~l~~~L 236 (542)
T COG1111 159 SAKNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLP-EEIKEIRDLLRDALKPRL 236 (542)
T ss_pred hccCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCc-HHHHHHHHHHHHHHHHHH
Confidence 455789999999 5666667666665533321 11122222222211111223332 233334444555554432
Q ss_pred hhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccC------------------------CCccchHHHH
Q 004103 279 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTG------------------------TGKSKSLQNL 334 (773)
Q Consensus 279 lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~------------------------~~~~~~~~~~ 334 (773)
+.--. .-.....++ -.++.+............... ......+.+.
T Consensus 237 ----k~L~~-----~g~~~~~~~--~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Y 305 (542)
T COG1111 237 ----KPLKE-----LGVIESSSP--VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQY 305 (542)
T ss_pred ----HHHHH-----cCceeccCc--ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 11111 000111111 012222211100000000000 0001112222
Q ss_pred HHHHHHHhCC--C----Ccccccccchhh------HHHHhhcchHHHHHHHHHHhh--hcCCcEEEEeecHHHHHHHHHH
Q 004103 335 SMQLRKCCNH--P----YLFVGEYNMWRK------EEIIRASGKFELLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIY 400 (773)
Q Consensus 335 ~~~Lrk~~~h--P----~l~~~~~~~~~~------~~l~~~s~K~~~L~~ll~~l~--~~g~kvLIFsq~~~~ld~L~~~ 400 (773)
+..|..-|.. - .++...+..... ...--..+|++.+.+++.... ..+.|+|||++++++++.|.++
T Consensus 306 l~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~ 385 (542)
T COG1111 306 LEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNF 385 (542)
T ss_pred HHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHH
Confidence 2222222221 0 000000000000 111124689999999998876 5678999999999999999999
Q ss_pred HHhCCCeEE-EEcC--------CCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHH
Q 004103 401 LKLNDFKFL-RLDG--------STKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQA 471 (773)
Q Consensus 401 L~~~g~~~~-~i~G--------~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa 471 (773)
|...|.... ++-| +|++.+..++|++|++|..+ +|+||..|.+|||++++|.||+||+.-+|...+||
T Consensus 386 L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR 462 (542)
T COG1111 386 LKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQR 462 (542)
T ss_pred HHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccEEEEecCCcHHHHHHHh
Confidence 999988775 5555 59999999999999998876 79999999999999999999999999999999999
Q ss_pred hhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHHHH
Q 004103 472 EDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQ 515 (773)
Q Consensus 472 ~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi~ 515 (773)
.||++| ++.-+||.|+++||-|+.-+..+.+|..-....+.
T Consensus 463 ~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~ 503 (542)
T COG1111 463 KGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIR 503 (542)
T ss_pred hCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHH
Confidence 999988 47789999999999999999999998766555443
No 24
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2e-31 Score=305.82 Aligned_cols=336 Identities=18% Similarity=0.210 Sum_probs=233.5
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc--CC
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--PS 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~--p~ 130 (773)
.+|+|||.+++..++ .+.++|+..+||+|||++++.++.++.... .+++|||||+ .|+.||.++|.+|. +.
T Consensus 113 ~~~r~~Q~~av~~~l----~~~~~il~apTGsGKT~i~~~l~~~~~~~~--~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 113 IEPHWYQYDAVYEGL----KNNRRLLNLPTSAGKSLIQYLLSRYYLENY--EGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred CCCCHHHHHHHHHHH----hcCceEEEeCCCCCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 689999999998777 366789999999999999877766655542 3489999999 99999999999976 33
Q ss_pred ceE-EEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc-ccce
Q 004103 131 IAA-VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQR 208 (773)
Q Consensus 131 ~~v-~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~-~~~~ 208 (773)
..+ .++.|.... ...+|+|+||+.+.+....+ --.+++|||||||++... .+...+..+ ++.+
T Consensus 187 ~~~~~i~~g~~~~------------~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~~~~~--~~~~il~~~~~~~~ 251 (501)
T PHA02558 187 EAMHKIYSGTAKD------------TDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHLFTGK--SLTSIITKLDNCKF 251 (501)
T ss_pred cceeEEecCcccC------------CCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhcccch--hHHHHHHhhhccce
Confidence 333 344554321 34689999999997654322 136899999999999753 345556666 5788
Q ss_pred EEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHHh-
Q 004103 209 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVE- 287 (773)
Q Consensus 209 rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~- 287 (773)
+++|||||.......+ .+..++.|-... -...++.
T Consensus 252 ~lGLTATp~~~~~~~~-~~~~~fG~i~~~-------------------------------------------v~~~~li~ 287 (501)
T PHA02558 252 KFGLTGSLRDGKANIL-QYVGLFGDIFKP-------------------------------------------VTTSQLME 287 (501)
T ss_pred EEEEeccCCCccccHH-HHHHhhCCceEE-------------------------------------------ecHHHHHh
Confidence 9999999964332111 111111110000 0000000
Q ss_pred -hcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcch
Q 004103 288 -KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGK 366 (773)
Q Consensus 288 -~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K 366 (773)
..+.+.....+.+..++.....+. ..... ..+ ..+.....+
T Consensus 288 ~g~l~~~~~~~v~~~~~~~~~~~~~----------------~~~~~---~~~-------------------~~l~~~~~R 329 (501)
T PHA02558 288 EGQVTDLKINSIFLRYPDEDRVKLK----------------GEDYQ---EEI-------------------KYITSHTKR 329 (501)
T ss_pred CCCcCCceEEEEeccCCHHHhhhhc----------------ccchH---HHH-------------------HHHhccHHH
Confidence 012222222333333322110000 00000 000 112233456
Q ss_pred HHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccc
Q 004103 367 FELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL 446 (773)
Q Consensus 367 ~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~ 446 (773)
..++..++..+...++++|||+..++.++.|.+.|...|+++..++|+++.++|..+++.|+.+.. .|++.|++.+++
T Consensus 330 n~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~--~vLvaT~~~l~e 407 (501)
T PHA02558 330 NKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKG--IIIVASYGVFST 407 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCC--eEEEEEcceecc
Confidence 677777777777788999999999999999999999999999999999999999999999987553 344445599999
Q ss_pred cCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCe-EEEEEEEeCCC
Q 004103 447 GLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE-VRVFVLVSVGS 494 (773)
Q Consensus 447 GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~-V~V~rLi~~~t 494 (773)
|+|++.+++||+++|+.+...++|++||++|.+..|+ +.||.++-.-.
T Consensus 408 G~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 408 GISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred ccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 9999999999999999999999999999999988765 99999987543
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=2.1e-31 Score=300.13 Aligned_cols=362 Identities=21% Similarity=0.252 Sum_probs=267.7
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCc
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSI 131 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~ 131 (773)
..+|||||.+++..+.........|++..+||+|||+.++.++..+.. ++|||||. .++.||.+.+.+++...
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 468999999999988876655888999999999999999999887644 49999999 88999998888887543
Q ss_pred -eEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhH--HHHhhcCeeEEEEccccccCChhhHHHHHHHccccce
Q 004103 132 -AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQR 208 (773)
Q Consensus 132 -~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~ 208 (773)
.+..+.|...+. ....|+|+||+++.+.. ..+..-+|++||+||||++...... ..+..+...+
T Consensus 108 ~~~g~~~~~~~~~-----------~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~~~~~ 174 (442)
T COG1061 108 DEIGIYGGGEKEL-----------EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR--RILELLSAAY 174 (442)
T ss_pred cccceecCceecc-----------CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH--HHHHhhhccc
Confidence 455666654321 11469999999999863 3344447999999999999654433 3334444555
Q ss_pred -EEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHH-
Q 004103 209 -RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV- 286 (773)
Q Consensus 209 -rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv- 286 (773)
+|+|||||...+...+..+..++.| ........+.
T Consensus 175 ~~LGLTATp~R~D~~~~~~l~~~~g~-------------------------------------------~vy~~~~~~li 211 (442)
T COG1061 175 PRLGLTATPEREDGGRIGDLFDLIGP-------------------------------------------IVYEVSLKELI 211 (442)
T ss_pred ceeeeccCceeecCCchhHHHHhcCC-------------------------------------------eEeecCHHHHH
Confidence 9999999975543333222222222 2222222222
Q ss_pred h-hcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcc
Q 004103 287 E-KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 365 (773)
Q Consensus 287 ~-~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~ 365 (773)
. ..|.+.....+.+.++......|..........+..... ... .............
T Consensus 212 ~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-----~~~------------------~~~~~~~~~~~~~ 268 (442)
T COG1061 212 DEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-----LRA------------------ENEARRIAIASER 268 (442)
T ss_pred hCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh-----hhH------------------HHHHHHHhhccHH
Confidence 2 357888889999999998888887665433221111000 000 0011122234566
Q ss_pred hHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccc
Q 004103 366 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 445 (773)
Q Consensus 366 K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg 445 (773)
|+..+..++.... .+.+++||+......+.+...|...|+ +..++|.++..+|..+++.|..++.+ +|+++++++
T Consensus 269 ~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~---~lv~~~vl~ 343 (442)
T COG1061 269 KIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIK---VLVTVKVLD 343 (442)
T ss_pred HHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCC---EEEEeeecc
Confidence 7888888888766 788999999999999999999998888 99999999999999999999997755 899999999
Q ss_pred ccCCcccCCeeEEeCCCCChhhHHHHhhhhhhc-CCcCe--EEEEEEEeCCCHHHHHHHHHH
Q 004103 446 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI-GQKKE--VRVFVLVSVGSIEEVILERAK 504 (773)
Q Consensus 446 ~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~Ri-GQ~k~--V~V~rLi~~~tiEe~i~~~~~ 504 (773)
+|+|+|.|+++|+..+.-++..+.|++||+.|. ..++. +..|-+++.++.+..+.....
T Consensus 344 EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 344 EGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred ceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 999999999999999999999999999999994 44444 777888888888777765543
No 26
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-32 Score=319.90 Aligned_cols=261 Identities=25% Similarity=0.371 Sum_probs=197.8
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHH---------------hcCCCCCEEEEeCCcchHHHHHHHHhhcCCc-eEEE
Q 004103 72 NNNLNGILADEMGLGKTIQTIALIAYLLE---------------NKGVTGPHVIVAPKAVLPNWINEFSTWAPSI-AAVV 135 (773)
Q Consensus 72 ~~~~~gILademGlGKTi~aiali~~l~~---------------~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~-~v~~ 135 (773)
..+..+++||+||+|||...+++...-.. .....|.+|||||.+++.||-.|+.++++.. ++..
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 44455699999999999988776543311 1123478999999999999999999999765 9999
Q ss_pred ecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH----------------------HhhcCeeEEEEccccccCCh
Q 004103 136 YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY----------------------LKKVQWIYMIVDEGHRLKNH 193 (773)
Q Consensus 136 ~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~----------------------l~~~~~~~vIiDEaH~lkn~ 193 (773)
|.|-...-..-.. ...++|||+|||+.+..+..+ |..+.|..|++|||+.+...
T Consensus 452 Y~Girk~~~~~~~----el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess 527 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPF----ELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS 527 (1394)
T ss_pred EechhhhcccCch----hhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch
Confidence 9985432111111 126899999999999875322 55678999999999999998
Q ss_pred hhHHHHHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhh
Q 004103 194 ECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 273 (773)
Q Consensus 194 ~s~~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~ 273 (773)
.+..++++..+++.++|+.||||+++ +.+|+.||+||.-.+|.....|.+....++... .....++.+
T Consensus 528 sS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r-----------a~~~~~~dl 595 (1394)
T KOG0298|consen 528 SSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR-----------AKCEPLLDL 595 (1394)
T ss_pred HHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH-----------hhhhhHHHH
Confidence 89999999999999999999999999 999999999999999999999988776655432 123356777
Q ss_pred hhhhhhhhhhhHHhh--cCCCceeEEEEecCCHHHHHHHHHHHH----hcc--------cccccC---CC----ccchHH
Q 004103 274 IRPFILRRKKDEVEK--YLPGKSQVILKCDMSAWQKVYYQQVTD----VGR--------VGLDTG---TG----KSKSLQ 332 (773)
Q Consensus 274 L~p~~lRR~k~dv~~--~LP~k~e~~v~~~~s~~q~~~Y~~i~~----~~~--------~~~~~~---~~----~~~~~~ 332 (773)
+...+-|+.+.+|+. .+||..+.+....+++.+..+|+.... ... ..+... .. ....+.
T Consensus 596 ~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~ 675 (1394)
T KOG0298|consen 596 FKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIIL 675 (1394)
T ss_pred HHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHH
Confidence 888889999988876 478888888888888888777765422 111 011111 11 124577
Q ss_pred HHHHHHHHHhCCCCcc
Q 004103 333 NLSMQLRKCCNHPYLF 348 (773)
Q Consensus 333 ~~~~~Lrk~~~hP~l~ 348 (773)
+.+.+||++|+||...
T Consensus 676 ~~l~rLRq~Cchplv~ 691 (1394)
T KOG0298|consen 676 KWLLRLRQACCHPLVG 691 (1394)
T ss_pred HHHHHHHHhhcccccc
Confidence 7888999999998654
No 27
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1e-28 Score=281.85 Aligned_cols=306 Identities=18% Similarity=0.226 Sum_probs=218.7
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~ 132 (773)
..++|+|.+++..++ ++.+.++..+||+|||+..+..+.. ..+.+|||+|+ +|+.++...+.... +.
T Consensus 10 ~~~r~~Q~~ai~~~l----~g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~~g--i~ 77 (470)
T TIGR00614 10 SSFRPVQLEVINAVL----LGRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKASG--IP 77 (470)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHHcC--Cc
Confidence 479999999999888 4778999999999999876443321 23578999999 88888999988764 44
Q ss_pred EEEecCCh--hHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH---HH-hhcCeeEEEEccccccCChhh-------HHHH
Q 004103 133 AVVYDGRP--DERKAMREEFFSERGRFNVLITHYDLIMRDRQ---YL-KKVQWIYMIVDEGHRLKNHEC-------ALAK 199 (773)
Q Consensus 133 v~~~~g~~--~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~---~l-~~~~~~~vIiDEaH~lkn~~s-------~~~~ 199 (773)
+..+.+.. .++..+..... .+.++++++|++.+..... .+ ...++.+|||||||++...+. .+..
T Consensus 78 ~~~l~~~~~~~~~~~i~~~~~--~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 78 ATFLNSSQSKEQQKNVLTDLK--DGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred EEEEeCCCCHHHHHHHHHHHh--cCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 44444433 23333333332 2678999999999876432 33 344789999999999865432 2222
Q ss_pred HHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhh
Q 004103 200 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 279 (773)
Q Consensus 200 ~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~l 279 (773)
....++....++|||||......++...+++-.|.++... |
T Consensus 156 l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s------~--------------------------------- 196 (470)
T TIGR00614 156 LKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS------F--------------------------------- 196 (470)
T ss_pred HHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC------C---------------------------------
Confidence 3345566778999999976666666555544333221100 0
Q ss_pred hhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHH
Q 004103 280 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEE 359 (773)
Q Consensus 280 RR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~ 359 (773)
..|.....+.. .
T Consensus 197 ---------~r~nl~~~v~~-~---------------------------------------------------------- 208 (470)
T TIGR00614 197 ---------DRPNLYYEVRR-K---------------------------------------------------------- 208 (470)
T ss_pred ---------CCCCcEEEEEe-C----------------------------------------------------------
Confidence 00110000000 0
Q ss_pred HHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEE
Q 004103 360 IIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 439 (773)
Q Consensus 360 l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~Ll 439 (773)
....+..+..++.+ ...+.++||||.....++.+...|...|+.+..+||+++.++|..+++.|.++... +|+
T Consensus 209 ---~~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~---vLV 281 (470)
T TIGR00614 209 ---TPKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ---VVV 281 (470)
T ss_pred ---CccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc---EEE
Confidence 00011122222221 13466789999999999999999999999999999999999999999999988776 799
Q ss_pred ecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEE
Q 004103 440 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 487 (773)
Q Consensus 440 St~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~ 487 (773)
+|.++|+|||++++++||+|++|.++..|.|++||++|.|+...+.+|
T Consensus 282 aT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 282 ATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred EechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999988776554
No 28
>PTZ00110 helicase; Provisional
Probab=99.97 E-value=1.8e-28 Score=283.53 Aligned_cols=321 Identities=21% Similarity=0.261 Sum_probs=219.8
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHH-HHHHHHHHhcC---CCC-CEEEEeCC-cchHHHHHHHHhh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENKG---VTG-PHVIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai-ali~~l~~~~~---~~g-p~LIVvP~-sll~qW~~E~~k~ 127 (773)
.+|.|+|.+++..++ .+.+.|+..+||+|||++.+ .++.++..... ..+ .+|||+|+ .|+.|+..++.++
T Consensus 151 ~~pt~iQ~~aip~~l----~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 151 TEPTPIQVQGWPIAL----SGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 379999999998888 58899999999999999864 34444443211 112 47899999 8889999999998
Q ss_pred cCC--ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChh--hHHHHHH
Q 004103 128 APS--IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTI 201 (773)
Q Consensus 128 ~p~--~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~--s~~~~~l 201 (773)
... +.+.+..|......+..... ...+|+|+|++.+...... +....+.+|||||||++.... ..+.+.+
T Consensus 227 ~~~~~i~~~~~~gg~~~~~q~~~l~----~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il 302 (545)
T PTZ00110 227 GASSKIRNTVAYGGVPKRGQIYALR----RGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIV 302 (545)
T ss_pred hcccCccEEEEeCCCCHHHHHHHHH----cCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHH
Confidence 743 44544444433333222211 4679999999988654321 122357899999999987543 2344455
Q ss_pred Hcc-ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhh
Q 004103 202 SGY-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 280 (773)
Q Consensus 202 ~~~-~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lR 280 (773)
..+ .....+++|||.- .++..+...+ ... .|..+.
T Consensus 303 ~~~~~~~q~l~~SAT~p----~~v~~l~~~l---------------~~~-------------------------~~v~i~ 338 (545)
T PTZ00110 303 SQIRPDRQTLMWSATWP----KEVQSLARDL---------------CKE-------------------------EPVHVN 338 (545)
T ss_pred HhCCCCCeEEEEEeCCC----HHHHHHHHHH---------------hcc-------------------------CCEEEE
Confidence 555 3456789999952 1211111100 000 000000
Q ss_pred hhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHH
Q 004103 281 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEI 360 (773)
Q Consensus 281 R~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l 360 (773)
.-..++ .........+..+
T Consensus 339 vg~~~l-~~~~~i~q~~~~~------------------------------------------------------------ 357 (545)
T PTZ00110 339 VGSLDL-TACHNIKQEVFVV------------------------------------------------------------ 357 (545)
T ss_pred ECCCcc-ccCCCeeEEEEEE------------------------------------------------------------
Confidence 000000 0000000000000
Q ss_pred HhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEe
Q 004103 361 IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 440 (773)
Q Consensus 361 ~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlS 440 (773)
....|...|..++..+...+.++||||+....++.|...|...|++...+||+++.++|..+++.|+++... +||+
T Consensus 358 -~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~---ILVa 433 (545)
T PTZ00110 358 -EEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSP---IMIA 433 (545)
T ss_pred -echhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCc---EEEE
Confidence 112356667777777665788999999999999999999999999999999999999999999999998776 7999
Q ss_pred cccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 441 TRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 441 t~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
|+++++|||++++++||+||+|+++..|+||+||++|.|.+.. +|.|++.+
T Consensus 434 Tdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 434 TDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred cchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 9999999999999999999999999999999999999997654 45566654
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.96 E-value=5.4e-28 Score=275.80 Aligned_cols=316 Identities=18% Similarity=0.244 Sum_probs=222.7
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc---C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---P 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~---p 129 (773)
.+|.|+|.+++..++ ++.+.|+..+||+|||+.++..+...+........+||+||+ .|..||..++.++. +
T Consensus 25 ~~~t~iQ~~ai~~~l----~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 25 TEMTPIQAQSLPAIL----AGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 468999999999888 588899999999999988655555444433333358999999 88899999988764 4
Q ss_pred CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChh--hHHHHHHHccc
Q 004103 130 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQ 205 (773)
Q Consensus 130 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~--s~~~~~l~~~~ 205 (773)
++.+..+.|........... ....+|+|+|++.+...... +....+++|||||||++...+ ..+...+..++
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~l----~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~ 176 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDSL----EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAP 176 (460)
T ss_pred CcEEEEEECCCChHHHHHHh----cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCC
Confidence 67787777765443333221 15789999999999765332 222357899999999986543 33444455553
Q ss_pred -cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhh
Q 004103 206 -IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 284 (773)
Q Consensus 206 -~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~ 284 (773)
....+++|||+-. .+..+ ...+ +.. |..+.-.
T Consensus 177 ~~~q~ll~SAT~~~-~~~~l---~~~~--------------~~~---------------------------~~~i~~~-- 209 (460)
T PRK11776 177 ARRQTLLFSATYPE-GIAAI---SQRF--------------QRD---------------------------PVEVKVE-- 209 (460)
T ss_pred cccEEEEEEecCcH-HHHHH---HHHh--------------cCC---------------------------CEEEEEC--
Confidence 4457999999631 11111 1000 000 0000000
Q ss_pred HHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhc
Q 004103 285 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 364 (773)
Q Consensus 285 dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s 364 (773)
.....+......+.++ ..
T Consensus 210 -~~~~~~~i~~~~~~~~-------------------------------------------------------------~~ 227 (460)
T PRK11776 210 -STHDLPAIEQRFYEVS-------------------------------------------------------------PD 227 (460)
T ss_pred -cCCCCCCeeEEEEEeC-------------------------------------------------------------cH
Confidence 0000111111111111 11
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
.|+..|..++... .+.++||||+....++.+...|...|+.+..+||++++.+|..+++.|+++... +||+|+++
T Consensus 228 ~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~---vLVaTdv~ 302 (460)
T PRK11776 228 ERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS---VLVATDVA 302 (460)
T ss_pred HHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc---EEEEeccc
Confidence 2566666766543 356899999999999999999999999999999999999999999999998876 89999999
Q ss_pred cccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 445 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 445 g~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
++|||++++++||+||.|.++..|+||+||++|.|+.- ..|.|++.+
T Consensus 303 ~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 303 ARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred ccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 99999999999999999999999999999999999764 455566654
No 30
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.96 E-value=2.2e-27 Score=269.02 Aligned_cols=314 Identities=16% Similarity=0.177 Sum_probs=214.6
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHH-HHHhc---CCCCCEEEEeCC-cchHHHHHHHHhhc
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAY-LLENK---GVTGPHVIVAPK-AVLPNWINEFSTWA 128 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~-l~~~~---~~~gp~LIVvP~-sll~qW~~E~~k~~ 128 (773)
.+|+|+|.+++..++ ++.+.|+..+||+|||+.++..+.. +.... .....+||++|+ .|+.|+.+.+..+.
T Consensus 22 ~~p~~iQ~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPAL----DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 468999999999888 5778999999999999987654443 33321 123468999998 78888888877765
Q ss_pred C--CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChh--hHHHHHHH
Q 004103 129 P--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTIS 202 (773)
Q Consensus 129 p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~--s~~~~~l~ 202 (773)
. ++.+..+.|......... ... ..++|+|+|++.+...... +....+++|||||||++.... ..+...+.
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~--~l~--~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~ 173 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAE--VFS--ENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAA 173 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHH--Hhc--CCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHH
Confidence 3 467777777654332211 111 5689999999988754321 223356789999999986533 22333333
Q ss_pred cc-ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhh
Q 004103 203 GY-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 281 (773)
Q Consensus 203 ~~-~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR 281 (773)
.+ .....+++|||+-...+.++.. ++.. .|..+.-
T Consensus 174 ~~~~~~q~~~~SAT~~~~~~~~~~~------------------~~~~--------------------------~~~~i~~ 209 (434)
T PRK11192 174 ETRWRKQTLLFSATLEGDAVQDFAE------------------RLLN--------------------------DPVEVEA 209 (434)
T ss_pred hCccccEEEEEEeecCHHHHHHHHH------------------HHcc--------------------------CCEEEEe
Confidence 33 2345699999974322222211 1100 0000000
Q ss_pred hhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHH
Q 004103 282 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 361 (773)
Q Consensus 282 ~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~ 361 (773)
... ....+......+.++
T Consensus 210 ~~~--~~~~~~i~~~~~~~~------------------------------------------------------------ 227 (434)
T PRK11192 210 EPS--RRERKKIHQWYYRAD------------------------------------------------------------ 227 (434)
T ss_pred cCC--cccccCceEEEEEeC------------------------------------------------------------
Confidence 000 000000000000000
Q ss_pred hhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEec
Q 004103 362 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 441 (773)
Q Consensus 362 ~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt 441 (773)
....|..+|..++.. ....++||||+....++.+...|...|+.+..++|+++..+|..+++.|++|... +|++|
T Consensus 228 ~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~---vLVaT 302 (434)
T PRK11192 228 DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVN---VLVAT 302 (434)
T ss_pred CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCc---EEEEc
Confidence 012355566666643 2457999999999999999999999999999999999999999999999998876 89999
Q ss_pred ccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEE
Q 004103 442 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRV 486 (773)
Q Consensus 442 ~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V 486 (773)
+++++|||++.+++||+||+|+++..|+||+||++|.|....+.+
T Consensus 303 d~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 303 DVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred cccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 999999999999999999999999999999999999998765444
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.96 E-value=1.5e-27 Score=271.45 Aligned_cols=312 Identities=18% Similarity=0.222 Sum_probs=211.9
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC------CCCCEEEEeCC-cchHHHHHHHHh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG------VTGPHVIVAPK-AVLPNWINEFST 126 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~------~~gp~LIVvP~-sll~qW~~E~~k 126 (773)
..|.|+|.+++..++ ++.+.|+..+||+|||+..+..+...+.... ....+|||||+ .|+.||.+++..
T Consensus 22 ~~pt~iQ~~ai~~il----~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 22 REPTPIQQQAIPAVL----EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 378999999999887 5788999999999999997655544433211 11258999999 888999999988
Q ss_pred hcC--CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCChh--hHHHHH
Q 004103 127 WAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHE--CALAKT 200 (773)
Q Consensus 127 ~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn~~--s~~~~~ 200 (773)
+.. .+.+..+.|........... ...++|+|+|++.+..... .+.....++|||||||++.... ..+...
T Consensus 98 ~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~i 173 (456)
T PRK10590 98 YSKYLNIRSLVVFGGVSINPQMMKL----RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRV 173 (456)
T ss_pred HhccCCCEEEEEECCcCHHHHHHHH----cCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHH
Confidence 763 35555555544332222211 1578999999999866432 1223467899999999986533 233444
Q ss_pred HHcccc-ceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhh
Q 004103 201 ISGYQI-QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 279 (773)
Q Consensus 201 l~~~~~-~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~l 279 (773)
+..+.. ...+++|||+-. ...++... + +..+ ..+
T Consensus 174 l~~l~~~~q~l~~SAT~~~-~~~~l~~~---~--------------~~~~---------------------------~~i 208 (456)
T PRK10590 174 LAKLPAKRQNLLFSATFSD-DIKALAEK---L--------------LHNP---------------------------LEI 208 (456)
T ss_pred HHhCCccCeEEEEeCCCcH-HHHHHHHH---H--------------cCCC---------------------------eEE
Confidence 455543 457999999632 11111110 0 0000 000
Q ss_pred hhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHH
Q 004103 280 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEE 359 (773)
Q Consensus 280 RR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~ 359 (773)
.-.... ...+........++
T Consensus 209 ~~~~~~--~~~~~i~~~~~~~~---------------------------------------------------------- 228 (456)
T PRK10590 209 EVARRN--TASEQVTQHVHFVD---------------------------------------------------------- 228 (456)
T ss_pred EEeccc--ccccceeEEEEEcC----------------------------------------------------------
Confidence 000000 00000001111100
Q ss_pred HHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEE
Q 004103 360 IIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 439 (773)
Q Consensus 360 l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~Ll 439 (773)
...|..+|..++.. ....++||||+....++.|...|...|+....+||+++.++|..+++.|+++... +||
T Consensus 229 ---~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---iLV 300 (456)
T PRK10590 229 ---KKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR---VLV 300 (456)
T ss_pred ---HHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCc---EEE
Confidence 01123334444432 2356899999999999999999999999999999999999999999999998776 899
Q ss_pred ecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEE
Q 004103 440 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRV 486 (773)
Q Consensus 440 St~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V 486 (773)
+|+++++|||++++++||+||+|.++..|+|++||++|.|....+.+
T Consensus 301 aTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred EccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 99999999999999999999999999999999999999998765433
No 32
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.96 E-value=2.6e-27 Score=272.87 Aligned_cols=316 Identities=15% Similarity=0.196 Sum_probs=215.0
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHH-HHHHHHhc------CCCCCEEEEeCC-cchHHHHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLENK------GVTGPHVIVAPK-AVLPNWINEFS 125 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aial-i~~l~~~~------~~~gp~LIVvP~-sll~qW~~E~~ 125 (773)
..|+|+|.+++..++ .+.+.|+..+||+|||+.++.. +.++.... .....+|||+|+ .|+.|+..++.
T Consensus 142 ~~ptpiQ~~aip~il----~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAAL----SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 379999999999888 5889999999999999987544 44443211 123468999999 78888888887
Q ss_pred hhcCC--ceEEE-ecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCCh--hhHHH
Q 004103 126 TWAPS--IAAVV-YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNH--ECALA 198 (773)
Q Consensus 126 k~~p~--~~v~~-~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn~--~s~~~ 198 (773)
.+... +.+.. +.|.... ..... + ...++|+|+|++.+..... .+......+|||||||++... ...+.
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~-~q~~~-l---~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~ 292 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMP-QQLYR-I---QQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVM 292 (518)
T ss_pred HHhCCCCceEEEEECCcchH-HHHHH-h---cCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHH
Confidence 77643 34444 4444322 22221 1 1468999999998865422 122335789999999998653 33455
Q ss_pred HHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhh
Q 004103 199 KTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 278 (773)
Q Consensus 199 ~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~ 278 (773)
..+..+.....+++|||.-. ....+ ...+... +..
T Consensus 293 ~i~~~l~~~q~l~~SATl~~-~v~~l---~~~~~~~-----------------------------------------~~~ 327 (518)
T PLN00206 293 QIFQALSQPQVLLFSATVSP-EVEKF---ASSLAKD-----------------------------------------IIL 327 (518)
T ss_pred HHHHhCCCCcEEEEEeeCCH-HHHHH---HHHhCCC-----------------------------------------CEE
Confidence 55666677788999999532 11111 1110000 000
Q ss_pred hhhhhhHHhhcCCCc--eeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchh
Q 004103 279 LRRKKDEVEKYLPGK--SQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 356 (773)
Q Consensus 279 lRR~k~dv~~~LP~k--~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~ 356 (773)
+... . ...|.. ....+.++
T Consensus 328 i~~~-~---~~~~~~~v~q~~~~~~------------------------------------------------------- 348 (518)
T PLN00206 328 ISIG-N---PNRPNKAVKQLAIWVE------------------------------------------------------- 348 (518)
T ss_pred EEeC-C---CCCCCcceeEEEEecc-------------------------------------------------------
Confidence 0000 0 000100 11111111
Q ss_pred hHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHh-CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcE
Q 004103 357 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL-NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 435 (773)
Q Consensus 357 ~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~-~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~ 435 (773)
...|...|..++........++|||++....++.|...|.. .|+++..+||+++.++|..+++.|.+|..+
T Consensus 349 ------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~-- 420 (518)
T PLN00206 349 ------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP-- 420 (518)
T ss_pred ------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC--
Confidence 11133344455544433456899999999999999999975 699999999999999999999999998876
Q ss_pred EEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 436 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 436 v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
+|++|+++++|||++.+++||+||+|.++..|+|++||++|.|... .++.|++.+
T Consensus 421 -ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 421 -VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred -EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 7999999999999999999999999999999999999999999654 445566543
No 33
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=1.5e-27 Score=269.27 Aligned_cols=316 Identities=17% Similarity=0.174 Sum_probs=215.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHH-HHHHhcC------CCCCEEEEeCC-cchHHHHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA-YLLENKG------VTGPHVIVAPK-AVLPNWINEFS 125 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~-~l~~~~~------~~gp~LIVvP~-sll~qW~~E~~ 125 (773)
..|.|.|.+++..++ ++.+.|+..+||+|||+..+..+. .+..... ....+|||+|+ .|+.|+..++.
T Consensus 29 ~~pt~iQ~~aip~il----~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~ 104 (423)
T PRK04837 29 HNCTPIQALALPLTL----AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAE 104 (423)
T ss_pred CCCCHHHHHHHHHHh----CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHH
Confidence 378899999999888 588899999999999998755444 3433211 12358999999 88899988887
Q ss_pred hhcC--CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCChh--hHHHH
Q 004103 126 TWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHE--CALAK 199 (773)
Q Consensus 126 k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn~~--s~~~~ 199 (773)
.+.. ++.+..+.|.......... + . ..++|+|+|++.+..... .+....+.+|||||||++.... ..+..
T Consensus 105 ~l~~~~~~~v~~~~gg~~~~~~~~~-l-~--~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~ 180 (423)
T PRK04837 105 PLAQATGLKLGLAYGGDGYDKQLKV-L-E--SGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRW 180 (423)
T ss_pred HHhccCCceEEEEECCCCHHHHHHH-h-c--CCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHH
Confidence 7653 4666666665433222211 1 1 467999999999976432 2233467899999999986533 23333
Q ss_pred HHHccc---cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhh
Q 004103 200 TISGYQ---IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 276 (773)
Q Consensus 200 ~l~~~~---~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p 276 (773)
.+..+. ....+++|||.-. ...++.. .++. .|
T Consensus 181 i~~~~~~~~~~~~~l~SAT~~~-~~~~~~~-----------------~~~~---------------------------~p 215 (423)
T PRK04837 181 LFRRMPPANQRLNMLFSATLSY-RVRELAF-----------------EHMN---------------------------NP 215 (423)
T ss_pred HHHhCCCccceeEEEEeccCCH-HHHHHHH-----------------HHCC---------------------------CC
Confidence 444443 2335889999631 1111100 0000 00
Q ss_pred hhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchh
Q 004103 277 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 356 (773)
Q Consensus 277 ~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~ 356 (773)
..+. .... ..........+.+.
T Consensus 216 ~~i~-v~~~--~~~~~~i~~~~~~~------------------------------------------------------- 237 (423)
T PRK04837 216 EYVE-VEPE--QKTGHRIKEELFYP------------------------------------------------------- 237 (423)
T ss_pred EEEE-EcCC--CcCCCceeEEEEeC-------------------------------------------------------
Confidence 0000 0000 00000000000000
Q ss_pred hHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEE
Q 004103 357 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 436 (773)
Q Consensus 357 ~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v 436 (773)
....|+..|..++... ...++||||+....++.+...|...|+++..+||+++.++|..+++.|+++...
T Consensus 238 -----~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~--- 307 (423)
T PRK04837 238 -----SNEEKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD--- 307 (423)
T ss_pred -----CHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc---
Confidence 0123555666666542 357999999999999999999999999999999999999999999999998876
Q ss_pred EEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeC
Q 004103 437 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 492 (773)
Q Consensus 437 ~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~ 492 (773)
+|++|+++++|||++++++||+||+|+++..|+|++||++|.|+.-. ++.|+++
T Consensus 308 vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 308 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCH
Confidence 89999999999999999999999999999999999999999997644 4455554
No 34
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=1.5e-26 Score=262.75 Aligned_cols=418 Identities=20% Similarity=0.222 Sum_probs=248.2
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCc
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSI 131 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~ 131 (773)
...||+||.+-++-++ +.|.|+|.+||+|||.+|+.++..+++.. ..+++++++|+ .++.|....|..++-..
T Consensus 60 ~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~-p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~ 133 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWR-PKGKVVFLAPTRPLVNQQIACFSIYLIPY 133 (746)
T ss_pred cccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcC-CcceEEEeeCCchHHHHHHHHHhhccCcc
Confidence 4689999999998777 88999999999999999988887777754 44899999999 78888888888877445
Q ss_pred eEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhh---cCeeEEEEccccccCChhhHHHHHHHcc----
Q 004103 132 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKK---VQWIYMIVDEGHRLKNHECALAKTISGY---- 204 (773)
Q Consensus 132 ~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~---~~~~~vIiDEaH~lkn~~s~~~~~l~~~---- 204 (773)
.+....|+...+......+ ...+|++.|++.+.++...-.. -.|.++|||||||... ++.....++.+
T Consensus 134 ~~T~~l~~~~~~~~r~~i~----~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~k-n~~Y~~Vmr~~l~~k 208 (746)
T KOG0354|consen 134 SVTGQLGDTVPRSNRGEIV----ASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSK-NHPYNNIMREYLDLK 208 (746)
T ss_pred cceeeccCccCCCchhhhh----cccceEEeChHhhhhhcccccccccceEEEEEEcccccccc-cccHHHHHHHHHHhh
Confidence 5555555533332222222 4568999999999987544332 3489999999999744 33333333222
Q ss_pred -ccceEEEecCCCCCCCHHHHHHhhccccCCCCCCh--HhHHHHhcccccc-cCCccCChHHHHHHHHHHHhhhhhhhhh
Q 004103 205 -QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSV--ENFEEWFNAPFKD-RGQVALTDEEQLLIIRRLHHVIRPFILR 280 (773)
Q Consensus 205 -~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~--~~f~~~f~~~~~~-~~~~~~~~~~~~~~~~~L~~~L~p~~lR 280 (773)
...+.|+|||||= ++..++.+.+.-|... +.-. ......+..--.. .-.+. -..........|..+++|++.+
T Consensus 209 ~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~-~~~~~~~~~~~f~~~i~p~l~~ 285 (746)
T KOG0354|consen 209 NQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVD-LSLCERDIEDPFGMIIEPLLQQ 285 (746)
T ss_pred hccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCc-HHHhhhhhhhhHHHHHHHHHHH
Confidence 3447899999997 7777776665554433 1110 0001111000000 00011 1111222344566677776654
Q ss_pred hhhhHHhh------------------cCCCceeEEEEecCCHHHHHHHHHHH-H-hccc---cc---ccCCCccchHHHH
Q 004103 281 RKKDEVEK------------------YLPGKSQVILKCDMSAWQKVYYQQVT-D-VGRV---GL---DTGTGKSKSLQNL 334 (773)
Q Consensus 281 R~k~dv~~------------------~LP~k~e~~v~~~~s~~q~~~Y~~i~-~-~~~~---~~---~~~~~~~~~~~~~ 334 (773)
-....+.. ..|......-.| +...+...|.... . .+.. .+ ....... .+..
T Consensus 286 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~-~~~k- 362 (746)
T KOG0354|consen 286 LQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNC-FYALHLRKYNLALLISDGIRFVDALDYLEDFYEEV-ALKK- 362 (746)
T ss_pred HHhcCccccccccccccchhhhhhhhhccCCCccchhh-HHHHHHHHHHHHHHhhcchhhHHHHhhhhhhcccc-chhH-
Confidence 33222110 000000000000 1111111110000 0 0000 00 0000000 0000
Q ss_pred HHHHHHHh---CCCCcccccccchhhHHH----HhhcchHHHHHHHHHHhhh--cCCcEEEEeecHHHHHHHHHHHH-h-
Q 004103 335 SMQLRKCC---NHPYLFVGEYNMWRKEEI----IRASGKFELLDRLLPKLRK--SGHRVLLFSQMTRLMDILEIYLK-L- 403 (773)
Q Consensus 335 ~~~Lrk~~---~hP~l~~~~~~~~~~~~l----~~~s~K~~~L~~ll~~l~~--~g~kvLIFsq~~~~ld~L~~~L~-~- 403 (773)
.+.... .|+++... .. ..+.+ -...+|++.|.++|..... +..|+|||+.++..++.|..+|. .
T Consensus 363 --~~~~~~e~~~~~~~~~~-m~--~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~ 437 (746)
T KOG0354|consen 363 --YLKLELEARLIRNFTEN-MN--ELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH 437 (746)
T ss_pred --HHHHHhcchhhHHHHHH-HH--hhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh
Confidence 000000 00000000 00 00000 0236799999999977653 56799999999999999999987 2
Q ss_pred -CCCeEEEEcC--------CCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhh
Q 004103 404 -NDFKFLRLDG--------STKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDR 474 (773)
Q Consensus 404 -~g~~~~~i~G--------~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gR 474 (773)
.|++...+-| ++++.+..++|++|++|... +||+|.+|.+|||+..||.||.||..-||...+||+||
T Consensus 438 ~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR 514 (746)
T KOG0354|consen 438 ELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR 514 (746)
T ss_pred hcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc
Confidence 2555555555 68889999999999999987 89999999999999999999999999999999999999
Q ss_pred hhhcCCcCeEEEEEEEeCCCHHHHHHH
Q 004103 475 AHRIGQKKEVRVFVLVSVGSIEEVILE 501 (773)
Q Consensus 475 a~RiGQ~k~V~V~rLi~~~tiEe~i~~ 501 (773)
+| ++.-+++.|.+ +.+..-++
T Consensus 515 -gR---a~ns~~vll~t--~~~~~~~E 535 (746)
T KOG0354|consen 515 -GR---ARNSKCVLLTT--GSEVIEFE 535 (746)
T ss_pred -cc---ccCCeEEEEEc--chhHHHHH
Confidence 66 45555555655 34444443
No 35
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=4e-27 Score=273.30 Aligned_cols=316 Identities=17% Similarity=0.217 Sum_probs=216.5
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHH-HHHhc------CCCCCEEEEeCC-cchHHHHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAY-LLENK------GVTGPHVIVAPK-AVLPNWINEFS 125 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~-l~~~~------~~~gp~LIVvP~-sll~qW~~E~~ 125 (773)
..+.|.|..++..++ ++.+.|+..+||+|||+.++..+.. +.... .....+|||+|+ .|+.|+..++.
T Consensus 30 ~~ptpiQ~~~ip~~l----~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~ 105 (572)
T PRK04537 30 TRCTPIQALTLPVAL----PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAV 105 (572)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 478999999999888 5888999999999999997655544 33221 112468999999 88899999998
Q ss_pred hhcC--CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH---HhhcCeeEEEEccccccCChh--hHHH
Q 004103 126 TWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKNHE--CALA 198 (773)
Q Consensus 126 k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~---l~~~~~~~vIiDEaH~lkn~~--s~~~ 198 (773)
++.. ++.+..+.|......... ... ..++|+|+|++.+...... +......+|||||||++.... ..+.
T Consensus 106 ~l~~~~~i~v~~l~Gg~~~~~q~~--~l~--~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~ 181 (572)
T PRK04537 106 KFGADLGLRFALVYGGVDYDKQRE--LLQ--QGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIR 181 (572)
T ss_pred HHhccCCceEEEEECCCCHHHHHH--HHh--CCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHH
Confidence 8874 355666666544322211 111 4689999999998765332 333456789999999985432 2333
Q ss_pred HHHHccc---cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhh
Q 004103 199 KTISGYQ---IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIR 275 (773)
Q Consensus 199 ~~l~~~~---~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~ 275 (773)
..+..+. ....+++|||.-. .+.++ .. .++..+
T Consensus 182 ~il~~lp~~~~~q~ll~SATl~~-~v~~l---~~--------------~~l~~p-------------------------- 217 (572)
T PRK04537 182 FLLRRMPERGTRQTLLFSATLSH-RVLEL---AY--------------EHMNEP-------------------------- 217 (572)
T ss_pred HHHHhcccccCceEEEEeCCccH-HHHHH---HH--------------HHhcCC--------------------------
Confidence 3444443 3467899999521 11111 00 000000
Q ss_pred hhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccch
Q 004103 276 PFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMW 355 (773)
Q Consensus 276 p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~ 355 (773)
..+..... ...+......+.+.
T Consensus 218 -~~i~v~~~---~~~~~~i~q~~~~~------------------------------------------------------ 239 (572)
T PRK04537 218 -EKLVVETE---TITAARVRQRIYFP------------------------------------------------------ 239 (572)
T ss_pred -cEEEeccc---cccccceeEEEEec------------------------------------------------------
Confidence 00000000 00000000001000
Q ss_pred hhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcE
Q 004103 356 RKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 435 (773)
Q Consensus 356 ~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~ 435 (773)
....|+..|..++.. ..+.++||||+....++.|.+.|...|+.+..+||+++..+|..+++.|+++...
T Consensus 240 ------~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~-- 309 (572)
T PRK04537 240 ------ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE-- 309 (572)
T ss_pred ------CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe--
Confidence 012244555555543 3467999999999999999999999999999999999999999999999998776
Q ss_pred EEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeC
Q 004103 436 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 492 (773)
Q Consensus 436 v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~ 492 (773)
+||+|+++++|||++.+++||+||.|+++..|+|++||++|.|....+ +.|++.
T Consensus 310 -VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a--i~~~~~ 363 (572)
T PRK04537 310 -ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDA--ISFACE 363 (572)
T ss_pred -EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceE--EEEecH
Confidence 899999999999999999999999999999999999999999986544 344543
No 36
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=6.1e-28 Score=250.91 Aligned_cols=324 Identities=21% Similarity=0.290 Sum_probs=241.2
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHH-HHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC-
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQ-TIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP- 129 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~-aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p- 129 (773)
...|.+.|.+++..++ ++..+|.+.+||+|||.. +|-++..|+.... .-.+||++|+ .+..|..+.|+.+..
T Consensus 81 ~~~PT~IQ~~aiP~~L----~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-~~~~lVLtPtRELA~QI~e~fe~Lg~~ 155 (476)
T KOG0330|consen 81 WKKPTKIQSEAIPVAL----GGRDVIGLAETGSGKTGAFALPILQRLLQEPK-LFFALVLTPTRELAQQIAEQFEALGSG 155 (476)
T ss_pred cCCCchhhhhhcchhh----CCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-CceEEEecCcHHHHHHHHHHHHHhccc
Confidence 4578899999999888 688999999999999999 5677777877543 3467999999 777778888888864
Q ss_pred -CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH---HhhcCeeEEEEccccccCChh--hHHHHHHHc
Q 004103 130 -SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKNHE--CALAKTISG 203 (773)
Q Consensus 130 -~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~---l~~~~~~~vIiDEaH~lkn~~--s~~~~~l~~ 203 (773)
++.+.++.|..+...+..+.. .+++|+|.|+..+.++... +..-...++|+|||+++.|.. ..+.+++..
T Consensus 156 iglr~~~lvGG~~m~~q~~~L~----kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ 231 (476)
T KOG0330|consen 156 IGLRVAVLVGGMDMMLQANQLS----KKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKV 231 (476)
T ss_pred cCeEEEEEecCchHHHHHHHhh----cCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHh
Confidence 577888888877666554443 6789999999999887653 222346789999999998754 467888888
Q ss_pred cccceE-EEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhh
Q 004103 204 YQIQRR-LLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 282 (773)
Q Consensus 204 ~~~~~r-llLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~ 282 (773)
++..++ +|.|||- ..+...|. + ..
T Consensus 232 ip~erqt~LfsATM-t~kv~kL~-------------------------------------------------r-as---- 256 (476)
T KOG0330|consen 232 IPRERQTFLFSATM-TKKVRKLQ-------------------------------------------------R-AS---- 256 (476)
T ss_pred cCccceEEEEEeec-chhhHHHH-------------------------------------------------h-hc----
Confidence 875555 7788883 22222221 0 00
Q ss_pred hhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHh
Q 004103 283 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIR 362 (773)
Q Consensus 283 k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~ 362 (773)
+-......+. ..|+.+ ..|.+ -|++. .
T Consensus 257 -------l~~p~~v~~s--------~ky~tv----------------------~~lkQ----~ylfv------------~ 283 (476)
T KOG0330|consen 257 -------LDNPVKVAVS--------SKYQTV----------------------DHLKQ----TYLFV------------P 283 (476)
T ss_pred -------cCCCeEEecc--------chhcch----------------------HHhhh----heEec------------c
Confidence 0000000000 001110 00110 01111 1
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
..-|-..|..+|... .|..+||||....+.+.+.-+|...|+....+||.|++..|..+++.|+++..+ +|++|+
T Consensus 284 ~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~---iLv~TD 358 (476)
T KOG0330|consen 284 GKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS---ILVCTD 358 (476)
T ss_pred ccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc---EEEecc
Confidence 233566778888765 467999999999999999999999999999999999999999999999998776 899999
Q ss_pred cccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHH
Q 004103 443 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILER 502 (773)
Q Consensus 443 agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~ 502 (773)
++++|||++.+|+||+||.|-+...|++|.||+.|.| ..-.++.|++. .|-..+++
T Consensus 359 VaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qr 414 (476)
T KOG0330|consen 359 VASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQR 414 (476)
T ss_pred hhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHH
Confidence 9999999999999999999999999999999999999 66777888887 44444444
No 37
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.2e-27 Score=262.31 Aligned_cols=313 Identities=21% Similarity=0.292 Sum_probs=228.7
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHH-HHHHHHHHHh----cCCCCC-EEEEeCC-cchHHHHHHHHh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT-IALIAYLLEN----KGVTGP-HVIVAPK-AVLPNWINEFST 126 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~a-iali~~l~~~----~~~~gp-~LIVvP~-sll~qW~~E~~k 126 (773)
..|.|.|..+...++ .+.++|..+.||+|||+.. |.+|.++... ....+| +||++|+ .|..|...++..
T Consensus 112 ~~PtpIQaq~wp~~l----~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~ 187 (519)
T KOG0331|consen 112 EKPTPIQAQGWPIAL----SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEARE 187 (519)
T ss_pred CCCchhhhcccceec----cCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHH
Confidence 478999999988777 5888999999999999995 4556666541 112234 8999999 888889999999
Q ss_pred hcCCce--EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCC--hhhHHHHH
Q 004103 127 WAPSIA--AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKN--HECALAKT 200 (773)
Q Consensus 127 ~~p~~~--v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn--~~s~~~~~ 200 (773)
+..... ..++.|......++.+.. ...+|+|+|+..+..... .+...+..|+|+|||++|.. ....+.++
T Consensus 188 ~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~I 263 (519)
T KOG0331|consen 188 FGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKI 263 (519)
T ss_pred HcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHH
Confidence 885543 555555444444444332 578999999999977543 24444788999999999954 56678888
Q ss_pred HHcc-ccce-EEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhh
Q 004103 201 ISGY-QIQR-RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 278 (773)
Q Consensus 201 l~~~-~~~~-rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~ 278 (773)
+..+ .+.+ .++-|||-- .+
T Consensus 264 l~~i~~~~rQtlm~saTwp----~~------------------------------------------------------- 284 (519)
T KOG0331|consen 264 LSQIPRPDRQTLMFSATWP----KE------------------------------------------------------- 284 (519)
T ss_pred HHhcCCCcccEEEEeeecc----HH-------------------------------------------------------
Confidence 8887 4443 678888821 00
Q ss_pred hhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhH
Q 004103 279 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKE 358 (773)
Q Consensus 279 lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~ 358 (773)
+|.+..++.. .| ....+.... .......+.++...|
T Consensus 285 v~~lA~~fl~-~~-~~i~ig~~~--------------------------~~~a~~~i~qive~~---------------- 320 (519)
T KOG0331|consen 285 VRQLAEDFLN-NP-IQINVGNKK--------------------------ELKANHNIRQIVEVC---------------- 320 (519)
T ss_pred HHHHHHHHhc-Cc-eEEEecchh--------------------------hhhhhcchhhhhhhc----------------
Confidence 1111111111 11 111111000 000011111222222
Q ss_pred HHHhhcchHHHHHHHHHHhh-hcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEE
Q 004103 359 EIIRASGKFELLDRLLPKLR-KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMF 437 (773)
Q Consensus 359 ~l~~~s~K~~~L~~ll~~l~-~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~ 437 (773)
....|...|..+|..+. ..+.|+||||+....++.|+..|...+++...|||..++.+|..+++.|.+|+.+ +
T Consensus 321 ---~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~---v 394 (519)
T KOG0331|consen 321 ---DETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSP---V 394 (519)
T ss_pred ---CHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcc---e
Confidence 34568888888888876 4456999999999999999999999999999999999999999999999999988 8
Q ss_pred EEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCe
Q 004103 438 LLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 483 (773)
Q Consensus 438 LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~ 483 (773)
|++|+++++|||++++++||+||+|-|...|+||+||.+|.|++-.
T Consensus 395 LVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~ 440 (519)
T KOG0331|consen 395 LVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGT 440 (519)
T ss_pred EEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCce
Confidence 9999999999999999999999999999999999999999887654
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.96 E-value=7.7e-27 Score=273.47 Aligned_cols=302 Identities=19% Similarity=0.226 Sum_probs=214.9
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~ 132 (773)
..++|+|.+++..++ ++.++++..+||+|||++.+..+. .. .+.+|||+|. +++.++...+.... +.
T Consensus 24 ~~~r~~Q~~ai~~il----~g~dvlv~apTGsGKTl~y~lpal--~~----~g~tlVisPl~sL~~dqv~~l~~~g--i~ 91 (607)
T PRK11057 24 QQFRPGQQEIIDAVL----SGRDCLVVMPTGGGKSLCYQIPAL--VL----DGLTLVVSPLISLMKDQVDQLLANG--VA 91 (607)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHH--Hc----CCCEEEEecHHHHHHHHHHHHHHcC--Cc
Confidence 379999999999887 588899999999999987643332 21 3578999999 88888988888763 44
Q ss_pred EEEecCChh--HHHHHHHHHHhhcCCccEEEcCHHHHHHh--HHHHhhcCeeEEEEccccccCChhh-------HHHHHH
Q 004103 133 AVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKNHEC-------ALAKTI 201 (773)
Q Consensus 133 v~~~~g~~~--~r~~~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaH~lkn~~s-------~~~~~l 201 (773)
+..+.+... .......... .+.++++++|++.+... ...+...++.+|||||||++...+. .+....
T Consensus 92 ~~~~~s~~~~~~~~~~~~~~~--~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~ 169 (607)
T PRK11057 92 AACLNSTQTREQQLEVMAGCR--TGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLR 169 (607)
T ss_pred EEEEcCCCCHHHHHHHHHHHh--CCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHH
Confidence 444444332 2222222222 26788999999998743 3345556789999999999865332 223333
Q ss_pred HccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhh
Q 004103 202 SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 281 (773)
Q Consensus 202 ~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR 281 (773)
..++....++||||+-.....++...+.+-.|.++... |.
T Consensus 170 ~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~------~~---------------------------------- 209 (607)
T PRK11057 170 QRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS------FD---------------------------------- 209 (607)
T ss_pred HhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC------CC----------------------------------
Confidence 45566778999999876655565555443322211000 00
Q ss_pred hhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHH
Q 004103 282 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 361 (773)
Q Consensus 282 ~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~ 361 (773)
.|.....++.
T Consensus 210 --------r~nl~~~v~~-------------------------------------------------------------- 219 (607)
T PRK11057 210 --------RPNIRYTLVE-------------------------------------------------------------- 219 (607)
T ss_pred --------CCcceeeeee--------------------------------------------------------------
Confidence 0100000000
Q ss_pred hhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEec
Q 004103 362 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 441 (773)
Q Consensus 362 ~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt 441 (773)
...++..+..++.. ..+.++||||+....++.+...|...|+.+..+||+++.++|..+++.|..+... +|++|
T Consensus 220 -~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~---VLVaT 293 (607)
T PRK11057 220 -KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ---IVVAT 293 (607)
T ss_pred -ccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC---EEEEe
Confidence 00011222223322 3567999999999999999999999999999999999999999999999988776 79999
Q ss_pred ccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEE
Q 004103 442 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVR 485 (773)
Q Consensus 442 ~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~ 485 (773)
.++|+|||++++++||+||.|.++..|.|++||++|.|....+.
T Consensus 294 ~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 294 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred chhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEE
Confidence 99999999999999999999999999999999999999776543
No 39
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=8.2e-27 Score=266.97 Aligned_cols=318 Identities=19% Similarity=0.235 Sum_probs=216.2
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHH-HHHHHhcCC------CCCEEEEeCC-cchHHHHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI-AYLLENKGV------TGPHVIVAPK-AVLPNWINEFS 125 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali-~~l~~~~~~------~gp~LIVvP~-sll~qW~~E~~ 125 (773)
..|+|+|.+++..++ ++.+.|++.+||+|||+..+..+ ..+...... ...+|||+|+ .|..|+.+++.
T Consensus 108 ~~~~~iQ~~ai~~~~----~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYTL----AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 479999999998877 68899999999999998865444 444433211 2468999999 88889998888
Q ss_pred hhcC--CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChhh--HHHH
Q 004103 126 TWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHEC--ALAK 199 (773)
Q Consensus 126 k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~s--~~~~ 199 (773)
.+.. ++.+..+.|..+........ . ...++|+|+|++.+...... +..-..++|||||+|++.+.+. .+..
T Consensus 184 ~l~~~~~~~v~~~~gg~~~~~~~~~~-~--~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~ 260 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDFDKQLKQL-E--ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQ 260 (475)
T ss_pred HhhccCCCEEEEEEccCChHHHHHHH-h--CCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHH
Confidence 7753 46677777754433222211 1 14679999999999654321 1123567999999999965432 2444
Q ss_pred HHHccc---cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhh
Q 004103 200 TISGYQ---IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 276 (773)
Q Consensus 200 ~l~~~~---~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p 276 (773)
.+..+. ....+++|||... ++.++... |... |
T Consensus 261 i~~~~~~~~~~q~i~~SAT~~~-~~~~~~~~-----------------~~~~---------------------------~ 295 (475)
T PRK01297 261 IIRQTPRKEERQTLLFSATFTD-DVMNLAKQ-----------------WTTD---------------------------P 295 (475)
T ss_pred HHHhCCCCCCceEEEEEeecCH-HHHHHHHH-----------------hccC---------------------------C
Confidence 444442 3467999999532 22221110 0000 0
Q ss_pred hhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchh
Q 004103 277 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 356 (773)
Q Consensus 277 ~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~ 356 (773)
..+.-....+. .+........+
T Consensus 296 ~~v~~~~~~~~--~~~~~~~~~~~-------------------------------------------------------- 317 (475)
T PRK01297 296 AIVEIEPENVA--SDTVEQHVYAV-------------------------------------------------------- 317 (475)
T ss_pred EEEEeccCcCC--CCcccEEEEEe--------------------------------------------------------
Confidence 00000000000 00000000000
Q ss_pred hHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEE
Q 004103 357 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 436 (773)
Q Consensus 357 ~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v 436 (773)
..+.|...|..++.. ....++||||+....++.+...|...|+.+..++|+++.++|.++++.|++|+..
T Consensus 318 -----~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~--- 387 (475)
T PRK01297 318 -----AGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIR--- 387 (475)
T ss_pred -----cchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCc---
Confidence 112344555555543 2356999999999999999999999999999999999999999999999998876
Q ss_pred EEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 437 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 437 ~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
+|++|+++++|||++++++||+||+|+++..|+|+.||++|.|+... ++.|+.++
T Consensus 388 vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 388 VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 79999999999999999999999999999999999999999997654 44455543
No 40
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.96 E-value=1.9e-26 Score=269.26 Aligned_cols=325 Identities=15% Similarity=0.175 Sum_probs=222.0
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc---C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---P 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~---p 129 (773)
.+|.|+|.+++..++ ++.+.|+..+||+|||++.+..+...+........+|||||+ .|+.||..++.++. +
T Consensus 27 ~~ptpiQ~~ai~~ll----~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHLL----NGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 479999999999887 577899999999999998654444433332333468999999 88899999987764 5
Q ss_pred CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChh--hHHHHHHHccc
Q 004103 130 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQ 205 (773)
Q Consensus 130 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~--s~~~~~l~~~~ 205 (773)
++.++.+.|......++... ....+|+|+|++.+...... +....+.+|||||||.+.+.. ..+..++..++
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp 178 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 (629)
T ss_pred CceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCC
Confidence 67777766655433322221 14689999999999765332 223357789999999986543 23444555554
Q ss_pred -cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhh
Q 004103 206 -IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 284 (773)
Q Consensus 206 -~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~ 284 (773)
....+++|||.-. ...++... ++.. |..+.- ..
T Consensus 179 ~~~q~llfSAT~p~-~i~~i~~~-----------------~l~~---------------------------~~~i~i-~~ 212 (629)
T PRK11634 179 EGHQTALFSATMPE-AIRRITRR-----------------FMKE---------------------------PQEVRI-QS 212 (629)
T ss_pred CCCeEEEEEccCCh-hHHHHHHH-----------------HcCC---------------------------CeEEEc-cC
Confidence 3456899999521 11111000 0000 000000 00
Q ss_pred HHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhc
Q 004103 285 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 364 (773)
Q Consensus 285 dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s 364 (773)
. ....|......+. +...
T Consensus 213 ~-~~~~~~i~q~~~~-------------------------------------------------------------v~~~ 230 (629)
T PRK11634 213 S-VTTRPDISQSYWT-------------------------------------------------------------VWGM 230 (629)
T ss_pred c-cccCCceEEEEEE-------------------------------------------------------------echh
Confidence 0 0000100000000 0112
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
.|...|.++|... ...++||||.....++.|...|...|+....+||.++..+|..++++|+++..+ +||+|+++
T Consensus 231 ~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~---ILVATdv~ 305 (629)
T PRK11634 231 RKNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD---ILIATDVA 305 (629)
T ss_pred hHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCC---EEEEcchH
Confidence 3556666666542 346899999999999999999999999999999999999999999999998877 89999999
Q ss_pred cccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHH
Q 004103 445 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 503 (773)
Q Consensus 445 g~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~ 503 (773)
++|||++.+++||+||+|.++..|+|++||++|.|..-.+. .|+.. -|..++..+
T Consensus 306 arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai--~~v~~--~e~~~l~~i 360 (629)
T PRK11634 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL--LFVEN--RERRLLRNI 360 (629)
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEE--EEech--HHHHHHHHH
Confidence 99999999999999999999999999999999999765433 33433 244444443
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.96 E-value=1.3e-26 Score=272.02 Aligned_cols=302 Identities=20% Similarity=0.267 Sum_probs=219.6
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~ 132 (773)
.+++|+|.+++..++ ++.+.+++.+||+|||+.+...+. . ..|.+|||+|. +++.++...+.... +.
T Consensus 12 ~~fr~~Q~~~i~~il----~g~dvlv~~PTG~GKTl~y~lpal--~----~~g~~lVisPl~sL~~dq~~~l~~~g--i~ 79 (591)
T TIGR01389 12 DDFRPGQEEIISHVL----DGRDVLVVMPTGGGKSLCYQVPAL--L----LKGLTVVISPLISLMKDQVDQLRAAG--VA 79 (591)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCccHhHHHHHHHH--H----cCCcEEEEcCCHHHHHHHHHHHHHcC--Cc
Confidence 479999999999888 578899999999999998753332 2 13578999999 88888998888763 55
Q ss_pred EEEecCCh--hHHHHHHHHHHhhcCCccEEEcCHHHHHHh--HHHHhhcCeeEEEEccccccCChhh-------HHHHHH
Q 004103 133 AVVYDGRP--DERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKNHEC-------ALAKTI 201 (773)
Q Consensus 133 v~~~~g~~--~~r~~~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaH~lkn~~s-------~~~~~l 201 (773)
+..+.++. .+...+...+.. +.++++++|++.+... ...+......+|||||||++...+. .+....
T Consensus 80 ~~~~~s~~~~~~~~~~~~~l~~--~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~ 157 (591)
T TIGR01389 80 AAYLNSTLSAKEQQDIEKALVN--GELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLA 157 (591)
T ss_pred EEEEeCCCCHHHHHHHHHHHhC--CCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHH
Confidence 55555543 233333333222 6789999999998643 3455667889999999999864322 233334
Q ss_pred HccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhh
Q 004103 202 SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 281 (773)
Q Consensus 202 ~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR 281 (773)
..++....++||||+......++...+.+-.+..+... |
T Consensus 158 ~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~------~----------------------------------- 196 (591)
T TIGR01389 158 ERFPQVPRIALTATADAETRQDIRELLRLADANEFITS------F----------------------------------- 196 (591)
T ss_pred HhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC------C-----------------------------------
Confidence 55556669999999876666666555443222211000 0
Q ss_pred hhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHH
Q 004103 282 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 361 (773)
Q Consensus 282 ~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~ 361 (773)
..|.....++.
T Consensus 197 -------~r~nl~~~v~~-------------------------------------------------------------- 207 (591)
T TIGR01389 197 -------DRPNLRFSVVK-------------------------------------------------------------- 207 (591)
T ss_pred -------CCCCcEEEEEe--------------------------------------------------------------
Confidence 00111000000
Q ss_pred hhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEec
Q 004103 362 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 441 (773)
Q Consensus 362 ~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt 441 (773)
...+...+...+... .+.+.||||......+.+..+|...|+++..+||+++.++|..+++.|..+... +|++|
T Consensus 208 -~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~---vlVaT 281 (591)
T TIGR01389 208 -KNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVK---VMVAT 281 (591)
T ss_pred -CCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCc---EEEEe
Confidence 011223334444332 267899999999999999999999999999999999999999999999998766 89999
Q ss_pred ccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEE
Q 004103 442 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVR 485 (773)
Q Consensus 442 ~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~ 485 (773)
.+.|+|||+++++.||+|++|.|+..|.|++||++|.|+...+.
T Consensus 282 ~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 282 NAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred chhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 99999999999999999999999999999999999999776654
No 42
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.95 E-value=5.6e-27 Score=277.34 Aligned_cols=309 Identities=17% Similarity=0.184 Sum_probs=215.0
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~ 132 (773)
..+||+|.++|..++ .+.++|+..+||.|||+.....+.. ..+.+|||+|+ +|+.++...+... ++.
T Consensus 459 ~sFRp~Q~eaI~aiL----~GrDVLVimPTGSGKSLcYQLPAL~------~~GiTLVISPLiSLmqDQV~~L~~~--GI~ 526 (1195)
T PLN03137 459 HSFRPNQREIINATM----SGYDVFVLMPTGGGKSLTYQLPALI------CPGITLVISPLVSLIQDQIMNLLQA--NIP 526 (1195)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCccHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhC--CCe
Confidence 489999999999888 5889999999999999986444322 13578999999 7777666666553 344
Q ss_pred EEEecCCh--hHHHHHHHHHHhhcCCccEEEcCHHHHHHh---HHHHhh----cCeeEEEEccccccCChhhH-------
Q 004103 133 AVVYDGRP--DERKAMREEFFSERGRFNVLITHYDLIMRD---RQYLKK----VQWIYMIVDEGHRLKNHECA------- 196 (773)
Q Consensus 133 v~~~~g~~--~~r~~~~~~~~~~~~~~~VvItTye~l~~~---~~~l~~----~~~~~vIiDEaH~lkn~~s~------- 196 (773)
...+.+.. .+...+........+.++++++|++.+... ...+.. ....+|||||||++...+..
T Consensus 527 Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~ 606 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQG 606 (1195)
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHH
Confidence 44444433 233333333333336789999999998643 122221 23789999999998654321
Q ss_pred HHHHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhh
Q 004103 197 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 276 (773)
Q Consensus 197 ~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p 276 (773)
+......+....+++||||.......++...|.+..+.+|.. -|.
T Consensus 607 L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~------Sf~----------------------------- 651 (1195)
T PLN03137 607 LGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ------SFN----------------------------- 651 (1195)
T ss_pred HHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec------ccC-----------------------------
Confidence 112224456677899999987666666655554332221110 000
Q ss_pred hhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchh
Q 004103 277 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 356 (773)
Q Consensus 277 ~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~ 356 (773)
-|.....++. . .
T Consensus 652 -------------RpNL~y~Vv~-k-~----------------------------------------------------- 663 (1195)
T PLN03137 652 -------------RPNLWYSVVP-K-T----------------------------------------------------- 663 (1195)
T ss_pred -------------ccceEEEEec-c-c-----------------------------------------------------
Confidence 1111111110 0 0
Q ss_pred hHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEE
Q 004103 357 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 436 (773)
Q Consensus 357 ~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v 436 (773)
...+..|.+++... ..+...||||..+..++.+...|...|++...+||+++.++|..++++|..+...
T Consensus 664 -------kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~--- 732 (1195)
T PLN03137 664 -------KKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEIN--- 732 (1195)
T ss_pred -------hhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCc---
Confidence 00011222222211 1245789999999999999999999999999999999999999999999998876
Q ss_pred EEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEE
Q 004103 437 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 488 (773)
Q Consensus 437 ~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~r 488 (773)
+||+|.++|+|||+++++.||+||.|.++..|.|++|||+|.|+...+..|+
T Consensus 733 VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 733 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 7999999999999999999999999999999999999999999987766554
No 43
>PTZ00424 helicase 45; Provisional
Probab=99.95 E-value=2.8e-26 Score=257.40 Aligned_cols=318 Identities=18% Similarity=0.255 Sum_probs=214.2
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~ 130 (773)
..|.|+|..++..++ ++.+.|+..+||+|||++++..+...+........+|||+|. .++.|+...+..++. .
T Consensus 49 ~~~~~~Q~~ai~~i~----~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPIL----DGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 479999999999888 588899999999999998765555554433334578999999 777888877777653 3
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCCh--hhHHHHHHHccc-
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNH--ECALAKTISGYQ- 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn~--~s~~~~~l~~~~- 205 (773)
..+....|....+..... + ....+|+|+|++.+..... .+..-.+++|||||+|++... ...+...+..+.
T Consensus 125 ~~~~~~~g~~~~~~~~~~-~---~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~ 200 (401)
T PTZ00424 125 VRCHACVGGTVVRDDINK-L---KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPP 200 (401)
T ss_pred ceEEEEECCcCHHHHHHH-H---cCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCC
Confidence 444444554433332221 1 1457899999998865432 122346789999999998542 334455555553
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhH
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 285 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~d 285 (773)
....+++|||+.. ...++... ++ ..+... ... ...
T Consensus 201 ~~~~i~~SAT~~~-~~~~~~~~--~~---------------~~~~~~-------------------------~~~--~~~ 235 (401)
T PTZ00424 201 DVQVALFSATMPN-EILELTTK--FM---------------RDPKRI-------------------------LVK--KDE 235 (401)
T ss_pred CcEEEEEEecCCH-HHHHHHHH--Hc---------------CCCEEE-------------------------EeC--CCC
Confidence 4568999999632 11111100 00 000000 000 000
Q ss_pred HhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcc
Q 004103 286 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 365 (773)
Q Consensus 286 v~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~ 365 (773)
+ .+.......+.++. ...
T Consensus 236 ~--~~~~~~~~~~~~~~------------------------------------------------------------~~~ 253 (401)
T PTZ00424 236 L--TLEGIRQFYVAVEK------------------------------------------------------------EEW 253 (401)
T ss_pred c--ccCCceEEEEecCh------------------------------------------------------------HHH
Confidence 0 00000011111100 001
Q ss_pred hHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccc
Q 004103 366 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 445 (773)
Q Consensus 366 K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg 445 (773)
+...+..++... ...++||||.....++.+...|...++.+..+||+++.++|..+++.|++|... +|++|++++
T Consensus 254 ~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~---vLvaT~~l~ 328 (401)
T PTZ00424 254 KFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR---VLITTDLLA 328 (401)
T ss_pred HHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC---EEEEccccc
Confidence 222333333322 346899999999999999999999999999999999999999999999998876 799999999
Q ss_pred ccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 446 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 446 ~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
+|||++.+++||+||++.++..+.|++||++|.|.. ..++.|++++
T Consensus 329 ~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~ 374 (401)
T PTZ00424 329 RGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPD 374 (401)
T ss_pred CCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHH
Confidence 999999999999999999999999999999999854 4456677655
No 44
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.4e-25 Score=255.27 Aligned_cols=331 Identities=21% Similarity=0.284 Sum_probs=234.5
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh-cCCC-CCEEEEeCC-cchHHHHHHHHhhcC-
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN-KGVT-GPHVIVAPK-AVLPNWINEFSTWAP- 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~-~~~~-gp~LIVvP~-sll~qW~~E~~k~~p- 129 (773)
..+.|.|..++..++ .+.+.|..+.||+|||+..+.-+...+.. .... .+.||++|+ .|..|-.+++.++..
T Consensus 50 ~~pt~IQ~~~IP~~l----~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLIL----AGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 478999999999888 57888999999999998854444333432 1222 238999999 888888888888764
Q ss_pred --CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCChh--hHHHHHHHc
Q 004103 130 --SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHE--CALAKTISG 203 (773)
Q Consensus 130 --~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn~~--s~~~~~l~~ 203 (773)
.+.+..+.|......+. ..+. ...+|||.|+..+..... .+...+..++|+|||.+|.+.+ ..+..++..
T Consensus 126 ~~~~~~~~i~GG~~~~~q~-~~l~---~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~ 201 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQI-EALK---RGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKA 201 (513)
T ss_pred cCCccEEEEECCCCHHHHH-HHHh---cCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHh
Confidence 56667777766555554 2222 248999999999986533 2445577899999999997653 345555555
Q ss_pred ccc-ceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhh-hhhhhhh
Q 004103 204 YQI-QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVI-RPFILRR 281 (773)
Q Consensus 204 ~~~-~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L-~p~~lRR 281 (773)
++. ...++.|||--. ...++ ..- .+ .|..+..
T Consensus 202 ~p~~~qtllfSAT~~~-~i~~l---~~~------------------------------------------~l~~p~~i~v 235 (513)
T COG0513 202 LPPDRQTLLFSATMPD-DIREL---ARR------------------------------------------YLNDPVEIEV 235 (513)
T ss_pred CCcccEEEEEecCCCH-HHHHH---HHH------------------------------------------HccCCcEEEE
Confidence 543 667899999532 22222 100 00 1111111
Q ss_pred hhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHH
Q 004103 282 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 361 (773)
Q Consensus 282 ~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~ 361 (773)
.........+...+..+.|+-
T Consensus 236 ~~~~~~~~~~~i~q~~~~v~~----------------------------------------------------------- 256 (513)
T COG0513 236 SVEKLERTLKKIKQFYLEVES----------------------------------------------------------- 256 (513)
T ss_pred ccccccccccCceEEEEEeCC-----------------------------------------------------------
Confidence 100110011222222222220
Q ss_pred hhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEec
Q 004103 362 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 441 (773)
Q Consensus 362 ~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt 441 (773)
...|+.+|..++...... ++||||.....++.|...|...|+++..|||++++++|..+++.|+++... +||+|
T Consensus 257 -~~~k~~~L~~ll~~~~~~--~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~---vLVaT 330 (513)
T COG0513 257 -EEEKLELLLKLLKDEDEG--RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR---VLVAT 330 (513)
T ss_pred -HHHHHHHHHHHHhcCCCC--eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCC---EEEEe
Confidence 014778888888765333 799999999999999999999999999999999999999999999998877 89999
Q ss_pred ccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHH
Q 004103 442 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 506 (773)
Q Consensus 442 ~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K 506 (773)
+++++|||++.+++||+||.|.++..|+||+||++|.|.+ -..+.|+++ .-|...+..+.+.
T Consensus 331 DvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~--G~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 331 DVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRK--GVAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred chhhccCCccccceeEEccCCCCHHHheeccCccccCCCC--CeEEEEeCc-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999944 455667766 2355565555544
No 45
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=3e-25 Score=236.21 Aligned_cols=377 Identities=19% Similarity=0.292 Sum_probs=261.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~ 130 (773)
..+||||...+..|.-. .....||+..++|.|||++.+..++.. .+.+||+|.. .-+.||..+|..|.. +
T Consensus 301 t~iRpYQEksL~KMFGN-gRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccCchHHHHHHHHhCC-CcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 48999999999988731 112358999999999999988777643 3478999987 568999999999983 3
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHH----------hHHHHhhcCeeEEEEccccccCChhhHHHHH
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMR----------DRQYLKKVQWIYMIVDEGHRLKNHECALAKT 200 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~----------~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~ 200 (773)
-.+..|.....++.. ....|+|+||.++.. -..++....|.++|+||+|-+ +...+.+.
T Consensus 374 ~~i~rFTsd~Ke~~~---------~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv--PA~MFRRV 442 (776)
T KOG1123|consen 374 DQICRFTSDAKERFP---------SGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV--PAKMFRRV 442 (776)
T ss_pred cceEEeeccccccCC---------CCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc--hHHHHHHH
Confidence 456667665554432 567899999999853 256688889999999999987 44555666
Q ss_pred HHccccceEEEecCCCCCCCHHHHHHhhccc-cCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhh
Q 004103 201 ISGYQIQRRLLLTGTPIQNSLQELWSLLNFL-LPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 279 (773)
Q Consensus 201 l~~~~~~~rllLTgTP~~n~~~el~~lL~~L-~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~l 279 (773)
+.-..+...|+||||-+..+ |=..=|||| .|.++..
T Consensus 443 lsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEA----------------------------------------- 479 (776)
T KOG1123|consen 443 LSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA----------------------------------------- 479 (776)
T ss_pred HHHHHHHhhccceeEEeecc--ccccccceeecchhhhc-----------------------------------------
Confidence 67778889999999987543 112224554 3443321
Q ss_pred hhhhhHHh--hcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhh
Q 004103 280 RRKKDEVE--KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK 357 (773)
Q Consensus 280 RR~k~dv~--~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~ 357 (773)
..-++. ..+.......|+|+||+.-...|-......+.. .
T Consensus 480 --nWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~l-----------L------------------------- 521 (776)
T KOG1123|consen 480 --NWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRML-----------L------------------------- 521 (776)
T ss_pred --cHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhhe-----------e-------------------------
Confidence 111110 113334456799999987555554422111100 0
Q ss_pred HHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEE
Q 004103 358 EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMF 437 (773)
Q Consensus 358 ~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~ 437 (773)
.+-+..|+.+..-++......|.|+|||+...-.+...+- ..|-+ .|.|.|++.+|.++++.|+.. ..+..+
T Consensus 522 --yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAi---kl~Kp--fIYG~Tsq~ERm~ILqnFq~n-~~vNTI 593 (776)
T KOG1123|consen 522 --YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAI---KLGKP--FIYGPTSQNERMKILQNFQTN-PKVNTI 593 (776)
T ss_pred --eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHH---HcCCc--eEECCCchhHHHHHHHhcccC-CccceE
Confidence 0124568888888898888899999999998665554443 44444 478999999999999999873 334444
Q ss_pred EEecccccccCCcccCCeeEEeCCCC-ChhhHHHHhhhhhhcCCcC----eEEEEEEEeCCCHHHHHHHHHHHHHhHHHH
Q 004103 438 LLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKK----EVRVFVLVSVGSIEEVILERAKQKMGIDAK 512 (773)
Q Consensus 438 LlSt~agg~GLNL~~ad~VI~~D~~w-Np~~~~Qa~gRa~RiGQ~k----~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~ 512 (773)
.+ +.+|...+||+.|+++|-..+.. +-.+..||.||+.|.-..+ ++..|-|+..+|.|..--..-+ .-
T Consensus 594 Fl-SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ------~F 666 (776)
T KOG1123|consen 594 FL-SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQ------QF 666 (776)
T ss_pred EE-eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhh------hh
Confidence 44 48999999999999999998886 6789999999999976433 2899999999998765432211 12
Q ss_pred HHHcCcc-----------CC----CCCHHHHHHHHHHHHHhccCCCC
Q 004103 513 VIQAGLF-----------NT----TSTAQDRREMLKEIMRRGTSSLG 544 (773)
Q Consensus 513 vi~~g~~-----------~~----~~~~~~~~~~l~~i~~~~~~~~~ 544 (773)
.++.|.. +. -.+..++.++|+.+|.......+
T Consensus 667 LidQGYsfkVit~L~gme~~~~l~y~skeeq~~LLq~Vl~a~d~~~e 713 (776)
T KOG1123|consen 667 LIDQGYSFKVITNLPGMENLEDLAYASKEEQLELLQKVLLASDLDAE 713 (776)
T ss_pred hhhcCceEEEeecCCCcCcCcccccCCHHHHHHHHHHHHhcchhhhc
Confidence 3444421 11 13456677788877765554443
No 46
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.94 E-value=2.3e-24 Score=253.68 Aligned_cols=304 Identities=18% Similarity=0.247 Sum_probs=205.8
Q ss_pred CCchHHHHHHHHHHHHhhcC--CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC-
Q 004103 54 GELRAYQLEGLQWMLSLFNN--NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP- 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~--~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p- 129 (773)
.+|.++|.+++..++..... +.+.+|..+||+|||++++..+...... ...++|++|+ .|..|+.+++.++++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 48999999999999876433 3467999999999999987666555543 3478999999 777999999999986
Q ss_pred -CceEEEecCChhH--HHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccc-
Q 004103 130 -SIAAVVYDGRPDE--RKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ- 205 (773)
Q Consensus 130 -~~~v~~~~g~~~~--r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~- 205 (773)
++++.++.|+... +......+.. +.++|+|+|+..+.... .-.+..+|||||+|++.-. ..........
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i~~--g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg~~--qr~~l~~~~~~ 383 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETIAS--GQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFGVE--QRKKLREKGQG 383 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHHhC--CCCCEEEecHHHHhccc---cccccceEEEechhhccHH--HHHHHHHhccc
Confidence 4788888876433 3333333322 67899999999875432 1235689999999997421 1122222222
Q ss_pred --cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhh
Q 004103 206 --IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 283 (773)
Q Consensus 206 --~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k 283 (773)
..+.+++||||+...+.-. +...+..
T Consensus 384 ~~~~~~l~~SATp~prtl~l~--~~~~l~~-------------------------------------------------- 411 (630)
T TIGR00643 384 GFTPHVLVMSATPIPRTLALT--VYGDLDT-------------------------------------------------- 411 (630)
T ss_pred CCCCCEEEEeCCCCcHHHHHH--hcCCcce--------------------------------------------------
Confidence 5778999999976432210 0000000
Q ss_pred hHHhhcCCCcee--EEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHH
Q 004103 284 DEVEKYLPGKSQ--VILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 361 (773)
Q Consensus 284 ~dv~~~LP~k~e--~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~ 361 (773)
.+...+|.... ....+...
T Consensus 412 -~~i~~~p~~r~~i~~~~~~~~---------------------------------------------------------- 432 (630)
T TIGR00643 412 -SIIDELPPGRKPITTVLIKHD---------------------------------------------------------- 432 (630)
T ss_pred -eeeccCCCCCCceEEEEeCcc----------------------------------------------------------
Confidence 00011222110 00000000
Q ss_pred hhcchHHHHHHHHHHhhhcCCcEEEEeecH--------HHHHHHHHHHHh--CCCeEEEEcCCCCHHHHHHHHHhhcCCC
Q 004103 362 RASGKFELLDRLLPKLRKSGHRVLLFSQMT--------RLMDILEIYLKL--NDFKFLRLDGSTKTEERGTLLKQFNAPD 431 (773)
Q Consensus 362 ~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~--------~~ld~L~~~L~~--~g~~~~~i~G~~~~~eR~~~i~~Fn~~~ 431 (773)
.+ ..+...+.+....+++++|||... ..+..+.+.|.. .++++..+||.++.++|..++++|.++.
T Consensus 433 ---~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~ 508 (630)
T TIGR00643 433 ---EK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGE 508 (630)
T ss_pred ---hH-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 00 112222333334578999998754 234445555543 4789999999999999999999999988
Q ss_pred CCcEEEEEecccccccCCcccCCeeEEeCCCC-ChhhHHHHhhhhhhcCCcCeEE
Q 004103 432 SPYFMFLLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKEVR 485 (773)
Q Consensus 432 ~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~w-Np~~~~Qa~gRa~RiGQ~k~V~ 485 (773)
.+ +|+||.+.++|||++++++||+++.+. +...+.|+.||++|-|....|.
T Consensus 509 ~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 509 VD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred CC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 77 899999999999999999999999985 6788999999999998765554
No 47
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.94 E-value=3e-24 Score=255.44 Aligned_cols=331 Identities=17% Similarity=0.201 Sum_probs=218.2
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc-CCce
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA-PSIA 132 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~-p~~~ 132 (773)
+|+|||.+++..++ ++.+.|++.+||+|||+..+..+...+.. .....+|||+|+ .|..|...++.++. .++.
T Consensus 36 ~p~~~Q~~ai~~il----~G~nvvv~apTGSGKTla~~LPiL~~l~~-~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~ 110 (742)
T TIGR03817 36 RPWQHQARAAELAH----AGRHVVVATGTASGKSLAYQLPVLSALAD-DPRATALYLAPTKALAADQLRAVRELTLRGVR 110 (742)
T ss_pred cCCHHHHHHHHHHH----CCCCEEEECCCCCcHHHHHHHHHHHHHhh-CCCcEEEEEcChHHHHHHHHHHHHHhccCCeE
Confidence 79999999999887 68899999999999999975544443332 223478999999 77788888888876 3577
Q ss_pred EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhH--------HHHhhcCeeEEEEccccccCC-hhhHHHHHHHc
Q 004103 133 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--------QYLKKVQWIYMIVDEGHRLKN-HECALAKTISG 203 (773)
Q Consensus 133 v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~--------~~l~~~~~~~vIiDEaH~lkn-~~s~~~~~l~~ 203 (773)
+.++.|....... ..+ . ...+|+|+|++.+.... ..| .+.++|||||+|.+.+ ..+.+...+.+
T Consensus 111 v~~~~Gdt~~~~r--~~i-~--~~~~IivtTPd~L~~~~L~~~~~~~~~l--~~l~~vViDEah~~~g~fg~~~~~il~r 183 (742)
T TIGR03817 111 PATYDGDTPTEER--RWA-R--EHARYVLTNPDMLHRGILPSHARWARFL--RRLRYVVIDECHSYRGVFGSHVALVLRR 183 (742)
T ss_pred EEEEeCCCCHHHH--HHH-h--cCCCEEEEChHHHHHhhccchhHHHHHH--hcCCEEEEeChhhccCccHHHHHHHHHH
Confidence 8888887553222 111 1 45799999999986321 112 2568999999999965 23333333333
Q ss_pred c--------ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhh
Q 004103 204 Y--------QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIR 275 (773)
Q Consensus 204 ~--------~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~ 275 (773)
+ .....+++|||. +++.++... + ++.+.
T Consensus 184 L~ri~~~~g~~~q~i~~SATi--~n~~~~~~~---l--------------~g~~~------------------------- 219 (742)
T TIGR03817 184 LRRLCARYGASPVFVLASATT--ADPAAAASR---L--------------IGAPV------------------------- 219 (742)
T ss_pred HHHHHHhcCCCCEEEEEecCC--CCHHHHHHH---H--------------cCCCe-------------------------
Confidence 2 234679999994 233332111 1 01000
Q ss_pred hhhhhhhhhHHhhcCCCcee-EEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccc
Q 004103 276 PFILRRKKDEVEKYLPGKSQ-VILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNM 354 (773)
Q Consensus 276 p~~lRR~k~dv~~~LP~k~e-~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~ 354 (773)
.+ .. ....|.... ..+..+ ... . . ....+.. .++
T Consensus 220 --~~--i~---~~~~~~~~~~~~~~~p-~~~-----~-~--------~~~~~~~---------~r~-------------- 254 (742)
T TIGR03817 220 --VA--VT---EDGSPRGARTVALWEP-PLT-----E-L--------TGENGAP---------VRR-------------- 254 (742)
T ss_pred --EE--EC---CCCCCcCceEEEEecC-Ccc-----c-c--------ccccccc---------ccc--------------
Confidence 00 00 000111111 111111 000 0 0 0000000 000
Q ss_pred hhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC--------CCeEEEEcCCCCHHHHHHHHHh
Q 004103 355 WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--------DFKFLRLDGSTKTEERGTLLKQ 426 (773)
Q Consensus 355 ~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~--------g~~~~~i~G~~~~~eR~~~i~~ 426 (773)
.....+...+..++ ..+.++||||+.+..++.+..+|... +.++..++|++++++|.+++++
T Consensus 255 ------~~~~~~~~~l~~l~----~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 255 ------SASAEAADLLADLV----AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred ------chHHHHHHHHHHHH----HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 00112333444444 34789999999999999999887653 5678899999999999999999
Q ss_pred hcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHH
Q 004103 427 FNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILE 501 (773)
Q Consensus 427 Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~ 501 (773)
|.+|... +|+||+++++|||++++++||+||.|-+...|.||+||++|.|+... ++.++..+..|..++.
T Consensus 325 f~~G~i~---vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 325 LRDGELL---GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred HHcCCce---EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 9998876 79999999999999999999999999999999999999999997643 4456666777776554
No 48
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.93 E-value=5.7e-24 Score=257.88 Aligned_cols=326 Identities=18% Similarity=0.155 Sum_probs=205.8
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHH-HHHHHHhcC-----CCCCEEEEeCC-cchHHHHHHHH-
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLENKG-----VTGPHVIVAPK-AVLPNWINEFS- 125 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aial-i~~l~~~~~-----~~gp~LIVvP~-sll~qW~~E~~- 125 (773)
..|+|+|.+++..+. ++.++|++.+||+|||+.++.. +..+..... ....+|+|+|+ .|..|+...+.
T Consensus 31 ~~~tpiQ~~Ai~~il----~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIH----EGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 369999999998876 5889999999999999997644 444443211 12348999998 77777665332
Q ss_pred ------hhc-------CCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhH--HHH--hhcCeeEEEEcccc
Q 004103 126 ------TWA-------PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYL--KKVQWIYMIVDEGH 188 (773)
Q Consensus 126 ------k~~-------p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~--~~l--~~~~~~~vIiDEaH 188 (773)
.++ +.+.+.+.+|.......... .. ..++|+|||++.+.... ..+ .-...++|||||+|
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~--l~--~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H 182 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKM--LK--KPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIH 182 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHH--Hh--CCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechh
Confidence 332 46778888887543332211 11 46799999999985321 111 11256889999999
Q ss_pred ccCCh--hhHHHHHHHcc-----ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChH
Q 004103 189 RLKNH--ECALAKTISGY-----QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDE 261 (773)
Q Consensus 189 ~lkn~--~s~~~~~l~~~-----~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~ 261 (773)
.+.+. +..+...+..+ ....+++||||. .++.++...+. ..... ..
T Consensus 183 ~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~~L~---~~~~~---------------~~------- 235 (876)
T PRK13767 183 SLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAKFLV---GYEDD---------------GE------- 235 (876)
T ss_pred hhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHHHhc---Ccccc---------------CC-------
Confidence 98643 22233233222 345789999996 23444332221 10000 00
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHH
Q 004103 262 EQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKC 341 (773)
Q Consensus 262 ~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~ 341 (773)
-++..+ +...........+.++....
T Consensus 236 ------------~r~~~i------v~~~~~k~~~i~v~~p~~~l------------------------------------ 261 (876)
T PRK13767 236 ------------PRDCEI------VDARFVKPFDIKVISPVDDL------------------------------------ 261 (876)
T ss_pred ------------CCceEE------EccCCCccceEEEeccCccc------------------------------------
Confidence 000000 00000000001111110000
Q ss_pred hCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHh------CCCeEEEEcCCC
Q 004103 342 CNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL------NDFKFLRLDGST 415 (773)
Q Consensus 342 ~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~------~g~~~~~i~G~~ 415 (773)
.... .......+...+..+...++++||||+.+..++.+...|.. .+..+..+||++
T Consensus 262 ------~~~~-----------~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~l 324 (876)
T PRK13767 262 ------IHTP-----------AEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSL 324 (876)
T ss_pred ------cccc-----------cchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCC
Confidence 0000 00001122233334444578999999999999999998876 246789999999
Q ss_pred CHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhc-CCcCeEEEEE
Q 004103 416 KTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI-GQKKEVRVFV 488 (773)
Q Consensus 416 ~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~Ri-GQ~k~V~V~r 488 (773)
+.++|..+++.|++|... +|+||.++++|||++.+++||+|++|.++..++||+||++|. |......++.
T Consensus 325 s~~~R~~ve~~fk~G~i~---vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 325 SREVRLEVEEKLKRGELK---VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred CHHHHHHHHHHHHcCCCe---EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 999999999999998765 799999999999999999999999999999999999999986 4445555554
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.93 E-value=6.7e-24 Score=251.42 Aligned_cols=306 Identities=18% Similarity=0.213 Sum_probs=206.8
Q ss_pred CCchHHHHHHHHHHHHhhcC--CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCC
Q 004103 54 GELRAYQLEGLQWMLSLFNN--NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~--~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~ 130 (773)
.+|+++|..++..+..-... ..+.+|..+||+|||++++..+...... ...+||++|+ .|..|+...+.++++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 57999999999998875433 2467999999999999987666555443 3478999999 7888899999999864
Q ss_pred --ceEEEecCChh--HHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc-c
Q 004103 131 --IAAVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-Q 205 (773)
Q Consensus 131 --~~v~~~~g~~~--~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~-~ 205 (773)
+++.++.|... ++......+.. +..+|+|+|+..+.... .-.+..+|||||+|++. ......+... .
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l~~--g~~~IvVgT~~ll~~~v---~~~~l~lvVIDE~Hrfg---~~qr~~l~~~~~ 408 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAIAS--GEADIVIGTHALIQDDV---EFHNLGLVIIDEQHRFG---VEQRLALREKGE 408 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHHhC--CCCCEEEchHHHhcccc---hhcccceEEEechhhhh---HHHHHHHHhcCC
Confidence 77888888654 33333333322 57899999998875422 12356899999999983 2223333322 3
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhH
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 285 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~d 285 (773)
..+.++|||||+...+.-. +...+.+ .
T Consensus 409 ~~~iL~~SATp~prtl~~~--~~g~~~~---------------------------------------------------s 435 (681)
T PRK10917 409 NPHVLVMTATPIPRTLAMT--AYGDLDV---------------------------------------------------S 435 (681)
T ss_pred CCCEEEEeCCCCHHHHHHH--HcCCCce---------------------------------------------------E
Confidence 5778999999975322100 0000000 0
Q ss_pred HhhcCCCce--eEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhh
Q 004103 286 VEKYLPGKS--QVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 363 (773)
Q Consensus 286 v~~~LP~k~--e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~ 363 (773)
+...+|+.. .....+.
T Consensus 436 ~i~~~p~~r~~i~~~~~~-------------------------------------------------------------- 453 (681)
T PRK10917 436 VIDELPPGRKPITTVVIP-------------------------------------------------------------- 453 (681)
T ss_pred EEecCCCCCCCcEEEEeC--------------------------------------------------------------
Confidence 001122210 0011100
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHH--------HHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHhhcCCCCC
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTR--------LMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDSP 433 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~--------~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~ 433 (773)
..+...+...+......|++++|||.... .+..+.+.|... ++++..+||+++.++|..++++|.++..+
T Consensus 454 ~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ 533 (681)
T PRK10917 454 DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEID 533 (681)
T ss_pred cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 00111122223333356889999997532 234455555543 57899999999999999999999998876
Q ss_pred cEEEEEecccccccCCcccCCeeEEeCCCC-ChhhHHHHhhhhhhcCCcCeEEEEEEE
Q 004103 434 YFMFLLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKEVRVFVLV 490 (773)
Q Consensus 434 ~~v~LlSt~agg~GLNL~~ad~VI~~D~~w-Np~~~~Qa~gRa~RiGQ~k~V~V~rLi 490 (773)
+|+||.+.++|||++++++||+++++. ....+.|+.||++|.|....| |.+.
T Consensus 534 ---ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~--ill~ 586 (681)
T PRK10917 534 ---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYC--VLLY 586 (681)
T ss_pred ---EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEE--EEEE
Confidence 899999999999999999999999985 578899999999998865444 4444
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.93 E-value=5.4e-24 Score=255.81 Aligned_cols=307 Identities=17% Similarity=0.220 Sum_probs=210.8
Q ss_pred CCCchHHHHHHHHHHHHhhcCC--CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC
Q 004103 53 GGELRAYQLEGLQWMLSLFNNN--LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP 129 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~--~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p 129 (773)
+.+|.|+|..++..+..-...+ .+.+++.+||+|||.+++..+....... ..++|+||+ .|..|....|.++++
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~~LA~Q~~~~f~~~~~ 525 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTTLLAQQHFETFKERFA 525 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcHHHHHHHHHHHHHHhc
Confidence 3579999999999998754433 4679999999999999876655544432 478999999 778889999998875
Q ss_pred C--ceEEEecCCh--hHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc-
Q 004103 130 S--IAAVVYDGRP--DERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY- 204 (773)
Q Consensus 130 ~--~~v~~~~g~~--~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~- 204 (773)
. +++.+++|.. .++......+.. +..+|+|+|+..+.++. .-.+..+|||||+|++.- .....+..+
T Consensus 526 ~~~i~v~~Lsg~~~~~e~~~~~~~l~~--g~~dIVIGTp~ll~~~v---~f~~L~llVIDEahrfgv---~~~~~L~~~~ 597 (926)
T TIGR00580 526 NFPVTIELLSRFRSAKEQNEILKELAS--GKIDILIGTHKLLQKDV---KFKDLGLLIIDEEQRFGV---KQKEKLKELR 597 (926)
T ss_pred cCCcEEEEEeccccHHHHHHHHHHHHc--CCceEEEchHHHhhCCC---CcccCCEEEeecccccch---hHHHHHHhcC
Confidence 4 4555666543 234444433332 57899999997654321 123568999999999832 333445544
Q ss_pred ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhh
Q 004103 205 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 284 (773)
Q Consensus 205 ~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~ 284 (773)
.....++|||||+...+... +....++.. +.
T Consensus 598 ~~~~vL~~SATpiprtl~~~--l~g~~d~s~-------------------------------------------I~---- 628 (926)
T TIGR00580 598 TSVDVLTLSATPIPRTLHMS--MSGIRDLSI-------------------------------------------IA---- 628 (926)
T ss_pred CCCCEEEEecCCCHHHHHHH--HhcCCCcEE-------------------------------------------Ee----
Confidence 35678999999975433211 101100100 00
Q ss_pred HHhhcCCCceeE---EEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHH
Q 004103 285 EVEKYLPGKSQV---ILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 361 (773)
Q Consensus 285 dv~~~LP~k~e~---~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~ 361 (773)
.|+.... ...++.+.
T Consensus 629 -----~~p~~R~~V~t~v~~~~~--------------------------------------------------------- 646 (926)
T TIGR00580 629 -----TPPEDRLPVRTFVMEYDP--------------------------------------------------------- 646 (926)
T ss_pred -----cCCCCccceEEEEEecCH---------------------------------------------------------
Confidence 0111000 00001000
Q ss_pred hhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEE
Q 004103 362 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 439 (773)
Q Consensus 362 ~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~Ll 439 (773)
......++..+ ..+.+++|||+....++.+...|... ++++..+||.++.++|.+++++|.++..+ +||
T Consensus 647 -----~~i~~~i~~el-~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~---ILV 717 (926)
T TIGR00580 647 -----ELVREAIRREL-LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQ---VLV 717 (926)
T ss_pred -----HHHHHHHHHHH-HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCC---EEE
Confidence 00001111222 34779999999999999999999874 78999999999999999999999998877 899
Q ss_pred ecccccccCCcccCCeeEEeCCCC-ChhhHHHHhhhhhhcCCcCeEEEEEEEeC
Q 004103 440 STRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKEVRVFVLVSV 492 (773)
Q Consensus 440 St~agg~GLNL~~ad~VI~~D~~w-Np~~~~Qa~gRa~RiGQ~k~V~V~rLi~~ 492 (773)
||.+.++|||++++++||+++.+. ....+.|+.||++|.|.. -.+|.|+..
T Consensus 718 aT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 718 CTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred ECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 999999999999999999999964 567899999999998864 445555544
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.92 E-value=1.9e-23 Score=256.13 Aligned_cols=300 Identities=18% Similarity=0.222 Sum_probs=205.7
Q ss_pred CCchHHHHHHHHHHHHhhcC--CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCC
Q 004103 54 GELRAYQLEGLQWMLSLFNN--NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~--~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~ 130 (773)
.+|.+.|.+++.-++.-... +.+.+++.+||+|||.+++.++...... ...+||+||+ .|..|....|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 48999999999988865433 3567999999999999876544433332 3579999999 6678888888876643
Q ss_pred --ceEEEecC--ChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc-c
Q 004103 131 --IAAVVYDG--RPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-Q 205 (773)
Q Consensus 131 --~~v~~~~g--~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~-~ 205 (773)
+.+.++.| +..++......+.. +..+|+|+|++.+..+. .-.++++|||||+|++.. .....++.+ .
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l~~--g~~dIVVgTp~lL~~~v---~~~~L~lLVIDEahrfG~---~~~e~lk~l~~ 747 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEAAE--GKIDILIGTHKLLQSDV---KWKDLGLLIVDEEHRFGV---RHKERIKAMRA 747 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHh--CCCCEEEECHHHHhCCC---CHhhCCEEEEechhhcch---hHHHHHHhcCC
Confidence 45555554 33344333333222 57899999998764321 223578999999999832 233445544 4
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhH
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 285 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~d 285 (773)
....+++||||++..+.... ..+.++. ++.
T Consensus 748 ~~qvLl~SATpiprtl~l~~--~gl~d~~-------------------------------------------~I~----- 777 (1147)
T PRK10689 748 DVDILTLTATPIPRTLNMAM--SGMRDLS-------------------------------------------IIA----- 777 (1147)
T ss_pred CCcEEEEcCCCCHHHHHHHH--hhCCCcE-------------------------------------------EEe-----
Confidence 56789999999765432110 0000110 000
Q ss_pred HhhcCCCcee---EEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHh
Q 004103 286 VEKYLPGKSQ---VILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIR 362 (773)
Q Consensus 286 v~~~LP~k~e---~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~ 362 (773)
.|+... ..+.....
T Consensus 778 ----~~p~~r~~v~~~~~~~~----------------------------------------------------------- 794 (1147)
T PRK10689 778 ----TPPARRLAVKTFVREYD----------------------------------------------------------- 794 (1147)
T ss_pred ----cCCCCCCCceEEEEecC-----------------------------------------------------------
Confidence 011100 00000000
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEe
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 440 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlS 440 (773)
.......++..+. .+.+++|||+....++.+...|... ++++..+||.++.++|.+++.+|.++..+ +|||
T Consensus 795 ---~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~---VLVa 867 (1147)
T PRK10689 795 ---SLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVC 867 (1147)
T ss_pred ---cHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCC---EEEE
Confidence 0001122333333 3678999999999999999999876 78999999999999999999999998877 8999
Q ss_pred cccccccCCcccCCeeEEeCCC-CChhhHHHHhhhhhhcCCcCeE
Q 004103 441 TRAGGLGLNLQTADTVIIFDSD-WNPQMDQQAEDRAHRIGQKKEV 484 (773)
Q Consensus 441 t~agg~GLNL~~ad~VI~~D~~-wNp~~~~Qa~gRa~RiGQ~k~V 484 (773)
|+++++|||++.+++||+.+++ ++...+.|+.||++|.|.+..+
T Consensus 868 TdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a 912 (1147)
T PRK10689 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 (1147)
T ss_pred CchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEE
Confidence 9999999999999999988775 6778899999999998876543
No 52
>PRK02362 ski2-like helicase; Provisional
Probab=99.91 E-value=1.5e-22 Score=242.99 Aligned_cols=320 Identities=18% Similarity=0.140 Sum_probs=205.8
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC-Cc
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SI 131 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p-~~ 131 (773)
.+|+|+|.+++..++ ..+.+.+++.+||+|||+.+...+...+. ..+++|+|+|. +++.|+..+|.++.+ +.
T Consensus 22 ~~l~p~Q~~ai~~~~---~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 22 EELYPPQAEAVEAGL---LDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred CcCCHHHHHHHHHHH---hCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 379999999997533 36789999999999999998655444433 24589999999 889999999988754 57
Q ss_pred eEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChh--hHHHHHHHcc---
Q 004103 132 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGY--- 204 (773)
Q Consensus 132 ~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~--s~~~~~l~~~--- 204 (773)
++..+.|........ ....+|+|+|++.+...... ......++|||||+|.+.+.. ..+-..+..+
T Consensus 96 ~v~~~tGd~~~~~~~-------l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~ 168 (737)
T PRK02362 96 RVGISTGDYDSRDEW-------LGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRL 168 (737)
T ss_pred EEEEEeCCcCccccc-------cCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhc
Confidence 788888865432211 14679999999987543221 011256899999999996532 2222222222
Q ss_pred -ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhh
Q 004103 205 -QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 283 (773)
Q Consensus 205 -~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k 283 (773)
...+.++||||+- +..++...++ ...+.+ -.+|.-+
T Consensus 169 ~~~~qii~lSATl~--n~~~la~wl~---~~~~~~----------------------------------~~rpv~l---- 205 (737)
T PRK02362 169 NPDLQVVALSATIG--NADELADWLD---AELVDS----------------------------------EWRPIDL---- 205 (737)
T ss_pred CCCCcEEEEcccCC--CHHHHHHHhC---CCcccC----------------------------------CCCCCCC----
Confidence 3457899999962 3444433221 111100 0011110
Q ss_pred hHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhh
Q 004103 284 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 363 (773)
Q Consensus 284 ~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~ 363 (773)
...+...-. + .... .. ..+ ..
T Consensus 206 -----------~~~v~~~~~---------~------~~~~---~~----------------~~~--------------~~ 226 (737)
T PRK02362 206 -----------REGVFYGGA---------I------HFDD---SQ----------------REV--------------EV 226 (737)
T ss_pred -----------eeeEecCCe---------e------cccc---cc----------------ccC--------------CC
Confidence 000000000 0 0000 00 000 00
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC------------------------------------CCe
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN------------------------------------DFK 407 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~------------------------------------g~~ 407 (773)
..+... ..++......++++||||+.+..++.++..|... ...
T Consensus 227 ~~~~~~-~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 227 PSKDDT-LNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred ccchHH-HHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 001111 1122222236789999999998777766665432 135
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEE----eC-----CCCChhhHHHHhhhhhhc
Q 004103 408 FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII----FD-----SDWNPQMDQQAEDRAHRI 478 (773)
Q Consensus 408 ~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~----~D-----~~wNp~~~~Qa~gRa~Ri 478 (773)
+..+||+++.++|..+.+.|++|... +|++|.+++.|+|+++.++||. || .|.++..+.|++|||+|.
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~---VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIK---VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCe---EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 77889999999999999999998766 7999999999999999888876 77 577889999999999999
Q ss_pred CCcCeEEEEEEEeC
Q 004103 479 GQKKEVRVFVLVSV 492 (773)
Q Consensus 479 GQ~k~V~V~rLi~~ 492 (773)
|....-.++.++..
T Consensus 383 g~d~~G~~ii~~~~ 396 (737)
T PRK02362 383 GLDPYGEAVLLAKS 396 (737)
T ss_pred CCCCCceEEEEecC
Confidence 98766666666654
No 53
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.91 E-value=8.9e-23 Score=249.43 Aligned_cols=352 Identities=18% Similarity=0.248 Sum_probs=210.1
Q ss_pred CCchHHHHHHHHHHHHhhcC-CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCc
Q 004103 54 GELRAYQLEGLQWMLSLFNN-NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSI 131 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~-~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~ 131 (773)
..|||||.++|..+...+.+ ..+++|.+.||+|||+++++++..++... ..+++|||||. .|+.||..+|..+.+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~-~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAK-RFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcC-ccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 57999999999988876544 45789999999999999999988887653 34589999998 89999999999875321
Q ss_pred e--EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH-------HhhcCeeEEEEccccccCCh---------
Q 004103 132 A--AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY-------LKKVQWIYMIVDEGHRLKNH--------- 193 (773)
Q Consensus 132 ~--v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~-------l~~~~~~~vIiDEaH~lkn~--------- 193 (773)
. +....+.. .+.... ......|+|+|++++.+.... +..-.|++||||||||....
T Consensus 491 ~~~~~~i~~i~----~L~~~~--~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~ 564 (1123)
T PRK11448 491 DQTFASIYDIK----GLEDKF--PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGEL 564 (1123)
T ss_pred ccchhhhhchh----hhhhhc--ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchh
Confidence 1 11011111 111111 114578999999998764211 22346889999999996310
Q ss_pred --------hhHHHHHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCC--CChHhHHHHhcc----cccccCC----
Q 004103 194 --------ECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIF--NSVENFEEWFNA----PFKDRGQ---- 255 (773)
Q Consensus 194 --------~s~~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~--~~~~~f~~~f~~----~~~~~~~---- 255 (773)
.++..+.+..+. ..+|+|||||..+. .+++. ..++ .-.+....-+.. |+.....
T Consensus 565 ~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t-~~~FG------~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~ 636 (1123)
T PRK11448 565 QFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT-TEIFG------EPVYTYSYREAVIDGYLIDHEPPIRIETRLSQE 636 (1123)
T ss_pred ccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch-hHHhC------CeeEEeeHHHHHhcCCcccCcCCEEEEEEeccc
Confidence 134444455444 58899999998543 22222 1111 111111111111 1111100
Q ss_pred -ccCChHHHHHHHHHHHhhhhhhhhhhhhhHHh-hcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHH
Q 004103 256 -VALTDEEQLLIIRRLHHVIRPFILRRKKDEVE-KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQN 333 (773)
Q Consensus 256 -~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~-~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~ 333 (773)
+.....+....+. + ...++. ..+|+. +....+...+.++..
T Consensus 637 gi~~~~~e~~~~~~-------~-----~~~~i~~~~l~d~----~~~~~~~~~~~vi~~--------------------- 679 (1123)
T PRK11448 637 GIHFEKGEEVEVIN-------T-----QTGEIDLATLEDE----VDFEVEDFNRRVITE--------------------- 679 (1123)
T ss_pred cccccccchhhhcc-------h-----hhhhhhhccCcHH----HhhhHHHHHHHHhhH---------------------
Confidence 0001110000000 0 000110 112211 000000000000000
Q ss_pred HHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhh-hcCCcEEEEeecHHHHHHHHHHHHhC------CC
Q 004103 334 LSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLR-KSGHRVLLFSQMTRLMDILEIYLKLN------DF 406 (773)
Q Consensus 334 ~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~-~~g~kvLIFsq~~~~ld~L~~~L~~~------g~ 406 (773)
...+. .+..++..+. ..+.|+||||.....++.+.+.|... ++
T Consensus 680 --~~~~~----------------------------i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~ 729 (1123)
T PRK11448 680 --SFNRV----------------------------VCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQV 729 (1123)
T ss_pred --HHHHH----------------------------HHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCc
Confidence 00000 1111222221 12369999999999999888876542 22
Q ss_pred ---eEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCC---
Q 004103 407 ---KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQ--- 480 (773)
Q Consensus 407 ---~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ--- 480 (773)
.+..++|+++ ++..++++|.++..+ .+++|++.+++|+|.+.+++||++.++-++..+.|++||+.|...
T Consensus 730 ~~~~v~~itg~~~--~~~~li~~Fk~~~~p--~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~ 805 (1123)
T PRK11448 730 EDDAVIKITGSID--KPDQLIRRFKNERLP--NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIG 805 (1123)
T ss_pred CccceEEEeCCcc--chHHHHHHHhCCCCC--eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCC
Confidence 4567999886 578899999886543 578999999999999999999999999999999999999999865
Q ss_pred cCeEEEEEEEe
Q 004103 481 KKEVRVFVLVS 491 (773)
Q Consensus 481 ~k~V~V~rLi~ 491 (773)
|....||.++.
T Consensus 806 K~~f~I~D~vg 816 (1123)
T PRK11448 806 KTHFRIFDAVD 816 (1123)
T ss_pred CceEEEEehHH
Confidence 55588887754
No 54
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=3e-22 Score=214.26 Aligned_cols=326 Identities=19% Similarity=0.225 Sum_probs=218.5
Q ss_pred cCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHH-HHHHHHHHHhcC--CCCCEEEEeCC-cchHH---HHHH
Q 004103 51 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT-IALIAYLLENKG--VTGPHVIVAPK-AVLPN---WINE 123 (773)
Q Consensus 51 l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~a-iali~~l~~~~~--~~gp~LIVvP~-sll~q---W~~E 123 (773)
+....+.|.|..+|.-.+ -+...+-|..||+|||... +-++..|+.... ..-++||+||+ .|.-| ....
T Consensus 199 lGy~~PTpIQ~a~IPval----lgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~q 274 (691)
T KOG0338|consen 199 LGYKKPTPIQVATIPVAL----LGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQ 274 (691)
T ss_pred cCCCCCCchhhhcccHHh----hcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHH
Confidence 333578899999997655 3666677889999999874 445555555422 22368999998 55444 4555
Q ss_pred HHhhcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhh---cCeeEEEEccccccCChh--hHHH
Q 004103 124 FSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKK---VQWIYMIVDEGHRLKNHE--CALA 198 (773)
Q Consensus 124 ~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~---~~~~~vIiDEaH~lkn~~--s~~~ 198 (773)
+..|+ ++.+.+..|.-+-+.+-... . ..+||||+|+..++.+...-.. -...++|+|||+||.... ..+.
T Consensus 275 laqFt-~I~~~L~vGGL~lk~QE~~L--R--s~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademn 349 (691)
T KOG0338|consen 275 LAQFT-DITVGLAVGGLDLKAQEAVL--R--SRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMN 349 (691)
T ss_pred HHhhc-cceeeeeecCccHHHHHHHH--h--hCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHH
Confidence 66666 57888888876655442221 1 6789999999999887554333 356689999999996433 2333
Q ss_pred HHHHcc-ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhh
Q 004103 199 KTISGY-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 277 (773)
Q Consensus 199 ~~l~~~-~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~ 277 (773)
.++... +.+..+|+|||- .....+|.++-
T Consensus 350 Eii~lcpk~RQTmLFSATM-teeVkdL~slS------------------------------------------------- 379 (691)
T KOG0338|consen 350 EIIRLCPKNRQTMLFSATM-TEEVKDLASLS------------------------------------------------- 379 (691)
T ss_pred HHHHhccccccceeehhhh-HHHHHHHHHhh-------------------------------------------------
Confidence 333332 344458999993 22233332210
Q ss_pred hhhhhhhHHhhcCCCceeEEEEecCCHH-HHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchh
Q 004103 278 ILRRKKDEVEKYLPGKSQVILKCDMSAW-QKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 356 (773)
Q Consensus 278 ~lRR~k~dv~~~LP~k~e~~v~~~~s~~-q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~ 356 (773)
|.. ...|+++.+.. -..+-+.+. ++| | .
T Consensus 380 ------------L~k--Pvrifvd~~~~~a~~LtQEFi----------------------RIR-----~------~---- 408 (691)
T KOG0338|consen 380 ------------LNK--PVRIFVDPNKDTAPKLTQEFI----------------------RIR-----P------K---- 408 (691)
T ss_pred ------------cCC--CeEEEeCCccccchhhhHHHh----------------------eec-----c------c----
Confidence 110 01111111000 000000000 000 0 0
Q ss_pred hHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEE
Q 004103 357 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 436 (773)
Q Consensus 357 ~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v 436 (773)
+..-+-.+|..++..+. ..++|||++....+..|.-.|...|+++.-+||+.++.+|.+.++.|++...+
T Consensus 409 -----re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid--- 478 (691)
T KOG0338|consen 409 -----REGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID--- 478 (691)
T ss_pred -----cccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC---
Confidence 01113334455555544 45899999999999999999999999999999999999999999999998888
Q ss_pred EEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHH
Q 004103 437 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVIL 500 (773)
Q Consensus 437 ~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~ 500 (773)
+||+|+++++|||+..+.+||+|+.|-+...|++|.||..|.|.. -+-+.|++++ |..|+
T Consensus 479 vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRa--GrsVtlvgE~--dRkll 538 (691)
T KOG0338|consen 479 VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRA--GRSVTLVGES--DRKLL 538 (691)
T ss_pred EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccC--cceEEEeccc--cHHHH
Confidence 899999999999999999999999999999999999999999854 3445577776 44444
No 55
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=2.4e-22 Score=226.42 Aligned_cols=306 Identities=19% Similarity=0.270 Sum_probs=229.1
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~ 132 (773)
..+||-|.++|..++ ++.++|.-.+||.||++..-..+ ++ ..|.+|||.|. +|+.+....+.... +.
T Consensus 16 ~~FR~gQ~evI~~~l----~g~d~lvvmPTGgGKSlCyQiPA--ll----~~G~TLVVSPLiSLM~DQV~~l~~~G--i~ 83 (590)
T COG0514 16 ASFRPGQQEIIDALL----SGKDTLVVMPTGGGKSLCYQIPA--LL----LEGLTLVVSPLISLMKDQVDQLEAAG--IR 83 (590)
T ss_pred cccCCCHHHHHHHHH----cCCcEEEEccCCCCcchHhhhHH--Hh----cCCCEEEECchHHHHHHHHHHHHHcC--ce
Confidence 478999999999998 57899999999999997642111 11 25799999999 88888999998875 34
Q ss_pred EEEecC--ChhHHHHHHHHHHhhcCCccEEEcCHHHHHHh--HHHHhhcCeeEEEEccccccCChh-------hHHHHHH
Q 004103 133 AVVYDG--RPDERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKNHE-------CALAKTI 201 (773)
Q Consensus 133 v~~~~g--~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaH~lkn~~-------s~~~~~l 201 (773)
+....+ +..++..+...+.. +.++++..++|.+... ...|...+..+++|||||++..++ ..+....
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~--g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~ 161 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKS--GQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLR 161 (590)
T ss_pred eehhhcccCHHHHHHHHHHHhc--CceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHH
Confidence 333333 55666666666544 6789999999999875 456778899999999999996543 3555566
Q ss_pred HccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhh
Q 004103 202 SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 281 (773)
Q Consensus 202 ~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR 281 (773)
..++...++.||||--.---.|+...|+.-.+.+|... |+.
T Consensus 162 ~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s------fdR--------------------------------- 202 (590)
T COG0514 162 AGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS------FDR--------------------------------- 202 (590)
T ss_pred hhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec------CCC---------------------------------
Confidence 77788899999999766666677666665544333211 110
Q ss_pred hhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHH
Q 004103 282 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 361 (773)
Q Consensus 282 ~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~ 361 (773)
|.....++.
T Consensus 203 ---------pNi~~~v~~-------------------------------------------------------------- 211 (590)
T COG0514 203 ---------PNLALKVVE-------------------------------------------------------------- 211 (590)
T ss_pred ---------chhhhhhhh--------------------------------------------------------------
Confidence 000000000
Q ss_pred hhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEec
Q 004103 362 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 441 (773)
Q Consensus 362 ~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt 441 (773)
...++.+.. -+.......+...||||..+...+.++..|...|+....+||+++.++|..+-++|..++.+ ++|+|
T Consensus 212 ~~~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~---iiVAT 287 (590)
T COG0514 212 KGEPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK---VMVAT 287 (590)
T ss_pred cccHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc---EEEEe
Confidence 000111111 11112233456789999999999999999999999999999999999999999999998877 89999
Q ss_pred ccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEE
Q 004103 442 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 487 (773)
Q Consensus 442 ~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~ 487 (773)
.|.|.|||-+++..|||||+|-+...|.|-+|||+|-|....+..+
T Consensus 288 ~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill 333 (590)
T COG0514 288 NAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILL 333 (590)
T ss_pred ccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEe
Confidence 9999999999999999999999999999999999999988776543
No 56
>PRK01172 ski2-like helicase; Provisional
Probab=99.90 E-value=5.7e-22 Score=236.28 Aligned_cols=312 Identities=19% Similarity=0.169 Sum_probs=199.1
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC-Cc
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SI 131 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p-~~ 131 (773)
.+|+|+|.+++..+. .+.+.+++.+||+|||+++..++...... .+++|+|+|. +++.|+.+++.++.. +.
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 479999999998764 57889999999999999987665554443 3578999998 888889999987653 46
Q ss_pred eEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCCh--hhHHHHHHHc---c
Q 004103 132 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTISG---Y 204 (773)
Q Consensus 132 ~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~--~s~~~~~l~~---~ 204 (773)
.+....|........ ....+|+|+|++.+...... ....++++|||||+|.+.+. +..+...+.. +
T Consensus 94 ~v~~~~G~~~~~~~~-------~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~ 166 (674)
T PRK01172 94 RVKISIGDYDDPPDF-------IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV 166 (674)
T ss_pred eEEEEeCCCCCChhh-------hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhc
Confidence 666666654322111 14579999999876432211 11225789999999998642 2222222222 2
Q ss_pred -ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhh
Q 004103 205 -QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 283 (773)
Q Consensus 205 -~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k 283 (773)
...+.++||||+- +..++ .+|++...-.. ..+|
T Consensus 167 ~~~~riI~lSATl~--n~~~l------------------a~wl~~~~~~~-------------------~~r~------- 200 (674)
T PRK01172 167 NPDARILALSATVS--NANEL------------------AQWLNASLIKS-------------------NFRP------- 200 (674)
T ss_pred CcCCcEEEEeCccC--CHHHH------------------HHHhCCCccCC-------------------CCCC-------
Confidence 3456799999962 23333 33333211000 0000
Q ss_pred hHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhh
Q 004103 284 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 363 (773)
Q Consensus 284 ~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~ 363 (773)
.|- ...++... ..+ ... ...
T Consensus 201 ------vpl-~~~i~~~~------~~~----------~~~-~~~------------------------------------ 220 (674)
T PRK01172 201 ------VPL-KLGILYRK------RLI----------LDG-YER------------------------------------ 220 (674)
T ss_pred ------CCe-EEEEEecC------eee----------ecc-ccc------------------------------------
Confidence 010 00011000 000 000 000
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC-------------------------CCeEEEEcCCCCHH
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-------------------------DFKFLRLDGSTKTE 418 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~-------------------------g~~~~~i~G~~~~~ 418 (773)
.+. .+..++......++++|||+..+...+.+...|... ...+..+||+++.+
T Consensus 221 -~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~ 298 (674)
T PRK01172 221 -SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNE 298 (674)
T ss_pred -ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHH
Confidence 000 012333444456789999999998877777766432 12366789999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCC---------CCChhhHHHHhhhhhhcCCcCeEEEEEE
Q 004103 419 ERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDS---------DWNPQMDQQAEDRAHRIGQKKEVRVFVL 489 (773)
Q Consensus 419 eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~---------~wNp~~~~Qa~gRa~RiGQ~k~V~V~rL 489 (773)
+|..+.+.|++|... +|++|.+++.|+|+++ .+||++|. +.++..+.|++|||+|.|.......+.+
T Consensus 299 eR~~ve~~f~~g~i~---VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 299 QRRFIEEMFRNRYIK---VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIY 374 (674)
T ss_pred HHHHHHHHHHcCCCe---EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEE
Confidence 999999999988765 7999999999999986 57777664 3577889999999999997666444444
Q ss_pred Ee
Q 004103 490 VS 491 (773)
Q Consensus 490 i~ 491 (773)
+.
T Consensus 375 ~~ 376 (674)
T PRK01172 375 AA 376 (674)
T ss_pred ec
Confidence 43
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.90 E-value=2.3e-21 Score=214.29 Aligned_cols=314 Identities=18% Similarity=0.185 Sum_probs=195.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCChhHH-----------H
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDER-----------K 144 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r-----------~ 144 (773)
.++..+||+|||.+++.++...... ...+++++|+|. +++.|+.+.+..++.. .+..++|..... .
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 4788999999999998887776653 445689999998 8899999999998754 344444433210 0
Q ss_pred HHHHHHHh---hcCCccEEEcCHHHHHHhHHH--------HhhcCeeEEEEccccccCChhh-HHHHHHHccc--cceEE
Q 004103 145 AMREEFFS---ERGRFNVLITHYDLIMRDRQY--------LKKVQWIYMIVDEGHRLKNHEC-ALAKTISGYQ--IQRRL 210 (773)
Q Consensus 145 ~~~~~~~~---~~~~~~VvItTye~l~~~~~~--------l~~~~~~~vIiDEaH~lkn~~s-~~~~~l~~~~--~~~rl 210 (773)
........ .....+++++|++.+...... +..+...+|||||+|.+..... .+...+..+. ....+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 11111101 012457999999988654222 2233447899999999975322 2333333332 34679
Q ss_pred EecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHHhhcC
Q 004103 211 LLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYL 290 (773)
Q Consensus 211 lLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~L 290 (773)
++|||+- ..+.++ +.-...... ....
T Consensus 160 ~~SATlp-~~l~~~---~~~~~~~~~--------------------------------------------------~~~~ 185 (358)
T TIGR01587 160 LMSATLP-KFLKEY---AEKIGYVEF--------------------------------------------------NEPL 185 (358)
T ss_pred EEecCch-HHHHHH---HhcCCCccc--------------------------------------------------ccCC
Confidence 9999963 111111 100000000 0000
Q ss_pred CCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHH
Q 004103 291 PGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELL 370 (773)
Q Consensus 291 P~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L 370 (773)
+..... ....|++..... ....|...+
T Consensus 186 ~~~~~~-------------------------------------------~~~~~~~~~~~~----------~~~~~~~~l 212 (358)
T TIGR01587 186 DLKEER-------------------------------------------RFERHRFIKIES----------DKVGEISSL 212 (358)
T ss_pred CCcccc-------------------------------------------ccccccceeecc----------ccccCHHHH
Confidence 000000 000011100000 012344555
Q ss_pred HHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCC--eEEEEcCCCCHHHHHH----HHHhhcCCCCCcEEEEEecccc
Q 004103 371 DRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDF--KFLRLDGSTKTEERGT----LLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 371 ~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~--~~~~i~G~~~~~eR~~----~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
.+++..+ ..+.++||||+....++.+...|...+. .+..+||.++..+|.. +++.|.++... +|+||+++
T Consensus 213 ~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~---ilvaT~~~ 288 (358)
T TIGR01587 213 ERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKF---VIVATQVI 288 (358)
T ss_pred HHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCe---EEEECcch
Confidence 5565443 3578999999999999999999988766 5999999999999976 48999886654 79999999
Q ss_pred cccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcC----eEEEEEEEeCC---CHHHHHHHHHHHH
Q 004103 445 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKK----EVRVFVLVSVG---SIEEVILERAKQK 506 (773)
Q Consensus 445 g~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k----~V~V~rLi~~~---tiEe~i~~~~~~K 506 (773)
++|||+ .+++||+++.+ +..++||+||++|.|.+. .|.||.....+ ..+..++++-.++
T Consensus 289 ~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~ 354 (358)
T TIGR01587 289 EASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQK 354 (358)
T ss_pred hceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHH
Confidence 999999 58999988766 889999999999999764 35555444443 3455555554443
No 58
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=5.5e-22 Score=204.54 Aligned_cols=312 Identities=18% Similarity=0.223 Sum_probs=222.0
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc--CC
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--PS 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~--p~ 130 (773)
.++.|.|..++..++ .|.+||-+.-||+|||.....-+..-+...+..--.||++|+ .+..|-.+.|.... -+
T Consensus 28 ~~pTpiQ~~cIpkIL----eGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~ 103 (442)
T KOG0340|consen 28 KKPTPIQQACIPKIL----EGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLN 103 (442)
T ss_pred CCCCchHhhhhHHHh----cccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhccccc
Confidence 478899999999999 699999999999999987433344433444444467999999 77778877776654 25
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH------HHhhcCeeEEEEccccccCChhh--HHHHHHH
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ------YLKKVQWIYMIVDEGHRLKNHEC--ALAKTIS 202 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~------~l~~~~~~~vIiDEaH~lkn~~s--~~~~~l~ 202 (773)
+++.++.|..+...+..... .+++|||+|++.+..... .+...+..++|+|||.++.+... .+.-...
T Consensus 104 lK~~vivGG~d~i~qa~~L~----~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e 179 (442)
T KOG0340|consen 104 LKVSVIVGGTDMIMQAAILS----DRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEE 179 (442)
T ss_pred ceEEEEEccHHHhhhhhhcc----cCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhc
Confidence 78888888776544333221 678999999998865422 12223567899999999965422 2222334
Q ss_pred ccccc-eEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhh
Q 004103 203 GYQIQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 281 (773)
Q Consensus 203 ~~~~~-~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR 281 (773)
.++.. ..+++|||- .++..+++. .+....
T Consensus 180 ~lP~~RQtLlfSATi-td~i~ql~~---------------------~~i~k~---------------------------- 209 (442)
T KOG0340|consen 180 CLPKPRQTLLFSATI-TDTIKQLFG---------------------CPITKS---------------------------- 209 (442)
T ss_pred cCCCccceEEEEeeh-hhHHHHhhc---------------------CCcccc----------------------------
Confidence 44433 669999983 333333211 110000
Q ss_pred hhhHHhhcCCCceeEEEEe-cCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHH
Q 004103 282 KKDEVEKYLPGKSQVILKC-DMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEI 360 (773)
Q Consensus 282 ~k~dv~~~LP~k~e~~v~~-~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l 360 (773)
.-..+.. +-.+.-..+|+. |++
T Consensus 210 ------------~a~~~e~~~~vstvetL~q~---------------------------------yI~------------ 232 (442)
T KOG0340|consen 210 ------------IAFELEVIDGVSTVETLYQG---------------------------------YIL------------ 232 (442)
T ss_pred ------------cceEEeccCCCCchhhhhhh---------------------------------eee------------
Confidence 0000000 000000011110 111
Q ss_pred HhhcchHHHHHHHHHHhhh-cCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEE
Q 004103 361 IRASGKFELLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 439 (773)
Q Consensus 361 ~~~s~K~~~L~~ll~~l~~-~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~Ll 439 (773)
+....|-.+|..+|..... ....++||+|.+...++|...|...++.+..+|+.+++.+|..++.+|+++... +|+
T Consensus 233 ~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~---ili 309 (442)
T KOG0340|consen 233 VSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAAR---ILI 309 (442)
T ss_pred cchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCcc---EEE
Confidence 1335677888899988876 677899999999999999999999999999999999999999999999987766 899
Q ss_pred ecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCe
Q 004103 440 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 483 (773)
Q Consensus 440 St~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~ 483 (773)
+|+++++|||+++++.||+||.|-.|..|++|.||..|.|..-.
T Consensus 310 aTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 310 ATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred EechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 99999999999999999999999999999999999999998755
No 59
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.89 E-value=3.8e-22 Score=214.39 Aligned_cols=342 Identities=20% Similarity=0.258 Sum_probs=219.5
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHH-HHHHHHHHh-------cCCCCC-EEEEeCC-cchHHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLEN-------KGVTGP-HVIVAPK-AVLPNWINE 123 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai-ali~~l~~~-------~~~~gp-~LIVvP~-sll~qW~~E 123 (773)
..+.|.|..++.-++ ++.+.|...|+|+|||...+ -++.+.... ...-|| .+|++|+ .|..|...|
T Consensus 266 ~eptpIqR~aipl~l----Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeE 341 (673)
T KOG0333|consen 266 KEPTPIQRQAIPLGL----QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEE 341 (673)
T ss_pred CCCchHHHhhccchh----ccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHH
Confidence 378899999998666 58888999999999996533 333322221 112234 5888999 666777788
Q ss_pred HHhhcC--CceEEEecCCh-hHHHHHHHHHHhhcCCccEEEcCHHHHHHhH--HHHhhcCeeEEEEccccccCC--hhhH
Q 004103 124 FSTWAP--SIAAVVYDGRP-DERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKN--HECA 196 (773)
Q Consensus 124 ~~k~~p--~~~v~~~~g~~-~~r~~~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaH~lkn--~~s~ 196 (773)
-.+|.- ++.++.+.|.. .+-.-++ -...++++|.|+..+.... ..|-.-+..+||+|||.++-. ..-.
T Consensus 342 t~kf~~~lg~r~vsvigg~s~EEq~fq-----ls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~d 416 (673)
T KOG0333|consen 342 TNKFGKPLGIRTVSVIGGLSFEEQGFQ-----LSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPD 416 (673)
T ss_pred HHHhcccccceEEEEecccchhhhhhh-----hhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHH
Confidence 777762 35555554443 3222111 1257899999999998753 345555788999999999854 2233
Q ss_pred HHHHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhh
Q 004103 197 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 276 (773)
Q Consensus 197 ~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p 276 (773)
..+.|..+ |..|.- | ..+++..|- ++ ...
T Consensus 417 v~~iL~~m-----------Pssn~k-----------~----~tde~~~~~----------------------~~---~~~ 445 (673)
T KOG0333|consen 417 VQKILEQM-----------PSSNAK-----------P----DTDEKEGEE----------------------RV---RKN 445 (673)
T ss_pred HHHHHHhC-----------CccccC-----------C----CccchhhHH----------------------HH---Hhh
Confidence 44444333 211110 0 000110000 00 000
Q ss_pred hhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchh
Q 004103 277 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 356 (773)
Q Consensus 277 ~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~ 356 (773)
|.-. ---.........|+|.-..+-...+...........++. +|.+-..
T Consensus 446 ~~~~---------k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~---------------~~rveQ~------ 495 (673)
T KOG0333|consen 446 FSSS---------KKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKP---------------TPRVEQK------ 495 (673)
T ss_pred cccc---------cceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCC---------------ccchheE------
Confidence 0000 000122334444554444443333322221111111111 0100000
Q ss_pred hHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEE
Q 004103 357 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 436 (773)
Q Consensus 357 ~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v 436 (773)
-.++..+.|+..|.++|... ...++|||.+....+|.|++.|...||+++++||+-++++|+.++..|+++..+
T Consensus 496 -v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d--- 569 (673)
T KOG0333|consen 496 -VEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGD--- 569 (673)
T ss_pred -EEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC---
Confidence 01124566888899999886 456999999999999999999999999999999999999999999999998887
Q ss_pred EEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 437 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 437 ~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
+|++|+++|+|||++++.+||+||..-+...|.+||||.+|.|+.-.+ .-|+++.
T Consensus 570 IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gta--iSflt~~ 624 (673)
T KOG0333|consen 570 ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTA--ISFLTPA 624 (673)
T ss_pred EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCcee--EEEeccc
Confidence 899999999999999999999999999999999999999999987654 3445543
No 60
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=3e-22 Score=218.12 Aligned_cols=313 Identities=20% Similarity=0.257 Sum_probs=217.6
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHH-HHHHHHHHhcC---------CCCCEEEEeCC-cchHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENKG---------VTGPHVIVAPK-AVLPNWIN 122 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai-ali~~l~~~~~---------~~gp~LIVvP~-sll~qW~~ 122 (773)
..+.|+|..++.-+. .+++.+.|.+||+|||...+ -++.++++... .....||++|+ .|+.|-.+
T Consensus 95 ~~ptpvQk~sip~i~----~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIIS----GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred cCCCcceeeccceee----cCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 478999999997666 68888999999999999864 55666666532 23467999999 89999999
Q ss_pred HHHhhcC--CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCC---hhh
Q 004103 123 EFSTWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKN---HEC 195 (773)
Q Consensus 123 E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn---~~s 195 (773)
|..++.. .+..++..|..+.+.+.+... ..++++++|+..+..-.. .+..-...++|+|||.+|.. ...
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~~~----~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p 246 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRFIK----RGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEP 246 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhhhc----cCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccc
Confidence 9999873 455555555555444444332 789999999998876422 23333445999999999854 222
Q ss_pred HHHHHHHcc-----ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHH
Q 004103 196 ALAKTISGY-----QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRL 270 (773)
Q Consensus 196 ~~~~~l~~~-----~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L 270 (773)
.+.+.+... .....++.|||- ...+..
T Consensus 247 ~Ir~iv~~~~~~~~~~~qt~mFSAtf-p~~iq~----------------------------------------------- 278 (482)
T KOG0335|consen 247 QIRKIVEQLGMPPKNNRQTLLFSATF-PKEIQR----------------------------------------------- 278 (482)
T ss_pred cHHHHhcccCCCCccceeEEEEeccC-Chhhhh-----------------------------------------------
Confidence 334444222 234446667762 111111
Q ss_pred Hhhhhhhhhh----hhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCC
Q 004103 271 HHVIRPFILR----RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPY 346 (773)
Q Consensus 271 ~~~L~p~~lR----R~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~ 346 (773)
+...|+.- -....+..........+++|.
T Consensus 279 --l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~--------------------------------------------- 311 (482)
T KOG0335|consen 279 --LAADFLKDNYIFLAVGRVGSTSENITQKILFVN--------------------------------------------- 311 (482)
T ss_pred --hHHHHhhccceEEEEeeeccccccceeEeeeec---------------------------------------------
Confidence 11111100 000111111222233333333
Q ss_pred cccccccchhhHHHHhhcchHHHHHHHHHHhhh-------cCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHH
Q 004103 347 LFVGEYNMWRKEEIIRASGKFELLDRLLPKLRK-------SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEE 419 (773)
Q Consensus 347 l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~-------~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~e 419 (773)
...|...|.++|..... ..++++||++..+.++.++.+|...++++..|||..++.+
T Consensus 312 ----------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~e 375 (482)
T KOG0335|consen 312 ----------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIE 375 (482)
T ss_pred ----------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhH
Confidence 12233444444443321 1259999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEE
Q 004103 420 RGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 488 (773)
Q Consensus 420 R~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~r 488 (773)
|.++++.|.++..+ +||+|.++++|||++.+++||+||.|-+...|++|+||++|.|+.--...+.
T Consensus 376 r~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 376 REQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred HHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEe
Confidence 99999999999888 8999999999999999999999999999999999999999999986655443
No 61
>PRK00254 ski2-like helicase; Provisional
Probab=99.89 E-value=3.2e-21 Score=231.01 Aligned_cols=317 Identities=20% Similarity=0.182 Sum_probs=201.6
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHH-HHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC-C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-S 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai-ali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p-~ 130 (773)
.+|+|+|.+++...+ ..+.+.+++.+||+|||+.+. +++..+... .+++|+|+|. .++.|+..+|.+|.. +
T Consensus 22 ~~l~~~Q~~ai~~~~---~~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 22 EELYPPQAEALKSGV---LEGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCHHHHHHHHHHH---hCCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 379999999997422 268899999999999999984 444444432 3589999999 888889988887653 5
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH----HHhhcCeeEEEEccccccCC--hhhHHHHHHHcc
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ----YLKKVQWIYMIVDEGHRLKN--HECALAKTISGY 204 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~----~l~~~~~~~vIiDEaH~lkn--~~s~~~~~l~~~ 204 (773)
..+..+.|........ ...++|+|+|++.+..... .+ .+.++|||||+|.+.. .+..+...+..+
T Consensus 96 ~~v~~~~Gd~~~~~~~-------~~~~~IiV~Tpe~~~~ll~~~~~~l--~~l~lvViDE~H~l~~~~rg~~le~il~~l 166 (720)
T PRK00254 96 LRVAMTTGDYDSTDEW-------LGKYDIIIATAEKFDSLLRHGSSWI--KDVKLVVADEIHLIGSYDRGATLEMILTHM 166 (720)
T ss_pred CEEEEEeCCCCCchhh-------hccCCEEEEcHHHHHHHHhCCchhh--hcCCEEEEcCcCccCCccchHHHHHHHHhc
Confidence 7777787765432211 1567999999998754322 22 2568999999999854 344444555554
Q ss_pred -ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhh
Q 004103 205 -QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 283 (773)
Q Consensus 205 -~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k 283 (773)
...+.++||||+- +..++.. |++..... ...+|.-++
T Consensus 167 ~~~~qiI~lSATl~--n~~~la~------------------wl~~~~~~-------------------~~~rpv~l~--- 204 (720)
T PRK00254 167 LGRAQILGLSATVG--NAEELAE------------------WLNAELVV-------------------SDWRPVKLR--- 204 (720)
T ss_pred CcCCcEEEEEccCC--CHHHHHH------------------HhCCcccc-------------------CCCCCCcce---
Confidence 3567899999962 3444433 32211000 000110000
Q ss_pred hHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhh
Q 004103 284 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 363 (773)
Q Consensus 284 ~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~ 363 (773)
..+.... ....... ....
T Consensus 205 ------------~~~~~~~---------------~~~~~~~--~~~~--------------------------------- 222 (720)
T PRK00254 205 ------------KGVFYQG---------------FLFWEDG--KIER--------------------------------- 222 (720)
T ss_pred ------------eeEecCC---------------eeeccCc--chhc---------------------------------
Confidence 0000000 0000000 0000
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHh---------------------------------CCCeEEE
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL---------------------------------NDFKFLR 410 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~---------------------------------~g~~~~~ 410 (773)
....+..++......+.++||||+.+..++.++..|.. ....+..
T Consensus 223 --~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~ 300 (720)
T PRK00254 223 --FPNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAF 300 (720)
T ss_pred --chHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEE
Confidence 00011122222333578999999988766554433321 1235788
Q ss_pred EcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEE-------eCCCC-ChhhHHHHhhhhhhcCCcC
Q 004103 411 LDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII-------FDSDW-NPQMDQQAEDRAHRIGQKK 482 (773)
Q Consensus 411 i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~-------~D~~w-Np~~~~Qa~gRa~RiGQ~k 482 (773)
+||+++.++|..+.+.|++|... +|++|.+++.|+|+++.++||. ++.+. ....+.|++|||+|.|...
T Consensus 301 hHagl~~~eR~~ve~~F~~G~i~---VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~ 377 (720)
T PRK00254 301 HHAGLGRTERVLIEDAFREGLIK---VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDE 377 (720)
T ss_pred eCCCCCHHHHHHHHHHHHCCCCe---EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCC
Confidence 99999999999999999998766 8999999999999998888874 33333 3457899999999999877
Q ss_pred eEEEEEEEeCCC
Q 004103 483 EVRVFVLVSVGS 494 (773)
Q Consensus 483 ~V~V~rLi~~~t 494 (773)
.-.++.++..+.
T Consensus 378 ~G~~ii~~~~~~ 389 (720)
T PRK00254 378 VGEAIIVATTEE 389 (720)
T ss_pred CceEEEEecCcc
Confidence 766776766543
No 62
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=8.7e-22 Score=209.55 Aligned_cols=315 Identities=20% Similarity=0.281 Sum_probs=222.1
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC---CCC--CEEEEeCC-cchHHH---HHHH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG---VTG--PHVIVAPK-AVLPNW---INEF 124 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~---~~g--p~LIVvP~-sll~qW---~~E~ 124 (773)
..+.|-|..++..++ ++....+-..||+|||+..+..+...+..+. ..+ -.|||+|+ .|..|. ...|
T Consensus 27 ~~mTpVQa~tIPlll----~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLL----KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHHh----cCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 589999999999888 5888888899999999998777766663221 122 35999999 555554 3445
Q ss_pred HhhcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH----HhhcCeeEEEEccccccCC--hhhHHH
Q 004103 125 STWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY----LKKVQWIYMIVDEGHRLKN--HECALA 198 (773)
Q Consensus 125 ~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~----l~~~~~~~vIiDEaH~lkn--~~s~~~ 198 (773)
...+|++++..+.|+..-...+.. +.. ...+|+|.|++.+..-... +.-....++|+|||+++.. ....+.
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~~-fke--e~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n 179 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIKT-FKE--EGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVN 179 (567)
T ss_pred HHhhhccceEEEecCccHHHHHHH-HHH--hCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHH
Confidence 556688999999888655444432 212 5678999999988654332 4434677999999999965 445667
Q ss_pred HHHHccccceEEE-ecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhh
Q 004103 199 KTISGYQIQRRLL-LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 277 (773)
Q Consensus 199 ~~l~~~~~~~rll-LTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~ 277 (773)
.+|..++.++|-+ .|||-.+. ..+| . ..
T Consensus 180 ~ILs~LPKQRRTGLFSATq~~~-v~dL---~-----------------------------------------------ra 208 (567)
T KOG0345|consen 180 TILSFLPKQRRTGLFSATQTQE-VEDL---A-----------------------------------------------RA 208 (567)
T ss_pred HHHHhcccccccccccchhhHH-HHHH---H-----------------------------------------------Hh
Confidence 7778888777764 57873110 1111 0 00
Q ss_pred hhhhhhhHHhhcCCCceeEEEEecC---CHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccc
Q 004103 278 ILRRKKDEVEKYLPGKSQVILKCDM---SAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNM 354 (773)
Q Consensus 278 ~lRR~k~dv~~~LP~k~e~~v~~~~---s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~ 354 (773)
-||. .....+...- +|. ++.+. |+
T Consensus 209 GLRN-----------pv~V~V~~k~~~~tPS------------------------~L~~~-----------Y~------- 235 (567)
T KOG0345|consen 209 GLRN-----------PVRVSVKEKSKSATPS------------------------SLALE-----------YL------- 235 (567)
T ss_pred hccC-----------ceeeeecccccccCch------------------------hhcce-----------ee-------
Confidence 1111 1111111000 000 00000 00
Q ss_pred hhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHh--CCCeEEEEcCCCCHHHHHHHHHhhcCCCC
Q 004103 355 WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL--NDFKFLRLDGSTKTEERGTLLKQFNAPDS 432 (773)
Q Consensus 355 ~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~--~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~ 432 (773)
.+.+.-|+..|..+|.. ...+|+|||.......++....|.. .+.+++.+||.++...|..++..|.+...
T Consensus 236 -----v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~ 308 (567)
T KOG0345|consen 236 -----VCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSN 308 (567)
T ss_pred -----EecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccC
Confidence 01334588888888877 4567999999999999988888764 47899999999999999999999988444
Q ss_pred CcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEE
Q 004103 433 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVL 489 (773)
Q Consensus 433 ~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rL 489 (773)
. +|+||+++++|||++++|.||.||||-+|..+.+|.||+.|.|..-...|+.+
T Consensus 309 ~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 309 G---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred c---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEec
Confidence 4 79999999999999999999999999999999999999999998876655443
No 63
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.8e-22 Score=201.96 Aligned_cols=314 Identities=17% Similarity=0.232 Sum_probs=224.0
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHH-HHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--C
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQ-TIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 130 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~-aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~ 130 (773)
++...|..++..++ .+.+.|.....|+|||.+ +|+++..+-- ....-.+||+.|+ .+..|-..-+..... +
T Consensus 49 kPS~IQqrAi~~Il----kGrdViaQaqSGTGKTa~~si~vlq~~d~-~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn 123 (400)
T KOG0328|consen 49 KPSAIQQRAIPQIL----KGRDVIAQAQSGTGKTATFSISVLQSLDI-SVRETQALILSPTRELAVQIQKVILALGDYMN 123 (400)
T ss_pred CchHHHhhhhhhhh----cccceEEEecCCCCceEEEEeeeeeeccc-ccceeeEEEecChHHHHHHHHHHHHHhccccc
Confidence 56667889998888 588899999999999987 4555433321 1222368999999 666777776766653 4
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHh--HHHHhhcCeeEEEEccccccCC--hhhHHHHHHHccc-
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKN--HECALAKTISGYQ- 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaH~lkn--~~s~~~~~l~~~~- 205 (773)
+.+..+.|.+.-...++..- -..+||..|+..+..- ...|......++|+|||+.+.| ...+.+...+.++
T Consensus 124 vq~hacigg~n~gedikkld----~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~ 199 (400)
T KOG0328|consen 124 VQCHACIGGKNLGEDIKKLD----YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPP 199 (400)
T ss_pred ceEEEEecCCccchhhhhhc----ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCC
Confidence 56666666665444443322 3568999999988664 3446666789999999999965 4456777777775
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhH
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 285 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~d 285 (773)
....+++|||-- .|+..+.++..+
T Consensus 200 ~~Qvv~~SATlp----~eilemt~kfmt---------------------------------------------------- 223 (400)
T KOG0328|consen 200 GAQVVLVSATLP----HEILEMTEKFMT---------------------------------------------------- 223 (400)
T ss_pred CceEEEEeccCc----HHHHHHHHHhcC----------------------------------------------------
Confidence 678899999942 233333222222
Q ss_pred HhhcCCCceeEEEEe-cCCHH-HHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhh
Q 004103 286 VEKYLPGKSQVILKC-DMSAW-QKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 363 (773)
Q Consensus 286 v~~~LP~k~e~~v~~-~~s~~-q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~ 363 (773)
+.....+.- +++.+ -+++|-.. + ..
T Consensus 224 ------dpvrilvkrdeltlEgIKqf~v~v-------------------------------------e----------~E 250 (400)
T KOG0328|consen 224 ------DPVRILVKRDELTLEGIKQFFVAV-------------------------------------E----------KE 250 (400)
T ss_pred ------CceeEEEecCCCchhhhhhheeee-------------------------------------c----------hh
Confidence 211111111 11110 01111000 0 11
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 443 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a 443 (773)
.-|+..|..+-..+. -...+|||+.....|+|.+.+....+.+..+||.++.++|.+++++|+++.+. +|++|++
T Consensus 251 ewKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Sr---vLitTDV 325 (400)
T KOG0328|consen 251 EWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSR---VLITTDV 325 (400)
T ss_pred hhhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCce---EEEEech
Confidence 226677777766653 34899999999999999999999999999999999999999999999999887 8999999
Q ss_pred ccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 444 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 444 gg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
-++|+|.|.++.||+||+|-|+..|++|+||.+|.|.+- .+..|+..+
T Consensus 326 waRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~ 373 (400)
T KOG0328|consen 326 WARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSD 373 (400)
T ss_pred hhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHH
Confidence 999999999999999999999999999999999999764 344566554
No 64
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.88 E-value=1.8e-21 Score=208.58 Aligned_cols=320 Identities=20% Similarity=0.289 Sum_probs=214.5
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC----CCCCEEEEeCC-cchHHHHHHHH---
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG----VTGPHVIVAPK-AVLPNWINEFS--- 125 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~----~~gp~LIVvP~-sll~qW~~E~~--- 125 (773)
.++.+-|...+.-++ .+.+.+.+.-||+|||+..+..+..+..... ..-.+|||||+ .+..|-..|.+
T Consensus 103 ~~MT~VQ~~ti~pll----~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll 178 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLL----EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELL 178 (543)
T ss_pred cchhHHHHhhcCccC----CCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHH
Confidence 378888888887666 5778899999999999987655544444321 11246999999 67777666554
Q ss_pred hhcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhc---CeeEEEEccccccCCh--hhHHHHH
Q 004103 126 TWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKV---QWIYMIVDEGHRLKNH--ECALAKT 200 (773)
Q Consensus 126 k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~---~~~~vIiDEaH~lkn~--~s~~~~~ 200 (773)
++.+...+.+..|...-+..... +. ...+++|+|+..+..+...-..+ ..+++|+|||+|+... .-.+-++
T Consensus 179 ~~h~~~~v~~viGG~~~~~e~~k-l~---k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~I 254 (543)
T KOG0342|consen 179 KYHESITVGIVIGGNNFSVEADK-LV---KGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQI 254 (543)
T ss_pred hhCCCcceEEEeCCccchHHHHH-hh---ccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHH
Confidence 55566666666665443332222 11 47899999999998764432221 2378999999999543 3345566
Q ss_pred HHccc-cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhh
Q 004103 201 ISGYQ-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 279 (773)
Q Consensus 201 l~~~~-~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~l 279 (773)
+..++ ....+|.|||-- ....++ ..+ .+
T Consensus 255 i~~lpk~rqt~LFSAT~~-~kV~~l----------------------------------------------~~~----~L 283 (543)
T KOG0342|consen 255 IKILPKQRQTLLFSATQP-SKVKDL----------------------------------------------ARG----AL 283 (543)
T ss_pred HHhccccceeeEeeCCCc-HHHHHH----------------------------------------------HHH----hh
Confidence 66664 345588899831 111111 000 00
Q ss_pred hhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHH
Q 004103 280 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEE 359 (773)
Q Consensus 280 RR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~ 359 (773)
.+ ....+.|. +. ...... ..+.+- |+
T Consensus 284 ~~------------d~~~v~~~--------------------d~---~~~~Th---e~l~Qg----yv------------ 309 (543)
T KOG0342|consen 284 KR------------DPVFVNVD--------------------DG---GERETH---ERLEQG----YV------------ 309 (543)
T ss_pred cC------------CceEeecC--------------------CC---CCcchh---hcccce----EE------------
Confidence 00 00001100 00 000000 001110 00
Q ss_pred HHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEE
Q 004103 360 IIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 439 (773)
Q Consensus 360 l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~Ll 439 (773)
+.....++-++..+|++.... .|+||||....+..++.+.|.+..+++..|||..++..|..+..+|...++. +|+
T Consensus 310 v~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg---IL~ 385 (543)
T KOG0342|consen 310 VAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG---ILV 385 (543)
T ss_pred eccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc---eEE
Confidence 011234567777777776543 8999999999999999999999999999999999999999999999987776 899
Q ss_pred ecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeC
Q 004103 440 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 492 (773)
Q Consensus 440 St~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~ 492 (773)
||+++++|+|+++++-||-||+|-+|.+|++|+||.+|-|.+- .-+.|+++
T Consensus 386 cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G--~alL~l~p 436 (543)
T KOG0342|consen 386 CTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEG--KALLLLAP 436 (543)
T ss_pred ecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCc--eEEEEeCh
Confidence 9999999999999999999999999999999999999966543 34445554
No 65
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=7.3e-22 Score=211.30 Aligned_cols=353 Identities=17% Similarity=0.217 Sum_probs=216.1
Q ss_pred CchHHHHHHHHHHHHhhc-----CCCCeEEecCCCCCHHHHHHHHHHHHHHhc-CCCCCEEEEeCC-cchHHHHHHHHhh
Q 004103 55 ELRAYQLEGLQWMLSLFN-----NNLNGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~-----~~~~gILademGlGKTi~aiali~~l~~~~-~~~gp~LIVvP~-sll~qW~~E~~k~ 127 (773)
.+.|-|...+.|++.-.. .++..+++.+||+|||+....-|..++..+ -.+-++|||+|. .|..|-+.+|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 688999999999976544 233457899999999999544444444443 334478999999 7778899999999
Q ss_pred cCC--ceEEEecCChhHHHHHHHHHHh-hcCCccEEEcCHHHHHHhHHH---HhhcCeeEEEEccccccCChhh--HHHH
Q 004103 128 APS--IAAVVYDGRPDERKAMREEFFS-ERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKNHEC--ALAK 199 (773)
Q Consensus 128 ~p~--~~v~~~~g~~~~r~~~~~~~~~-~~~~~~VvItTye~l~~~~~~---l~~~~~~~vIiDEaH~lkn~~s--~~~~ 199 (773)
+++ +.|....|...-+....+..-. +....||+|+|+..+..+... +..-+..++|||||+||.+... .+-.
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~ 318 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDT 318 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHH
Confidence 975 5566677766655554433221 124569999999999987653 2333567999999999976433 2222
Q ss_pred HHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhh
Q 004103 200 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 279 (773)
Q Consensus 200 ~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~l 279 (773)
.+...+...++.+. .++..+..-.-|..+.... .-+... ...|.+++.+-.+
T Consensus 319 v~~~~~~~k~~~~~--------~nii~~~~~~~pt~~~e~~---t~~~~~-----------------~~~l~kL~~satL 370 (620)
T KOG0350|consen 319 VMSLCKTMKRVACL--------DNIIRQRQAPQPTVLSELL---TKLGKL-----------------YPPLWKLVFSATL 370 (620)
T ss_pred HHHHhCCchhhcCh--------hhhhhhcccCCchhhHHHH---hhcCCc-----------------CchhHhhhcchhh
Confidence 33332222222221 1221111111111111100 000000 0111122222222
Q ss_pred hhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccc---cchh
Q 004103 280 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY---NMWR 356 (773)
Q Consensus 280 RR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~---~~~~ 356 (773)
.+....+.. | -.++|-++.-.. ..+.
T Consensus 371 sqdP~Kl~~-l--------------------------------------------------~l~~Prl~~v~~~~~~rys 399 (620)
T KOG0350|consen 371 SQDPSKLKD-L--------------------------------------------------TLHIPRLFHVSKPLIGRYS 399 (620)
T ss_pred hcChHHHhh-h--------------------------------------------------hcCCCceEEeecccceeee
Confidence 221111110 0 011121111100 0000
Q ss_pred h-----HHHHhhc--chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHH
Q 004103 357 K-----EEIIRAS--GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLK 425 (773)
Q Consensus 357 ~-----~~l~~~s--~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~i~G~~~~~eR~~~i~ 425 (773)
. ...+-.+ -|...+..++.. ....++|+|+...+....+...|. .-.+++..++|+.+.+.|.+.+.
T Consensus 400 lp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~ 477 (620)
T KOG0350|consen 400 LPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLE 477 (620)
T ss_pred cChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHH
Confidence 0 0000111 233445555544 346799999999988777777665 34667777999999999999999
Q ss_pred hhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 426 QFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 426 ~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
+|+.|+.. +||++++.++|+|+.+++.||+||+|-....|++|+||..|.||.-- +|.|+...
T Consensus 478 ~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~--a~tll~~~ 540 (620)
T KOG0350|consen 478 KFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGY--AITLLDKH 540 (620)
T ss_pred HHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCce--EEEeeccc
Confidence 99999987 89999999999999999999999999999999999999999998754 45555543
No 66
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=1.5e-20 Score=202.40 Aligned_cols=330 Identities=20% Similarity=0.286 Sum_probs=201.1
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc-----CCCCC-EEEEeCC-cchHHHHHHHHhh
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-----GVTGP-HVIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~-----~~~gp-~LIVvP~-sll~qW~~E~~k~ 127 (773)
.+...|..+|.-++ ++...++-..||+|||+..+.-+...+... ...|+ .||+||+ .|+.|-.+-+.+.
T Consensus 159 ~pTsVQkq~IP~lL----~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 159 APTSVQKQAIPVLL----EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred ccchHhhcchhhhh----cCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 45556777777777 588889999999999999766665555432 22345 4999999 8888888888876
Q ss_pred cCCce----EEEecCCh--hHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhc---CeeEEEEccccccCC--hhhH
Q 004103 128 APSIA----AVVYDGRP--DERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKV---QWIYMIVDEGHRLKN--HECA 196 (773)
Q Consensus 128 ~p~~~----v~~~~g~~--~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~---~~~~vIiDEaH~lkn--~~s~ 196 (773)
..... .+++.|.+ .+...++ .+.+|+|.|+..+..+...-..+ ...+||+|||+++.. ..-.
T Consensus 235 l~~~hWIVPg~lmGGEkkKSEKARLR-------KGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekd 307 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSEKARLR-------KGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKD 307 (708)
T ss_pred hcCceEEeeceeecccccccHHHHHh-------cCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhh
Confidence 64333 33444533 2333333 57899999999998875543333 456899999999843 3333
Q ss_pred HHHHHHcccc--------------ceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHH
Q 004103 197 LAKTISGYQI--------------QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEE 262 (773)
Q Consensus 197 ~~~~l~~~~~--------------~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~ 262 (773)
+.+++..+.. ...+|||||-- ..
T Consensus 308 it~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLt-d~------------------------------------------ 344 (708)
T KOG0348|consen 308 ITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLT-DG------------------------------------------ 344 (708)
T ss_pred HHHHHHHHhhccchhcccccccHHHHhHhhhhhhH-HH------------------------------------------
Confidence 4444443311 12355666521 00
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHh
Q 004103 263 QLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCC 342 (773)
Q Consensus 263 ~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~ 342 (773)
+.+|..+- |-+ ...|..+-+..|.. . +. ..+.-.|
T Consensus 345 ----V~rLa~~s---------------LkD--pv~I~ld~s~~~~~--p---------------~~-------~a~~ev~ 379 (708)
T KOG0348|consen 345 ----VNRLADLS---------------LKD--PVYISLDKSHSQLN--P---------------KD-------KAVQEVD 379 (708)
T ss_pred ----HHHHhhcc---------------ccC--ceeeeccchhhhcC--c---------------ch-------hhhhhcC
Confidence 11111100 100 01111110000000 0 00 0001111
Q ss_pred CCCCcccc---cccchhhHHHHhhcchH--HHHHHHHHHhh--hcCCcEEEEeecHHHHHHHHHHHHh------------
Q 004103 343 NHPYLFVG---EYNMWRKEEIIRASGKF--ELLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIYLKL------------ 403 (773)
Q Consensus 343 ~hP~l~~~---~~~~~~~~~l~~~s~K~--~~L~~ll~~l~--~~g~kvLIFsq~~~~ld~L~~~L~~------------ 403 (773)
.-|+-... ..+..-.+..+...+|+ -.|..+|.+.. ....|+|||....++++.=.+.|..
T Consensus 380 ~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~ 459 (708)
T KOG0348|consen 380 DGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGA 459 (708)
T ss_pred CcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCC
Confidence 11111100 00000011112234444 34445554432 2356899999888877766655532
Q ss_pred ----------CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhh
Q 004103 404 ----------NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAED 473 (773)
Q Consensus 404 ----------~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~g 473 (773)
.+.++.++||+|++++|..+++.|...... +|+||+++++||||+.++.||-||+|.++..|++|+|
T Consensus 460 ~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~---VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvG 536 (708)
T KOG0348|consen 460 PDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA---VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVG 536 (708)
T ss_pred cccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce---EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhh
Confidence 145699999999999999999999875543 8999999999999999999999999999999999999
Q ss_pred hhhhcCCcCeEEE
Q 004103 474 RAHRIGQKKEVRV 486 (773)
Q Consensus 474 Ra~RiGQ~k~V~V 486 (773)
|..|+|-+-.-..
T Consensus 537 RTARaG~kG~alL 549 (708)
T KOG0348|consen 537 RTARAGEKGEALL 549 (708)
T ss_pred hhhhccCCCceEE
Confidence 9999998876543
No 67
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=220.19 Aligned_cols=328 Identities=19% Similarity=0.151 Sum_probs=218.9
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHH-HHHHHHhc-CCC---CCEEEEeCC-cchHHHHHHHHhh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLENK-GVT---GPHVIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aial-i~~l~~~~-~~~---gp~LIVvP~-sll~qW~~E~~k~ 127 (773)
.+|+|+|..++..+. .|.|.++..+||+|||..|+.. +..+.... +.. -.+|.|.|. .|-..-...+..|
T Consensus 21 ~~~t~~Q~~a~~~i~----~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIH----SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHh----CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 589999999998877 6999999999999999998644 45555542 111 247999998 4444466667666
Q ss_pred c--CCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHh------HHHHhhcCeeEEEEccccccCC--hhhHH
Q 004103 128 A--PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD------RQYLKKVQWIYMIVDEGHRLKN--HECAL 197 (773)
Q Consensus 128 ~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~------~~~l~~~~~~~vIiDEaH~lkn--~~s~~ 197 (773)
. -++.+-+-+|........+. ....+||+|||+|++.-. ...|. +..+|||||.|.+.+ .++.+
T Consensus 97 ~~~~G~~v~vRhGDT~~~er~r~----~~~PPdILiTTPEsL~lll~~~~~r~~l~--~vr~VIVDEiHel~~sKRG~~L 170 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEKQKM----LKNPPHILITTPESLAILLNSPKFRELLR--DVRYVIVDEIHALAESKRGVQL 170 (814)
T ss_pred HHHcCCccceecCCCChHHhhhc----cCCCCcEEEeChhHHHHHhcCHHHHHHhc--CCcEEEeehhhhhhccccchhh
Confidence 5 25666777775443222111 126789999999998642 23343 456799999999965 45566
Q ss_pred HHHHHcc---c-cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhh
Q 004103 198 AKTISGY---Q-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 273 (773)
Q Consensus 198 ~~~l~~~---~-~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~ 273 (773)
+-.+.++ . .-.|++||||- .++.++-.. |.+.--
T Consensus 171 sl~LeRL~~l~~~~qRIGLSATV--~~~~~varf---L~g~~~------------------------------------- 208 (814)
T COG1201 171 ALSLERLRELAGDFQRIGLSATV--GPPEEVAKF---LVGFGD------------------------------------- 208 (814)
T ss_pred hhhHHHHHhhCcccEEEeehhcc--CCHHHHHHH---hcCCCC-------------------------------------
Confidence 6666444 2 46889999993 344444222 211000
Q ss_pred hhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCccccccc
Q 004103 274 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYN 353 (773)
Q Consensus 274 L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~ 353 (773)
....+......+.+..+.++-.....
T Consensus 209 --------~~~Iv~~~~~k~~~i~v~~p~~~~~~---------------------------------------------- 234 (814)
T COG1201 209 --------PCEIVDVSAAKKLEIKVISPVEDLIY---------------------------------------------- 234 (814)
T ss_pred --------ceEEEEcccCCcceEEEEecCCcccc----------------------------------------------
Confidence 00000000111111111111000000
Q ss_pred chhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCC-CeEEEEcCCCCHHHHHHHHHhhcCCCC
Q 004103 354 MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLND-FKFLRLDGSTKTEERGTLLKQFNAPDS 432 (773)
Q Consensus 354 ~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g-~~~~~i~G~~~~~eR~~~i~~Fn~~~~ 432 (773)
...=...+.+.+..+.++...+|||++.+.+.+.+...|...+ ..+...||+.+.++|..+-++|++|..
T Consensus 235 ---------~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~l 305 (814)
T COG1201 235 ---------DEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGEL 305 (814)
T ss_pred ---------ccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCc
Confidence 0001122333444444455689999999999999999998886 899999999999999999999999986
Q ss_pred CcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhh-hhcCCcCeEEEEEEEeCCCHHHHHHHHH
Q 004103 433 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRA-HRIGQKKEVRVFVLVSVGSIEEVILERA 503 (773)
Q Consensus 433 ~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa-~RiGQ~k~V~V~rLi~~~tiEe~i~~~~ 503 (773)
. .++||.....|||+-.+|.||+|.+|-.....+||+||+ ||+|... -.++++.+ .++.+-..+
T Consensus 306 r---avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~S---kg~ii~~~-r~dllE~~v 370 (814)
T COG1201 306 K---AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVS---KGIIIAED-RDDLLECLV 370 (814)
T ss_pred e---EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcc---cEEEEecC-HHHHHHHHH
Confidence 6 689999999999999999999999999999999999999 5565443 34455555 555544443
No 68
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.87 E-value=8.1e-21 Score=222.53 Aligned_cols=314 Identities=19% Similarity=0.183 Sum_probs=191.1
Q ss_pred CCCchHHHHHHHHHHHHhhcCCC-CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC-
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNL-NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP- 129 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~-~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p- 129 (773)
|.+++|||.+++..++ .+. ..++..+||+|||..+.+++..+.........++++||. .++.|-.+++.+|..
T Consensus 13 G~~PtpiQ~~~i~~il----~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~ 88 (844)
T TIGR02621 13 GYSPFPWQLSLAERFV----AGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGER 88 (844)
T ss_pred CCCCCHHHHHHHHHHH----cCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHH
Confidence 4569999999999877 455 456679999999975433332221111122233446798 888888888887763
Q ss_pred ------------------------CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--------H---
Q 004103 130 ------------------------SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--------L--- 174 (773)
Q Consensus 130 ------------------------~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--------l--- 174 (773)
.+++..+.|......+.... ....+|||.|.+.+.+..-+ +
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l----~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi 164 (844)
T TIGR02621 89 LPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLD----PHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPL 164 (844)
T ss_pred hcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhc----CCCCcEEEECHHHHcCCccccccccccccccc
Confidence 25566666665443333221 15678999998877553210 0
Q ss_pred h---hcCeeEEEEccccccCChhhHHHHHHHcc--cc----ceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHH
Q 004103 175 K---KVQWIYMIVDEGHRLKNHECALAKTISGY--QI----QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEW 245 (773)
Q Consensus 175 ~---~~~~~~vIiDEaH~lkn~~s~~~~~l~~~--~~----~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~ 245 (773)
. ..+..++|+||||........+.+++... .. ...+++|||+-. ...++... +..
T Consensus 165 ~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~-ei~~l~~~---~~~------------ 228 (844)
T TIGR02621 165 HAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRT-DGPDRTTL---LSA------------ 228 (844)
T ss_pred hhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCc-cHHHHHHH---Hcc------------
Confidence 0 12467999999994333333344444432 11 368999999732 22221100 000
Q ss_pred hcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHHhhcCC-CceeEEEEecCCHHHHHHHHHHHHhcccccccC
Q 004103 246 FNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLP-GKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTG 324 (773)
Q Consensus 246 f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP-~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~ 324 (773)
. |+.....+.. +. ++....+ +.+..
T Consensus 229 --~---------------------------p~~i~V~~~~----l~a~ki~q~v--~v~~e------------------- 254 (844)
T TIGR02621 229 --E---------------------------DYKHPVLKKR----LAAKKIVKLV--PPSDE------------------- 254 (844)
T ss_pred --C---------------------------Cceeeccccc----ccccceEEEE--ecChH-------------------
Confidence 0 0000000000 00 0111111 10100
Q ss_pred CCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHH-HHHHhhhcCCcEEEEeecHHHHHHHHHHHHh
Q 004103 325 TGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDR-LLPKLRKSGHRVLLFSQMTRLMDILEIYLKL 403 (773)
Q Consensus 325 ~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~-ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~ 403 (773)
.|+..+.. +...+...+.++||||+....++.+...|..
T Consensus 255 ----------------------------------------~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~ 294 (844)
T TIGR02621 255 ----------------------------------------KFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPK 294 (844)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHh
Confidence 01111111 1112234567999999999999999999998
Q ss_pred CCCeEEEEcCCCCHHHHH-----HHHHhhcC----CC----CCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHH
Q 004103 404 NDFKFLRLDGSTKTEERG-----TLLKQFNA----PD----SPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQ 470 (773)
Q Consensus 404 ~g~~~~~i~G~~~~~eR~-----~~i~~Fn~----~~----~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Q 470 (773)
.++ ..+||.+++.+|. .++++|.. +. .+...+||+|+++++|||+.. ++||++..| +..|+|
T Consensus 295 ~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQ 369 (844)
T TIGR02621 295 EKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQ 369 (844)
T ss_pred cCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHH
Confidence 887 8999999999999 78999976 32 011357999999999999975 999997766 479999
Q ss_pred HhhhhhhcCCcCe--EEEEEE
Q 004103 471 AEDRAHRIGQKKE--VRVFVL 489 (773)
Q Consensus 471 a~gRa~RiGQ~k~--V~V~rL 489 (773)
|+||++|.|.... +.|+.+
T Consensus 370 RiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 370 RFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HhcccCCCCCCCCceEEEEee
Confidence 9999999998654 444433
No 69
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.87 E-value=2.9e-22 Score=216.20 Aligned_cols=388 Identities=19% Similarity=0.250 Sum_probs=239.1
Q ss_pred hhhHHhhhhcccccCCCCccCCCCCcCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHH-HHHHHHHHHHhc--
Q 004103 26 SAIVLEWQNLTRSFILPQVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQ-TIALIAYLLENK-- 102 (773)
Q Consensus 26 ~~~~~~~~~~~~~~i~~~~~~~P~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~-aiali~~l~~~~-- 102 (773)
...++.|.++. +...+-..-..+....+.|.|...+..++. .....|-|.+||+|||+. +|-++..+.+..
T Consensus 177 ~~DvsAW~~l~---lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~---gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~ 250 (731)
T KOG0347|consen 177 KVDVSAWKNLF---LPMEILRALSNLGFSRPTEIQSLVLPAAIR---GKVDILGAAETGSGKTLAFGIPIVERLLESSDD 250 (731)
T ss_pred ccChHHHhcCC---CCHHHHHHHHhcCCCCCccchhhcccHhhc---cchhcccccccCCCceeeecchhhhhhhhccch
Confidence 44567787762 222222222222334778888888877763 225567799999999998 466666333211
Q ss_pred ----------CCCCCEEEEeCC-cchHHHHHHHHhhc--CCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHH
Q 004103 103 ----------GVTGPHVIVAPK-AVLPNWINEFSTWA--PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMR 169 (773)
Q Consensus 103 ----------~~~gp~LIVvP~-sll~qW~~E~~k~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~ 169 (773)
....-.|||+|+ .|..|-..-|...+ +++.+..+.|.-...++. .+.+ ..++|||+|+..+..
T Consensus 251 s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQq--RlL~--~~p~IVVATPGRlwe 326 (731)
T KOG0347|consen 251 SQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQ--RLLN--QRPDIVVATPGRLWE 326 (731)
T ss_pred HhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHH--HHHh--cCCCEEEecchHHHH
Confidence 111126999999 78888877777665 578888888876654433 2333 378999999887754
Q ss_pred ----hHHHHhhc-CeeEEEEcccccc--CChhhHHHHHHHccc------cceEEEecCCCCCCCHHHHHHhhccccCCCC
Q 004103 170 ----DRQYLKKV-QWIYMIVDEGHRL--KNHECALAKTISGYQ------IQRRLLLTGTPIQNSLQELWSLLNFLLPTIF 236 (773)
Q Consensus 170 ----~~~~l~~~-~~~~vIiDEaH~l--kn~~s~~~~~l~~~~------~~~rllLTgTP~~n~~~el~~lL~~L~p~~~ 236 (773)
+..++.++ +..++||||++|| +++-..+++.|..+. -...+..|||-.- ....
T Consensus 327 li~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~------------~~~~-- 392 (731)
T KOG0347|consen 327 LIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTL------------VLQQ-- 392 (731)
T ss_pred HHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeeh------------hhcC--
Confidence 23345554 5679999999999 555556666665553 2234888888311 0000
Q ss_pred CChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHh
Q 004103 237 NSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDV 316 (773)
Q Consensus 237 ~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~ 316 (773)
+.....+......+.. ..+..++.-+-+| -+| .+ +++++.+.- -..+
T Consensus 393 ------------~~~~~~k~~~k~~~~~---~kiq~Lmk~ig~~---------~kp---ki--iD~t~q~~t-a~~l--- 439 (731)
T KOG0347|consen 393 ------------PLSSSRKKKDKEDELN---AKIQHLMKKIGFR---------GKP---KI--IDLTPQSAT-ASTL--- 439 (731)
T ss_pred ------------hhHHhhhccchhhhhh---HHHHHHHHHhCcc---------CCC---ee--EecCcchhH-HHHH---
Confidence 0000000000000111 1122222211111 111 11 223322111 1111
Q ss_pred cccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHH
Q 004103 317 GRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDI 396 (773)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~ 396 (773)
..-+-.| |.+-.+. .|..+| ..-..+.||||+.++.+..
T Consensus 440 -------------------~Es~I~C--~~~eKD~-----------------ylyYfl---~ryPGrTlVF~NsId~vKR 478 (731)
T KOG0347|consen 440 -------------------TESLIEC--PPLEKDL-----------------YLYYFL---TRYPGRTLVFCNSIDCVKR 478 (731)
T ss_pred -------------------HHHhhcC--Cccccce-----------------eEEEEE---eecCCceEEEechHHHHHH
Confidence 1112223 1111110 001111 1224499999999999999
Q ss_pred HHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhh
Q 004103 397 LEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAH 476 (773)
Q Consensus 397 L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~ 476 (773)
|..+|...+++...+|..|.+++|.+.+++|...... +||+|+++++|||++.++|||+|..|-+...|++|-||..
T Consensus 479 Lt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~---VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTA 555 (731)
T KOG0347|consen 479 LTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSG---VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTA 555 (731)
T ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCe---EEEeehhhhccCCCCCcceEEEeecCCccceeEecccccc
Confidence 9999999999999999999999999999999885554 8999999999999999999999999999999999999999
Q ss_pred hcCCcCeEEEEEEEeC---------------------CCHHHHHHHHHHHHHhHHHHHHHc
Q 004103 477 RIGQKKEVRVFVLVSV---------------------GSIEEVILERAKQKMGIDAKVIQA 516 (773)
Q Consensus 477 RiGQ~k~V~V~rLi~~---------------------~tiEe~i~~~~~~K~~l~~~vi~~ 516 (773)
|.+..- |.|. ||.+ -.|++.++..+..+.+|+..+-.-
T Consensus 556 RA~~~G-vsvm-l~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~~ 614 (731)
T KOG0347|consen 556 RANSEG-VSVM-LCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREIDKL 614 (731)
T ss_pred cccCCC-eEEE-EeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHHHh
Confidence 987532 3322 2222 235788888888888877766443
No 70
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.86 E-value=3.5e-20 Score=200.18 Aligned_cols=331 Identities=18% Similarity=0.252 Sum_probs=229.1
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHH-HHHHHHHHhcCCC---CCEEEEeCC-cchHHHHHHHHhhc
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENKGVT---GPHVIVAPK-AVLPNWINEFSTWA 128 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai-ali~~l~~~~~~~---gp~LIVvP~-sll~qW~~E~~k~~ 128 (773)
..+...|..+|...+ .|...|-|.-||+|||+..+ .++..|...+... --+|||.|+ .|..|-.+-+.+..
T Consensus 90 v~~teiQ~~~Ip~aL----~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMAL----QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred ccHHHHHHhhcchhc----cCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 478899999998888 58888889999999999854 4455555543221 147999999 77778777776654
Q ss_pred --CCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH---HhhcCeeEEEEccccccCChh--hHHHHHH
Q 004103 129 --PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKNHE--CALAKTI 201 (773)
Q Consensus 129 --p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~---l~~~~~~~vIiDEaH~lkn~~--s~~~~~l 201 (773)
..+..-++-|..+..... ..+ ...+|+|+|+..+..+... |......++|+|||+|+...+ ..+..++
T Consensus 166 k~h~fSaGLiiGG~~~k~E~-eRi----~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii 240 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFEL-ERI----SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAII 240 (758)
T ss_pred hccccccceeecCchhHHHH-Hhh----hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHH
Confidence 245555555555422221 111 6789999999999876543 445577899999999996533 3455556
Q ss_pred Hccc-cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhh
Q 004103 202 SGYQ-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 280 (773)
Q Consensus 202 ~~~~-~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lR 280 (773)
..++ .+..||.|||+.. +..+|.-| ++-+|.
T Consensus 241 ~~lP~~RQTLLFSATqt~-svkdLaRL-sL~dP~---------------------------------------------- 272 (758)
T KOG0343|consen 241 ENLPKKRQTLLFSATQTK-SVKDLARL-SLKDPV---------------------------------------------- 272 (758)
T ss_pred HhCChhheeeeeecccch-hHHHHHHh-hcCCCc----------------------------------------------
Confidence 6664 4566999999843 33443221 111121
Q ss_pred hhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHH
Q 004103 281 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEI 360 (773)
Q Consensus 281 R~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l 360 (773)
.+-+...- ....+.+ |++. |+.
T Consensus 273 --------------~vsvhe~a------------------------~~atP~~----L~Q~----y~~------------ 294 (758)
T KOG0343|consen 273 --------------YVSVHENA------------------------VAATPSN----LQQS----YVI------------ 294 (758)
T ss_pred --------------EEEEeccc------------------------cccChhh----hhhe----EEE------------
Confidence 11111000 0000000 0000 000
Q ss_pred HhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 004103 361 IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 438 (773)
Q Consensus 361 ~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~L 438 (773)
+....|+.+|...+.... ..|.|||......+..+...+... |++...++|.+++..|.++.++|..... ++|
T Consensus 295 v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~---~vL 369 (758)
T KOG0343|consen 295 VPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRA---VVL 369 (758)
T ss_pred EehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcc---eEE
Confidence 122347777777776643 459999999999999998887654 9999999999999999999999987433 589
Q ss_pred EecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHH
Q 004103 439 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM 507 (773)
Q Consensus 439 lSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~ 507 (773)
.||+++++|||++.+|.||-+|.|-+...|++|.||..|.+..-+..++.. -+-+|.|+.+++.|.
T Consensus 370 F~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~---psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 370 FCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT---PSEEEAMLKKLQKKK 435 (758)
T ss_pred EeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc---chhHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999988777655433 233688888888774
No 71
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.86 E-value=2.1e-21 Score=201.41 Aligned_cols=316 Identities=20% Similarity=0.294 Sum_probs=211.4
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHH-HHHHHHHHHh------cCCCCCE-EEEeCC-cchHHHHHHHH
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT-IALIAYLLEN------KGVTGPH-VIVAPK-AVLPNWINEFS 125 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~a-iali~~l~~~------~~~~gp~-LIVvP~-sll~qW~~E~~ 125 (773)
.+.|.|+.|+.-++ .+..-|-..-||+|||++. +.++...++. ....||+ |||||+ .+..|-..-+.
T Consensus 192 ~PTpIQvQGlPvvL----sGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceEe----ecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 67788999988777 3666676677999999873 3444433332 1234565 999999 55555444343
Q ss_pred hh--------cCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCCh--
Q 004103 126 TW--------APSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNH-- 193 (773)
Q Consensus 126 k~--------~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn~-- 193 (773)
.+ +|.++....-|.-..+.++.... ...+++|+|+..++.-.. .+..--..|+.+|||+|+-.-
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~----~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGF 343 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDVVR----RGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGF 343 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHHHh----cCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccc
Confidence 33 36666666666666555543322 678999999999876422 223334568999999999543
Q ss_pred hhHHHHHHHccccc-eEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHh
Q 004103 194 ECALAKTISGYQIQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHH 272 (773)
Q Consensus 194 ~s~~~~~l~~~~~~-~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~ 272 (773)
.......+..|++. ..||+|||-- .. + ..| .+ ..
T Consensus 344 Eddir~iF~~FK~QRQTLLFSATMP-~K---I---------------Q~F----Ak----------------------SA 378 (610)
T KOG0341|consen 344 EDDIRTIFSFFKGQRQTLLFSATMP-KK---I---------------QNF----AK----------------------SA 378 (610)
T ss_pred hhhHHHHHHHHhhhhheeeeecccc-HH---H---------------HHH----HH----------------------hh
Confidence 33344444555544 4588888831 00 0 001 00 00
Q ss_pred hhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccc
Q 004103 273 VIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY 352 (773)
Q Consensus 273 ~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~ 352 (773)
+++|. ++.+. .....++ +.+.+
T Consensus 379 LVKPv-------------------tvNVG-----------------------RAGAAsl-dViQe--------------- 400 (610)
T KOG0341|consen 379 LVKPV-------------------TVNVG-----------------------RAGAASL-DVIQE--------------- 400 (610)
T ss_pred cccce-------------------EEecc-----------------------cccccch-hHHHH---------------
Confidence 11111 11110 0011111 11111
Q ss_pred cchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCC
Q 004103 353 NMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 432 (773)
Q Consensus 353 ~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~ 432 (773)
-+.+....|+ ..+|.-+.++.-+|||||.-..-+|-|.+||-.+|+..+.|||+-.+++|..+|+.|+.+..
T Consensus 401 -----vEyVkqEaKi---VylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkK 472 (610)
T KOG0341|consen 401 -----VEYVKQEAKI---VYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKK 472 (610)
T ss_pred -----HHHHHhhhhh---hhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCC
Confidence 1223344454 44555556677899999999999999999999999999999999999999999999999888
Q ss_pred CcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCC
Q 004103 433 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 494 (773)
Q Consensus 433 ~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~t 494 (773)
+ +|++|++++-|||+++..|||+||.|-...+|++|+||.+|-|.+--. -.||.+++
T Consensus 473 D---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiA--TTfINK~~ 529 (610)
T KOG0341|consen 473 D---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIA--TTFINKNQ 529 (610)
T ss_pred c---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCccee--eeeecccc
Confidence 7 899999999999999999999999999999999999999999876532 23455544
No 72
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=4.3e-20 Score=197.58 Aligned_cols=316 Identities=20% Similarity=0.290 Sum_probs=216.6
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHH-HHHHHHh---cCCCCCE-EEEeCC-cchHHHHHHHHhhc
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLEN---KGVTGPH-VIVAPK-AVLPNWINEFSTWA 128 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aial-i~~l~~~---~~~~gp~-LIVvP~-sll~qW~~E~~k~~ 128 (773)
++.|.|-.+|.-.+ .+...|-..-+|+|||-..+.- +.+.+.. ....||+ |||||+ .+..|...|.++|+
T Consensus 245 kptpiq~qalptal----sgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 245 KPTPIQCQALPTAL----SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred cCCccccccccccc----ccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 44555666665555 2555565567999999765433 3333332 2345676 677898 88899999999985
Q ss_pred C--CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCChh--hHHHHHHH
Q 004103 129 P--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHE--CALAKTIS 202 (773)
Q Consensus 129 p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn~~--s~~~~~l~ 202 (773)
. +++++..+|......+..... ..+.+||+|++.++.... .....+..|+||||+.+|-.-+ .+...+..
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~ 396 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQ 396 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHh
Confidence 3 566665555444333333221 567899999999976432 2333467899999999996533 33333445
Q ss_pred cccc-ceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhh---
Q 004103 203 GYQI-QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI--- 278 (773)
Q Consensus 203 ~~~~-~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~--- 278 (773)
.++. +..|++|+|-- .++.++.+.++
T Consensus 397 hirpdrQtllFsaTf~--------------------------------------------------~kIe~lard~L~dp 426 (731)
T KOG0339|consen 397 HIRPDRQTLLFSATFK--------------------------------------------------KKIEKLARDILSDP 426 (731)
T ss_pred hcCCcceEEEeeccch--------------------------------------------------HHHHHHHHHHhcCC
Confidence 5544 45588888820 01111111111
Q ss_pred hhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhH
Q 004103 279 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKE 358 (773)
Q Consensus 279 lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~ 358 (773)
+|++.-+|...--. +..+|.+ |-
T Consensus 427 VrvVqg~vgean~d-ITQ~V~V-----------------------------------------~~--------------- 449 (731)
T KOG0339|consen 427 VRVVQGEVGEANED-ITQTVSV-----------------------------------------CP--------------- 449 (731)
T ss_pred eeEEEeehhccccc-hhheeee-----------------------------------------cc---------------
Confidence 12222222211000 0111110 10
Q ss_pred HHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 004103 359 EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 438 (773)
Q Consensus 359 ~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~L 438 (773)
....|+.+|.+-|......| +||||+.-....+.|...|..+|+.+..+||++.+.+|.+.|.+|+....+ +|
T Consensus 450 ---s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~---Vl 522 (731)
T KOG0339|consen 450 ---SEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP---VL 522 (731)
T ss_pred ---CcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc---eE
Confidence 12347788888777766555 999999999999999999999999999999999999999999999998777 89
Q ss_pred EecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCC
Q 004103 439 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 494 (773)
Q Consensus 439 lSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~t 494 (773)
+.|+++.+|++++...+||+||.--+...+.|++||.+|.|-+ -..|.|+|+..
T Consensus 523 vatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKD 576 (731)
T KOG0339|consen 523 VATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKD 576 (731)
T ss_pred EEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhh
Confidence 9999999999999999999999999999999999999999977 66788888753
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.85 E-value=2.7e-19 Score=207.84 Aligned_cols=391 Identities=15% Similarity=0.156 Sum_probs=221.0
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--Cc
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--SI 131 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~~ 131 (773)
.++|||.+.+..+.- +.++|+...||.|||++++..+..... ....++||+|+ .|..+|.+++..++. ++
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~l~aL---~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLYLNAL---TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHHHHhh---cCCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 467777777765552 344799999999999997655422222 12368999999 677777777655432 44
Q ss_pred eEEEecCC-hh--HHHHHHHHHHhhcCCccEEEcCHHHHHHhH--HH-------HhhcCeeEEEEccccccCChhhHHHH
Q 004103 132 AAVVYDGR-PD--ERKAMREEFFSERGRFNVLITHYDLIMRDR--QY-------LKKVQWIYMIVDEGHRLKNHECALAK 199 (773)
Q Consensus 132 ~v~~~~g~-~~--~r~~~~~~~~~~~~~~~VvItTye~l~~~~--~~-------l~~~~~~~vIiDEaH~lkn~~s~~~~ 199 (773)
.+.+..+. .. .....+... ..++|+++|+..+..+. .. +....+.++||||||.+.-.
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~----y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiD------ 210 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKI----YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLD------ 210 (762)
T ss_pred cEEEEECCCCccccCHHHHHHh----CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhc------
Confidence 55443332 11 111111111 46899999999985431 11 11236779999999987321
Q ss_pred HHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCC------------------hHhHHHHhcccccccCCccCChH
Q 004103 200 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNS------------------VENFEEWFNAPFKDRGQVALTDE 261 (773)
Q Consensus 200 ~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~------------------~~~f~~~f~~~~~~~~~~~~~~~ 261 (773)
.+...|++||.|-.. ..+|...+-+-...-.. ...-.+.|+.+ .+.+.
T Consensus 211 -----eartpliisg~~~~~--~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~-------~l~~~ 276 (762)
T TIGR03714 211 -----SAQTPLVISGAPRVQ--SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID-------NLYSE 276 (762)
T ss_pred -----cCcCCeeeeCCCccc--hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC-------ccCCh
Confidence 133458889876533 34665553221111110 00111111110 11111
Q ss_pred HHHHHHHHHHhhhhhhh-hhhhhhHHhhcCCCceeEEEEe------cCCHHHHHHHHHHHHhcccccccCC---------
Q 004103 262 EQLLIIRRLHHVIRPFI-LRRKKDEVEKYLPGKSQVILKC------DMSAWQKVYYQQVTDVGRVGLDTGT--------- 325 (773)
Q Consensus 262 ~~~~~~~~L~~~L~p~~-lRR~k~dv~~~LP~k~e~~v~~------~~s~~q~~~Y~~i~~~~~~~~~~~~--------- 325 (773)
+....+..+...|+-.. +.+-+ +.. +.+....+|-- +-..++.-+-+.+.......+....
T Consensus 277 ~~~~~~~~i~~al~A~~~~~~d~-dYi--V~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~q 353 (762)
T TIGR03714 277 EYFELVRHINLALRAHYLFKRNK-DYV--VTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQ 353 (762)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCC-ceE--EECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHH
Confidence 22222223333333321 11111 100 11111111110 0011223333333322221111110
Q ss_pred ----------CccchHHHHHHHHHHHhCCCCcccccccchhhH-----HHHhhcchHHHHHHHHHHhhhcCCcEEEEeec
Q 004103 326 ----------GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKE-----EIIRASGKFELLDRLLPKLRKSGHRVLLFSQM 390 (773)
Q Consensus 326 ----------~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~-----~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~ 390 (773)
|-+.....-...+.++-+-+.+..+...+.... -......|+.++.+.+..+...+.++||||..
T Consensus 354 n~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s 433 (762)
T TIGR03714 354 NLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGS 433 (762)
T ss_pred HHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 011111112233444444443333322211100 01234568999999998888889999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcc---------cCCeeEEeCC
Q 004103 391 TRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ---------TADTVIIFDS 461 (773)
Q Consensus 391 ~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~---------~ad~VI~~D~ 461 (773)
....+.+...|...|+++..++|.+...+|..+...|+.+. ++|+|+.+|+|+|++ ..++||.|++
T Consensus 434 ~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g~-----VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ 508 (762)
T TIGR03714 434 VEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKGA-----VTVATSMAGRGTDIKLGKGVAELGGLAVIGTERM 508 (762)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCCe-----EEEEccccccccCCCCCccccccCCeEEEEecCC
Confidence 99999999999999999999999999988877777776652 799999999999999 7899999999
Q ss_pred CCChhhHHHHhhhhhhcCCcCeEE
Q 004103 462 DWNPQMDQQAEDRAHRIGQKKEVR 485 (773)
Q Consensus 462 ~wNp~~~~Qa~gRa~RiGQ~k~V~ 485 (773)
|-+... .|+.||++|.|..-.+.
T Consensus 509 ps~rid-~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 509 ENSRVD-LQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred CCcHHH-HHhhhcccCCCCceeEE
Confidence 977655 99999999998776543
No 74
>PRK09401 reverse gyrase; Reviewed
Probab=99.85 E-value=2.1e-19 Score=221.20 Aligned_cols=293 Identities=15% Similarity=0.171 Sum_probs=195.8
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCC-
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS- 130 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~- 130 (773)
|.+|+|+|..++..++ .+.+.++..+||+|||..++.++.++.. ....+|||+|+ .|+.|+...+.+++..
T Consensus 78 G~~pt~iQ~~~i~~il----~g~dv~i~ApTGsGKT~f~l~~~~~l~~---~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLL----LGESFAIIAPTGVGKTTFGLVMSLYLAK---KGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred CCCCcHHHHHHHHHHH----CCCcEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 5689999999998877 5888999999999999755544444432 24579999999 8889999999998753
Q ss_pred -ceEEEecCC----hhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChh-----------
Q 004103 131 -IAAVVYDGR----PDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHE----------- 194 (773)
Q Consensus 131 -~~v~~~~g~----~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~----------- 194 (773)
+.+.+..|. ..++......+.. +.++|+|+|++.+.+....+....+++|||||||++....
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l~~--~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lG 228 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERLKE--GDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLG 228 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHHhc--CCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCC
Confidence 333333322 2223333222222 5789999999999988777776679999999999985311
Q ss_pred ---hHHHHHHHccc-------------------------cceEEEecCCCCCCCHHH-HH-HhhccccCCCCCChHhHHH
Q 004103 195 ---CALAKTISGYQ-------------------------IQRRLLLTGTPIQNSLQE-LW-SLLNFLLPTIFNSVENFEE 244 (773)
Q Consensus 195 ---s~~~~~l~~~~-------------------------~~~rllLTgTP~~n~~~e-l~-~lL~~L~p~~~~~~~~f~~ 244 (773)
..+..++..++ ....++.|||........ ++ .++.|
T Consensus 229 F~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~-------------- 294 (1176)
T PRK09401 229 FSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGF-------------- 294 (1176)
T ss_pred CCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceE--------------
Confidence 11222222221 234567788754321111 00 00000
Q ss_pred HhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccC
Q 004103 245 WFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTG 324 (773)
Q Consensus 245 ~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~ 324 (773)
-+.+. ...+.......+.
T Consensus 295 ---------------------------------~v~~~----~~~~rnI~~~yi~------------------------- 312 (1176)
T PRK09401 295 ---------------------------------EVGSP----VFYLRNIVDSYIV------------------------- 312 (1176)
T ss_pred ---------------------------------EecCc----ccccCCceEEEEE-------------------------
Confidence 00000 0000000000000
Q ss_pred CCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHH---HHHHHHHH
Q 004103 325 TGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRL---MDILEIYL 401 (773)
Q Consensus 325 ~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~---ld~L~~~L 401 (773)
...|...|..++..+ +..+||||+.... ++.+..+|
T Consensus 313 --------------------------------------~~~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L 351 (1176)
T PRK09401 313 --------------------------------------DEDSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYL 351 (1176)
T ss_pred --------------------------------------cccHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHH
Confidence 013555666666554 4589999998766 99999999
Q ss_pred HhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEe----cccccccCCccc-CCeeEEeCCCC------ChhhHHH
Q 004103 402 KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS----TRAGGLGLNLQT-ADTVIIFDSDW------NPQMDQQ 470 (773)
Q Consensus 402 ~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlS----t~agg~GLNL~~-ad~VI~~D~~w------Np~~~~Q 470 (773)
...|+++..+||++ ...+++|.+|..+ +||+ |+++++|||++. +.+|||||.|- ....+.+
T Consensus 352 ~~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~ 423 (1176)
T PRK09401 352 EDLGINAELAISGF-----ERKFEKFEEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPF 423 (1176)
T ss_pred HHCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHH
Confidence 99999999999999 2346999998877 6777 689999999998 89999999997 6778889
Q ss_pred HhhhhhhcC
Q 004103 471 AEDRAHRIG 479 (773)
Q Consensus 471 a~gRa~RiG 479 (773)
++||+..+-
T Consensus 424 ~~~r~~~~~ 432 (1176)
T PRK09401 424 LLLRLLSLL 432 (1176)
T ss_pred HHHHHHhhc
Confidence 999997543
No 75
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.85 E-value=1.1e-19 Score=224.30 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=86.2
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhCC---------------------------------CeEEEEcCCCCHHHHHHHHHh
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLND---------------------------------FKFLRLDGSTKTEERGTLLKQ 426 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~g---------------------------------~~~~~i~G~~~~~eR~~~i~~ 426 (773)
.+.++||||+.+..++.+...|.... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999998886531 124578899999999999999
Q ss_pred hcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhc
Q 004103 427 FNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI 478 (773)
Q Consensus 427 Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~Ri 478 (773)
|++|..+ +||+|.+++.|||+..+|+||+|++|.+...++||+||++|.
T Consensus 323 fK~G~Lr---vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR---CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce---EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9998876 799999999999999999999999999999999999999985
No 76
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.84 E-value=6.3e-19 Score=208.28 Aligned_cols=363 Identities=13% Similarity=0.088 Sum_probs=204.4
Q ss_pred CCchHHHHHHHHHHHHhhcC------CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHh
Q 004103 54 GELRAYQLEGLQWMLSLFNN------NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFST 126 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~------~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k 126 (773)
.-+|+||..||+.++....+ ..+|++.+.+|+|||++++.++..++... ...++|||||. .|..||..+|..
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~-~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL-KNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc-CCCeEEEEECcHHHHHHHHHHHHh
Confidence 45899999999999887644 35799999999999999999998887543 34578999998 899999999999
Q ss_pred hcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhH-HHHhhcC----eeEEEEccccccCChhhHHHHHH
Q 004103 127 WAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR-QYLKKVQ----WIYMIVDEGHRLKNHECALAKTI 201 (773)
Q Consensus 127 ~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~-~~l~~~~----~~~vIiDEaH~lkn~~s~~~~~l 201 (773)
+.+.... -.++ ...+...+.. ....|+|+|++.+.+.. ..+..+. ..+||+|||||.. ...+...+
T Consensus 316 ~~~~~~~--~~~s---~~~L~~~l~~--~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~--~~~~~~~l 386 (667)
T TIGR00348 316 LQKDCAE--RIES---IAELKRLLEK--DDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ--YGELAKNL 386 (667)
T ss_pred hCCCCCc--ccCC---HHHHHHHHhC--CCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc--chHHHHHH
Confidence 8753211 1112 2222222211 35679999999997632 2222221 2389999999974 23445555
Q ss_pred -HccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhh
Q 004103 202 -SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 280 (773)
Q Consensus 202 -~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lR 280 (773)
..++...+++|||||+...-.+-+..+.. .|+.++.... +.+.+
T Consensus 387 ~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~--------------~fg~~i~~Y~---------------~~~AI------ 431 (667)
T TIGR00348 387 KKALKNASFFGFTGTPIFKKDRDTSLTFAY--------------VFGRYLHRYF---------------ITDAI------ 431 (667)
T ss_pred HhhCCCCcEEEEeCCCcccccccccccccC--------------CCCCeEEEee---------------HHHHh------
Confidence 46778899999999985421111111110 0111111000 00000
Q ss_pred hhhhHHhhc-CCCceeEEEEe--cCCHHH-HHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchh
Q 004103 281 RKKDEVEKY-LPGKSQVILKC--DMSAWQ-KVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 356 (773)
Q Consensus 281 R~k~dv~~~-LP~k~e~~v~~--~~s~~q-~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~ 356 (773)
... +-+.....+.+ .++... ...+............ ......+......+....
T Consensus 432 ------~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~-------------- 489 (667)
T TIGR00348 432 ------RDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIR--EITKESLKEKLQKTKKIL-------------- 489 (667)
T ss_pred ------hcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhcccc--HHHHHHHHHHHHHHHhhh--------------
Confidence 000 00000111111 111110 1111111110000000 000000111111111111
Q ss_pred hHHHHhhcchHHHHHH-HHHHh----hhcCCcEEEEeecHHHHHHHHHHHHhC-----CCeEEEEcCCCCHH--------
Q 004103 357 KEEIIRASGKFELLDR-LLPKL----RKSGHRVLLFSQMTRLMDILEIYLKLN-----DFKFLRLDGSTKTE-------- 418 (773)
Q Consensus 357 ~~~l~~~s~K~~~L~~-ll~~l----~~~g~kvLIFsq~~~~ld~L~~~L~~~-----g~~~~~i~G~~~~~-------- 418 (773)
.+...+..+.. ++..+ ...+.|.+|||..+..+..+...|... +...+.++|+.+.+
T Consensus 490 -----~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~ 564 (667)
T TIGR00348 490 -----FNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNK 564 (667)
T ss_pred -----cChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHH
Confidence 11111111111 11111 123579999999999988888777543 34566777765443
Q ss_pred -------------HHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhc-CCcC-e
Q 004103 419 -------------ERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI-GQKK-E 483 (773)
Q Consensus 419 -------------eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~Ri-GQ~k-~ 483 (773)
....++++|.+++ +.. +||+++...+|+|.|.++++++.-|--+ +.++|++||+.|+ +..| .
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~Fk~~~-~~~-ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~ 641 (667)
T TIGR00348 565 HIRTKFDKSDGFEIYYKDLERFKKEE-NPK-LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTF 641 (667)
T ss_pred HhccccccchhhhHHHHHHHHhcCCC-Cce-EEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCC
Confidence 2247899998742 233 6777899999999999999998887665 5689999999995 4434 4
Q ss_pred EEEEEEEe
Q 004103 484 VRVFVLVS 491 (773)
Q Consensus 484 V~V~rLi~ 491 (773)
..|+.++.
T Consensus 642 g~IvDy~g 649 (667)
T TIGR00348 642 GLIVDYRG 649 (667)
T ss_pred EEEEECcC
Confidence 77777765
No 77
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.84 E-value=4.6e-19 Score=199.36 Aligned_cols=303 Identities=18% Similarity=0.277 Sum_probs=212.6
Q ss_pred CCchHHHHHHHHHHHHhhcCCC--CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc-hHHHHHHHHhhcC-
Q 004103 54 GELRAYQLEGLQWMLSLFNNNL--NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPNWINEFSTWAP- 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~--~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sl-l~qW~~E~~k~~p- 129 (773)
.+|...|..++.-+..-...+. +-+|..++|+|||++|+..+....+.+ .-+.+.+|+.+ ..|-...+.+|++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G---~Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG---YQAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC---CeeEEeccHHHHHHHHHHHHHHHhhh
Confidence 4789999999999887655443 348999999999999987777777653 35688999955 4778999999996
Q ss_pred -CceEEEecCCh--hHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc-c
Q 004103 130 -SIAAVVYDGRP--DERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-Q 205 (773)
Q Consensus 130 -~~~v~~~~g~~--~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~-~ 205 (773)
++.+....|+- ..|+.+...+.+ +..++||.|...+.....+ .+..+|||||=||+. -.....|..- .
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~l~~l~~--G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFG---V~QR~~L~~KG~ 409 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEILEQLAS--GEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFG---VHQRLALREKGE 409 (677)
T ss_pred cCCeEEEeecccchhHHHHHHHHHhC--CCCCEEEEcchhhhcceee---cceeEEEEecccccc---HHHHHHHHHhCC
Confidence 57777777754 345555555554 7899999999988654332 246799999999984 3334444333 3
Q ss_pred -cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhh
Q 004103 206 -IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 284 (773)
Q Consensus 206 -~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~ 284 (773)
..+.|.||||||+-.+.=- .|++. .-
T Consensus 410 ~~Ph~LvMTATPIPRTLAlt----------~fgDl-------------------------------------------dv 436 (677)
T COG1200 410 QNPHVLVMTATPIPRTLALT----------AFGDL-------------------------------------------DV 436 (677)
T ss_pred CCCcEEEEeCCCchHHHHHH----------Hhccc-------------------------------------------cc
Confidence 5899999999998765311 11111 01
Q ss_pred HHhhcCCCceeEEEE-ecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhh
Q 004103 285 EVEKYLPGKSQVILK-CDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 363 (773)
Q Consensus 285 dv~~~LP~k~e~~v~-~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~ 363 (773)
.+.+++|+....+.. +-....-.++
T Consensus 437 S~IdElP~GRkpI~T~~i~~~~~~~v------------------------------------------------------ 462 (677)
T COG1200 437 SIIDELPPGRKPITTVVIPHERRPEV------------------------------------------------------ 462 (677)
T ss_pred hhhccCCCCCCceEEEEeccccHHHH------------------------------------------------------
Confidence 233457776332222 1111111112
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHH--------HHHHHHHHHHh--CCCeEEEEcCCCCHHHHHHHHHhhcCCCCC
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTR--------LMDILEIYLKL--NDFKFLRLDGSTKTEERGTLLKQFNAPDSP 433 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~--------~ld~L~~~L~~--~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~ 433 (773)
+.++-..+ ..|+++.+.|.-.+ .+..+...|.. .++++..+||.|+.+++.+++.+|+++..+
T Consensus 463 ------~e~i~~ei-~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ 535 (677)
T COG1200 463 ------YERIREEI-AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID 535 (677)
T ss_pred ------HHHHHHHH-HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc
Confidence 22222222 35777777776542 23344444442 267899999999999999999999999888
Q ss_pred cEEEEEecccccccCCcccCCeeEEeCCC-CChhhHHHHhhhhhhcCCcCeE
Q 004103 434 YFMFLLSTRAGGLGLNLQTADTVIIFDSD-WNPQMDQQAEDRAHRIGQKKEV 484 (773)
Q Consensus 434 ~~v~LlSt~agg~GLNL~~ad~VI~~D~~-wNp~~~~Qa~gRa~RiGQ~k~V 484 (773)
+|+||.+..+|||+++|+.+|++++. +--++..|-.||++|=+...-|
T Consensus 536 ---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 536 ---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred ---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEE
Confidence 89999999999999999999999987 5788999999999995544433
No 78
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.83 E-value=9.7e-20 Score=199.43 Aligned_cols=321 Identities=19% Similarity=0.233 Sum_probs=221.1
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC---C
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP---S 130 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p---~ 130 (773)
.+.+.|..||..+. .+..-|+..-.|+|||++...++..-+.-....--.+||+|+ .+.-|....|.+.+| +
T Consensus 47 ~ptkiQaaAIP~~~----~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g 122 (980)
T KOG4284|consen 47 LPTKIQAAAIPAIF----SKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTG 122 (980)
T ss_pred CCCchhhhhhhhhh----cccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccC
Confidence 56678999987766 477789999999999988533333333322333356899999 777788888888776 6
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhH--HHHhhcCeeEEEEccccccCChhh---HHHHHHHccc
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKNHEC---ALAKTISGYQ 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaH~lkn~~s---~~~~~l~~~~ 205 (773)
+++.+|.|...-....... ...+|+|.|+..+.... ..+..-+.+++|+|||+.+-...+ .+..++..++
T Consensus 123 ~~csvfIGGT~~~~d~~rl-----k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP 197 (980)
T KOG4284|consen 123 ARCSVFIGGTAHKLDLIRL-----KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLP 197 (980)
T ss_pred cceEEEecCchhhhhhhhh-----hhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcc
Confidence 7888888766543332221 45679999999986643 345555788999999999865433 4555666664
Q ss_pred -cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhh-hhhhhhh
Q 004103 206 -IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP-FILRRKK 283 (773)
Q Consensus 206 -~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p-~~lRR~k 283 (773)
.+..+..|||=- .++.++ |.++++. .++|...
T Consensus 198 ~~rQv~a~SATYp-~nLdn~---------------------------------------------Lsk~mrdp~lVr~n~ 231 (980)
T KOG4284|consen 198 QIRQVAAFSATYP-RNLDNL---------------------------------------------LSKFMRDPALVRFNA 231 (980)
T ss_pred hhheeeEEeccCc-hhHHHH---------------------------------------------HHHHhcccceeeccc
Confidence 566788999932 222222 3333332 2333333
Q ss_pred hHHhhcCCCcee-EEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHh
Q 004103 284 DEVEKYLPGKSQ-VILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIR 362 (773)
Q Consensus 284 ~dv~~~LP~k~e-~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~ 362 (773)
+++. |-.... ++..|...-... .
T Consensus 232 ~d~~--L~GikQyv~~~~s~nnsve------------------------------------------------------e 255 (980)
T KOG4284|consen 232 DDVQ--LFGIKQYVVAKCSPNNSVE------------------------------------------------------E 255 (980)
T ss_pred CCce--eechhheeeeccCCcchHH------------------------------------------------------H
Confidence 3322 212222 222221110000 0
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
.--|++.|-.++..+.- ...||||....-++-++.+|...|+++..|.|.|++.+|..+++.+++-. ++ +|+||+
T Consensus 256 mrlklq~L~~vf~~ipy--~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~--~r-ILVsTD 330 (980)
T KOG4284|consen 256 MRLKLQKLTHVFKSIPY--VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFR--VR-ILVSTD 330 (980)
T ss_pred HHHHHHHHHHHHhhCch--HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhce--EE-EEEecc
Confidence 11256666666666532 37899999999999999999999999999999999999999999998633 33 799999
Q ss_pred cccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeC
Q 004103 443 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 492 (773)
Q Consensus 443 agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~ 492 (773)
.-++|||-..++.||++|+|-+-..|.+|||||+|.|..- ..|-++..+
T Consensus 331 LtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G-~aVT~~~~~ 379 (980)
T KOG4284|consen 331 LTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG-AAVTLLEDE 379 (980)
T ss_pred hhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc-eeEEEeccc
Confidence 9999999999999999999999999999999999999764 334344433
No 79
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.1e-19 Score=190.03 Aligned_cols=309 Identities=18% Similarity=0.239 Sum_probs=206.3
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHH-----HHHHHhcCCCC-CEEEEeCC-cchHHHHHHHHhh
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI-----AYLLENKGVTG-PHVIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali-----~~l~~~~~~~g-p~LIVvP~-sll~qW~~E~~k~ 127 (773)
++.|.|-.+-.-++ ++...|-...||+|||+..|.-- +.........+ .+||++|+ .|..|-..|..++
T Consensus 242 KPtPIqSQaWPI~L----QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQAWPILL----QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcccceee----cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 56667766655455 58888999999999998755321 11111122223 46888998 6666677777766
Q ss_pred c--CCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHh--HHHHhhcCeeEEEEccccccCC--hhhHHHHHH
Q 004103 128 A--PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKN--HECALAKTI 201 (773)
Q Consensus 128 ~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaH~lkn--~~s~~~~~l 201 (773)
. ....+.+|.|.... .++.+ +. .+++++|.|+..+.+- ...+......|+|+|||++|.. ...++.++|
T Consensus 318 syng~ksvc~ygggnR~-eqie~-lk---rgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkil 392 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRN-EQIED-LK---RGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKIL 392 (629)
T ss_pred hhcCcceEEEecCCCch-hHHHH-Hh---cCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHh
Confidence 4 23455556554422 22222 21 6789999999998653 2233444678999999999965 456788888
Q ss_pred HccccceEEE-ecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhh
Q 004103 202 SGYQIQRRLL-LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 280 (773)
Q Consensus 202 ~~~~~~~rll-LTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lR 280 (773)
..+...+... -|||- +. -+|
T Consensus 393 ldiRPDRqtvmTSATW-P~----------------------------------------------------------~Vr 413 (629)
T KOG0336|consen 393 LDIRPDRQTVMTSATW-PE----------------------------------------------------------GVR 413 (629)
T ss_pred hhcCCcceeeeecccC-ch----------------------------------------------------------HHH
Confidence 8887666544 45662 11 112
Q ss_pred hhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHH
Q 004103 281 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEI 360 (773)
Q Consensus 281 R~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l 360 (773)
|+.....++ |...++=.++|... .+ .+ ++ ++ +
T Consensus 414 rLa~sY~Ke--p~~v~vGsLdL~a~------------------~s--Vk--Q~-------------i~-----------v 445 (629)
T KOG0336|consen 414 RLAQSYLKE--PMIVYVGSLDLVAV------------------KS--VK--QN-------------II-----------V 445 (629)
T ss_pred HHHHHhhhC--ceEEEecccceeee------------------ee--ee--ee-------------EE-----------e
Confidence 222111110 00000000010000 00 00 00 00 0
Q ss_pred HhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEe
Q 004103 361 IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 440 (773)
Q Consensus 361 ~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlS 440 (773)
...+.|++.+..++..+ ....|+|||+...-++|-|..-|...|+....+||+-.+.+|+.+++.|++|... +|++
T Consensus 446 ~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vr---ILva 521 (629)
T KOG0336|consen 446 TTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVR---ILVA 521 (629)
T ss_pred cccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceE---EEEE
Confidence 02244665555555554 4577999999999999999999999999999999999999999999999998765 7999
Q ss_pred cccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCe
Q 004103 441 TRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 483 (773)
Q Consensus 441 t~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~ 483 (773)
|+.+++|||+++..||++||.|-|...|++|+||++|.|.+-.
T Consensus 522 TDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 522 TDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred echhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 9999999999999999999999999999999999999997754
No 80
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=2.6e-18 Score=201.50 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=105.5
Q ss_pred hhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEec
Q 004103 362 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 441 (773)
Q Consensus 362 ~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt 441 (773)
....|+.+|...+......+.++||||......+.+...|...|+++..++|.+...++..+...++.+. ++|+|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g~-----VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKGA-----VTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCCe-----EEEEc
Confidence 3456899999999887778999999999999999999999999999999999999888887777776542 79999
Q ss_pred ccccccCCc---ccCC-----eeEEeCCCCChhhHHHHhhhhhhcCCcCeE
Q 004103 442 RAGGLGLNL---QTAD-----TVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 484 (773)
Q Consensus 442 ~agg~GLNL---~~ad-----~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V 484 (773)
+.+|+|+|+ +.+. +||++|.|-|+..|.|+.||++|.|..-.+
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 999999999 5777 999999999999999999999999987554
No 81
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.82 E-value=1.7e-18 Score=201.96 Aligned_cols=329 Identities=16% Similarity=0.183 Sum_probs=199.6
Q ss_pred CCCCcCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHH----------HHH--HhcCCCCCEEEEeCC
Q 004103 47 QPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA----------YLL--ENKGVTGPHVIVAPK 114 (773)
Q Consensus 47 ~P~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~----------~l~--~~~~~~gp~LIVvP~ 114 (773)
.|..+....|++.|.+.=+.++..+..+...|+..+||+|||.|.--++. .+. ......++++|++|.
T Consensus 152 n~~~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~Pr 231 (675)
T PHA02653 152 NPEPFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPR 231 (675)
T ss_pred CCCccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcH
Confidence 34455557899988888888888888899999999999999987422221 111 101234589999998
Q ss_pred -cchHHHHHHHHhhc-----CCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEcccc
Q 004103 115 -AVLPNWINEFSTWA-----PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGH 188 (773)
Q Consensus 115 -sll~qW~~E~~k~~-----p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH 188 (773)
.++.|...++.+.. ++..+.+..|..... .... .....+++|.|..... . ...++.+|||||||
T Consensus 232 reLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~--~~~t---~~k~~~Ilv~T~~L~l---~--~L~~v~~VVIDEaH 301 (675)
T PHA02653 232 VALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDE--LINT---NPKPYGLVFSTHKLTL---N--KLFDYGTVIIDEVH 301 (675)
T ss_pred HHHHHHHHHHHHHHhCccccCCceEEEEECCcchH--Hhhc---ccCCCCEEEEeCcccc---c--ccccCCEEEccccc
Confidence 66677777776532 344555555544321 1110 0124578888854211 1 12357899999999
Q ss_pred ccCChhhHHHHHHHccc--cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHH
Q 004103 189 RLKNHECALAKTISGYQ--IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLI 266 (773)
Q Consensus 189 ~lkn~~s~~~~~l~~~~--~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~ 266 (773)
.+......+...++... ....+++|||+-. +...+ ..+|..+
T Consensus 302 Er~~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~l------------------~~~~~~p----------------- 345 (675)
T PHA02653 302 EHDQIGDIIIAVARKHIDKIRSLFLMTATLED-DRDRI------------------KEFFPNP----------------- 345 (675)
T ss_pred cCccchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHHH------------------HHHhcCC-----------------
Confidence 98554433333333332 2367999999622 12222 1111110
Q ss_pred HHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCC
Q 004103 267 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPY 346 (773)
Q Consensus 267 ~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~ 346 (773)
..+. .. ...+.+..+..+.....+.+...|-
T Consensus 346 ----------~~I~-I~---grt~~pV~~~yi~~~~~~~~~~~y~----------------------------------- 376 (675)
T PHA02653 346 ----------AFVH-IP---GGTLFPISEVYVKNKYNPKNKRAYI----------------------------------- 376 (675)
T ss_pred ----------cEEE-eC---CCcCCCeEEEEeecCcccccchhhh-----------------------------------
Confidence 0000 00 0001111121111111110000000
Q ss_pred cccccccchhhHHHHhhcchHHHHHHHHHHh-hhcCCcEEEEeecHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHH
Q 004103 347 LFVGEYNMWRKEEIIRASGKFELLDRLLPKL-RKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTL 423 (773)
Q Consensus 347 l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l-~~~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~ 423 (773)
...|...+ ..+... ...+..+|||+.....++.+...|... ++.+..+||+++.. ++.
T Consensus 377 ----------------~~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~ 437 (675)
T PHA02653 377 ----------------EEEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEI 437 (675)
T ss_pred ----------------HHHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHH
Confidence 00011111 222222 124568999999999999999999877 79999999999964 567
Q ss_pred HHhh-cCCCCCcEEEEEecccccccCCcccCCeeEEeC---CC---------CChhhHHHHhhhhhhcCCcCeEEEEEEE
Q 004103 424 LKQF-NAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFD---SD---------WNPQMDQQAEDRAHRIGQKKEVRVFVLV 490 (773)
Q Consensus 424 i~~F-n~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D---~~---------wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi 490 (773)
+++| +++.. -+|+||+.+++|||++++++||.++ .+ .+...+.||.||++|. ++-.+|+|.
T Consensus 438 l~~ff~~gk~---kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLy 511 (675)
T PHA02653 438 LEKVYSSKNP---SIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFY 511 (675)
T ss_pred HHHHhccCce---eEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEE
Confidence 7787 45443 3799999999999999999999997 22 2667899999999997 468889999
Q ss_pred eCCCH
Q 004103 491 SVGSI 495 (773)
Q Consensus 491 ~~~ti 495 (773)
++...
T Consensus 512 t~~~~ 516 (675)
T PHA02653 512 DLDLL 516 (675)
T ss_pred CHHHh
Confidence 98765
No 82
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.82 E-value=4.3e-18 Score=187.51 Aligned_cols=85 Identities=18% Similarity=0.197 Sum_probs=72.0
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhCC--CeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeE
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLND--FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 457 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~g--~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI 457 (773)
.+.++||||+....++.+...|...| +.+..++|.++..+|.+.. ... +|++|+++++|||++.. .||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~~---iLVaTdv~~rGiDi~~~-~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QFD---ILLGTSTVDVGVDFKRD-WLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cCC---EEEEecHHhcccCCCCc-eEE
Confidence 57799999999999999999998764 6788999999999987653 223 89999999999999864 666
Q ss_pred EeCCCCChhhHHHHhhhhh
Q 004103 458 IFDSDWNPQMDQQAEDRAH 476 (773)
Q Consensus 458 ~~D~~wNp~~~~Qa~gRa~ 476 (773)
++ +-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 678999999999975
No 83
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.82 E-value=5.2e-19 Score=201.07 Aligned_cols=356 Identities=16% Similarity=0.216 Sum_probs=221.3
Q ss_pred CcCCCCchHHHHHHHHHHHHhhcCCCC-eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhh
Q 004103 50 LLQGGELRAYQLEGLQWMLSLFNNNLN-GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 50 ~l~~~~LrpyQ~~gv~~l~~~~~~~~~-gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~ 127 (773)
......+|+||..+++.++..+.++.+ .+|+..||+|||.+||+++..|+... ..+++|+++-. +|+.|-..+|.++
T Consensus 160 ~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~-~~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 160 IDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSG-WVKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred ccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcc-hhheeeEEechHHHHHHHHHHHHHh
Confidence 334568999999999999998766654 68899999999999999999998874 44589999986 8889999999999
Q ss_pred cCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH-------HhhcCeeEEEEccccccCChhhHHHHH
Q 004103 128 APSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY-------LKKVQWIYMIVDEGHRLKNHECALAKT 200 (773)
Q Consensus 128 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~-------l~~~~~~~vIiDEaH~lkn~~s~~~~~ 200 (773)
.|......+...... ...+.|+|+||+++...... +..-.|++||||||||- -.+..+.
T Consensus 239 ~P~~~~~n~i~~~~~-----------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---i~~~~~~ 304 (875)
T COG4096 239 LPFGTKMNKIEDKKG-----------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---IYSEWSS 304 (875)
T ss_pred CCCccceeeeecccC-----------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---HHhhhHH
Confidence 998665544322211 03578999999999875332 33346999999999994 2233334
Q ss_pred HHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhh
Q 004103 201 ISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 280 (773)
Q Consensus 201 l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lR 280 (773)
+..|-...+++|||||-..--..-+.+++ +.|... .
T Consensus 305 I~dYFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~---------------------------Y 340 (875)
T COG4096 305 ILDYFDAATQGLTATPKETIDRSTYGFFN-----------------GEPTYA---------------------------Y 340 (875)
T ss_pred HHHHHHHHHHhhccCcccccccccccccC-----------------CCccee---------------------------e
Confidence 54555556777799996532222222221 111110 0
Q ss_pred hhhhHHhh-c-CCCce-eEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhh
Q 004103 281 RKKDEVEK-Y-LPGKS-QVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK 357 (773)
Q Consensus 281 R~k~dv~~-~-LP~k~-e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~ 357 (773)
.++.-|.+ . .|++. ...+.++...+ .|....+ .. .+..-...+ -...+.....
T Consensus 341 sleeAV~DGfLvpy~vi~i~~~~~~~G~---~~~~~se-----------re--------k~~g~~i~~--dd~~~~~~d~ 396 (875)
T COG4096 341 SLEEAVEDGFLVPYKVIRIDTDFDLDGW---KPDAGSE-----------RE--------KLQGEAIDE--DDQNFEARDF 396 (875)
T ss_pred cHHHHhhccccCCCCceEEeeeccccCc---CcCccch-----------hh--------hhhccccCc--cccccccccc
Confidence 01111111 0 22221 11222221100 0000000 00 000000000 0000000000
Q ss_pred HHHHhhcchHHHHHHHHHHhhhc---C---CcEEEEeecHHHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHh
Q 004103 358 EEIIRASGKFELLDRLLPKLRKS---G---HRVLLFSQMTRLMDILEIYLKLN-----DFKFLRLDGSTKTEERGTLLKQ 426 (773)
Q Consensus 358 ~~l~~~s~K~~~L~~ll~~l~~~---g---~kvLIFsq~~~~ld~L~~~L~~~-----g~~~~~i~G~~~~~eR~~~i~~ 426 (773)
+..+......+.+++.+..+... | .|.||||....+++.|...|... |-=+..|+|... +-+..|+.
T Consensus 397 dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~ 474 (875)
T COG4096 397 DRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDN 474 (875)
T ss_pred chhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHH
Confidence 11111223344555656555443 3 59999999999999999998654 333567888665 44567888
Q ss_pred hcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhc-------CCcCe-EEEEEEEe
Q 004103 427 FNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI-------GQKKE-VRVFVLVS 491 (773)
Q Consensus 427 Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~Ri-------GQ~k~-V~V~rLi~ 491 (773)
|-. ..++..|.+|.+.+..|+|.+.+-.+|++-.-.+-..+.|.+||+-|+ ||.|. ..|+.++-
T Consensus 475 f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~ 546 (875)
T COG4096 475 FID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVD 546 (875)
T ss_pred HHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhhh
Confidence 876 444556899999999999999999999999999999999999999995 34444 67776654
No 84
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=9.8e-18 Score=192.85 Aligned_cols=130 Identities=17% Similarity=0.267 Sum_probs=105.1
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
...|...|.+++..+...+.++||||......+.+...|...|+++..+||... +|+..+..|...... ++|+|+
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEcc
Confidence 355889999999887777889999999999999999999999999999999866 455555555543333 899999
Q ss_pred cccccCCcc---cCC-----eeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHH
Q 004103 443 AGGLGLNLQ---TAD-----TVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILER 502 (773)
Q Consensus 443 agg~GLNL~---~ad-----~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~ 502 (773)
.+|+|+|+. .+. +||+||.|-|+..|.|++||++|.|..-.+. .|++ .|+.++.+
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~is---~eD~l~~~ 592 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AILS---LEDDLLQS 592 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEec---hhHHHHHh
Confidence 999999998 444 9999999999999999999999999764443 3333 35555543
No 85
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=4.2e-19 Score=184.28 Aligned_cols=305 Identities=17% Similarity=0.223 Sum_probs=196.6
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHH---HhhcCC
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEF---STWAPS 130 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~---~k~~p~ 130 (773)
.+...|..++.-|+. +.+.|-|-....|+|||......+...........-++.++|+ .+..|-.+-+ -+|. .
T Consensus 112 kPskIQe~aLPlll~--~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ 188 (477)
T KOG0332|consen 112 KPSKIQETALPLLLA--EPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-E 188 (477)
T ss_pred CcchHHHhhcchhhc--CCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce-e
Confidence 344455555555443 3344556678899999965433222222211222234666898 6666654444 4454 2
Q ss_pred ce-EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhc---CeeEEEEccccccCChhh---HHHHHHHc
Q 004103 131 IA-AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKV---QWIYMIVDEGHRLKNHEC---ALAKTISG 203 (773)
Q Consensus 131 ~~-v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~---~~~~vIiDEaH~lkn~~s---~~~~~l~~ 203 (773)
+. .+++.|++..|... -.-+|+|.|+..+......|+.+ +...+|+|||..+-+... ........
T Consensus 189 ita~yair~sk~~rG~~--------i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~ 260 (477)
T KOG0332|consen 189 LTASYAIRGSKAKRGNK--------LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRS 260 (477)
T ss_pred eeEEEEecCcccccCCc--------chhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhh
Confidence 22 33444553332211 23469999999998876665544 567899999999876542 22233334
Q ss_pred cc-cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhh
Q 004103 204 YQ-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 282 (773)
Q Consensus 204 ~~-~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~ 282 (773)
++ ....++.|||-. .....|...+.. --.+.++||.
T Consensus 261 lP~~~QllLFSATf~-------------------e~V~~Fa~kivp------------------------n~n~i~Lk~e 297 (477)
T KOG0332|consen 261 LPRNQQLLLFSATFV-------------------EKVAAFALKIVP------------------------NANVIILKRE 297 (477)
T ss_pred cCCcceEEeeechhH-------------------HHHHHHHHHhcC------------------------CCceeeeehh
Confidence 43 667788899831 111112111100 0011222221
Q ss_pred hhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHh
Q 004103 283 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIR 362 (773)
Q Consensus 283 k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~ 362 (773)
++ .|++..+..+.|+ .
T Consensus 298 --el--~L~~IkQlyv~C~------------------------------------------------------------~ 313 (477)
T KOG0332|consen 298 --EL--ALDNIKQLYVLCA------------------------------------------------------------C 313 (477)
T ss_pred --hc--cccchhhheeecc------------------------------------------------------------c
Confidence 11 1333333333333 1
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
...|+++|..+.-.+ . -...||||+...++.+|...|...|+.+..+||.+..++|..++++|+.|... +||+|.
T Consensus 314 ~~~K~~~l~~lyg~~-t-igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTn 388 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLL-T-IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK---VLITTN 388 (477)
T ss_pred hhhHHHHHHHHHhhh-h-hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce---EEEEec
Confidence 234677777744332 2 23789999999999999999999999999999999999999999999999887 899999
Q ss_pred cccccCCcccCCeeEEeCCC------CChhhHHHHhhhhhhcCCcC
Q 004103 443 AGGLGLNLQTADTVIIFDSD------WNPQMDQQAEDRAHRIGQKK 482 (773)
Q Consensus 443 agg~GLNL~~ad~VI~~D~~------wNp~~~~Qa~gRa~RiGQ~k 482 (773)
+.++|||.+.++.||+||+| -.+..|++|+||++|.|.+-
T Consensus 389 V~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG 434 (477)
T KOG0332|consen 389 VCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG 434 (477)
T ss_pred hhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc
Confidence 99999999999999999998 35789999999999999654
No 86
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=187.89 Aligned_cols=316 Identities=19% Similarity=0.195 Sum_probs=215.6
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHH-HHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT-IALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-- 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~a-iali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p-- 129 (773)
-+|.|-|.-+|..-+ -++.+-++...|++|||+++ +|-+..++.. .+++|.+||. .+.+|-.++|..-+.
T Consensus 215 ~eLlPVQ~laVe~GL---LeG~nllVVSaTasGKTLIgElAGi~~~l~~---g~KmlfLvPLVALANQKy~dF~~rYs~L 288 (830)
T COG1202 215 EELLPVQVLAVEAGL---LEGENLLVVSATASGKTLIGELAGIPRLLSG---GKKMLFLVPLVALANQKYEDFKERYSKL 288 (830)
T ss_pred ceecchhhhhhhhcc---ccCCceEEEeccCCCcchHHHhhCcHHHHhC---CCeEEEEehhHHhhcchHHHHHHHhhcc
Confidence 379999999987533 26888899999999999986 5555555543 4689999999 555666777876553
Q ss_pred CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH-HhhcCeeEEEEccccccCCh--hhH---HHHHHHc
Q 004103 130 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY-LKKVQWIYMIVDEGHRLKNH--ECA---LAKTISG 203 (773)
Q Consensus 130 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~-l~~~~~~~vIiDEaH~lkn~--~s~---~~~~l~~ 203 (773)
++.+.+-.|...-+..-.........+.||+|.||+-+---... -..-+...|||||.|.+... +.. +...++.
T Consensus 289 glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~ 368 (830)
T COG1202 289 GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRY 368 (830)
T ss_pred cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHH
Confidence 34444555544332221111112236789999999977332111 11125689999999999652 222 3333333
Q ss_pred c-ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhh
Q 004103 204 Y-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 282 (773)
Q Consensus 204 ~-~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~ 282 (773)
+ +....+.|||| -.|+.|+...|+.-.-
T Consensus 369 l~~~AQ~i~LSAT--VgNp~elA~~l~a~lV------------------------------------------------- 397 (830)
T COG1202 369 LFPGAQFIYLSAT--VGNPEELAKKLGAKLV------------------------------------------------- 397 (830)
T ss_pred hCCCCeEEEEEee--cCChHHHHHHhCCeeE-------------------------------------------------
Confidence 3 55778999999 4666776554432100
Q ss_pred hhHHhhcCC-CceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHH
Q 004103 283 KDEVEKYLP-GKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 361 (773)
Q Consensus 283 k~dv~~~LP-~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~ 361 (773)
....-| |...+.+.|.=
T Consensus 398 ---~y~~RPVplErHlvf~~~----------------------------------------------------------- 415 (830)
T COG1202 398 ---LYDERPVPLERHLVFARN----------------------------------------------------------- 415 (830)
T ss_pred ---eecCCCCChhHeeeeecC-----------------------------------------------------------
Confidence 000012 12223333321
Q ss_pred hhcchHHHHHHHHHHhh----hcC--CcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcE
Q 004103 362 RASGKFELLDRLLPKLR----KSG--HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 435 (773)
Q Consensus 362 ~~s~K~~~L~~ll~~l~----~~g--~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~ 435 (773)
.+.|...+.++.+.-. ..| ..+|||+.++.-...|+++|..+|++...+|++++..+|..+-..|.++...
T Consensus 416 -e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~-- 492 (830)
T COG1202 416 -ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELA-- 492 (830)
T ss_pred -chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcc--
Confidence 1224444444443321 112 4799999999999999999999999999999999999999999999998877
Q ss_pred EEEEecccccccCCcccCCeeEE----eCCCC-ChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 436 MFLLSTRAGGLGLNLQTADTVII----FDSDW-NPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 436 v~LlSt~agg~GLNL~~ad~VI~----~D~~w-Np~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
.+++|.|+|-|+|+++. .||+ +...| +|+.+.|..|||+|.+-...-.||.++-.|
T Consensus 493 -~VVTTAAL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 493 -AVVTTAALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred -eEeehhhhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 78999999999998754 4544 55567 999999999999999988888888888775
No 87
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.81 E-value=1.9e-18 Score=199.65 Aligned_cols=118 Identities=18% Similarity=0.206 Sum_probs=106.4
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 443 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a 443 (773)
..|+.++.+.+..+...|.+|||||.+....+.+..+|...|+++..++|. ..+|+..+..|..+... ++|+|+.
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~---VtIATnm 462 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA---VTIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce---EEEEecc
Confidence 458888888888888899999999999999999999999999999999998 77899999999765554 8999999
Q ss_pred ccccCCccc-------CCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEE
Q 004103 444 GGLGLNLQT-------ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRV 486 (773)
Q Consensus 444 gg~GLNL~~-------ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V 486 (773)
+|+|+|+.. .-+||.++.|-|+..+.|+.||++|.|..-....
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 999999988 5699999999999999999999999998865443
No 88
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.80 E-value=7e-17 Score=166.54 Aligned_cols=347 Identities=17% Similarity=0.178 Sum_probs=226.8
Q ss_pred cccCCCCcccccccchhhHHhhhhcccccCCCCccCCCCCcCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHH
Q 004103 11 KKQWLCPMKFLLSFSSAIVLEWQNLTRSFILPQVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQ 90 (773)
Q Consensus 11 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~P~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~ 90 (773)
.+...|+.|..+.--......|--. ....+.....-.+|+|.|+|..+.+.+++.+.+....|+-.-+|+|||-+
T Consensus 58 ~~~~YCr~Cl~mgRv~sd~~Ly~~~-----~~~fp~~s~L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM 132 (441)
T COG4098 58 CGCLYCRNCLMMGRVRSDQKLYYWK-----PYAFPKKSVLQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM 132 (441)
T ss_pred cceEeehhhhhcccccccceeeecC-----CcCCCccceeeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh
Confidence 3456676666555444333332221 11111222233468999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHH
Q 004103 91 TIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMR 169 (773)
Q Consensus 91 aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~ 169 (773)
....+.+.+..+ +.+.|..|- .++-.-...++.-|++..+...+|..+.. ....++|+|-..+.+
T Consensus 133 if~~i~~al~~G---~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~-----------fr~plvVaTtHQLlr 198 (441)
T COG4098 133 IFQGIEQALNQG---GRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSY-----------FRAPLVVATTHQLLR 198 (441)
T ss_pred hHHHHHHHHhcC---CeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchh-----------ccccEEEEehHHHHH
Confidence 888888777653 588999997 88888888899888888888888776543 223466666555555
Q ss_pred hHHHHhhcCeeEEEEccccccC-ChhhHHHHHHH-cc-ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHh
Q 004103 170 DRQYLKKVQWIYMIVDEGHRLK-NHECALAKTIS-GY-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWF 246 (773)
Q Consensus 170 ~~~~l~~~~~~~vIiDEaH~lk-n~~s~~~~~l~-~~-~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f 246 (773)
-.. .||++||||++-+- ..+-.+..++. +. .....++|||||-..=..++
T Consensus 199 Fk~-----aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~---------------------- 251 (441)
T COG4098 199 FKQ-----AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTKKLERKI---------------------- 251 (441)
T ss_pred HHh-----hccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChHHHHHHh----------------------
Confidence 332 58999999999872 12333444442 22 45678999999942111111
Q ss_pred cccccccCCccCChHHHHHHHHHHHhhhhhh-hhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCC
Q 004103 247 NAPFKDRGQVALTDEEQLLIIRRLHHVIRPF-ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT 325 (773)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~-~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~ 325 (773)
++.-+++. +-+|.- ...||-. ..+++..
T Consensus 252 -----------------------~~g~~~~~klp~RfH---~~pLpvP--kf~w~~~----------------------- 280 (441)
T COG4098 252 -----------------------LKGNLRILKLPARFH---GKPLPVP--KFVWIGN----------------------- 280 (441)
T ss_pred -----------------------hhCCeeEeecchhhc---CCCCCCC--ceEEecc-----------------------
Confidence 00000000 001100 0112211 1122110
Q ss_pred CccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHH-HHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC
Q 004103 326 GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFE-LLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN 404 (773)
Q Consensus 326 ~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~-~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~ 404 (773)
.... + .-.|+. .|.+.|++...+|..++||.....+++.+...|+..
T Consensus 281 -----~~k~--------------------------l-~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~ 328 (441)
T COG4098 281 -----WNKK--------------------------L-QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKK 328 (441)
T ss_pred -----HHHH--------------------------h-hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhh
Confidence 0000 0 112222 567888888889999999999999999999999532
Q ss_pred -C-CeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCC--CChhhHHHHhhhhhhcCC
Q 004103 405 -D-FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSD--WNPQMDQQAEDRAHRIGQ 480 (773)
Q Consensus 405 -g-~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~--wNp~~~~Qa~gRa~RiGQ 480 (773)
+ .....++... ..|.+.+.+|++|..+ +|++|..+.+|+.++.+|+.|+-.-. ++-+..+|..||++|--.
T Consensus 329 ~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~---lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~ 403 (441)
T COG4098 329 LPKETIASVHSED--QHRKEKVEAFRDGKIT---LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLE 403 (441)
T ss_pred CCccceeeeeccC--ccHHHHHHHHHcCceE---EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCc
Confidence 2 2334455433 4799999999998876 89999999999999999999885444 899999999999999655
Q ss_pred cCeEEEEEEEe
Q 004103 481 KKEVRVFVLVS 491 (773)
Q Consensus 481 ~k~V~V~rLi~ 491 (773)
.-.-.|+.|-.
T Consensus 404 ~PtGdv~FFH~ 414 (441)
T COG4098 404 RPTGDVLFFHY 414 (441)
T ss_pred CCCCcEEEEec
Confidence 44444554443
No 89
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.80 E-value=1.8e-17 Score=196.09 Aligned_cols=359 Identities=20% Similarity=0.181 Sum_probs=198.2
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~ 132 (773)
..|+++|.+++..+.... .+...+|..+||+|||...+.++...+.. .+.+||++|. .+..|+.+.|.+.++ ..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARFG-AP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 579999999999887533 34557899999999999988777766654 3479999999 888999999998874 56
Q ss_pred EEEecCChh--HHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCC--hhh------HHHHHHH
Q 004103 133 AVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN--HEC------ALAKTIS 202 (773)
Q Consensus 133 v~~~~g~~~--~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn--~~s------~~~~~l~ 202 (773)
+.+++|... ++...+..... +..+|+|+|+..+. +.-.++.+|||||+|...- ... .+.....
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~--g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra 290 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKR--GEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRA 290 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--CCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHh
Confidence 667766533 33333332222 56899999987653 2233678999999998632 111 1111112
Q ss_pred ccccceEEEecCCCCCCCHHHHHH-hhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhh
Q 004103 203 GYQIQRRLLLTGTPIQNSLQELWS-LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 281 (773)
Q Consensus 203 ~~~~~~rllLTgTP~~n~~~el~~-lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR 281 (773)
.......+++||||....+..... -+.++.. -+|
T Consensus 291 ~~~~~~~il~SATps~~s~~~~~~g~~~~~~l---------------------------------------------~~r 325 (679)
T PRK05580 291 KLENIPVVLGSATPSLESLANAQQGRYRLLRL---------------------------------------------TKR 325 (679)
T ss_pred hccCCCEEEEcCCCCHHHHHHHhccceeEEEe---------------------------------------------ccc
Confidence 335567889999995332221100 0000000 000
Q ss_pred hhhHHhhcCCCceeEEEEecCCHHH---------HHHHHHHH---Hhccc--ccccCCCccchHHHHHHHHHHHhCCCCc
Q 004103 282 KKDEVEKYLPGKSQVILKCDMSAWQ---------KVYYQQVT---DVGRV--GLDTGTGKSKSLQNLSMQLRKCCNHPYL 347 (773)
Q Consensus 282 ~k~dv~~~LP~k~e~~v~~~~s~~q---------~~~Y~~i~---~~~~~--~~~~~~~~~~~~~~~~~~Lrk~~~hP~l 347 (773)
. ....+|. +..++|.... ..+++.+. +.+.. .+-+..|-... -....|.+.
T Consensus 326 ~---~~~~~p~----v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~------~~C~~Cg~~-- 390 (679)
T PRK05580 326 A---GGARLPE----VEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPF------LLCRDCGWV-- 390 (679)
T ss_pred c---ccCCCCe----EEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCc------eEhhhCcCc--
Confidence 0 0001221 1111221100 01111111 11000 00000000000 001111110
Q ss_pred ccccccchh------hHH-HHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC--CCeEEEEcCCCC--
Q 004103 348 FVGEYNMWR------KEE-IIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTK-- 416 (773)
Q Consensus 348 ~~~~~~~~~------~~~-l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~-- 416 (773)
..-..-... ... ....++....+-..-+. =|. ..|..+....+.+++.|... +.++.++||++.
T Consensus 391 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~---Cg~--~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~ 465 (679)
T PRK05580 391 AECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPE---CGS--TDLVPVGPGTERLEEELAELFPEARILRIDRDTTRR 465 (679)
T ss_pred cCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCC---CcC--CeeEEeeccHHHHHHHHHHhCCCCcEEEEecccccc
Confidence 000000000 000 00000000000000000 011 12333334566777777665 889999999986
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCC---CCh---------hhHHHHhhhhhhcCCcCeE
Q 004103 417 TEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSD---WNP---------QMDQQAEDRAHRIGQKKEV 484 (773)
Q Consensus 417 ~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~---wNp---------~~~~Qa~gRa~RiGQ~k~V 484 (773)
.+++++++++|.+++.+ +|++|+..+.|+|++.++.|+++|.| ..| +.+.|+.||++|.|....|
T Consensus 466 ~~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~v 542 (679)
T PRK05580 466 KGALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEV 542 (679)
T ss_pred chhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEE
Confidence 46799999999998877 89999999999999999999988776 223 6799999999998877777
Q ss_pred EEEEEEeC
Q 004103 485 RVFVLVSV 492 (773)
Q Consensus 485 ~V~rLi~~ 492 (773)
.+...-.+
T Consensus 543 iiqT~~p~ 550 (679)
T PRK05580 543 LIQTYHPE 550 (679)
T ss_pred EEEeCCCC
Confidence 66544433
No 90
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.80 E-value=1.4e-17 Score=199.53 Aligned_cols=333 Identities=18% Similarity=0.187 Sum_probs=226.7
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc---C-
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---P- 129 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~---p- 129 (773)
.|+.||.++++.+. ++.+.|+..+||+|||...+..|....-.. ....+|+|-|+ .|..+..+.|.+|. |
T Consensus 70 ~lY~HQ~~A~~~~~----~G~~vvVtTgTgSGKTe~FllPIld~~l~~-~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIR----EGRNVVVTTGTGSGKTESFLLPILDHLLRD-PSARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHH----CCCCEEEECCCCCchhHHHHHHHHHHHhhC-cCccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 59999999998887 689999999999999999765554444432 33488999998 66677888888876 3
Q ss_pred CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHh------HHHHhhcCeeEEEEccccccCCh-hhHHHHHHH
Q 004103 130 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD------RQYLKKVQWIYMIVDEGHRLKNH-ECALAKTIS 202 (773)
Q Consensus 130 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~------~~~l~~~~~~~vIiDEaH~lkn~-~s~~~~~l~ 202 (773)
.+.+..|+|........ .+.. ..++|++|+|+++.-. ...+..-++.+|||||+|-+++. +|.+.-.++
T Consensus 145 ~v~~~~y~Gdt~~~~r~--~~~~--~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llR 220 (851)
T COG1205 145 KVTFGRYTGDTPPEERR--AIIR--NPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLR 220 (851)
T ss_pred cceeeeecCCCChHHHH--HHHh--CCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHH
Confidence 46788888865432221 1111 6899999999998651 12222335899999999999874 444444444
Q ss_pred cc--------ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhh
Q 004103 203 GY--------QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVI 274 (773)
Q Consensus 203 ~~--------~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L 274 (773)
++ .....++.|||- .++.|.. .+.++..+...
T Consensus 221 RL~~~~~~~~~~~q~i~~SAT~--~np~e~~-----------------~~l~~~~f~~~--------------------- 260 (851)
T COG1205 221 RLLRRLRRYGSPLQIICTSATL--ANPGEFA-----------------EELFGRDFEVP--------------------- 260 (851)
T ss_pred HHHHHHhccCCCceEEEEeccc--cChHHHH-----------------HHhcCCcceee---------------------
Confidence 44 244568889982 2222221 11111111110
Q ss_pred hhhhhhhhhhHHhhcCCCceeEEEE-ecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCccccccc
Q 004103 275 RPFILRRKKDEVEKYLPGKSQVILK-CDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYN 353 (773)
Q Consensus 275 ~p~~lRR~k~dv~~~LP~k~e~~v~-~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~ 353 (773)
..+..-|....+.+. -+........
T Consensus 261 ----------v~~~g~~~~~~~~~~~~p~~~~~~~~-------------------------------------------- 286 (851)
T COG1205 261 ----------VDEDGSPRGLRYFVRREPPIRELAES-------------------------------------------- 286 (851)
T ss_pred ----------ccCCCCCCCceEEEEeCCcchhhhhh--------------------------------------------
Confidence 000011222222221 1111100000
Q ss_pred chhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHH----HHHHhCC----CeEEEEcCCCCHHHHHHHHH
Q 004103 354 MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILE----IYLKLND----FKFLRLDGSTKTEERGTLLK 425 (773)
Q Consensus 354 ~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~----~~L~~~g----~~~~~i~G~~~~~eR~~~i~ 425 (773)
-...+...+..++..+...+-++|+|+.+...+..+. ..+...+ ..+..+.|++..++|..+..
T Consensus 287 --------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~ 358 (851)
T COG1205 287 --------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEA 358 (851)
T ss_pred --------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHH
Confidence 0123556667777888888999999999999999886 3344445 67889999999999999999
Q ss_pred hhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCC-ChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHH
Q 004103 426 QFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 503 (773)
Q Consensus 426 ~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~w-Np~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~ 503 (773)
.|+.++.. ++++|.|.-.|+++.+.+.||.+..|- +-..+.|+.||++|-+|.-. ++.....+.++..+...-
T Consensus 359 ~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l--~~~v~~~~~~d~yy~~~p 432 (851)
T COG1205 359 EFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESL--VLVVLRSDPLDSYYLRHP 432 (851)
T ss_pred HHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCce--EEEEeCCCccchhhhhCc
Confidence 99999887 899999999999999999999999998 78999999999999994433 333333777777776543
No 91
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.80 E-value=6.5e-18 Score=199.67 Aligned_cols=318 Identities=24% Similarity=0.232 Sum_probs=205.0
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC-Cce
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SIA 132 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p-~~~ 132 (773)
+|+|.|.+++...+. .+.|.|+|.+||+|||++|+.+|...+... .++++.|||. +|..+-.++|.+|.. +++
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 899999999975553 378999999999999999977666555543 5699999998 888889999995542 789
Q ss_pred EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHH--hhcCeeEEEEccccccCCh-hh-----HHHHHHHcc
Q 004103 133 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL--KKVQWIYMIVDEGHRLKNH-EC-----ALAKTISGY 204 (773)
Q Consensus 133 v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l--~~~~~~~vIiDEaH~lkn~-~s-----~~~~~l~~~ 204 (773)
|..+.|..+...... ..++|+|+|||.+-.-.... --...++|||||+|.+... .. -.++....-
T Consensus 106 V~~~TgD~~~~~~~l-------~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~ 178 (766)
T COG1204 106 VGISTGDYDLDDERL-------ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN 178 (766)
T ss_pred EEEecCCcccchhhh-------ccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhC
Confidence 999999876443211 68899999999885422211 1125789999999999664 22 222222222
Q ss_pred ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhh
Q 004103 205 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 284 (773)
Q Consensus 205 ~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~ 284 (773)
..-+.++||||- ++..++..|.+..... ...+|.-++|.
T Consensus 179 ~~~rivgLSATl--------------------pN~~evA~wL~a~~~~-------------------~~~rp~~l~~~-- 217 (766)
T COG1204 179 ELIRIVGLSATL--------------------PNAEEVADWLNAKLVE-------------------SDWRPVPLRRG-- 217 (766)
T ss_pred cceEEEEEeeec--------------------CCHHHHHHHhCCcccc-------------------cCCCCcccccC--
Confidence 235789999992 3444455555432110 01111111111
Q ss_pred HHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhc
Q 004103 285 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 364 (773)
Q Consensus 285 dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s 364 (773)
.|.... ..... +..+ ....
T Consensus 218 -----v~~~~~-~~~~~----------------------~~~k---------------------------------~~~~ 236 (766)
T COG1204 218 -----VPYVGA-FLGAD----------------------GKKK---------------------------------TWPL 236 (766)
T ss_pred -----CccceE-EEEec----------------------Cccc---------------------------------cccc
Confidence 110000 00000 0000 0011
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHh----C---------------------------------CCe
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL----N---------------------------------DFK 407 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~----~---------------------------------g~~ 407 (773)
.+...+..++....+.|..+|||++++......+..|.. . -..
T Consensus 237 ~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~G 316 (766)
T COG1204 237 LIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRG 316 (766)
T ss_pred cchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhC
Confidence 123344455555567788999999988655444444431 0 012
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEE-----eC-----CCCChhhHHHHhhhhhh
Q 004103 408 FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII-----FD-----SDWNPQMDQQAEDRAHR 477 (773)
Q Consensus 408 ~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~-----~D-----~~wNp~~~~Qa~gRa~R 477 (773)
+...|.+++.++|+-+-+.|+.|..+ +|+||...+.|+||| |++||+ || -+-++..+.|..|||+|
T Consensus 317 vafHhAGL~~~~R~~vE~~Fr~g~ik---Vlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGR 392 (766)
T COG1204 317 VAFHHAGLPREDRQLVEDAFRKGKIK---VLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGR 392 (766)
T ss_pred ccccccCCCHHHHHHHHHHHhcCCce---EEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCC
Confidence 45678899999999999999998877 899999999999987 455555 45 34567889999999999
Q ss_pred cCCcCeEEEEEEE
Q 004103 478 IGQKKEVRVFVLV 490 (773)
Q Consensus 478 iGQ~k~V~V~rLi 490 (773)
.|=..--..+.+.
T Consensus 393 Pg~d~~G~~~i~~ 405 (766)
T COG1204 393 PGYDDYGEAIILA 405 (766)
T ss_pred CCcCCCCcEEEEe
Confidence 9865443444444
No 92
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1.1e-18 Score=191.44 Aligned_cols=311 Identities=19% Similarity=0.236 Sum_probs=205.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHH-HHHHHHHhc----CCCCCEEEEeCC-cchHHHHHHHHhh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIA-LIAYLLENK----GVTGPHVIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aia-li~~l~~~~----~~~gp~LIVvP~-sll~qW~~E~~k~ 127 (773)
..+.|-|..++..++ .+.+++.|.++|+|||+..+. ++..|.... ...-..+|+.|. .++.|-..|+.++
T Consensus 157 ~~Pt~iq~~aipvfl----~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~ 232 (593)
T KOG0344|consen 157 DEPTPIQKQAIPVFL----EKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKY 232 (593)
T ss_pred CCCCcccchhhhhhh----cccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhc
Confidence 467788999998888 588899999999999988544 344444433 222367999998 8889999999988
Q ss_pred c--CC--ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH----HhhcCeeEEEEccccccCChhh---H
Q 004103 128 A--PS--IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY----LKKVQWIYMIVDEGHRLKNHEC---A 196 (773)
Q Consensus 128 ~--p~--~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~----l~~~~~~~vIiDEaH~lkn~~s---~ 196 (773)
. +. ..+..+......... .... ....+++++.|+-.+...... +.-....++|+|||.++.++.. +
T Consensus 233 ~~~~~t~~~a~~~~~~~~~~qk--~a~~-~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Q 309 (593)
T KOG0344|consen 233 SIDEGTSLRAAQFSKPAYPSQK--PAFL-SDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQ 309 (593)
T ss_pred CCCCCCchhhhhcccccchhhc--cchh-HHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHH
Confidence 7 33 222222222111110 1111 115688999999998765443 3334566799999999987622 1
Q ss_pred HHHHHHcc--ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhh
Q 004103 197 LAKTISGY--QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVI 274 (773)
Q Consensus 197 ~~~~l~~~--~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L 274 (773)
+...+... +.-++=++|||- + ....+| ..++
T Consensus 310 la~I~sac~s~~i~~a~FSat~--~--------------------~~VEE~-------------------------~~~i 342 (593)
T KOG0344|consen 310 LADIYSACQSPDIRVALFSATI--S--------------------VYVEEW-------------------------AELI 342 (593)
T ss_pred HHHHHHHhcCcchhhhhhhccc--c--------------------HHHHHH-------------------------HHHh
Confidence 22222221 222223334331 0 001111 1111
Q ss_pred hhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccc
Q 004103 275 RPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNM 354 (773)
Q Consensus 275 ~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~ 354 (773)
..+.+ .+.+...+.+ ...+...|.-| +
T Consensus 343 ~~~~~-----------------~vivg~~~sa------------------------~~~V~QelvF~--------g---- 369 (593)
T KOG0344|consen 343 KSDLK-----------------RVIVGLRNSA------------------------NETVDQELVFC--------G---- 369 (593)
T ss_pred hccce-----------------eEEEecchhH------------------------hhhhhhhheee--------e----
Confidence 11111 1111111111 00111111111 1
Q ss_pred hhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHH-HhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCC
Q 004103 355 WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL-KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSP 433 (773)
Q Consensus 355 ~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L-~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~ 433 (773)
...+|+-++..++....++ .+|||.|+.+.+..|...| ..-++.+..|||..++.+|.+.+++|+.|...
T Consensus 370 -------se~~K~lA~rq~v~~g~~P--P~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw 440 (593)
T KOG0344|consen 370 -------SEKGKLLALRQLVASGFKP--PVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIW 440 (593)
T ss_pred -------cchhHHHHHHHHHhccCCC--CeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCee
Confidence 2356788888888776444 8999999999999999999 78899999999999999999999999998765
Q ss_pred cEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCe
Q 004103 434 YFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 483 (773)
Q Consensus 434 ~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~ 483 (773)
+|++|+..++|||+.+++.||+||.|-+-..|++++||++|.|+...
T Consensus 441 ---vLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~ 487 (593)
T KOG0344|consen 441 ---VLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGK 487 (593)
T ss_pred ---EEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcc
Confidence 79999999999999999999999999999999999999999998754
No 93
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.79 E-value=1.5e-17 Score=205.35 Aligned_cols=278 Identities=16% Similarity=0.221 Sum_probs=179.3
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCC-
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS- 130 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~- 130 (773)
+.+|.|+|..++..++ .+.+.++..+||+|||..++.++.++... ...+|||+|+ .|+.|+..++.+++..
T Consensus 76 g~~p~~iQ~~~i~~il----~G~d~vi~ApTGsGKT~f~l~~~~~l~~~---g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVL----RGDSFAIIAPTGVGKTTFGLAMSLFLAKK---GKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred CCCCcHHHHHHHHHHh----CCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 4589999999998887 57888999999999998666555554332 3579999999 8889999999988753
Q ss_pred -ce---EEEecCChhH--HHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhH--------
Q 004103 131 -IA---AVVYDGRPDE--RKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECA-------- 196 (773)
Q Consensus 131 -~~---v~~~~g~~~~--r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~-------- 196 (773)
+. +.+++|.... +......+.. +.++|+|+|++.+.+....+.. +++++||||||++......
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~~~l~~--~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~~k~vd~il~ll 225 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFMERIEN--GDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLKASKNVDKLLKLL 225 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhhccccHHHHHHHc
Confidence 22 2345554332 2222222222 5699999999999887666654 7999999999998542111
Q ss_pred ------HHHHH----------------------Hccccce---EEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHH
Q 004103 197 ------LAKTI----------------------SGYQIQR---RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEW 245 (773)
Q Consensus 197 ------~~~~l----------------------~~~~~~~---rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~ 245 (773)
+..++ ..++... .++.|||+.+......+ +. ..++
T Consensus 226 GF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l--~r----~ll~-------- 291 (1171)
T TIGR01054 226 GFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL--FR----ELLG-------- 291 (1171)
T ss_pred CCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH--cc----cccc--------
Confidence 11111 1111111 13357774332211100 00 0000
Q ss_pred hcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCC
Q 004103 246 FNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT 325 (773)
Q Consensus 246 f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~ 325 (773)
|-+.+. ...+......
T Consensus 292 -------------------------------~~v~~~----~~~~r~I~~~----------------------------- 307 (1171)
T TIGR01054 292 -------------------------------FEVGGG----SDTLRNVVDV----------------------------- 307 (1171)
T ss_pred -------------------------------eEecCc----cccccceEEE-----------------------------
Confidence 000000 0000000000
Q ss_pred CccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecH---HHHHHHHHHHH
Q 004103 326 GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMT---RLMDILEIYLK 402 (773)
Q Consensus 326 ~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~---~~ld~L~~~L~ 402 (773)
|+ ....+...|.+++..+ +.++|||++.. ..++.|..+|.
T Consensus 308 --------------------~~--------------~~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~ 350 (1171)
T TIGR01054 308 --------------------YV--------------EDEDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLE 350 (1171)
T ss_pred --------------------EE--------------ecccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHH
Confidence 00 0011123445555543 56899999998 99999999999
Q ss_pred hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEe----cccccccCCccc-CCeeEEeCCC
Q 004103 403 LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS----TRAGGLGLNLQT-ADTVIIFDSD 462 (773)
Q Consensus 403 ~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlS----t~agg~GLNL~~-ad~VI~~D~~ 462 (773)
..|+++..+||+++ +..+++|.+|..+ +||+ |+++++|||++. +++||+||.|
T Consensus 351 ~~g~~a~~lhg~~~----~~~l~~Fr~G~~~---vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 351 NHGVKAVAYHATKP----KEDYEKFAEGEID---VLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred hCCceEEEEeCCCC----HHHHHHHHcCCCC---EEEEeccccCcccccCCCCccccEEEEECCC
Confidence 99999999999987 3789999998877 6777 589999999999 7999999998
No 94
>COG4889 Predicted helicase [General function prediction only]
Probab=99.79 E-value=8.6e-18 Score=188.93 Aligned_cols=362 Identities=19% Similarity=0.200 Sum_probs=195.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc--CC
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--PS 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~--p~ 130 (773)
.+|||||..++....+-+..+.+|=|...+|+|||++++-+...+.. ..+|.+||. +|+.|-.+|...-. +-
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~~ 234 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELDF 234 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCccc
Confidence 58999999999999999888888988888999999999988877765 378999999 89988655543321 22
Q ss_pred ceEEEecCChhHH------------------HHHHHHH--HhhcCCccEEEcCHHHHHHhHH--HHhhcCeeEEEEcccc
Q 004103 131 IAAVVYDGRPDER------------------KAMREEF--FSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGH 188 (773)
Q Consensus 131 ~~v~~~~g~~~~r------------------~~~~~~~--~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH 188 (773)
....|++..+-.| ..+...+ +....+.-||+.||+.+-.-.. ....-.|++||+||||
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH 314 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH 314 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh
Confidence 2333333322111 1111111 1112455699999999866433 3334589999999999
Q ss_pred ccCC------hhhHHHHHH--HccccceEEEecCCCCCC------CHHHHHHhhccccCCCCCChHhHHHHhcccccccC
Q 004103 189 RLKN------HECALAKTI--SGYQIQRRLLLTGTPIQN------SLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG 254 (773)
Q Consensus 189 ~lkn------~~s~~~~~l--~~~~~~~rllLTgTP~~n------~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~ 254 (773)
|-.+ ..+.+++.- ..+++..||.|||||--- +..+--+.|.-
T Consensus 315 RTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~S------------------------ 370 (1518)
T COG4889 315 RTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSS------------------------ 370 (1518)
T ss_pred ccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeec------------------------
Confidence 9744 223333332 344677899999999311 11111111100
Q ss_pred CccCChHHHHHHHHHHHhhhhhhhhhhhhhHHhh-cCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHH
Q 004103 255 QVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEK-YLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQN 333 (773)
Q Consensus 255 ~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~-~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~ 333 (773)
+.++.. .-..+|.+ ....-|+. -|.+....++.++-...+..+...+..-.........++.-+..+
T Consensus 371 ---MDDe~~--fGeef~rl-------~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wn 438 (1518)
T COG4889 371 ---MDDELT--FGEEFHRL-------GFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWN 438 (1518)
T ss_pred ---cchhhh--hchhhhcc-------cHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhh
Confidence 011000 00011110 00111111 145556666665533333332222211100000000000000000
Q ss_pred HHHHHHHHhCCCCcc-cccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEee-----------cHHHHHHHHHHH
Q 004103 334 LSMQLRKCCNHPYLF-VGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQ-----------MTRLMDILEIYL 401 (773)
Q Consensus 334 ~~~~Lrk~~~hP~l~-~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq-----------~~~~ld~L~~~L 401 (773)
-++.-...-+ |... ..+.. +-+|.|-||. |..+++.....|
T Consensus 439 Glakr~g~~n-~~~~~~~d~a--------------------------p~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~El 491 (1518)
T COG4889 439 GLAKRNGEDN-DLKNIKADTA--------------------------PMQRAIAFAKDIKTSKQIAESFETVVEAYDEEL 491 (1518)
T ss_pred hhhhhccccc-cccCCcCCch--------------------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 0000 00000 0012222222 222222222222
Q ss_pred H----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhh
Q 004103 402 K----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHR 477 (773)
Q Consensus 402 ~----~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~R 477 (773)
. ...+.+-.+||.|...+|...+..-+.-.+..+-+|-..+++++|+|+++.|.||+|||--+....+|+.||+.|
T Consensus 492 k~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMR 571 (1518)
T COG4889 492 KKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMR 571 (1518)
T ss_pred HhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHH
Confidence 2 224456779999999999666554443223333468889999999999999999999999999999999999999
Q ss_pred cCCcCe
Q 004103 478 IGQKKE 483 (773)
Q Consensus 478 iGQ~k~ 483 (773)
-...|.
T Consensus 572 Ka~gK~ 577 (1518)
T COG4889 572 KAKGKK 577 (1518)
T ss_pred hCcCCc
Confidence 876655
No 95
>PRK14701 reverse gyrase; Provisional
Probab=99.78 E-value=2.9e-17 Score=206.51 Aligned_cols=297 Identities=16% Similarity=0.239 Sum_probs=189.7
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-- 129 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p-- 129 (773)
|.+|+|.|..++..++ .+.+.++..+||+|||+..+.++..+.. ....+|||+|+ .|+.|....+..++.
T Consensus 77 G~~pt~iQ~~~i~~il----~G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 77 GFEFWSIQKTWAKRIL----RGKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 4579999999999888 5788899999999999854333333322 12378999999 888999999988764
Q ss_pred --CceEEEecCChhHHHH--HHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCCh----h-------
Q 004103 130 --SIAAVVYDGRPDERKA--MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNH----E------- 194 (773)
Q Consensus 130 --~~~v~~~~g~~~~r~~--~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~----~------- 194 (773)
++.+..++|....... ....+.. +.++|+|+|++.+......+...+++++||||||++... +
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~--g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~llG 227 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIEN--GDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQLLG 227 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhhcCC
Confidence 3556666665443322 2222222 578999999998877655444467899999999998431 1
Q ss_pred --hHHHH----HHH----------------------ccccce--EEEecCCCCCC-CHHHHHHhhccccCCCCCChHhHH
Q 004103 195 --CALAK----TIS----------------------GYQIQR--RLLLTGTPIQN-SLQELWSLLNFLLPTIFNSVENFE 243 (773)
Q Consensus 195 --s~~~~----~l~----------------------~~~~~~--rllLTgTP~~n-~~~el~~lL~~L~p~~~~~~~~f~ 243 (773)
..... .+. .++... .++.|||.-.. ....+ +
T Consensus 228 F~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l---~--------------- 289 (1638)
T PRK14701 228 FYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKL---Y--------------- 289 (1638)
T ss_pred ChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHH---h---------------
Confidence 11111 110 111112 24457765321 11111 0
Q ss_pred HHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhccccccc
Q 004103 244 EWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT 323 (773)
Q Consensus 244 ~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~ 323 (773)
+..+. |.+. .+ ...+.......+.++
T Consensus 290 ---------------------------~~~l~-f~v~---~~-~~~lr~i~~~yi~~~---------------------- 315 (1638)
T PRK14701 290 ---------------------------RELLG-FEVG---SG-RSALRNIVDVYLNPE---------------------- 315 (1638)
T ss_pred ---------------------------hcCeE-EEec---CC-CCCCCCcEEEEEECC----------------------
Confidence 00000 0000 00 000000000000000
Q ss_pred CCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHH---HHHHHHH
Q 004103 324 GTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRL---MDILEIY 400 (773)
Q Consensus 324 ~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~---ld~L~~~ 400 (773)
...| ..|.+++..+ +..+||||+.... ++.+..+
T Consensus 316 ---------------------------------------~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~ 352 (1638)
T PRK14701 316 ---------------------------------------KIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKY 352 (1638)
T ss_pred ---------------------------------------HHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHH
Confidence 0012 2455555544 5689999998764 5899999
Q ss_pred HHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEec----ccccccCCccc-CCeeEEeCCCC---ChhhHHHH-
Q 004103 401 LKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST----RAGGLGLNLQT-ADTVIIFDSDW---NPQMDQQA- 471 (773)
Q Consensus 401 L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt----~agg~GLNL~~-ad~VI~~D~~w---Np~~~~Qa- 471 (773)
|...|+++..+||+ |...+++|.+|+.+ +||+| +.+++|||++. +.+|||||.|- |...+.|.
T Consensus 353 L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~ 424 (1638)
T PRK14701 353 LLEDGFKIELVSAK-----NKKGFDLFEEGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTI 424 (1638)
T ss_pred HHHCCCeEEEecch-----HHHHHHHHHcCCCC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccch
Confidence 99999999999994 99999999999887 78888 47899999998 99999999997 66555554
Q ss_pred ------------hhhhhhcCCc
Q 004103 472 ------------EDRAHRIGQK 481 (773)
Q Consensus 472 ------------~gRa~RiGQ~ 481 (773)
.||++|-|..
T Consensus 425 ~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 425 YRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred hhhhcchHHHHHhhhhcccCCc
Confidence 4999998864
No 96
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=5.7e-17 Score=185.45 Aligned_cols=293 Identities=20% Similarity=0.187 Sum_probs=183.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCCh--hHHHHHHHHHHhhc
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRP--DERKAMREEFFSER 154 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~~--~~r~~~~~~~~~~~ 154 (773)
+|..+||+|||.+++.++.+.+.. .+.+||++|. ++..|+...|.+.++ ..+.++++.. .++...+.... .
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~~~~--~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWRKVK--N 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHHHHH--c
Confidence 356789999999998888777654 3478999999 888999999998874 4566666543 33433333332 2
Q ss_pred CCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccC--ChhhH------HHHHHHccccceEEEecCCCCCCCHHHHHH
Q 004103 155 GRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLK--NHECA------LAKTISGYQIQRRLLLTGTPIQNSLQELWS 226 (773)
Q Consensus 155 ~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lk--n~~s~------~~~~l~~~~~~~rllLTgTP~~n~~~el~~ 226 (773)
+..+|||+|...+.. .-.++++|||||.|... ..... +............+++||||... .++.
T Consensus 75 g~~~IVVGTrsalf~-----p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle---s~~~ 146 (505)
T TIGR00595 75 GEILVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE---SYHN 146 (505)
T ss_pred CCCCEEECChHHHcC-----cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH---HHHH
Confidence 678899999987632 23367999999999863 22111 22222344567789999999622 2211
Q ss_pred hhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHHh-hcCCCceeEEEEecCCHH
Q 004103 227 LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVE-KYLPGKSQVILKCDMSAW 305 (773)
Q Consensus 227 lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~-~~LP~k~e~~v~~~~s~~ 305 (773)
... + . +... .....+. ..+|. ..++ +|...
T Consensus 147 ~~~----g--------------------~------------------~~~~---~l~~r~~~~~~p~--v~vi--d~~~~ 177 (505)
T TIGR00595 147 AKQ----K--------------------A------------------YRLL---VLTRRVSGRKPPE--VKLI--DMRKE 177 (505)
T ss_pred Hhc----C--------------------C------------------eEEe---echhhhcCCCCCe--EEEE--ecccc
Confidence 110 0 0 0000 0000000 11221 1111 11110
Q ss_pred HHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEE
Q 004103 306 QKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVL 385 (773)
Q Consensus 306 q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvL 385 (773)
... +.=-..|.+.+.+..+.|+++|
T Consensus 178 ~~~-------------------------------------------------------~~ls~~l~~~i~~~l~~g~qvL 202 (505)
T TIGR00595 178 PRQ-------------------------------------------------------SFLSPELITAIEQTLAAGEQSI 202 (505)
T ss_pred ccc-------------------------------------------------------CCccHHHHHHHHHHHHcCCcEE
Confidence 000 0000122333333444566677
Q ss_pred EEeecH------------------------------------------------------------HHHHHHHHHHHhC-
Q 004103 386 LFSQMT------------------------------------------------------------RLMDILEIYLKLN- 404 (773)
Q Consensus 386 IFsq~~------------------------------------------------------------~~ld~L~~~L~~~- 404 (773)
||.+.+ .-.+.+++.|...
T Consensus 203 vflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f 282 (505)
T TIGR00595 203 LFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF 282 (505)
T ss_pred EEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC
Confidence 663321 1246777777665
Q ss_pred -CCeEEEEcCCCCHHHH--HHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCC---Ch---------hhHH
Q 004103 405 -DFKFLRLDGSTKTEER--GTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDW---NP---------QMDQ 469 (773)
Q Consensus 405 -g~~~~~i~G~~~~~eR--~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~w---Np---------~~~~ 469 (773)
+.++.++|+.++...+ .++++.|.+++.+ +||+|+..+.|+|++.++.|+++|.|- .| +.+.
T Consensus 283 p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~ 359 (505)
T TIGR00595 283 PGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLT 359 (505)
T ss_pred CCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHH
Confidence 7899999999887655 8999999998877 899999999999999999998877762 23 6789
Q ss_pred HHhhhhhhcCCcCeEEEEEEEe
Q 004103 470 QAEDRAHRIGQKKEVRVFVLVS 491 (773)
Q Consensus 470 Qa~gRa~RiGQ~k~V~V~rLi~ 491 (773)
|+.||++|.+....|.+..+-.
T Consensus 360 q~~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 360 QVAGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred HHHhccCCCCCCCEEEEEeCCC
Confidence 9999999988777776544433
No 97
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.77 E-value=4.2e-17 Score=172.58 Aligned_cols=311 Identities=20% Similarity=0.245 Sum_probs=208.7
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHH-HHHHHHHHHhcCC-----CCCEEEEeCC-cchHHHHHHHHhh
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT-IALIAYLLENKGV-----TGPHVIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~a-iali~~l~~~~~~-----~gp~LIVvP~-sll~qW~~E~~k~ 127 (773)
++.-.|..+|..++ .+.+.+.-.-||+|||... |-++..++..+.. .-..+|+||+ .++.|-+..+.+.
T Consensus 41 kpTlIQs~aIplaL----EgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL 116 (569)
T KOG0346|consen 41 KPTLIQSSAIPLAL----EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKL 116 (569)
T ss_pred Ccchhhhcccchhh----cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHH
Confidence 44556888888888 5777788899999999984 5556556554332 2246899998 7888888777664
Q ss_pred ---cC-CceEEEecCCh-hHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH---HhhcCeeEEEEccccccCChhh--HH
Q 004103 128 ---AP-SIAAVVYDGRP-DERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKNHEC--AL 197 (773)
Q Consensus 128 ---~p-~~~v~~~~g~~-~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~---l~~~~~~~vIiDEaH~lkn~~s--~~ 197 (773)
++ .++++-+..+. +.... .+.. ..++|||+|+..+.+.... ...-...++|+|||+-+-..+. .+
T Consensus 117 ~~~c~k~lr~~nl~s~~sdsv~~---~~L~--d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedl 191 (569)
T KOG0346|consen 117 VEYCSKDLRAINLASSMSDSVNS---VALM--DLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDL 191 (569)
T ss_pred HHHHHHhhhhhhhhcccchHHHH---HHHc--cCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHH
Confidence 44 44444444222 22111 1122 6789999999999876432 2233567899999999865432 34
Q ss_pred HHHHHccc-cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhh--
Q 004103 198 AKTISGYQ-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVI-- 274 (773)
Q Consensus 198 ~~~l~~~~-~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L-- 274 (773)
......++ .-..++||||-- .+ +..|.+++
T Consensus 192 k~l~~~LPr~~Q~~LmSATl~-dD----------------------------------------------v~~LKkL~l~ 224 (569)
T KOG0346|consen 192 KKLRSHLPRIYQCFLMSATLS-DD----------------------------------------------VQALKKLFLH 224 (569)
T ss_pred HHHHHhCCchhhheeehhhhh-hH----------------------------------------------HHHHHHHhcc
Confidence 44445553 334588899831 11 12222222
Q ss_pred hhhhhhhhhhHHhhcCC--C-ceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCccccc
Q 004103 275 RPFILRRKKDEVEKYLP--G-KSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGE 351 (773)
Q Consensus 275 ~p~~lRR~k~dv~~~LP--~-k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~ 351 (773)
.|+++.-...+ +| + ...+.+.|.
T Consensus 225 nPviLkl~e~e----l~~~dqL~Qy~v~cs-------------------------------------------------- 250 (569)
T KOG0346|consen 225 NPVILKLTEGE----LPNPDQLTQYQVKCS-------------------------------------------------- 250 (569)
T ss_pred CCeEEEecccc----CCCcccceEEEEEec--------------------------------------------------
Confidence 34443322222 22 1 123334433
Q ss_pred ccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCC
Q 004103 352 YNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPD 431 (773)
Q Consensus 352 ~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~ 431 (773)
.-.|+.++..+++--. -..|.|||.+..+..-.|.-+|..-|++.+.++|.++...|.-+|++||.|-
T Consensus 251 -----------e~DKflllyallKL~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~ 318 (569)
T KOG0346|consen 251 -----------EEDKFLLLYALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGL 318 (569)
T ss_pred -----------cchhHHHHHHHHHHHH-hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcc
Confidence 1124444444443211 2349999999999999999999999999999999999999999999999987
Q ss_pred CCcEEEEEecc--------------------------c---------ccccCCcccCCeeEEeCCCCChhhHHHHhhhhh
Q 004103 432 SPYFMFLLSTR--------------------------A---------GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAH 476 (773)
Q Consensus 432 ~~~~v~LlSt~--------------------------a---------gg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~ 476 (773)
.+ ++|+|+ + .++|||++.+++||+||.|-++..|++|+||..
T Consensus 319 Yd---ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTa 395 (569)
T KOG0346|consen 319 YD---IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTA 395 (569)
T ss_pred ee---EEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccc
Confidence 66 677777 1 247999999999999999999999999999999
Q ss_pred hcCCcCeEEEEEEEeC
Q 004103 477 RIGQKKEVRVFVLVSV 492 (773)
Q Consensus 477 RiGQ~k~V~V~rLi~~ 492 (773)
|-|.+-.+ .-|+.+
T Consensus 396 Rg~n~Gta--lSfv~P 409 (569)
T KOG0346|consen 396 RGNNKGTA--LSFVSP 409 (569)
T ss_pred cCCCCCce--EEEecc
Confidence 98866554 444544
No 98
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=5.4e-19 Score=179.83 Aligned_cols=312 Identities=18% Similarity=0.238 Sum_probs=211.1
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cch---HHHHHHHHhhcCC
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVL---PNWINEFSTWAPS 130 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll---~qW~~E~~k~~p~ 130 (773)
.+.|.|.+++.-++ .+.+.+.-.--|+|||-..+-.+...+......--.+|+||+ .+. +|-..++.+.. +
T Consensus 107 kPSPiQeesIPiaL----tGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~ 181 (459)
T KOG0326|consen 107 KPSPIQEESIPIAL----TGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-G 181 (459)
T ss_pred CCCCccccccceee----cchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-C
Confidence 67778888887666 244434447899999976443333333322223356899997 333 55677888877 4
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChhh--HHHHHHHcc-c
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHEC--ALAKTISGY-Q 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~s--~~~~~l~~~-~ 205 (773)
+.+.+-.|....+..+... ....+++|.|+..+..-... -...+...+|+|||+.+..... .+.+.+.-+ +
T Consensus 182 i~vmvttGGT~lrDDI~Rl----~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~ 257 (459)
T KOG0326|consen 182 IKVMVTTGGTSLRDDIMRL----NQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPK 257 (459)
T ss_pred eEEEEecCCcccccceeee----cCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCc
Confidence 8888888877766554322 26788999999998764321 1222567899999999976433 344445555 4
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhH
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 285 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~d 285 (773)
.+..++.|||- +. ....|.. |.+++-
T Consensus 258 ~rQillySATF-P~------------------tVk~Fm~-----------------------------------~~l~kP 283 (459)
T KOG0326|consen 258 ERQILLYSATF-PL------------------TVKGFMD-----------------------------------RHLKKP 283 (459)
T ss_pred cceeeEEeccc-ch------------------hHHHHHH-----------------------------------HhccCc
Confidence 55667888882 11 1222321 111110
Q ss_pred HhhcCCCceeEEEEecCCHHH-HHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhc
Q 004103 286 VEKYLPGKSQVILKCDMSAWQ-KVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 364 (773)
Q Consensus 286 v~~~LP~k~e~~v~~~~s~~q-~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s 364 (773)
-++.+.-+++..- .++|. .+..+
T Consensus 284 --------y~INLM~eLtl~GvtQyYa------------------------------------------------fV~e~ 307 (459)
T KOG0326|consen 284 --------YEINLMEELTLKGVTQYYA------------------------------------------------FVEER 307 (459)
T ss_pred --------ceeehhhhhhhcchhhhee------------------------------------------------eechh
Confidence 0000100011000 01111 11334
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
.|+.-|.-++.++.-. ..||||+++..+++|+......||....+|..|.++.|..+..+|.+|.-. .|++|+..
T Consensus 308 qKvhCLntLfskLqIN--QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~cr---nLVctDL~ 382 (459)
T KOG0326|consen 308 QKVHCLNTLFSKLQIN--QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCR---NLVCTDLF 382 (459)
T ss_pred hhhhhHHHHHHHhccc--ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccc---eeeehhhh
Confidence 5666677777776543 789999999999999999999999999999999999999999999997754 69999999
Q ss_pred cccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeC
Q 004103 445 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 492 (773)
Q Consensus 445 g~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~ 492 (773)
-+|||+|++++||+||.|-|+..|++|+||.+|.|-.- .-..|++-
T Consensus 383 TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG--lAInLity 428 (459)
T KOG0326|consen 383 TRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG--LAINLITY 428 (459)
T ss_pred hcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc--eEEEEEeh
Confidence 99999999999999999999999999999999999543 33455554
No 99
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.76 E-value=9.3e-17 Score=191.72 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=93.4
Q ss_pred CCcEEEEeecHHHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeE
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKL---NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 457 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~---~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI 457 (773)
+..+|||+.....++.+...|.. .++.++.+||+++.++|..+++.|.++..+ +|+||+.++.||+++++++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rk---VlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRK---VVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeE---EEEecchHhhcccccCceEEE
Confidence 56899999999999999999976 489999999999999999999999876544 799999999999999999999
Q ss_pred EeCCC----CChhh--------------HHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 458 IFDSD----WNPQM--------------DQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 458 ~~D~~----wNp~~--------------~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
.++.+ +||.. +.||.||++|. ++-.+|+|+++.
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 99876 45554 78999999987 577889998864
No 100
>PRK09694 helicase Cas3; Provisional
Probab=99.75 E-value=3.3e-16 Score=187.06 Aligned_cols=336 Identities=18% Similarity=0.161 Sum_probs=193.9
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHh----h
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFST----W 127 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k----~ 127 (773)
+..++|+|..+..- ..++...||-++||+|||-.|+.++..+... +..+.+++..|+ .+.++-...+.+ .
T Consensus 284 ~~~p~p~Q~~~~~~----~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 284 GYQPRQLQTLVDAL----PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-GLADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCCChHHHHHHHhh----ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 46899999976432 1245556899999999999999988877764 334578999998 677777777654 3
Q ss_pred cCCceEEEecCChhHHHHH-------------------HHHHHhh----cCCccEEEcCHHHHHHh-----HHHHhh--c
Q 004103 128 APSIAAVVYDGRPDERKAM-------------------REEFFSE----RGRFNVLITHYDLIMRD-----RQYLKK--V 177 (773)
Q Consensus 128 ~p~~~v~~~~g~~~~r~~~-------------------~~~~~~~----~~~~~VvItTye~l~~~-----~~~l~~--~ 177 (773)
++...+.+.+|........ ...++.. .--.+|+|+|.+.+... ...+.. +
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 4455677777654311100 0122211 01257999999888742 122222 2
Q ss_pred CeeEEEEccccccCChhhHH-HHHHHcc--ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccC
Q 004103 178 QWIYMIVDEGHRLKNHECAL-AKTISGY--QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG 254 (773)
Q Consensus 178 ~~~~vIiDEaH~lkn~~s~~-~~~l~~~--~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~ 254 (773)
.-.+|||||+|-+-.....+ ...+..+ .....++||||+-..-..+|...+..-.+ +. ....| |.
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~-~~-~~~~Y------Pl---- 506 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDP-VE-LSSAY------PL---- 506 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccc-cc-ccccc------cc----
Confidence 23589999999984432322 2233222 23568999999844333333221110000 00 00000 00
Q ss_pred CccCChHHHHHHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHH
Q 004103 255 QVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNL 334 (773)
Q Consensus 255 ~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~ 334 (773)
++.... . ....+-+... ...+|.. ..+.+...
T Consensus 507 ---vt~~~~------~--~~~~~~~~~~----~~~~~~~--~~v~v~~~------------------------------- 538 (878)
T PRK09694 507 ---ITWRGV------N--GAQRFDLSAH----PEQLPAR--FTIQLEPI------------------------------- 538 (878)
T ss_pred ---cccccc------c--cceeeecccc----ccccCcc--eEEEEEee-------------------------------
Confidence 000000 0 0000000000 0000110 11110000
Q ss_pred HHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCC---CeEEEE
Q 004103 335 SMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLND---FKFLRL 411 (773)
Q Consensus 335 ~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g---~~~~~i 411 (773)
.. -.......++..++..+ ..|+++|||++.+..+..+...|...+ .++..+
T Consensus 539 ------------~~------------~~~~~~~~~l~~i~~~~-~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~ll 593 (878)
T PRK09694 539 ------------CL------------ADMLPDLTLLQRMIAAA-NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLF 593 (878)
T ss_pred ------------cc------------ccccCHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEE
Confidence 00 00011122333333333 468899999999999999999998764 689999
Q ss_pred cCCCCHHHH----HHHHHhh-cCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCc
Q 004103 412 DGSTKTEER----GTLLKQF-NAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQK 481 (773)
Q Consensus 412 ~G~~~~~eR----~~~i~~F-n~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~ 481 (773)
||.++..+| .++++.| +++..+...+||+|++...|||+ ++|.+|....| ...++||+||+||.|.+
T Consensus 594 Hsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 594 HARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 999999999 4678889 44443223579999999999999 68988887665 57899999999999874
No 101
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.74 E-value=5.6e-17 Score=193.07 Aligned_cols=313 Identities=17% Similarity=0.185 Sum_probs=226.1
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~ 132 (773)
...||-|.++|...+ .+..+++-.+||.||++.- .+...-..|-+|||.|+ +|+......+... ++.
T Consensus 263 ~~FR~~Q~eaI~~~l----~Gkd~fvlmpTG~GKSLCY------QlPA~l~~gitvVISPL~SLm~DQv~~L~~~--~I~ 330 (941)
T KOG0351|consen 263 KGFRPNQLEAINATL----SGKDCFVLMPTGGGKSLCY------QLPALLLGGVTVVISPLISLMQDQVTHLSKK--GIP 330 (941)
T ss_pred ccCChhHHHHHHHHH----cCCceEEEeecCCceeeEe------eccccccCCceEEeccHHHHHHHHHHhhhhc--Ccc
Confidence 479999999998666 6888999999999999653 22222223478999998 8887777666333 344
Q ss_pred EEEecCC--hhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHH---hh-cC---eeEEEEccccccCChh-------hH
Q 004103 133 AVVYDGR--PDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL---KK-VQ---WIYMIVDEGHRLKNHE-------CA 196 (773)
Q Consensus 133 v~~~~g~--~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l---~~-~~---~~~vIiDEaH~lkn~~-------s~ 196 (773)
...+.+. ..++..+.+.+......++++..|+|.+......+ .. .. ..++||||||+...+. .+
T Consensus 331 a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~ 410 (941)
T KOG0351|consen 331 ACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKR 410 (941)
T ss_pred eeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHH
Confidence 4444443 34455566666654458899999999998754332 22 22 6799999999986532 23
Q ss_pred HHHHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhh
Q 004103 197 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 276 (773)
Q Consensus 197 ~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p 276 (773)
+.....++.....+.||||--..--.|+...|++-.|.+|.+. |+
T Consensus 411 l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------fn----------------------------- 455 (941)
T KOG0351|consen 411 LGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------FN----------------------------- 455 (941)
T ss_pred HHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc------CC-----------------------------
Confidence 4444466677788999999877777888888887777654332 11
Q ss_pred hhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchh
Q 004103 277 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 356 (773)
Q Consensus 277 ~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~ 356 (773)
++.-...|..+.+ ...+..+
T Consensus 456 --------------R~NL~yeV~~k~~------------------------~~~~~~~---------------------- 475 (941)
T KOG0351|consen 456 --------------RPNLKYEVSPKTD------------------------KDALLDI---------------------- 475 (941)
T ss_pred --------------CCCceEEEEeccC------------------------ccchHHH----------------------
Confidence 1111111111110 0001111
Q ss_pred hHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEE
Q 004103 357 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 436 (773)
Q Consensus 357 ~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v 436 (773)
...+ +....+...||||.....++.+...|...|+....+|++++..+|+.+...|..+...
T Consensus 476 --------------~~~~-~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~--- 537 (941)
T KOG0351|consen 476 --------------LEES-KLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIR--- 537 (941)
T ss_pred --------------HHHh-hhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCe---
Confidence 1111 1224577999999999999999999999999999999999999999999999987754
Q ss_pred EEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEe
Q 004103 437 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVS 491 (773)
Q Consensus 437 ~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~ 491 (773)
++++|=|.|.|||-+++..||+|..|-+..-|.|..|||+|-|+...+..|+=..
T Consensus 538 VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 538 VIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred EEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 7999999999999999999999999999999999999999999998876665433
No 102
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.74 E-value=1.7e-16 Score=189.83 Aligned_cols=109 Identities=18% Similarity=0.165 Sum_probs=93.5
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCee
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKL---NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 456 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~---~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~V 456 (773)
.+..+|||+.....++.+.+.|.. .++.++.+||+++.++|..++..|.+|..+ +|+||+.+..||+++++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rk---VlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRK---VVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeE---EEEecchHHhcccccCceEE
Confidence 357899999999999999999986 588999999999999999999999876544 89999999999999999999
Q ss_pred EEeCCC----CCh--------------hhHHHHhhhhhhcCCcCeEEEEEEEeCCC
Q 004103 457 IIFDSD----WNP--------------QMDQQAEDRAHRIGQKKEVRVFVLVSVGS 494 (773)
Q Consensus 457 I~~D~~----wNp--------------~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~t 494 (773)
|.++.+ ++| ..+.||.||++|. .+-.+|+|+++..
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~ 340 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQ 340 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHH
Confidence 997765 332 3688999999886 4788999988643
No 103
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.72 E-value=2.5e-16 Score=163.27 Aligned_cols=317 Identities=15% Similarity=0.180 Sum_probs=236.6
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~ 132 (773)
.++||.|+++++..+ .+...+|..++|-||++..- +...-..|-.|||||. +++....-.++...-+..
T Consensus 93 ekfrplq~~ain~~m----a~ed~~lil~tgggkslcyq------lpal~adg~alvi~plislmedqil~lkqlgi~as 162 (695)
T KOG0353|consen 93 EKFRPLQLAAINATM----AGEDAFLILPTGGGKSLCYQ------LPALCADGFALVICPLISLMEDQILQLKQLGIDAS 162 (695)
T ss_pred HhcChhHHHHhhhhh----ccCceEEEEeCCCccchhhh------hhHHhcCCceEeechhHHHHHHHHHHHHHhCcchh
Confidence 378999999999877 47888999999999996531 1111224678999999 899989889998887777
Q ss_pred EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhh-------cCeeEEEEccccccCC------hhhHHHH
Q 004103 133 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKK-------VQWIYMIVDEGHRLKN------HECALAK 199 (773)
Q Consensus 133 v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~-------~~~~~vIiDEaH~lkn------~~s~~~~ 199 (773)
.+....++.+.+.....+.+....|.++..|++.+.+...++.+ -.|.+|-|||+|+... +..+...
T Consensus 163 ~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ 242 (695)
T KOG0353|consen 163 MLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALG 242 (695)
T ss_pred hccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHH
Confidence 77777788888888877777778899999999999876555433 3688999999999853 3344445
Q ss_pred HH-HccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhh
Q 004103 200 TI-SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 278 (773)
Q Consensus 200 ~l-~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~ 278 (773)
.+ +.|+....++||||...+-+.|...+|.+-.. -.|..-|++
T Consensus 243 ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~------~tf~a~fnr------------------------------ 286 (695)
T KOG0353|consen 243 ILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAA------FTFRAGFNR------------------------------ 286 (695)
T ss_pred HHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhh------heeecccCC------------------------------
Confidence 55 77889999999999988888877666643211 112222222
Q ss_pred hhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhH
Q 004103 279 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKE 358 (773)
Q Consensus 279 lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~ 358 (773)
|.....++.-|-++ +
T Consensus 287 ------------~nl~yev~qkp~n~-----------------------------------------------------d 301 (695)
T KOG0353|consen 287 ------------PNLKYEVRQKPGNE-----------------------------------------------------D 301 (695)
T ss_pred ------------CCceeEeeeCCCCh-----------------------------------------------------H
Confidence 11111111111000 0
Q ss_pred HHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 004103 359 EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 438 (773)
Q Consensus 359 ~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~L 438 (773)
+ -.+-+.+++..- -.|..-||||-...-.+.+...|..+|+....+|..+.+++|.-+-..+-++... ++
T Consensus 302 d------~~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiq---vi 371 (695)
T KOG0353|consen 302 D------CIEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQ---VI 371 (695)
T ss_pred H------HHHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceE---EE
Confidence 0 011112222211 2477889999999999999999999999999999999999999999999887766 78
Q ss_pred EecccccccCCcccCCeeEEeCCCCChhhHHH-------------------------------------------Hhhhh
Q 004103 439 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQ-------------------------------------------AEDRA 475 (773)
Q Consensus 439 lSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Q-------------------------------------------a~gRa 475 (773)
++|-|.|.|||-+++..||+...|-+...|.| --||+
T Consensus 372 vatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgra 451 (695)
T KOG0353|consen 372 VATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRA 451 (695)
T ss_pred EEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhcccc
Confidence 99999999999999999999999999999999 56889
Q ss_pred hhcCCcCeEEEEEEEe
Q 004103 476 HRIGQKKEVRVFVLVS 491 (773)
Q Consensus 476 ~RiGQ~k~V~V~rLi~ 491 (773)
+|-|++-.+..|+=.+
T Consensus 452 grd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 452 GRDDMKADCILYYGFA 467 (695)
T ss_pred ccCCCcccEEEEechH
Confidence 9999998877776543
No 104
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.72 E-value=8.5e-17 Score=187.09 Aligned_cols=317 Identities=18% Similarity=0.263 Sum_probs=208.5
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHH-HHHHHHHHhcC---CCCCE-EEEeCC-cchHHHHHHHHhh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENKG---VTGPH-VIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai-ali~~l~~~~~---~~gp~-LIVvP~-sll~qW~~E~~k~ 127 (773)
.+++|.|-.++..++ .+..+|-...+|+|||+..+ -.+.+....+. ..||+ ||++|+ .+..|-.+++.+|
T Consensus 386 ~k~~~IQ~qAiP~Im----sGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf 461 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAIM----SGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKF 461 (997)
T ss_pred CCCcchhhhhcchhc----cCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 478999999998888 48888999999999999873 33444333221 22564 889999 7777766666555
Q ss_pred c--CCce-EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHh----HH-HHhhcCeeEEEEccccccCC--hhhHH
Q 004103 128 A--PSIA-AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD----RQ-YLKKVQWIYMIVDEGHRLKN--HECAL 197 (773)
Q Consensus 128 ~--p~~~-v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~----~~-~l~~~~~~~vIiDEaH~lkn--~~s~~ 197 (773)
. -++. +.+|.|..... ++.. +. ....|+|.|+..++.- .. .....+..++|+|||++|-. .....
T Consensus 462 ~k~l~ir~v~vygg~~~~~-qiae-lk---Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~ 536 (997)
T KOG0334|consen 462 LKLLGIRVVCVYGGSGISQ-QIAE-LK---RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQI 536 (997)
T ss_pred HhhcCceEEEecCCccHHH-HHHH-Hh---cCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCccc
Confidence 4 2344 44555544332 2222 11 2378999998877542 11 22223566999999999832 22233
Q ss_pred HHHHHccccceE-EEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhh
Q 004103 198 AKTISGYQIQRR-LLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 276 (773)
Q Consensus 198 ~~~l~~~~~~~r-llLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p 276 (773)
..++..+...+- ++.|||-. .
T Consensus 537 ~~Ii~nlrpdrQtvlfSatfp-r--------------------------------------------------------- 558 (997)
T KOG0334|consen 537 TRILQNLRPDRQTVLFSATFP-R--------------------------------------------------------- 558 (997)
T ss_pred chHHhhcchhhhhhhhhhhhh-H---------------------------------------------------------
Confidence 334444432222 33344310 0
Q ss_pred hhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchh
Q 004103 277 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 356 (773)
Q Consensus 277 ~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~ 356 (773)
.+..+...|.. +| .. .++... .-+|..+. +.-.+|.
T Consensus 559 -~m~~la~~vl~-~P-ve-iiv~~~-----svV~k~V~----------------------q~v~V~~------------- 594 (997)
T KOG0334|consen 559 -SMEALARKVLK-KP-VE-IIVGGR-----SVVCKEVT----------------------QVVRVCA------------- 594 (997)
T ss_pred -HHHHHHHHhhc-CC-ee-EEEccc-----eeEeccce----------------------EEEEEec-------------
Confidence 01111112222 12 11 111100 00000000 0000000
Q ss_pred hHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEE
Q 004103 357 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 436 (773)
Q Consensus 357 ~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v 436 (773)
....|+..|..+|..... ..++||||+...-++.|..-|...||....+||+.+..+|...+++|+++...
T Consensus 595 -----~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~--- 665 (997)
T KOG0334|consen 595 -----IENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVN--- 665 (997)
T ss_pred -----CchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCce---
Confidence 135588888999888766 66999999999999999999999999999999999999999999999987765
Q ss_pred EEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeC
Q 004103 437 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 492 (773)
Q Consensus 437 ~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~ 492 (773)
+|++|..++.|||......||+||.+---..|++|.||++|.|.+- .-|.|+++
T Consensus 666 LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 666 LLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred EEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 8999999999999999999999999988888999999999999877 55566666
No 105
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.72 E-value=4.5e-17 Score=152.44 Aligned_cols=120 Identities=32% Similarity=0.454 Sum_probs=111.6
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
.|+..+..++.+....+.++|||+.....++.+..+|...+.++..++|+++..+|..+++.|+.+... +|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~---ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIV---VLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCc---EEEEcChh
Confidence 688889999988776788999999999999999999998999999999999999999999999987744 78899999
Q ss_pred cccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEE
Q 004103 445 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 487 (773)
Q Consensus 445 g~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~ 487 (773)
++|+|++.+++||+++++|++..+.|++||++|.||...|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998777664
No 106
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.72 E-value=4.5e-17 Score=161.67 Aligned_cols=156 Identities=26% Similarity=0.401 Sum_probs=109.6
Q ss_pred CCchHHHHHHHHHHHHhhcCC---CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC
Q 004103 54 GELRAYQLEGLQWMLSLFNNN---LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~---~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p 129 (773)
.+|||||.+++..++..+... .++++..+||+|||++++.++..+.. ++|||||. +++.||..+|..+.+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 369999999999999877654 77899999999999999988887765 89999999 899999999987775
Q ss_pred CceEEEecCC---hhH------HHHHHHHHHhhcCCccEEEcCHHHHHHhHHH-------------HhhcCeeEEEEccc
Q 004103 130 SIAAVVYDGR---PDE------RKAMREEFFSERGRFNVLITHYDLIMRDRQY-------------LKKVQWIYMIVDEG 187 (773)
Q Consensus 130 ~~~v~~~~g~---~~~------r~~~~~~~~~~~~~~~VvItTye~l~~~~~~-------------l~~~~~~~vIiDEa 187 (773)
.......... ... ...............++++++|+.+...... +....+++||+|||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred hhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 5433322110 000 0000000111225778999999999876432 23347899999999
Q ss_pred cccCChhhHHHHHHHccccceEEEecCCCC
Q 004103 188 HRLKNHECALAKTISGYQIQRRLLLTGTPI 217 (773)
Q Consensus 188 H~lkn~~s~~~~~l~~~~~~~rllLTgTP~ 217 (773)
|++.+... ++.+..+...++|+|||||.
T Consensus 156 H~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 99865332 55554488999999999995
No 107
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.71 E-value=1.6e-15 Score=179.80 Aligned_cols=308 Identities=18% Similarity=0.255 Sum_probs=211.9
Q ss_pred CCchHHHHHHHHHHHHhhcCCC--CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchH-HHHHHHHhhcCC
Q 004103 54 GELRAYQLEGLQWMLSLFNNNL--NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP-NWINEFSTWAPS 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~--~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~-qW~~E~~k~~p~ 130 (773)
.+-.|-|+.+++.+.+-+..+. .-++|.++|.|||=+|+-++-..... .+-+.|+||+.++. |-.+.|..-+.+
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GKQVAvLVPTTlLA~QHy~tFkeRF~~ 669 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GKQVAVLVPTTLLAQQHYETFKERFAG 669 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CCeEEEEcccHHhHHHHHHHHHHHhcC
Confidence 5778899999999988766555 35999999999999987554433332 25789999996664 456667665544
Q ss_pred ceEEE--e--cCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc-c
Q 004103 131 IAAVV--Y--DGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-Q 205 (773)
Q Consensus 131 ~~v~~--~--~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~-~ 205 (773)
+.|-+ . .-+..+.+.+.+.+.. +..||||.|+..+.++..+- +..+|||||=||+.=. --..++.+ .
T Consensus 670 fPV~I~~LSRF~s~kE~~~il~~la~--G~vDIvIGTHrLL~kdv~Fk---dLGLlIIDEEqRFGVk---~KEkLK~Lr~ 741 (1139)
T COG1197 670 FPVRIEVLSRFRSAKEQKEILKGLAE--GKVDIVIGTHRLLSKDVKFK---DLGLLIIDEEQRFGVK---HKEKLKELRA 741 (1139)
T ss_pred CCeeEEEecccCCHHHHHHHHHHHhc--CCccEEEechHhhCCCcEEe---cCCeEEEechhhcCcc---HHHHHHHHhc
Confidence 44333 2 2344555555555544 89999999999987765432 3469999999998432 23344444 3
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhH
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 285 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~d 285 (773)
.-.+|-|||||++-.+.-- |... +.| +
T Consensus 742 ~VDvLTLSATPIPRTL~Ms--m~Gi-------------------------------------Rdl-------------S- 768 (1139)
T COG1197 742 NVDVLTLSATPIPRTLNMS--LSGI-------------------------------------RDL-------------S- 768 (1139)
T ss_pred cCcEEEeeCCCCcchHHHH--Hhcc-------------------------------------hhh-------------h-
Confidence 5678999999998765421 1100 000 0
Q ss_pred HhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcc
Q 004103 286 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 365 (773)
Q Consensus 286 v~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~ 365 (773)
+.. -||.....|..-..+. ++
T Consensus 769 vI~-TPP~~R~pV~T~V~~~-----------------------------------------------d~----------- 789 (1139)
T COG1197 769 VIA-TPPEDRLPVKTFVSEY-----------------------------------------------DD----------- 789 (1139)
T ss_pred hcc-CCCCCCcceEEEEecC-----------------------------------------------Ch-----------
Confidence 111 2333322222110000 00
Q ss_pred hHHHH-HHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 366 KFELL-DRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 366 K~~~L-~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
..+ ..++.++. .|.+|-...+.++.+..+...|... ..++...||.|+..+-+.++..|.+++.+ +|+||.
T Consensus 790 --~~ireAI~REl~-RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d---VLv~TT 863 (1139)
T COG1197 790 --LLIREAILRELL-RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD---VLVCTT 863 (1139)
T ss_pred --HHHHHHHHHHHh-cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC---EEEEee
Confidence 011 22333333 4567777788888888888888765 67899999999999999999999999888 899999
Q ss_pred cccccCCcccCCeeEEeCCC-CChhhHHHHhhhhhhcCCcCeEEEEEEEeC
Q 004103 443 AGGLGLNLQTADTVIIFDSD-WNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 492 (773)
Q Consensus 443 agg~GLNL~~ad~VI~~D~~-wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~ 492 (773)
....|||+++|||+|+-+.+ +--++.-|--||++|-. +.-+-|.|+..
T Consensus 864 IIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 864 IIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred eeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc--ceEEEEEeecC
Confidence 99999999999999999888 46789999999999943 44666666664
No 108
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=2.9e-15 Score=175.69 Aligned_cols=394 Identities=15% Similarity=0.180 Sum_probs=223.8
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHH---HHHHHHhhc
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPN---WINEFSTWA 128 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~q---W~~E~~k~~ 128 (773)
|..+++-|+-|.--| ..|-|.-..||.|||+++...+...... ...++||+|+ .|..| |...+.+++
T Consensus 80 g~~~ydvQliGg~~L------h~G~Iaem~TGeGKTL~a~Lpa~~~al~---G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 80 GLRHFDVQLIGGMVL------HEGNIAEMRTGEGKTLVATLPAYLNAIS---GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred CCCcchHHHhhhhhh------ccCccccccCCCCchHHHHHHHHHHHhc---CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 456666777665433 2344777899999999875444433222 1368999999 55544 666666665
Q ss_pred CCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHH----HHhHHHH-----hhcCeeEEEEccccccCChhhHHHH
Q 004103 129 PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI----MRDRQYL-----KKVQWIYMIVDEGHRLKNHECALAK 199 (773)
Q Consensus 129 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l----~~~~~~l-----~~~~~~~vIiDEaH~lkn~~s~~~~ 199 (773)
++.+.++.|......... . -.++|+++|...+ .++.-.+ -...+.++||||||.+.=.
T Consensus 151 -GLtv~~i~gg~~~~~r~~-~-----y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLID------ 217 (896)
T PRK13104 151 -GLTVGVIYPDMSHKEKQE-A-----YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILID------ 217 (896)
T ss_pred -CceEEEEeCCCCHHHHHH-H-----hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhh------
Confidence 466666666533222211 1 2579999999887 2322111 1137889999999987321
Q ss_pred HHHccccceEEEecCCCCCCCHHHHHHhhccc----cCCCCCChHhHHHHhcccccccCCccCChHH-------------
Q 004103 200 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFL----LPTIFNSVENFEEWFNAPFKDRGQVALTDEE------------- 262 (773)
Q Consensus 200 ~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L----~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~------------- 262 (773)
.+.--|++||.+-. ..++|..++-+ .+..-... ...|.. ......+.+++..
T Consensus 218 -----eArtPLIISg~~~~--~~~~y~~~~~~v~~l~~~~~~~~---~~dy~i-dek~~~v~Lte~G~~~~e~~~~~~~i 286 (896)
T PRK13104 218 -----EARTPLIISGAAED--SSELYIKINSLIPQLKKQEEEGD---EGDYTI-DEKQKQAHLTDAGHLHIEELLTKAKL 286 (896)
T ss_pred -----ccCCceeeeCCCcc--chHHHHHHHHHHHHHHhccccCC---CCCEEE-EcCCCceEEchHHHHHHHHHHHhCCc
Confidence 23345778886532 24455444322 22100000 000000 0011122222221
Q ss_pred -----------HHHHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCC-------HHHHHHHHHHHHhcccccccC
Q 004103 263 -----------QLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMS-------AWQKVYYQQVTDVGRVGLDTG 324 (773)
Q Consensus 263 -----------~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s-------~~q~~~Y~~i~~~~~~~~~~~ 324 (773)
.....+.+...|+-..+-..-.+.. +-+....+|- +.| .++.-+-+.+.....+.+...
T Consensus 287 l~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYi--V~dg~V~iVD-e~TGR~m~grr~s~GLHQaiEaKE~v~i~~e 363 (896)
T PRK13104 287 LDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYI--VKDNQVVIVD-EHTGRTMPGRRWSEGLHQAVEAKEGVPIQNE 363 (896)
T ss_pred cCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceE--EECCEEEEEE-CCCCCcCCCCCcChHHHHHHHHHcCCCCCCC
Confidence 1111222222222221111100100 0011111111 111 122333333333322222211
Q ss_pred CC--ccchHHHH-----------------HHHHHHHhCCCCcccccccchhh---H--HHHhhcchHHHHHHHHHHhhhc
Q 004103 325 TG--KSKSLQNL-----------------SMQLRKCCNHPYLFVGEYNMWRK---E--EIIRASGKFELLDRLLPKLRKS 380 (773)
Q Consensus 325 ~~--~~~~~~~~-----------------~~~Lrk~~~hP~l~~~~~~~~~~---~--~l~~~s~K~~~L~~ll~~l~~~ 380 (773)
.. .+-+++|+ ...+.++-+-+.+..+...+... + -......|+.++.+.+..+.+.
T Consensus 364 ~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~ 443 (896)
T PRK13104 364 NQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVR 443 (896)
T ss_pred ceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhC
Confidence 10 11122222 23344444444333332221110 0 0123456899999999999999
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccC-------
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTA------- 453 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~a------- 453 (773)
|..|||||.+....+.|..+|...|+++..++|.....+|..+.+.|+.|. ++|+|..+|+|+|+.=.
T Consensus 444 g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~-----VtIATNmAGRGtDI~Lggn~~~~~ 518 (896)
T PRK13104 444 KQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA-----VTIATNMAGRGTDIVLGGSLAADL 518 (896)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc-----EEEeccCccCCcceecCCchhhhh
Confidence 999999999999999999999999999999999999999999999999874 89999999999997621
Q ss_pred -------------------------------CeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEE
Q 004103 454 -------------------------------DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 487 (773)
Q Consensus 454 -------------------------------d~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~ 487 (773)
=+||.-+.+-|--.+.|-.||++|.|..-....|
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~ 583 (896)
T PRK13104 519 ANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY 583 (896)
T ss_pred hccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE
Confidence 2788899999999999999999999988765554
No 109
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.4e-16 Score=165.50 Aligned_cols=314 Identities=18% Similarity=0.219 Sum_probs=211.6
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHH-HHHHHHhhcC--C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN-WINEFSTWAP--S 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~q-W~~E~~k~~p--~ 130 (773)
.++...|..||.-.+ .+.+.+.-...|+|||.+....+..........--+||++|...+.+ -..-...+.+ +
T Consensus 47 ekPSaIQqraI~p~i----~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~ 122 (397)
T KOG0327|consen 47 EKPSAIQQRAILPCI----KGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMD 122 (397)
T ss_pred CCchHHHhccccccc----cCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccc
Confidence 367778998887776 58889999999999999966666655443333335799999966655 3444455554 3
Q ss_pred ceEEEecCChhHH-HHHHHHHHhhcCCccEEEcCHHHHHHhH--HHHhhcCeeEEEEccccccCCh--hhHHHHHHHccc
Q 004103 131 IAAVVYDGRPDER-KAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKNH--ECALAKTISGYQ 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r-~~~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaH~lkn~--~s~~~~~l~~~~ 205 (773)
..+....|...-+ ....-. ....+|++.|+..+..-. ..|......+.|+|||..+... ..++......++
T Consensus 123 ~~v~~~igg~~~~~~~~~i~----~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp 198 (397)
T KOG0327|consen 123 VSVHACIGGTNVRREDQALL----KDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELP 198 (397)
T ss_pred eeeeeecCcccchhhhhhhh----ccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcC
Confidence 4555444433322 221111 145789999998775432 3455567889999999998543 445555566663
Q ss_pred -cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhh
Q 004103 206 -IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 284 (773)
Q Consensus 206 -~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~ 284 (773)
....+++|||-. ..+.++ .+.|. -.|..+-+.|.
T Consensus 199 ~~vQv~l~SAT~p-~~vl~v------------------t~~f~--------------------------~~pv~i~vkk~ 233 (397)
T KOG0327|consen 199 SDVQVVLLSATMP-SDVLEV------------------TKKFM--------------------------REPVRILVKKD 233 (397)
T ss_pred cchhheeecccCc-HHHHHH------------------HHHhc--------------------------cCceEEEecch
Confidence 446688888831 111000 00000 00000000111
Q ss_pred HHhhcCCCceeEEEEecCC-HHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhh
Q 004103 285 EVEKYLPGKSQVILKCDMS-AWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 363 (773)
Q Consensus 285 dv~~~LP~k~e~~v~~~~s-~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~ 363 (773)
+ +| +.++++|-.. ..
T Consensus 234 ~----------------ltl~gikq~~i~v------------------------------------------------~k 249 (397)
T KOG0327|consen 234 E----------------LTLEGIKQFYINV------------------------------------------------EK 249 (397)
T ss_pred h----------------hhhhheeeeeeec------------------------------------------------cc
Confidence 1 00 0011111111 01
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 443 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a 443 (773)
..|+..|..+.. .-...+|||+..+-++.|...|..+|+....+||.+...+|.-++..|+.|.+. +|++|..
T Consensus 250 ~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr---vlIttdl 322 (397)
T KOG0327|consen 250 EEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR---VLITTDL 322 (397)
T ss_pred cccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce---EEeeccc
Confidence 116777777776 345789999999999999999999999999999999999999999999998887 7999999
Q ss_pred ccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 444 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 444 gg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
.++|+|++.++.||+||.|-|...|.+|+||++|.|.+- .+..++++.
T Consensus 323 ~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~ 370 (397)
T KOG0327|consen 323 LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEE 370 (397)
T ss_pred cccccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHh
Confidence 999999999999999999999999999999999999653 344555554
No 110
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.69 E-value=2.5e-15 Score=158.43 Aligned_cols=324 Identities=15% Similarity=0.189 Sum_probs=218.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCceEEE
Q 004103 57 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVV 135 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~ 135 (773)
.|.|..++.-++. .+....++.+||.||++..-.. .|+. .|-++||.|. .|+.....-+.+.--....+.
T Consensus 22 s~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLP--aL~~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLN 92 (641)
T KOG0352|consen 22 SRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLP--ALVH----GGITIVISPLIALIKDQIDHLKRLKVPCESLN 92 (641)
T ss_pred ChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhch--HHHh----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhc
Confidence 4679999988885 6667899999999999763211 1111 2467888898 777777777766532222222
Q ss_pred ecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhH-----HHHh-hcCeeEEEEccccccCCh------hhHHHHHH-H
Q 004103 136 YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR-----QYLK-KVQWIYMIVDEGHRLKNH------ECALAKTI-S 202 (773)
Q Consensus 136 ~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~-----~~l~-~~~~~~vIiDEaH~lkn~------~s~~~~~l-~ 202 (773)
-.-+..+|..+...+........++.+|++....+. ..|. .....|++|||||+...+ +....-.| .
T Consensus 93 SKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS 172 (641)
T KOG0352|consen 93 SKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRS 172 (641)
T ss_pred chhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHh
Confidence 233456777777777666677889999999876642 2222 235689999999998542 22222333 4
Q ss_pred ccccceEEEecCCCCCCCHHHHHHhhccccCCC-CCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhh
Q 004103 203 GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTI-FNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 281 (773)
Q Consensus 203 ~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~-~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR 281 (773)
.+..-..+.||||--..--+|++..|.+-.|-- |.+ ..|...+
T Consensus 173 ~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT-P~FR~NL----------------------------------- 216 (641)
T KOG0352|consen 173 VCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT-PTFRDNL----------------------------------- 216 (641)
T ss_pred hCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC-cchhhhh-----------------------------------
Confidence 456667789999987777788888887665531 111 1111100
Q ss_pred hhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHH
Q 004103 282 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 361 (773)
Q Consensus 282 ~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~ 361 (773)
+|+....... ...+.++..-.+++.-.|-
T Consensus 217 ---------------------------FYD~~~K~~I---------~D~~~~LaDF~~~~LG~~~--------------- 245 (641)
T KOG0352|consen 217 ---------------------------FYDNHMKSFI---------TDCLTVLADFSSSNLGKHE--------------- 245 (641)
T ss_pred ---------------------------hHHHHHHHHh---------hhHhHhHHHHHHHhcCChh---------------
Confidence 1111110000 0001111111111111110
Q ss_pred hhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEec
Q 004103 362 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 441 (773)
Q Consensus 362 ~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt 441 (773)
|+. +. -+....--||||..+...+.|+-.|...|++...+|.+.+..+|.++.+.+-+++.+ +|++|
T Consensus 246 ----~~~---~~---~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P---vI~AT 312 (641)
T KOG0352|consen 246 ----KAS---QN---KKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP---VIAAT 312 (641)
T ss_pred ----hhh---cC---CCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC---EEEEE
Confidence 000 00 000122569999999999999999999999999999999999999999999998888 79999
Q ss_pred ccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEE
Q 004103 442 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVL 489 (773)
Q Consensus 442 ~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rL 489 (773)
-..|.|+|-+++..||+.+++-|.+-|-|--|||+|-|-..-++.|+=
T Consensus 313 ~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYs 360 (641)
T KOG0352|consen 313 VSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYS 360 (641)
T ss_pred eccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeec
Confidence 999999999999999999999999999999999999998888888763
No 111
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=9.6e-15 Score=170.61 Aligned_cols=117 Identities=17% Similarity=0.225 Sum_probs=105.3
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 443 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a 443 (773)
..|+.++.+.+......|.+|||||.+....+.|...|...|+++..++|.....++..+...++.+. ++|+|..
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~-----VtIATnm 497 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA-----VTIATNM 497 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce-----EEEEecc
Confidence 45888999999888889999999999999999999999999999999999998777777777776654 8999999
Q ss_pred ccccCCcc---cCC-----eeEEeCCCCChhhHHHHhhhhhhcCCcCeEE
Q 004103 444 GGLGLNLQ---TAD-----TVIIFDSDWNPQMDQQAEDRAHRIGQKKEVR 485 (773)
Q Consensus 444 gg~GLNL~---~ad-----~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~ 485 (773)
+|+|+|+. .+. +||.++.|-|...+.|+.||++|.|..-...
T Consensus 498 AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 498 AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 99999995 567 9999999999999999999999999887653
No 112
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.65 E-value=1e-14 Score=168.46 Aligned_cols=309 Identities=18% Similarity=0.182 Sum_probs=184.3
Q ss_pred hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-------CCCCEEEEeCC-cchHHHHHHHHhhcC--CceEEEecCC
Q 004103 70 LFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-------VTGPHVIVAPK-AVLPNWINEFSTWAP--SIAAVVYDGR 139 (773)
Q Consensus 70 ~~~~~~~gILademGlGKTi~aiali~~l~~~~~-------~~gp~LIVvP~-sll~qW~~E~~k~~p--~~~v~~~~g~ 139 (773)
.|+.+.|.|+|.+||+|||..|+..|..++..+. ..-+++.|+|. +|...-...|.+-+. ++.|.-+.|.
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD 201 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGD 201 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCc
Confidence 3678899999999999999998777777666421 22378999997 555545554444333 6788888887
Q ss_pred hhHHHHHHHHHHhhcCCccEEEcCHHHHHH-------hHHHHhhcCeeEEEEccccccCChhhH-----HHHHHHcc---
Q 004103 140 PDERKAMREEFFSERGRFNVLITHYDLIMR-------DRQYLKKVQWIYMIVDEGHRLKNHECA-----LAKTISGY--- 204 (773)
Q Consensus 140 ~~~r~~~~~~~~~~~~~~~VvItTye~l~~-------~~~~l~~~~~~~vIiDEaH~lkn~~s~-----~~~~l~~~--- 204 (773)
..--+.- . .+.+|+|||+|..-- +...+. ...+|||||.|.+...... .++.++..
T Consensus 202 ~ql~~te---i----~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vess 272 (1230)
T KOG0952|consen 202 TQLTKTE---I----ADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESS 272 (1230)
T ss_pred chhhHHH---H----HhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCcccchHHHHHHHHHHHHHhh
Confidence 6533221 1 567899999997621 222222 3579999999999765443 33333211
Q ss_pred -ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhh
Q 004103 205 -QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 283 (773)
Q Consensus 205 -~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k 283 (773)
..-+.++||||- + |..|+ -.||.-.+....-.|+..|. |.-
T Consensus 273 qs~IRivgLSATl-P-N~eDv---A~fL~vn~~~glfsFd~~yR----------------------------Pvp----- 314 (1230)
T KOG0952|consen 273 QSMIRIVGLSATL-P-NYEDV---ARFLRVNPYAGLFSFDQRYR----------------------------PVP----- 314 (1230)
T ss_pred hhheEEEEeeccC-C-CHHHH---HHHhcCCCccceeeeccccc----------------------------ccc-----
Confidence 345779999993 1 23333 23333222222222222221 111
Q ss_pred hHHhhcCCCceeEEEEecCC--HHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHH
Q 004103 284 DEVEKYLPGKSQVILKCDMS--AWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 361 (773)
Q Consensus 284 ~dv~~~LP~k~e~~v~~~~s--~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~ 361 (773)
.....+.++-. ..|.+..+
T Consensus 315 ---------L~~~~iG~k~~~~~~~~~~~d-------------------------------------------------- 335 (1230)
T KOG0952|consen 315 ---------LTQGFIGIKGKKNRQQKKNID-------------------------------------------------- 335 (1230)
T ss_pred ---------eeeeEEeeecccchhhhhhHH--------------------------------------------------
Confidence 11111111100 01111111
Q ss_pred hhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHH----HhCCCe-------------------EEEEcCCCCHH
Q 004103 362 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL----KLNDFK-------------------FLRLDGSTKTE 418 (773)
Q Consensus 362 ~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L----~~~g~~-------------------~~~i~G~~~~~ 418 (773)
..+.+.+.+ ....|+.|+||++.+.-.--.+..| ...|.. ....|.++.-.
T Consensus 336 --~~~~~kv~e----~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~ 409 (1230)
T KOG0952|consen 336 --EVCYDKVVE----FLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRS 409 (1230)
T ss_pred --HHHHHHHHH----HHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchh
Confidence 111222222 2356999999999774333333333 222222 34456778888
Q ss_pred HHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChh----------hHHHHhhhhhhcCCcCeEEEEE
Q 004103 419 ERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQ----------MDQQAEDRAHRIGQKKEVRVFV 488 (773)
Q Consensus 419 eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~----------~~~Qa~gRa~RiGQ~k~V~V~r 488 (773)
+|+-+-+.|..|..+ +|+||...+.|+||++--.+|---.-|++. +.+|-.|||+|..=.+.-..+.
T Consensus 410 DR~l~E~~F~~G~i~---vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giI 486 (1230)
T KOG0952|consen 410 DRQLVEKEFKEGHIK---VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGII 486 (1230)
T ss_pred hHHHHHHHHhcCCce---EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEE
Confidence 999999999998877 799999999999998765555444445554 5789999999987766655555
Q ss_pred EEeCC
Q 004103 489 LVSVG 493 (773)
Q Consensus 489 Li~~~ 493 (773)
+-+.+
T Consensus 487 iTt~d 491 (1230)
T KOG0952|consen 487 ITTRD 491 (1230)
T ss_pred Eeccc
Confidence 54443
No 113
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=6.6e-14 Score=164.30 Aligned_cols=392 Identities=16% Similarity=0.195 Sum_probs=220.5
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc-hHH---HHHHHHhhc
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPN---WINEFSTWA 128 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sl-l~q---W~~E~~k~~ 128 (773)
|..+++-|+-|.--| ..|-|.-..||.|||+++...+....-. + . .+-||+|+.. ..+ |...+-+++
T Consensus 79 g~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa~l~aL~-G-~-~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 79 GMRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPAYLNALT-G-K-GVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CCCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHHHHHHHc-C-C-CEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 456777788776433 2244777899999999875444322222 1 2 4669999954 444 544454444
Q ss_pred CCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHh---------HHHHhhcCeeEEEEccccccCChhhHHHH
Q 004103 129 PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD---------RQYLKKVQWIYMIVDEGHRLKNHECALAK 199 (773)
Q Consensus 129 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~---------~~~l~~~~~~~vIiDEaH~lkn~~s~~~~ 199 (773)
++.+.+..|.......... -..+|++.|...+.-| ...+....+.++|||||+.+.=.
T Consensus 150 -Glsv~~i~~~~~~~er~~~------y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLID------ 216 (830)
T PRK12904 150 -GLSVGVILSGMSPEERREA------YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILID------ 216 (830)
T ss_pred -CCeEEEEcCCCCHHHHHHh------cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheec------
Confidence 5677777664333221111 2478999998777322 11123346889999999987311
Q ss_pred HHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCCh-----------------HH
Q 004103 200 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTD-----------------EE 262 (773)
Q Consensus 200 ~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~-----------------~~ 262 (773)
.+...|++||.+-. ..++|..++-+-+..-... .| .. ......+.+++ .+
T Consensus 217 -----eArtpLiiSg~~~~--~~~~y~~~~~~v~~l~~~~-dy----~v-de~~~~v~lte~G~~~~e~~~~~~~ly~~~ 283 (830)
T PRK12904 217 -----EARTPLIISGPAED--SSELYKRANKIVPTLEKEG-DY----TV-DEKSRTVGLTEEGIEKAEKLLGIENLYDPE 283 (830)
T ss_pred -----cCCCceeeECCCCc--ccHHHHHHHHHHHhcCCCC-Ce----EE-EcCCCeeeECHHHHHHHHHHhCCccccChh
Confidence 12334777776432 2345544433322211110 00 00 00011111221 11
Q ss_pred HHHHHHHHHhhhhhhhh-hhhhhHHhhcCCCceeEEEEecC-------CHHHHHHHHHHHHhcccccccCC---------
Q 004103 263 QLLIIRRLHHVIRPFIL-RRKKDEVEKYLPGKSQVILKCDM-------SAWQKVYYQQVTDVGRVGLDTGT--------- 325 (773)
Q Consensus 263 ~~~~~~~L~~~L~p~~l-RR~k~dv~~~LP~k~e~~v~~~~-------s~~q~~~Y~~i~~~~~~~~~~~~--------- 325 (773)
.....+.+...|+-..+ .+-+ +.. +.+....+|- +. ..+..-+-+.+.......+....
T Consensus 284 ~~~~~~~i~~AL~A~~l~~~d~-dYi--V~dg~V~ivD-e~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~q 359 (830)
T PRK12904 284 NIALVHHLNQALRAHELFKRDV-DYI--VKDGEVVIVD-EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQ 359 (830)
T ss_pred hhHHHHHHHHHHHHHHHHhcCC-cEE--EECCEEEEEE-CCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHH
Confidence 11122223333332211 1111 100 1111111111 11 11222333333322222111111
Q ss_pred ----------CccchHHHHHHHHHHHhCCCCcccccccchhh---HHH--HhhcchHHHHHHHHHHhhhcCCcEEEEeec
Q 004103 326 ----------GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK---EEI--IRASGKFELLDRLLPKLRKSGHRVLLFSQM 390 (773)
Q Consensus 326 ----------~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~---~~l--~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~ 390 (773)
|-+.....-...+.++-+-+.+..+...+... +.. .....|+.++.+.+......|.+|||||.+
T Consensus 360 n~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~S 439 (830)
T PRK12904 360 NYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVS 439 (830)
T ss_pred HHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 11111112233455555544444332222111 011 123468999999998888899999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccC-----------------
Q 004103 391 TRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTA----------------- 453 (773)
Q Consensus 391 ~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~a----------------- 453 (773)
....+.|...|...|+++..++|. ..+|+..|..|..+... ++|+|+.+|+|+|+.-.
T Consensus 440 i~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~ 514 (830)
T PRK12904 440 IEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATNMAGRGTDIKLGGNPEMLAAALLEEETEE 514 (830)
T ss_pred HHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEecccccCCcCccCCCchhhhhhhhhhhhhhH
Confidence 999999999999999999999995 67999999999876655 89999999999997643
Q ss_pred ---------------------CeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEE
Q 004103 454 ---------------------DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 488 (773)
Q Consensus 454 ---------------------d~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~r 488 (773)
=+||.-+.+-|-..+.|..||++|.|..-..+.|.
T Consensus 515 ~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~l 570 (830)
T PRK12904 515 QIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL 570 (830)
T ss_pred HHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEE
Confidence 27888999999999999999999999987766553
No 114
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=1.7e-15 Score=159.88 Aligned_cols=316 Identities=17% Similarity=0.206 Sum_probs=214.6
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHH-HHHHHHhcCCCCCEEEEeCC-cchHHH---HHHHHhhcC
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLENKGVTGPHVIVAPK-AVLPNW---INEFSTWAP 129 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aial-i~~l~~~~~~~gp~LIVvP~-sll~qW---~~E~~k~~p 129 (773)
++.|.|.+.+.-++ .+...+-..-+|+|||..-+.- +..|...-...-+.||+.|+ .|..|- ..++.++..
T Consensus 43 ~ptpiqRKTipliL----e~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~ 118 (529)
T KOG0337|consen 43 TPTPIQRKTIPLIL----EGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTK 118 (529)
T ss_pred CCCchhccccccee----eccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccc
Confidence 56778888887666 4555566678999999886544 44444433223378999998 555554 444445443
Q ss_pred CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCC--hhhHHHHHHHccc
Q 004103 130 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKN--HECALAKTISGYQ 205 (773)
Q Consensus 130 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn--~~s~~~~~l~~~~ 205 (773)
--.++.+.|..-+.+... -..+.|||++|+..+..-.. .|......|||+||+.++-. ..-.+.+.+.+++
T Consensus 119 lr~s~~~ggD~~eeqf~~-----l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~ 193 (529)
T KOG0337|consen 119 LRQSLLVGGDSIEEQFIL-----LNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLP 193 (529)
T ss_pred hhhhhhcccchHHHHHHH-----hccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCC
Confidence 333335555544333221 12578999999988754322 24445678999999999843 4567888888774
Q ss_pred -cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhh
Q 004103 206 -IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 284 (773)
Q Consensus 206 -~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~ 284 (773)
+...+++|||- .+.+.++ .. ..+..|..+| -
T Consensus 194 ~~~QTllfSatl-p~~lv~f------------------ak--------------------------aGl~~p~lVR---l 225 (529)
T KOG0337|consen 194 ESRQTLLFSATL-PRDLVDF------------------AK--------------------------AGLVPPVLVR---L 225 (529)
T ss_pred CcceEEEEeccC-chhhHHH------------------HH--------------------------ccCCCCceEE---e
Confidence 45779999993 2222221 10 0011122222 1
Q ss_pred HHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhc
Q 004103 285 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 364 (773)
Q Consensus 285 dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s 364 (773)
||+..+.+. .+++.+ .+...
T Consensus 226 dvetkise~------------------------------------------lk~~f~------------------~~~~a 245 (529)
T KOG0337|consen 226 DVETKISEL------------------------------------------LKVRFF------------------RVRKA 245 (529)
T ss_pred ehhhhcchh------------------------------------------hhhhee------------------eeccH
Confidence 111111000 000000 01334
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
.|..+|..++..... .++.+||+.....++++...|...|+....+.|++.+..|..-+.+|+.+... +|++|+.+
T Consensus 246 ~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~---~lvvTdva 321 (529)
T KOG0337|consen 246 EKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTS---ILVVTDVA 321 (529)
T ss_pred HHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccc---eEEEehhh
Confidence 567777777766543 45899999999999999999999999999999999999999999999987766 89999999
Q ss_pred cccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 445 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 445 g~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
.+|++++-.+.||+||.|-.+..+++|.||+.|.|.+- ..|-||+.+
T Consensus 322 aRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~~ 368 (529)
T KOG0337|consen 322 ARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVAST 368 (529)
T ss_pred hccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEecc
Confidence 99999999999999999999999999999999998653 456666654
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.64 E-value=3e-14 Score=166.97 Aligned_cols=125 Identities=21% Similarity=0.176 Sum_probs=109.5
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 443 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a 443 (773)
.+++..|...+....+.|.++||||.....++.|..+|...|+++..+||.++..+|.++++.|..|... +|++|..
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~---VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFD---VLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCce---EEEEcCh
Confidence 4577788888888778899999999999999999999999999999999999999999999999987755 7899999
Q ss_pred ccccCCcccCCeeEEeC-----CCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCC
Q 004103 444 GGLGLNLQTADTVIIFD-----SDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 494 (773)
Q Consensus 444 gg~GLNL~~ad~VI~~D-----~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~t 494 (773)
+++|++++.++.||++| .+-+...++|++||++|.. ...++.|+...|
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~~ 554 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKIT 554 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCCC
Confidence 99999999999999999 5668899999999999973 334555655443
No 116
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.61 E-value=3e-14 Score=173.78 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=88.6
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhCCCe---EEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCee
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLNDFK---FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 456 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~---~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~V 456 (773)
....+|||+.....++.+.+.|...+++ ++.++|+++.++|..+++.+ + .+-+|+||+.++.||+++++++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g---~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH--S---GRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc--C---CeeEEEeccHHhhccccCcceEE
Confidence 4568999999999999999999987765 67899999999999987653 2 23479999999999999999999
Q ss_pred EEeC---------------CCCCh---hhHHHHhhhhhhcCCcCeEEEEEEEeCCCH
Q 004103 457 IIFD---------------SDWNP---QMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 495 (773)
Q Consensus 457 I~~D---------------~~wNp---~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ti 495 (773)
|.++ .+-.| ..+.||.||++|. .+-.+|+|+++...
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~ 413 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDF 413 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHH
Confidence 9975 23233 5799999999997 46778899987543
No 117
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.61 E-value=1.2e-15 Score=130.09 Aligned_cols=78 Identities=33% Similarity=0.559 Sum_probs=74.6
Q ss_pred HHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhc
Q 004103 399 IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI 478 (773)
Q Consensus 399 ~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~Ri 478 (773)
.+|+..|+++..+||.++.++|..+++.|+++... +|++|.++++|||++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 36889999999999999999999999999998875 899999999999999999999999999999999999999998
Q ss_pred C
Q 004103 479 G 479 (773)
Q Consensus 479 G 479 (773)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 118
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.61 E-value=1.6e-14 Score=144.08 Aligned_cols=165 Identities=25% Similarity=0.334 Sum_probs=118.1
Q ss_pred CCCchHHHHHHHHHHHHhhcCC-CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCC
Q 004103 53 GGELRAYQLEGLQWMLSLFNNN-LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS 130 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~-~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~ 130 (773)
..+++|+|.+++..++. . .++++..++|+|||.+++.++........ ..++||++|. .+..||..++.++++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 6 FEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred CCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 36899999999998883 4 78899999999999988777777665432 4589999996 8889999999998865
Q ss_pred ---ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCC--hhhHHHHHHHc
Q 004103 131 ---IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKN--HECALAKTISG 203 (773)
Q Consensus 131 ---~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn--~~s~~~~~l~~ 203 (773)
.....+.+.... .... .... ..++++++||+.+...... +...+++++||||+|.+.+ ........+..
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~-~~~~--~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 81 LGLKVVGLYGGDSKR-EQLR-KLES--GKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred CCeEEEEEeCCcchH-HHHH-HHhc--CCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 344455554422 1111 1111 3348999999999886655 4455788999999999985 33344444444
Q ss_pred c-ccceEEEecCCCCCCCHHHHHH
Q 004103 204 Y-QIQRRLLLTGTPIQNSLQELWS 226 (773)
Q Consensus 204 ~-~~~~rllLTgTP~~n~~~el~~ 226 (773)
+ ...+++++||||..+.....+.
T Consensus 157 ~~~~~~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 157 LPKNVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred CCccceEEEEecCCchhHHHHHHH
Confidence 4 5788999999997443333333
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.60 E-value=1.6e-12 Score=153.53 Aligned_cols=124 Identities=23% Similarity=0.213 Sum_probs=108.8
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 443 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a 443 (773)
.+++..|...|......|.++||||.....++.|..+|...|+++..+||.++..+|..+++.|..|... ++|+|..
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~---vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCce---EEEEeCH
Confidence 4567778888888788899999999999999999999999999999999999999999999999887654 7899999
Q ss_pred ccccCCcccCCeeEEeCC-----CCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 444 GGLGLNLQTADTVIIFDS-----DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 444 gg~GLNL~~ad~VI~~D~-----~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
+++|++++.+++||++|. +-++..++|++||++|- . .-.++.|+...
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~~ 557 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADKI 557 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecCC
Confidence 999999999999999997 46889999999999994 2 34566666643
No 120
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=5.1e-13 Score=156.55 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=108.3
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
...|+.++.+-+..+.+.|.+|||||.+....+.+..+|...|+++..+++..+..+|..+.+.|+.|. ++|+|.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecC
Confidence 456889999999999999999999999999999999999999999999999999999999999999866 799999
Q ss_pred cccccCCcccC-------------------------------------CeeEEeCCCCChhhHHHHhhhhhhcCCcCeEE
Q 004103 443 AGGLGLNLQTA-------------------------------------DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVR 485 (773)
Q Consensus 443 agg~GLNL~~a-------------------------------------d~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~ 485 (773)
.+|+|+|+.=. =+||.-+.+-|--.+.|..||++|.|..-...
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 99999997622 27899999999999999999999999876654
Q ss_pred EE
Q 004103 486 VF 487 (773)
Q Consensus 486 V~ 487 (773)
.|
T Consensus 586 f~ 587 (908)
T PRK13107 586 FY 587 (908)
T ss_pred EE
Confidence 44
No 121
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.56 E-value=3.4e-14 Score=133.35 Aligned_cols=136 Identities=21% Similarity=0.272 Sum_probs=100.1
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-chHHHHHHHHhhcC-CceEEEecCChhHHHHHHHHHHhh
Q 004103 76 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA-VLPNWINEFSTWAP-SIAAVVYDGRPDERKAMREEFFSE 153 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~s-ll~qW~~E~~k~~p-~~~v~~~~g~~~~r~~~~~~~~~~ 153 (773)
++++.+++|+|||.+++.++..+... ...+++||++|.. +..+|...+..+.. ...+.++.+.......... .
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 76 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----L 76 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH----h
Confidence 57899999999999999999888775 3456999999995 55556777777775 4566666665544333211 1
Q ss_pred cCCccEEEcCHHHHHHhHHHH--hhcCeeEEEEccccccCChhhHHH---HHHHccccceEEEecCCC
Q 004103 154 RGRFNVLITHYDLIMRDRQYL--KKVQWIYMIVDEGHRLKNHECALA---KTISGYQIQRRLLLTGTP 216 (773)
Q Consensus 154 ~~~~~VvItTye~l~~~~~~l--~~~~~~~vIiDEaH~lkn~~s~~~---~~l~~~~~~~rllLTgTP 216 (773)
....+++++||+.+....... ....++++||||+|.+.+...... .........+++++||||
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 267889999999887754432 244789999999999987655443 334456788999999998
No 122
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.54 E-value=5.2e-13 Score=159.82 Aligned_cols=346 Identities=18% Similarity=0.166 Sum_probs=206.5
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh-cCCCCCEEEEeCC-cchHHHHHHHHhhcCCc
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN-KGVTGPHVIVAPK-AVLPNWINEFSTWAPSI 131 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~-~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~ 131 (773)
...+++|..+++........+..++|.++||.|||..++.++.+.... .....+++.|.|. +++.+....+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 356999999999998876666578999999999999999888888776 3345577888888 66667888888877554
Q ss_pred eEEEe--cCChhHHHHHHHHH-----H-----hhcCCccEEEcCHHHHHHh------HHHHhhcCeeEEEEccccccCCh
Q 004103 132 AAVVY--DGRPDERKAMREEF-----F-----SERGRFNVLITHYDLIMRD------RQYLKKVQWIYMIVDEGHRLKNH 193 (773)
Q Consensus 132 ~v~~~--~g~~~~r~~~~~~~-----~-----~~~~~~~VvItTye~l~~~------~~~l~~~~~~~vIiDEaH~lkn~ 193 (773)
.+... +|.....-...... . ....-+.+.+++...+... ...+..+.-.++|+||+|-+-..
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 44443 44333222111100 0 0001122333333322221 11144455679999999998654
Q ss_pred -hh-HHHHHHHcc--ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHH
Q 004103 194 -EC-ALAKTISGY--QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRR 269 (773)
Q Consensus 194 -~s-~~~~~l~~~--~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~ 269 (773)
.. .+...+..+ .....+++|||+-.- |.+.+...+.....+.
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~----------------------~~~~l~~~~~~~~~~~------------ 399 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPF----------------------LKEKLKKALGKGREVV------------ 399 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCCHH----------------------HHHHHHHHHhccccee------------
Confidence 22 222233333 367889999996311 1111110000000000
Q ss_pred HHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCccc
Q 004103 270 LHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFV 349 (773)
Q Consensus 270 L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~ 349 (773)
......|. ++.|.+..
T Consensus 400 ---------------~~~~~~~~-------------------------------------------------~~e~~~~~ 415 (733)
T COG1203 400 ---------------ENAKFCPK-------------------------------------------------EDEPGLKR 415 (733)
T ss_pred ---------------cccccccc-------------------------------------------------cccccccc
Confidence 00000000 01111110
Q ss_pred ccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcC
Q 004103 350 GEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNA 429 (773)
Q Consensus 350 ~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~ 429 (773)
..... +...+. ..+...+..-...|.+|+|-++.+..+..+...|+..+.+++.+|+.....+|.+.++...+
T Consensus 416 ~~~~~------~~~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~ 488 (733)
T COG1203 416 KERVD------VEDGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKK 488 (733)
T ss_pred ccchh------hhhhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHH
Confidence 00000 000000 12223333334568899999999999999999999988889999999999999998885442
Q ss_pred C-CCCcEEEEEecccccccCCcccCCeeEEeCCCCC-hhhHHHHhhhhhhcC--CcCeEEEEEEEeCCCHHHHHHHHHHH
Q 004103 430 P-DSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWN-PQMDQQAEDRAHRIG--QKKEVRVFVLVSVGSIEEVILERAKQ 505 (773)
Q Consensus 430 ~-~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wN-p~~~~Qa~gRa~RiG--Q~k~V~V~rLi~~~tiEe~i~~~~~~ 505 (773)
- ......++|+|++...|+|+. .|.+|- +-+ ....+||.||++|-| ....+.|+...-......+.++....
T Consensus 489 ~~~~~~~~IvVaTQVIEagvDid-fd~mIT---e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 564 (733)
T COG1203 489 LFKQNEGFIVVATQVIEAGVDID-FDVLIT---ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEK 564 (733)
T ss_pred HHhccCCeEEEEeeEEEEEeccc-cCeeee---cCCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchh
Confidence 1 000113799999999999975 776663 223 467899999999999 45557777777777777777666555
Q ss_pred HHh
Q 004103 506 KMG 508 (773)
Q Consensus 506 K~~ 508 (773)
+..
T Consensus 565 ~~~ 567 (733)
T COG1203 565 KLK 567 (733)
T ss_pred hhc
Confidence 443
No 123
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.54 E-value=2.9e-12 Score=139.64 Aligned_cols=132 Identities=22% Similarity=0.222 Sum_probs=109.1
Q ss_pred HHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCc
Q 004103 371 DRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNL 450 (773)
Q Consensus 371 ~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL 450 (773)
..-+.+..+.+.|+||-+-..+|++-|.+||...|+++..+|.....-+|.++|.+.+.|..+ +|+....+-+||||
T Consensus 436 ~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLLREGLDi 512 (663)
T COG0556 436 LSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLLREGLDL 512 (663)
T ss_pred HHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhhhccCCC
Confidence 333344456789999999999999999999999999999999999999999999999999887 79999999999999
Q ss_pred ccCCeeEEeCCC-----CChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHH
Q 004103 451 QTADTVIIFDSD-----WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 506 (773)
Q Consensus 451 ~~ad~VI~~D~~-----wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K 506 (773)
+.+..|.++|.| -+-...+|-+|||.|--.. .|..|-=...+++...|-+..+++
T Consensus 513 PEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~RRR 572 (663)
T COG0556 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETERRR 572 (663)
T ss_pred cceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHHHH
Confidence 999999999998 4778999999999995333 354444444466666666554443
No 124
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.54 E-value=3.3e-13 Score=165.43 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=88.8
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhCC---CeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCee
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLND---FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 456 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~g---~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~V 456 (773)
....+|||+.....++.+...|...+ +.+..+||+++.++|..+++.+ . . +-+|+||..+..||+++++++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~-~-rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---S-G-RRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---C-C-ceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 4588999999999999885543 2 1 2379999999999999999999
Q ss_pred EEeCCC----C--------------ChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCH
Q 004103 457 IIFDSD----W--------------NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 495 (773)
Q Consensus 457 I~~D~~----w--------------Np~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ti 495 (773)
|.++.. + +...+.||.||++|.| +-.+|+|+++...
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~ 406 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDF 406 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHH
Confidence 998732 1 3468999999999997 7778999987544
No 125
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.50 E-value=7.2e-13 Score=155.11 Aligned_cols=302 Identities=23% Similarity=0.276 Sum_probs=179.3
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--------CCCEEEEeCC-cchHHHHHHHH
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV--------TGPHVIVAPK-AVLPNWINEFS 125 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~--------~gp~LIVvP~-sll~qW~~E~~ 125 (773)
.|.+.|-..-...+ ....+.+||.++|.|||..|+.-+..-+..+.. ..++..|+|. +|+..|...|.
T Consensus 309 sLNrIQS~v~daAl---~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 309 SLNRIQSKVYDAAL---RGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred hhhHHHHHHHHHHh---cCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 45555544333222 345567899999999999987666555443222 2356788997 88888999999
Q ss_pred hhcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHH---HHh---HHHHhhcCeeEEEEcccccc-CChhhHHH
Q 004103 126 TWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI---MRD---RQYLKKVQWIYMIVDEGHRL-KNHECALA 198 (773)
Q Consensus 126 k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l---~~~---~~~l~~~~~~~vIiDEaH~l-kn~~s~~~ 198 (773)
++...+.+.|..-+.+......+. ..-+|+++|+|.. .+. ..... -++++||||.|.+ -++++.+-
T Consensus 386 kRla~~GI~V~ElTgD~~l~~~qi-----eeTqVIV~TPEK~DiITRk~gdraY~q--lvrLlIIDEIHLLhDdRGpvLE 458 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLGKEQI-----EETQVIVTTPEKWDIITRKSGDRAYEQ--LVRLLIIDEIHLLHDDRGPVLE 458 (1674)
T ss_pred hhccccCcEEEEecccccchhhhh-----hcceeEEeccchhhhhhcccCchhHHH--HHHHHhhhhhhhcccccchHHH
Confidence 998766555544333322111111 3457999998765 221 12221 2568999999999 23333332
Q ss_pred ----HHHHcc----ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHH
Q 004103 199 ----KTISGY----QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRL 270 (773)
Q Consensus 199 ----~~l~~~----~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L 270 (773)
+..++. ...+.++||||- -|..|.-+.|..-.+++|-....|
T Consensus 459 SIVaRt~r~ses~~e~~RlVGLSATL--PNy~DV~~Fl~v~~~glf~fd~sy---------------------------- 508 (1674)
T KOG0951|consen 459 SIVARTFRRSESTEEGSRLVGLSATL--PNYEDVASFLRVDPEGLFYFDSSY---------------------------- 508 (1674)
T ss_pred HHHHHHHHHhhhcccCceeeeecccC--CchhhhHHHhccCcccccccCccc----------------------------
Confidence 223222 245669999994 244555554443334443211111
Q ss_pred HhhhhhhhhhhhhhHHhhcCCCceeEEEEecC-CHH------HHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhC
Q 004103 271 HHVIRPFILRRKKDEVEKYLPGKSQVILKCDM-SAW------QKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 343 (773)
Q Consensus 271 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~-s~~------q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~ 343 (773)
|| .|= ....+.+.- .+. -...|+.
T Consensus 509 ----Rp-------------vPL-~qq~Igi~ek~~~~~~qamNe~~yeK------------------------------- 539 (1674)
T KOG0951|consen 509 ----RP-------------VPL-KQQYIGITEKKPLKRFQAMNEACYEK------------------------------- 539 (1674)
T ss_pred ----Cc-------------CCc-cceEeccccCCchHHHHHHHHHHHHH-------------------------------
Confidence 00 111 111111110 111 1122222
Q ss_pred CCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecH----HHHHHHH----------HHHHh------
Q 004103 344 HPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMT----RLMDILE----------IYLKL------ 403 (773)
Q Consensus 344 hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~----~~ld~L~----------~~L~~------ 403 (773)
++.. +..+.||||++++ +++..|. .+++.
T Consensus 540 -----------------------------Vm~~--agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~e 588 (1674)
T KOG0951|consen 540 -----------------------------VLEH--AGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASRE 588 (1674)
T ss_pred -----------------------------HHHh--CCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhh
Confidence 2222 1235777777765 3444444 22211
Q ss_pred -----------------CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEE-----eCC
Q 004103 404 -----------------NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII-----FDS 461 (773)
Q Consensus 404 -----------------~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~-----~D~ 461 (773)
..+.+...|.+++..+|...-+.|.+|..+ +++||...+.|+||+ |++||+ ||+
T Consensus 589 ilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iq---vlvstatlawgvnlp-ahtViikgtqvy~p 664 (1674)
T KOG0951|consen 589 ILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQ---VLVSTATLAWGVNLP-AHTVIIKGTQVYDP 664 (1674)
T ss_pred hhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCcee---EEEeehhhhhhcCCC-cceEEecCccccCc
Confidence 145688899999999999999999998877 799999999999986 566766 666
Q ss_pred C---C---ChhhHHHHhhhhhhcCC
Q 004103 462 D---W---NPQMDQQAEDRAHRIGQ 480 (773)
Q Consensus 462 ~---w---Np~~~~Qa~gRa~RiGQ 480 (773)
. | +|....|+.|||+|.+-
T Consensus 665 ekg~w~elsp~dv~qmlgragrp~~ 689 (1674)
T KOG0951|consen 665 EKGRWTELSPLDVMQMLGRAGRPQY 689 (1674)
T ss_pred ccCccccCCHHHHHHHHhhcCCCcc
Confidence 4 4 58899999999999764
No 126
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.49 E-value=4.2e-13 Score=131.57 Aligned_cols=158 Identities=16% Similarity=0.279 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCC--ceE
Q 004103 57 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS--IAA 133 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~--~~v 133 (773)
.|+|.+++..+. ++.+.++..++|+|||..++..+...+... ..+.+||++|. .++.|-..++.+++.. ..+
T Consensus 1 t~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSE
T ss_pred CHHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccc
Confidence 389999998887 477789999999999999887666655544 44589999998 7888899999988854 677
Q ss_pred EEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCCh--hhHHHHHHHcc---cc
Q 004103 134 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTISGY---QI 206 (773)
Q Consensus 134 ~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~--~s~~~~~l~~~---~~ 206 (773)
..+.|...........+ ..+.+|+|+|++.+...... +.-...++|||||+|.+... .......+..+ ..
T Consensus 76 ~~~~~~~~~~~~~~~~~---~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~ 152 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVL---SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKN 152 (169)
T ss_dssp EEESTTSCHHHHHHHHH---HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTT
T ss_pred ccccccccccccccccc---cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCC
Confidence 77766544221211111 15789999999999876553 12234889999999998652 23344444443 34
Q ss_pred ceEEEecCCCCCCCHHH
Q 004103 207 QRRLLLTGTPIQNSLQE 223 (773)
Q Consensus 207 ~~rllLTgTP~~n~~~e 223 (773)
.+.+++||||- .+++.
T Consensus 153 ~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 153 IQIILLSATLP-SNVEK 168 (169)
T ss_dssp SEEEEEESSST-HHHHH
T ss_pred CcEEEEeeCCC-hhHhh
Confidence 67999999997 54443
No 127
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.48 E-value=9.8e-14 Score=118.47 Aligned_cols=81 Identities=37% Similarity=0.499 Sum_probs=75.9
Q ss_pred HHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhh
Q 004103 396 ILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRA 475 (773)
Q Consensus 396 ~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa 475 (773)
.+..+|...++.+..++|.++.++|..+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999998765 4889999999999999999999999999999999999999
Q ss_pred hhcC
Q 004103 476 HRIG 479 (773)
Q Consensus 476 ~RiG 479 (773)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 128
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=1.9e-11 Score=143.65 Aligned_cols=120 Identities=15% Similarity=0.263 Sum_probs=98.2
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
...|+.++.+-+..+.+.|..|||-|.++..-+.|..+|...|+++..++.... +.-.++|.+- |... .+.|+|.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~A--G~~g--~VTIATN 624 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAGA--GKLG--AVTVATN 624 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHhc--CCCC--cEEEeec
Confidence 357889999999999999999999999999999999999999999999988643 2223445433 3322 3799999
Q ss_pred cccccCCcccC--------CeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEE
Q 004103 443 AGGLGLNLQTA--------DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 487 (773)
Q Consensus 443 agg~GLNL~~a--------d~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~ 487 (773)
.+|+|.|+.-. =+||.-..+-|...+.|..||++|.|..-....|
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999987643 2789999999999999999999999988765544
No 129
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=4.6e-12 Score=149.20 Aligned_cols=116 Identities=18% Similarity=0.263 Sum_probs=103.9
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 443 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a 443 (773)
..|+.+|.+.+..+...|.+|||||.+....+.|..+|...|+++..+++ ...+|++.|..|..+... ++|+|+.
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~---VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA---VTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe---EEEeccC
Confidence 45899999999998889999999999999999999999999999999997 677999999999876654 8999999
Q ss_pred ccccCCcccCC--------eeEEeCCCCChhhHHHHhhhhhhcCCcCeE
Q 004103 444 GGLGLNLQTAD--------TVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 484 (773)
Q Consensus 444 gg~GLNL~~ad--------~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V 484 (773)
+|+|+|+.-.+ +||.++.+-+...|.|+.||++|.|..-..
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 99999998433 448899999999999999999999987654
No 130
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.45 E-value=1.7e-12 Score=131.58 Aligned_cols=155 Identities=16% Similarity=0.155 Sum_probs=108.0
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHH-HHHHHHhc-CCCCCEEEEeCC-cchHHHHHHHHhhcC--
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLENK-GVTGPHVIVAPK-AVLPNWINEFSTWAP-- 129 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aial-i~~l~~~~-~~~gp~LIVvP~-sll~qW~~E~~k~~p-- 129 (773)
.|++||.++++.+.+ +.+.+++.++|+|||++.+.. +..+.... ...+.+|||+|. .++.|+...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 589999999988884 788999999999999985444 44444431 234568999998 788889998888864
Q ss_pred CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChh--hHHHHHHHccc
Q 004103 130 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQ 205 (773)
Q Consensus 130 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~--s~~~~~l~~~~ 205 (773)
+..+..+.|........... . ...+|+|+|++.+...... +....++++|+||+|.+.+.. ..+...+..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~--~--~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~ 172 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKL--K--RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLP 172 (203)
T ss_pred CceEEEEECCCCHHHHHHHh--c--CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCC
Confidence 56677777765543332211 1 4778999999887653221 112356899999999986543 22233334443
Q ss_pred -cceEEEecCCCC
Q 004103 206 -IQRRLLLTGTPI 217 (773)
Q Consensus 206 -~~~rllLTgTP~ 217 (773)
....+++||||-
T Consensus 173 ~~~~~~~~SAT~~ 185 (203)
T cd00268 173 KDRQTLLFSATMP 185 (203)
T ss_pred cccEEEEEeccCC
Confidence 567899999986
No 131
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=1.5e-10 Score=133.12 Aligned_cols=387 Identities=16% Similarity=0.162 Sum_probs=214.9
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHH----HHHHHHhhc
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN----WINEFSTWA 128 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~q----W~~E~~k~~ 128 (773)
|..+++-|+-|...|+. |-|.-..||.|||++|...+...... ...+.||+|+..|.. |...+-+++
T Consensus 76 g~r~ydvQlig~l~Ll~------G~VaEM~TGEGKTLvA~l~a~l~AL~---G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 76 GLRPFDVQLLGALRLLA------GDVIEMATGEGKTLAGAIAAAGYALQ---GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCCcchHHHHHHHHHhC------CCcccccCCCCHHHHHHHHHHHHHHc---CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 56788889988866652 34667889999999986555443332 347889999966533 666666666
Q ss_pred CCceEEEecCChh--HHHHHHHHHHhhcCCccEEEcCHHHH-----HHh----HHHHhhcCeeEEEEccccccCChhhHH
Q 004103 129 PSIAAVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLI-----MRD----RQYLKKVQWIYMIVDEGHRLKNHECAL 197 (773)
Q Consensus 129 p~~~v~~~~g~~~--~r~~~~~~~~~~~~~~~VvItTye~l-----~~~----~~~l~~~~~~~vIiDEaH~lkn~~s~~ 197 (773)
++.+.+..+... ++... -.+||+-+|-.-+ ..+ ....-...+.++||||++.+.=.
T Consensus 147 -GLsvg~i~~~~~~~err~a--------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLID---- 213 (764)
T PRK12326 147 -GLTVGWITEESTPEERRAA--------YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVD---- 213 (764)
T ss_pred -CCEEEEECCCCCHHHHHHH--------HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheec----
Confidence 567777665433 22221 2457777774332 222 22233346889999999865211
Q ss_pred HHHHHccccceEEEecCCCCC-CCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHH--------------
Q 004103 198 AKTISGYQIQRRLLLTGTPIQ-NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEE-------------- 262 (773)
Q Consensus 198 ~~~l~~~~~~~rllLTgTP~~-n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~-------------- 262 (773)
.+..-|++||.+-. +....++.+..-|.++. . |.. ......+.+++..
T Consensus 214 -------eArtPLiISg~~~~~~~y~~~~~~v~~L~~~~-----d----y~i-de~~k~v~LTe~G~~~~e~~l~~~~ly 276 (764)
T PRK12326 214 -------EALVPLVLAGSTPGEAPRGEIAELVRRLREGK-----D----YEI-DDDGRNVHLTDKGARKVEKALGGIDLY 276 (764)
T ss_pred -------cccCceeeeCCCcchhHHHHHHHHHHhcCcCC-----c----EEE-EcCCCeeEecHHHHHHHHHHcCCcccc
Confidence 24556888876532 23333334443333321 0 000 0000111111111
Q ss_pred ---H-HHHHHHHHhhhhhhh-hhhhhhHHhhcCCCceeEEEEecC-------CHHHHHHHHHHHHhcccccccCC-----
Q 004103 263 ---Q-LLIIRRLHHVIRPFI-LRRKKDEVEKYLPGKSQVILKCDM-------SAWQKVYYQQVTDVGRVGLDTGT----- 325 (773)
Q Consensus 263 ---~-~~~~~~L~~~L~p~~-lRR~k~dv~~~LP~k~e~~v~~~~-------s~~q~~~Y~~i~~~~~~~~~~~~----- 325 (773)
. ...+..+...|+-.. +.+ ++.--+-+....+|. +. ..++.-+-+.+.......+....
T Consensus 277 ~~~~~~~~~~~i~~AL~A~~l~~~---d~dYiV~dgeV~iVD-e~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~As 352 (764)
T PRK12326 277 SEEHVGTTLTQVNVALHAHALLQR---DVHYIVRDGKVHLIN-ASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDT 352 (764)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhc---CCcEEEECCEEEEEE-CCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeeh
Confidence 1 111222222222211 111 110000011111111 11 11223333333332222211111
Q ss_pred --------------CccchHHHHHHHHHHHhCCCCcccccccchhh----HH-HHhhcchHHHHHHHHHHhhhcCCcEEE
Q 004103 326 --------------GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK----EE-IIRASGKFELLDRLLPKLRKSGHRVLL 386 (773)
Q Consensus 326 --------------~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~----~~-l~~~s~K~~~L~~ll~~l~~~g~kvLI 386 (773)
|-+.........++++-+-+.+..+...+... +. ......|+.++.+-+..+.+.|..|||
T Consensus 353 IT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLV 432 (764)
T PRK12326 353 ITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLV 432 (764)
T ss_pred hhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 11111122233456655554443332222110 01 112356899999999999999999999
Q ss_pred EeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccC-------------
Q 004103 387 FSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTA------------- 453 (773)
Q Consensus 387 Fsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~a------------- 453 (773)
.+.++..-+.|...|...|+++..++.... ++-.++|.+- |... .+-|+|..+|+|-|+.-.
T Consensus 433 gt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~ 507 (764)
T PRK12326 433 GTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--GKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAEL 507 (764)
T ss_pred EeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--CCCC--cEEEEecCCCCccCeecCCCcccchHHHHHc
Confidence 999999999999999999999999998744 3335555543 3222 379999999999997633
Q ss_pred --CeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEE
Q 004103 454 --DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 487 (773)
Q Consensus 454 --d~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~ 487 (773)
=+||..+.+-|-..+.|..||++|.|..-....|
T Consensus 508 GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 508 GGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 2789999999999999999999999988766554
No 132
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.33 E-value=5.9e-10 Score=128.35 Aligned_cols=356 Identities=18% Similarity=0.165 Sum_probs=203.7
Q ss_pred CCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHH-HHHHHHhhcCC
Q 004103 52 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN-WINEFSTWAPS 130 (773)
Q Consensus 52 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~q-W~~E~~k~~p~ 130 (773)
...+|-.+|.+|+-.|. .+-..++|..|.+|||++|=.+|+-.... .-+++.-.|-..++| =.++|+.-|.+
T Consensus 294 ~pFelD~FQk~Ai~~le----rg~SVFVAAHTSAGKTvVAEYAialaq~h---~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHLE----RGDSVFVAAHTSAGKTVVAEYAIALAQKH---MTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred CCCCccHHHHHHHHHHH----cCCeEEEEecCCCCcchHHHHHHHHHHhh---ccceEecchhhhhccchHHHHHHhccc
Confidence 34688999999997776 57888999999999999975444332221 226788889755554 67788887766
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHh----HHHHhhcCeeEEEEccccccCChh-hHHHHHHH-cc
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD----RQYLKKVQWIYMIVDEGHRLKNHE-CALAKTIS-GY 204 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~----~~~l~~~~~~~vIiDEaH~lkn~~-s~~~~~l~-~~ 204 (773)
+. +..|...- +.....+|+|-+.+.+- .+.++. ...||+||+|.+.+.. .-.+..+. .+
T Consensus 367 vg--LlTGDvqi-----------nPeAsCLIMTTEILRsMLYrgadliRD--vE~VIFDEVHYiND~eRGvVWEEViIMl 431 (1248)
T KOG0947|consen 367 VG--LLTGDVQI-----------NPEASCLIMTTEILRSMLYRGADLIRD--VEFVIFDEVHYINDVERGVVWEEVIIML 431 (1248)
T ss_pred cc--eeecceee-----------CCCcceEeehHHHHHHHHhcccchhhc--cceEEEeeeeecccccccccceeeeeec
Confidence 65 55665432 15678999999988763 233444 4569999999996633 22333332 22
Q ss_pred -ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhh
Q 004103 205 -QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 283 (773)
Q Consensus 205 -~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k 283 (773)
+.-..++||||- .+..+|..|.+..-...-.+..+
T Consensus 432 P~HV~~IlLSATV--------------------PN~~EFA~WIGRtK~K~IyViST------------------------ 467 (1248)
T KOG0947|consen 432 PRHVNFILLSATV--------------------PNTLEFADWIGRTKQKTIYVIST------------------------ 467 (1248)
T ss_pred cccceEEEEeccC--------------------CChHHHHHHhhhccCceEEEEec------------------------
Confidence 233458999993 44567888887643221111100
Q ss_pred hHHhhcCCCceeEEEEec--CC----HHHHHHHHHHHHhcc------cccc----cCCCccchHHHHHHHHHHHhCCCCc
Q 004103 284 DEVEKYLPGKSQVILKCD--MS----AWQKVYYQQVTDVGR------VGLD----TGTGKSKSLQNLSMQLRKCCNHPYL 347 (773)
Q Consensus 284 ~dv~~~LP~k~e~~v~~~--~s----~~q~~~Y~~i~~~~~------~~~~----~~~~~~~~~~~~~~~Lrk~~~hP~l 347 (773)
...|-.-++.+++. +- .-...++..+..... .... .+.+...+ .. .-...++-
T Consensus 468 ----~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs-~~------~ggk~~~~ 536 (1248)
T KOG0947|consen 468 ----SKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGS-QK------RGGKTNYH 536 (1248)
T ss_pred ----CCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccc-cc------cCCcCCCC
Confidence 01233445555554 11 111112221111000 0000 00000000 00 00000000
Q ss_pred ccccccchhhHHHHhhcchHHHHHHHHHHhhhc-CCcEEEEeecHHHHHHHHHHHHhCCC--------------------
Q 004103 348 FVGEYNMWRKEEIIRASGKFELLDRLLPKLRKS-GHRVLLFSQMTRLMDILEIYLKLNDF-------------------- 406 (773)
Q Consensus 348 ~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~-g~kvLIFsq~~~~ld~L~~~L~~~g~-------------------- 406 (773)
.-+....+ .-....|-.....++..++.. --.+||||-...-+|.-+++|....+
T Consensus 537 ~g~~r~~~----~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rL 612 (1248)
T KOG0947|consen 537 NGGSRGSG----IGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARL 612 (1248)
T ss_pred CCCccccc----ccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhc
Confidence 00000000 000011112344555555443 35899999988888888877764332
Q ss_pred -------------------eEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCC------
Q 004103 407 -------------------KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDS------ 461 (773)
Q Consensus 407 -------------------~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~------ 461 (773)
.+...||+.-+--++-+---|+.|=.+ +|.+|...+.|+|++ |.+|||-..
T Consensus 613 k~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVK---VLFATETFAMGVNMP-ARtvVF~Sl~KhDG~ 688 (1248)
T KOG0947|consen 613 KGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVK---VLFATETFAMGVNMP-ARTVVFSSLRKHDGN 688 (1248)
T ss_pred ChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceE---EEeehhhhhhhcCCC-ceeEEeeehhhccCc
Confidence 144556666665555555668876554 799999999999986 556665443
Q ss_pred ---CCChhhHHHHhhhhhhcCCcCeEEEEEEEeC
Q 004103 462 ---DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 492 (773)
Q Consensus 462 ---~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~ 492 (773)
.-+|..|.|..|||+|-|=...-+|..++..
T Consensus 689 efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 689 EFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred ceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 3579999999999999998777666666654
No 133
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.33 E-value=1.4e-10 Score=141.68 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=76.9
Q ss_pred HHHHHHHh-hhcCCcEEEEeecHHHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc
Q 004103 370 LDRLLPKL-RKSGHRVLLFSQMTRLMDILEIYLKL----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 370 L~~ll~~l-~~~g~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
+.+.+.++ ...+.++|||+.....++.+...|.. .+++... .+.. ..|.+++++|+.++.. +|++|...
T Consensus 662 ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~--q~~~-~~r~~ll~~F~~~~~~---iLlgt~sf 735 (850)
T TIGR01407 662 IASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA--QGIN-GSRAKIKKRFNNGEKA---ILLGTSSF 735 (850)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe--cCCC-ccHHHHHHHHHhCCCe---EEEEccee
Confidence 33344333 33566999999999999999999875 3444332 2222 4789999999986554 78899999
Q ss_pred cccCCcccC--CeeEEeCCCC-Chh-----------------------------hHHHHhhhhhhcCCcCeE
Q 004103 445 GLGLNLQTA--DTVIIFDSDW-NPQ-----------------------------MDQQAEDRAHRIGQKKEV 484 (773)
Q Consensus 445 g~GLNL~~a--d~VI~~D~~w-Np~-----------------------------~~~Qa~gRa~RiGQ~k~V 484 (773)
.+|||+++. ..||+.-.|+ +|. ...|++||+.|-.+.+-+
T Consensus 736 ~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~ 807 (850)
T TIGR01407 736 WEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGS 807 (850)
T ss_pred ecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEE
Confidence 999999974 5777777665 232 355888888887655544
No 134
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.32 E-value=6.8e-10 Score=129.37 Aligned_cols=322 Identities=18% Similarity=0.249 Sum_probs=180.1
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-- 129 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p-- 129 (773)
|..|...|.-=...++ .+..--+..+||+|||.-.+....++...+ ++++||+|+ .|+.|-.+.+.++.+
T Consensus 80 G~~~ws~QR~WakR~~----rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg---kr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 80 GFRPWSAQRVWAKRLV----RGKSFAIIAPTGVGKTTFGLLMSLYLAKKG---KRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred CCCchHHHHHHHHHHH----cCCceEEEcCCCCchhHHHHHHHHHHHhcC---CeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 4577888875443333 355545556899999987766666665542 588999999 666778888888873
Q ss_pred ---CceEEEecCC--hhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc
Q 004103 130 ---SIAAVVYDGR--PDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY 204 (773)
Q Consensus 130 ---~~~v~~~~g~--~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~ 204 (773)
...++ |++. ..++....+.+.+ ++|||+|||-+.+.++...|.+.+|++|+||.++-+.... +.
T Consensus 153 ~~~~~~~~-yh~~l~~~ekee~le~i~~--gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~Lkas-kN------- 221 (1187)
T COG1110 153 GSLDVLVV-YHSALPTKEKEEALERIES--GDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKAS-KN------- 221 (1187)
T ss_pred CCcceeee-eccccchHHHHHHHHHHhc--CCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhcc-cc-------
Confidence 33344 8886 4455555555544 8999999999999999999999999999999988652111 11
Q ss_pred ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhh
Q 004103 205 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 284 (773)
Q Consensus 205 ~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~ 284 (773)
.++.|.|.|=|- ..+..-|.++.+- .... +.....++.+.++..-.++.+.
T Consensus 222 -vDriL~LlGf~e-E~i~~a~~~~~lr-----------~~~~----------------~~~~~~~~~e~~~~~e~~~~~~ 272 (1187)
T COG1110 222 -VDRLLRLLGFSE-EVIESAYELIKLR-----------RKLY----------------GEKRAERVREELREVEREREKK 272 (1187)
T ss_pred -HHHHHHHcCCCH-HHHHHHHHHHHHH-----------HHhh----------------hhhhHHHHHHHHHHHHHHHHHh
Confidence 112222333220 0000011111000 0000 0000111111111111010000
Q ss_pred HHhhcCCCceeEEEEec--CCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHh
Q 004103 285 EVEKYLPGKSQVILKCD--MSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIR 362 (773)
Q Consensus 285 dv~~~LP~k~e~~v~~~--~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~ 362 (773)
......-.+-... .-..-..+|+.++.... ++ .... ||.+.+ +..
T Consensus 273 ----r~k~g~LvvsSATg~~rg~R~~LfReLlgFev-----G~-~~~~-------LRNIvD----------------~y~ 319 (1187)
T COG1110 273 ----RRKLGILVVSSATGKPRGSRLKLFRELLGFEV-----GS-GGEG-------LRNIVD----------------IYV 319 (1187)
T ss_pred ----ccCCceEEEeeccCCCCCchHHHHHHHhCCcc-----Cc-cchh-------hhheee----------------eec
Confidence 0000111110000 00112233333332111 11 0011 111110 001
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeec---HHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEE
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQM---TRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 439 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~---~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~Ll 439 (773)
.++-.+.+.++++++ |.-.|||.+- .+.++.|.++|..+|+++..++. ...+.++.|..|+.++-|=+.
T Consensus 320 ~~~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a-----~~~~~le~F~~GeidvLVGvA 391 (1187)
T COG1110 320 ESESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA-----EKEEALEDFEEGEVDVLVGVA 391 (1187)
T ss_pred cCccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec-----cchhhhhhhccCceeEEEEec
Confidence 123344555666665 6689999998 88999999999999999998876 236789999999987433222
Q ss_pred e-cccccccCCccc-CCeeEEeCCC
Q 004103 440 S-TRAGGLGLNLQT-ADTVIIFDSD 462 (773)
Q Consensus 440 S-t~agg~GLNL~~-ad~VI~~D~~ 462 (773)
| ..++-+|||||. +..+||+..|
T Consensus 392 syYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 392 SYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ccccceeecCCchhheeEEEEecCC
Confidence 2 345668999985 7999999988
No 135
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.28 E-value=1.7e-11 Score=122.00 Aligned_cols=128 Identities=18% Similarity=0.227 Sum_probs=86.2
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCC--CEEEEeCC-cchHHHHHHH---Hhhc
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTG--PHVIVAPK-AVLPNWINEF---STWA 128 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~g--p~LIVvP~-sll~qW~~E~---~k~~ 128 (773)
.+..-|.+++...+ -+...+...-.|+|||.... ++.|..-.+..| .+||+|.+ .+..|...|+ .++.
T Consensus 64 hpsevqhecipqai----lgmdvlcqaksgmgktavfv--l~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskym 137 (387)
T KOG0329|consen 64 HPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFV--LATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYM 137 (387)
T ss_pred CchHhhhhhhhHHh----hcchhheecccCCCceeeee--hhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhC
Confidence 56667888887666 25566777889999996642 333333334444 56888887 6777776665 4567
Q ss_pred CCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhH--HHHhhcCeeEEEEccccccCC
Q 004103 129 PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKN 192 (773)
Q Consensus 129 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaH~lkn 192 (773)
|++++.+|.|.-...+. ...+. .-++|++.|+..+..-. ..|..-+..+.|+|||..+..
T Consensus 138 P~vkvaVFfGG~~Ikkd--ee~lk--~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle 199 (387)
T KOG0329|consen 138 PSVKVSVFFGGLFIKKD--EELLK--NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE 199 (387)
T ss_pred CCceEEEEEcceecccc--HHHHh--CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH
Confidence 99999999987643322 11222 36789999999886542 234445678899999998743
No 136
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=1.6e-09 Score=127.74 Aligned_cols=121 Identities=18% Similarity=0.233 Sum_probs=99.2
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
...|+.++.+-+..+.+.|..|||-+.++..-+.|..+|...|+++-.++.... ++-.++|. ++|... .+-|+|.
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~~G--aVTIATN 505 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGRPG--ALTIATN 505 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCCCC--cEEEecc
Confidence 456999999999999999999999999999999999999999999988887643 33344555 344433 3789999
Q ss_pred cccccCCccc-------------------------------------CCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEE
Q 004103 443 AGGLGLNLQT-------------------------------------ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVR 485 (773)
Q Consensus 443 agg~GLNL~~-------------------------------------ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~ 485 (773)
.+|+|-|+.= -=+||.-+.+-|-..+.|..||++|.|..-...
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 9999999751 237899999999999999999999999887655
Q ss_pred EEE
Q 004103 486 VFV 488 (773)
Q Consensus 486 V~r 488 (773)
.|.
T Consensus 586 f~l 588 (913)
T PRK13103 586 FYL 588 (913)
T ss_pred EEE
Confidence 543
No 137
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.25 E-value=1.8e-09 Score=126.38 Aligned_cols=155 Identities=21% Similarity=0.177 Sum_probs=110.1
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~ 132 (773)
..|-+-|..++..+.+........+|...||+|||-.-+-+|...+..+ +-+||+||- ++..|-...|+..|+ .+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg-~~ 272 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG-AK 272 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC-CC
Confidence 4788999999999887652334468999999999999999998888764 478999998 999998889988886 67
Q ss_pred EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEcccccc--CChhh------HHHHHHHcc
Q 004103 133 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRL--KNHEC------ALAKTISGY 204 (773)
Q Consensus 133 v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~l--kn~~s------~~~~~l~~~ 204 (773)
+.+++..-..............+...|||.|-..+..-. -+-.+|||||=|.- |..+. -++......
T Consensus 273 v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf-----~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPF-----KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred hhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCch-----hhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 777776443333322222223378899999988774322 24578999999984 33322 111222333
Q ss_pred ccceEEEecCCCC
Q 004103 205 QIQRRLLLTGTPI 217 (773)
Q Consensus 205 ~~~~rllLTgTP~ 217 (773)
.....+|-||||-
T Consensus 348 ~~~pvvLgSATPS 360 (730)
T COG1198 348 ENAPVVLGSATPS 360 (730)
T ss_pred hCCCEEEecCCCC
Confidence 5566788999994
No 138
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.24 E-value=2e-10 Score=136.94 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=110.4
Q ss_pred CCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCC
Q 004103 52 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS 130 (773)
Q Consensus 52 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~ 130 (773)
.+.+|-|+|.+++.-+- .+.+.++|.+||+|||+++-.+++..+..+ .+++...|. .+.+|=.++|..-+.+
T Consensus 116 ~~F~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~~~---qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALRDG---QRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHHcC---CceEeccchhhhhhhHHHHHHHHhhh
Confidence 35799999999996655 688899999999999999987777666543 248999997 6666677777666643
Q ss_pred c--eEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChhh-HHH-HHHHcc
Q 004103 131 I--AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHEC-ALA-KTISGY 204 (773)
Q Consensus 131 ~--~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~s-~~~-~~l~~~ 204 (773)
+ .+-+++|...- ..+..++|+|-|.+.+-... -.......||+||.|.+....- ..+ ..+..+
T Consensus 189 v~~~vGL~TGDv~I-----------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 189 VADMVGLMTGDVSI-----------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred hhhhccceecceee-----------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 2 23455554321 26677888888888653211 1122456799999999966432 233 333444
Q ss_pred ccc-eEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcc
Q 004103 205 QIQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNA 248 (773)
Q Consensus 205 ~~~-~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~ 248 (773)
+.. +.++|||| .++..+|..|+..
T Consensus 258 P~~v~~v~LSAT--------------------v~N~~EF~~Wi~~ 282 (1041)
T COG4581 258 PDHVRFVFLSAT--------------------VPNAEEFAEWIQR 282 (1041)
T ss_pred CCCCcEEEEeCC--------------------CCCHHHHHHHHHh
Confidence 443 78999999 3566788999874
No 139
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.23 E-value=1.8e-10 Score=122.51 Aligned_cols=208 Identities=23% Similarity=0.314 Sum_probs=128.7
Q ss_pred eeEEEEecCCHHHHHHHHHHHHhcccccc----cCC-----------CccchHHHHHHHHHHHhCCCCcccccccc----
Q 004103 294 SQVILKCDMSAWQKVYYQQVTDVGRVGLD----TGT-----------GKSKSLQNLSMQLRKCCNHPYLFVGEYNM---- 354 (773)
Q Consensus 294 ~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~----~~~-----------~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~---- 354 (773)
.++.+..+|++.|+++|+.+.......+. ... .....+..+..+|+.+|+||+|....+.+
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 36788999999999999998764432211 111 11245666778899999999997765432
Q ss_pred --hhhHHHHhhcchHHHHHHHHHHh-----hhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHH---
Q 004103 355 --WRKEEIIRASGKFELLDRLLPKL-----RKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL--- 424 (773)
Q Consensus 355 --~~~~~l~~~s~K~~~L~~ll~~l-----~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i--- 424 (773)
...+.+...|+||.+|.+++..+ ...+.+++|.++...++|+|+.+|..+++.|-|++|..-.++....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~ 163 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNG 163 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccc
Confidence 23566789999999999999999 67788999999999999999999999999999999986665544333
Q ss_pred ---------Hhh-cCCCCCcEEEEEeccccccc----CCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEE
Q 004103 425 ---------KQF-NAPDSPYFMFLLSTRAGGLG----LNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLV 490 (773)
Q Consensus 425 ---------~~F-n~~~~~~~v~LlSt~agg~G----LNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi 490 (773)
... ..+.....++|++++-.... ++-...|.||-||+.+++....-..-|...-.+ +.+-|++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv 242 (297)
T PF11496_consen 164 NTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLV 242 (297)
T ss_dssp ------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEE
T ss_pred ccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEe
Confidence 111 12334566777776654431 333357899999999998876554555443333 789999999
Q ss_pred eCCCHHHHHHHH
Q 004103 491 SVGSIEEVILER 502 (773)
Q Consensus 491 ~~~tiEe~i~~~ 502 (773)
..+|+|..++..
T Consensus 243 ~~nSiEHi~L~~ 254 (297)
T PF11496_consen 243 PSNSIEHIELCF 254 (297)
T ss_dssp ETTSHHHHHHHH
T ss_pred eCCCHHHHHHHc
Confidence 999999998765
No 140
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.18 E-value=3.1e-10 Score=127.67 Aligned_cols=358 Identities=17% Similarity=0.184 Sum_probs=191.7
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~ 132 (773)
.+|-|+|..+|. ...++...++..-|..|||++|=.+|+.-+..+ .+++.-.|- .|-+|=.+|+..-|.++
T Consensus 128 F~LDpFQ~~aI~----Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k---QRVIYTSPIKALSNQKYREl~~EF~DV- 199 (1041)
T KOG0948|consen 128 FTLDPFQSTAIK----CIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK---QRVIYTSPIKALSNQKYRELLEEFKDV- 199 (1041)
T ss_pred cccCchHhhhhh----hhcCCceEEEEeecCCCcchHHHHHHHHHHHhc---CeEEeeChhhhhcchhHHHHHHHhccc-
Confidence 588899998884 444777888888899999999865555444432 377888897 45555677777655443
Q ss_pred EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHh----HHHHhhcCeeEEEEccccccCChhhH-HH-HHHHcc-c
Q 004103 133 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD----RQYLKKVQWIYMIVDEGHRLKNHECA-LA-KTISGY-Q 205 (773)
Q Consensus 133 v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~----~~~l~~~~~~~vIiDEaH~lkn~~s~-~~-~~l~~~-~ 205 (773)
-+..|...- ......+|+|-+.+..- ...+..+.| ||+||.|.|+..... .+ ..+--+ .
T Consensus 200 -GLMTGDVTI-----------nP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP~ 265 (1041)
T KOG0948|consen 200 -GLMTGDVTI-----------NPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLPD 265 (1041)
T ss_pred -ceeecceee-----------CCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEeccc
Confidence 334443221 15667899999988653 334555545 899999999764321 11 122222 3
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhH
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 285 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~d 285 (773)
.-+-++|||| .++..+|.+|.... |+.
T Consensus 266 ~vr~VFLSAT--------------------iPNA~qFAeWI~~i---------------------hkQ------------ 292 (1041)
T KOG0948|consen 266 NVRFVFLSAT--------------------IPNARQFAEWICHI---------------------HKQ------------ 292 (1041)
T ss_pred cceEEEEecc--------------------CCCHHHHHHHHHHH---------------------hcC------------
Confidence 4566899999 34556888887641 111
Q ss_pred HhhcCCCceeEEEEecCCHHHHHHHHHHHHhccccccc-CCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhc
Q 004103 286 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 364 (773)
Q Consensus 286 v~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~-~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s 364 (773)
|.+...-...+||.|..+|-.=-+--....+. +.=+...+...+.-|++.-..+--.......-.+...-..+
T Consensus 293 ------PcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~ 366 (1041)
T KOG0948|consen 293 ------PCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGP 366 (1041)
T ss_pred ------CceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCC
Confidence 11112222333444443332100000000000 00012223333333333222211000000000000000011
Q ss_pred chHHHHHHHHHHh-hhcCCcEEEEeecHHHHHHHHHHHHhCCC-------------------------------------
Q 004103 365 GKFELLDRLLPKL-RKSGHRVLLFSQMTRLMDILEIYLKLNDF------------------------------------- 406 (773)
Q Consensus 365 ~K~~~L~~ll~~l-~~~g~kvLIFsq~~~~ld~L~~~L~~~g~------------------------------------- 406 (773)
++- -+.+++..+ ......|||||-...-++.++--+....+
T Consensus 367 ~~s-~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL 445 (1041)
T KOG0948|consen 367 GDS-DIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLL 445 (1041)
T ss_pred Ccc-cHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHH
Confidence 100 122233322 24567999999887666655544432211
Q ss_pred --eEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCC--------CC-ChhhHHHHhhhh
Q 004103 407 --KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDS--------DW-NPQMDQQAEDRA 475 (773)
Q Consensus 407 --~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~--------~w-Np~~~~Qa~gRa 475 (773)
.+...|++.-+--++-+-=-|+.|=.. +|.+|...+.|||.+ |.+|+|-.. .| +...|+|..|||
T Consensus 446 ~RGIGIHHsGLLPIlKE~IEILFqEGLvK---vLFATETFsiGLNMP-AkTVvFT~~rKfDG~~fRwissGEYIQMSGRA 521 (1041)
T KOG0948|consen 446 RRGIGIHHSGLLPILKEVIEILFQEGLVK---VLFATETFSIGLNMP-AKTVVFTAVRKFDGKKFRWISSGEYIQMSGRA 521 (1041)
T ss_pred HhccccccccchHHHHHHHHHHHhccHHH---HHHhhhhhhhccCCc-ceeEEEeeccccCCcceeeecccceEEecccc
Confidence 123345555554444444457776554 688999999999986 556666432 23 677899999999
Q ss_pred hhcCCcCeEEEEEEEeCCCHHHH
Q 004103 476 HRIGQKKEVRVFVLVSVGSIEEV 498 (773)
Q Consensus 476 ~RiGQ~k~V~V~rLi~~~tiEe~ 498 (773)
+|-|-...-.|+.++ ...++..
T Consensus 522 GRRG~DdrGivIlmi-Dekm~~~ 543 (1041)
T KOG0948|consen 522 GRRGIDDRGIVILMI-DEKMEPQ 543 (1041)
T ss_pred cccCCCCCceEEEEe-cCcCCHH
Confidence 999977665554443 3344443
No 141
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=1.3e-08 Score=119.03 Aligned_cols=120 Identities=18% Similarity=0.269 Sum_probs=99.8
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
...|+.++.+-+..+.+.|..|||.|.++..-+.|..+|...|+++..++...- +.-..+|. ++|... .+.|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa--~AG~~G--aVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIA--KAGQKG--AITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHH--hCCCCC--eEEEecc
Confidence 457899999999988899999999999999999999999999999999998643 22233444 454433 4789999
Q ss_pred cccccCCcccCC--------eeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEE
Q 004103 443 AGGLGLNLQTAD--------TVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 487 (773)
Q Consensus 443 agg~GLNL~~ad--------~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~ 487 (773)
.+|+|.|+.-.. +||..+.+-|-..+.|..||++|.|..-..+.|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 999999987544 899999999999999999999999988765554
No 142
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.15 E-value=2.9e-09 Score=130.35 Aligned_cols=158 Identities=21% Similarity=0.247 Sum_probs=105.3
Q ss_pred chHHHHHHHHHHHHh-h-----cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc
Q 004103 56 LRAYQLEGLQWMLSL-F-----NNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA 128 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~-~-----~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~ 128 (773)
.+.+|..+++..+.. . ..+.+|++.|-+|+|||++++-++..+.+. .....++|||-- .|-.|-..+|..+.
T Consensus 249 ~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~ 327 (962)
T COG0610 249 QRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFG 327 (962)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHH
Confidence 344555555533222 1 234579999999999999998888888877 344466777776 77788999999987
Q ss_pred CCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH----HhhcCeeEEEEccccccCChhhHHHHHH-Hc
Q 004103 129 PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY----LKKVQWIYMIVDEGHRLKNHECALAKTI-SG 203 (773)
Q Consensus 129 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~----l~~~~~~~vIiDEaH~lkn~~s~~~~~l-~~ 203 (773)
....... .......+...+.. ..-.|+|||-+.|...... ....+.-+||+|||||-- ...+.+.+ ..
T Consensus 328 ~~~~~~~---~~~s~~~Lk~~l~~--~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G~~~~~~~~~ 400 (962)
T COG0610 328 KVAFNDP---KAESTSELKELLED--GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YGELAKLLKKA 400 (962)
T ss_pred Hhhhhcc---cccCHHHHHHHHhc--CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--ccHHHHHHHHH
Confidence 5443332 23334444444432 2446999999988764422 234466789999999963 34444444 45
Q ss_pred cccceEEEecCCCCCCCH
Q 004103 204 YQIQRRLLLTGTPIQNSL 221 (773)
Q Consensus 204 ~~~~~rllLTgTP~~n~~ 221 (773)
++...-++.||||+...-
T Consensus 401 ~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 401 LKKAIFIGFTGTPIFKED 418 (962)
T ss_pred hccceEEEeeCCcccccc
Confidence 566788999999985543
No 143
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=99.05 E-value=5.1e-11 Score=99.69 Aligned_cols=61 Identities=39% Similarity=0.663 Sum_probs=43.7
Q ss_pred hhhcccccccCccccccccCCCchhhhhccccccCCCcccCCCcccccccccCcCcCHHHHH
Q 004103 578 ENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWM 639 (773)
Q Consensus 578 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~~~~~~~~~ 639 (773)
..+.+|||+++|||+|+..+.....++.. ..........++|+|+||.|+|+|+|||+|||
T Consensus 14 ~~~p~RLm~e~ELPe~~~~d~~~~~~~~~-~e~~~~~~~~grG~R~RK~V~Y~D~LTEeQwL 74 (74)
T PF14619_consen 14 KPYPSRLMEESELPEWYREDIEEELEKEE-EEEEAETNEYGRGKRERKEVSYDDGLTEEQWL 74 (74)
T ss_pred CCCCccccchhhchHHHHhcchhhhhhhh-hhhccchhhcccccccccccccCCCCCHHHhC
Confidence 34677999999999999987764311110 01111112458999999999999999999997
No 144
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.02 E-value=2.6e-09 Score=113.53 Aligned_cols=95 Identities=21% Similarity=0.278 Sum_probs=88.5
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCC---CeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeE
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLND---FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 457 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g---~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI 457 (773)
-.+.||||....-.|-|+.++..+| |..+.++|..++.+|.+-++.|...+.. |||+|+++++|||++....+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceEE
Confidence 4599999999999999999998874 5788899999999999999999998876 999999999999999999999
Q ss_pred EeCCCCChhhHHHHhhhhhhc
Q 004103 458 IFDSDWNPQMDQQAEDRAHRI 478 (773)
Q Consensus 458 ~~D~~wNp~~~~Qa~gRa~Ri 478 (773)
+.-+|-.-+.|++|+||++|.
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999999999999999999885
No 145
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=4.8e-08 Score=117.37 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=60.1
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFST 126 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k 126 (773)
..+||.|.+-+..++....++.++++-.+||+|||+.+|+.+.......+...++++++.+ +.+.|-.+|+++
T Consensus 9 ~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 9 EKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 3569999999999999999999999999999999999886665544433334467777777 888999999988
No 146
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.97 E-value=1.6e-08 Score=105.91 Aligned_cols=231 Identities=17% Similarity=0.170 Sum_probs=139.2
Q ss_pred CCCCchHHHHHHHHHHHHhhcC------CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC-CcchHHHHHHH
Q 004103 52 QGGELRAYQLEGLQWMLSLFNN------NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-KAVLPNWINEF 124 (773)
Q Consensus 52 ~~~~LrpyQ~~gv~~l~~~~~~------~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP-~sll~qW~~E~ 124 (773)
..+.|..-|+++|-+..+.+.. +.+-+|.|.+|.||.-|..++|.+.+..+ .. +.|.|.. ..|...-.+.+
T Consensus 34 ~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-r~-r~vwvS~s~dL~~Da~RDl 111 (303)
T PF13872_consen 34 DSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-RK-RAVWVSVSNDLKYDAERDL 111 (303)
T ss_pred hcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-CC-ceEEEECChhhhhHHHHHH
Confidence 3578999999999999887653 44458999999999999989988777653 33 4455554 57777777777
Q ss_pred HhhcCC-ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhH-------HHHhhc------Ce-eEEEEccccc
Q 004103 125 STWAPS-IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR-------QYLKKV------QW-IYMIVDEGHR 189 (773)
Q Consensus 125 ~k~~p~-~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~-------~~l~~~------~~-~~vIiDEaH~ 189 (773)
...... +.+..+..-+.. . ....+..|+++||..+.... ..|..+ .| .+||+||||.
T Consensus 112 ~DIG~~~i~v~~l~~~~~~--~------~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 112 RDIGADNIPVHPLNKFKYG--D------IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK 183 (303)
T ss_pred HHhCCCcccceechhhccC--c------CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh
Confidence 655422 222222111100 0 00134569999999998763 222221 23 3899999999
Q ss_pred cCChhh------HHHHHH----HccccceEEEecCCCCCCCHHHHHHhhccc---c-CCCCCChHhHHHHhcccccccCC
Q 004103 190 LKNHEC------ALAKTI----SGYQIQRRLLLTGTPIQNSLQELWSLLNFL---L-PTIFNSVENFEEWFNAPFKDRGQ 255 (773)
Q Consensus 190 lkn~~s------~~~~~l----~~~~~~~rllLTgTP~~n~~~el~~lL~~L---~-p~~~~~~~~f~~~f~~~~~~~~~ 255 (773)
++|..+ +...++ ..++..+.+..|||.... +..|- ++.-| . -..|.+..+|.+.+... +.
T Consensus 184 akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~Nma-Ym~RLGLWG~gtpf~~~~~f~~a~~~g----Gv 257 (303)
T PF13872_consen 184 AKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMA-YMSRLGLWGPGTPFPDFDDFLEAMEKG----GV 257 (303)
T ss_pred cCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Cceee-eeeeccccCCCCCCCCHHHHHHHHHhc----Cc
Confidence 999654 344443 345667899999998732 23321 11211 1 12466666665544321 10
Q ss_pred ccCChHHHHHHHHHHHhh--hhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHH
Q 004103 256 VALTDEEQLLIIRRLHHV--IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQ 312 (773)
Q Consensus 256 ~~~~~~~~~~~~~~L~~~--L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~ 312 (773)
...+-+..- .+..+++|..+ +-.....++.+++++.|..+|+.
T Consensus 258 ---------~amE~vA~dlKa~G~yiaR~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 258 ---------GAMEMVAMDLKARGMYIARQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred ---------hHHHHHHHHHHhcchheeeecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 001111111 12334444432 55667788999999999999974
No 147
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.96 E-value=1.2e-07 Score=116.71 Aligned_cols=96 Identities=20% Similarity=0.276 Sum_probs=66.2
Q ss_pred HHHHHHHHHhh-hcCCcEEEEeecHHHHHHHHHHHHhCCC--eEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc
Q 004103 368 ELLDRLLPKLR-KSGHRVLLFSQMTRLMDILEIYLKLNDF--KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 368 ~~L~~ll~~l~-~~g~kvLIFsq~~~~ld~L~~~L~~~g~--~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
..+.+.|..+. ..+.++|||+.+.++++.+.+.|..... .+..+.=+++...|.+++++|+.++.. +|+.+...
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~---iLlG~~sF 814 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA---ILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe---EEEecCcc
Confidence 34444444433 4566899999999999999998865422 122222222224578999999875544 68888999
Q ss_pred cccCCccc--CCeeEEeCCCC-Chh
Q 004103 445 GLGLNLQT--ADTVIIFDSDW-NPQ 466 (773)
Q Consensus 445 g~GLNL~~--ad~VI~~D~~w-Np~ 466 (773)
.+|||+++ +..||+.-.|+ +|.
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCC
Confidence 99999997 48899988777 443
No 148
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.96 E-value=1.3e-08 Score=118.43 Aligned_cols=153 Identities=21% Similarity=0.177 Sum_probs=94.7
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHH-HHHHHHhcCCCCCEEEEeCCcchHH-HHHHHHhhcC--C
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLENKGVTGPHVIVAPKAVLPN-WINEFSTWAP--S 130 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aial-i~~l~~~~~~~gp~LIVvP~sll~q-W~~E~~k~~p--~ 130 (773)
+++++|.+++. ......+.|.|.+.+++.|||+++=.+ +..++..+ +.+|.+.|-..+.+ =..++..+.- +
T Consensus 223 ~~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r---r~~llilp~vsiv~Ek~~~l~~~~~~~G 297 (1008)
T KOG0950|consen 223 KLFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR---RNVLLILPYVSIVQEKISALSPFSIDLG 297 (1008)
T ss_pred HHHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh---hceeEecceeehhHHHHhhhhhhccccC
Confidence 67788888774 233447888999999999999997333 33333332 36788888744433 4445555542 4
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhc----CeeEEEEccccccC--ChhhHHHHHHHcc
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKV----QWIYMIVDEGHRLK--NHECALAKTISGY 204 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~----~~~~vIiDEaH~lk--n~~s~~~~~l~~~ 204 (773)
+.+-.|.|....... ...-.|.|.|.|.-......|-.. ...+|||||-|.+. ..+..+-..+..+
T Consensus 298 ~~ve~y~g~~~p~~~--------~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~ 369 (1008)
T KOG0950|consen 298 FPVEEYAGRFPPEKR--------RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKI 369 (1008)
T ss_pred CcchhhcccCCCCCc--------ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHH
Confidence 555566654321111 134579999999887776665432 45699999999984 3333333333222
Q ss_pred ----c--cceEEEecCCCCCCC
Q 004103 205 ----Q--IQRRLLLTGTPIQNS 220 (773)
Q Consensus 205 ----~--~~~rllLTgTP~~n~ 220 (773)
. .-..++||||-.++.
T Consensus 370 ~y~~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 370 LYENLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred HHhccccceeEeeeecccCChH
Confidence 1 224699999954443
No 149
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.95 E-value=3.9e-07 Score=106.15 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc
Q 004103 60 QLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA 128 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~ 128 (773)
|.+-+.++...+.++...++-.+||+|||+..+..+...... ....++||++|+ .+..|+..++..+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-RPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-ccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 777788888888888878888999999999977665443332 124689999999 77788888776544
No 150
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.93 E-value=3.5e-07 Score=107.86 Aligned_cols=85 Identities=14% Similarity=0.224 Sum_probs=68.6
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCC-CHHHHHHHHHhhcCCCCCcEEEEEec
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGST-KTEERGTLLKQFNAPDSPYFMFLLST 441 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~-~~~eR~~~i~~Fn~~~~~~~v~LlSt 441 (773)
...|+.++.+-+....+.|..|||-|.++..-+.|..+|...|+++..++... ..++-.++|.+ +|... .+-|+|
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G--~VTIAT 481 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKG--SITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCC--cEEEec
Confidence 34588888888888889999999999999999999999999999999999874 33444556665 33333 379999
Q ss_pred ccccccCCcc
Q 004103 442 RAGGLGLNLQ 451 (773)
Q Consensus 442 ~agg~GLNL~ 451 (773)
..+|+|.|+.
T Consensus 482 NMAGRGTDI~ 491 (870)
T CHL00122 482 NMAGRGTDII 491 (870)
T ss_pred cccCCCcCee
Confidence 9999997753
No 151
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.89 E-value=8.6e-08 Score=111.12 Aligned_cols=164 Identities=20% Similarity=0.124 Sum_probs=106.5
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc--CC
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--PS 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~--p~ 130 (773)
..+-.+|.+-+. ....+...++..++-+|||...-.++...++. ...+-++.|+|+ +++.|-..++..-+ +.
T Consensus 510 F~Pd~WQ~elLD----svDr~eSavIVAPTSaGKTfisfY~iEKVLRe-sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 510 FCPDEWQRELLD----SVDRNESAVIVAPTSAGKTFISFYAIEKVLRE-SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred cCCcHHHHHHhh----hhhcccceEEEeeccCCceeccHHHHHHHHhh-cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 455668877653 33467778999999999999988888777765 455688999998 77777666654332 22
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH---Hhh--cCeeEEEEccccccCCh-hhHHHHHHHcc
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKK--VQWIYMIVDEGHRLKNH-ECALAKTISGY 204 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~---l~~--~~~~~vIiDEaH~lkn~-~s~~~~~l~~~ 204 (773)
....+ .. ...+.+...-..-.++|+||-++.+..-.-. -.+ -+..|||+||+|.+.+. .+.++..+-.+
T Consensus 585 ~~rg~----sl-~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l 659 (1330)
T KOG0949|consen 585 FLRGV----SL-LGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL 659 (1330)
T ss_pred cccch----hh-HhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh
Confidence 11111 10 0111111111124678999999887653111 111 15679999999999875 45666666666
Q ss_pred ccceEEEecCCCCCCCHHHHHHhhc
Q 004103 205 QIQRRLLLTGTPIQNSLQELWSLLN 229 (773)
Q Consensus 205 ~~~~rllLTgTP~~n~~~el~~lL~ 229 (773)
-....|.|||| .+|+..++.-++
T Consensus 660 i~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 660 IPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred cCCCeeEEecc--cCCHHHHHHHHH
Confidence 67788999999 677776666555
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.89 E-value=3.6e-07 Score=109.36 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=78.9
Q ss_pred hhcCCcEEEEeecHHHHHHHHHHHHhCCC-eEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCccc--CC
Q 004103 378 RKSGHRVLLFSQMTRLMDILEIYLKLNDF-KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT--AD 454 (773)
Q Consensus 378 ~~~g~kvLIFsq~~~~ld~L~~~L~~~g~-~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~--ad 454 (773)
...+.++|||+.+-..|+.+.+.|..... -.+...|..+. ..+++.|...... .|++.+....+|||++. +.
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEG--LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCC--eEEEeeccccCcccCCCCCee
Confidence 34555999999999999999999987765 34555565553 4889999886653 48999999999999997 58
Q ss_pred eeEEeCCCCC-hh-----------------------------hHHHHhhhhhhcCCcCeEE
Q 004103 455 TVIIFDSDWN-PQ-----------------------------MDQQAEDRAHRIGQKKEVR 485 (773)
Q Consensus 455 ~VI~~D~~wN-p~-----------------------------~~~Qa~gRa~RiGQ~k~V~ 485 (773)
.||+.-.|+- |. ...|++||+.|--+.+-|.
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~i 611 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVI 611 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEE
Confidence 8999888873 43 5669999999954444443
No 153
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.88 E-value=5.4e-07 Score=109.26 Aligned_cols=89 Identities=11% Similarity=0.110 Sum_probs=65.1
Q ss_pred HHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccC
Q 004103 369 LLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 448 (773)
Q Consensus 369 ~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GL 448 (773)
.+.+.+..+...+.++||++.+.++++.+.+.|....++. ...|... .|..++++|+.++.. +|+.|....+||
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 4444454455667799999999999999999887665544 5556433 356789999885554 788999999999
Q ss_pred Cccc--CCeeEEeCCCC
Q 004103 449 NLQT--ADTVIIFDSDW 463 (773)
Q Consensus 449 NL~~--ad~VI~~D~~w 463 (773)
|++. +..||+.-.|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 9973 56677776663
No 154
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.85 E-value=6e-08 Score=115.86 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=50.1
Q ss_pred CccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCChhhHHHHHHHcc----ccceEEEecCCCCCC--CHHHHHHh
Q 004103 156 RFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHECALAKTISGY----QIQRRLLLTGTPIQN--SLQELWSL 227 (773)
Q Consensus 156 ~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~----~~~~rllLTgTP~~n--~~~el~~l 227 (773)
...|++.|...+..|.- .+.--.+..|||||||++.+ ++..+-+++.| +..+..++|+.|-.- ....+-.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~-~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~v 85 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIE-SSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETK 85 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccc-cccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHH
Confidence 44699999999988742 23333578999999999964 44444444444 456789999999753 33444444
Q ss_pred hccc
Q 004103 228 LNFL 231 (773)
Q Consensus 228 L~~L 231 (773)
+.-|
T Consensus 86 mk~L 89 (814)
T TIGR00596 86 MRNL 89 (814)
T ss_pred HHHh
Confidence 4444
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.83 E-value=8.2e-07 Score=105.65 Aligned_cols=120 Identities=16% Similarity=0.266 Sum_probs=98.1
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
...|+.++.+-+..+.+.|..|||-+.++..-+.|..+|..+|+++-.++...-. .-.++|.+- |... .+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~-~EAeIVA~A--G~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQ-KEAEIVAEA--GQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchh-hHHHHHHhc--CCCC--cEEEecc
Confidence 4568999999999999999999999999999999999999999999888776442 223444433 2322 3789999
Q ss_pred cccccCCcc--------cCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEE
Q 004103 443 AGGLGLNLQ--------TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 487 (773)
Q Consensus 443 agg~GLNL~--------~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~ 487 (773)
.+|+|-|+. +-=+||.-+.+-|...+.|..||++|.|..-....|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999999976 234889999999999999999999999987665444
No 156
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.74 E-value=2.8e-06 Score=100.22 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=69.3
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCC-CCHHHHHHHHHhhcCCCCCcEEEEEec
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGS-TKTEERGTLLKQFNAPDSPYFMFLLST 441 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~-~~~~eR~~~i~~Fn~~~~~~~v~LlSt 441 (773)
...|+.++.+-+..+.+.|..|||-+.++..-+.|...|...|+++..++.. ...+.-.++|.+ +|... .+-|+|
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G--aVTIAT 496 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG--AVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC--cEEEec
Confidence 3578999999998999999999999999999999999999999999999986 343444556665 33333 378999
Q ss_pred ccccccCCcc
Q 004103 442 RAGGLGLNLQ 451 (773)
Q Consensus 442 ~agg~GLNL~ 451 (773)
..+|+|-|+.
T Consensus 497 NMAGRGTDIk 506 (939)
T PRK12902 497 NMAGRGTDII 506 (939)
T ss_pred cCCCCCcCEe
Confidence 9999997653
No 157
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.68 E-value=3.7e-06 Score=95.37 Aligned_cols=112 Identities=20% Similarity=0.233 Sum_probs=78.7
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhC----CC----eEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCccc
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLN----DF----KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 452 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~----g~----~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ 452 (773)
..-+|||=.-.+-.+.+.+.|... +- -+.-++|+++.++..++ |.......+-+++||..+...|.+.+
T Consensus 258 ~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~G 334 (674)
T KOG0922|consen 258 PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDG 334 (674)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecc
Confidence 347899988776666666655433 21 25779999999877554 65555456678999999999999999
Q ss_pred CCeeEEeC----CCCCh-----------hhHHHHhhhhhhcCCcCeEEEEEEEeCCCH
Q 004103 453 ADTVIIFD----SDWNP-----------QMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 495 (773)
Q Consensus 453 ad~VI~~D----~~wNp-----------~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ti 495 (773)
...||=-. ..||| ..-.||.-|++|.|.+.+..+|||.++.-.
T Consensus 335 I~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 335 IRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred eEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 88776211 12343 234566666777777889999999998665
No 158
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.67 E-value=1.7e-06 Score=103.13 Aligned_cols=111 Identities=21% Similarity=0.236 Sum_probs=81.0
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCe
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKL----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADT 455 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~ 455 (773)
...-+|||-.-..-.+.+.+.|.. ....++-++|..+.++...+ |+......+-+++||..+..+|.++++..
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRY 334 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEE
Confidence 355899998888777777777766 45889999999999888774 55434443447999999999999999998
Q ss_pred eEE--------eCCC----------CChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHH
Q 004103 456 VII--------FDSD----------WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 496 (773)
Q Consensus 456 VI~--------~D~~----------wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiE 496 (773)
||= ||+- -+-+.-.||.|||+| +.+-..|||.+++..+
T Consensus 335 VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 335 VIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred EecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 873 3322 122345576666666 5688899999985544
No 159
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.67 E-value=1.4e-06 Score=103.71 Aligned_cols=127 Identities=20% Similarity=0.327 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHhhhc--CCcEEEEeecHHHHHHHHHHHHh----C---CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcE
Q 004103 365 GKFELLDRLLPKLRKS--GHRVLLFSQMTRLMDILEIYLKL----N---DFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 435 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~--g~kvLIFsq~~~~ld~L~~~L~~----~---g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~ 435 (773)
-...++..++..+... ...+|||-.-..-+..+...|.. . .+-+..+|+.++..+.+.+ |+.+..+++
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 3556666666665443 45899999887777666666643 2 3678889999999777665 666566666
Q ss_pred EEEEecccccccCCcccCCeeE--------EeCCC---------C-ChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHH
Q 004103 436 MFLLSTRAGGLGLNLQTADTVI--------IFDSD---------W-NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEE 497 (773)
Q Consensus 436 v~LlSt~agg~GLNL~~ad~VI--------~~D~~---------w-Np~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe 497 (773)
-+|++|..+...|.+.++-+|| .||+. | +-+.-.||.|||+| ..+-.+|+|.+..-.+.
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhhh
Confidence 6899999999999999887775 35543 2 33456788888877 56788999998754443
No 160
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.66 E-value=3.2e-06 Score=96.27 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=68.2
Q ss_pred HhhcCCCCCcEEEEEecccccccCCcccCCee--------EEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHH
Q 004103 425 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV--------IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 496 (773)
Q Consensus 425 ~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~V--------I~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiE 496 (773)
++|-+|+.. | -|-+.|++-||.||+-.+| |-+++||+...-+|..||.||-.|.+......||++-.-|
T Consensus 851 qrFM~GeK~--v-AIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 851 QRFMDGEKL--V-AIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred hhhccccce--e-eeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 456665533 4 4445788999999985443 5599999999999999999999999988888888887777
Q ss_pred HHHHHHHHHHHhHHHHHHHc
Q 004103 497 EVILERAKQKMGIDAKVIQA 516 (773)
Q Consensus 497 e~i~~~~~~K~~l~~~vi~~ 516 (773)
.+......+++.-..+.-.+
T Consensus 928 rRFAS~VAKRLESLGALThG 947 (1300)
T KOG1513|consen 928 RRFASIVAKRLESLGALTHG 947 (1300)
T ss_pred hHHHHHHHHHHHhhcccccc
Confidence 77777777776655554443
No 161
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.64 E-value=8.3e-06 Score=97.66 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHhhcC----CCCCcEEEEEecc
Q 004103 368 ELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-DFKFLRLDGSTKTEERGTLLKQFNA----PDSPYFMFLLSTR 442 (773)
Q Consensus 368 ~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~i~G~~~~~eR~~~i~~Fn~----~~~~~~v~LlSt~ 442 (773)
..+.+.+..+...+.++|||+.+..+++.+...|... +++ +.+.|.. .|..+++.|.+ ++.. +|+++.
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~---VL~g~~ 593 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGS---VLFGLQ 593 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCe---EEEEec
Confidence 3444555444445556899999899999999888643 333 4456642 57788877753 3333 688889
Q ss_pred cccccCCccc--CCeeEEeCCCC
Q 004103 443 AGGLGLNLQT--ADTVIIFDSDW 463 (773)
Q Consensus 443 agg~GLNL~~--ad~VI~~D~~w 463 (773)
...+|||+++ +..||+.-.|+
T Consensus 594 sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 594 SFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred cccccccCCCCceEEEEEEcCCC
Confidence 9999999986 78999988775
No 162
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.61 E-value=2.6e-07 Score=110.53 Aligned_cols=169 Identities=20% Similarity=0.223 Sum_probs=104.5
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcch-HHHHHH---------HHhhcCC--ceEEEecCCh--
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL-PNWINE---------FSTWAPS--IAAVVYDGRP-- 140 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll-~qW~~E---------~~k~~p~--~~v~~~~g~~-- 140 (773)
.+..+..+||+|||.+++.+|.+|....+. ..+|||||...+ .-...- |...+++ +...+|....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~-~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGL-FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 355788999999999999999999887554 589999998443 223222 2333333 4555665432
Q ss_pred -hHH----HHHHHHHHhh----cCCccEEEcCHHHHHHhHH--H----H--hh--cCee-------EEEEccccccCChh
Q 004103 141 -DER----KAMREEFFSE----RGRFNVLITHYDLIMRDRQ--Y----L--KK--VQWI-------YMIVDEGHRLKNHE 194 (773)
Q Consensus 141 -~~r----~~~~~~~~~~----~~~~~VvItTye~l~~~~~--~----l--~~--~~~~-------~vIiDEaH~lkn~~ 194 (773)
..| ..+.. +... ....+|+|+|.+.+.++.. . + .. ..|+ +||+||+|++.. .
T Consensus 139 k~gr~~~~~~i~~-Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~ 216 (986)
T PRK15483 139 KSGRKNFPAQLSN-FVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-D 216 (986)
T ss_pred ccccccChHHHHH-HHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-c
Confidence 111 12221 2111 1257899999999876421 1 1 11 1222 899999999965 3
Q ss_pred hHHHHHHHccccceEEEecCCCCCC---------CHHHHHHhhccccCCCCCChHhHHHHhccccc
Q 004103 195 CALAKTISGYQIQRRLLLTGTPIQN---------SLQELWSLLNFLLPTIFNSVENFEEWFNAPFK 251 (773)
Q Consensus 195 s~~~~~l~~~~~~~rllLTgTP~~n---------~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~ 251 (773)
.+.+.++..+.+.+.|..|||--.. .-.+.++++--| +..++|...+.+.+.
T Consensus 217 ~k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~L-----davdAyn~~LVK~I~ 277 (986)
T PRK15483 217 NKFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFDL-----NAVDSFNDGLVKGVD 277 (986)
T ss_pred hHHHHHHHhcCcccEEEEeeecCCccccccccccccccccCceeec-----CHHHHHHhCCcceEE
Confidence 4566888999999999999995331 111345554433 456777776655443
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.47 E-value=2.2e-07 Score=87.09 Aligned_cols=127 Identities=14% Similarity=0.114 Sum_probs=68.3
Q ss_pred CCCeEEecCCCCCHHHHHHH-HHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIA-LIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFF 151 (773)
Q Consensus 74 ~~~gILademGlGKTi~aia-li~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~ 151 (773)
+.-.+|-.-+|+|||-..+. ++...+. ..+++||+.|+ .++.+-.+.++ +..+..-..... +.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~---~~~rvLvL~PTRvva~em~~aL~----~~~~~~~t~~~~-~~------- 68 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK---RRLRVLVLAPTRVVAEEMYEALK----GLPVRFHTNARM-RT------- 68 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH---TT--EEEEESSHHHHHHHHHHTT----TSSEEEESTTSS----------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH---ccCeEEEecccHHHHHHHHHHHh----cCCcccCceeee-cc-------
Confidence 33457888899999987664 3333333 34689999999 44454544443 333222221111 10
Q ss_pred hhcCCccEEEcCHHHHHHhHH-HHhhcCeeEEEEccccccCChhhHHHH-HHHcc---ccceEEEecCCCC
Q 004103 152 SERGRFNVLITHYDLIMRDRQ-YLKKVQWIYMIVDEGHRLKNHECALAK-TISGY---QIQRRLLLTGTPI 217 (773)
Q Consensus 152 ~~~~~~~VvItTye~l~~~~~-~l~~~~~~~vIiDEaH~lkn~~s~~~~-~l~~~---~~~~rllLTgTP~ 217 (773)
..+.--|-+++|.++..... -....+|++||+||||-. ++.+-... .+..+ .....+++||||-
T Consensus 69 -~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 69 -HFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred -ccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 01556688899998765322 223358999999999985 33443222 22333 2236799999995
No 164
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.47 E-value=1.5e-05 Score=89.89 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=76.5
Q ss_pred cEEEEeecH----HHHHHHHHHHHh------CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCccc
Q 004103 383 RVLLFSQMT----RLMDILEIYLKL------NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 452 (773)
Q Consensus 383 kvLIFsq~~----~~ld~L~~~L~~------~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ 452 (773)
-+|||-.-. -+.++|...|.. .++.++-|...++.+-..+ -|+.....++-+|++|..+...|.+++
T Consensus 565 dilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~k---iFq~a~~~vRK~IvATNIAETSLTi~g 641 (1042)
T KOG0924|consen 565 DILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAK---IFQKAEGGVRKCIVATNIAETSLTIPG 641 (1042)
T ss_pred CEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhh---hcccCCCCceeEEEeccchhhceeecc
Confidence 456664322 234444444432 2677888888888765544 466556667778999999999999999
Q ss_pred CCeeEEeCC----CCChh-----------hHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHH
Q 004103 453 ADTVIIFDS----DWNPQ-----------MDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVIL 500 (773)
Q Consensus 453 ad~VI~~D~----~wNp~-----------~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~ 500 (773)
...||=... .+||. .-.+|--|++|.|.+.+-..|||.|+++....|+
T Consensus 642 I~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 642 IRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred eEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 888874322 13332 2334444555555567889999999988776654
No 165
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.47 E-value=6.9e-06 Score=96.04 Aligned_cols=112 Identities=21% Similarity=0.385 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccc
Q 004103 366 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 445 (773)
Q Consensus 366 K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg 445 (773)
.......++..+ ..|+++.|||......+++++++...+.+++.++|..+..+. +.+. ++. +++=|.+..
T Consensus 268 ~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W~----~~~-VviYT~~it 337 (824)
T PF02399_consen 268 ETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESWK----KYD-VVIYTPVIT 337 (824)
T ss_pred hhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cccc----cee-EEEEeceEE
Confidence 344555555555 458999999999999999999999999999999998776532 2332 233 466677888
Q ss_pred ccCCccc--CCeeEEe--CCCCChhh--HHHHhhhhhhcCCcCeEEEEE
Q 004103 446 LGLNLQT--ADTVIIF--DSDWNPQM--DQQAEDRAHRIGQKKEVRVFV 488 (773)
Q Consensus 446 ~GLNL~~--ad~VI~~--D~~wNp~~--~~Qa~gRa~RiGQ~k~V~V~r 488 (773)
.|+++-. .|.|..| .....|.+ ..|.+||+-.+... ++.||.
T Consensus 338 vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~-ei~v~~ 385 (824)
T PF02399_consen 338 VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDN-EIYVYI 385 (824)
T ss_pred EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccC-eEEEEE
Confidence 8998864 4555555 33334554 68999999988743 444443
No 166
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.43 E-value=2.3e-05 Score=92.64 Aligned_cols=127 Identities=9% Similarity=-0.019 Sum_probs=88.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcCCccEEE
Q 004103 83 MGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLI 161 (773)
Q Consensus 83 mGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvI 161 (773)
.|+|||-..+.++...+..+ +.+||++|. ++..|+...|...++...+.++++.-..............+...|||
T Consensus 169 ~GSGKTevyl~~i~~~l~~G---k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IVi 245 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG---RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVV 245 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC---CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEE
Confidence 59999999999998888753 368999999 88899999999999766788888755444333332222347789999
Q ss_pred cCHHHHHHhHHHHhhcCeeEEEEcccccc--CChhhH----H-HHHH-HccccceEEEecCCCC
Q 004103 162 THYDLIMRDRQYLKKVQWIYMIVDEGHRL--KNHECA----L-AKTI-SGYQIQRRLLLTGTPI 217 (773)
Q Consensus 162 tTye~l~~~~~~l~~~~~~~vIiDEaH~l--kn~~s~----~-~~~l-~~~~~~~rllLTgTP~ 217 (773)
.|...+.. .--+..+|||||=|.- |..... . ...+ .....-..++-|+||-
T Consensus 246 GtRSAvFa-----P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 246 GTRSAVFA-----PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred EcceeEEe-----ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 99986622 2235689999999874 332211 1 1111 2334556688899994
No 167
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.40 E-value=0.00019 Score=86.55 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=38.6
Q ss_pred cEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCe--EEEEEE
Q 004103 434 YFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE--VRVFVL 489 (773)
Q Consensus 434 ~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~--V~V~rL 489 (773)
..+++|+|.+...|+|+ +.|.+|.-- -.....+|+.||+.|-|+... .+||.|
T Consensus 838 ~~~i~v~Tqv~E~g~D~-dfd~~~~~~--~~~~sliQ~aGR~~R~~~~~~~~~N~~i~ 892 (1110)
T TIGR02562 838 HLFIVLATPVEEVGRDH-DYDWAIADP--SSMRSIIQLAGRVNRHRLEKVQQPNIVIL 892 (1110)
T ss_pred CCeEEEEeeeEEEEecc-cCCeeeecc--CcHHHHHHHhhcccccccCCCCCCcEEEe
Confidence 44689999999999995 567666422 235678999999999998643 444433
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.40 E-value=3.9e-06 Score=89.93 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=55.2
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHH-HHHHhcC--CCCCEEEEeCC-cchHHHHHHHHhh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA-YLLENKG--VTGPHVIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~-~l~~~~~--~~gp~LIVvP~-sll~qW~~E~~k~ 127 (773)
.++||.|.+-+..+...+.++.++|+-.+||+|||+..+..+. ++..... ...++++++++ +++.+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4679999999999999988999999999999999999876664 4443322 12377888887 5555555666554
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.40 E-value=3.9e-06 Score=89.93 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=55.2
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHH-HHHHhcC--CCCCEEEEeCC-cchHHHHHHHHhh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA-YLLENKG--VTGPHVIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~-~l~~~~~--~~gp~LIVvP~-sll~qW~~E~~k~ 127 (773)
.++||.|.+-+..+...+.++.++|+-.+||+|||+..+..+. ++..... ...++++++++ +++.+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4679999999999999988999999999999999999876664 4443322 12377888887 5555555666554
No 170
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=6.4e-06 Score=94.27 Aligned_cols=110 Identities=19% Similarity=0.300 Sum_probs=66.2
Q ss_pred HHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh-cCCCCC-EE-EEeCCcch-----HHHHHHHHhhcCCceEEE-ec
Q 004103 67 MLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN-KGVTGP-HV-IVAPKAVL-----PNWINEFSTWAPSIAAVV-YD 137 (773)
Q Consensus 67 l~~~~~~~~~gILademGlGKTi~aiali~~l~~~-~~~~gp-~L-IVvP~sll-----~qW~~E~~k~~p~~~v~~-~~ 137 (773)
++...+.+.-.|+|.+||+|||.|.=-++...-.. .....| ++ |--|--+. ..-..|+..+...+...+ |.
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd 343 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFD 343 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEec
Confidence 34455677778999999999999975554322111 001113 33 33354222 234556666443344433 55
Q ss_pred CChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH-HhhcCeeEEEEccccc
Q 004103 138 GRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY-LKKVQWIYMIVDEGHR 189 (773)
Q Consensus 138 g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~-l~~~~~~~vIiDEaH~ 189 (773)
|+.. .+-.|-++|-+.+++.... +...++..|||||||.
T Consensus 344 ~ti~-------------e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 344 GTIG-------------EDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHE 383 (1172)
T ss_pred cccC-------------CCceeEEecchHHHHHHHHhHhhhhceeEEechhhh
Confidence 5443 4556999999999887543 3444789999999997
No 171
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.36 E-value=1.9e-05 Score=88.95 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=70.1
Q ss_pred CCcEEEEeecHHHHHHHHHHH----HhC-----CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcc
Q 004103 381 GHRVLLFSQMTRLMDILEIYL----KLN-----DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ 451 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L----~~~-----g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~ 451 (773)
..-+|||-.-.+-.+.....| ... .+-++-|+.+.+.+...++ |.....+.+-++++|..+...|.+.
T Consensus 473 ~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTId 549 (902)
T KOG0923|consen 473 LGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTID 549 (902)
T ss_pred CccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeec
Confidence 346777765544333333333 222 3557889999998877665 5443444566899999999999998
Q ss_pred cCCeeEEeCCC------CCh--------------hhHHHHhhhhhhcCCcCeEEEEEEEeCCC
Q 004103 452 TADTVIIFDSD------WNP--------------QMDQQAEDRAHRIGQKKEVRVFVLVSVGS 494 (773)
Q Consensus 452 ~ad~VI~~D~~------wNp--------------~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~t 494 (773)
++..|| ||- +|| +.-.||.|||+|.| +-..|||.+.-+
T Consensus 550 gI~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~~a 607 (902)
T KOG0923|consen 550 GIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTAWA 607 (902)
T ss_pred CeEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeechhh
Confidence 888876 332 344 35668888887766 666889988543
No 172
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.32 E-value=9.5e-07 Score=92.46 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=78.1
Q ss_pred HHHHhhcCCCCCcEEEEEecccccccCCcccC--------CeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 422 TLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTA--------DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 422 ~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~a--------d~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
...+.|++|... |+|+ ++||+.||.||+- .+-|.+++||+....+|..||+||-||..+..+..+++.-
T Consensus 52 ~e~~~F~~g~k~--v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD--VAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce--EEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456789998644 4444 6999999999962 2347799999999999999999999999998777888888
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHcCc
Q 004103 494 SIEEVILERAKQKMGIDAKVIQAGL 518 (773)
Q Consensus 494 tiEe~i~~~~~~K~~l~~~vi~~g~ 518 (773)
..|.+....+.+|+.-..+...+..
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt~gdr 153 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALTRGDR 153 (278)
T ss_pred HHHHHHHHHHHHHHhhccccccCcc
Confidence 8999999999999988777766543
No 173
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.23 E-value=2.4e-05 Score=86.49 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=92.6
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHh----CC----CeEEEEcCCCCHHHHHHHHHhhcCCCCCc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL----ND----FKFLRLDGSTKTEERGTLLKQFNAPDSPY 434 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~----~g----~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~ 434 (773)
.+.|+.....++.++...|-|+|-||..+.+.+++....+. -| -.+..+.|+-+.++|.++-.+.--|+..
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~- 585 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLC- 585 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeee-
Confidence 35566667778888888899999999999887776543322 11 1244577899999999988776665543
Q ss_pred EEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCc
Q 004103 435 FMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQK 481 (773)
Q Consensus 435 ~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~ 481 (773)
-+|+|.|+..|||+...|.|+++..|.+.+.+.|..|||+|-...
T Consensus 586 --giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 586 --GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred --EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 689999999999999999999999999999999999999997543
No 174
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.12 E-value=1.4e-05 Score=82.16 Aligned_cols=68 Identities=25% Similarity=0.345 Sum_probs=48.8
Q ss_pred CchHHHHHHHHHHHHhhcCCCC-eEEecCCCCCHHHHHHHHHHHHHH-----hcCCCCCEEEEeCC-cchHHHHHHHHh
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLN-GILADEMGLGKTIQTIALIAYLLE-----NKGVTGPHVIVAPK-AVLPNWINEFST 126 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~-gILademGlGKTi~aiali~~l~~-----~~~~~gp~LIVvP~-sll~qW~~E~~k 126 (773)
+|.+.|.+++..++ +... .++..++|+|||.+..+++..+.. .....+++||++|+ ..+++-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~----~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSAL----SSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHC----TSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH----cCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 47899999998776 3444 788999999999888888877742 24566799999998 677887777776
No 175
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.04 E-value=1.3e-05 Score=88.79 Aligned_cols=107 Identities=27% Similarity=0.295 Sum_probs=82.0
Q ss_pred hcCCcEEEEeecHHHHHHHHHHHHhCCC-eEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeE
Q 004103 379 KSGHRVLLFSQMTRLMDILEIYLKLNDF-KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 457 (773)
Q Consensus 379 ~~g~kvLIFsq~~~~ld~L~~~L~~~g~-~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI 457 (773)
++|.-|+-||... .=-+...+..+|. +.++|.|+.+++.|.+.-..||++++++. +|++|+|.|.|||| +.++||
T Consensus 356 k~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~d-vlVAsDAIGMGLNL-~IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECD-VLVASDAIGMGLNL-NIRRII 431 (700)
T ss_pred CCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccc-eEEeeccccccccc-ceeEEE
Confidence 4677888888642 1122333444554 49999999999999999999999887766 48899999999997 789999
Q ss_pred EeCCC---------CChhhHHHHhhhhhhcCCcCe-EEEEEE
Q 004103 458 IFDSD---------WNPQMDQQAEDRAHRIGQKKE-VRVFVL 489 (773)
Q Consensus 458 ~~D~~---------wNp~~~~Qa~gRa~RiGQ~k~-V~V~rL 489 (773)
+++.- -...+..|-.|||+|.|.+-+ -.|-.|
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl 473 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL 473 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe
Confidence 99874 345688999999999988744 444333
No 176
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00033 Score=82.87 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=89.4
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
...|+.++..-+......|.+|||-+.+...-+.+...|...|++...++..-.. |+.-+-.+ +|..+ .+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~--~EA~Iia~-AG~~g--aVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHA--REAEIIAQ-AGQPG--AVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHH--HHHHHHhh-cCCCC--ccccccc
Confidence 4568999999999999999999999999999999999999999999888876653 33322222 33332 3678999
Q ss_pred cccccCCccc-CC----------eeEEeCCCCChhhHHHHhhhhhhcCCc
Q 004103 443 AGGLGLNLQT-AD----------TVIIFDSDWNPQMDQQAEDRAHRIGQK 481 (773)
Q Consensus 443 agg~GLNL~~-ad----------~VI~~D~~wNp~~~~Qa~gRa~RiGQ~ 481 (773)
.+|+|-|+.- .+ +||--+-.-+--.+.|-.||++|.|-.
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 9999999874 33 456666666777788999999999943
No 177
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.70 E-value=0.00083 Score=80.96 Aligned_cols=110 Identities=23% Similarity=0.227 Sum_probs=78.0
Q ss_pred hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcch-----HHHHHHHHhhcCCceEEEecCChhHHH
Q 004103 70 LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL-----PNWINEFSTWAPSIAAVVYDGRPDERK 144 (773)
Q Consensus 70 ~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll-----~qW~~E~~k~~p~~~v~~~~g~~~~r~ 144 (773)
.++.+.+.+++.+.|+|||++|-.++.. ....+.++-++|...+ ..|...|... .+..++...|....-.
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~l 1229 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDL 1229 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccch
Confidence 3566778899999999999887433322 4566788999998554 4588888777 4677777777654332
Q ss_pred HHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChh
Q 004103 145 AMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHE 194 (773)
Q Consensus 145 ~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~ 194 (773)
.+. ..-+|+|.|++.+..-. .-...++.|+||.|.+.+..
T Consensus 1230 kl~-------~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1230 KLL-------QKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred HHh-------hhcceEEechhHHHHHh---hhhhcceEeeehhhhhcccC
Confidence 222 45689999999885542 22356889999999997643
No 178
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.69 E-value=0.0025 Score=70.03 Aligned_cols=63 Identities=24% Similarity=0.272 Sum_probs=47.5
Q ss_pred EEEEEecccccccCCcccCCeeEEeC----CCCC-----------hhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHH
Q 004103 435 FMFLLSTRAGGLGLNLQTADTVIIFD----SDWN-----------PQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEE 497 (773)
Q Consensus 435 ~v~LlSt~agg~GLNL~~ad~VI~~D----~~wN-----------p~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe 497 (773)
+-+++||..+...+.+.++-+||=-. .-+| |..-.||+-|++|.|.+++-..|+|.++...+.
T Consensus 314 RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~ 391 (699)
T KOG0925|consen 314 RKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEK 391 (699)
T ss_pred ceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhh
Confidence 34689999999998887776665211 1234 445678999999999999999999999865543
No 179
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.63 E-value=0.00034 Score=81.54 Aligned_cols=136 Identities=21% Similarity=0.241 Sum_probs=89.9
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHH--------HHHHH-HhhcCCc--eEEEecCCh
Q 004103 72 NNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN--------WINEF-STWAPSI--AAVVYDGRP 140 (773)
Q Consensus 72 ~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~q--------W~~E~-~k~~p~~--~v~~~~g~~ 140 (773)
....+.=+-.|||+|||.+-+-++..|-...+.. +++||||+..+.- -.+.| ...+.+. ..++|. .
T Consensus 72 ~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~-KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~--~ 148 (985)
T COG3587 72 DDKLNIDILMETGTGKTYTYLRTMFELHKKYGLF-KFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD--E 148 (985)
T ss_pred CCcceeeEEEecCCCceeeHHHHHHHHHHHhCce-eEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec--h
Confidence 3444555678999999999999998888877665 8899999743311 22334 4444433 333333 1
Q ss_pred hHHHHHHHHHHhhcCCccEEEcCHHHHHHh---HHH---------------------HhhcCeeEEEEccccccCChhhH
Q 004103 141 DERKAMREEFFSERGRFNVLITHYDLIMRD---RQY---------------------LKKVQWIYMIVDEGHRLKNHECA 196 (773)
Q Consensus 141 ~~r~~~~~~~~~~~~~~~VvItTye~l~~~---~~~---------------------l~~~~~~~vIiDEaH~lkn~~s~ 196 (773)
. .....+.....+.|++.+.+.+.++ ... |...++ .|||||-|++... .+
T Consensus 149 ~----~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rP-IvIvDEPh~f~~~-~k 222 (985)
T COG3587 149 D----IEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRP-IVIVDEPHRFLGD-DK 222 (985)
T ss_pred H----HHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCC-EEEecChhhcccc-hH
Confidence 1 1111222236778999998888765 111 222222 7999999999875 78
Q ss_pred HHHHHHccccceEEEecCCC
Q 004103 197 LAKTISGYQIQRRLLLTGTP 216 (773)
Q Consensus 197 ~~~~l~~~~~~~rllLTgTP 216 (773)
...++..+.+...|=.+||-
T Consensus 223 ~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 223 TYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred HHHHHHhhCceEEEEecccc
Confidence 88889999988888889983
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.61 E-value=0.00016 Score=73.06 Aligned_cols=148 Identities=20% Similarity=0.199 Sum_probs=68.9
Q ss_pred chHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEE
Q 004103 56 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVV 135 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~ 135 (773)
..+.|...+..+. +..-.++..+.|+|||+.|++.+.++... +...+++|+-|..-...+. -|.|+-.--.
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~l----GflpG~~~eK 75 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDL----GFLPGDLEEK 75 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT--------SS-------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCcccc----ccCCCCHHHH
Confidence 4578999998877 35567888999999999999999998887 5555777777865332221 1222110000
Q ss_pred ecCChhHHHHHHHHHHhh---------cCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcccc
Q 004103 136 YDGRPDERKAMREEFFSE---------RGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQI 206 (773)
Q Consensus 136 ~~g~~~~r~~~~~~~~~~---------~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~ 206 (773)
+...- ..+.+.+..- .....|-+.+...+.- ..+...+||||||+++. ...+...+.++..
T Consensus 76 ~~p~~---~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQN~t--~~~~k~ilTR~g~ 145 (205)
T PF02562_consen 76 MEPYL---RPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQNLT--PEELKMILTRIGE 145 (205)
T ss_dssp --TTT---HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG----HHHHHHHHTTB-T
T ss_pred HHHHH---HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcC-----ccccceEEEEecccCCC--HHHHHHHHcccCC
Confidence 00000 0000000000 0111222322222211 12345799999999884 3345556788888
Q ss_pred ceEEEecCCCCCCCHH
Q 004103 207 QRRLLLTGTPIQNSLQ 222 (773)
Q Consensus 207 ~~rllLTgTP~~n~~~ 222 (773)
..++.++|-|.|.+..
T Consensus 146 ~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 146 GSKIIITGDPSQIDLP 161 (205)
T ss_dssp T-EEEEEE--------
T ss_pred CcEEEEecCceeecCC
Confidence 9999999999877654
No 181
>PRK10536 hypothetical protein; Provisional
Probab=97.51 E-value=0.00049 Score=71.49 Aligned_cols=142 Identities=17% Similarity=0.120 Sum_probs=83.4
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEE
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV 134 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~ 134 (773)
.....|...+.++. ++...++..+.|+|||+.+++++....... ....++|+-|.... .|.-.|.|+
T Consensus 59 p~n~~Q~~~l~al~----~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~----ge~LGfLPG---- 125 (262)
T PRK10536 59 ARNEAQAHYLKAIE----SKQLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQA----DEDLGFLPG---- 125 (262)
T ss_pred CCCHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCc----hhhhCcCCC----
Confidence 35567888777665 345678889999999999999988765433 24355555454322 233344442
Q ss_pred EecCChhHHHH-----HH------------HHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHH
Q 004103 135 VYDGRPDERKA-----MR------------EEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECAL 197 (773)
Q Consensus 135 ~~~g~~~~r~~-----~~------------~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~ 197 (773)
+..+.-. +. ..... ...-.|-|.+...+.-. .+.-.+||||||+++.- ...
T Consensus 126 ----~~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~-~~~~~Iei~~l~ymRGr-----tl~~~~vIvDEaqn~~~--~~~ 193 (262)
T PRK10536 126 ----DIAEKFAPYFRPVYDVLVRRLGASFMQYCLR-PEIGKVEIAPFAYMRGR-----TFENAVVILDEAQNVTA--AQM 193 (262)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-hccCcEEEecHHHhcCC-----cccCCEEEEechhcCCH--HHH
Confidence 1111100 00 00000 01123444444443221 12347999999999853 455
Q ss_pred HHHHHccccceEEEecCCCCCCCH
Q 004103 198 AKTISGYQIQRRLLLTGTPIQNSL 221 (773)
Q Consensus 198 ~~~l~~~~~~~rllLTgTP~~n~~ 221 (773)
...+.++....+++++|-|-|.++
T Consensus 194 k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 194 KMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred HHHHhhcCCCCEEEEeCChhhccC
Confidence 556688899999999999977664
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.46 E-value=0.00094 Score=75.73 Aligned_cols=73 Identities=19% Similarity=0.330 Sum_probs=60.0
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~ 132 (773)
.+|-.-|..||...+ ++.=.||..++|+|||++..+++.++.+. ..+|+||++|. ..++|-.+.+.+-. ++
T Consensus 409 pkLN~SQ~~AV~~VL----~rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~tg--LK 480 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKTG--LK 480 (935)
T ss_pred hhhchHHHHHHHHHH----cCCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhcC--ce
Confidence 489999999999988 45557999999999999998888888876 46899999998 55677888787643 55
Q ss_pred EE
Q 004103 133 AV 134 (773)
Q Consensus 133 v~ 134 (773)
|+
T Consensus 481 Vv 482 (935)
T KOG1802|consen 481 VV 482 (935)
T ss_pred Ee
Confidence 54
No 183
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.28 E-value=0.00093 Score=75.56 Aligned_cols=152 Identities=19% Similarity=0.314 Sum_probs=93.4
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHH-------
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFS------- 125 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~------- 125 (773)
..|-+-|..++.+++. +..-.++-.++|+|||.+..-+|..+...+ ..+||++|+ ..++|-.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl~~~~~~l~ 257 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERLTHLKLNLV 257 (649)
T ss_pred ccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHhcccccchh
Confidence 4788899999998874 223357788999999999999998888764 589999999 55677766432
Q ss_pred ------hhcCC-----ceEEEecCC------------------------hhHHHH-------HHHHHH--------hhcC
Q 004103 126 ------TWAPS-----IAAVVYDGR------------------------PDERKA-------MREEFF--------SERG 155 (773)
Q Consensus 126 ------k~~p~-----~~v~~~~g~------------------------~~~r~~-------~~~~~~--------~~~~ 155 (773)
+..+. +..+.-.+. ...+.. ++..+. ....
T Consensus 258 R~g~paRl~~~~~~~sld~~~~t~d~~~~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~eii~ 337 (649)
T KOG1803|consen 258 RVGHPARLLESVADHSLDLLSNTKDNSQNAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVKEIIS 337 (649)
T ss_pred hcCchhhhhhhhhhhHHHHHHhcCchhhhhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11110 011111110 001111 111111 1124
Q ss_pred CccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccceEEEecCCCCC
Q 004103 156 RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 218 (773)
Q Consensus 156 ~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllLTgTP~~ 218 (773)
...|+++|-..... ..+.+..|+++|||||-..-.+.+... + -...+++|.|-|.|
T Consensus 338 n~~VVfaTl~ga~~--~~~~~~~fD~vIIDEaaQamE~~cWip--v---lk~kk~ILaGDp~Q 393 (649)
T KOG1803|consen 338 NSRVVFATLGGALD--RLLRKRTFDLVIIDEAAQAMEPQCWIP--V---LKGKKFILAGDPKQ 393 (649)
T ss_pred ccceEEEeccchhh--hhhcccCCCEEEEehhhhhccchhhhH--H---hcCCceEEeCCccc
Confidence 56677777655444 556667899999999976654444322 2 22348999999875
No 184
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.26 E-value=0.0043 Score=73.66 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=53.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFST 126 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k 126 (773)
..|-+.|..+|..++. +....++-.++|+|||.++++++..+...+ .++||++|+ ..+.+..+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g---~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRG---LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEEcCcHHHHHHHHHHHHh
Confidence 5789999999988763 335578889999999999999888887643 289999998 556677777765
No 185
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.22 E-value=0.00099 Score=65.46 Aligned_cols=98 Identities=21% Similarity=0.247 Sum_probs=65.9
Q ss_pred hhcCCcEEEEeecHHHHHHHHHHHHhCC----CeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc--cccccCCcc
Q 004103 378 RKSGHRVLLFSQMTRLMDILEIYLKLND----FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR--AGGLGLNLQ 451 (773)
Q Consensus 378 ~~~g~kvLIFsq~~~~ld~L~~~L~~~g----~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~--agg~GLNL~ 451 (773)
...+.++|||+.+-..++.+.+.+...+ +.+. .. ...++..+++.|..+... +|+++. ...+|||++
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q---~~~~~~~~l~~~~~~~~~---il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQ---GSKSRDELLEEFKRGEGA---ILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-ES---TCCHHHHHHHHHCCSSSE---EEEEETTSCCGSSS--E
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ec---CcchHHHHHHHHHhccCe---EEEEEecccEEEeecCC
Confidence 3456799999999999999999998653 3332 22 245788999999986543 677777 899999999
Q ss_pred c--CCeeEEeCCCC-Chh-----------------------------hHHHHhhhhhhcCCcC
Q 004103 452 T--ADTVIIFDSDW-NPQ-----------------------------MDQQAEDRAHRIGQKK 482 (773)
Q Consensus 452 ~--ad~VI~~D~~w-Np~-----------------------------~~~Qa~gRa~RiGQ~k 482 (773)
+ +..||+.-.|+ +|. ...|++||+.|-.+..
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~ 141 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDY 141 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-E
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCc
Confidence 6 78999998886 332 3459999999965543
No 186
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.17 E-value=0.004 Score=63.60 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=74.5
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCC--
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPS-- 130 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~-- 130 (773)
+.-+||-|.+.+..|++. ..+.|.++-.-||-|||-+.+-+++.++..+. .=+-+|||+.++.+-..-+..-+.+
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVpk~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVPKALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHHHHHHHHHHHh
Confidence 457999999999999863 45677899999999999998888877776432 3456889999999987777654422
Q ss_pred -ceEEEe--cC----ChhHHHHHHHHHHhhcCCccEEEcCHHHHHH
Q 004103 131 -IAAVVY--DG----RPDERKAMREEFFSERGRFNVLITHYDLIMR 169 (773)
Q Consensus 131 -~~v~~~--~g----~~~~r~~~~~~~~~~~~~~~VvItTye~l~~ 169 (773)
-.+..+ +- +...-..+..........-.|++++++.+..
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 222222 11 1111122222221111334599999988754
No 187
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.16 E-value=0.0051 Score=62.08 Aligned_cols=123 Identities=22% Similarity=0.187 Sum_probs=65.9
Q ss_pred CchHHHHHHHHHHHHhhcCCCC-eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcch-HHHHHHHHhhcCCce
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLN-GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL-PNWINEFSTWAPSIA 132 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~-gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll-~qW~~E~~k~~p~~~ 132 (773)
+|.+-|.+++..++. ++.+ .+|....|+|||...-.+...+... ..++++++|+.-. .+-..... ..
T Consensus 1 ~L~~~Q~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~apT~~Aa~~L~~~~~-----~~ 69 (196)
T PF13604_consen 1 TLNEEQREAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAPTNKAAKELREKTG-----IE 69 (196)
T ss_dssp -S-HHHHHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEESSHHHHHHHHHHHT-----S-
T ss_pred CCCHHHHHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECCcHHHHHHHHHhhC-----cc
Confidence 478899999999875 3333 5778899999998765554444442 2588999998443 33322211 11
Q ss_pred EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHH------hhcCeeEEEEccccccCChhhHHHHHHHccc-
Q 004103 133 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL------KKVQWIYMIVDEGHRLKNHECALAKTISGYQ- 205 (773)
Q Consensus 133 v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l------~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~- 205 (773)
. .|...+....... .....++||||||-.+.. ..+...+....
T Consensus 70 a----------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~--~~~~~ll~~~~~ 119 (196)
T PF13604_consen 70 A----------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS--RQLARLLRLAKK 119 (196)
T ss_dssp E----------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH--HHHHHHHHHS-T
T ss_pred h----------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccCH--HHHHHHHHHHHh
Confidence 1 1111110000000 022457999999998843 23444444443
Q ss_pred cceEEEecCCCCC
Q 004103 206 IQRRLLLTGTPIQ 218 (773)
Q Consensus 206 ~~~rllLTgTP~~ 218 (773)
...+++|.|-|-|
T Consensus 120 ~~~klilvGD~~Q 132 (196)
T PF13604_consen 120 SGAKLILVGDPNQ 132 (196)
T ss_dssp -T-EEEEEE-TTS
T ss_pred cCCEEEEECCcch
Confidence 3678999999865
No 188
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.15 E-value=0.0013 Score=61.35 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=59.1
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcC--CCCCE-EEEeCCcc-hHHHHHHHHhhcCCceEEEecCChhHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKG--VTGPH-VIVAPKAV-LPNWINEFSTWAPSIAAVVYDGRPDERKAMREE 149 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~--~~gp~-LIVvP~sl-l~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~ 149 (773)
+..+++..+.|+|||..+-.++..+..... ...++ .+-+|... ...+..++...+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~----------------- 66 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL----------------- 66 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS-----------------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc-----------------
Confidence 445688899999999888777766654210 01122 33334322 3444444433221000
Q ss_pred HHhhcCCccEEEcCHHHH-HHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc--ccceEEEecCCC
Q 004103 150 FFSERGRFNVLITHYDLI-MRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY--QIQRRLLLTGTP 216 (773)
Q Consensus 150 ~~~~~~~~~VvItTye~l-~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~--~~~~rllLTgTP 216 (773)
.. -.+...+ ..-...+....-.+|||||+|++. .......+..+ .....++|+|||
T Consensus 67 -----~~----~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 67 -----KS----RQTSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp -----SS----TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred -----cc----cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 00 0111111 112233444445799999999983 24444444444 677789999998
No 189
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.13 E-value=0.0022 Score=67.44 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=70.5
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchH----HHHHHHHhhc
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP----NWINEFSTWA 128 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~----qW~~E~~k~~ 128 (773)
|..|++-|+-|+-.|. .|-|.-..||=|||+++..++ ++..-. ..++=||+.+..+. +|...|-+++
T Consensus 75 g~~p~~vQll~~l~L~------~G~laEm~TGEGKTli~~l~a-~~~AL~--G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH------KGRLAEMKTGEGKTLIAALPA-ALNALQ--GKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHHH------TTSEEEESTTSHHHHHHHHHH-HHHHTT--SS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhcc------cceeEEecCCCCcHHHHHHHH-HHHHHh--cCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 5678888888875442 233788999999999985443 333322 23677778875553 3888887877
Q ss_pred CCceEEEecC-Ch-hHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH--H-------HhhcCeeEEEEcccccc
Q 004103 129 PSIAAVVYDG-RP-DERKAMREEFFSERGRFNVLITHYDLIMRDRQ--Y-------LKKVQWIYMIVDEGHRL 190 (773)
Q Consensus 129 p~~~v~~~~g-~~-~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~--~-------l~~~~~~~vIiDEaH~l 190 (773)
++.+-...+ .+ ..|... -..+|+-+|-..+.-|.- . .....++++||||++.+
T Consensus 146 -Glsv~~~~~~~~~~~r~~~--------Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 146 -GLSVGIITSDMSSEERREA--------YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp -T--EEEEETTTEHHHHHHH--------HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred -hhccccCccccCHHHHHHH--------HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 455544443 33 222222 235698888777765421 1 11247889999999876
No 190
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.09 E-value=0.0016 Score=72.10 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=53.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHH-HHHHHHhhc-CCceEEEecCChhHHHHHHHHHHhhcC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN-WINEFSTWA-PSIAAVVYDGRPDERKAMREEFFSERG 155 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~q-W~~E~~k~~-p~~~v~~~~g~~~~r~~~~~~~~~~~~ 155 (773)
|+--..|+|||+.++.++..+... ......+++|+...+.+ -...+..-. + .
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~-~~~~~~~~l~~n~~l~~~l~~~l~~~~~~-------------------------~ 58 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNS-EEGKKVLYLCGNHPLRNKLREQLAKKYNP-------------------------K 58 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhcc-ccCCceEEEEecchHHHHHHHHHhhhccc-------------------------c
Confidence 567789999999999999888222 22346688888755555 344443322 1 1
Q ss_pred CccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCC
Q 004103 156 RFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKN 192 (773)
Q Consensus 156 ~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn 192 (773)
.....+..+..+..... ......+++|||||||++..
T Consensus 59 ~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 11122333333332221 22334789999999999976
No 191
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.94 E-value=0.004 Score=73.23 Aligned_cols=89 Identities=21% Similarity=0.314 Sum_probs=57.3
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCC-------CeEEEEcCCCCHHHHHHHHHhhcC----CCCC-cEEEEEecccccccC
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLND-------FKFLRLDGSTKTEERGTLLKQFNA----PDSP-YFMFLLSTRAGGLGL 448 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g-------~~~~~i~G~~~~~eR~~~i~~Fn~----~~~~-~~v~LlSt~agg~GL 448 (773)
.+.+|||..+-.+++.+..+...++ .+-+.+ .-.+..+=.+++.+|.+ ++.. .-.+.|+-...++||
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 4569999999999999977776532 222222 22233344555666643 2221 223567777899999
Q ss_pred Cccc--CCeeEEeCCCCChhhHHH
Q 004103 449 NLQT--ADTVIIFDSDWNPQMDQQ 470 (773)
Q Consensus 449 NL~~--ad~VI~~D~~wNp~~~~Q 470 (773)
|+.+ +..||+...|+=|..+.|
T Consensus 640 DFsD~~~RaVI~tGlPyP~~~D~~ 663 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPYPPVMDPR 663 (945)
T ss_pred CccccCCceeEEecCCCCCCCCHH
Confidence 9986 688999998887665543
No 192
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.63 E-value=0.025 Score=52.68 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=25.3
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 115 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~s 115 (773)
+...++..++|+|||..+-.++..+.. ...+++++....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~ 57 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASD 57 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhh
Confidence 455688999999999877666665542 123555554433
No 193
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.61 E-value=0.01 Score=69.60 Aligned_cols=139 Identities=15% Similarity=0.160 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--CCCEEEEeCCcch-HHHHHHHHhhcCCceEE
Q 004103 58 AYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV--TGPHVIVAPKAVL-PNWINEFSTWAPSIAAV 134 (773)
Q Consensus 58 pyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~--~gp~LIVvP~sll-~qW~~E~~k~~p~~~v~ 134 (773)
+.|..++..++. +.-.+|....|+|||.+...++..+...... ...+++++|+.-. ....+-+......+..
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 789988887773 5567999999999999988888777654322 2368889998433 3344433332211110
Q ss_pred EecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH----H----HhhcCeeEEEEccccccCChhhHHHHHHHcccc
Q 004103 135 VYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ----Y----LKKVQWIYMIVDEGHRLKNHECALAKTISGYQI 206 (773)
Q Consensus 135 ~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~----~----l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~ 206 (773)
..... ....+-..|...+..... + -....+++||||||-.+-. ..+...+..++.
T Consensus 223 ----~~~~~-----------~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~--~l~~~ll~al~~ 285 (586)
T TIGR01447 223 ----AEALI-----------AALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL--PLMAKLLKALPP 285 (586)
T ss_pred ----chhhh-----------hccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH--HHHHHHHHhcCC
Confidence 00000 000011222222221100 0 1123689999999998843 345556677888
Q ss_pred ceEEEecCCCCC
Q 004103 207 QRRLLLTGTPIQ 218 (773)
Q Consensus 207 ~~rllLTgTP~~ 218 (773)
..+++|.|-|-|
T Consensus 286 ~~rlIlvGD~~Q 297 (586)
T TIGR01447 286 NTKLILLGDKNQ 297 (586)
T ss_pred CCEEEEECChhh
Confidence 889999998754
No 194
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.57 E-value=0.01 Score=65.88 Aligned_cols=67 Identities=15% Similarity=0.074 Sum_probs=48.1
Q ss_pred CCCCcCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 004103 47 QPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 113 (773)
Q Consensus 47 ~P~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP 113 (773)
.|..++-...+|-|.+=..-+......+++|+|-.+.|+|||+.-++++..+....+....-||-|.
T Consensus 8 l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCS 74 (755)
T KOG1131|consen 8 LLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCS 74 (755)
T ss_pred eeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEec
Confidence 3444444578899987766666678889999999999999999999887555544443333455554
No 195
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.48 E-value=0.18 Score=61.23 Aligned_cols=67 Identities=18% Similarity=0.108 Sum_probs=46.8
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCC-cchHHHHHHHHhh
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~-~~gp~LIVvP~-sll~qW~~E~~k~ 127 (773)
.|.|-|.++|.+ ..+..++-...|+|||.+.+.-+++|+...+ ....+|+|+-+ .......+.+.+.
T Consensus 9 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 9 SLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred hcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 588999999852 2345566777999999999999999997543 33468888876 4444444444443
No 196
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.36 E-value=0.0094 Score=73.83 Aligned_cols=180 Identities=27% Similarity=0.355 Sum_probs=96.5
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCC--HHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCc
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLG--KTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSI 131 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlG--KTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~ 131 (773)
..+.++|.....-...... ....+++..|+| ||+.+..+....... +.....++++|..+..+|..+...++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (866)
T COG0553 83 FILIPHQLDIALEVLNELA--LRVLIADEVGLGDLKTIEAGAILKELLLR-GEIKRVLILVPKTLRAQWVVELLEKFNIR 159 (866)
T ss_pred cccCcchhhhhhhhhhhhh--hchhhcccccccccccccccccchHhhhh-hhhccceeccchHHHHHHHHHhhhhcccc
Confidence 3566777766544333222 226889999999 899887666655544 34457899999988899998887663211
Q ss_pred eEEEe-cCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHh----HHHHhhcCe---eEEEEccccccCChh---------
Q 004103 132 AAVVY-DGRPDERKAMREEFFSERGRFNVLITHYDLIMRD----RQYLKKVQW---IYMIVDEGHRLKNHE--------- 194 (773)
Q Consensus 132 ~v~~~-~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~----~~~l~~~~~---~~vIiDEaH~lkn~~--------- 194 (773)
..... .+.......... .........++...+..... ...+....| +++++||+|.+....
T Consensus 160 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (866)
T COG0553 160 LAVLDKEGLRYLLKQYDA--YNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLE 237 (866)
T ss_pred chhhhhhhhhhhhhhhcc--cccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccchh
Confidence 11111 111110000000 00000000023333333322 122334456 799999999987631
Q ss_pred hHHHHHHHcc--cc------ceEEEecCCCCCCCHHHHHHhhccccCCCCCC
Q 004103 195 CALAKTISGY--QI------QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNS 238 (773)
Q Consensus 195 s~~~~~l~~~--~~------~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~ 238 (773)
......+... .. ....++++||......+++...+++.+..+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 238 TLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred hhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 2222222222 11 12347899999888877776566665554444
No 197
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.33 E-value=0.22 Score=57.61 Aligned_cols=79 Identities=10% Similarity=0.125 Sum_probs=50.5
Q ss_pred CcEEEEeecHHHHHHHHHHHHhCCC-------eEEEEcCCCCHHHHHHHHHhhcC----CCCCcEEEEEecccccccCCc
Q 004103 382 HRVLLFSQMTRLMDILEIYLKLNDF-------KFLRLDGSTKTEERGTLLKQFNA----PDSPYFMFLLSTRAGGLGLNL 450 (773)
Q Consensus 382 ~kvLIFsq~~~~ld~L~~~L~~~g~-------~~~~i~G~~~~~eR~~~i~~Fn~----~~~~~~v~LlSt~agg~GLNL 450 (773)
.-|++|..+-+.+..+..++...|+ +-+.+....+ -..+++.|.. |. ....|-+--.-.++|||+
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~-GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGR-GAILLAVVGGKLSEGINF 705 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCC-CeEEEEEecccccccccc
Confidence 4799999999999999998887665 2222222222 2445666642 22 222233334456799999
Q ss_pred cc--CCeeEEeCCCCC
Q 004103 451 QT--ADTVIIFDSDWN 464 (773)
Q Consensus 451 ~~--ad~VI~~D~~wN 464 (773)
.+ +..||....|+-
T Consensus 706 ~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYP 721 (821)
T ss_pred ccccccEEEEeecCCC
Confidence 97 889999888873
No 198
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.28 E-value=0.028 Score=67.94 Aligned_cols=134 Identities=22% Similarity=0.222 Sum_probs=80.7
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCce
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~ 132 (773)
+..|.+-|.+++..+. .+.-.+|....|+|||.++-+++..+... +...++++++|+........+.. +..
T Consensus 321 ~~~l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l~~i~~~~~~~-~~~~~v~l~ApTg~AA~~L~e~~----g~~ 391 (720)
T TIGR01448 321 RKGLSEEQKQALDTAI----QHKVVILTGGPGTGKTTITRAIIELAEEL-GGLLPVGLAAPTGRAAKRLGEVT----GLT 391 (720)
T ss_pred CCCCCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCceEEEEeCchHHHHHHHHhc----CCc
Confidence 4579999999998876 34567999999999998876666655443 22247888899876665444321 100
Q ss_pred EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccceEEEe
Q 004103 133 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLL 212 (773)
Q Consensus 133 v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllL 212 (773)
. ..+.. ++...... . .. .... .....++||||||+.+-. ..+...+..++...+++|
T Consensus 392 a----------~Tih~-lL~~~~~~--~---~~---~~~~--~~~~~~llIvDEaSMvd~--~~~~~Ll~~~~~~~rlil 448 (720)
T TIGR01448 392 A----------STIHR-LLGYGPDT--F---RH---NHLE--DPIDCDLLIVDESSMMDT--WLALSLLAALPDHARLLL 448 (720)
T ss_pred c----------ccHHH-HhhccCCc--c---ch---hhhh--ccccCCEEEEeccccCCH--HHHHHHHHhCCCCCEEEE
Confidence 0 00000 11000000 0 00 0000 124578999999999843 234555577777889999
Q ss_pred cCCCCC
Q 004103 213 TGTPIQ 218 (773)
Q Consensus 213 TgTP~~ 218 (773)
-|=|-|
T Consensus 449 vGD~~Q 454 (720)
T TIGR01448 449 VGDTDQ 454 (720)
T ss_pred ECcccc
Confidence 998754
No 199
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.13 E-value=0.023 Score=60.03 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=21.5
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~ 101 (773)
.+.+|..++|+|||..|-+++..+...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 345899999999999998887766543
No 200
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.10 E-value=0.026 Score=66.58 Aligned_cols=141 Identities=15% Similarity=0.162 Sum_probs=81.4
Q ss_pred chHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCCcchHH-HHHHHHhhcCCceE
Q 004103 56 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKAVLPN-WINEFSTWAPSIAA 133 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~-~~gp~LIVvP~sll~q-W~~E~~k~~p~~~v 133 (773)
.-+.|..++.-.+ ...-.+|..++|+|||.+...++..+..... ....+++++|+.-... -.+.+..-...+..
T Consensus 153 ~~d~Qk~Av~~a~----~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHh----cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 3589999997666 3556799999999999998888877765422 2236788899854433 33333221111110
Q ss_pred EEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhH--------HHHhhcCeeEEEEccccccCChhhHHHHHHHccc
Q 004103 134 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--------QYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 205 (773)
Q Consensus 134 ~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~--------~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~ 205 (773)
....+. ....-..|...+.... ..-....+++|||||+..+- .......+..++
T Consensus 229 -----~~~~~~-----------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd--~~lm~~ll~al~ 290 (615)
T PRK10875 229 -----TDEQKK-----------RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD--LPMMARLIDALP 290 (615)
T ss_pred -----chhhhh-----------cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc--HHHHHHHHHhcc
Confidence 000000 0001112222221110 00122357899999999883 334455667888
Q ss_pred cceEEEecCCCCC
Q 004103 206 IQRRLLLTGTPIQ 218 (773)
Q Consensus 206 ~~~rllLTgTP~~ 218 (773)
...||+|-|-|-|
T Consensus 291 ~~~rlIlvGD~~Q 303 (615)
T PRK10875 291 PHARVIFLGDRDQ 303 (615)
T ss_pred cCCEEEEecchhh
Confidence 8899999998754
No 201
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.04 Score=62.56 Aligned_cols=42 Identities=19% Similarity=0.096 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 60 QLEGLQWMLSLFNNNL--N-GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~--~-gILademGlGKTi~aiali~~l~~~ 101 (773)
|...+..+.....++. + -|+..+.|+|||..|..++..+...
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4444444444333433 2 3889999999999998888776543
No 202
>PRK04296 thymidine kinase; Provisional
Probab=96.00 E-value=0.027 Score=56.56 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=25.3
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 113 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP 113 (773)
.++..+||+|||..++.++..+... ..+++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 3678899999999988888776553 236677755
No 203
>PRK06526 transposase; Provisional
Probab=95.95 E-value=0.026 Score=59.30 Aligned_cols=29 Identities=24% Similarity=0.169 Sum_probs=25.0
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~~ 101 (773)
.+.+.+|..++|+|||..+.++...+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 57778999999999999999998877654
No 204
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.95 E-value=0.033 Score=51.31 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=29.5
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 120 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW 120 (773)
...+|..++|+|||..+..++..+.... ..++++.+......+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~ 45 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEV 45 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccC
Confidence 4568899999999998877776554432 256777776554443
No 205
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.84 E-value=0.71 Score=56.28 Aligned_cols=54 Identities=20% Similarity=0.120 Sum_probs=40.9
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCC
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPK 114 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~-~~gp~LIVvP~ 114 (773)
.|.|-|.++|.+ ..+..++-...|+|||.+.+.-+++++...+ .+..+|+|+-+
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 4 HLNPEQREAVKT------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred ccCHHHHHHHhC------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 588999999862 2344567778999999999999999997643 33457777765
No 206
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.13 Score=57.33 Aligned_cols=128 Identities=14% Similarity=0.129 Sum_probs=71.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCCc--chHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKA--VLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSE 153 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~-~~gp~LIVvP~s--ll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~ 153 (773)
.++..++|.|||.++.-++.++..... ...++.+|+=.. .-..|+ +..|+....+-+
T Consensus 177 i~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv------------------ 236 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV------------------ 236 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcce------------------
Confidence 467899999999998877777665422 223444444322 112222 444442111111
Q ss_pred cCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhh---HHHHHHHccc--cceEEEecCCCCCCCHHHHHHhh
Q 004103 154 RGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC---ALAKTISGYQ--IQRRLLLTGTPIQNSLQELWSLL 228 (773)
Q Consensus 154 ~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s---~~~~~l~~~~--~~~rllLTgTP~~n~~~el~~lL 228 (773)
.++.+++.+......+ .+.++||||++.+...... .+...+.... ....|.|+||--++.+.+++.-+
T Consensus 237 -----~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 237 -----KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred -----EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 2223344443333333 3579999999999854322 3333343332 25668999998888888777666
Q ss_pred ccc
Q 004103 229 NFL 231 (773)
Q Consensus 229 ~~L 231 (773)
..+
T Consensus 310 ~~~ 312 (388)
T PRK12723 310 SPF 312 (388)
T ss_pred cCC
Confidence 544
No 207
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.66 E-value=0.096 Score=57.74 Aligned_cols=144 Identities=17% Similarity=0.299 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhhcCCCC---eEEecCCCCCHHHHHHHHHHHHHHhcCC-CCCEEEEeCCcchHHHHHHHHhhcCCceEEE
Q 004103 60 QLEGLQWMLSLFNNNLN---GILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPKAVLPNWINEFSTWAPSIAAVV 135 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~~---gILademGlGKTi~aiali~~l~~~~~~-~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~ 135 (773)
|.+++..+...+..+.. -++..+.|+|||..+..++..+...... ..|.-+..|-.....+..-...-.|++..+.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~ 107 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHIT 107 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEee
Confidence 44556677666655542 4779999999999999999888763211 1122222232222233222222235544332
Q ss_pred ecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhh----cCeeEEEEccccccCCh-hhHHHHHHHccccc-eE
Q 004103 136 YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKK----VQWIYMIVDEGHRLKNH-ECALAKTISGYQIQ-RR 209 (773)
Q Consensus 136 ~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~----~~~~~vIiDEaH~lkn~-~s~~~~~l~~~~~~-~r 209 (773)
....... +++. -.++.+.+..-..++.. -.|.+|||||+|.|... ...+.+.+...+.. ..
T Consensus 108 ~~~~~~~------------~~~~-~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 108 RPFDEKT------------GKFK-TAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred ccccccc------------cccc-ccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 1100000 0000 01223333333333332 37899999999999421 12344555444333 33
Q ss_pred EEecCCC
Q 004103 210 LLLTGTP 216 (773)
Q Consensus 210 llLTgTP 216 (773)
+++|..|
T Consensus 175 iLit~~~ 181 (351)
T PRK09112 175 ILISHSS 181 (351)
T ss_pred EEEECCh
Confidence 5555444
No 208
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.47 E-value=0.081 Score=62.82 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=31.2
Q ss_pred cCeeEEEEccccccCChh-hHHHHHHHccccceEEEecCCCCCCCHHHH
Q 004103 177 VQWIYMIVDEGHRLKNHE-CALAKTISGYQIQRRLLLTGTPIQNSLQEL 224 (773)
Q Consensus 177 ~~~~~vIiDEaH~lkn~~-s~~~~~l~~~~~~~rllLTgTP~~n~~~el 224 (773)
-+|.++||||+|+|.+.. ..+.+.|.......+++|+.|-.+.-+.-|
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchh
Confidence 368999999999996532 345555555566677888877544333333
No 209
>PRK08181 transposase; Validated
Probab=95.44 E-value=0.13 Score=54.59 Aligned_cols=47 Identities=23% Similarity=0.121 Sum_probs=35.3
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~ 101 (773)
.+..-|..++..+-....++.+.+|..++|+|||..+.++...+...
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 35567777775443334467788999999999999999988877664
No 210
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.43 E-value=0.073 Score=64.34 Aligned_cols=42 Identities=29% Similarity=0.260 Sum_probs=27.4
Q ss_pred cCeeEEEEccccccCC-hhhHHHHHHHccccceEEEecCCCCC
Q 004103 177 VQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGTPIQ 218 (773)
Q Consensus 177 ~~~~~vIiDEaH~lkn-~~s~~~~~l~~~~~~~rllLTgTP~~ 218 (773)
-+|.++||||+|+|.. ....+.+.|...+...+++|..|-..
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCch
Confidence 4689999999999943 22344455555556667777655433
No 211
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.41 E-value=0.14 Score=62.38 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=21.6
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
-|+..+.|+|||..+..++..|...
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 3789999999999999998888754
No 212
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.33 E-value=0.016 Score=65.61 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=58.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHh-----hcCCceEEEecCChhHHHHHHHHHHhhc
Q 004103 81 DEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFST-----WAPSIAAVVYDGRPDERKAMREEFFSER 154 (773)
Q Consensus 81 demGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k-----~~p~~~v~~~~g~~~~r~~~~~~~~~~~ 154 (773)
..||+|||+++.++|.++...+ ...+|..|-. +++..-...|.. +.- -.++.+.+..-..+.+ ..+....
T Consensus 4 matgsgkt~~ma~lil~~y~kg--yr~flffvnq~nilekt~~nftd~~s~kylf-~e~i~~~d~~i~ikkv-n~fsehn 79 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKG--YRNFLFFVNQANILEKTKLNFTDSVSSKYLF-SENININDENIEIKKV-NNFSEHN 79 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhc--hhhEEEEecchhHHHHHHhhcccchhhhHhh-hhhhhcCCceeeeeee-cccCccC
Confidence 4699999999999999998853 3466766654 666554433321 110 0011111111111100 0011122
Q ss_pred CCccEEEcCHHHHHHhHHH----------HhhcCeeEEEEcccccc
Q 004103 155 GRFNVLITHYDLIMRDRQY----------LKKVQWIYMIVDEGHRL 190 (773)
Q Consensus 155 ~~~~VvItTye~l~~~~~~----------l~~~~~~~vIiDEaH~l 190 (773)
....|+.||.+.+..+.-. |... =-+++-||||++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~-klvfl~deahhl 124 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQ-KLVFLADEAHHL 124 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhC-ceEEEechhhhh
Confidence 5677999999988776322 2222 125677999999
No 213
>PLN03025 replication factor C subunit; Provisional
Probab=95.22 E-value=0.15 Score=55.65 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=30.9
Q ss_pred CeeEEEEccccccCCh-hhHHHHHHHccccceEEEecCCCCCCCHHHHHH
Q 004103 178 QWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 226 (773)
Q Consensus 178 ~~~~vIiDEaH~lkn~-~s~~~~~l~~~~~~~rllLTgTP~~n~~~el~~ 226 (773)
.+.+|||||+|.+... ...+.+.+..+....+++|++++...-+..|.+
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 5889999999999532 233444455555566788877765443344433
No 214
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.20 E-value=0.079 Score=57.16 Aligned_cols=155 Identities=20% Similarity=0.289 Sum_probs=79.9
Q ss_pred CCCCcCCCCchH-HHHHHHHHHHHhhcCCCC-eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchH------
Q 004103 47 QPTLLQGGELRA-YQLEGLQWMLSLFNNNLN-GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP------ 118 (773)
Q Consensus 47 ~P~~l~~~~Lrp-yQ~~gv~~l~~~~~~~~~-gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~------ 118 (773)
.+....|..+|. +|.-++..++. .... ..|...-|+|||+.|+|+..+.....+...+++|--|..-+.
T Consensus 219 ~~~~vwGi~prn~eQ~~ALdlLld---~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfL 295 (436)
T COG1875 219 EDQEVWGIRPRNAEQRVALDLLLD---DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFL 295 (436)
T ss_pred CchhhhccCcccHHHHHHHHHhcC---CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcC
Confidence 344445555544 77777776653 2222 356788999999999988777666666666766666654332
Q ss_pred ---------HHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccc
Q 004103 119 ---------NWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHR 189 (773)
Q Consensus 119 ---------qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~ 189 (773)
.|..-+-. ++.++.-..... .......... +...|--.||=.= +.+.=.+||||||++
T Consensus 296 PG~eEeKm~PWmq~i~D---nLE~L~~~~~~~--~~~l~~~l~~-~~iev~alt~IRG-------RSl~~~FiIIDEaQN 362 (436)
T COG1875 296 PGTEEEKMGPWMQAIFD---NLEVLFSPNEPG--DRALEEILSR-GRIEVEALTYIRG-------RSLPDSFIIIDEAQN 362 (436)
T ss_pred CCchhhhccchHHHHHh---HHHHHhcccccc--hHHHHHHHhc-cceeeeeeeeecc-------cccccceEEEehhhc
Confidence 12221111 000000000000 0000000000 2222222222110 112345899999999
Q ss_pred cCChhhHHHHHHHccccceEEEecCCCCCC
Q 004103 190 LKNHECALAKTISGYQIQRRLLLTGTPIQN 219 (773)
Q Consensus 190 lkn~~s~~~~~l~~~~~~~rllLTgTP~~n 219 (773)
+.- ..+--.+.+.-..-++.|||-|-|-
T Consensus 363 LTp--heikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 363 LTP--HELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred cCH--HHHHHHHHhccCCCEEEEcCCHHHc
Confidence 843 2333445677778899999988654
No 215
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.07 E-value=0.28 Score=53.60 Aligned_cols=48 Identities=25% Similarity=0.227 Sum_probs=35.0
Q ss_pred CCchHHHHHHHHHHHHh---h-cCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 54 GELRAYQLEGLQWMLSL---F-NNNLNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~---~-~~~~~gILademGlGKTi~aiali~~l~~~ 101 (773)
+.++.++..++..+... + ..+.+.+|..++|+|||..+.+++..+...
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 46777777777644432 2 234566888999999999999999888764
No 216
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.04 E-value=0.13 Score=60.34 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHH
Q 004103 78 ILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~ 100 (773)
|+..+.|+|||..+..++..+..
T Consensus 42 LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 42 LFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 78999999999999988888765
No 217
>CHL00181 cbbX CbbX; Provisional
Probab=95.01 E-value=0.075 Score=56.96 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=22.0
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~ 101 (773)
.+.+|..++|+|||..|-+++..+...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 345889999999999998888776654
No 218
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.91 E-value=0.15 Score=59.90 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHH
Q 004103 78 ILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~ 100 (773)
|+..+.|+|||..|.+++..+..
T Consensus 41 LF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 41 LFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred EEECCCCCCHHHHHHHHHHHhCC
Confidence 88999999999999888877754
No 219
>PF13245 AAA_19: Part of AAA domain
Probab=94.89 E-value=0.094 Score=44.27 Aligned_cols=50 Identities=22% Similarity=0.177 Sum_probs=36.0
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHh-cCCCCCEEEEeCCc-chHHHHHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLEN-KGVTGPHVIVAPKA-VLPNWINEF 124 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~-~~~~gp~LIVvP~s-ll~qW~~E~ 124 (773)
.-.++..+.|+|||.+++..+.++... .....++||++|+. .+.+-.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 335668999999999999999998853 12255899999984 444444444
No 220
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.82 E-value=0.081 Score=56.67 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=21.9
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~ 101 (773)
.+.++..++|+|||..|.+++..+...
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~ 85 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRL 85 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 356788999999999998887777654
No 221
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.82 E-value=0.2 Score=50.48 Aligned_cols=130 Identities=18% Similarity=0.232 Sum_probs=68.7
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEEec--CChhHHHHHHHHHHhhcC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYD--GRPDERKAMREEFFSERG 155 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~~~--g~~~~r~~~~~~~~~~~~ 155 (773)
++.-++|.|||.++.-+++++... ..++.+|+--.--.-=.++++.|+..+.+-++. ...+..
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~------------ 69 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA------------ 69 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH------------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH------------
Confidence 578899999999998888888775 334555543322222334444444222222221 111111
Q ss_pred CccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhh---HHHHHHHcc-ccceEEEecCCCCCCCHHHHHHhhccc
Q 004103 156 RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC---ALAKTISGY-QIQRRLLLTGTPIQNSLQELWSLLNFL 231 (773)
Q Consensus 156 ~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s---~~~~~l~~~-~~~~rllLTgTP~~n~~~el~~lL~~L 231 (773)
+.+......+..-++++|+||=+.+..+... .+.+.+... .....|.|++|--+..+..+......+
T Consensus 70 ---------~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 70 ---------EIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp ---------HHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred ---------HHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc
Confidence 1111222334455689999999877644322 233333333 456678889987666655554444433
No 222
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.76 E-value=0.15 Score=48.64 Aligned_cols=54 Identities=24% Similarity=0.328 Sum_probs=38.0
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCccc--CCeeEEeCCCC
Q 004103 407 KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT--ADTVIIFDSDW 463 (773)
Q Consensus 407 ~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~--ad~VI~~D~~w 463 (773)
..+.+.| ....+...+++.|...... .+|+++....+|||++. +..||+.-.|+
T Consensus 24 ~~i~~e~-~~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 24 LLLLVQG-EDGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CeEEEeC-CChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3444444 3344678899999864322 36777777999999996 68899988775
No 223
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=94.69 E-value=0.45 Score=53.61 Aligned_cols=127 Identities=20% Similarity=0.280 Sum_probs=95.9
Q ss_pred cchHHHHHH-HHHHhh--hcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEe
Q 004103 364 SGKFELLDR-LLPKLR--KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 440 (773)
Q Consensus 364 s~K~~~L~~-ll~~l~--~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlS 440 (773)
..+++...+ +|+.+. ....++|||...--..-.|..+|...++.++.++--++..+-..+-..|..|..+ ++|++
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEE
Confidence 446666555 778777 3456899999877667778899999999999999999999999999999998755 56666
Q ss_pred cccc-cccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCC----cCeEEEEEEEeC
Q 004103 441 TRAG-GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQ----KKEVRVFVLVSV 492 (773)
Q Consensus 441 t~ag-g~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ----~k~V~V~rLi~~ 492 (773)
-++- =.=..+.++.+||+|.+|-+|.-|...+.-...-.+ ..++.|..|.++
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 5552 234557789999999999999999887765554333 234555556554
No 224
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.68 E-value=0.23 Score=54.23 Aligned_cols=46 Identities=24% Similarity=0.251 Sum_probs=36.0
Q ss_pred CchHHHHHHHHHHHHhhcCCCCe-EEecCCCCCHHHHHHHHHHHHHHh
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNG-ILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~g-ILademGlGKTi~aiali~~l~~~ 101 (773)
.++|+|....+.++.. .+-.++ ++..+.|+|||..|.+++..+.-.
T Consensus 3 ~~yPWl~~~~~~~~~~-~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR-GRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHC-CCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 4689999998888875 222334 578999999999999999888764
No 225
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.67 E-value=0.31 Score=57.71 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=21.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
.|+..+.|+|||..+..++..+...
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhc
Confidence 3789999999999999988887764
No 226
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.58 E-value=0.68 Score=51.41 Aligned_cols=124 Identities=13% Similarity=0.175 Sum_probs=67.3
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC-C---cchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-K---AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS 152 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP-~---sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~ 152 (773)
..|..++|+|||.++..++..+... ..++.++.- . ..+.||.. |...
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~~~---GkkVglI~aDt~RiaAvEQLk~----yae~---------------------- 294 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQD----YVKT---------------------- 294 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEEecCCcchHHHHHHHH----Hhhh----------------------
Confidence 3678899999999988888777543 224555543 2 23445542 2211
Q ss_pred hcCCccEE-EcCHHHHHHhHHHHhh-cCeeEEEEccccccCChhhH---HHHHHHccc-cceEEEecCCCCCCCHHHHHH
Q 004103 153 ERGRFNVL-ITHYDLIMRDRQYLKK-VQWIYMIVDEGHRLKNHECA---LAKTISGYQ-IQRRLLLTGTPIQNSLQELWS 226 (773)
Q Consensus 153 ~~~~~~Vv-ItTye~l~~~~~~l~~-~~~~~vIiDEaH~lkn~~s~---~~~~l~~~~-~~~rllLTgTP~~n~~~el~~ 226 (773)
.++.++ +.+...+......+.. .++++||||-+=+.-+.... +.+.+.... ....|.|+||--.+.+.++..
T Consensus 295 --lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 295 --IGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred --cCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 122222 3344555444444443 36899999988665432222 223332222 233456888866666666655
Q ss_pred hhccc
Q 004103 227 LLNFL 231 (773)
Q Consensus 227 lL~~L 231 (773)
.++.+
T Consensus 373 ~F~~~ 377 (436)
T PRK11889 373 NFKDI 377 (436)
T ss_pred HhcCC
Confidence 55543
No 227
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.56 E-value=0.13 Score=49.02 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCC----eEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc--ccccCCccc--CCeeEEeCCCC
Q 004103 394 MDILEIYLKLNDF----KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA--GGLGLNLQT--ADTVIIFDSDW 463 (773)
Q Consensus 394 ld~L~~~L~~~g~----~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a--gg~GLNL~~--ad~VI~~D~~w 463 (773)
|+.+.+++...+. ..+.+.+..+ .+...+++.|+........+|+++.. .++|||++. +..||+...|+
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4444455544332 2344445433 34578899998643210125555554 899999997 78999988775
No 228
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.42 E-value=0.53 Score=45.94 Aligned_cols=139 Identities=18% Similarity=0.214 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHH-hhcCCceEEE
Q 004103 60 QLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFS-TWAPSIAAVV 135 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~--~g-ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~-k~~p~~~v~~ 135 (773)
|.+.+..+...+.++. +. |+..+.|.||+..|.+++..++....... |-.....=. .+. .-.|++.++-
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~------~c~~c~~c~-~~~~~~~~d~~~~~ 74 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED------PCGECRSCR-RIEEGNHPDFIIIK 74 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--------SSSHHHH-HHHTT-CTTEEEEE
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC------CCCCCHHHH-HHHhccCcceEEEe
Confidence 4555666665554442 33 78899999999999999998877643322 211112111 222 2234433332
Q ss_pred ecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHh----hcCeeEEEEccccccCC-hhhHHHHHHHccccceEE
Q 004103 136 YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRL 210 (773)
Q Consensus 136 ~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~----~~~~~~vIiDEaH~lkn-~~s~~~~~l~~~~~~~rl 210 (773)
-.+... ...-+.+..-...+. ...+.++||||||.|.. ....+-+.|...+..-++
T Consensus 75 ~~~~~~-------------------~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 75 PDKKKK-------------------SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp TTTSSS-------------------SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred cccccc-------------------hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 111100 001122222112211 13588999999999843 334566777777777777
Q ss_pred EecCCCCCCCHHHH
Q 004103 211 LLTGTPIQNSLQEL 224 (773)
Q Consensus 211 lLTgTP~~n~~~el 224 (773)
+|+.+-..+-+.-+
T Consensus 136 iL~t~~~~~il~TI 149 (162)
T PF13177_consen 136 ILITNNPSKILPTI 149 (162)
T ss_dssp EEEES-GGGS-HHH
T ss_pred EEEECChHHChHHH
Confidence 77776544444433
No 229
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.34 E-value=0.16 Score=60.90 Aligned_cols=148 Identities=18% Similarity=0.180 Sum_probs=86.0
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCceE
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAA 133 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v 133 (773)
.|-.-|..|+...+.. ....-|+.. +|+|||.+...++.-|...+ +.+|+.+=+ +.++|-...+..+.- .
T Consensus 669 ~LN~dQr~A~~k~L~a--edy~LI~GM-PGTGKTTtI~~LIkiL~~~g---kkVLLtsyThsAVDNILiKL~~~~i--~- 739 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAA--EDYALILGM-PGTGKTTTISLLIKILVALG---KKVLLTSYTHSAVDNILIKLKGFGI--Y- 739 (1100)
T ss_pred hcCHHHHHHHHHHHhc--cchheeecC-CCCCchhhHHHHHHHHHHcC---CeEEEEehhhHHHHHHHHHHhccCc--c-
Confidence 6888999999776641 223334444 79999988888887776653 477887766 778888777766532 1
Q ss_pred EEecCChhHHHHHHHHH--------------HhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHH
Q 004103 134 VVYDGRPDERKAMREEF--------------FSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAK 199 (773)
Q Consensus 134 ~~~~g~~~~r~~~~~~~--------------~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~ 199 (773)
++--|.........+++ ........||.+|---+. ...|...+|||+|||||-.+.-+-
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~lP~----- 812 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILLPL----- 812 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEccccccccch-----
Confidence 11123222111111111 111144556665543332 345666789999999998774322
Q ss_pred HHHccccceEEEecCCCCC
Q 004103 200 TISGYQIQRRLLLTGTPIQ 218 (773)
Q Consensus 200 ~l~~~~~~~rllLTgTP~~ 218 (773)
.|-.+....+..|-|-+.|
T Consensus 813 ~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 813 CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhhhhhhcceEEEeccccc
Confidence 2333344556667776543
No 230
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.32 E-value=0.35 Score=52.45 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=26.9
Q ss_pred CeeEEEEccccccCCh--hhHHHHHHHccccceEEEecCCCCC
Q 004103 178 QWIYMIVDEGHRLKNH--ECALAKTISGYQIQRRLLLTGTPIQ 218 (773)
Q Consensus 178 ~~~~vIiDEaH~lkn~--~s~~~~~l~~~~~~~rllLTgTP~~ 218 (773)
..++|||||+|++... ...+...+..+....++++|++...
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 4679999999998332 2334444555566677888886543
No 231
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.22 E-value=12 Score=45.79 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~ 100 (773)
..|.||..++|+|||..+-+++..+..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999998777776655
No 232
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.19 E-value=0.15 Score=55.76 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=26.0
Q ss_pred HHHHHHhhcCCC--CeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 64 LQWMLSLFNNNL--NGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 64 v~~l~~~~~~~~--~gILademGlGKTi~aiali~~l~~ 100 (773)
+.++......+. +.++..+.|+|||..+.+++..+..
T Consensus 24 ~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 24 VERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 333333333444 5688999999999999888877653
No 233
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.19 E-value=0.45 Score=50.19 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHhhcCCC-CeEEecCCCCCHHHHHHHHHHHH
Q 004103 57 RAYQLEGLQWMLSLFNNNL-NGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~~~~~-~gILademGlGKTi~aiali~~l 98 (773)
.+.+..++..+......+. ..+|..+.|+|||..+-.++..+
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 3445556665544333333 35789999999998776655443
No 234
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.14 E-value=0.49 Score=54.92 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEecCCCCCHHHHHHHHHHHHHHh
Q 004103 60 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~--~~g-ILademGlGKTi~aiali~~l~~~ 101 (773)
|...+..+...+.++ .+. |+..+.|+|||..|..++..+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444444444443232 233 789999999999998888877653
No 235
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.13 E-value=0.6 Score=48.78 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhh---cCC-CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHh
Q 004103 58 AYQLEGLQWMLSLF---NNN-LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 126 (773)
Q Consensus 58 pyQ~~gv~~l~~~~---~~~-~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k 126 (773)
+.|..++..+.... ..+ .+.+|..++|+|||..+.+++.++...+ .+++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEE----EHHHHHHHHHH
Confidence 45666666554432 222 3458899999999999999999887642 244444 34556555543
No 236
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.07 E-value=0.066 Score=54.25 Aligned_cols=29 Identities=34% Similarity=0.360 Sum_probs=23.7
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 72 NNNLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 72 ~~~~~gILademGlGKTi~aiali~~l~~ 100 (773)
.+-.+-|++.++|.|||..+.+++..|+-
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 44456799999999999999888877754
No 237
>PRK14974 cell division protein FtsY; Provisional
Probab=94.06 E-value=0.69 Score=50.63 Aligned_cols=34 Identities=32% Similarity=0.276 Sum_probs=23.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 113 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP 113 (773)
.++...+|+|||.++..++.++... ..+++++..
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~---g~~V~li~~ 176 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKN---GFSVVIAAG 176 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEecC
Confidence 3678899999998887777766543 225555543
No 238
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.05 E-value=0.29 Score=54.40 Aligned_cols=40 Identities=20% Similarity=0.127 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEecCCCCCHHHHHHHHHHHHH
Q 004103 60 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~--~~g-ILademGlGKTi~aiali~~l~ 99 (773)
|...+..+...+..+ .+. ++..+.|+|||..|-+++..+.
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 444555444443333 234 7899999999999988887765
No 239
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.91 E-value=0.26 Score=56.52 Aligned_cols=43 Identities=21% Similarity=-0.020 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 58 AYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 58 pyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~ 100 (773)
+|-...+..++..-.-+..-|+..+.|+|||..|-+++..+..
T Consensus 20 ~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 20 DHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3444445444432111122488999999999999888777654
No 240
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.87 E-value=0.86 Score=52.37 Aligned_cols=117 Identities=23% Similarity=0.268 Sum_probs=58.3
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEEecCCh-hHHHHHHHHHHhhc
Q 004103 76 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRP-DERKAMREEFFSER 154 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~~~g~~-~~r~~~~~~~~~~~ 154 (773)
.-|+..+.|+|||..|..++..+....+... -|-..+.+...-.....|+ ++.+.+.. .....++...
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~-----~pCg~C~~C~~i~~~~~~D--v~eidaas~~~vddIR~Ii---- 105 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGPTS-----DPCGTCHNCISIKNSNHPD--VIEIDAASNTSVDDIKVIL---- 105 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCCCC-----CCccccHHHHHHhccCCCC--EEEEecccCCCHHHHHHHH----
Confidence 4578999999999999888777655432211 1223333333322233333 33333321 1111111110
Q ss_pred CCccEEEcCHHHHHHhHHHHh-hcCeeEEEEccccccCCh-hhHHHHHHHccccceEEEecCCCC
Q 004103 155 GRFNVLITHYDLIMRDRQYLK-KVQWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTPI 217 (773)
Q Consensus 155 ~~~~VvItTye~l~~~~~~l~-~~~~~~vIiDEaH~lkn~-~s~~~~~l~~~~~~~rllLTgTP~ 217 (773)
....... .-++.++||||+|.+... ...+.+.+...+..-+++|+.|-.
T Consensus 106 --------------e~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~ 156 (491)
T PRK14964 106 --------------ENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEV 156 (491)
T ss_pred --------------HHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 0001110 126789999999999542 223444444444555566666543
No 241
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.86 E-value=0.66 Score=52.60 Aligned_cols=128 Identities=16% Similarity=0.191 Sum_probs=68.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHHH-HhcCCCCCEEEEeCCcchHHHHHHHHhhcC--CceEEEecCChhHHHHHHHHHHhh
Q 004103 77 GILADEMGLGKTIQTIALIAYLL-ENKGVTGPHVIVAPKAVLPNWINEFSTWAP--SIAAVVYDGRPDERKAMREEFFSE 153 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~-~~~~~~gp~LIVvP~sll~qW~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~ 153 (773)
.++..++|+|||.+++.++.++. ... ..++.+|.--.--..-..++..|.. ++.+.
T Consensus 224 i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~------------------- 282 (424)
T PRK05703 224 VALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRIGAVEQLKTYAKIMGIPVE------------------- 282 (424)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHHHHHHHHHHHHHHhCCceE-------------------
Confidence 36778999999999888887775 322 1244444322110001122333321 11111
Q ss_pred cCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhh---HHHHHHH-c-cccceEEEecCCCCCCCHHHHHHhh
Q 004103 154 RGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC---ALAKTIS-G-YQIQRRLLLTGTPIQNSLQELWSLL 228 (773)
Q Consensus 154 ~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s---~~~~~l~-~-~~~~~rllLTgTP~~n~~~el~~lL 228 (773)
++.+...+......+. .+++||||-+-+...... .+...+. . ......++|++|+-...+.+++..+
T Consensus 283 ------~~~~~~~l~~~l~~~~--~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 283 ------VVYDPKELAKALEQLR--DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred ------ccCCHHhHHHHHHHhC--CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 1122222222222222 579999999876533221 2223333 1 2345679999999888888888777
Q ss_pred ccccC
Q 004103 229 NFLLP 233 (773)
Q Consensus 229 ~~L~p 233 (773)
..+.+
T Consensus 355 ~~~~~ 359 (424)
T PRK05703 355 SRLPL 359 (424)
T ss_pred CCCCC
Confidence 76543
No 242
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.77 E-value=0.35 Score=49.53 Aligned_cols=27 Identities=30% Similarity=0.042 Sum_probs=21.8
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~ 100 (773)
+.+.+|..+.|+|||..+.+++.++..
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 445678999999999999888777654
No 243
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.75 E-value=0.28 Score=56.88 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=20.7
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHh
Q 004103 78 ILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~ 101 (773)
|+..+.|+|||..+.+++..+...
T Consensus 40 Lf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 40 LFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred EEECCCCCcHHHHHHHHHHHhcCC
Confidence 789999999999998888887653
No 244
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.68 E-value=0.9 Score=50.28 Aligned_cols=46 Identities=28% Similarity=0.194 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHHHhhc---CCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 56 LRAYQLEGLQWMLSLFN---NNLNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~~~---~~~~gILademGlGKTi~aiali~~l~~~ 101 (773)
=|..|++.+...+.... .+.+.++..+.|+|||.++-+++..+.+.
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 47888888766655422 22456889999999999988888777543
No 245
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=0.81 Score=53.80 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEecCCCCCHHHHHHHHHHHHHHh
Q 004103 60 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~--~~g-ILademGlGKTi~aiali~~l~~~ 101 (773)
|...+..+...+..+ .+. |+..+.|+|||..|..++..+...
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 444444444443333 233 789999999999999988877653
No 246
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.63 E-value=0.63 Score=48.35 Aligned_cols=26 Identities=23% Similarity=0.010 Sum_probs=20.8
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~ 100 (773)
...+|..+.|+|||..+.+++.++..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35688999999999888777776654
No 247
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.55 E-value=0.33 Score=56.46 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~ 100 (773)
-|+..+.|+|||..|..++..+..
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 378999999999999988887764
No 248
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.47 E-value=0.25 Score=52.33 Aligned_cols=42 Identities=19% Similarity=0.036 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhcC--CCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 59 YQLEGLQWMLSLFNN--NLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 59 yQ~~gv~~l~~~~~~--~~~gILademGlGKTi~aiali~~l~~ 100 (773)
+|...|+-+...... ..+-++..+.|+|||-++++++..+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 688777776655433 233477899999999999999988765
No 249
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.44 E-value=0.68 Score=54.69 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcCCC---CeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 60 QLEGLQWMLSLFNNNL---NGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~---~gILademGlGKTi~aiali~~l~~~ 101 (773)
|...+..+...+..+. .-|+..+.|+|||..|..++..+...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 4444444444433332 34788999999999999998887654
No 250
>PF13173 AAA_14: AAA domain
Probab=93.39 E-value=0.41 Score=44.55 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=28.3
Q ss_pred CeeEEEEccccccCChhhHHHHHHHccccceEEEecCCCCC
Q 004103 178 QWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 218 (773)
Q Consensus 178 ~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllLTgTP~~ 218 (773)
+-.+|||||+|++.+....+...+... ....+++||+-..
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccchH
Confidence 567899999999987555544444433 4578999998543
No 251
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=93.35 E-value=0.8 Score=55.28 Aligned_cols=97 Identities=21% Similarity=0.226 Sum_probs=69.3
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHH----HHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDI----LEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 438 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~----L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~L 438 (773)
.|||-....-.+-.....|.+++|.+.....+.- +..++...|+++..++|+++..+|..+++...+++.+ ++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 4556543333222233468899999998866554 4555556689999999999999999999999987766 56
Q ss_pred Eeccc-ccccCCcccCCeeEEeCCC
Q 004103 439 LSTRA-GGLGLNLQTADTVIIFDSD 462 (773)
Q Consensus 439 lSt~a-gg~GLNL~~ad~VI~~D~~ 462 (773)
++|.+ ....+.+.....||+=+.+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred EchHHHhcccchhcccceEEEechh
Confidence 66654 4556778888888875554
No 252
>PRK05580 primosome assembly protein PriA; Validated
Probab=93.29 E-value=1 Score=54.30 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=73.9
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHh-CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEec
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL-NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 441 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~-~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt 441 (773)
.|||......++......|.++||.+.....+..+.+.|.. .|..+..++|+++..+|.....+...+..+ ++++|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEec
Confidence 47787777777766666788999999999888887777765 488999999999999999888888777665 67777
Q ss_pred ccccccCCcccCCeeEEeCC
Q 004103 442 RAGGLGLNLQTADTVIIFDS 461 (773)
Q Consensus 442 ~agg~GLNL~~ad~VI~~D~ 461 (773)
+.+- =+.+.....||+-+-
T Consensus 249 rsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cHHh-cccccCCCEEEEECC
Confidence 7443 255667777877664
No 253
>PRK08116 hypothetical protein; Validated
Probab=93.26 E-value=0.78 Score=48.69 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=29.1
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchH
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP 118 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~ 118 (773)
.+.+|..++|+|||..+.+++.++... ..+++++.-..++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~ 155 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLN 155 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHH
Confidence 346789999999999999999988775 23555554333333
No 254
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.20 E-value=0.75 Score=51.59 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=20.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
-|+..+.|+|||..|.+++..+...
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4688999999999999988877654
No 255
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.15 E-value=0.91 Score=48.51 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=29.0
Q ss_pred HHHHhhcCeeEEEEcccccc-CChhhH---HHHHHHccccc--eEEEecCCC
Q 004103 171 RQYLKKVQWIYMIVDEGHRL-KNHECA---LAKTISGYQIQ--RRLLLTGTP 216 (773)
Q Consensus 171 ~~~l~~~~~~~vIiDEaH~l-kn~~s~---~~~~l~~~~~~--~rllLTgTP 216 (773)
...|..++..++||||.|++ .+...+ ...+++.+... --+.+.||+
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 35678889999999999996 333333 33334444333 225667875
No 256
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.15 E-value=0.82 Score=49.81 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=37.7
Q ss_pred CchHHHHHHHHHHHHhhcCCC--Ce-EEecCCCCCHHHHHHHHHHHHHHhc
Q 004103 55 ELRAYQLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLENK 102 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~--~g-ILademGlGKTi~aiali~~l~~~~ 102 (773)
.++|+|...-+.+...+.++. ++ ++..+.|+||+..|.+++.++.-..
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 357888888887877766543 34 5789999999999999999888643
No 257
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.15 E-value=0.57 Score=55.14 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=20.6
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~ 100 (773)
-|+..+.|+|||.+|..++..+..
T Consensus 41 ~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 41 YLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred EEEECCCCCCHHHHHHHHHHhccc
Confidence 467899999999999988887764
No 258
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.02 E-value=0.65 Score=53.68 Aligned_cols=42 Identities=17% Similarity=0.040 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCC---CCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 60 QLEGLQWMLSLFNNN---LNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~---~~gILademGlGKTi~aiali~~l~~~ 101 (773)
|...+..+...+.++ ...|+..+.|+|||.+|-.++..+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 444444444433333 346889999999999998888877653
No 259
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.98 E-value=0.9 Score=49.81 Aligned_cols=47 Identities=11% Similarity=0.225 Sum_probs=38.1
Q ss_pred CchHHHHHHHHHHHHhhcCCC--Ce-EEecCCCCCHHHHHHHHHHHHHHh
Q 004103 55 ELRAYQLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~--~g-ILademGlGKTi~aiali~~l~~~ 101 (773)
.++|+|......+...+..+. ++ +++.+.|+||+..|.+++.++.-.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 468888888888887765543 34 678999999999999999998764
No 260
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.97 E-value=1.1 Score=48.65 Aligned_cols=151 Identities=16% Similarity=0.124 Sum_probs=79.9
Q ss_pred CchHHHHHHHHHHHHhhcCCC--C-eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCc
Q 004103 55 ELRAYQLEGLQWMLSLFNNNL--N-GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSI 131 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~--~-gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~ 131 (773)
.++|+|......+...+.++. + -++..+.|+||+..|.+++..++-....... .|+ .-+|.. ..-.|++
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~---~c~~~~--~g~HPD~ 75 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQR---TRQLIA--AGTHPDL 75 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cch---HHHHHh--cCCCCCE
Confidence 589999999988887765443 3 3678999999999999999888764311111 111 111211 1123554
Q ss_pred eEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhh----cCeeEEEEccccccCC-hhhHHHHHHHcccc
Q 004103 132 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKK----VQWIYMIVDEGHRLKN-HECALAKTISGYQI 206 (773)
Q Consensus 132 ~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~----~~~~~vIiDEaH~lkn-~~s~~~~~l~~~~~ 206 (773)
.++-..-.... .+.. .-+.-+.+..-..++.. -.+.++|||+|++|.. ....+-+.+..-+.
T Consensus 76 ~~i~~~p~~~~------------~k~~-~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 142 (319)
T PRK08769 76 QLVSFIPNRTG------------DKLR-TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSP 142 (319)
T ss_pred EEEecCCCccc------------cccc-ccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCC
Confidence 44421100000 0000 01112333222222221 2578999999999943 22345555655555
Q ss_pred ceEEEecCCCCCCCHHHHHH
Q 004103 207 QRRLLLTGTPIQNSLQELWS 226 (773)
Q Consensus 207 ~~rllLTgTP~~n~~~el~~ 226 (773)
...++|++.-...-+.-+.+
T Consensus 143 ~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 143 GRYLWLISAQPARLPATIRS 162 (319)
T ss_pred CCeEEEEECChhhCchHHHh
Confidence 66666666543434444443
No 261
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.95 E-value=1.1 Score=49.18 Aligned_cols=131 Identities=15% Similarity=0.102 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhhcCC--CCe-EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEE
Q 004103 59 YQLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVV 135 (773)
Q Consensus 59 yQ~~gv~~l~~~~~~~--~~g-ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~ 135 (773)
.|...+..+...+..+ .+. ++..+.|.|||..|.+++..+.......+. |-..+.....-.....|++..+.
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----PCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCcCHHHHHHhcCCCCCEEEec
Confidence 3555555555544333 234 789999999999999888887654322211 22223333333344456666655
Q ss_pred ecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHh----hcCeeEEEEccccccCC-hhhHHHHHHHccccceEE
Q 004103 136 YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRL 210 (773)
Q Consensus 136 ~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~----~~~~~~vIiDEaH~lkn-~~s~~~~~l~~~~~~~rl 210 (773)
..|..-. .+.+..-...+. .-.+.++||||+|++.. ....+-+.+...+..-.+
T Consensus 85 ~~~~~i~---------------------id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 85 PDGQSIK---------------------KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred cccccCC---------------------HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceE
Confidence 5443211 222222222222 12578999999999953 223455555554555666
Q ss_pred EecCC
Q 004103 211 LLTGT 215 (773)
Q Consensus 211 lLTgT 215 (773)
+|+.+
T Consensus 144 Il~t~ 148 (329)
T PRK08058 144 ILLTE 148 (329)
T ss_pred EEEeC
Confidence 66665
No 262
>PRK06921 hypothetical protein; Provisional
Probab=92.80 E-value=0.75 Score=48.74 Aligned_cols=28 Identities=25% Similarity=0.146 Sum_probs=23.6
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~ 101 (773)
+.+.+|..++|+|||..+.+++..+...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 4556889999999999999998888764
No 263
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.73 E-value=0.74 Score=49.83 Aligned_cols=116 Identities=17% Similarity=0.136 Sum_probs=61.1
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcCC
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGR 156 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~ 156 (773)
-+++.+.|+|||..|.+++..+.............+ ......-..+.|++..+...+...
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~lel~~s~~~~--------------- 86 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC-----RSCKLIPAGNHPDFLELNPSDLRK--------------- 86 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch-----hhhhHHhhcCCCceEEecccccCC---------------
Confidence 578999999999999999998876432221111111 222222223334333332222211
Q ss_pred ccEEEcCHHHHHHhHHHHh----hcCeeEEEEccccccCC-hhhHHHHHHHccccceEEEecCC
Q 004103 157 FNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGT 215 (773)
Q Consensus 157 ~~VvItTye~l~~~~~~l~----~~~~~~vIiDEaH~lkn-~~s~~~~~l~~~~~~~rllLTgT 215 (773)
.+ ...+.+..-...+. ...+.+||||||+.|.. ....+-+.+...+...+++|+..
T Consensus 87 ~~---i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 87 ID---IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred Cc---chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 11 11111211111111 24789999999999843 23345555555567777777664
No 264
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.64 E-value=1.2 Score=49.39 Aligned_cols=142 Identities=14% Similarity=0.216 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEecCCCCCHHHHHHHHHHHHHHhcCCC-------CCEEEEeCCcchHHHHHHHHhhcC
Q 004103 60 QLEGLQWMLSLFNNNL--N-GILADEMGLGKTIQTIALIAYLLENKGVT-------GPHVIVAPKAVLPNWINEFSTWAP 129 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~--~-gILademGlGKTi~aiali~~l~~~~~~~-------gp~LIVvP~sll~qW~~E~~k~~p 129 (773)
|.++...+.+.+.++. + -++..+.|+||+..|.+++.+++...... ...|.+|+..-.-.|. ...-.|
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i--~~~~HP 101 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI--AAGAHG 101 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH--HccCCC
Confidence 5566666666555442 3 36889999999999999999998653211 1223344432222221 122336
Q ss_pred CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHh----hcCeeEEEEccccccCC-hhhHHHHHHHcc
Q 004103 130 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGY 204 (773)
Q Consensus 130 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~----~~~~~~vIiDEaH~lkn-~~s~~~~~l~~~ 204 (773)
++.++.-...... ....- .++-+.+..-..++. .-.+.+|||||+|++.. ....+.+.+...
T Consensus 102 Dl~~i~~~~~~~~------------~~~~~-~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 102 GLLTLERSWNEKG------------KRLRT-VITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred CeEEEeccccccc------------ccccc-cccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 6554432110000 00000 012333333233322 23688999999999832 122444555554
Q ss_pred ccceE-EEecCCC
Q 004103 205 QIQRR-LLLTGTP 216 (773)
Q Consensus 205 ~~~~r-llLTgTP 216 (773)
+.... +++|-.|
T Consensus 169 p~~~~~IL~t~~~ 181 (365)
T PRK07471 169 PARSLFLLVSHAP 181 (365)
T ss_pred CCCeEEEEEECCc
Confidence 43333 4444444
No 265
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.48 E-value=1 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=19.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHHH
Q 004103 78 ILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~ 100 (773)
|+..+.|+|||..|-.++..+..
T Consensus 42 Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 42 LFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 78999999999999888877754
No 266
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=92.46 E-value=0.84 Score=46.93 Aligned_cols=28 Identities=25% Similarity=0.068 Sum_probs=21.7
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~ 100 (773)
.+...+|..+.|+|||..+.++...+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445689999999999988777766544
No 267
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.44 E-value=2.3 Score=47.92 Aligned_cols=41 Identities=15% Similarity=0.009 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEecCCCCCHHHHHHHHHHHHHH
Q 004103 60 QLEGLQWMLSLFNNN--LN-GILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~--~~-gILademGlGKTi~aiali~~l~~ 100 (773)
|...+..+.....++ .+ -|+..+.|+|||..|.+++..+..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344444444444343 23 468899999999999999887765
No 268
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=92.43 E-value=0.73 Score=56.11 Aligned_cols=126 Identities=13% Similarity=0.071 Sum_probs=73.0
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCce
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~ 132 (773)
+..|.+-|.+++..++. .+.-.+|....|+|||.+.-+++..+... ..++++++|+....+-..+- . +..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~~~ApTg~Aa~~L~~~---~-g~~ 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEAA---GYRVIGAALSGKAAEGLQAE---S-GIE 419 (744)
T ss_pred cCCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHhC---CCeEEEEeCcHHHHHHHHhc---c-CCc
Confidence 45799999999988773 23346899999999998766655444332 34788889986544322211 0 111
Q ss_pred EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHh--HHHHhhcCeeEEEEccccccCChhhHHHHHHH-ccccceE
Q 004103 133 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKNHECALAKTIS-GYQIQRR 209 (773)
Q Consensus 133 v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~-~~~~~~r 209 (773)
.. |...+... ...-.....++|||||+..+... .+...+. ......+
T Consensus 420 a~----------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~--~~~~Ll~~~~~~~~k 469 (744)
T TIGR02768 420 SR----------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR--QMARVLKEAEEAGAK 469 (744)
T ss_pred ee----------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCHH--HHHHHHHHHHhcCCE
Confidence 00 00000000 00001135789999999988532 2333443 2346678
Q ss_pred EEecCCCCC
Q 004103 210 LLLTGTPIQ 218 (773)
Q Consensus 210 llLTgTP~~ 218 (773)
++|-|=|-|
T Consensus 470 liLVGD~~Q 478 (744)
T TIGR02768 470 VVLVGDPEQ 478 (744)
T ss_pred EEEECChHH
Confidence 999996543
No 269
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.42 E-value=0.88 Score=53.79 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEecCCCCCHHHHHHHHHHHHHHh
Q 004103 60 QLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~--~g-ILademGlGKTi~aiali~~l~~~ 101 (773)
|...+..+...+.++. +. |+..+.|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4455555554443332 34 789999999999999888887653
No 270
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.40 E-value=0.82 Score=52.95 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEecCCCCCHHHHHHHHHHHHHHh
Q 004103 60 QLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~--~g-ILademGlGKTi~aiali~~l~~~ 101 (773)
|...+..+......+. +. ++..+.|+|||..+.+++..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4444444444433433 23 889999999999999888887654
No 271
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.37 E-value=0.89 Score=54.01 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=20.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
-|+..+.|+|||..+.+++..+...
T Consensus 41 ~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 41 YLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred EEEECCCCCcHHHHHHHHHHHhccc
Confidence 3889999999999998888776543
No 272
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.31 E-value=1.7 Score=47.35 Aligned_cols=148 Identities=12% Similarity=0.045 Sum_probs=79.5
Q ss_pred CchHHHHHHHHHHHHhhcCCC--Ce-EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCc
Q 004103 55 ELRAYQLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSI 131 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~--~g-ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~ 131 (773)
.++|+|......+...+.++. ++ ++..+.|+||+..|.+++.++.-.....+ |=..+..-..-...-.|++
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~------~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE------ACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC------CCCCCHHHHHHHcCCCCCE
Confidence 578899888888887765443 23 67899999999999999988876532111 1111221111111223554
Q ss_pred eEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHh----hcCeeEEEEccccccCC-hhhHHHHHHHcccc
Q 004103 132 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQI 206 (773)
Q Consensus 132 ~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~----~~~~~~vIiDEaH~lkn-~~s~~~~~l~~~~~ 206 (773)
..+.-.+... .++-+.+..-..++. .-.+.++|||+||+|.. ....+-+.+..-+.
T Consensus 77 ~~i~p~~~~~-------------------~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 137 (319)
T PRK06090 77 HVIKPEKEGK-------------------SITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAP 137 (319)
T ss_pred EEEecCcCCC-------------------cCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCC
Confidence 4432221000 011222222112221 23588999999999953 22345555555455
Q ss_pred ceEEEecCCCCCCCHHHHHHh
Q 004103 207 QRRLLLTGTPIQNSLQELWSL 227 (773)
Q Consensus 207 ~~rllLTgTP~~n~~~el~~l 227 (773)
.-.++|+++-...-+.-+.+-
T Consensus 138 ~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred CeEEEEEECChhhChHHHHhc
Confidence 555666655434444444443
No 273
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.30 E-value=2 Score=49.03 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=21.8
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 76 NGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~~~ 101 (773)
..+|..++|+|||..+-++..++...
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~ 157 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHh
Confidence 35789999999999998888877664
No 274
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.24 E-value=1.7 Score=52.75 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=36.0
Q ss_pred CCCCCcCCCCchHHHHHHHHHHHHh-hc-CCC-CeE-EecCCCCCHHHHHHHHHHHHHHh
Q 004103 46 EQPTLLQGGELRAYQLEGLQWMLSL-FN-NNL-NGI-LADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 46 ~~P~~l~~~~LrpyQ~~gv~~l~~~-~~-~~~-~gI-LademGlGKTi~aiali~~l~~~ 101 (773)
..|..+ .-|+-|++.|...+.. .. .+. ++| |...+|+|||.++-.++..|.+.
T Consensus 752 YVPD~L---PhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 752 VVPKYL---PCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred cCCCcC---CChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 345444 3588888888766654 32 222 333 79999999999998888777543
No 275
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=92.21 E-value=0.31 Score=52.24 Aligned_cols=65 Identities=17% Similarity=0.095 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc-CCCCCEEEEeCCcc-hHHHHHHHHh
Q 004103 56 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPKAV-LPNWINEFST 126 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~-~~~gp~LIVvP~sl-l~qW~~E~~k 126 (773)
|.+-|..+|.+ . ....++-...|+|||.+++.-+.+++..+ .....+|+|+++.. ...-...+..
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 45778888875 3 44456666799999999999999998876 34457899999844 3334444444
No 276
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.19 E-value=1.2 Score=44.01 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=37.3
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 127 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~ 127 (773)
.+++.++|+|||..++.++...... ..+++++.......+....+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCCCHHHHHHHHHHc
Confidence 4688999999999999888877653 35789998877777776666554
No 277
>PRK08727 hypothetical protein; Validated
Probab=92.15 E-value=0.73 Score=47.79 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=20.8
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
.+|..++|+|||..+.+++..+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5889999999999888888776654
No 278
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.84 E-value=0.95 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.7
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHh
Q 004103 78 ILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~ 101 (773)
|+..+.|+|||..+..++..+...
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred EEECCCCCCHHHHHHHHHHhhcCC
Confidence 788999999999999888877653
No 279
>PRK05642 DNA replication initiation factor; Validated
Probab=91.82 E-value=0.95 Score=47.00 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=24.4
Q ss_pred eeEEEEccccccCChh---hHHHHHHHcc-ccceEEEecCC
Q 004103 179 WIYMIVDEGHRLKNHE---CALAKTISGY-QIQRRLLLTGT 215 (773)
Q Consensus 179 ~~~vIiDEaH~lkn~~---s~~~~~l~~~-~~~~rllLTgT 215 (773)
.+++|||+.|.+.+.. ..+...+..+ ....++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 4789999999886432 2355555333 34567888887
No 280
>PRK04195 replication factor C large subunit; Provisional
Probab=91.79 E-value=1.3 Score=51.19 Aligned_cols=51 Identities=22% Similarity=0.107 Sum_probs=30.7
Q ss_pred CCCcCCCCchHHHHHHHHHHHHhhcC---CCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 48 PTLLQGGELRAYQLEGLQWMLSLFNN---NLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 48 P~~l~~~~LrpyQ~~gv~~l~~~~~~---~~~gILademGlGKTi~aiali~~l 98 (773)
|..+......+.+...+.-.+..+.+ ....+|..+.|+|||..+-+++..+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 44443333445555555433333333 3456889999999998887776544
No 281
>PRK12377 putative replication protein; Provisional
Probab=91.72 E-value=1.5 Score=45.90 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=22.9
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~ 101 (773)
.+.+|..++|+|||..+.+++..+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 345788999999999999999988764
No 282
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.69 E-value=0.14 Score=59.99 Aligned_cols=163 Identities=15% Similarity=0.202 Sum_probs=97.1
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHH-HHhh---c
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINE-FSTW---A 128 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E-~~k~---~ 128 (773)
....|||.+-+..+.... -....+.-..-+|||.+++.++.+.+... .+|+|+|.|+ .....|..+ |... .
T Consensus 15 ~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQD--PGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeC--CCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 478999999887665311 23456778899999999988888887753 5799999999 666667643 3322 2
Q ss_pred CCceEEEec-CChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEcccccc----CChhhHHHHHH--
Q 004103 129 PSIAAVVYD-GRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRL----KNHECALAKTI-- 201 (773)
Q Consensus 129 p~~~v~~~~-g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~l----kn~~s~~~~~l-- 201 (773)
|.+.-.+.. ........+....+ ..-.+.++...+ ...|.....++|++||...+ ++.+.....+.
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f---~gg~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R 163 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRF---PGGFLYLVGANS----PSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKR 163 (557)
T ss_pred HHHHHHhCchhhcccCCchhheec---CCCEEEEEeCCC----CcccccCCcCEEEEechhhccccCccCCCHHHHHHHH
Confidence 322211111 00011111111111 112233333332 24467778899999999998 23333444333
Q ss_pred -HccccceEEEecCCCCCCCHHHHHHh
Q 004103 202 -SGYQIQRRLLLTGTPIQNSLQELWSL 227 (773)
Q Consensus 202 -~~~~~~~rllLTgTP~~n~~~el~~l 227 (773)
..+....++++..||.......++.+
T Consensus 164 ~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 164 TKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred HhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 45557788999999987654444443
No 283
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.62 E-value=1.2 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
-|+..+.|.|||..|.+++..+...
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccc
Confidence 3789999999999999888877653
No 284
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.59 E-value=1.5 Score=50.14 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=20.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
.+|..++|+|||..+-++..++...
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~ 168 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESN 168 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHh
Confidence 4689999999998887777766653
No 285
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=91.53 E-value=1.2 Score=50.91 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=21.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
.+|..++|+|||..+-++...+...
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~ 175 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEK 175 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999998888877664
No 286
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.42 E-value=1.4 Score=49.00 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=52.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcCC
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGR 156 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~ 156 (773)
.++.-++|.|||..++.++..+... .+++|+|.-.....|......++.-...
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs~~qi~~Ra~rlg~~~~------------------------ 137 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEESPEQIKLRADRLGISTE------------------------ 137 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcCHHHHHHHHHHcCCCcc------------------------
Confidence 3788999999999998888776543 2578888766555665544444321100
Q ss_pred ccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccC
Q 004103 157 FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLK 191 (773)
Q Consensus 157 ~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lk 191 (773)
++.+.....+..-...+...+.++||||+.+.+.
T Consensus 138 -~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 138 -NLYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred -cEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 1111111111112233455678999999998873
No 287
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.40 E-value=1.4 Score=51.27 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=75.6
Q ss_pred hhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEe
Q 004103 362 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 440 (773)
Q Consensus 362 ~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlS 440 (773)
..|||-+....++......|.++||.+........+.+.|... |..+..++|+++..+|.....+...++.+ |++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEEC
Confidence 4689999888888887788999999999998888887777654 78899999999999998888887776665 6777
Q ss_pred cccccccCCcccCCeeEEeCC
Q 004103 441 TRAGGLGLNLQTADTVIIFDS 461 (773)
Q Consensus 441 t~agg~GLNL~~ad~VI~~D~ 461 (773)
|+.+- =+-+.....||+-+-
T Consensus 83 Trsal-f~p~~~l~lIIVDEe 102 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDEE 102 (505)
T ss_pred ChHHH-cCcccCCCEEEEECC
Confidence 77533 244566777777653
No 288
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.36 E-value=0.68 Score=42.57 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=23.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcch
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 117 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll 117 (773)
+|..+.|+|||..+-.++.++ .-+++.+....+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhc------ccccccccccccc
Confidence 577899999998877776654 1255555554444
No 289
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.34 E-value=2.4 Score=49.97 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=19.7
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHh
Q 004103 78 ILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~ 101 (773)
|++.+.|+|||..|-.++..+...
T Consensus 42 Lf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 42 LFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCC
Confidence 679999999999988887766543
No 290
>PRK06893 DNA replication initiation factor; Validated
Probab=91.34 E-value=1.8 Score=44.72 Aligned_cols=25 Identities=20% Similarity=-0.017 Sum_probs=21.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
.+|..++|+|||..+.+++..+...
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3789999999999988888777654
No 291
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.32 E-value=0.16 Score=50.00 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=26.8
Q ss_pred CCccEEEcCHHHHHHhHHH--Hh--hcCeeEEEEccccccCC
Q 004103 155 GRFNVLITHYDLIMRDRQY--LK--KVQWIYMIVDEGHRLKN 192 (773)
Q Consensus 155 ~~~~VvItTye~l~~~~~~--l~--~~~~~~vIiDEaH~lkn 192 (773)
...+|||++|..+...... +. ..+-.+|||||||++-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 5678999999999875332 21 23456999999999843
No 292
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=91.28 E-value=1.9 Score=40.96 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=25.6
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 114 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~ 114 (773)
++..+.|+|||..+..++..+.. ..++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECC
Confidence 67788999999999888877755 24566766654
No 293
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.21 E-value=1.4 Score=45.80 Aligned_cols=46 Identities=30% Similarity=0.380 Sum_probs=28.1
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchH------HHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP------NWINEFST 126 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~------qW~~E~~k 126 (773)
+.+..++|+|||+..=+++..+-+ ...++|+.|+.++. -|..++..
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 466799999999987644444332 22345677775543 35555543
No 294
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=91.19 E-value=1.7 Score=48.97 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=21.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
.+|..+.|+|||..+-++..++...
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3789999999999998888887764
No 295
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=91.14 E-value=1.9 Score=51.60 Aligned_cols=97 Identities=21% Similarity=0.175 Sum_probs=67.8
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHH----HHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILE----IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 438 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~----~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~L 438 (773)
.|||-....-.+-.....|.+++|.+.....+..+. .++...|+++..++|+++..+|..+++...+++.+ ++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~---Ii 342 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH---LV 342 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC---EE
Confidence 455654332222222345789999999887665554 44445589999999999999999999999887766 56
Q ss_pred Eeccc-ccccCCcccCCeeEEeCCC
Q 004103 439 LSTRA-GGLGLNLQTADTVIIFDSD 462 (773)
Q Consensus 439 lSt~a-gg~GLNL~~ad~VI~~D~~ 462 (773)
++|.+ .-..+.+.....||+=+.+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred EecHHHHhccccccccceEEEechh
Confidence 66655 4456777788888875554
No 296
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.89 E-value=3.3 Score=45.27 Aligned_cols=51 Identities=20% Similarity=0.099 Sum_probs=31.3
Q ss_pred CCCcCCCCchHHHHHHHHHHHHhh----cCCCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 48 PTLLQGGELRAYQLEGLQWMLSLF----NNNLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 48 P~~l~~~~LrpyQ~~gv~~l~~~~----~~~~~gILademGlGKTi~aiali~~l 98 (773)
|..+....-++..++.+.-++... ....+.++..+.|+|||..+-+++..+
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 444443344555665555444332 123356889999999998887776554
No 297
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.80 E-value=2.1 Score=50.23 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=21.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
-|+..+.|+|||..|.+++..+...
T Consensus 41 ~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 41 YIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3689999999999999998887653
No 298
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=90.70 E-value=0.18 Score=60.84 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=72.9
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cch----HHHHHHHHhhcCCceEEEecCChhHHHHH
Q 004103 72 NNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVL----PNWINEFSTWAPSIAAVVYDGRPDERKAM 146 (773)
Q Consensus 72 ~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll----~qW~~E~~k~~p~~~v~~~~g~~~~r~~~ 146 (773)
+-..+.++.+++|+|||+.+-..+.+.....+ .+++++|+|. .++ ..|...+.. |+.+++-.+|....- .
T Consensus 941 ~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-~~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~pd--~ 1015 (1230)
T KOG0952|consen 941 HTDLNFLLGAPTGSGKTVVAELAIFRALSYYP-GSKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTPD--V 1015 (1230)
T ss_pred ecchhhhhcCCccCcchhHHHHHHHHHhccCC-CccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCCC--h
Confidence 34446688999999999998666655555444 3689999997 333 557654432 467777776654321 1
Q ss_pred HHHHHhhcCCccEEEcCHHHHHHhHHHHhh----cCeeEEEEccccccCCh
Q 004103 147 REEFFSERGRFNVLITHYDLIMRDRQYLKK----VQWIYMIVDEGHRLKNH 193 (773)
Q Consensus 147 ~~~~~~~~~~~~VvItTye~l~~~~~~l~~----~~~~~vIiDEaH~lkn~ 193 (773)
. .....+++|||++........+.. ..+..+|+||.|.++..
T Consensus 1016 ~-----~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1016 K-----AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred h-----heecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 0 115678999999987543332221 24567999999998653
No 299
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.67 E-value=2.4 Score=47.08 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=62.5
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcC--CceEEEecCChhHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAP--SIAAVVYDGRPDERKAMREEFF 151 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~ 151 (773)
+...+|..++|.|||.++..++..+....+. .++.+|+....-..=.+.+..|+. ++.+...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~--------------- 200 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAV--------------- 200 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecccccccHHHHHHHHHHHcCCceEec---------------
Confidence 3344788999999999998888776543221 244444432221111223333321 1222211
Q ss_pred hhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc-----ccceEEEecCCCCCCCHHHHH
Q 004103 152 SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-----QIQRRLLLTGTPIQNSLQELW 225 (773)
Q Consensus 152 ~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~-----~~~~rllLTgTP~~n~~~el~ 225 (773)
.+...+......+ .+.++|+||.+=+.-. +..+...+..+ .....|.|+||--...+.++.
T Consensus 201 ----------~~~~~l~~~l~~l--~~~DlVLIDTaG~~~~-d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 201 ----------KDGGDLQLALAEL--RNKHMVLIDTIGMSQR-DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred ----------CCcccHHHHHHHh--cCCCEEEEcCCCCCcc-cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 1111222212222 2458999999966532 22233333322 235578899997666666553
No 300
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.55 E-value=2.2 Score=49.31 Aligned_cols=41 Identities=22% Similarity=0.103 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEecCCCCCHHHHHHHHHHHHHH
Q 004103 60 QLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~--~g-ILademGlGKTi~aiali~~l~~ 100 (773)
|...+..+.....++. ++ ++..+.|+|||..|..++..+..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4444555555444432 33 67999999999988887776653
No 301
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.51 E-value=2 Score=50.60 Aligned_cols=25 Identities=32% Similarity=0.226 Sum_probs=20.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
.+|..+.|+|||..+.+++.++...
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~ 341 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRL 341 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5788999999999988888877653
No 302
>PHA02533 17 large terminase protein; Provisional
Probab=90.48 E-value=0.74 Score=53.69 Aligned_cols=56 Identities=23% Similarity=0.131 Sum_probs=38.0
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 114 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~ 114 (773)
..|.|+|..-+..|.. +.-.++.-.=..|||..+.+++.++.-..+ ...+++++|.
T Consensus 58 f~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCC
Confidence 5799999998877631 223366667789999998766655544322 3367778885
No 303
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=90.38 E-value=4.8 Score=45.05 Aligned_cols=45 Identities=29% Similarity=0.285 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHhh---cCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 57 RAYQLEGLQWMLSLF---NNNLNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~---~~~~~gILademGlGKTi~aiali~~l~~~ 101 (773)
|.-|++-+...+... ..+.+.++..+.|+|||..+-.++..+...
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 566666665554332 223457899999999999988888777654
No 304
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.36 E-value=1.3 Score=52.67 Aligned_cols=42 Identities=19% Similarity=0.011 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCCC---CeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 60 QLEGLQWMLSLFNNNL---NGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~---~gILademGlGKTi~aiali~~l~~~ 101 (773)
|...+..+...+..+. .-|+..+.|+|||..|.+++..+...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 4444444444444443 33789999999999999999888653
No 305
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=90.28 E-value=8.1 Score=43.00 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=70.9
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhh
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSE 153 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~ 153 (773)
++-..|..+||.|||.+..-+++.+....+...-.||-+-+.=+ --.++++.++. +.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI-GA~EQLk~Ya~--------------------im-- 259 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI-GAVEQLKTYAD--------------------IM-- 259 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh-hHHHHHHHHHH--------------------Hh--
Confidence 33346789999999987666665555222222222333322111 11222222221 00
Q ss_pred cCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccc-cCChhhHHHHHHHcc-----ccceEEEecCCCCCCCHHHHHHh
Q 004103 154 RGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHR-LKNHECALAKTISGY-----QIQRRLLLTGTPIQNSLQELWSL 227 (773)
Q Consensus 154 ~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~-lkn~~s~~~~~l~~~-----~~~~rllLTgTP~~n~~~el~~l 227 (773)
+-+-.++.++.-+......+.. .++|.||=+-+ .++. .....+..+ ....-|.||+|--..++.+++..
T Consensus 260 -~vp~~vv~~~~el~~ai~~l~~--~d~ILVDTaGrs~~D~--~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 260 -GVPLEVVYSPKELAEAIEALRD--CDVILVDTAGRSQYDK--EKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred -CCceEEecCHHHHHHHHHHhhc--CCEEEEeCCCCCccCH--HHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 1122444555555554444544 48999995443 3332 122222222 45667999999988999999888
Q ss_pred hccccCC
Q 004103 228 LNFLLPT 234 (773)
Q Consensus 228 L~~L~p~ 234 (773)
+..+..+
T Consensus 335 f~~~~i~ 341 (407)
T COG1419 335 FSLFPID 341 (407)
T ss_pred hccCCcc
Confidence 8877544
No 306
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.17 E-value=1.1 Score=53.80 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHh
Q 004103 78 ILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~ 101 (773)
|+..+.|.|||..|-+++..+...
T Consensus 44 LF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 44 LFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred EEECCCCCcHHHHHHHHHHHhccc
Confidence 789999999999998888777653
No 307
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.10 E-value=3.3 Score=44.69 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=19.7
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~ 99 (773)
+.++..+.|+|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999988877776653
No 308
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=90.01 E-value=1.2 Score=54.03 Aligned_cols=68 Identities=19% Similarity=0.098 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCC-cchHHHHHHHHhhc
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPK-AVLPNWINEFSTWA 128 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~-~~gp~LIVvP~-sll~qW~~E~~k~~ 128 (773)
.|.|-|.++|.. .....++....|+|||.+.+.-+++|+...+ ....+|+|+.+ .......+.+.+..
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 4 GLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 588999998852 2345677778999999999999999998643 34567888886 44455555565554
No 309
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=89.91 E-value=1.3 Score=48.65 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=15.8
Q ss_pred CeEEecCCCCCHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALI 95 (773)
Q Consensus 76 ~gILademGlGKTi~aiali 95 (773)
+.||..++|+|||..|-.++
T Consensus 50 SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred eeEEECCCCCCHHHHHHHHH
Confidence 45999999999997764444
No 310
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.75 E-value=0.22 Score=53.91 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=33.0
Q ss_pred hcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhh
Q 004103 71 FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 127 (773)
Q Consensus 71 ~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~ 127 (773)
+..+.|.+|..++|+|||+.|-+++... ..+++=|-=..+...|..|-++.
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akea------ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEA------GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHc------CCCcceeeccccchhhHHHHHHH
Confidence 3456667889999999999887776422 22444444445566776555543
No 311
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=89.55 E-value=6 Score=39.25 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
-++..+.|.|||..+..++..+...
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4779999999999998888887654
No 312
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.46 E-value=2.3 Score=50.36 Aligned_cols=41 Identities=17% Similarity=0.103 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCCC--e-EEecCCCCCHHHHHHHHHHHHHH
Q 004103 60 QLEGLQWMLSLFNNNLN--G-ILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~~--g-ILademGlGKTi~aiali~~l~~ 100 (773)
|...+..+...+.++.- . |+..+.|+|||..+..++..+..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45555555554444432 2 78999999999999988877753
No 313
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.28 E-value=3.2 Score=49.29 Aligned_cols=41 Identities=15% Similarity=0.039 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEecCCCCCHHHHHHHHHHHHHH
Q 004103 60 QLEGLQWMLSLFNNNL--N-GILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~--~-gILademGlGKTi~aiali~~l~~ 100 (773)
|...+..+...+.++. + -|+..+.|+|||..|..++..+..
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5555555555554432 3 368899999999999998887765
No 314
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=89.25 E-value=3.6 Score=45.21 Aligned_cols=47 Identities=21% Similarity=0.216 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHHHhhcCCCCe-EEecCCCCCHHHHHHHHHHHHHHhc
Q 004103 56 LRAYQLEGLQWMLSLFNNNLNG-ILADEMGLGKTIQTIALIAYLLENK 102 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~~~~~~~g-ILademGlGKTi~aiali~~l~~~~ 102 (773)
++|+|...-+.+.....+-.++ ++..+.|+|||..|..++..+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4678888777777653333345 5789999999999999998887653
No 315
>PRK09183 transposase/IS protein; Provisional
Probab=89.07 E-value=2.3 Score=44.95 Aligned_cols=29 Identities=34% Similarity=0.290 Sum_probs=23.4
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 72 NNNLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 72 ~~~~~gILademGlGKTi~aiali~~l~~ 100 (773)
..+.+.+|..++|+|||..+.++...+..
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 35777889999999999999888665544
No 316
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=89.03 E-value=2.8 Score=52.31 Aligned_cols=129 Identities=16% Similarity=0.127 Sum_probs=72.3
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCce
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~ 132 (773)
+..|.+-|.+++..++. .+.-.+|.-..|+|||.+. ..+..+++.. ...++.++|+.....=..+ -. ++.
T Consensus 344 g~~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e---~t-Gi~ 413 (988)
T PRK13889 344 GLVLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAML-GVAREAWEAA--GYEVRGAALSGIAAENLEG---GS-GIA 413 (988)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEecCcHHHHHHHhh---cc-Ccc
Confidence 45799999999998873 2234688899999999864 4444444432 2367888897554432221 00 100
Q ss_pred EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc-ccceEEE
Q 004103 133 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQRRLL 211 (773)
Q Consensus 133 v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~-~~~~rll 211 (773)
. ..+...+.. + ... ......-++|||||+-.+... .+...+... ....+++
T Consensus 414 --------a--~TI~sll~~----~----------~~~--~~~l~~~~vlIVDEASMv~~~--~m~~LL~~a~~~garvV 465 (988)
T PRK13889 414 --------S--RTIASLEHG----W----------GQG--RDLLTSRDVLVIDEAGMVGTR--QLERVLSHAADAGAKVV 465 (988)
T ss_pred --------h--hhHHHHHhh----h----------ccc--ccccccCcEEEEECcccCCHH--HHHHHHHhhhhCCCEEE
Confidence 0 000000000 0 000 001124579999999988432 333444333 5678899
Q ss_pred ecCCCCCC
Q 004103 212 LTGTPIQN 219 (773)
Q Consensus 212 LTgTP~~n 219 (773)
|.|=|-|-
T Consensus 466 LVGD~~QL 473 (988)
T PRK13889 466 LVGDPQQL 473 (988)
T ss_pred EECCHHHc
Confidence 99987543
No 317
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.97 E-value=9.9 Score=40.34 Aligned_cols=124 Identities=14% Similarity=0.148 Sum_probs=65.9
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC----cchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK----AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFF 151 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~----sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~ 151 (773)
...+..+.|+|||..+..++..+... ..++.+|.-. ..+.||......
T Consensus 77 ~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~~~~~------------------------- 128 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQDYVKT------------------------- 128 (270)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHHhhh-------------------------
Confidence 34678889999998877676665432 2244555432 345556533222
Q ss_pred hhcCCccEEE-cCHHHHHHhHHHHhh-cCeeEEEEccccccCChhhH---HHHHHHcccc-ceEEEecCCCCCCCHHHHH
Q 004103 152 SERGRFNVLI-THYDLIMRDRQYLKK-VQWIYMIVDEGHRLKNHECA---LAKTISGYQI-QRRLLLTGTPIQNSLQELW 225 (773)
Q Consensus 152 ~~~~~~~VvI-tTye~l~~~~~~l~~-~~~~~vIiDEaH~lkn~~s~---~~~~l~~~~~-~~rllLTgTP~~n~~~el~ 225 (773)
.++.+.. .+.+.+......+.. .++++||||-+=+.-..... +.+.+..... ...|.|+||--.+...+..
T Consensus 129 ---~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~ 205 (270)
T PRK06731 129 ---IGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 205 (270)
T ss_pred ---cCceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH
Confidence 1122222 233444333334433 36899999988665322222 2222222222 3456788987666666665
Q ss_pred Hhhcc
Q 004103 226 SLLNF 230 (773)
Q Consensus 226 ~lL~~ 230 (773)
..++-
T Consensus 206 ~~f~~ 210 (270)
T PRK06731 206 TNFKD 210 (270)
T ss_pred HHhCC
Confidence 55443
No 318
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=88.94 E-value=5.4 Score=45.36 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
.+++..+|+|||.++..++.++...
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc
Confidence 4678999999999998888877653
No 319
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=88.87 E-value=3.5 Score=42.32 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=16.4
Q ss_pred CeEEecCCCCCHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIA 96 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~ 96 (773)
+.|+..++|+|||..|-.++.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHh
Confidence 579999999999977654443
No 320
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=88.82 E-value=5.5 Score=47.92 Aligned_cols=120 Identities=20% Similarity=0.288 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhhc--CCcEEEEeecHHHHHHHHHHH-Hh------CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEE
Q 004103 367 FELLDRLLPKLRKS--GHRVLLFSQMTRLMDILEIYL-KL------NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMF 437 (773)
Q Consensus 367 ~~~L~~ll~~l~~~--g~kvLIFsq~~~~ld~L~~~L-~~------~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~ 437 (773)
+.++..+++.+... ..-|++|-.-=..+-.|..+| .. ..++++-.|......+..++.+.... .++-+
T Consensus 627 f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~---gv~ki 703 (1282)
T KOG0921|consen 627 FGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPE---GVTKI 703 (1282)
T ss_pred hHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccc---ccccc
Confidence 45555666555433 345777755333333333333 21 24456666665554444444333332 33346
Q ss_pred EEecccccccCCcccC-----------------CeeEEeCCCC-ChhhHHHHhhhhhhcCCcCeEEEEEEEeC
Q 004103 438 LLSTRAGGLGLNLQTA-----------------DTVIIFDSDW-NPQMDQQAEDRAHRIGQKKEVRVFVLVSV 492 (773)
Q Consensus 438 LlSt~agg~GLNL~~a-----------------d~VI~~D~~w-Np~~~~Qa~gRa~RiGQ~k~V~V~rLi~~ 492 (773)
|+||..+..-+.+-+. +..++|-.-| ++...+||.||++|. ++-..+++++.
T Consensus 704 i~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv---R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 704 ILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV---RPGFCFHLCSR 773 (1282)
T ss_pred ccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee---cccccccccHH
Confidence 6666666555544332 2233344445 677899999999884 45556666553
No 321
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.37 E-value=2.7 Score=52.06 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhh--cCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 60 QLEGLQWMLSLF--NNNLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 60 Q~~gv~~l~~~~--~~~~~gILademGlGKTi~aiali~~l~~ 100 (773)
|.+-+..++... ....|.||..++|+|||..+=+++..+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 555577776532 23346799999999999887666655543
No 322
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=88.32 E-value=5.6 Score=40.82 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=24.6
Q ss_pred CeeEEEEccccccCChhh---HHHHHHHcc-ccceEEEecC
Q 004103 178 QWIYMIVDEGHRLKNHEC---ALAKTISGY-QIQRRLLLTG 214 (773)
Q Consensus 178 ~~~~vIiDEaH~lkn~~s---~~~~~l~~~-~~~~rllLTg 214 (773)
..+++|||..|.+.+... .+...+..+ .....+++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 578999999999987542 344444333 3455677776
No 323
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=88.20 E-value=1.9 Score=51.71 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=87.5
Q ss_pred EEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHh
Q 004103 298 LKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKL 377 (773)
Q Consensus 298 v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l 377 (773)
....+++.|...+..+.... -+.+++|..+. ..|||.+....++.+.
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~-----------------------~~~~~~Ll~Gv----------TGSGKTEvYl~~i~~~ 241 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSL-----------------------GGFAPFLLDGV----------TGSGKTEVYLEAIAKV 241 (730)
T ss_pred cccccCHHHHHHHHHHHHhc-----------------------ccccceeEeCC----------CCCcHHHHHHHHHHHH
Confidence 34578888998888886541 13455666554 5799999999999999
Q ss_pred hhcCCcEEEEeecHHHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc
Q 004103 378 RKSGHRVLLFSQMTRLMDILEIYLKLN-DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 443 (773)
Q Consensus 378 ~~~g~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a 443 (773)
.+.|+.+||-..-......+...|..+ |.++..+|++.+..+|.....+..+|+.. ++|.|+.
T Consensus 242 L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~---vVIGtRS 305 (730)
T COG1198 242 LAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEAR---VVIGTRS 305 (730)
T ss_pred HHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCce---EEEEech
Confidence 999999999999887777777666554 78999999999999999999999988765 5556655
No 324
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.00 E-value=4.6 Score=45.41 Aligned_cols=124 Identities=13% Similarity=0.119 Sum_probs=62.8
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe-CC-cchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA-PK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERG 155 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv-P~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~ 155 (773)
++..++|+|||.++..++..+....+ ..++++. -. -....| .+..|+.. .
T Consensus 227 ~lvGptGvGKTTtaaKLA~~~~~~~G--~~V~Lit~Dt~R~aA~e--QLk~yAe~------------------------l 278 (432)
T PRK12724 227 FFVGPTGSGKTTSIAKLAAKYFLHMG--KSVSLYTTDNYRIAAIE--QLKRYADT------------------------M 278 (432)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEecccchhhhHHH--HHHHHHHh------------------------c
Confidence 56789999999999888875533221 2333333 21 222233 23333211 1
Q ss_pred CccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhh---HHHHHHHcc----ccceEEEecCCCCCCCHHHHHHhh
Q 004103 156 RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC---ALAKTISGY----QIQRRLLLTGTPIQNSLQELWSLL 228 (773)
Q Consensus 156 ~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s---~~~~~l~~~----~~~~rllLTgTP~~n~~~el~~lL 228 (773)
...+. ....+..-...+....+++||||=+-+.-.... .+...+... +....|.|+||--+..+.++...+
T Consensus 279 gvp~~--~~~~~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 279 GMPFY--PVKDIKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCee--ehHHHHHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 11111 111122222334445789999997665522121 222222222 335668899997666777666655
Q ss_pred ccc
Q 004103 229 NFL 231 (773)
Q Consensus 229 ~~L 231 (773)
..+
T Consensus 357 ~~~ 359 (432)
T PRK12724 357 ESL 359 (432)
T ss_pred cCC
Confidence 444
No 325
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=87.96 E-value=2.4 Score=48.36 Aligned_cols=25 Identities=32% Similarity=0.165 Sum_probs=21.1
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
.+|..+.|+|||..+-+++..+...
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~ 168 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRES 168 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 5788999999999988888877653
No 326
>PTZ00293 thymidine kinase; Provisional
Probab=87.93 E-value=4.8 Score=40.96 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=24.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 114 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~ 114 (773)
++..+|++|||...|-.+..+... ..+++++-|.
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~a---g~kv~~~kp~ 41 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYS---EKKCVVIKYS 41 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHc---CCceEEEEec
Confidence 678899999998776665544433 3478888885
No 327
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=87.69 E-value=3.8 Score=40.63 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=37.7
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhc-------CCCCCEEEEeCCcchHHHHHHHHhhc
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENK-------GVTGPHVIVAPKAVLPNWINEFSTWA 128 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~-------~~~gp~LIVvP~sll~qW~~E~~k~~ 128 (773)
+.-++++.+.|+|||..++.++..+.... ...+++|+|..-....++...+....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 33468999999999999999988877521 14568888888776777777776655
No 328
>PRK13342 recombination factor protein RarA; Reviewed
Probab=87.58 E-value=2.5 Score=47.88 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=17.6
Q ss_pred CeEEecCCCCCHHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~ 97 (773)
+.||..+.|+|||..+-+++..
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5688999999999887766543
No 329
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=87.36 E-value=1.7 Score=45.74 Aligned_cols=66 Identities=26% Similarity=0.345 Sum_probs=45.6
Q ss_pred chHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHH
Q 004103 56 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 124 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~ 124 (773)
+.-.++..+.-....+.++.+.++..++|.|||..|+|+...+. ..+ .+++++.-..++.+++..+
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEHHHHHHHHHHHH
Confidence 34455555555565667788889999999999999999999998 332 2455554445555555444
No 330
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.24 E-value=2.8 Score=44.27 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=17.1
Q ss_pred CCeEEecCCCCCHHHHHHHHHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~ 97 (773)
.+.+|..++|+|||..|--++..
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHH
Confidence 35689999999999777544443
No 331
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=87.23 E-value=3.1 Score=48.13 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=21.4
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~ 99 (773)
.+.+.+|.-++|+|||..+-+++..+.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 345668899999999998888777664
No 332
>PRK04132 replication factor C small subunit; Provisional
Probab=87.12 E-value=2.2 Score=52.22 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=34.0
Q ss_pred CeeEEEEccccccCC-hhhHHHHHHHccccceEEEecCCCCCCCHHHHHH
Q 004103 178 QWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 226 (773)
Q Consensus 178 ~~~~vIiDEaH~lkn-~~s~~~~~l~~~~~~~rllLTgTP~~n~~~el~~ 226 (773)
++.++||||+|+|.. ....+.+.+..++...+++|+.++...-+.-|.+
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 478999999999953 3344555666666778888888876555444443
No 333
>PRK06904 replicative DNA helicase; Validated
Probab=87.06 E-value=14 Score=42.64 Aligned_cols=127 Identities=10% Similarity=0.036 Sum_probs=68.7
Q ss_pred HHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEEe-cC---C
Q 004103 64 LQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVY-DG---R 139 (773)
Q Consensus 64 v~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~~-~g---~ 139 (773)
+..+..-+..+.=.|||.-+|.|||.-++.++...... ...|++++..--...++...+-....++....+ .| +
T Consensus 211 LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~--~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~~l~ 288 (472)
T PRK06904 211 LDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA--SEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNLD 288 (472)
T ss_pred HHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHhccCCCCC
Confidence 44444333333345899999999999988887766432 234888888877777776665433323222111 22 2
Q ss_pred hhHHHHHHHHHHhhcCCccEEE-----cCHHHHHHhHHHHhh-c-CeeEEEEccccccCC
Q 004103 140 PDERKAMREEFFSERGRFNVLI-----THYDLIMRDRQYLKK-V-QWIYMIVDEGHRLKN 192 (773)
Q Consensus 140 ~~~r~~~~~~~~~~~~~~~VvI-----tTye~l~~~~~~l~~-~-~~~~vIiDEaH~lkn 192 (773)
..+...+......-....++.| .|...+......+.. . ..++||||=-|.+..
T Consensus 289 ~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 289 QQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 2333222221110001223444 345555544433332 2 578999998887753
No 334
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.98 E-value=10 Score=44.02 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=20.0
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 76 NGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~~~ 101 (773)
..+|..++|.|||.++..++..+...
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 34567899999999988887766554
No 335
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=86.95 E-value=2.1 Score=47.13 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=20.1
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~ 100 (773)
-++..+.|+|||..+.+++..+..
T Consensus 39 ~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 39 YLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 378999999999998888877754
No 336
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=86.93 E-value=4.6 Score=47.81 Aligned_cols=141 Identities=14% Similarity=0.120 Sum_probs=78.5
Q ss_pred chHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHH----HH-----
Q 004103 56 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINE----FS----- 125 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E----~~----- 125 (773)
+.|+=..-|..++..|.++...++++ =|.|||..+..++.++....+ -.++|.+|. ++...-... ++
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~ 246 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFLE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHK 246 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhcC--CeEEEECCChhhHHHHHHHHHHHHHHhccc
Confidence 44555666888888888887766654 799999888766666665322 368888896 444443333 22
Q ss_pred hhcCCce-EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHH----------HHhHHHHhhcCeeEEEEccccccCChh
Q 004103 126 TWAPSIA-AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI----------MRDRQYLKKVQWIYMIVDEGHRLKNHE 194 (773)
Q Consensus 126 k~~p~~~-v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l----------~~~~~~l~~~~~~~vIiDEaH~lkn~~ 194 (773)
.|+|... +....|.. ..|.+...... .+..+......++++|||||+.+..
T Consensus 247 ~~fp~~~~iv~vkgg~----------------E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~-- 308 (752)
T PHA03333 247 PWFPEEFKIVTLKGTD----------------ENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNP-- 308 (752)
T ss_pred cccCCCceEEEeeCCe----------------eEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCH--
Confidence 5666442 22233221 11222211100 1112334556789999999999965
Q ss_pred hHHHHHHHcc-ccceEEEecCCCC
Q 004103 195 CALAKTISGY-QIQRRLLLTGTPI 217 (773)
Q Consensus 195 s~~~~~l~~~-~~~~rllLTgTP~ 217 (773)
..+...+=.+ .....+++.-||.
T Consensus 309 ~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 309 GALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHHHHccCCCceEEEeCCC
Confidence 3333333112 2345555555554
No 337
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=86.72 E-value=2.4 Score=41.79 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=37.0
Q ss_pred HHHHhhcCeeEEEEccccccCCh----hhHHHHHHHccccceEEEecCCCCCCCHHHHHHhhccc
Q 004103 171 RQYLKKVQWIYMIVDEGHRLKNH----ECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFL 231 (773)
Q Consensus 171 ~~~l~~~~~~~vIiDEaH~lkn~----~s~~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L 231 (773)
...+..-.+++||+||.-..-+. ...+...+..-+..--+.|||.-. +.+|..+-+++
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD~V 151 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC---PQDLLELADLV 151 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCcee
Confidence 44555668999999998654332 234555665556666799999744 45555444443
No 338
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=86.69 E-value=4.1 Score=40.70 Aligned_cols=108 Identities=15% Similarity=0.057 Sum_probs=57.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcCCc
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRF 157 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~ 157 (773)
++..+|.+|||...|-.+..+... ..+++|..|.. ...+..-.+..-.|.. ..
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~---g~~v~vfkp~i---------D~R~~~~~V~Sr~G~~---------------~~ 60 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEA---GMKVLVFKPAI---------DTRYGVGKVSSRIGLS---------------SE 60 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHc---CCeEEEEeccc---------ccccccceeeeccCCc---------------cc
Confidence 568899999998655555444433 34778888852 1111111122222211 11
Q ss_pred cEEEcCHHHHHHhHHHHhh-cCeeEEEEccccccCChhhHHHHHHHcccc--ceEEEecCC
Q 004103 158 NVLITHYDLIMRDRQYLKK-VQWIYMIVDEGHRLKNHECALAKTISGYQI--QRRLLLTGT 215 (773)
Q Consensus 158 ~VvItTye~l~~~~~~l~~-~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~--~~rllLTgT 215 (773)
-++|-+-..+......... ...+.|+|||||-+.. .+...+..+.. ...+++.|.
T Consensus 61 A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred ceecCChHHHHHHHHhcccCCCcCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 2334444444333333222 2268999999999854 44455544432 456666664
No 339
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=86.13 E-value=6.8 Score=39.24 Aligned_cols=137 Identities=12% Similarity=0.105 Sum_probs=71.2
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHH-HHHHH--hhcCCceEEEecCChh----HHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW-INEFS--TWAPSIAAVVYDGRPD----ERKA 145 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW-~~E~~--k~~p~~~v~~~~g~~~----~r~~ 145 (773)
.....++....|-|||..|++++......+ .+++||== +-..| ..|.. +..|++.+..+...-. ....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G---~~V~ivQF--lKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e 95 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHG---KKVGVVQF--IKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRER 95 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCC---CeEEEEEE--ecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHH
Confidence 345567889999999999999887776643 35555521 11112 12221 1123333332221100 0000
Q ss_pred HHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCCh----hhHHHHHHHccccceEEEecCCCCCCCH
Q 004103 146 MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNH----ECALAKTISGYQIQRRLLLTGTPIQNSL 221 (773)
Q Consensus 146 ~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~----~s~~~~~l~~~~~~~rllLTgTP~~n~~ 221 (773)
... .--+.+..-...+..-.+++||+||.=..-+. ...+...|..-+..--+.|||- +-+
T Consensus 96 ~~~-------------~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR---~~p 159 (191)
T PRK05986 96 DIA-------------AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGR---GAP 159 (191)
T ss_pred HHH-------------HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECC---CCC
Confidence 000 00012222344556678999999998665432 3345555555455667999997 444
Q ss_pred HHHHHhhcc
Q 004103 222 QELWSLLNF 230 (773)
Q Consensus 222 ~el~~lL~~ 230 (773)
.+|..+.++
T Consensus 160 ~~Lie~ADl 168 (191)
T PRK05986 160 RELIEAADL 168 (191)
T ss_pred HHHHHhCch
Confidence 555444443
No 340
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=86.11 E-value=7.1 Score=42.68 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHHhhcCCCCe-EEecCCCCCHHHHHHHHHHHHHHh
Q 004103 56 LRAYQLEGLQWMLSLFNNNLNG-ILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~~~~~~~g-ILademGlGKTi~aiali~~l~~~ 101 (773)
++|+|......+.....+-.++ ++..+.|+|||..|..++..+.-.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 4677877777777665444444 578999999999999998887753
No 341
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=85.98 E-value=6.6 Score=44.96 Aligned_cols=41 Identities=17% Similarity=0.033 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEecCCCCCHHHHHHHHHHHHHH
Q 004103 60 QLEGLQWMLSLFNNNL--N-GILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~--~-gILademGlGKTi~aiali~~l~~ 100 (773)
|...+.++......+. + -|+..+.|+|||..|.+++..+..
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4555666655544432 3 378899999999999999888765
No 342
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=85.92 E-value=1.7 Score=46.14 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=62.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh---cCCCCCEEEEeCC-cch-----HHHHHHHHhh--c--CCceEEEecCChhHH
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN---KGVTGPHVIVAPK-AVL-----PNWINEFSTW--A--PSIAAVVYDGRPDER 143 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~---~~~~gp~LIVvP~-sll-----~qW~~E~~k~--~--p~~~v~~~~g~~~~r 143 (773)
|++..+||+||+- ++..++.. .+....+++|+|. .++ .-|..++..- . |+-.++--+|+
T Consensus 90 ~~VYGPTG~GKSq----LlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t---- 161 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ----LLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGT---- 161 (369)
T ss_pred EEEECCCCCCHHH----HHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccc----
Confidence 5788999999993 34444332 2445578999996 443 4488777542 1 21112222221
Q ss_pred HHHHHHHHhhcCCccEEEcCHHHHHHhHH-----------HHhhcCeeEEEEccccccCChhhHHHHHHHcc
Q 004103 144 KAMREEFFSERGRFNVLITHYDLIMRDRQ-----------YLKKVQWIYMIVDEGHRLKNHECALAKTISGY 204 (773)
Q Consensus 144 ~~~~~~~~~~~~~~~VvItTye~l~~~~~-----------~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~ 204 (773)
-..+.+-+||+-+..+.. .-.+...-.||+|||=.-.......+....++
T Consensus 162 -----------~~P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAl 222 (369)
T PF02456_consen 162 -----------FRPKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHAL 222 (369)
T ss_pred -----------ccccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcC
Confidence 345678888887765421 22345677999999855333333344444333
No 343
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.76 E-value=4 Score=50.60 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhh--cCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 60 QLEGLQWMLSLF--NNNLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 60 Q~~gv~~l~~~~--~~~~~gILademGlGKTi~aiali~~l~~ 100 (773)
|..-+..++... ....+.||..++|+|||..+-+++..+..
T Consensus 183 r~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 444466666532 33456799999999999988777765543
No 344
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=85.65 E-value=3.8 Score=49.40 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=47.5
Q ss_pred chHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCC-cchHHHHHHHHhhc
Q 004103 56 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPK-AVLPNWINEFSTWA 128 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~-~~gp~LIVvP~-sll~qW~~E~~k~~ 128 (773)
|.|-|.+++.+ ...+.++-...|+|||.+.+.-+.+++...+ ....+|+|+.+ ....+-...+.+..
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889988753 2345677778999999999999999997533 33456777654 55555666665544
No 345
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.40 E-value=3.2 Score=45.50 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=30.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC-CcchHHHHHHHHhh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-KAVLPNWINEFSTW 127 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP-~sll~qW~~E~~k~ 127 (773)
.++..++|+|||+.|=|++... +.+.+=|. ..+.+.|.-|-++.
T Consensus 248 vLm~GPPGTGKTlLAKAvATEc-------~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 248 VLMVGPPGTGKTLLAKAVATEC-------GTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred eeeeCCCCCcHHHHHHHHHHhh-------cCeEEEechhhhhhhhccchHHH
Confidence 3678999999999988777543 34455444 46667787665543
No 346
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=85.36 E-value=20 Score=40.58 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=23.7
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 113 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP 113 (773)
+++...|+|||.++..++.++... + .++++|+-
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~-G--~kV~lV~~ 136 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRK-G--FKPCLVCA 136 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC-C--CCEEEEcC
Confidence 568899999999998888877643 2 24555543
No 347
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=85.28 E-value=1.5 Score=45.87 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=15.8
Q ss_pred CCCCeEEecCCCCCHHHHHHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIAL 94 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aial 94 (773)
.+..+++..+.|+|||..+-.+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I 36 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSI 36 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4566777888999999654333
No 348
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.16 E-value=4 Score=50.51 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=21.3
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~ 100 (773)
..|.||..++|+|||..+-+++..+..
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 446799999999999988777766543
No 349
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=85.06 E-value=9.8 Score=37.09 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=20.2
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHh
Q 004103 78 ILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~ 101 (773)
++..+.|+|||..+..++..+...
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC
Confidence 677899999999998888877654
No 350
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.01 E-value=4.4 Score=50.32 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhh--cCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 60 QLEGLQWMLSLF--NNNLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 60 Q~~gv~~l~~~~--~~~~~gILademGlGKTi~aiali~~l~~ 100 (773)
|.+-+..++... ....+.||..++|+|||..+-+++..+..
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 444566666543 23456789999999999888777665543
No 351
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=85.00 E-value=5.4 Score=50.23 Aligned_cols=127 Identities=17% Similarity=0.056 Sum_probs=71.4
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceE
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAA 133 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v 133 (773)
..|.+-|.+++..+.. .+.-++|....|+|||.+.-++.. +++.. ..+++.++|+.-..+= +..-. ++..
T Consensus 380 ~~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~l~~~~~-~~e~~--G~~V~g~ApTgkAA~~---L~e~~-Gi~a 449 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTMMKAARE-AWEAA--GYRVVGGALAGKAAEG---LEKEA-GIQS 449 (1102)
T ss_pred CCCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHHHHHHHH-HHHHc--CCeEEEEcCcHHHHHH---HHHhh-CCCe
Confidence 5799999999987752 334467888999999977655443 33332 2467888887444322 22111 1111
Q ss_pred EEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHH-Hh-HHHHhhcCeeEEEEccccccCChhhHHHHHHHcc-ccceEE
Q 004103 134 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIM-RD-RQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQRRL 210 (773)
Q Consensus 134 ~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~-~~-~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~-~~~~rl 210 (773)
. |...+. .. ......-.-++||||||..+.. ..+...+... ....++
T Consensus 450 ~----------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~--~~m~~Ll~~~~~~garv 499 (1102)
T PRK13826 450 R----------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS--RQMALFVEAVTRAGAKL 499 (1102)
T ss_pred e----------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCCH--HHHHHHHHHHHhcCCEE
Confidence 1 111110 00 0000011246999999998843 2233444444 367899
Q ss_pred EecCCCCCCC
Q 004103 211 LLTGTPIQNS 220 (773)
Q Consensus 211 lLTgTP~~n~ 220 (773)
+|-|-|-|-.
T Consensus 500 VLVGD~~QL~ 509 (1102)
T PRK13826 500 VLVGDPEQLQ 509 (1102)
T ss_pred EEECCHHHcC
Confidence 9999876543
No 352
>PRK11823 DNA repair protein RadA; Provisional
Probab=84.99 E-value=4 Score=46.68 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=34.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 127 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~ 127 (773)
.+|.-++|+|||..++.++..+... .+++|.|.-.....|......++
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ees~~qi~~ra~rl 130 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEESASQIKLRAERL 130 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccccHHHHHHHHHHc
Confidence 3789999999999998888776532 34788888766666665555443
No 353
>PRK14873 primosome assembly protein PriA; Provisional
Probab=84.90 E-value=4.2 Score=48.74 Aligned_cols=94 Identities=16% Similarity=0.104 Sum_probs=74.6
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC-C-CeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEe
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-D-FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 440 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~-g-~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlS 440 (773)
.|||.+.+.+++......|+.+||...-......+...|..+ | ..+..+|+..+..+|.........|... ++|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~---IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR---VVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc---EEEE
Confidence 589999999999999999999999999988888888877654 4 6799999999999999999998887765 6777
Q ss_pred cccccccCCcccCCeeEEeC
Q 004103 441 TRAGGLGLNLQTADTVIIFD 460 (773)
Q Consensus 441 t~agg~GLNL~~ad~VI~~D 460 (773)
|+++-. +-+.+...||+-|
T Consensus 247 tRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 247 TRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred cceeEE-eccCCCCEEEEEc
Confidence 776432 2233444555543
No 354
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=84.79 E-value=20 Score=39.04 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=23.2
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
.+..+.|+|||.++..++.++... .+.++++.
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~ 149 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAA 149 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 456899999999988888777543 34556554
No 355
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=84.56 E-value=8.2 Score=45.47 Aligned_cols=129 Identities=21% Similarity=0.215 Sum_probs=91.4
Q ss_pred EEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHH-HHHHH
Q 004103 296 VILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFEL-LDRLL 374 (773)
Q Consensus 296 ~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~-L~~ll 374 (773)
..+.+.+|..|+...+.|...-... ..++. |..++ -.|||--. +..++
T Consensus 257 ~~LPF~LT~aQ~~vi~EI~~Dl~~~---------~~M~R------------LlQGD----------VGSGKTvVA~laml 305 (677)
T COG1200 257 AALPFKLTNAQKRVIKEILADLASP---------VPMNR------------LLQGD----------VGSGKTVVALLAML 305 (677)
T ss_pred HhCCCCccHHHHHHHHHHHhhhcCc---------hhhHH------------HhccC----------cCCCHHHHHHHHHH
Confidence 3466889999999999987643211 01111 01111 14666433 33333
Q ss_pred HHhhhcCCcEEEEeecH----HHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc-ccccCC
Q 004103 375 PKLRKSGHRVLLFSQMT----RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA-GGLGLN 449 (773)
Q Consensus 375 ~~l~~~g~kvLIFsq~~----~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a-gg~GLN 449 (773)
. ....|..+.+....- ++.+-+..+|...|+.+..++|+++.++|.+++++..+|+.+ ++|.|.| .-..++
T Consensus 306 ~-ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---ivVGTHALiQd~V~ 381 (677)
T COG1200 306 A-AIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---IVVGTHALIQDKVE 381 (677)
T ss_pred H-HHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---EEEEcchhhhccee
Confidence 3 335677888887754 567778888888899999999999999999999999999988 7889988 566888
Q ss_pred cccCCeeEEe
Q 004103 450 LQTADTVIIF 459 (773)
Q Consensus 450 L~~ad~VI~~ 459 (773)
+++.-.||+=
T Consensus 382 F~~LgLVIiD 391 (677)
T COG1200 382 FHNLGLVIID 391 (677)
T ss_pred ecceeEEEEe
Confidence 8888877763
No 356
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=84.41 E-value=7.2 Score=41.14 Aligned_cols=50 Identities=14% Similarity=0.027 Sum_probs=34.1
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 124 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~ 124 (773)
.+.-.+++..+|+|||..++.++..+.... ..+++++.--....+....+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISLEEPVVRTARRL 78 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEcccCHHHHHHHH
Confidence 444568999999999999988887776542 24677777544444444444
No 357
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.34 E-value=2.4 Score=46.09 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=32.3
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l 98 (773)
.+.+.+.|..-+..++ .++.+.+++-+||+|||....+++...
T Consensus 125 ~gt~~~~~~ayL~~~i---e~~~siii~G~t~sGKTt~lnall~~I 167 (312)
T COG0630 125 YGTISPEQAAYLWLAI---EARKSIIICGGTASGKTTLLNALLDFI 167 (312)
T ss_pred cCCCCHHHHHHHHHHH---HcCCcEEEECCCCCCHHHHHHHHHHhC
Confidence 4677778777665554 478889999999999998776666443
No 358
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=84.28 E-value=8.1 Score=39.87 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=30.1
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 115 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~s 115 (773)
+.-.+|+..+|+|||..++.++....... ..+++++..-.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~E~ 52 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSLEM 52 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeCCC
Confidence 33358899999999999998888776652 34788888543
No 359
>PRK11054 helD DNA helicase IV; Provisional
Probab=83.94 E-value=2.4 Score=51.10 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=48.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCCcchHHHHHH-HHhh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKAVLPNWINE-FSTW 127 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~-~~gp~LIVvP~sll~qW~~E-~~k~ 127 (773)
..|.+-|.++|.. ...+.++....|+|||.+.++-++||+.... ....+|+++.+....+...+ +...
T Consensus 195 ~~L~~~Q~~av~~------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVVN------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHhC------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 4699999999852 2234566667999999999999999997653 23478999988655554333 4443
No 360
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=83.82 E-value=2.8 Score=43.58 Aligned_cols=96 Identities=17% Similarity=0.278 Sum_probs=54.4
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEE--eCCcch---------------------HHHHHHHHhhcCCceEEEe
Q 004103 80 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIV--APKAVL---------------------PNWINEFSTWAPSIAAVVY 136 (773)
Q Consensus 80 ademGlGKTi~aiali~~l~~~~~~~gp~LIV--vP~sll---------------------~qW~~E~~k~~p~~~v~~~ 136 (773)
.--=|.|||..+.+++..|...+ .++|+| .|.+++ ..|.....+...++.++-|
T Consensus 8 s~kGGvG~TTltAnLA~aL~~~G---~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~LPf 84 (243)
T PF06564_consen 8 SPKGGVGKTTLTANLAWALARLG---ESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDFLPF 84 (243)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCC---CcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEEEcC
Confidence 33458999999988887776643 366665 465544 2244444444556666666
Q ss_pred cCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHh-hcCeeEEEEcccc
Q 004103 137 DGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK-KVQWIYMIVDEGH 188 (773)
Q Consensus 137 ~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~-~~~~~~vIiDEaH 188 (773)
......... .+.-+......+......+. .-.|++||||=.+
T Consensus 85 G~l~~~~~~----------~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~ 127 (243)
T PF06564_consen 85 GQLTEAERE----------AFEQLAQDPQWLARALAALKALGPYDWILIDTPP 127 (243)
T ss_pred CCCCHHHHH----------HHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 543332211 11112233444555555555 4578899999554
No 361
>PRK10867 signal recognition particle protein; Provisional
Probab=83.79 E-value=12 Score=42.41 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHh
Q 004103 78 ILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~ 101 (773)
+++...|+|||.++.-++.++...
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHh
Confidence 678999999999999998888765
No 362
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=83.67 E-value=8.2 Score=39.99 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=27.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH---------hcCCCCCEEEEeCC
Q 004103 77 GILADEMGLGKTIQTIALIAYLLE---------NKGVTGPHVIVAPK 114 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~---------~~~~~gp~LIVvP~ 114 (773)
++|+.+.|+|||..++.++..+.. .....+++|++.--
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~E 50 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAE 50 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECC
Confidence 689999999999999888776542 11234678888743
No 363
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=83.62 E-value=8 Score=43.30 Aligned_cols=103 Identities=18% Similarity=0.246 Sum_probs=60.3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEEecCC-hhHHHHHHHHHHhhcCC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGR-PDERKAMREEFFSERGR 156 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~~~g~-~~~r~~~~~~~~~~~~~ 156 (773)
+++-=-|+|||.++.-++.|+... .. ++|+|+--.--.--.++++..+..+.+-+|... ..+.
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk~--~~-kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~P------------- 167 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKKK--GK-KVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDP------------- 167 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHHc--CC-ceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCH-------------
Confidence 567778999999999999888772 23 445555433333444555555544444444431 1111
Q ss_pred ccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc
Q 004103 157 FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY 204 (773)
Q Consensus 157 ~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~ 204 (773)
-+....-...+....+++||||=|-|+.- +..+...+..+
T Consensus 168 -------v~Iak~al~~ak~~~~DvvIvDTAGRl~i-de~Lm~El~~I 207 (451)
T COG0541 168 -------VEIAKAALEKAKEEGYDVVIVDTAGRLHI-DEELMDELKEI 207 (451)
T ss_pred -------HHHHHHHHHHHHHcCCCEEEEeCCCcccc-cHHHHHHHHHH
Confidence 12223334556666789999999888754 44444444433
No 364
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=83.42 E-value=1.9 Score=50.63 Aligned_cols=126 Identities=14% Similarity=0.144 Sum_probs=69.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHH----HHhhcCCceEEEecCChhHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINE----FSTWAPSIAAVVYDGRPDERKAMREEFF 151 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E----~~k~~p~~~v~~~~g~~~~r~~~~~~~~ 151 (773)
.+..-+==.|||....+++..++.... .-.+++++|. ++...-.+| +++|+|...+....|.. + ...+
T Consensus 257 tVflVPRR~GKTwivv~iI~~ll~s~~-Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~-----I-~i~f 329 (738)
T PHA03368 257 TVFLVPRRHGKTWFLVPLIALALATFR-GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGET-----I-SFSF 329 (738)
T ss_pred eEEEecccCCchhhHHHHHHHHHHhCC-CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcE-----E-EEEe
Confidence 466677789999988777776664321 2367888886 555444444 45677654443333311 0 0000
Q ss_pred hhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHH--HccccceEEEecCC
Q 004103 152 SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTI--SGYQIQRRLLLTGT 215 (773)
Q Consensus 152 ~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l--~~~~~~~rllLTgT 215 (773)
...++..+...|- .....++...++++||||||.++. ..+..++ ..-.....|.+|-|
T Consensus 330 ~nG~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~--~al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 330 PDGSRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRP--DAVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred cCCCccEEEEEec----cCCCCccCCcccEEEEechhhCCH--HHHHHHHHHHhccCccEEEEecC
Confidence 1001112333211 223446667899999999999974 3333333 12235566777655
No 365
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=83.27 E-value=13 Score=41.44 Aligned_cols=48 Identities=23% Similarity=0.193 Sum_probs=35.1
Q ss_pred CchHHHHHHHHHHHHhh---cCCCCeEEecCCCCCHHHHHHHHHHHHHHhc
Q 004103 55 ELRAYQLEGLQWMLSLF---NNNLNGILADEMGLGKTIQTIALIAYLLENK 102 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~---~~~~~gILademGlGKTi~aiali~~l~~~~ 102 (773)
.-|+-|+..+...+.-. ..+.|.++...+|+|||.++--++..+.+..
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 56788888776655432 2234578999999999999888887777653
No 366
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=83.13 E-value=98 Score=37.24 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=34.4
Q ss_pred CcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHH
Q 004103 382 HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGT 422 (773)
Q Consensus 382 ~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~ 422 (773)
..+.|+.........++..|...+++|..+.|+++--+|.+
T Consensus 350 ~d~aiL~R~n~~s~~~e~~l~~~~ipy~i~~gg~~f~~r~e 390 (655)
T COG0210 350 SDIAILYRTNAQSRLIEEALRAAGIPYRIVIGGTSFFERKE 390 (655)
T ss_pred hhEEEEEecCcchHHHHHHHHHcCCCeEEecCCcccccHHH
Confidence 45677777788899999999999999999988888777776
No 367
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=83.10 E-value=5.4 Score=43.35 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCCC---CeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 60 QLEGLQWMLSLFNNNL---NGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~---~gILademGlGKTi~aiali~~l~~~ 101 (773)
|-+++..+.....++. .-++..+.|.||+..|.+++.++...
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4555555655554443 33778999999999999999988764
No 368
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=83.07 E-value=6.7 Score=43.71 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=20.6
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 72 NNNLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 72 ~~~~~gILademGlGKTi~aiali~~l~~ 100 (773)
..+.++++..+.|.|||..+-.++.....
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 34556777788999999777665555544
No 369
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=83.01 E-value=1.3 Score=45.41 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=26.1
Q ss_pred CeeEEEEccccccCChhhHHHHHHHccccceEEEecCCCCCCCH
Q 004103 178 QWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSL 221 (773)
Q Consensus 178 ~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllLTgTP~~n~~ 221 (773)
..+++||||++.+-. .. +.- +........+.|-|=|.|-..
T Consensus 62 ~~~~liiDE~~~~~~-g~-l~~-l~~~~~~~~~~l~GDp~Q~~~ 102 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPP-GY-LLL-LLSLSPAKNVILFGDPLQIPY 102 (234)
T ss_pred cCCEEEEeccccCCh-HH-HHH-HHhhccCcceEEEECchhccC
Confidence 478999999998742 11 122 333334446777799987653
No 370
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=83.01 E-value=11 Score=46.91 Aligned_cols=97 Identities=19% Similarity=0.131 Sum_probs=68.6
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 438 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~L 438 (773)
.+||-......+-.....|.+++|.+..+..+......+.. .++++..++|.++..++..+++.+..+..+ ++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d---IV 558 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID---IL 558 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce---EE
Confidence 45665544433333334578999999999887776665543 477889999999999999999999887655 56
Q ss_pred Eecc-cccccCCcccCCeeEEeCCC
Q 004103 439 LSTR-AGGLGLNLQTADTVIIFDSD 462 (773)
Q Consensus 439 lSt~-agg~GLNL~~ad~VI~~D~~ 462 (773)
++|. .....+.+.....||+=+.+
T Consensus 559 IGTp~ll~~~v~f~~L~llVIDEah 583 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLIIDEEQ 583 (926)
T ss_pred EchHHHhhCCCCcccCCEEEeeccc
Confidence 6665 34456778888888875543
No 371
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.73 E-value=8.9 Score=41.51 Aligned_cols=124 Identities=22% Similarity=0.324 Sum_probs=67.3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcch-HHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcCC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL-PNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGR 156 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll-~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~ 156 (773)
++..--|+|||.+..-++.++...+ .++| ++-..+. .--.++++-|.....+-++.+... .+
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~~g---~~Vl-laA~DTFRAaAiEQL~~w~er~gv~vI~~~~G-------------~D 205 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQQG---KSVL-LAAGDTFRAAAIEQLEVWGERLGVPVISGKEG-------------AD 205 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHHCC---CeEE-EEecchHHHHHHHHHHHHHHHhCCeEEccCCC-------------CC
Confidence 4567899999977766666666542 2444 4444443 335666777775444444443210 00
Q ss_pred ccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChh------hHHHHHHHcc--ccceEEEe--cCCCCCCCHHHH
Q 004103 157 FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHE------CALAKTISGY--QIQRRLLL--TGTPIQNSLQEL 224 (773)
Q Consensus 157 ~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~------s~~~~~l~~~--~~~~rllL--TgTP~~n~~~el 224 (773)
+ --.-|+.+ ..-...++++||||=|-|+-|.. .+..+.+... .++|.++| =||-=||.+...
T Consensus 206 p--AaVafDAi----~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA 277 (340)
T COG0552 206 P--AAVAFDAI----QAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA 277 (340)
T ss_pred c--HHHHHHHH----HHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH
Confidence 0 00112332 22344578999999999996632 2333333222 23444444 477777776654
No 372
>CHL00206 ycf2 Ycf2; Provisional
Probab=82.71 E-value=3.4 Score=54.09 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=30.4
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 120 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW 120 (773)
.+.|.+|..++|+|||+.|=|++... .-|++-|....++..|
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es------~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS------YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc------CCceEEEEHHHHhhcc
Confidence 34556789999999999887777532 3377777666777665
No 373
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=82.71 E-value=7 Score=47.66 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=20.9
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~ 100 (773)
..+.||..+.|+|||..+-+++.....
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999988777655443
No 374
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=82.68 E-value=5.3 Score=40.92 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=37.1
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhc
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWA 128 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~ 128 (773)
.+++-++|+|||+.++-++....... ..++++|+-.....++.+.+..+.
T Consensus 22 ~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 22 VLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESSS-HHHHHHHHHTTT
T ss_pred EEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEecCCHHHHHHHHHHcC
Confidence 47889999999999998887665541 127888887777788888887764
No 375
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=82.58 E-value=2.6 Score=50.85 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=48.1
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCC-cchHHHHHHHHhhc
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPK-AVLPNWINEFSTWA 128 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~-~~gp~LIVvP~-sll~qW~~E~~k~~ 128 (773)
.|.|-|.++|.+ ..+..++....|+|||.+.+.-+++|+...+ ....+|+|+.+ .........+.+.+
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478899998853 2345566777999999999999999997533 34568888886 44444555554443
No 376
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=82.50 E-value=12 Score=42.37 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=20.6
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~ 100 (773)
.+++...|+|||.++..++.++..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~ 125 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKK 125 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 467899999999999998888754
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=82.49 E-value=20 Score=38.03 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=23.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
++....|.|||.++..++.++... ..++++|.
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~ 107 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAA 107 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEe
Confidence 456899999999998888877543 23555554
No 378
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=82.32 E-value=2.2 Score=42.36 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=31.9
Q ss_pred hcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHh
Q 004103 71 FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 126 (773)
Q Consensus 71 ~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k 126 (773)
..++.|.+|..++|+|||..|.+++..+...+ .+++++. ...+..+++.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~----~~~L~~~l~~ 92 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFIT----ASDLLDELKQ 92 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEE----HHHHHHHHHC
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEee----cCceeccccc
Confidence 34567778899999999999999998888742 2455553 3445555543
No 379
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=82.31 E-value=6.6 Score=41.99 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=20.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~ 101 (773)
.+++.++|+|||.++..++.++...
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3577899999999998888887654
No 380
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=82.23 E-value=17 Score=37.12 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=36.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhc
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWA 128 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~ 128 (773)
.+++.++|+|||..++.++...... ..+++++.......+-.+.+..+.
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLEEREERILGYAKSKG 67 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCHHHHHHHHHHcC
Confidence 3778899999999998887765543 358888888777777666666554
No 381
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.18 E-value=18 Score=43.23 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=25.0
Q ss_pred CeeEEEEccccccCCh-hhHHHHHHHccccceEEEecCCC
Q 004103 178 QWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTP 216 (773)
Q Consensus 178 ~~~~vIiDEaH~lkn~-~s~~~~~l~~~~~~~rllLTgTP 216 (773)
++.+|||||+|++... ...+.+.+...+...+++|+.|-
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~ 160 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 5789999999999531 22344444444555666676663
No 382
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=82.01 E-value=24 Score=34.31 Aligned_cols=129 Identities=16% Similarity=0.100 Sum_probs=67.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe--CCcchHHH-HHH--HHhhcCCceEEEecCCh----hHHHHHHH
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA--PKAVLPNW-INE--FSTWAPSIAAVVYDGRP----DERKAMRE 148 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv--P~sll~qW-~~E--~~k~~p~~~v~~~~g~~----~~r~~~~~ 148 (773)
.+.-..|.|||..|++++......+ .++++|= -.. | ..| +-+.+|++.+..+.... .+......
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra~~~g---~~v~~vQFlKg~----~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRALGHG---YRVGVVQFLKGG----WKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEEeCCC----CccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHH
Confidence 4556789999999998887766542 3555531 111 1 112 22223555544433211 00000000
Q ss_pred HHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCC----hhhHHHHHHHccccceEEEecCCCCCCCHHHH
Q 004103 149 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN----HECALAKTISGYQIQRRLLLTGTPIQNSLQEL 224 (773)
Q Consensus 149 ~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn----~~s~~~~~l~~~~~~~rllLTgTP~~n~~~el 224 (773)
.. -+.+..-...+..-.+++||+||.=..-+ ....+...+..-+...-++|||--. +.+|
T Consensus 79 ~a-------------~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~---p~~l 142 (159)
T cd00561 79 AA-------------AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA---PKEL 142 (159)
T ss_pred HH-------------HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC---CHHH
Confidence 00 01222223445566899999999866533 2335555665555666799999744 4444
Q ss_pred HHhhc
Q 004103 225 WSLLN 229 (773)
Q Consensus 225 ~~lL~ 229 (773)
..+.+
T Consensus 143 ~e~AD 147 (159)
T cd00561 143 IEAAD 147 (159)
T ss_pred HHhCc
Confidence 44433
No 383
>PRK10689 transcription-repair coupling factor; Provisional
Probab=81.62 E-value=15 Score=47.03 Aligned_cols=96 Identities=14% Similarity=0.053 Sum_probs=66.6
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 438 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~L 438 (773)
.+||-......+-.....|.+++|.+..+..+..+...+.. .++.+..++|..+.+++..+++....+..+ ++
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~d---IV 707 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKID---IL 707 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCC---EE
Confidence 45665543333322334688999999999887766665543 356788899999999999999988876665 55
Q ss_pred Eecc-cccccCCcccCCeeEEeCC
Q 004103 439 LSTR-AGGLGLNLQTADTVIIFDS 461 (773)
Q Consensus 439 lSt~-agg~GLNL~~ad~VI~~D~ 461 (773)
++|. .....+++.....||+=+.
T Consensus 708 VgTp~lL~~~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 708 IGTHKLLQSDVKWKDLGLLIVDEE 731 (1147)
T ss_pred EECHHHHhCCCCHhhCCEEEEech
Confidence 5664 4445567777888777443
No 384
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=81.44 E-value=8.5 Score=39.90 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=38.6
Q ss_pred HHHHHHHH-hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHh
Q 004103 62 EGLQWMLS-LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 126 (773)
Q Consensus 62 ~gv~~l~~-~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k 126 (773)
.++..++. -+..+...+++.++|+|||+.++-++...... ..++|+|.-.....+-.+.+..
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEeeCCHHHHHHHHHH
Confidence 34554442 12223335789999999999998887765543 3477888765555555444443
No 385
>PRK09165 replicative DNA helicase; Provisional
Probab=81.39 E-value=27 Score=40.52 Aligned_cols=114 Identities=12% Similarity=0.083 Sum_probs=62.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcC------------CCCCEEEEeCCcchHHHHHHHHhhcCCceEEE-ecC--Chh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKG------------VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVV-YDG--RPD 141 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~------------~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~-~~g--~~~ 141 (773)
.|+|..+|.|||..++.++........ ...+++++..--...++...+-....++.... ..| +..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~~~~l~~~ 299 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGKISEE 299 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHH
Confidence 588999999999999888776654321 13578888776666776665543322222111 122 122
Q ss_pred HHHHHHHHHHhhcCCccEEE-----cCHHHHHHhHHHH-hhcCeeEEEEccccccC
Q 004103 142 ERKAMREEFFSERGRFNVLI-----THYDLIMRDRQYL-KKVQWIYMIVDEGHRLK 191 (773)
Q Consensus 142 ~r~~~~~~~~~~~~~~~VvI-----tTye~l~~~~~~l-~~~~~~~vIiDEaH~lk 191 (773)
+...+..... ......+.| .|.+.+......+ .....++||||=.|.+.
T Consensus 300 e~~~l~~a~~-~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 300 DFEKLVDASQ-ELQKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIR 354 (497)
T ss_pred HHHHHHHHHH-HHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcc
Confidence 2222222111 112233443 2445554443333 34568899999877765
No 386
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=81.29 E-value=2.7 Score=48.88 Aligned_cols=125 Identities=16% Similarity=0.155 Sum_probs=67.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHH----HHHHHHhhcCCceEEEecCChhHHHHHHHHHHh
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPN----WINEFSTWAPSIAAVVYDGRPDERKAMREEFFS 152 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~q----W~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~ 152 (773)
+.--+=--|||...+++|+.++..-... .+..|+-. ++..- ....+.+|+|.-.++.-.|+.-.-. .
T Consensus 206 VFLVPRRHGKTWf~VpiIsllL~s~~gI-~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~~s-------~ 277 (668)
T PHA03372 206 VFLVPRRHGKTWFIIPIISFLLKNIIGI-SIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVISID-------H 277 (668)
T ss_pred EEEecccCCceehHHHHHHHHHHhhcCc-eEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEEEe-------c
Confidence 3334667899999999998887732221 56677764 33333 3444678998765433222100000 0
Q ss_pred hcCCccEEEcC-HHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccceEEEecCC
Q 004103 153 ERGRFNVLITH-YDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGT 215 (773)
Q Consensus 153 ~~~~~~VvItT-ye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllLTgT 215 (773)
+..+..++.++ + +.+.++...|++++|||||-++...-...--+..-+....+.+|-|
T Consensus 278 pg~Kst~~fasc~-----n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 278 RGAKSTALFASCY-----NTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred CCCcceeeehhhc-----cCccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCC
Confidence 00111222222 2 2345677899999999999996422111111133345556666654
No 387
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=81.20 E-value=3.7 Score=44.72 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=33.3
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~ 100 (773)
.+.+.+.|.+-+..++. .+.+.|++.+||+|||..+-+++.++..
T Consensus 126 ~g~~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 126 SKIMTEAQASVIRSAID---SRLNIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred cCCCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 35677777776666554 6677889999999999887777766543
No 388
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=81.10 E-value=2.7 Score=48.52 Aligned_cols=45 Identities=27% Similarity=0.492 Sum_probs=35.8
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcC---CCCCEEEEeCCcchHHHHH
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKG---VTGPHVIVAPKAVLPNWIN 122 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~---~~gp~LIVvP~sll~qW~~ 122 (773)
|+....|+|||.+|+-=++||+..++ ..+|+||+.|+.+......
T Consensus 230 VVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 230 VVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred EEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 66789999999999988888887643 3468999999988766543
No 389
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.89 E-value=25 Score=39.82 Aligned_cols=53 Identities=23% Similarity=0.209 Sum_probs=32.3
Q ss_pred CeeEEEEccccccCChhhHHHHHHHcc-----ccceEEEecCCCCCCCHHHHHHhhccc
Q 004103 178 QWIYMIVDEGHRLKNHECALAKTISGY-----QIQRRLLLTGTPIQNSLQELWSLLNFL 231 (773)
Q Consensus 178 ~~~~vIiDEaH~lkn~~s~~~~~l~~~-----~~~~rllLTgTP~~n~~~el~~lL~~L 231 (773)
..++++||.+=+..+ ...+...+..+ .....|.|++|--.+.+.++...+..+
T Consensus 269 ~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~ 326 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGH 326 (420)
T ss_pred CCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCC
Confidence 568899998744432 22233333333 235568899997777777776665544
No 390
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=80.80 E-value=15 Score=41.31 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=26.4
Q ss_pred CeeEEEEccccccCChh---hHHHHHHHcc-ccceEEEecC--CCC
Q 004103 178 QWIYMIVDEGHRLKNHE---CALAKTISGY-QIQRRLLLTG--TPI 217 (773)
Q Consensus 178 ~~~~vIiDEaH~lkn~~---s~~~~~l~~~-~~~~rllLTg--TP~ 217 (773)
..++++||..|.+.+.. -.+.-.+..+ .....|+||+ +|-
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~ 220 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPK 220 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCch
Confidence 56899999999997753 3334444333 3444888888 553
No 391
>PRK08760 replicative DNA helicase; Provisional
Probab=80.78 E-value=24 Score=40.70 Aligned_cols=125 Identities=11% Similarity=0.088 Sum_probs=68.1
Q ss_pred HHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEE-ecCC--h
Q 004103 64 LQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVV-YDGR--P 140 (773)
Q Consensus 64 v~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~-~~g~--~ 140 (773)
+..++.-+..+.=.|||..+|.|||..++.++....... ..|++++..-....++...+......+.... ..|. .
T Consensus 219 LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~ 296 (476)
T PRK08760 219 FDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALED 296 (476)
T ss_pred HHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEeccCCHHHHHHHHHHhhCCCcHHHHhcCCCCH
Confidence 333443233333348899999999999998887765331 2478888887777888777655433222111 1222 2
Q ss_pred hHHHHHHHHHHhhcCCccEEEc-----CHHHHHHhHHHH-hhcCeeEEEEccccccC
Q 004103 141 DERKAMREEFFSERGRFNVLIT-----HYDLIMRDRQYL-KKVQWIYMIVDEGHRLK 191 (773)
Q Consensus 141 ~~r~~~~~~~~~~~~~~~VvIt-----Tye~l~~~~~~l-~~~~~~~vIiDEaH~lk 191 (773)
.+...+.... .......+.|. |.+.+......+ .....++||||=.|.+.
T Consensus 297 ~e~~~~~~a~-~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 297 EDWARVTGAI-KMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHH-HHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcC
Confidence 2222221111 11122334332 345554443333 34567899999777774
No 392
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=80.70 E-value=1.9 Score=42.70 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=24.7
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 114 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~ 114 (773)
++..+|++|||...|..+..+... ..+++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~---~~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIA---GKKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T-EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhC---CCeEEEEEec
Confidence 566899999999887777665443 2467888885
No 393
>PRK08840 replicative DNA helicase; Provisional
Probab=80.44 E-value=33 Score=39.41 Aligned_cols=126 Identities=11% Similarity=0.057 Sum_probs=65.2
Q ss_pred HHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEEe-cC--Ch
Q 004103 64 LQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVY-DG--RP 140 (773)
Q Consensus 64 v~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~~-~g--~~ 140 (773)
+..++.-+..+.=.|+|.-+|.|||.-++.++...... ...|+++...--...++...+-....++....+ .| +.
T Consensus 207 LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~--~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~ 284 (464)
T PRK08840 207 LNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD--QDKPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDD 284 (464)
T ss_pred HHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh--CCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHHhcCCCCH
Confidence 44444333333335899999999999998777766432 234888888776666665554332222221111 12 22
Q ss_pred hHHHHHHHHHHhhcCCccEEE-----cCHHHHHHhHHHHhh-c-CeeEEEEccccccC
Q 004103 141 DERKAMREEFFSERGRFNVLI-----THYDLIMRDRQYLKK-V-QWIYMIVDEGHRLK 191 (773)
Q Consensus 141 ~~r~~~~~~~~~~~~~~~VvI-----tTye~l~~~~~~l~~-~-~~~~vIiDEaH~lk 191 (773)
.+...+......-.....+.| .|...+......+.. . ..++||||=-|.+.
T Consensus 285 ~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 285 EDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 232222211100001223333 234444443333332 2 47899999888885
No 394
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=80.37 E-value=11 Score=39.00 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=33.5
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFS 125 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~ 125 (773)
+.-.++..+.|+|||..++.++..+.... .+++.++......+-.+.+.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e~~~~~~~~~~~ 72 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQLTTTEFIKQMM 72 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHH
Confidence 34457899999999999888888766532 46777776554444444443
No 395
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=80.02 E-value=6.2 Score=44.28 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=25.3
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcch
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 117 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll 117 (773)
+.+.+|..+.|+|||..|-+++..+ ..+++.+....++
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~l~ 202 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELV 202 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHHHh
Confidence 4456889999999999887776543 1255555444433
No 396
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=80.01 E-value=34 Score=38.20 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=27.8
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC-C---cchHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-K---AVLPNWIN 122 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP-~---sll~qW~~ 122 (773)
.+++.+.|+|||.++..++.++...+ .++.+|+- + ..+.||..
T Consensus 209 i~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDtyR~gAveQLk~ 255 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTFRSGAVEQFQG 255 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCccCccHHHHHHH
Confidence 36788999999999888887765532 24444442 2 22566654
No 397
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=79.92 E-value=10 Score=41.05 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHH
Q 004103 78 ILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~ 100 (773)
++..+-|.|||..|.+++..+..
T Consensus 30 Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 30 IIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred EeECCCCCCHHHHHHHHHHHHcC
Confidence 78999999999999888877754
No 398
>PRK05748 replicative DNA helicase; Provisional
Probab=79.89 E-value=25 Score=40.26 Aligned_cols=126 Identities=14% Similarity=0.083 Sum_probs=66.1
Q ss_pred HHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEE-EecCC--
Q 004103 63 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV-VYDGR-- 139 (773)
Q Consensus 63 gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~-~~~g~-- 139 (773)
++..++.-+..+.-.+++..+|.|||.-++.++....... ..+++++..--...+....+-.-...+... +..|.
T Consensus 192 ~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~--g~~v~~fSlEms~~~l~~R~l~~~~~v~~~~i~~~~l~ 269 (448)
T PRK05748 192 DLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKT--DKNVAIFSLEMGAESLVMRMLCAEGNIDAQRLRTGQLT 269 (448)
T ss_pred HHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhC--CCeEEEEeCCCCHHHHHHHHHHHhcCCCHHHhhcCCCC
Confidence 3444443233333358899999999999998887764321 347888877666666655553222222211 11222
Q ss_pred hhHHHHHHHHHHhhcCCccEEE-----cCHHHHHHhHHHHh-hc-CeeEEEEccccccC
Q 004103 140 PDERKAMREEFFSERGRFNVLI-----THYDLIMRDRQYLK-KV-QWIYMIVDEGHRLK 191 (773)
Q Consensus 140 ~~~r~~~~~~~~~~~~~~~VvI-----tTye~l~~~~~~l~-~~-~~~~vIiDEaH~lk 191 (773)
..+...+.... .......+.| .|.+.+......+. .. +.++||||=-|.+.
T Consensus 270 ~~e~~~~~~a~-~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 270 DDDWPKLTIAM-GSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHH-HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 12221111111 1112233443 24455544433333 33 57899999888775
No 399
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=79.46 E-value=11 Score=42.12 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=19.4
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 72 NNNLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 72 ~~~~~gILademGlGKTi~aiali~~l 98 (773)
..+..+++..+.|+|||..+-.++..+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 345567888899999997765555444
No 400
>PRK08939 primosomal protein DnaI; Reviewed
Probab=79.44 E-value=18 Score=39.11 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=23.2
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~ 101 (773)
+.+.+|..++|+|||..+.|++..+...
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~ 183 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKK 183 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3445788999999999999999988854
No 401
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=79.43 E-value=5.4 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.154 Sum_probs=18.2
Q ss_pred CCeEEecCCCCCHHHHHHHHHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~ 97 (773)
.+.||..+.|+|||..+-++...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999887666643
No 402
>PRK12608 transcription termination factor Rho; Provisional
Probab=79.05 E-value=7.3 Score=43.16 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 61 LEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 61 ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~ 101 (773)
..++..++- ...+.+++|..+.|+|||..+..++..+...
T Consensus 121 ~RvID~l~P-iGkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 121 MRVVDLVAP-IGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred Hhhhhheee-cCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 345554442 3456678999999999998887777766554
No 403
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=79.04 E-value=25 Score=37.73 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHHHHhhcCCC--CeEEecCCCCCHHHHHHHHHHHHHHhc
Q 004103 55 ELRAYQLEGLQWMLSLFNNNL--NGILADEMGLGKTIQTIALIAYLLENK 102 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~--~gILademGlGKTi~aiali~~l~~~~ 102 (773)
+|...|-.++..+.....++. +++|... |.||+..|..++..+....
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 455667777777766654543 3555444 5899999988888887643
No 404
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.99 E-value=21 Score=39.51 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhcCCC---CeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 60 QLEGLQWMLSLFNNNL---NGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~---~gILademGlGKTi~aiali~~l~~ 100 (773)
|...+..+.....++. .-++..+.|+|||..+-+++..+..
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444444444443332 4578999999999888877665543
No 405
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=78.87 E-value=5.1 Score=46.28 Aligned_cols=130 Identities=16% Similarity=0.157 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhhc-CCC----CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCC-EEEEeCC-cchHHHHHHHHhhc--
Q 004103 58 AYQLEGLQWMLSLFN-NNL----NGILADEMGLGKTIQTIALIAYLLENKGVTGP-HVIVAPK-AVLPNWINEFSTWA-- 128 (773)
Q Consensus 58 pyQ~~gv~~l~~~~~-~~~----~gILademGlGKTi~aiali~~l~~~~~~~gp-~LIVvP~-sll~qW~~E~~k~~-- 128 (773)
|+|...+..+.-... .+. .++|.-+=|-|||..+.+++.|.+-..+..++ ++++++. .....-..++.+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 678876665553311 111 24677788999999988877776654444444 5555665 22222333333333
Q ss_pred -CCceEEEecCChhHHHHHHHHHHhhcCCccEEEcC----HHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHH
Q 004103 129 -PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITH----YDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTI 201 (773)
Q Consensus 129 -p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItT----ye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l 201 (773)
|.+.... ....... ..-.|.... +..+..+...+......++|+||+|.+++. .+..++
T Consensus 81 ~~~l~~~~-----------~~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~l 144 (477)
T PF03354_consen 81 SPELRKRK-----------KPKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDD--ELYDAL 144 (477)
T ss_pred Chhhccch-----------hhhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCH--HHHHHH
Confidence 2211100 0000000 011111111 111123344556678899999999999863 244444
No 406
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.61 E-value=9.2 Score=42.07 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=52.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEEecC-ChhHHHHHHHHHHhhcCC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDG-RPDERKAMREEFFSERGR 156 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~~~g-~~~~r~~~~~~~~~~~~~ 156 (773)
+++.=-|+|||.+..-++.|+... ..++.||.+.+. -.--..+++.|+....+-+|.. +..+..
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kkk--G~K~~LvcaDTF-RagAfDQLkqnA~k~~iP~ygsyte~dpv------------ 169 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKKK--GYKVALVCADTF-RAGAFDQLKQNATKARVPFYGSYTEADPV------------ 169 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHhc--CCceeEEeeccc-ccchHHHHHHHhHhhCCeeEecccccchH------------
Confidence 456778999998877777776553 244556555542 2222333444443333333321 111110
Q ss_pred ccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhH
Q 004103 157 FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECA 196 (773)
Q Consensus 157 ~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~ 196 (773)
.....-...+++-+|++||+|=+-|.+-..+.
T Consensus 170 --------~ia~egv~~fKke~fdvIIvDTSGRh~qe~sL 201 (483)
T KOG0780|consen 170 --------KIASEGVDRFKKENFDVIIVDTSGRHKQEASL 201 (483)
T ss_pred --------HHHHHHHHHHHhcCCcEEEEeCCCchhhhHHH
Confidence 11122245567778999999988887654443
No 407
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=78.51 E-value=30 Score=39.32 Aligned_cols=112 Identities=9% Similarity=0.077 Sum_probs=59.1
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEE-ecCC--hhHHHHHHHHHHhh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVV-YDGR--PDERKAMREEFFSE 153 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~-~~g~--~~~r~~~~~~~~~~ 153 (773)
.+++..+|.|||..++.++....... ..+++++..-....+....+.....++.... ..|. ..+...+.... ..
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlEm~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a~-~~ 274 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLEMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSAA-GK 274 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHHH-HH
Confidence 48899999999999998887765432 2478888776555554444433222222111 1221 11221111111 11
Q ss_pred cCCccEEE-----cCHHHHHHhHHH-HhhcCeeEEEEccccccC
Q 004103 154 RGRFNVLI-----THYDLIMRDRQY-LKKVQWIYMIVDEGHRLK 191 (773)
Q Consensus 154 ~~~~~VvI-----tTye~l~~~~~~-l~~~~~~~vIiDEaH~lk 191 (773)
.....+.| .|.+.+...... ......++||||=.|.+.
T Consensus 275 l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 275 LSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMS 318 (434)
T ss_pred HhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcC
Confidence 12223333 244444443333 334568999999877774
No 408
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=78.40 E-value=3.5 Score=48.21 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=39.9
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHH-HHHHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLE 100 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai-ali~~l~~ 100 (773)
.++++.|++-++-+.+-...+.-||+-.+||+|||+..| +.+.||..
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 589999999999998888899999999999999999965 44555544
No 409
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=78.32 E-value=3.9 Score=47.13 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhcCCC---CeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 60 QLEGLQWMLSLFNNNL---NGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~---~gILademGlGKTi~aiali~~l~~~ 101 (773)
|...+..|...+.++. .-++..+=|+|||.+|=-++..+-..
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 4444444444333333 23788999999998876666555443
No 410
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=78.17 E-value=12 Score=41.59 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=63.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcCCc
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRF 157 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~ 157 (773)
++.-++|.||+..-+-+++.+.... ++|.|+=-.-+.||+-...+..- ...
T Consensus 97 LIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGEES~~QiklRA~RL~~-------------------------~~~ 147 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGEESLQQIKLRADRLGL-------------------------PTN 147 (456)
T ss_pred EEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCCcCHHHHHHHHHHhCC-------------------------Ccc
Confidence 6789999999987777777666542 89999999889999888877641 113
Q ss_pred cEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCC
Q 004103 158 NVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN 192 (773)
Q Consensus 158 ~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn 192 (773)
++.+.....+..-...+...+++++|||=.+.+-+
T Consensus 148 ~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s 182 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYS 182 (456)
T ss_pred ceEEehhcCHHHHHHHHHhcCCCEEEEeccceeec
Confidence 35555555555555667778899999998888744
No 411
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=78.16 E-value=51 Score=37.34 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=58.9
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEE-ecCC--hhHHHHHHHHHHh
Q 004103 76 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVV-YDGR--PDERKAMREEFFS 152 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~-~~g~--~~~r~~~~~~~~~ 152 (773)
=.+++..+|.|||..++.++..+... ...|++++..-....+....+-.-..++.... ..|. ..+...+.... .
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~-~ 272 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALR--EGKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAV-D 272 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHH-H
Confidence 34899999999999999888766532 23488888765555555444322222222111 1111 12222221111 1
Q ss_pred hcCCccEEE-----cCHHHHHHhHHHHh-hc-CeeEEEEccccccCC
Q 004103 153 ERGRFNVLI-----THYDLIMRDRQYLK-KV-QWIYMIVDEGHRLKN 192 (773)
Q Consensus 153 ~~~~~~VvI-----tTye~l~~~~~~l~-~~-~~~~vIiDEaH~lkn 192 (773)
......+.| .|.+.+......+. .. ..++||||=.|.+..
T Consensus 273 ~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 273 RLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 112223333 23444444333332 22 588999998777753
No 412
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=77.83 E-value=15 Score=37.91 Aligned_cols=48 Identities=8% Similarity=0.237 Sum_probs=34.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 127 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~ 127 (773)
.+++.++|+|||+.+..++...... ..+++++.=.....+....+..+
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCCCHHHHHHHHHHC
Confidence 4778999999999998887765543 34777777666666666666554
No 413
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=77.80 E-value=7.6 Score=44.72 Aligned_cols=169 Identities=16% Similarity=0.149 Sum_probs=87.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCC------eEEecCCCCCHHHHHHHHHHH--HHHhcCCCCCEEEEeCC-cchHHHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLN------GILADEMGLGKTIQTIALIAY--LLENKGVTGPHVIVAPK-AVLPNWINEF 124 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~------gILademGlGKTi~aiali~~--l~~~~~~~gp~LIVvP~-sll~qW~~E~ 124 (773)
..|-|||...+.-+.-.+..+.+ +++--+=|=|||..+.+++.+ +... .....+.|++|+ ....+--.++
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhhHHH
Confidence 57999999998877766655554 377788899999876555444 3333 334467888886 2223322222
Q ss_pred HhhcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCH------HHHHHhHHHHhhcCeeEEEEccccccCChhhHHH
Q 004103 125 STWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY------DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALA 198 (773)
Q Consensus 125 ~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTy------e~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~ 198 (773)
..-.-... .-+..... ....+.|+.- ..+..+.......+...+|+||-|...+....++
T Consensus 139 r~mv~~~~--------~l~~~~~~------q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~~~~ 204 (546)
T COG4626 139 RDMVKRDD--------DLRDLCNV------QTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQEDMYS 204 (546)
T ss_pred HHHHHhCc--------chhhhhcc------ccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHHHHH
Confidence 21110000 00000000 1111111111 1122344556677889999999999988763333
Q ss_pred HHHHcc---ccceEEEec--CCCCCCCHHHHHHhhccccCCCCC
Q 004103 199 KTISGY---QIQRRLLLT--GTPIQNSLQELWSLLNFLLPTIFN 237 (773)
Q Consensus 199 ~~l~~~---~~~~rllLT--gTP~~n~~~el~~lL~~L~p~~~~ 237 (773)
.+...+ +....+.+| |-|...-..+.+....-+..+...
T Consensus 205 ~~~~g~~ar~~~l~~~ITT~g~~~~g~~~q~~~y~k~vl~g~~~ 248 (546)
T COG4626 205 EAKGGLGARPEGLVVYITTSGDPPAGVFKQKLQYAKDVLDGKIK 248 (546)
T ss_pred HHHhhhccCcCceEEEEecCCCCCccHHHHHHHHHHHHhcCCcC
Confidence 333333 223334443 334444455555544444333333
No 414
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=77.67 E-value=18 Score=41.74 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=19.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHh
Q 004103 78 ILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~ 101 (773)
.|..++|.|||.++..++.++...
T Consensus 260 ~LvGpnGvGKTTTiaKLA~~~~~~ 283 (484)
T PRK06995 260 ALMGPTGVGKTTTTAKLAARCVMR 283 (484)
T ss_pred EEECCCCccHHHHHHHHHHHHHHh
Confidence 467899999999888777776544
No 415
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=77.56 E-value=6.9 Score=43.43 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=18.9
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~ 97 (773)
+.+.+|..+.|+|||..+-+++..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 345688999999999888777654
No 416
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=77.49 E-value=13 Score=41.72 Aligned_cols=129 Identities=9% Similarity=0.015 Sum_probs=62.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC--cchHHHHHHHHhhcCCceE---EEecCChhHHHHHHHHHHh
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK--AVLPNWINEFSTWAPSIAA---VVYDGRPDERKAMREEFFS 152 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~--sll~qW~~E~~k~~p~~~v---~~~~g~~~~r~~~~~~~~~ 152 (773)
++....|+|||..++..+............+||+-|. ++-.+-..++....+...+ .....++-. +..
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~-------i~~ 77 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSME-------IKI 77 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccE-------EEe
Confidence 5677899999998764444433332123567777785 3333444444332221110 000010000 000
Q ss_pred hcCCccEEEcCHHHHHHhHHHHhhc-CeeEEEEccccccCChhhHHHHHHHccc---cceEEEecCCCCC
Q 004103 153 ERGRFNVLITHYDLIMRDRQYLKKV-QWIYMIVDEGHRLKNHECALAKTISGYQ---IQRRLLLTGTPIQ 218 (773)
Q Consensus 153 ~~~~~~VvItTye~l~~~~~~l~~~-~~~~vIiDEaH~lkn~~s~~~~~l~~~~---~~~rllLTgTP~~ 218 (773)
....-.|++..- ..+...+... .++++++|||..+.. ....+++.+++ ...++++|.||-.
T Consensus 78 ~~~g~~i~f~g~---~d~~~~ik~~~~~~~~~idEa~~~~~--~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 78 LNTGKKFIFKGL---NDKPNKLKSGAGIAIIWFEEASQLTF--EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred cCCCeEEEeecc---cCChhHhhCcceeeeehhhhhhhcCH--HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 000112333222 1223334443 358999999999842 34444444443 2235999999954
No 417
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=77.36 E-value=6.2 Score=41.65 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 57 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
.|+....+..++.....+.+.+|..++|+|||..|-++...+ ..|++.+.
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 345556666666666678888999999999999987776532 23666664
No 418
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=77.31 E-value=5.8 Score=43.24 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=31.0
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~ 99 (773)
+.+.+.|.+.+..++. .+.+.+++.++|+|||..+-+++.++.
T Consensus 131 g~~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 131 GIMTAAQREAIIAAVR---AHRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred CCCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 4455667666655553 677889999999999977767776554
No 419
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=76.96 E-value=9.2 Score=43.81 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=35.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhh
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 127 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~ 127 (773)
+|+-++|+|||..++.++..+... .+++|.|.......|......++
T Consensus 98 lI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~EEs~~qi~~ra~rl 144 (454)
T TIGR00416 98 LIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGEESLQQIKMRAIRL 144 (454)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECcCCHHHHHHHHHHc
Confidence 789999999999998887776553 24788888776677766555443
No 420
>PRK07004 replicative DNA helicase; Provisional
Probab=76.93 E-value=32 Score=39.55 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=65.3
Q ss_pred HHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEE-EecCC--h
Q 004103 64 LQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV-VYDGR--P 140 (773)
Q Consensus 64 v~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~-~~~g~--~ 140 (773)
+..++.-+..+.=.|+|..+|+|||.-++.++.+.... ...|++++..--...+....+-.-...+... +..|. .
T Consensus 203 LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~--~~~~v~~fSlEM~~~ql~~R~la~~~~v~~~~i~~g~l~~ 280 (460)
T PRK07004 203 LDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE--YGLPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTD 280 (460)
T ss_pred hcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHH--cCCeEEEEeCCCCHHHHHHHHHHhhcCCCHHHHhcCCCCH
Confidence 33343323333334889999999999999888776532 2347888877666666655543221122111 11222 2
Q ss_pred hHHHHHHHHHHhhcCCccEEE-----cCHHHHHHhHHHHhh-c-CeeEEEEccccccC
Q 004103 141 DERKAMREEFFSERGRFNVLI-----THYDLIMRDRQYLKK-V-QWIYMIVDEGHRLK 191 (773)
Q Consensus 141 ~~r~~~~~~~~~~~~~~~VvI-----tTye~l~~~~~~l~~-~-~~~~vIiDEaH~lk 191 (773)
.+...+.... ....+..+.| .|...+......+.. . ..++||||=-|.+.
T Consensus 281 ~e~~~~~~a~-~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 281 EDWPKLTHAV-QKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHH-HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 2222222211 1112334444 344445444444433 2 46899999877775
No 421
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.85 E-value=72 Score=36.73 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=58.9
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccC-------CcccC
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL-------NLQTA 453 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GL-------NL~~a 453 (773)
+..+||.+..+..+.-....|...|++...+.|..+..++..++.....+..+ ++++++....... .+...
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~--il~~TPe~l~~~~~~~~~l~~~~~i 128 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIK--LLYVTPEKCSASNRLLQTLEERKGI 128 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCC--EEEECHHHHcCchhHHHHHHhcCCc
Confidence 45789999999888777778888999999999999999999998888765543 5566655433222 34456
Q ss_pred CeeEEeCCC
Q 004103 454 DTVIIFDSD 462 (773)
Q Consensus 454 d~VI~~D~~ 462 (773)
+.||+=+.+
T Consensus 129 ~~iViDEaH 137 (470)
T TIGR00614 129 TLIAVDEAH 137 (470)
T ss_pred CEEEEeCCc
Confidence 777775544
No 422
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=76.67 E-value=24 Score=34.33 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=62.5
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEE----------EecCChhHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV----------VYDGRPDERK 144 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~----------~~~g~~~~r~ 144 (773)
....+...+|+|||..+.-++..|.+.. ..--=|++|..- +.=+++ ++.++ .+.+.. +.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR-----~gGkR~--GF~Ivdl~tg~~~~la~~~~~--~~ 74 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVR-----EGGKRI--GFKIVDLATGEEGILARVGFS--RP 74 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeee-----cCCeEe--eeEEEEccCCceEEEEEcCCC--Cc
Confidence 3456788999999988877777777652 111124444211 000000 12222 222221 11
Q ss_pred HHHHHHHhhcCCccEEEcCHHHHHHhHHHHhh--cCeeEEEEccccccCChhhHHHHHHHc-cccceEEE
Q 004103 145 AMREEFFSERGRFNVLITHYDLIMRDRQYLKK--VQWIYMIVDEGHRLKNHECALAKTISG-YQIQRRLL 211 (773)
Q Consensus 145 ~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~--~~~~~vIiDEaH~lkn~~s~~~~~l~~-~~~~~rll 211 (773)
..++|-|.+-..+.+... .+.+ -.-|++||||.--|-....++..++.. +++...++
T Consensus 75 --------rvGkY~V~v~~le~i~~~--al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpli 134 (179)
T COG1618 75 --------RVGKYGVNVEGLEEIAIP--ALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLI 134 (179)
T ss_pred --------ccceEEeeHHHHHHHhHH--HHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEE
Confidence 125666666666644332 2222 236899999999887767777777743 45555433
No 423
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=76.51 E-value=23 Score=37.22 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=26.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 113 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP 113 (773)
.+++-++|+|||..++.++...... ..+++++.-
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis~ 72 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASR---GNPVLFVTV 72 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEe
Confidence 3789999999999998887766543 347787773
No 424
>PRK10263 DNA translocase FtsK; Provisional
Probab=76.48 E-value=10 Score=48.06 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=29.7
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCC-CCEEEEeCCc
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIVAPKA 115 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~-gp~LIVvP~s 115 (773)
..+.+++..+|+|||...-++|..+....... -.+++|=|+.
T Consensus 1010 ~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1010 MPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 35779999999999999888887766543222 2455666764
No 425
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=76.44 E-value=4.8 Score=45.24 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=24.9
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 116 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sl 116 (773)
+.+.+|..+.|+|||..+-+++..+ ..+++.+.+..+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l 215 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEF 215 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHH
Confidence 4556889999999999886666532 235555555433
No 426
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=76.31 E-value=5.4 Score=44.79 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=33.6
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 126 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k 126 (773)
-+|+-+.|.|||+.+.+++..... .+.=|.|.+|...|..|-++
T Consensus 189 lLLfGPpgtGKtmL~~aiAsE~~a------tff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 189 LLLFGPPGTGKTMLAKAIATESGA------TFFNISASSLTSKYVGESEK 232 (428)
T ss_pred hheecCCCCchHHHHHHHHhhhcc------eEeeccHHHhhhhccChHHH
Confidence 368999999999999888875432 56778888888888655543
No 427
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=76.27 E-value=16 Score=37.74 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe--CCcchHHHHHH
Q 004103 82 EMGLGKTIQTIALIAYLLENKGVTGPHVIVA--PKAVLPNWINE 123 (773)
Q Consensus 82 emGlGKTi~aiali~~l~~~~~~~gp~LIVv--P~sll~qW~~E 123 (773)
-=|.|||.+++.++.++...+ .+++||= |...+..|...
T Consensus 10 KGGvGKTT~a~nLA~~la~~G---~~VlliD~DpQ~s~~~w~~~ 50 (231)
T PRK13849 10 KGGAGKTTALMGLCAALASDG---KRVALFEADENRPLTRWKEN 50 (231)
T ss_pred CCCccHHHHHHHHHHHHHhCC---CcEEEEeCCCCCCHHHHHHh
Confidence 348999999999988887642 2555552 66667788653
No 428
>PRK08506 replicative DNA helicase; Provisional
Probab=76.15 E-value=32 Score=39.70 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=61.1
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEE-ecC--ChhHHHHHHHHHHh
Q 004103 76 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVV-YDG--RPDERKAMREEFFS 152 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~-~~g--~~~~r~~~~~~~~~ 152 (773)
=.|+|..+|.|||..++.++...... ..+++++..--...+....+-....++.... ..| +..+...+.....
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~---g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~- 269 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQ---DKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACD- 269 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhc---CCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHH-
Confidence 34889999999999999888876532 3478888776666666555433222221111 112 1222222221111
Q ss_pred hcCCccEEE-----cCHHHHHHhHHHHhh-c-CeeEEEEccccccC
Q 004103 153 ERGRFNVLI-----THYDLIMRDRQYLKK-V-QWIYMIVDEGHRLK 191 (773)
Q Consensus 153 ~~~~~~VvI-----tTye~l~~~~~~l~~-~-~~~~vIiDEaH~lk 191 (773)
......+.| .|.+.+......+.. . ..++||||=-|.+.
T Consensus 270 ~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 270 ELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 112223443 245555554444433 2 47899999887775
No 429
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=76.10 E-value=15 Score=48.11 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=40.7
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc-CCCCCEEEEeCCcchH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPKAVLP 118 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~-~~~gp~LIVvP~sll~ 118 (773)
..|.+-|.+++..++.. .+.-.+|.-..|+|||.+.-+++..+.... .....++.++|+.-..
T Consensus 834 ~~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa 897 (1623)
T PRK14712 834 EKLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAV 897 (1623)
T ss_pred cccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHH
Confidence 37999999999887741 123468888999999988644443332211 1223577788975443
No 430
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=76.05 E-value=12 Score=40.67 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=34.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCCCEEEE-e-CCcchHH-HHHHH----HhhcCCceEEEecCCh
Q 004103 81 DEMGLGKTIQTIALIAYLLENKGVTGPHVIV-A-PKAVLPN-WINEF----STWAPSIAAVVYDGRP 140 (773)
Q Consensus 81 demGlGKTi~aiali~~l~~~~~~~gp~LIV-v-P~sll~q-W~~E~----~k~~p~~~v~~~~g~~ 140 (773)
.-=|.|||.+|+|++.++.+.+ .+ +|+| + |.+-+.+ ...++ .+-.|++.+.-++-..
T Consensus 9 GKGGVGKTT~aaA~A~~lA~~g--~k-vLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~ 72 (322)
T COG0003 9 GKGGVGKTTIAAATAVKLAESG--KK-VLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEK 72 (322)
T ss_pred cCCcccHHHHHHHHHHHHHHcC--Cc-EEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHHH
Confidence 3458999999999888888764 33 5555 3 6554444 22222 3344566666655443
No 431
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=75.96 E-value=22 Score=43.20 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=59.8
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC-Cc---chHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhh
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-KA---VLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSE 153 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP-~s---ll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~ 153 (773)
.|..++|.|||.++.-++..+....+.. .+.+|.- .. ...||..--... ++.+
T Consensus 189 ~lVGpnGvGKTTTiaKLA~~~~~~~G~k-kV~lit~Dt~RigA~eQL~~~a~~~--gvpv-------------------- 245 (767)
T PRK14723 189 ALVGPTGVGKTTTTAKLAARCVAREGAD-QLALLTTDSFRIGALEQLRIYGRIL--GVPV-------------------- 245 (767)
T ss_pred EEECCCCCcHHHHHHHHHhhHHHHcCCC-eEEEecCcccchHHHHHHHHHHHhC--CCCc--------------------
Confidence 5789999999988777776664332222 3333332 11 223332211111 1111
Q ss_pred cCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc-----ccceEEEecCCCCCCCHHHHHHhh
Q 004103 154 RGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-----QIQRRLLLTGTPIQNSLQELWSLL 228 (773)
Q Consensus 154 ~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~-----~~~~rllLTgTP~~n~~~el~~lL 228 (773)
.++.+.+.+......+. ..++||||=+=+.-+. ..+...+..+ +....|.|++|.-...+.++..-+
T Consensus 246 -----~~~~~~~~l~~al~~~~--~~D~VLIDTAGRs~~d-~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 246 -----HAVKDAADLRFALAALG--DKHLVLIDTVGMSQRD-RNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred -----cccCCHHHHHHHHHHhc--CCCEEEEeCCCCCccC-HHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 12223443333333333 4578999987765432 2233333322 345567888886555555554333
No 432
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=75.71 E-value=13 Score=40.64 Aligned_cols=124 Identities=21% Similarity=0.218 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHHHhcC--------C----CCCEEEEeCCcchHHHHHH---HHhhcCCceEEEecCChhHHHHHHH
Q 004103 84 GLGKTIQTIALIAYLLENKG--------V----TGPHVIVAPKAVLPNWINE---FSTWAPSIAAVVYDGRPDERKAMRE 148 (773)
Q Consensus 84 GlGKTi~aiali~~l~~~~~--------~----~gp~LIVvP~sll~qW~~E---~~k~~p~~~v~~~~g~~~~r~~~~~ 148 (773)
|+|||=.+++++.++...+- . .+..++|.|.+....--.| +.+.+| +.+++-......-..+.+
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~-~~V~V~~dR~~~~~~~~~ 125 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP-VPVIVGPDRVAAARAALK 125 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC-CcEEEeCcHHHHHHHHHH
Confidence 99999999999999988621 1 1226777777744443333 556666 555554443332222222
Q ss_pred HHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCC----hhhHHHHHHHccccceEEEecCCCC
Q 004103 149 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN----HECALAKTISGYQIQRRLLLTGTPI 217 (773)
Q Consensus 149 ~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn----~~s~~~~~l~~~~~~~rllLTgTP~ 217 (773)
. ..++|+|.-=..= ...| ..++++|++|-.+-+.| +...+..-+..+...-.+++|+.+-
T Consensus 126 ~-----~~~dviilDDGfQ---h~~L-~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l~rAD~vi~~~~~~ 189 (326)
T PF02606_consen 126 E-----FPADVIILDDGFQ---HRRL-KRDLDIVLVDADRPFGNGFLLPAGPLREPLSALKRADAVIVTGCDA 189 (326)
T ss_pred H-----CCCCEEEEcCCcc---cccc-cCCcEEEEEeCCCCCcCCccCCCCcccCChhHhCcccEEEEcCCCc
Confidence 1 2366766532210 0011 12567788887655554 2333444444444444455566654
No 433
>PRK08006 replicative DNA helicase; Provisional
Probab=75.29 E-value=33 Score=39.57 Aligned_cols=60 Identities=15% Similarity=0.014 Sum_probs=39.8
Q ss_pred HHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHH
Q 004103 64 LQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFS 125 (773)
Q Consensus 64 v~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~ 125 (773)
+..++.-+..+.=.|||..+|.|||.-++.++...... ...|+++...--...++...+-
T Consensus 214 LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~--~g~~V~~fSlEM~~~ql~~Rll 273 (471)
T PRK08006 214 LNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML--QDKPVLIFSLEMPGEQIMMRML 273 (471)
T ss_pred HHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHHH
Confidence 44444333333345899999999999998888776532 1347888877666666655544
No 434
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=75.16 E-value=20 Score=37.59 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=61.6
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHH-HHhhcCCceEE-EecCC--hhHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINE-FSTWAPSIAAV-VYDGR--PDERKAMREEFF 151 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E-~~k~~p~~~v~-~~~g~--~~~r~~~~~~~~ 151 (773)
=.+|+..+|.|||..++.++..+....+ .|++++..-....+.... +.... ++... +..|. ..+...+....
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~SlEm~~~~l~~R~la~~s-~v~~~~i~~g~l~~~e~~~~~~~~- 96 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSLEMSEEELAARLLARLS-GVPYNKIRSGDLSDEEFERLQAAA- 96 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEESSS-HHHHHHHHHHHHH-TSTHHHHHCCGCHHHHHHHHHHHH-
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHhh-cchhhhhhccccCHHHHHHHHHHH-
Confidence 3589999999999999999988877532 588999887555553333 22222 22111 11121 22222222111
Q ss_pred hhcCCccEEE-----cCHHHHHHhHHHHhh--cCeeEEEEccccccCC
Q 004103 152 SERGRFNVLI-----THYDLIMRDRQYLKK--VQWIYMIVDEGHRLKN 192 (773)
Q Consensus 152 ~~~~~~~VvI-----tTye~l~~~~~~l~~--~~~~~vIiDEaH~lkn 192 (773)
.......+.| .|.+.+......+.. .+.++||||=.|.+..
T Consensus 97 ~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 97 EKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred HHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 1112222333 244555544443333 5788999998888865
No 435
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=74.95 E-value=5.3 Score=47.30 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=54.8
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc---CCCCCEEEEeCC-cchHHHHHHHHh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK---GVTGPHVIVAPK-AVLPNWINEFST 126 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~---~~~gp~LIVvP~-sll~qW~~E~~k 126 (773)
..|..-|+.+.+.++. ..-.|+..++|+|||++++-++..++.+. ...-|+||||=+ +.++|...-+-.
T Consensus 377 ~ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eeecHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 3677789999988873 44468999999999999999998888764 334599999987 888888666653
No 436
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=74.87 E-value=13 Score=45.48 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=18.0
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~ 97 (773)
+.+.+|..+.|+|||..+-+++..
T Consensus 212 ~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHH
Confidence 345678999999999877665543
No 437
>CHL00176 ftsH cell division protein; Validated
Probab=74.80 E-value=17 Score=43.48 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=18.5
Q ss_pred CCeEEecCCCCCHHHHHHHHHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~ 97 (773)
.+.+|..++|+|||..|=+++..
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35688999999999988777653
No 438
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=74.51 E-value=11 Score=40.91 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=30.0
Q ss_pred eeEEEEccccccCChhhHHHHHHHccccceEEEecCCCCCCCHH
Q 004103 179 WIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQ 222 (773)
Q Consensus 179 ~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllLTgTP~~n~~~ 222 (773)
=.+||+||||+- .-.+.-..|.++-...++.+||.+.|-++.
T Consensus 244 dAfVIlDEaQNt--T~~QmKMfLTRiGf~skmvItGD~tQiDLp 285 (348)
T COG1702 244 DAFVILDEAQNT--TVGQMKMFLTRIGFESKMVITGDITQIDLP 285 (348)
T ss_pred CeEEEEeccccc--chhhhceeeeeecCCceEEEEcCcccccCC
Confidence 358999999972 222333445777788889999999876644
No 439
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=74.47 E-value=3.5 Score=47.83 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHHHHhhc--------CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHh
Q 004103 55 ELRAYQLEGLQWMLSLFN--------NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 126 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~--------~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k 126 (773)
..+....+++.|.+.... ...+.||+.+.|+|||+.|-+++.++ ..+++-|-...++..|..|.++
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHHH
Confidence 467777888888776533 33355889999999999988777632 2366655555888889877765
Q ss_pred h
Q 004103 127 W 127 (773)
Q Consensus 127 ~ 127 (773)
-
T Consensus 323 ~ 323 (494)
T COG0464 323 N 323 (494)
T ss_pred H
Confidence 4
No 440
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=73.75 E-value=21 Score=47.35 Aligned_cols=63 Identities=17% Similarity=0.095 Sum_probs=41.2
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc-CCCCCEEEEeCCcchH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPKAVLP 118 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~-~~~gp~LIVvP~sll~ 118 (773)
..|.+-|.+++..++.. ...-.+|....|+|||.+.-+++..+.... .....++.++|+.-..
T Consensus 966 ~~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 966 EGLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHH
Confidence 47999999999988741 123457888999999987655554433211 1123567788985443
No 441
>PRK09087 hypothetical protein; Validated
Probab=73.56 E-value=19 Score=37.04 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=25.6
Q ss_pred eEEEEccccccCChhhHHHHHHHcc-ccceEEEecCC
Q 004103 180 IYMIVDEGHRLKNHECALAKTISGY-QIQRRLLLTGT 215 (773)
Q Consensus 180 ~~vIiDEaH~lkn~~s~~~~~l~~~-~~~~rllLTgT 215 (773)
++|+||+.|.+......+...+..+ .....+++|++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~ 125 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSR 125 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECC
Confidence 4799999999865555666666444 44667888887
No 442
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=73.52 E-value=11 Score=38.21 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=22.2
Q ss_pred eEEEEccccccC-Ch--hhHHHHHHHcc------ccceEEEecCCC
Q 004103 180 IYMIVDEGHRLK-NH--ECALAKTISGY------QIQRRLLLTGTP 216 (773)
Q Consensus 180 ~~vIiDEaH~lk-n~--~s~~~~~l~~~------~~~~rllLTgTP 216 (773)
-+|||||+|.+. +. ...+...+..+ .....+.++|+.
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 689999999998 22 23333333222 334557778875
No 443
>PF12846 AAA_10: AAA-like domain
Probab=73.30 E-value=11 Score=39.98 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=31.8
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 122 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~ 122 (773)
.+.++...+|+|||..+..++..+...+ .+++|+=|..-...|..
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g---~~~~i~D~~g~~~~~~~ 46 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRG---PRVVIFDPKGDYSPLAR 46 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcC---CCEEEEcCCchHHHHHH
Confidence 4678899999999988887777776653 35666666644444433
No 444
>PHA00350 putative assembly protein
Probab=73.11 E-value=5.9 Score=44.32 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=13.6
Q ss_pred EEecCCCCCHHHHHHHH
Q 004103 78 ILADEMGLGKTIQTIAL 94 (773)
Q Consensus 78 ILademGlGKTi~aial 94 (773)
++-..+|+|||+-|+..
T Consensus 5 l~tG~pGSGKT~~aV~~ 21 (399)
T PHA00350 5 AIVGRPGSYKSYEAVVY 21 (399)
T ss_pred EEecCCCCchhHHHHHH
Confidence 45567899999999873
No 445
>PF05729 NACHT: NACHT domain
Probab=73.00 E-value=12 Score=35.45 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=22.3
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCC
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVT 105 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~ 105 (773)
.+|..+.|+|||..+-.++..+.......
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~ 31 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPP 31 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCccc
Confidence 36788999999999888887777765433
No 446
>PF13479 AAA_24: AAA domain
Probab=72.93 E-value=9.3 Score=38.92 Aligned_cols=31 Identities=13% Similarity=0.241 Sum_probs=21.6
Q ss_pred EEEcCHHHHHHhHHHH--hhcCeeEEEEccccc
Q 004103 159 VLITHYDLIMRDRQYL--KKVQWIYMIVDEGHR 189 (773)
Q Consensus 159 VvItTye~l~~~~~~l--~~~~~~~vIiDEaH~ 189 (773)
+-|.+++.+......+ ....++.||||-+..
T Consensus 47 i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 47 IPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 4566888887765555 235899999996543
No 447
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=72.68 E-value=8.8 Score=44.57 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=18.4
Q ss_pred CCeEEecCCCCCHHHHHHHHHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~ 97 (773)
.+.+|..++|+|||..+=+++..
T Consensus 89 ~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 35688999999999988777643
No 448
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.67 E-value=32 Score=41.05 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=29.0
Q ss_pred CCCcCCCCchHHHHHHHHHHHHhhc---CCCC-eEEecCCCCCHHHHHHHHHHH
Q 004103 48 PTLLQGGELRAYQLEGLQWMLSLFN---NNLN-GILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 48 P~~l~~~~LrpyQ~~gv~~l~~~~~---~~~~-gILademGlGKTi~aiali~~ 97 (773)
|..+...-..++++.-|..++.... .... .+|..++|+|||.++-.++..
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4444444455566665654443221 1122 578999999999877655543
No 449
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=72.39 E-value=18 Score=48.89 Aligned_cols=62 Identities=16% Similarity=0.076 Sum_probs=39.8
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCCcch
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKAVL 117 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~-~~gp~LIVvP~sll 117 (773)
..|.+-|.+++..++.. .+.-.++.-..|+|||.+..+++..+.+... ....++.++|+.-.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~A 1080 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIST--KDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEA 1080 (1960)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 47999999999887641 1233467789999999887544333322211 12357778897443
No 450
>PRK05636 replicative DNA helicase; Provisional
Probab=72.17 E-value=28 Score=40.43 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=31.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 124 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~ 124 (773)
.||+..+|.|||..++.++....... ..+++++..--...++...+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~--g~~v~~fSlEMs~~ql~~R~ 313 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKH--NKASVIFSLEMSKSEIVMRL 313 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEeeCCHHHHHHHH
Confidence 48899999999999988876654322 24778886655555554443
No 451
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=72.08 E-value=5.3 Score=48.76 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=27.9
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 120 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW 120 (773)
+.+.+|..++|+|||..+-+++..+ ..+++.|-+..++..|
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEILSKW 527 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHhhcc
Confidence 3445788999999998887776543 2366666665555544
No 452
>PHA02542 41 41 helicase; Provisional
Probab=71.76 E-value=25 Score=40.57 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=37.7
Q ss_pred HHHHHHH-HhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHH
Q 004103 62 EGLQWML-SLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 124 (773)
Q Consensus 62 ~gv~~l~-~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~ 124 (773)
..+..++ .-+..+.=.|+|..+|.|||..++.++...... ..++|++.----..++...+
T Consensus 177 ~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~---g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 177 EILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQ---GYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred HHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhc---CCcEEEEeccCCHHHHHHHH
Confidence 3455554 223233335889999999999999888777532 34778776444444544433
No 453
>PRK05595 replicative DNA helicase; Provisional
Probab=71.31 E-value=22 Score=40.64 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=39.8
Q ss_pred HHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHh
Q 004103 63 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 126 (773)
Q Consensus 63 gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k 126 (773)
.+..++.-+..+.=.|+|..+|.|||..++.++....... ..+++++..-....++...+-.
T Consensus 190 ~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~--g~~vl~fSlEms~~~l~~R~~a 251 (444)
T PRK05595 190 ELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALRE--GKSVAIFSLEMSKEQLAYKLLC 251 (444)
T ss_pred HHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHH
Confidence 3444443233333348899999999999998887654322 2478888776666666655433
No 454
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=71.29 E-value=1.1e+02 Score=30.21 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=46.6
Q ss_pred cCCcEEEEeecHHHHHHHH----HHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-c----c-cccCC
Q 004103 380 SGHRVLLFSQMTRLMDILE----IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-A----G-GLGLN 449 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~----~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-a----g-g~GLN 449 (773)
.+.++||.+.....+..+. .+....++.+..++|+.+..+....+. .+.+ ++++|. . . ..-++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---iiv~T~~~l~~~l~~~~~~ 140 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPH---IVVATPGRLLDLLERGKLD 140 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCC---EEEEChHHHHHHHHcCCCC
Confidence 3568999999876655544 444445888999999998766654333 2333 455552 1 1 12256
Q ss_pred cccCCeeEEeCCC
Q 004103 450 LQTADTVIIFDSD 462 (773)
Q Consensus 450 L~~ad~VI~~D~~ 462 (773)
+...+.+|+=+.+
T Consensus 141 ~~~l~~lIvDE~h 153 (203)
T cd00268 141 LSKVKYLVLDEAD 153 (203)
T ss_pred hhhCCEEEEeChH
Confidence 6777777764444
No 455
>PRK04328 hypothetical protein; Provisional
Probab=70.86 E-value=22 Score=37.20 Aligned_cols=47 Identities=21% Similarity=0.156 Sum_probs=31.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHh
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 126 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k 126 (773)
.+++.++|+|||+.++-++...... ..++++|.-.....+-.+.+..
T Consensus 26 ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis~ee~~~~i~~~~~~ 72 (249)
T PRK04328 26 VLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVALEEHPVQVRRNMRQ 72 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEEeeCCHHHHHHHHHH
Confidence 4779999999999998887765443 2367777644444444444333
No 456
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=70.66 E-value=11 Score=45.31 Aligned_cols=120 Identities=19% Similarity=0.180 Sum_probs=62.2
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-----------cchHHHHHHHHhhcCCceEE-------
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-----------AVLPNWINEFSTWAPSIAAV------- 134 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-----------sll~qW~~E~~k~~p~~~v~------- 134 (773)
-+++.||..++|+|||+.|-|++.. ..-|++-|.=. +.+..-.....+..|.+-.+
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiAGE------AgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~ 416 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIAGE------AGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVG 416 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHhcc------cCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEeccccccc
Confidence 3567899999999999999888732 12255433322 22222222222222221110
Q ss_pred ------EecCChhHHHHHHHHHHhhcCCc-----cEEEcCHHHH-HHhHHHHhhcCeeEEEEccccccCChhhHHH
Q 004103 135 ------VYDGRPDERKAMREEFFSERGRF-----NVLITHYDLI-MRDRQYLKKVQWIYMIVDEGHRLKNHECALA 198 (773)
Q Consensus 135 ------~~~g~~~~r~~~~~~~~~~~~~~-----~VvItTye~l-~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~ 198 (773)
...|...++....+++......| -|++.+-... ..|...++.-+|+..|.+.--.++...+-+.
T Consensus 417 ~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~ 492 (774)
T KOG0731|consen 417 RKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILK 492 (774)
T ss_pred ccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHH
Confidence 12345566666665554332222 2333332222 2245566666888888887776665444333
No 457
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=70.56 E-value=10 Score=40.99 Aligned_cols=43 Identities=26% Similarity=0.188 Sum_probs=29.1
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~ 100 (773)
.+.+.|.+-+..++ ..+.+.+++.+||+|||..+-+++..+..
T Consensus 116 ~~~~~~~~~L~~~v---~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 116 IMTAAQRDVLREAV---LARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCCHHHHHHHHHHH---HcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 34444554444444 46677899999999999887777655543
No 458
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=70.04 E-value=5.5 Score=43.96 Aligned_cols=45 Identities=13% Similarity=0.009 Sum_probs=31.2
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 124 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~ 124 (773)
+.+.+|.-+.|+|||+++=+++..+- -++++|....+...|.-|-
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg------~~~i~vsa~eL~sk~vGEs 192 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMG------IEPIVMSAGELESENAGEP 192 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcC------CCeEEEEHHHhhcCcCCcH
Confidence 34456789999999999887776541 2556666667777775443
No 459
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=70.03 E-value=35 Score=43.94 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=43.8
Q ss_pred hcCCcEEEEeecHHHHHHHHHHHH----hCCCeEE---EEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 379 KSGHRVLLFSQMTRLMDILEIYLK----LNDFKFL---RLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 379 ~~g~kvLIFsq~~~~ld~L~~~L~----~~g~~~~---~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
..+.++||.+..+..+..+...+. ..|+... .++|+++..++...++.+.+++.+ +|++|.
T Consensus 119 ~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~d---IlV~Tp 186 (1171)
T TIGR01054 119 KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFD---ILITTT 186 (1171)
T ss_pred hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCC---EEEECH
Confidence 347799999999877666555443 3455543 579999999999999998876555 555554
No 460
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=69.61 E-value=42 Score=39.77 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=74.5
Q ss_pred ecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhhh
Q 004103 300 CDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRK 379 (773)
Q Consensus 300 ~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~ 379 (773)
..+++.|...+..++.-.........|..+.+..++.-+.++..+|.+. .-..
T Consensus 30 ~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~---------------------------~~~~ 82 (572)
T PRK04537 30 TRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA---------------------------DRKP 82 (572)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc---------------------------cccc
Confidence 3578999999988876544444443444443333332233322221110 0011
Q ss_pred cCCcEEEEeecHHHHHHHHHHH----HhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-----ccc--ccC
Q 004103 380 SGHRVLLFSQMTRLMDILEIYL----KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-----AGG--LGL 448 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L----~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-----agg--~GL 448 (773)
.+-++||.+.....+..+.+.+ ...++.+..++|+.+.......+.. ..+ |||+|. ..- ..+
T Consensus 83 ~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~----~~d---IiV~TP~rL~~~l~~~~~~ 155 (572)
T PRK04537 83 EDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ----GVD---VIIATPGRLIDYVKQHKVV 155 (572)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC----CCC---EEEECHHHHHHHHHhcccc
Confidence 2458999999988776655544 4457889999999998776655542 233 566663 221 246
Q ss_pred CcccCCeeEEeCCC
Q 004103 449 NLQTADTVIIFDSD 462 (773)
Q Consensus 449 NL~~ad~VI~~D~~ 462 (773)
+|..+++||+=+.+
T Consensus 156 ~l~~v~~lViDEAh 169 (572)
T PRK04537 156 SLHACEICVLDEAD 169 (572)
T ss_pred chhheeeeEecCHH
Confidence 77778887774443
No 461
>PRK14701 reverse gyrase; Provisional
Probab=69.31 E-value=37 Score=45.08 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=46.5
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHh------CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKL------NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~------~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
.|.++||.+..+..+..+.+.|.. .++.+..++|+++.+++.++++.+..++.+ +|++|.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~d---ILV~TP 186 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFD---ILVTTA 186 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCC---EEEECC
Confidence 467899999998877777666654 256778899999999999999999877665 455553
No 462
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=69.22 E-value=20 Score=41.47 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=44.3
Q ss_pred HHHHHHHHHh-hcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhc
Q 004103 61 LEGLQWMLSL-FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWA 128 (773)
Q Consensus 61 ~~gv~~l~~~-~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~ 128 (773)
..++..++.- +..+--.++.-++|+|||+.++-++.....+ ..++++|.--....|.......+.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~---ge~~~y~s~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN---KERAILFAYEESRAQLLRNAYSWG 314 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCCHHHHHHHHHHcC
Confidence 4555555521 1222234889999999999998888776653 247888887777778777776653
No 463
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=69.15 E-value=7.8 Score=44.21 Aligned_cols=44 Identities=23% Similarity=0.248 Sum_probs=33.0
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCe-EEecCCCCCHHHHHHHHHHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNG-ILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~g-ILademGlGKTi~aiali~~l~~ 100 (773)
.-+.|+|...+..++. .+.|- ++..+||+|||.+..+++.++..
T Consensus 240 Lg~~~~~~~~~~~~~~---~p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 240 LGMSPFQLARLLRLLN---RPQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred hCCCHHHHHHHHHHHh---CCCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 4568888888877764 44444 45799999999998888877754
No 464
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=68.40 E-value=18 Score=42.09 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=35.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhc
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWA 128 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~ 128 (773)
.++..++|+|||+.++.++...... ..++++|.-.....+-.+.+..+.
T Consensus 276 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~~~yis~e~~~~~i~~~~~~~g 324 (509)
T PRK09302 276 ILVSGATGTGKTLLASKFAEAACRR---GERCLLFAFEESRAQLIRNARSWG 324 (509)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEecCCHHHHHHHHHHcC
Confidence 3778999999999998888766543 347888877666666666665543
No 465
>PRK05973 replicative DNA helicase; Provisional
Probab=68.35 E-value=14 Score=38.46 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=35.9
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhh
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 127 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~ 127 (773)
.+.-.+++.++|+|||+.++-++...... ..+++++.--..-.+-...+..+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlEes~~~i~~R~~s~ 114 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLEYTEQDVRDRLRAL 114 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEeCCHHHHHHHHHHc
Confidence 34445889999999999999888776543 34778887655555554444443
No 466
>PHA02518 ParA-like protein; Provisional
Probab=68.34 E-value=26 Score=34.99 Aligned_cols=39 Identities=23% Similarity=0.448 Sum_probs=27.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCCCEEEE--eCCcchHHHHH
Q 004103 81 DEMGLGKTIQTIALIAYLLENKGVTGPHVIV--APKAVLPNWIN 122 (773)
Q Consensus 81 demGlGKTi~aiali~~l~~~~~~~gp~LIV--vP~sll~qW~~ 122 (773)
.-=|.|||..++.++.++...+ .++|+| -|...+..|..
T Consensus 8 ~KGGvGKTT~a~~la~~la~~g---~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 8 QKGGAGKTTVATNLASWLHADG---HKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHhCC---CeEEEEeCCCCCChHHHHH
Confidence 3458999999999888877542 356655 26677777864
No 467
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=68.27 E-value=2.2 Score=42.21 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=44.7
Q ss_pred EecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcCCc
Q 004103 79 LADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRF 157 (773)
Q Consensus 79 LademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~ 157 (773)
|..+=|-|||...-.+++.+..... .+++|.+|. .-+..-.+.+.+ .+...-|.............. .....
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~~~~~~~lf~~~~~---~l~~~~~~~~~~~~~~~~~~~--~~~~~ 74 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQKGK--IRILVTAPSPENVQTLFEFAEK---GLKALGYKEEKKKRIGQIIKL--RFNKQ 74 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-------------------------------CC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCCHHHHHHHHHHHHh---hcccccccccccccccccccc--ccccc
Confidence 4455799999665444444433221 478888897 323322221111 122222221110000000000 00234
Q ss_pred cEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccceEEEecCCC
Q 004103 158 NVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTP 216 (773)
Q Consensus 158 ~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllLTgTP 216 (773)
.|-...++.+.... ...+++|||||=-+- -..+.+. +....++++|.|-
T Consensus 75 ~i~f~~Pd~l~~~~-----~~~DlliVDEAAaIp--~p~L~~l---l~~~~~vv~stTi 123 (177)
T PF05127_consen 75 RIEFVAPDELLAEK-----PQADLLIVDEAAAIP--LPLLKQL---LRRFPRVVFSTTI 123 (177)
T ss_dssp C--B--HHHHCCT---------SCEEECTGGGS---HHHHHHH---HCCSSEEEEEEEB
T ss_pred eEEEECCHHHHhCc-----CCCCEEEEechhcCC--HHHHHHH---HhhCCEEEEEeec
Confidence 45555555443321 135899999996652 2223333 2455688888883
No 468
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=68.24 E-value=20 Score=37.04 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe--CCcchHHHHHHHH
Q 004103 82 EMGLGKTIQTIALIAYLLENKGVTGPHVIVA--PKAVLPNWINEFS 125 (773)
Q Consensus 82 emGlGKTi~aiali~~l~~~~~~~gp~LIVv--P~sll~qW~~E~~ 125 (773)
-=|.|||..+++++..+...+ +++.+|= |..-+..|.+-..
T Consensus 10 KGGaGKTT~~~~LAs~la~~G---~~V~lIDaDpn~pl~~W~~~a~ 52 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARG---ARVALIDADPNQPLAKWAENAQ 52 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCC---CeEEEEeCCCCCcHHHHHHhcc
Confidence 349999999999988887653 3555553 7777889966543
No 469
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=67.81 E-value=18 Score=44.14 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=18.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l 98 (773)
.++..++|+|||..|-+++..+
T Consensus 487 ~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 487 FLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred EEEECCCCccHHHHHHHHHHHh
Confidence 3789999999999987777655
No 470
>PRK06321 replicative DNA helicase; Provisional
Probab=67.79 E-value=67 Score=37.04 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=39.2
Q ss_pred HHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHH
Q 004103 64 LQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFS 125 (773)
Q Consensus 64 v~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~ 125 (773)
+..++.-+..+.=.|||..+|.|||.-++.++....... ..|++++..--.-.++...+-
T Consensus 216 LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~--g~~v~~fSLEMs~~ql~~Rll 275 (472)
T PRK06321 216 LDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQN--RLPVGIFSLEMTVDQLIHRII 275 (472)
T ss_pred HHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc--CCeEEEEeccCCHHHHHHHHH
Confidence 444553333333348899999999999988776654321 347888877666666655543
No 471
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=67.58 E-value=42 Score=45.60 Aligned_cols=64 Identities=13% Similarity=0.053 Sum_probs=43.7
Q ss_pred cCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHH
Q 004103 51 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN 119 (773)
Q Consensus 51 l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~q 119 (773)
+.+..|.+-|.+++..++.. ...-.||.-..|+|||.++-+++.. .+.. ...+++++|+.-..+
T Consensus 425 ~~~~~Ls~~Q~~Av~~il~s--~~~v~ii~G~aGTGKTt~l~~l~~~-~~~~--G~~V~~lAPTgrAA~ 488 (1960)
T TIGR02760 425 LSEFALSPSNKDAVSTLFTS--TKRFIIINGFGGTGSTEIAQLLLHL-ASEQ--GYEIQIITAGSLSAQ 488 (1960)
T ss_pred cccCCCCHHHHHHHHHHHhC--CCCeEEEEECCCCCHHHHHHHHHHH-HHhc--CCeEEEEeCCHHHHH
Confidence 44568999999999887741 1233578889999999766555544 4432 347889999854443
No 472
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=67.38 E-value=9.7 Score=40.28 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=31.7
Q ss_pred CCchHHHHHHHHHHHHhhcCCC-CeEEecCCCCCHHHHHHHHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNL-NGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~-~gILademGlGKTi~aiali~~l 98 (773)
..+.+.|.+.+.+++. ... ..+++-++|+|||.+.-+++.++
T Consensus 62 lg~~~~~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 62 LGLKPENLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred cCCCHHHHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 3477888888887774 233 35789999999998887777665
No 473
>PHA00012 I assembly protein
Probab=67.26 E-value=11 Score=40.81 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=18.8
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHh
Q 004103 78 ILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~ 101 (773)
++..-+|+|||+.|++-|...+..
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHc
Confidence 456679999999999877666654
No 474
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=67.26 E-value=62 Score=36.71 Aligned_cols=86 Identities=12% Similarity=0.183 Sum_probs=54.6
Q ss_pred CCcEEEEeecHHHHHHHH----HHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-cc-----cccCCc
Q 004103 381 GHRVLLFSQMTRLMDILE----IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-AG-----GLGLNL 450 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~----~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-ag-----g~GLNL 450 (773)
+.++||.+.....+..+. .+....++++..++|+.....+...+. . +.+ +|++|. .. ...+++
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~---~-~~~---IlV~Tp~rl~~~~~~~~~~~ 145 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS---E-NQD---IVVATPGRLLQYIKEENFDC 145 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc---C-CCC---EEEEChHHHHHHHHcCCcCc
Confidence 358999999887665554 444556899999999999877665543 2 233 566653 11 235677
Q ss_pred ccCCeeEEeCCC----CChhhHHHHhh
Q 004103 451 QTADTVIIFDSD----WNPQMDQQAED 473 (773)
Q Consensus 451 ~~ad~VI~~D~~----wNp~~~~Qa~g 473 (773)
...+.||+=+.+ |.....++.+.
T Consensus 146 ~~v~~lViDEah~~l~~~~~~~~~~i~ 172 (434)
T PRK11192 146 RAVETLILDEADRMLDMGFAQDIETIA 172 (434)
T ss_pred ccCCEEEEECHHHHhCCCcHHHHHHHH
Confidence 788888875544 44444444443
No 475
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=66.99 E-value=17 Score=34.35 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCC----CeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 367 FELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLND----FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 367 ~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g----~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
...+.+++.+..+.|+|++|+|.....++.|-+.|-... ++..+ .|.-. ....+ |+|++.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~-~~~~~------------~~~~P---V~i~~~ 78 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGL-AGEPP------------AARQP---VLITWD 78 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEE-TT-SS------------TT--S---EEEE-T
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcc-cCCCC------------CCCCe---EEEecC
Confidence 578899999999999999999999999999999984332 23333 22211 11223 566654
Q ss_pred cccccCCcccCCeeEEeCCCC
Q 004103 443 AGGLGLNLQTADTVIIFDSDW 463 (773)
Q Consensus 443 agg~GLNL~~ad~VI~~D~~w 463 (773)
... -....++.+|+++..+
T Consensus 79 ~~~--~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 79 QEA--NPNNHADVLINLSGEV 97 (137)
T ss_dssp TS------S--SEEEE--SS-
T ss_pred ccc--CCCCCCCEEEECCCCC
Confidence 322 2234589999998876
No 476
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=66.72 E-value=10 Score=37.71 Aligned_cols=41 Identities=27% Similarity=0.259 Sum_probs=31.3
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHH
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA 96 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~ 96 (773)
.+.+-+.|.+-+.+++. .+...+++-++|+|||...-+++.
T Consensus 7 ~g~~~~~~~~~l~~~v~---~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 7 QGTFSPLQAAYLWLAVE---ARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred cCCCCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHHHHHHHh
Confidence 45677888888887775 566778999999999977655544
No 477
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=66.34 E-value=12 Score=41.51 Aligned_cols=61 Identities=21% Similarity=0.298 Sum_probs=44.9
Q ss_pred CchHHHHHHHHHHHHhh--cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchH
Q 004103 55 ELRAYQLEGLQWMLSLF--NNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP 118 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~--~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~ 118 (773)
+|-+-|..++..++... ..+.+..+..+-|+|||...=+++.++.. ...++++++|+.+..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~---~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS---RGKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc---ccceEEEecchHHHH
Confidence 46788999999887665 34455578899999999887777766544 234788899985544
No 478
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=66.33 E-value=31 Score=36.71 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHh------------hcCCCCeEEecCCCCCHHHHHHHHH
Q 004103 57 RAYQLEGLQWMLSL------------FNNNLNGILADEMGLGKTIQTIALI 95 (773)
Q Consensus 57 rpyQ~~gv~~l~~~------------~~~~~~gILademGlGKTi~aiali 95 (773)
.+-|+.-+...+.+ ...+.+.||..++|+|||+.|-|++
T Consensus 190 le~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVA 240 (440)
T KOG0726|consen 190 LESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVA 240 (440)
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHh
Confidence 45566666555543 2456678999999999999987776
No 479
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=66.27 E-value=7.5 Score=41.05 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=24.4
Q ss_pred HHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHH
Q 004103 66 WMLSLFNNNLNGILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 66 ~l~~~~~~~~~gILademGlGKTi~aiali~~l~ 99 (773)
+|......+.+.+++.++|+|||.++-+++.++-
T Consensus 119 ~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 119 FLRSAVRGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp HHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred HHhhccccceEEEEECCCccccchHHHHHhhhcc
Confidence 3444445677778999999999988877765443
No 480
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=66.26 E-value=21 Score=38.05 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=34.9
Q ss_pred CCe-EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhc
Q 004103 75 LNG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWA 128 (773)
Q Consensus 75 ~~g-ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~ 128 (773)
..| +|..++|+||+..|-|++... ...+.-|....|++.|..|-++..
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEA------nSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhc------CCceEEeehHHHHHHHhccHHHHH
Confidence 345 568999999999887777532 235666777789999987766543
No 481
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=66.12 E-value=13 Score=41.89 Aligned_cols=58 Identities=24% Similarity=0.193 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHH-HHHhcCCCCCEEEEeCCcchHHHHH
Q 004103 59 YQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAY-LLENKGVTGPHVIVAPKAVLPNWIN 122 (773)
Q Consensus 59 yQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~-l~~~~~~~gp~LIVvP~sll~qW~~ 122 (773)
.++..+..++....++.|.|+-.+.|+|||..+.++..+ ....+ ..+.+..++.+-..
T Consensus 194 ~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG------~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 194 QKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG------GTITVAKLFYNIST 252 (449)
T ss_pred HHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC------CcCcHHHHHHHHHH
Confidence 444555555556678999999999999999988887766 34332 33445555555443
No 482
>CHL00195 ycf46 Ycf46; Provisional
Probab=65.91 E-value=9 Score=44.25 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=24.6
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 115 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~s 115 (773)
+.+.+|..+.|+|||+.|=+++..+ .-|++.+-+..
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~~ 294 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVGK 294 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhHH
Confidence 4456789999999999886666543 22666665543
No 483
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=65.38 E-value=65 Score=32.30 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=26.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 115 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~s 115 (773)
..+..+.|+|||..++.++...... ..+++.|.-..
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e~ 50 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTEG 50 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC
Confidence 3678999999999998888776543 34667776654
No 484
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=65.19 E-value=1.8e+02 Score=34.50 Aligned_cols=77 Identities=12% Similarity=0.046 Sum_probs=54.7
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccc-----cCCcccCCe
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL-----GLNLQTADT 455 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~-----GLNL~~ad~ 455 (773)
+..+||.+..+..+.-....|...|++...++|+.+.+++..++.....+..+ +++++...... -++....+.
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~--il~~tpe~l~~~~~~~~l~~~~l~~ 130 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELK--LLYVAPERLEQDYFLNMLQRIPIAL 130 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCC--EEEEChhHhcChHHHHHHhcCCCCE
Confidence 34688889999888777778888899999999999999999988888776554 44454433321 123344556
Q ss_pred eEEe
Q 004103 456 VIIF 459 (773)
Q Consensus 456 VI~~ 459 (773)
||+=
T Consensus 131 iViD 134 (591)
T TIGR01389 131 VAVD 134 (591)
T ss_pred EEEe
Confidence 6653
No 485
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=65.08 E-value=33 Score=36.16 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=17.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 004103 78 ILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~ 99 (773)
.|....|.|||..|..++....
T Consensus 23 ~I~G~~G~GKT~LA~~~~~~~~ 44 (287)
T PF00931_consen 23 AIVGMGGIGKTTLARQVARDLR 44 (287)
T ss_dssp EEEESTTSSHHHHHHHHHCHHH
T ss_pred EEEcCCcCCcceeeeecccccc
Confidence 5678899999999888775544
No 486
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=64.76 E-value=1.3e+02 Score=29.87 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=37.3
Q ss_pred HHHHhhcCeeEEEEccccccCCh----hhHHHHHHHccccceEEEecCCCCCCCHHHHHHhhccc
Q 004103 171 RQYLKKVQWIYMIVDEGHRLKNH----ECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFL 231 (773)
Q Consensus 171 ~~~l~~~~~~~vIiDEaH~lkn~----~s~~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L 231 (773)
...+..-.|++||+||.-..-+. ...+...+..-+..--+.|||- +-+.+|..+.+++
T Consensus 108 ~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR---~~p~~Lie~AD~V 169 (178)
T PRK07414 108 QAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGP---EMPESLLAIADQI 169 (178)
T ss_pred HHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECC---CCCHHHHHhCCee
Confidence 34555678999999998665432 2345555555556667999996 4555555554443
No 487
>PRK10436 hypothetical protein; Provisional
Probab=64.71 E-value=8.2 Score=44.24 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=32.7
Q ss_pred cCCCCchHHHHHHHHHHHHhhcCCCC-eEEecCCCCCHHHHHHHHHHHH
Q 004103 51 LQGGELRAYQLEGLQWMLSLFNNNLN-GILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 51 l~~~~LrpyQ~~gv~~l~~~~~~~~~-gILademGlGKTi~aiali~~l 98 (773)
+....+.+.|++.+..++. ...| .+++.+||+|||.+..+++.++
T Consensus 197 L~~LG~~~~~~~~l~~~~~---~~~GliLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 197 LETLGMTPAQLAQFRQALQ---QPQGLILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred HHHcCcCHHHHHHHHHHHH---hcCCeEEEECCCCCChHHHHHHHHHhh
Confidence 3345678888888887774 2333 3678999999998877777665
No 488
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.54 E-value=14 Score=42.25 Aligned_cols=121 Identities=16% Similarity=0.261 Sum_probs=85.5
Q ss_pred HHHHHHHhhhcC-CcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc-cccc
Q 004103 370 LDRLLPKLRKSG-HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA-GGLG 447 (773)
Q Consensus 370 L~~ll~~l~~~g-~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a-gg~G 447 (773)
...|++.+...+ .-+|||-..---.-.+..|+...++.+..|+--++...-..+-+-|-.|... ++|.+-++ .=.-
T Consensus 540 v~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~--vlLyTER~hffrR 617 (698)
T KOG2340|consen 540 VDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKS--VLLYTERAHFFRR 617 (698)
T ss_pred HHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCce--EEEEehhhhhhhh
Confidence 456778876654 5678887766556667888888899999999888888878888889887654 56666665 2345
Q ss_pred CCcccCCeeEEeCCCCChhhHHHHh---hhhhhcCCc--CeEEEEEEEeC
Q 004103 448 LNLQTADTVIIFDSDWNPQMDQQAE---DRAHRIGQK--KEVRVFVLVSV 492 (773)
Q Consensus 448 LNL~~ad~VI~~D~~wNp~~~~Qa~---gRa~RiGQ~--k~V~V~rLi~~ 492 (773)
-.+.++..||+|.||-||+-|.--+ +|+--.|.+ ....|-.|.++
T Consensus 618 ~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 618 YHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred heecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 6778899999999999999776443 444444432 22444445554
No 489
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=64.49 E-value=22 Score=38.65 Aligned_cols=104 Identities=19% Similarity=0.261 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHH
Q 004103 91 TIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMR 169 (773)
Q Consensus 91 aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~ 169 (773)
.+.+..++........|+||.+|. ..+.+...-+++-+|...+...+.....|...-+.+.. +..+++|||-= +.+
T Consensus 291 ~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~--G~~~lLiTTTI-LER 367 (441)
T COG4098 291 PLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRD--GKITLLITTTI-LER 367 (441)
T ss_pred CHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHc--CceEEEEEeeh-hhc
Confidence 456677777666667799999999 78888888888888888877777766666665555544 78899998842 211
Q ss_pred hHHHHhhcCeeEEEEccccccCChhhHHHHHH
Q 004103 170 DRQYLKKVQWIYMIVDEGHRLKNHECALAKTI 201 (773)
Q Consensus 170 ~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l 201 (773)
. ..--+.++.|++--|++-. .+.+.++.
T Consensus 368 G---VTfp~vdV~Vlgaeh~vfT-esaLVQIa 395 (441)
T COG4098 368 G---VTFPNVDVFVLGAEHRVFT-ESALVQIA 395 (441)
T ss_pred c---cccccceEEEecCCccccc-HHHHHHHh
Confidence 1 1112568899998787654 33444433
No 490
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=64.49 E-value=23 Score=38.76 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=22.5
Q ss_pred eeEEEEccccccCChhhHHHHHHHccccceEEEecCCCCC
Q 004103 179 WIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 218 (773)
Q Consensus 179 ~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllLTgTP~~ 218 (773)
-.++.|||.||+.. ++.--.|-.+...-.+++-||.-.
T Consensus 223 kTilFiDEiHRFNk--sQQD~fLP~VE~G~I~lIGATTEN 260 (554)
T KOG2028|consen 223 KTILFIDEIHRFNK--SQQDTFLPHVENGDITLIGATTEN 260 (554)
T ss_pred eeEEEeHHhhhhhh--hhhhcccceeccCceEEEecccCC
Confidence 35789999999832 222222333355566777777533
No 491
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=64.31 E-value=66 Score=32.71 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=26.3
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 114 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~ 114 (773)
..++.+.|+|||..++.++...... ..++++|.-.
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~---~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKN---GKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEECC
Confidence 3789999999999999988877653 2466666543
No 492
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=63.80 E-value=9.2 Score=42.13 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhcCCC----CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Q 004103 60 QLEGLQWMLSLFNNNL----NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 116 (773)
Q Consensus 60 Q~~gv~~l~~~~~~~~----~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sl 116 (773)
..+|..-++.+.+.+. ..+++.++|+|||..|++++..|- ..-|+..++-..+
T Consensus 32 AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG----~~~PF~~isgSEi 88 (398)
T PF06068_consen 32 AREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELG----EDVPFVSISGSEI 88 (398)
T ss_dssp HHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCT----TTS-EEEEEGGGG
T ss_pred HHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhC----CCCCeeEccccee
Confidence 3455555556554443 347899999999999988887663 3348877776544
No 493
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=63.16 E-value=33 Score=37.12 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=27.5
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHHh-------cCCCCCEEEEe
Q 004103 72 NNNLNGILADEMGLGKTIQTIALIAYLLEN-------KGVTGPHVIVA 112 (773)
Q Consensus 72 ~~~~~gILademGlGKTi~aiali~~l~~~-------~~~~gp~LIVv 112 (773)
..+...||+.+-|+|||+..|-+...+..- -...|.+|+|.
T Consensus 87 r~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvs 134 (402)
T COG3598 87 RKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVS 134 (402)
T ss_pred hcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEE
Confidence 456677999999999999877665544431 12345666664
No 494
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.16 E-value=23 Score=40.72 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.1
Q ss_pred CeEEecCCCCCHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALI 95 (773)
Q Consensus 76 ~gILademGlGKTi~aiali 95 (773)
+.+|..++|+|||+.|=|++
T Consensus 339 GVLLvGPPGTGKTlLARAvA 358 (752)
T KOG0734|consen 339 GVLLVGPPGTGKTLLARAVA 358 (752)
T ss_pred ceEEeCCCCCchhHHHHHhh
Confidence 55889999999999887766
No 495
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=63.13 E-value=58 Score=31.52 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=23.3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEE
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 111 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIV 111 (773)
+....-|.|||.+++.++..+...+ .++|+|
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g---~~vllv 34 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLG---YKVGLL 34 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcC---CcEEEE
Confidence 4556779999999999998887642 356665
No 496
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=62.23 E-value=1.1e+02 Score=32.76 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=61.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcCCc
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRF 157 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~ 157 (773)
++..+-|+||+..|.+++.++..... + ..+..|. ..-.|++..+.-.|...
T Consensus 23 Lf~G~~G~Gk~~lA~~~A~~llC~~~---~-------~~c~~~~---~~~HPD~~~i~p~~~~~---------------- 73 (290)
T PRK05917 23 ILHGQDLSNLSARAYELASLILKETS---P-------EAAYKIS---QKIHPDIHEFSPQGKGR---------------- 73 (290)
T ss_pred eeECCCCCcHHHHHHHHHHHHhCCCC---c-------cHHHHHh---cCCCCCEEEEecCCCCC----------------
Confidence 67889999999999999988876421 1 0111111 11236655443232210
Q ss_pred cEEEcCHHHHHHhHHHHh----hcCeeEEEEccccccCC-hhhHHHHHHHccccceEEEecCCCCCCCHHHHH
Q 004103 158 NVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGTPIQNSLQELW 225 (773)
Q Consensus 158 ~VvItTye~l~~~~~~l~----~~~~~~vIiDEaH~lkn-~~s~~~~~l~~~~~~~rllLTgTP~~n~~~el~ 225 (773)
..+-+.+..-...+. .-.+.++|||+||.|.. ....+-+.+..-+..-.++|.++-...-+.-+.
T Consensus 74 ---~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~ 143 (290)
T PRK05917 74 ---LHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIR 143 (290)
T ss_pred ---cCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHH
Confidence 011122211111111 13678999999999953 333555666555555566666554333333333
No 497
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=61.45 E-value=11 Score=43.50 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=33.3
Q ss_pred CcCCCCchHHHHHHHHHHHHhhcCCCC-eEEecCCCCCHHHHHHHHHHHH
Q 004103 50 LLQGGELRAYQLEGLQWMLSLFNNNLN-GILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 50 ~l~~~~LrpyQ~~gv~~l~~~~~~~~~-gILademGlGKTi~aiali~~l 98 (773)
.+....+.|.|.+.+.+++. .+.+ .+++.+||+|||.+.-+++.++
T Consensus 220 ~l~~Lg~~~~~~~~l~~~~~---~~~GlilitGptGSGKTTtL~a~L~~l 266 (486)
T TIGR02533 220 DLETLGMSPELLSRFERLIR---RPHGIILVTGPTGSGKTTTLYAALSRL 266 (486)
T ss_pred CHHHcCCCHHHHHHHHHHHh---cCCCEEEEEcCCCCCHHHHHHHHHhcc
Confidence 33345678899999988874 3333 3679999999998876666554
No 498
>PRK07773 replicative DNA helicase; Validated
Probab=61.13 E-value=38 Score=42.34 Aligned_cols=128 Identities=13% Similarity=0.067 Sum_probs=67.3
Q ss_pred HHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEE-ecCC-
Q 004103 62 EGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVV-YDGR- 139 (773)
Q Consensus 62 ~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~-~~g~- 139 (773)
.++..++.-+..+.=.|+|..+|.|||..++.++....... ..+++++.--....+....+.....++.... ..|.
T Consensus 205 ~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~--~~~V~~fSlEms~~ql~~R~~s~~~~i~~~~i~~g~l 282 (886)
T PRK07773 205 TELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRH--RLAVAIFSLEMSKEQLVMRLLSAEAKIKLSDMRSGRM 282 (886)
T ss_pred hHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhc--CCeEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 34444443233333358899999999999999887765432 3478888766666665555543322221111 1121
Q ss_pred -hhHHHHHHHHHHhhcCCccEEE-----cCHHHHHHhHHH-HhhcCeeEEEEccccccCC
Q 004103 140 -PDERKAMREEFFSERGRFNVLI-----THYDLIMRDRQY-LKKVQWIYMIVDEGHRLKN 192 (773)
Q Consensus 140 -~~~r~~~~~~~~~~~~~~~VvI-----tTye~l~~~~~~-l~~~~~~~vIiDEaH~lkn 192 (773)
..+...+.... .......+.| .|.+.+...... ......++||||=.+.|..
T Consensus 283 ~~~~~~~~~~a~-~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~ 341 (886)
T PRK07773 283 SDDDWTRLARAM-GEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTS 341 (886)
T ss_pred CHHHHHHHHHHH-HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCC
Confidence 11211111111 1112333444 244555443332 3345688999998877753
No 499
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=60.72 E-value=28 Score=35.60 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=30.1
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 121 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~ 121 (773)
+...+++.++|+|||..+..++...... ..+++++.-.....+..
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~e~~~~~i~ 64 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTTEESRESII 64 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEccCCHHHHH
Confidence 3445789999999999998877655543 23667776554444443
No 500
>CHL00095 clpC Clp protease ATP binding subunit
Probab=60.36 E-value=12 Score=46.28 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhc----------CCCC-eEEecCCCCCHHHHHHHHHHHHHH
Q 004103 59 YQLEGLQWMLSLFN----------NNLN-GILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 59 yQ~~gv~~l~~~~~----------~~~~-gILademGlGKTi~aiali~~l~~ 100 (773)
-|-+++..+..... .+.+ -+++.++|+|||..|-+++..+..
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC
Confidence 46677666644321 1122 378999999999999888877653
Done!