Query 004103
Match_columns 773
No_of_seqs 458 out of 3126
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 14:22:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 1.6E-82 5.3E-87 768.4 40.4 491 44-546 225-740 (800)
2 1z3i_X Similar to RAD54-like; 100.0 4E-75 1.4E-79 687.4 36.8 465 54-518 54-553 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 2.4E-69 8.1E-74 621.3 36.3 442 48-517 31-477 (500)
4 3dmq_A RNA polymerase-associat 100.0 3.3E-50 1.1E-54 493.3 29.4 429 54-509 152-631 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 4.7E-46 1.6E-50 421.9 30.7 429 54-510 8-492 (494)
6 2fwr_A DNA repair protein RAD2 100.0 5.3E-43 1.8E-47 399.2 21.0 373 52-509 90-470 (472)
7 1z5z_A Helicase of the SNF2/RA 100.0 1.4E-41 4.7E-46 358.6 16.1 233 278-517 13-248 (271)
8 4a2p_A RIG-I, retinoic acid in 100.0 5.8E-39 2E-43 372.2 32.1 434 54-515 6-529 (556)
9 4a2q_A RIG-I, retinoic acid in 100.0 1.1E-38 3.9E-43 385.9 32.1 439 53-516 246-771 (797)
10 4a2w_A RIG-I, retinoic acid in 100.0 1.4E-38 4.6E-43 389.9 29.0 402 53-516 246-771 (936)
11 3tbk_A RIG-I helicase domain; 100.0 1.4E-38 4.6E-43 368.6 26.5 400 54-514 3-527 (555)
12 2oca_A DAR protein, ATP-depend 100.0 9.9E-36 3.4E-40 342.5 25.9 346 54-499 112-464 (510)
13 4gl2_A Interferon-induced heli 100.0 8.4E-36 2.9E-40 356.0 26.0 431 54-514 6-540 (699)
14 2ykg_A Probable ATP-dependent 100.0 6.1E-35 2.1E-39 348.4 30.5 418 51-498 9-521 (696)
15 3hgt_A HDA1 complex subunit 3; 100.0 4.6E-35 1.6E-39 309.4 17.9 206 290-503 20-247 (328)
16 1xti_A Probable ATP-dependent 100.0 2.5E-33 8.4E-38 310.3 32.2 329 55-505 30-368 (391)
17 3h1t_A Type I site-specific re 100.0 1.7E-34 5.8E-39 338.2 21.3 354 53-491 176-559 (590)
18 1s2m_A Putative ATP-dependent 100.0 1.3E-32 4.5E-37 305.8 30.5 315 55-493 43-365 (400)
19 1hv8_A Putative ATP-dependent 100.0 1.5E-32 5.2E-37 300.6 30.5 310 54-493 27-345 (367)
20 2j0s_A ATP-dependent RNA helic 100.0 1.4E-32 4.7E-37 306.9 29.3 317 55-493 59-383 (410)
21 2z0m_A 337AA long hypothetical 100.0 5.2E-32 1.8E-36 293.1 25.6 312 54-503 15-334 (337)
22 3eiq_A Eukaryotic initiation f 100.0 5.7E-32 1.9E-36 301.7 25.0 319 54-493 61-387 (414)
23 2db3_A ATP-dependent RNA helic 100.0 5.3E-31 1.8E-35 297.1 31.0 315 54-492 77-406 (434)
24 2i4i_A ATP-dependent RNA helic 100.0 5.3E-31 1.8E-35 294.3 30.1 318 54-493 36-383 (417)
25 3pey_A ATP-dependent RNA helic 100.0 3E-31 1E-35 293.3 27.5 315 54-492 26-355 (395)
26 1fuu_A Yeast initiation factor 100.0 1.6E-32 5.6E-37 303.8 11.0 317 54-493 42-366 (394)
27 3oiy_A Reverse gyrase helicase 100.0 6.3E-30 2.1E-34 286.2 31.4 316 54-507 20-375 (414)
28 1oyw_A RECQ helicase, ATP-depe 100.0 3.5E-30 1.2E-34 296.7 28.6 303 54-486 24-338 (523)
29 3fht_A ATP-dependent RNA helic 100.0 3.3E-30 1.1E-34 287.1 27.5 329 54-506 46-391 (412)
30 2v1x_A ATP-dependent DNA helic 100.0 1.5E-29 5.2E-34 294.6 29.0 311 54-487 43-370 (591)
31 3sqw_A ATP-dependent RNA helic 100.0 1.7E-28 5.8E-33 286.6 28.8 337 54-505 42-408 (579)
32 3i5x_A ATP-dependent RNA helic 100.0 4.1E-28 1.4E-32 282.4 28.6 337 54-505 93-459 (563)
33 3fho_A ATP-dependent RNA helic 100.0 1.9E-29 6.5E-34 290.0 11.8 313 55-487 141-466 (508)
34 2eyq_A TRCF, transcription-rep 100.0 1.2E-27 4E-32 297.4 28.3 308 53-493 601-922 (1151)
35 3fmp_B ATP-dependent RNA helic 99.9 5.4E-29 1.9E-33 284.1 7.7 311 54-485 113-440 (479)
36 2xgj_A ATP-dependent RNA helic 99.9 2.2E-26 7.4E-31 282.2 30.8 350 53-494 84-500 (1010)
37 1gm5_A RECG; helicase, replica 99.9 9.1E-28 3.1E-32 285.9 15.2 307 54-487 367-693 (780)
38 3l9o_A ATP-dependent RNA helic 99.9 4.2E-25 1.4E-29 273.1 27.5 363 53-497 182-601 (1108)
39 2va8_A SSO2462, SKI2-type heli 99.9 9.3E-25 3.2E-29 261.3 29.5 327 55-494 30-409 (715)
40 4a4z_A Antiviral helicase SKI2 99.9 1.2E-24 4.1E-29 266.7 29.4 371 53-502 37-501 (997)
41 2zj8_A DNA helicase, putative 99.9 3.8E-25 1.3E-29 264.8 23.2 320 55-497 23-391 (720)
42 2p6r_A Afuhel308 helicase; pro 99.9 2.2E-25 7.5E-30 266.1 20.2 320 55-496 25-391 (702)
43 4ddu_A Reverse gyrase; topoiso 99.9 3.2E-24 1.1E-28 265.1 31.0 320 53-510 76-505 (1104)
44 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 2.1E-23 7.2E-28 254.5 26.9 348 54-491 270-707 (1038)
45 1gku_B Reverse gyrase, TOP-RG; 99.9 6.7E-23 2.3E-27 253.3 20.2 316 54-509 56-468 (1054)
46 2v6i_A RNA helicase; membrane, 99.9 5.1E-21 1.7E-25 215.1 16.9 95 381-483 171-282 (431)
47 1tf5_A Preprotein translocase 99.8 6E-20 2E-24 215.3 22.0 116 364-484 415-538 (844)
48 2wv9_A Flavivirin protease NS2 99.8 2.7E-21 9.3E-26 227.5 9.6 120 380-509 409-550 (673)
49 2jlq_A Serine protease subunit 99.8 1.9E-20 6.5E-25 211.8 15.3 94 380-481 187-300 (451)
50 1yks_A Genome polyprotein [con 99.8 8.4E-21 2.9E-25 213.9 12.2 93 380-480 176-287 (440)
51 2z83_A Helicase/nucleoside tri 99.8 2.4E-20 8.1E-25 211.4 14.9 104 381-493 190-313 (459)
52 4f92_B U5 small nuclear ribonu 99.8 7.1E-19 2.4E-23 225.0 29.4 322 54-493 925-1308(1724)
53 2fsf_A Preprotein translocase 99.8 7E-19 2.4E-23 205.7 23.0 118 364-486 424-578 (853)
54 2whx_A Serine protease/ntpase/ 99.8 1.1E-19 3.7E-24 212.4 14.2 285 69-507 181-493 (618)
55 1nkt_A Preprotein translocase 99.8 1.5E-18 5E-23 203.3 23.2 117 364-485 443-611 (922)
56 4f92_B U5 small nuclear ribonu 99.8 2.3E-18 7.8E-23 220.3 24.7 324 54-495 78-475 (1724)
57 1rif_A DAR protein, DNA helica 99.8 9.1E-20 3.1E-24 193.2 10.0 163 54-233 112-278 (282)
58 1t5i_A C_terminal domain of A 99.8 1.2E-18 4.2E-23 170.7 14.7 123 363-492 15-137 (172)
59 2xau_A PRE-mRNA-splicing facto 99.8 8.5E-19 2.9E-23 209.9 15.8 110 380-495 302-445 (773)
60 2hjv_A ATP-dependent RNA helic 99.8 1.4E-18 4.9E-23 168.7 14.3 134 363-505 19-152 (163)
61 3rc3_A ATP-dependent RNA helic 99.8 1.2E-18 3.9E-23 204.7 16.0 106 383-492 322-444 (677)
62 2fz4_A DNA repair protein RAD2 99.8 2.1E-18 7E-23 178.1 16.0 145 50-222 88-234 (237)
63 3o8b_A HCV NS3 protease/helica 99.8 3.8E-18 1.3E-22 198.3 19.0 261 73-496 231-517 (666)
64 2jgn_A DBX, DDX3, ATP-dependen 99.8 7.9E-19 2.7E-23 174.2 11.4 125 363-493 29-153 (185)
65 2d7d_A Uvrabc system protein B 99.8 9.2E-17 3.1E-21 189.4 27.4 122 367-494 431-557 (661)
66 1fuk_A Eukaryotic initiation f 99.7 6.8E-18 2.3E-22 164.2 13.9 123 365-494 16-138 (165)
67 2p6n_A ATP-dependent RNA helic 99.7 4E-18 1.4E-22 170.0 11.9 123 363-493 39-161 (191)
68 2rb4_A ATP-dependent RNA helic 99.7 2.2E-17 7.4E-22 162.2 15.1 123 365-494 20-148 (175)
69 1c4o_A DNA nucleotide excision 99.7 9.2E-16 3.1E-20 180.9 30.0 124 365-494 423-551 (664)
70 3eaq_A Heat resistant RNA depe 99.7 6.8E-17 2.3E-21 163.8 15.6 132 363-503 15-146 (212)
71 1t6n_A Probable ATP-dependent 99.7 1.6E-16 5.4E-21 161.5 16.2 162 55-224 36-207 (220)
72 2gxq_A Heat resistant RNA depe 99.7 1.4E-16 4.8E-21 160.0 15.4 156 54-217 22-186 (207)
73 3jux_A Protein translocase sub 99.7 1.1E-15 3.6E-20 175.6 24.3 117 363-484 456-580 (822)
74 2yjt_D ATP-dependent RNA helic 99.5 1.2E-18 4.1E-23 170.4 0.0 118 364-486 15-132 (170)
75 3b6e_A Interferon-induced heli 99.7 7.9E-17 2.7E-21 162.6 10.6 155 53-215 31-216 (216)
76 1vec_A ATP-dependent RNA helic 99.7 3.3E-16 1.1E-20 157.3 14.5 156 54-217 24-188 (206)
77 3ber_A Probable ATP-dependent 99.7 8.9E-16 3.1E-20 159.5 17.9 156 54-217 64-228 (249)
78 2oxc_A Probable ATP-dependent 99.7 5E-16 1.7E-20 159.2 15.1 153 55-216 46-208 (230)
79 2pl3_A Probable ATP-dependent 99.7 1.1E-15 3.7E-20 157.2 17.1 155 54-217 46-213 (236)
80 3i32_A Heat resistant RNA depe 99.6 9.8E-16 3.4E-20 163.2 15.1 124 363-493 12-135 (300)
81 1qde_A EIF4A, translation init 99.6 1.1E-15 3.9E-20 155.5 14.1 155 54-217 35-197 (224)
82 1wrb_A DJVLGB; RNA helicase, D 99.6 3.8E-15 1.3E-19 154.8 17.9 156 54-217 44-220 (253)
83 1q0u_A Bstdead; DEAD protein, 99.6 4.8E-16 1.7E-20 158.0 10.5 162 54-224 25-198 (219)
84 3bor_A Human initiation factor 99.6 1.4E-15 4.7E-20 156.8 12.7 157 54-217 51-215 (237)
85 3iuy_A Probable ATP-dependent 99.6 1.5E-14 5E-19 147.9 15.2 155 54-216 41-208 (228)
86 3ly5_A ATP-dependent RNA helic 99.6 3.9E-14 1.3E-18 148.2 16.2 155 55-217 76-243 (262)
87 3dkp_A Probable ATP-dependent 99.6 2.4E-14 8.1E-19 148.0 13.8 156 54-216 50-220 (245)
88 3fe2_A Probable ATP-dependent 99.5 5.6E-14 1.9E-18 145.1 16.3 155 54-216 50-217 (242)
89 2vl7_A XPD; helicase, unknown 99.5 4.2E-13 1.4E-17 154.9 20.8 131 53-191 5-188 (540)
90 2ipc_A Preprotein translocase 99.4 1.2E-11 4.2E-16 144.6 24.6 147 53-228 77-239 (997)
91 3fmo_B ATP-dependent RNA helic 99.4 6.2E-13 2.1E-17 141.9 9.1 155 54-217 113-278 (300)
92 4a15_A XPD helicase, ATP-depen 99.1 8.9E-09 3.1E-13 120.3 23.4 82 55-138 3-87 (620)
93 3crv_A XPD/RAD3 related DNA he 98.9 2.8E-09 9.5E-14 123.2 12.6 133 54-192 2-187 (551)
94 3llm_A ATP-dependent RNA helic 98.9 4.2E-09 1.4E-13 107.9 11.8 149 55-217 61-219 (235)
95 4b3f_X DNA-binding protein smu 97.8 4.5E-05 1.5E-09 89.6 11.0 70 53-128 187-257 (646)
96 2gk6_A Regulator of nonsense t 97.6 0.00027 9.3E-09 82.6 13.2 151 54-218 179-375 (624)
97 3upu_A ATP-dependent DNA helic 97.5 0.00035 1.2E-08 78.5 11.0 142 54-218 24-166 (459)
98 2xzl_A ATP-dependent helicase 97.4 0.00037 1.3E-08 83.5 10.7 150 54-218 359-553 (802)
99 3lfu_A DNA helicase II; SF1 he 97.4 0.0042 1.4E-07 72.7 19.4 67 55-127 9-77 (647)
100 2wjy_A Regulator of nonsense t 97.4 0.00066 2.3E-08 81.3 12.0 151 54-218 355-551 (800)
101 3e1s_A Exodeoxyribonuclease V, 97.3 0.00046 1.6E-08 79.7 9.7 132 53-219 187-318 (574)
102 1w36_D RECD, exodeoxyribonucle 97.2 0.00094 3.2E-08 77.7 10.7 146 57-221 151-303 (608)
103 2o0j_A Terminase, DNA packagin 96.6 0.032 1.1E-06 60.7 15.8 154 54-228 162-323 (385)
104 1uaa_A REP helicase, protein ( 96.5 0.098 3.3E-06 61.4 20.5 68 55-128 2-71 (673)
105 2orw_A Thymidine kinase; TMTK, 96.2 0.0084 2.9E-07 58.4 7.3 35 77-114 6-40 (184)
106 3vkw_A Replicase large subunit 96.1 0.0046 1.6E-07 68.3 5.5 108 77-219 164-272 (446)
107 1pjr_A PCRA; DNA repair, DNA r 96.0 0.15 5.1E-06 60.4 18.2 67 55-127 11-79 (724)
108 2b8t_A Thymidine kinase; deoxy 95.9 0.029 9.8E-07 56.4 9.8 35 77-114 15-49 (223)
109 3cpe_A Terminase, DNA packagin 95.8 0.042 1.5E-06 63.5 12.1 147 54-219 162-316 (592)
110 3syl_A Protein CBBX; photosynt 95.3 0.037 1.3E-06 57.9 8.7 40 76-115 69-109 (309)
111 3u61_B DNA polymerase accessor 94.9 0.098 3.3E-06 55.2 10.6 41 178-218 105-147 (324)
112 1a5t_A Delta prime, HOLB; zinc 94.9 0.13 4.5E-06 54.8 11.6 45 56-100 3-50 (334)
113 1xx6_A Thymidine kinase; NESG, 94.8 0.095 3.3E-06 51.2 9.4 34 78-114 12-45 (191)
114 1l8q_A Chromosomal replication 94.8 0.28 9.6E-06 51.7 13.7 36 75-113 38-73 (324)
115 2j9r_A Thymidine kinase; TK1, 94.8 0.076 2.6E-06 52.8 8.5 34 78-114 32-65 (214)
116 2chg_A Replication factor C sm 94.7 0.42 1.4E-05 46.3 14.0 42 57-99 22-63 (226)
117 2orv_A Thymidine kinase; TP4A 94.6 0.16 5.4E-06 51.0 10.4 34 78-114 23-56 (234)
118 3te6_A Regulatory protein SIR3 94.1 1.1 3.8E-05 47.2 16.1 45 57-101 25-72 (318)
119 2p65_A Hypothetical protein PF 94.0 0.38 1.3E-05 45.4 11.4 27 74-100 43-69 (187)
120 1jbk_A CLPB protein; beta barr 93.9 0.48 1.7E-05 44.7 12.1 43 57-100 27-69 (195)
121 1njg_A DNA polymerase III subu 93.9 0.34 1.2E-05 47.7 11.3 44 56-99 27-70 (250)
122 1iqp_A RFCS; clamp loader, ext 93.4 0.84 2.9E-05 47.5 13.9 42 57-99 30-71 (327)
123 3bos_A Putative DNA replicatio 93.2 0.19 6.4E-06 49.9 8.0 28 74-101 52-79 (242)
124 3ec2_A DNA replication protein 93.2 1.3 4.3E-05 42.1 13.7 45 57-101 16-65 (180)
125 1sxj_D Activator 1 41 kDa subu 93.1 0.38 1.3E-05 51.0 10.9 40 178-217 133-173 (353)
126 3h4m_A Proteasome-activating n 93.1 0.17 5.9E-06 52.1 7.7 37 73-115 50-86 (285)
127 3n70_A Transport activator; si 93.0 0.12 4.1E-06 47.8 5.8 26 71-96 21-46 (145)
128 1sxj_B Activator 1 37 kDa subu 93.0 0.36 1.2E-05 50.3 10.3 42 57-99 26-67 (323)
129 4b4t_J 26S protease regulatory 92.8 0.35 1.2E-05 52.7 9.9 44 74-123 182-225 (405)
130 2gno_A DNA polymerase III, gam 92.7 0.33 1.1E-05 51.0 9.3 37 61-97 3-41 (305)
131 2v1u_A Cell division control p 92.6 0.46 1.6E-05 50.8 10.6 44 57-100 24-70 (387)
132 2qby_B CDC6 homolog 3, cell di 92.5 0.39 1.3E-05 51.5 10.0 45 57-101 25-72 (384)
133 3eie_A Vacuolar protein sortin 92.2 0.27 9.3E-06 51.9 8.0 23 76-98 53-75 (322)
134 2qz4_A Paraplegin; AAA+, SPG7, 92.1 0.72 2.5E-05 46.5 10.8 36 75-116 40-75 (262)
135 1w4r_A Thymidine kinase; type 92.0 0.37 1.3E-05 47.1 7.9 34 78-114 24-57 (195)
136 2z4s_A Chromosomal replication 91.9 0.88 3E-05 50.3 12.0 27 75-101 131-157 (440)
137 1jr3_A DNA polymerase III subu 91.6 0.57 2E-05 50.0 9.9 43 57-99 21-63 (373)
138 1xwi_A SKD1 protein; VPS4B, AA 91.2 1.1 3.6E-05 47.4 11.3 38 75-117 46-83 (322)
139 3crv_A XPD/RAD3 related DNA he 91.1 1.2 4.1E-05 50.8 12.3 85 369-463 380-473 (551)
140 1fnn_A CDC6P, cell division co 91.1 2.3 7.8E-05 45.4 14.0 42 57-98 22-68 (389)
141 2qp9_X Vacuolar protein sortin 91.0 0.79 2.7E-05 49.1 10.1 24 75-98 85-108 (355)
142 3vfd_A Spastin; ATPase, microt 90.9 0.62 2.1E-05 50.5 9.3 40 75-120 149-188 (389)
143 3co5_A Putative two-component 90.8 0.13 4.6E-06 47.3 3.3 24 72-95 25-48 (143)
144 3uk6_A RUVB-like 2; hexameric 90.5 0.59 2E-05 49.9 8.6 54 56-113 48-105 (368)
145 3e2i_A Thymidine kinase; Zn-bi 90.3 0.52 1.8E-05 46.8 7.2 34 78-114 32-65 (219)
146 1ofh_A ATP-dependent HSL prote 90.3 1.3 4.4E-05 45.7 10.8 25 74-98 50-74 (310)
147 2q6t_A DNAB replication FORK h 89.6 3.3 0.00011 45.6 14.1 127 63-192 189-324 (444)
148 1sxj_E Activator 1 40 kDa subu 89.5 1.4 4.8E-05 46.7 10.5 42 178-219 134-176 (354)
149 1gm5_A RECG; helicase, replica 89.4 2.2 7.6E-05 50.6 13.0 97 363-462 399-500 (780)
150 4b4t_H 26S protease regulatory 89.3 0.91 3.1E-05 50.2 8.9 43 73-121 242-284 (467)
151 3t15_A Ribulose bisphosphate c 89.2 0.59 2E-05 48.7 7.0 36 75-116 37-72 (293)
152 2zan_A Vacuolar protein sortin 89.1 1.2 4.2E-05 49.2 9.9 41 75-120 168-208 (444)
153 2qby_A CDC6 homolog 1, cell di 88.1 1.1 3.9E-05 47.6 8.6 45 57-101 25-72 (386)
154 1sxj_C Activator 1 40 kDa subu 88.0 3.1 0.00011 43.8 12.0 39 58-99 31-71 (340)
155 4fcw_A Chaperone protein CLPB; 87.7 1.5 5.3E-05 45.3 9.2 34 76-112 49-82 (311)
156 1sxj_A Activator 1 95 kDa subu 87.6 1.1 3.8E-05 50.5 8.6 24 75-98 78-101 (516)
157 4b4t_L 26S protease subunit RP 87.2 0.77 2.6E-05 50.6 6.7 42 74-121 215-256 (437)
158 2bjv_A PSP operon transcriptio 87.2 1.8 6E-05 43.9 9.0 39 71-112 26-64 (265)
159 3cf0_A Transitional endoplasmi 87.1 1.1 3.7E-05 46.7 7.5 26 73-98 48-73 (301)
160 2r6a_A DNAB helicase, replicat 87.1 5.1 0.00018 44.2 13.4 125 63-192 192-327 (454)
161 2chq_A Replication factor C sm 87.0 0.39 1.3E-05 49.9 4.1 24 76-99 40-63 (319)
162 3oiy_A Reverse gyrase helicase 86.9 3.5 0.00012 44.6 11.9 81 379-461 62-148 (414)
163 3d8b_A Fidgetin-like protein 1 86.9 0.97 3.3E-05 48.4 7.1 37 74-116 117-153 (357)
164 4a1f_A DNAB helicase, replicat 86.5 4 0.00014 43.3 11.5 127 63-193 35-171 (338)
165 4b4t_I 26S protease regulatory 86.4 0.86 2.9E-05 50.0 6.3 43 74-122 216-258 (437)
166 3b9p_A CG5977-PA, isoform A; A 86.2 2.9 9.8E-05 43.0 10.2 24 74-97 54-77 (297)
167 3dm5_A SRP54, signal recogniti 86.0 4.3 0.00015 44.7 11.8 32 78-112 104-135 (443)
168 1g5t_A COB(I)alamin adenosyltr 85.6 4 0.00014 39.7 10.0 137 74-231 28-174 (196)
169 3kl4_A SRP54, signal recogniti 85.6 2.7 9.3E-05 46.2 9.9 32 78-112 101-132 (433)
170 3hu3_A Transitional endoplasmi 85.5 1.2 4.3E-05 49.8 7.3 25 73-97 237-261 (489)
171 1d2n_A N-ethylmaleimide-sensit 85.3 2.7 9.1E-05 42.8 9.2 22 76-97 66-87 (272)
172 3pvs_A Replication-associated 85.0 2.7 9.1E-05 46.5 9.7 22 76-97 52-73 (447)
173 1w5s_A Origin recognition comp 84.6 2.9 9.9E-05 45.0 9.6 44 57-100 27-78 (412)
174 1ojl_A Transcriptional regulat 84.4 3.4 0.00012 43.0 9.7 42 72-116 23-64 (304)
175 2kjq_A DNAA-related protein; s 84.0 2.8 9.5E-05 38.7 7.9 27 73-99 35-61 (149)
176 3hjh_A Transcription-repair-co 83.9 3.6 0.00012 45.9 10.1 85 76-169 16-115 (483)
177 1r6b_X CLPA protein; AAA+, N-t 83.0 8.2 0.00028 45.6 13.4 27 74-100 207-233 (758)
178 3bgw_A DNAB-like replicative h 82.8 5.8 0.0002 43.8 11.1 59 63-124 186-244 (444)
179 2ce7_A Cell division protein F 82.7 4.6 0.00016 45.0 10.3 33 75-113 50-82 (476)
180 2cvh_A DNA repair and recombin 81.7 5.2 0.00018 38.7 9.4 55 63-123 8-65 (220)
181 2zts_A Putative uncharacterize 81.4 8.2 0.00028 38.0 10.9 50 76-127 32-81 (251)
182 3bh0_A DNAB-like replicative h 81.1 9.5 0.00032 39.8 11.6 60 63-125 57-116 (315)
183 1qvr_A CLPB protein; coiled co 80.9 7.1 0.00024 46.9 11.8 27 74-100 191-217 (854)
184 2qen_A Walker-type ATPase; unk 80.0 12 0.00043 38.7 12.2 37 56-95 16-52 (350)
185 3k1j_A LON protease, ATP-depen 79.6 1.5 5E-05 50.6 5.1 37 59-98 48-84 (604)
186 2zr9_A Protein RECA, recombina 79.4 8.5 0.00029 40.9 10.7 56 62-120 47-104 (349)
187 2iut_A DNA translocase FTSK; n 79.0 8.2 0.00028 43.8 10.8 42 74-115 214-256 (574)
188 3fe2_A Probable ATP-dependent 78.7 31 0.001 33.9 14.1 75 380-461 101-185 (242)
189 4ddu_A Reverse gyrase; topoiso 78.6 8.6 0.0003 47.5 11.7 121 301-461 78-205 (1104)
190 2dr3_A UPF0273 protein PH0284; 78.2 14 0.00048 36.2 11.4 51 73-126 22-72 (247)
191 2w0m_A SSO2452; RECA, SSPF, un 77.8 7.3 0.00025 37.8 9.0 47 73-122 22-68 (235)
192 2zpa_A Uncharacterized protein 77.8 9.1 0.00031 44.3 10.8 54 54-115 174-227 (671)
193 2w58_A DNAI, primosome compone 76.5 3.3 0.00011 39.8 5.9 26 75-100 55-80 (202)
194 1t6n_A Probable ATP-dependent 75.7 32 0.0011 33.0 13.1 76 381-462 82-168 (220)
195 4dzz_A Plasmid partitioning pr 75.5 8.6 0.00029 36.7 8.6 78 80-190 8-87 (206)
196 1vma_A Cell division protein F 75.2 12 0.00041 38.9 10.2 32 78-112 108-139 (306)
197 2px0_A Flagellar biosynthesis 75.1 17 0.00057 37.6 11.2 33 78-112 109-141 (296)
198 3ber_A Probable ATP-dependent 74.9 27 0.00092 34.7 12.5 74 381-461 111-195 (249)
199 2eyq_A TRCF, transcription-rep 74.9 16 0.00054 45.4 12.7 97 364-462 635-735 (1151)
200 3pxi_A Negative regulator of g 74.8 5.1 0.00017 47.4 8.0 23 77-99 524-546 (758)
201 3iuy_A Probable ATP-dependent 74.1 22 0.00076 34.5 11.4 74 380-460 93-175 (228)
202 1zu4_A FTSY; GTPase, signal re 73.1 16 0.00056 38.2 10.7 32 78-112 109-140 (320)
203 3u4q_B ATP-dependent helicase/ 72.6 5.7 0.0002 49.5 8.1 51 78-128 5-55 (1166)
204 1xp8_A RECA protein, recombina 72.2 16 0.00053 39.1 10.4 56 63-121 61-118 (366)
205 4b4t_M 26S protease regulatory 71.3 1.3 4.5E-05 48.7 1.7 42 74-121 215-256 (434)
206 2z43_A DNA repair and recombin 70.3 20 0.00069 37.4 10.6 54 63-116 95-152 (324)
207 2fna_A Conserved hypothetical 70.0 57 0.0019 33.5 14.2 36 57-97 18-53 (357)
208 1nlf_A Regulatory protein REPA 69.6 13 0.00046 37.7 8.8 53 73-126 29-89 (279)
209 2oxc_A Probable ATP-dependent 69.4 38 0.0013 33.0 11.9 73 380-460 91-174 (230)
210 3u4q_A ATP-dependent helicase/ 69.3 6.2 0.00021 49.4 7.3 68 53-126 8-79 (1232)
211 3cf2_A TER ATPase, transitiona 68.9 2.9 9.8E-05 49.7 3.9 40 75-120 512-551 (806)
212 3ly5_A ATP-dependent RNA helic 68.9 90 0.0031 31.0 14.9 74 380-460 125-209 (262)
213 2xxa_A Signal recognition part 68.6 9.8 0.00034 41.7 7.9 33 78-112 104-136 (433)
214 1xti_A Probable ATP-dependent 66.9 42 0.0014 35.2 12.5 76 381-461 76-161 (391)
215 2pl3_A Probable ATP-dependent 66.7 46 0.0016 32.4 11.9 74 380-460 96-179 (236)
216 2qgz_A Helicase loader, putati 65.9 6.8 0.00023 40.8 5.7 26 74-99 152-177 (308)
217 1cr0_A DNA primase/helicase; R 65.8 15 0.00053 37.5 8.4 42 71-114 32-73 (296)
218 4b4t_K 26S protease regulatory 65.7 2 6.8E-05 47.2 1.6 41 74-120 206-246 (428)
219 1n0w_A DNA repair protein RAD5 65.7 38 0.0013 32.9 11.1 52 63-114 12-67 (243)
220 1ls1_A Signal recognition part 64.1 21 0.00073 36.7 9.1 32 78-112 102-133 (295)
221 2ffh_A Protein (FFH); SRP54, s 63.8 17 0.00057 39.8 8.5 32 78-112 102-133 (425)
222 2gxq_A Heat resistant RNA depe 62.9 78 0.0027 29.7 12.5 75 380-461 71-153 (207)
223 3io5_A Recombination and repai 62.5 27 0.00092 36.7 9.3 42 77-119 31-72 (333)
224 1tue_A Replication protein E1; 62.2 8.7 0.0003 37.7 5.2 22 77-98 61-82 (212)
225 1lv7_A FTSH; alpha/beta domain 62.1 13 0.00043 37.2 6.8 37 74-116 45-81 (257)
226 1vec_A ATP-dependent RNA helic 62.0 95 0.0033 29.1 13.0 75 380-461 70-155 (206)
227 1qde_A EIF4A, translation init 61.9 41 0.0014 32.3 10.4 75 380-461 81-164 (224)
228 1wp9_A ATP-dependent RNA helic 61.5 35 0.0012 36.6 10.9 77 379-462 50-135 (494)
229 2c9o_A RUVB-like 1; hexameric 60.4 5.6 0.00019 44.0 4.0 59 57-119 42-104 (456)
230 1v5w_A DMC1, meiotic recombina 59.5 45 0.0016 35.0 10.9 40 77-116 125-167 (343)
231 1qvr_A CLPB protein; coiled co 58.9 19 0.00063 43.2 8.5 33 76-111 590-622 (854)
232 1u94_A RECA protein, recombina 58.4 44 0.0015 35.4 10.5 52 63-117 50-103 (356)
233 3cmu_A Protein RECA, recombina 58.2 17 0.0006 47.3 8.3 52 72-128 1425-1476(2050)
234 2v1x_A ATP-dependent DNA helic 56.7 30 0.001 39.5 9.4 62 381-442 84-145 (591)
235 3hr8_A Protein RECA; alpha and 55.3 51 0.0017 35.0 10.3 40 77-119 64-103 (356)
236 3bor_A Human initiation factor 55.1 73 0.0025 31.0 11.0 76 380-461 97-182 (237)
237 3tbk_A RIG-I helicase domain; 55.0 30 0.001 38.3 9.0 74 381-460 52-135 (555)
238 4a2p_A RIG-I, retinoic acid in 54.9 34 0.0012 38.0 9.4 75 381-461 55-139 (556)
239 3fkq_A NTRC-like two-domain pr 54.2 52 0.0018 34.9 10.4 32 78-112 148-179 (373)
240 1gku_B Reverse gyrase, TOP-RG; 54.1 54 0.0018 40.2 11.6 82 375-460 93-183 (1054)
241 2i1q_A DNA repair and recombin 53.2 39 0.0013 34.9 9.0 36 62-97 85-121 (322)
242 2l82_A Designed protein OR32; 53.2 39 0.0013 28.9 7.0 50 383-432 4-53 (162)
243 1fuu_A Yeast initiation factor 52.9 1.1E+02 0.0037 31.9 12.7 76 380-462 88-172 (394)
244 1oyw_A RECQ helicase, ATP-depe 52.5 36 0.0012 38.0 9.1 62 381-444 65-126 (523)
245 1hqc_A RUVB; extended AAA-ATPa 51.3 25 0.00084 36.2 7.0 42 57-98 17-62 (324)
246 3a10_A Response regulator; pho 50.9 37 0.0012 28.3 7.0 92 380-476 24-115 (116)
247 1s2m_A Putative ATP-dependent 50.6 1.4E+02 0.0047 31.2 13.1 76 380-462 88-173 (400)
248 4a2q_A RIG-I, retinoic acid in 50.3 51 0.0018 38.9 10.4 74 381-460 296-379 (797)
249 1j8m_F SRP54, signal recogniti 50.2 22 0.00075 36.7 6.3 33 78-113 102-134 (297)
250 3hws_A ATP-dependent CLP prote 50.2 18 0.00061 38.3 5.8 34 74-113 51-84 (363)
251 2r44_A Uncharacterized protein 49.2 7.6 0.00026 40.5 2.6 25 73-97 45-69 (331)
252 3cmu_A Protein RECA, recombina 47.8 33 0.0011 44.8 8.5 55 64-121 720-776 (2050)
253 3grc_A Sensor protein, kinase; 47.4 59 0.002 28.1 8.1 74 404-477 49-126 (140)
254 1q0u_A Bstdead; DEAD protein, 47.2 1.2E+02 0.0041 28.9 10.9 38 381-418 72-117 (219)
255 3cf2_A TER ATPase, transitiona 46.5 18 0.00063 42.8 5.5 22 75-96 239-260 (806)
256 3cmw_A Protein RECA, recombina 46.1 51 0.0017 42.3 9.7 45 73-120 731-775 (1706)
257 3pfi_A Holliday junction ATP-d 46.0 27 0.00094 36.2 6.4 40 57-96 34-77 (338)
258 2j48_A Two-component sensor ki 46.0 24 0.00081 29.3 4.9 18 459-476 99-116 (119)
259 3dkp_A Probable ATP-dependent 45.8 48 0.0016 32.4 7.9 76 380-461 97-184 (245)
260 1hv8_A Putative ATP-dependent 45.5 2.5E+02 0.0086 28.5 14.0 75 380-461 73-156 (367)
261 2ehv_A Hypothetical protein PH 44.7 1.4E+02 0.0048 28.8 11.2 46 73-121 29-75 (251)
262 2r62_A Cell division protease 44.6 19 0.00065 36.0 4.7 25 74-98 44-68 (268)
263 1wrb_A DJVLGB; RNA helicase, D 44.5 1.6E+02 0.0054 28.7 11.6 76 380-461 99-183 (253)
264 3qxc_A Dethiobiotin synthetase 43.2 15 0.0005 36.9 3.5 25 78-102 26-50 (242)
265 2z0m_A 337AA long hypothetical 43.1 1.9E+02 0.0065 29.0 12.4 73 381-460 56-137 (337)
266 3of5_A Dethiobiotin synthetase 43.0 15 0.00051 36.4 3.5 25 78-102 9-33 (228)
267 3g5j_A Putative ATP/GTP bindin 42.9 31 0.0011 30.2 5.4 53 365-417 73-126 (134)
268 3lte_A Response regulator; str 42.8 42 0.0014 28.7 6.2 29 381-409 6-34 (132)
269 3i42_A Response regulator rece 42.6 36 0.0012 28.9 5.7 96 380-481 26-125 (127)
270 2r8r_A Sensor protein; KDPD, P 42.2 27 0.00093 34.6 5.2 27 75-101 7-33 (228)
271 3cg4_A Response regulator rece 42.1 1E+02 0.0036 26.4 8.9 26 382-407 8-33 (142)
272 2j0s_A ATP-dependent RNA helic 41.9 1.9E+02 0.0065 30.3 12.5 74 380-460 104-187 (410)
273 2db3_A ATP-dependent RNA helic 41.7 1.6E+02 0.0054 31.6 12.0 74 381-461 129-212 (434)
274 3ipz_A Monothiol glutaredoxin- 41.2 97 0.0033 26.3 8.1 57 372-429 9-71 (109)
275 3fgn_A Dethiobiotin synthetase 41.2 17 0.00057 36.7 3.5 25 78-102 31-55 (251)
276 2oap_1 GSPE-2, type II secreti 41.1 24 0.00083 39.5 5.2 38 56-96 245-282 (511)
277 3gk5_A Uncharacterized rhodane 40.5 35 0.0012 29.1 5.1 39 379-417 53-91 (108)
278 2oca_A DAR protein, ATP-depend 40.5 79 0.0027 34.7 9.4 118 299-462 111-235 (510)
279 3b6e_A Interferon-induced heli 40.4 54 0.0018 31.0 7.1 38 381-418 82-123 (216)
280 1ypw_A Transitional endoplasmi 40.3 19 0.00065 42.8 4.4 24 73-96 237-260 (806)
281 2j37_W Signal recognition part 40.3 86 0.0029 34.9 9.5 33 78-113 105-137 (504)
282 3e70_C DPA, signal recognition 40.2 1.6E+02 0.0055 30.6 11.2 32 78-112 133-164 (328)
283 1byi_A Dethiobiotin synthase; 40.1 32 0.0011 33.2 5.4 33 78-113 6-38 (224)
284 3nhm_A Response regulator; pro 40.0 1.1E+02 0.0039 25.8 8.7 96 380-479 26-123 (133)
285 2i4i_A ATP-dependent RNA helic 39.8 1.9E+02 0.0066 30.2 12.2 74 381-461 101-184 (417)
286 4ehx_A Tetraacyldisaccharide 4 39.6 49 0.0017 34.4 7.0 18 83-100 47-64 (315)
287 3eqz_A Response regulator; str 39.2 82 0.0028 26.7 7.6 76 406-481 47-128 (135)
288 3zyw_A Glutaredoxin-3; metal b 38.9 1.2E+02 0.004 26.0 8.3 48 381-428 15-68 (111)
289 1u6t_A SH3 domain-binding glut 38.8 46 0.0016 29.5 5.6 45 384-428 2-53 (121)
290 3i5x_A ATP-dependent RNA helic 38.0 1.1E+02 0.0036 34.1 10.1 76 87-164 321-400 (563)
291 3sqw_A ATP-dependent RNA helic 37.3 96 0.0033 34.8 9.6 73 90-164 273-349 (579)
292 2jgn_A DBX, DDX3, ATP-dependen 37.0 77 0.0026 29.7 7.4 63 97-163 38-103 (185)
293 2hjv_A ATP-dependent RNA helic 36.6 1.3E+02 0.0045 27.2 8.9 55 105-163 35-92 (163)
294 1t5i_A C_terminal domain of A 36.5 1.4E+02 0.0048 27.4 9.2 56 104-163 30-88 (172)
295 3eiq_A Eukaryotic initiation f 36.0 3.3E+02 0.011 28.2 13.3 75 380-460 107-191 (414)
296 3pxg_A Negative regulator of g 35.5 50 0.0017 36.3 6.6 42 58-100 186-227 (468)
297 2b4a_A BH3024; flavodoxin-like 35.4 2.1E+02 0.007 24.3 10.0 90 381-477 39-130 (138)
298 1u0j_A DNA replication protein 35.1 38 0.0013 34.5 5.0 23 75-97 104-127 (267)
299 3nbx_X ATPase RAVA; AAA+ ATPas 34.7 17 0.00058 40.7 2.6 27 71-97 38-64 (500)
300 1ry6_A Internal kinesin; kines 34.7 22 0.00076 37.9 3.4 25 69-93 78-104 (360)
301 4b3f_X DNA-binding protein smu 34.6 99 0.0034 35.4 9.2 51 363-413 215-265 (646)
302 1um8_A ATP-dependent CLP prote 34.5 35 0.0012 36.2 5.0 25 74-98 72-96 (376)
303 3gx8_A Monothiol glutaredoxin- 34.5 1.9E+02 0.0067 25.0 9.2 49 381-429 15-72 (121)
304 4gl2_A Interferon-induced heli 34.3 26 0.00088 40.6 4.2 76 381-462 56-146 (699)
305 4ag6_A VIRB4 ATPase, type IV s 33.7 54 0.0018 34.9 6.4 45 73-120 34-78 (392)
306 2yan_A Glutaredoxin-3; oxidore 33.5 1.3E+02 0.0043 25.1 7.5 59 374-433 10-74 (105)
307 2r2a_A Uncharacterized protein 33.3 15 0.00052 35.6 1.7 22 77-98 8-29 (199)
308 4a2w_A RIG-I, retinoic acid in 33.1 83 0.0028 37.9 8.5 75 381-461 296-380 (936)
309 3trf_A Shikimate kinase, SK; a 32.8 29 0.00099 32.3 3.6 25 74-98 5-29 (185)
310 1e9r_A Conjugal transfer prote 32.7 34 0.0012 37.0 4.6 40 73-115 52-91 (437)
311 1ixz_A ATP-dependent metallopr 32.5 58 0.002 32.1 6.0 22 76-97 51-72 (254)
312 2yhs_A FTSY, cell division pro 32.4 2.1E+02 0.0071 31.8 10.8 31 78-111 297-327 (503)
313 3eaq_A Heat resistant RNA depe 32.3 1.5E+02 0.005 28.4 8.8 55 105-163 31-88 (212)
314 2p6n_A ATP-dependent RNA helic 32.0 1.4E+02 0.0049 28.0 8.5 55 105-163 54-111 (191)
315 1g3q_A MIND ATPase, cell divis 31.9 44 0.0015 32.4 4.9 33 78-113 7-39 (237)
316 2c95_A Adenylate kinase 1; tra 31.9 35 0.0012 31.9 4.1 26 73-98 8-33 (196)
317 1fuk_A Eukaryotic initiation f 31.8 1.8E+02 0.006 26.3 8.9 56 104-163 29-87 (165)
318 3vaa_A Shikimate kinase, SK; s 30.9 34 0.0012 32.5 3.8 26 73-98 24-49 (199)
319 2ykg_A Probable ATP-dependent 30.3 1.3E+02 0.0043 34.6 9.2 75 382-462 62-146 (696)
320 1sky_E F1-ATPase, F1-ATP synth 30.3 1.9E+02 0.0066 31.8 10.0 38 62-100 140-177 (473)
321 1hyq_A MIND, cell division inh 30.1 53 0.0018 32.5 5.3 32 78-112 7-38 (263)
322 3dmn_A Putative DNA helicase; 29.8 2.5E+02 0.0086 25.8 9.7 66 380-463 60-125 (174)
323 3q9l_A Septum site-determining 29.7 50 0.0017 32.5 4.9 32 78-112 7-38 (260)
324 3kto_A Response regulator rece 29.7 52 0.0018 28.4 4.6 29 382-410 7-35 (136)
325 3lda_A DNA repair protein RAD5 29.6 2.7E+02 0.0093 29.7 11.1 40 77-116 181-223 (400)
326 1p9r_A General secretion pathw 29.6 62 0.0021 35.1 6.0 56 51-111 146-201 (418)
327 3eul_A Possible nitrate/nitrit 29.4 1.5E+02 0.0053 25.8 7.9 82 129-216 14-99 (152)
328 1q57_A DNA primase/helicase; d 29.4 44 0.0015 37.0 4.9 49 74-124 242-290 (503)
329 3iij_A Coilin-interacting nucl 29.3 44 0.0015 30.9 4.2 25 74-98 11-35 (180)
330 1in4_A RUVB, holliday junction 28.8 88 0.003 32.4 6.9 41 58-98 31-75 (334)
331 4akg_A Glutathione S-transfera 28.7 63 0.0022 43.6 6.7 62 55-116 904-965 (2695)
332 2q5c_A NTRC family transcripti 28.6 3.3E+02 0.011 25.7 10.5 92 381-480 4-95 (196)
333 2wem_A Glutaredoxin-related pr 28.5 1.7E+02 0.0057 25.4 7.6 48 381-428 19-73 (118)
334 3i32_A Heat resistant RNA depe 28.2 1.7E+02 0.0057 30.0 8.7 55 105-163 28-85 (300)
335 1iy2_A ATP-dependent metallopr 28.1 91 0.0031 31.2 6.7 42 56-97 44-96 (278)
336 3f6p_A Transcriptional regulat 28.0 1.6E+02 0.0054 24.5 7.4 25 404-428 45-69 (120)
337 1rif_A DAR protein, DNA helica 28.0 2E+02 0.0069 28.5 9.4 81 299-416 111-196 (282)
338 2ph1_A Nucleotide-binding prot 27.8 56 0.0019 32.5 4.9 32 78-112 23-54 (262)
339 4e7p_A Response regulator; DNA 27.7 2E+02 0.007 24.9 8.4 83 131-217 21-105 (150)
340 2wul_A Glutaredoxin related pr 27.4 2.6E+02 0.0089 24.3 8.6 50 382-431 20-76 (118)
341 1wik_A Thioredoxin-like protei 27.4 1.6E+02 0.0056 24.7 7.3 53 381-433 14-72 (109)
342 2r2a_A Uncharacterized protein 27.3 36 0.0012 32.8 3.2 40 178-217 87-133 (199)
343 3end_A Light-independent proto 26.9 44 0.0015 34.1 4.1 29 80-111 47-75 (307)
344 2oze_A ORF delta'; para, walke 26.9 44 0.0015 33.9 4.0 37 81-120 44-82 (298)
345 2afh_E Nitrogenase iron protei 26.9 45 0.0015 33.7 4.1 29 80-111 8-36 (289)
346 2ze6_A Isopentenyl transferase 26.8 39 0.0013 33.8 3.5 22 77-98 4-25 (253)
347 1cp2_A CP2, nitrogenase iron p 26.8 39 0.0013 33.6 3.5 29 80-111 7-35 (269)
348 2rjn_A Response regulator rece 26.7 85 0.0029 27.6 5.6 55 381-443 7-61 (154)
349 3foj_A Uncharacterized protein 26.7 55 0.0019 27.2 3.9 37 380-416 55-91 (100)
350 2rb4_A ATP-dependent RNA helic 26.5 1.6E+02 0.0053 27.0 7.6 56 104-163 33-91 (175)
351 1dbw_A Transcriptional regulat 26.4 1.3E+02 0.0043 25.3 6.5 26 383-408 5-30 (126)
352 2wci_A Glutaredoxin-4; redox-a 26.4 2E+02 0.0067 25.7 7.8 50 382-431 35-90 (135)
353 1aky_A Adenylate kinase; ATP:A 26.2 45 0.0015 32.1 3.7 24 75-98 5-28 (220)
354 3fwy_A Light-independent proto 26.1 47 0.0016 34.5 4.1 29 80-111 54-82 (314)
355 3eod_A Protein HNR; response r 26.1 1E+02 0.0035 26.0 5.8 61 381-449 7-68 (130)
356 3dc4_A Kinesin-like protein NO 25.9 43 0.0015 35.3 3.8 25 67-91 86-112 (344)
357 3nwn_A Kinesin-like protein KI 25.9 43 0.0015 35.6 3.7 26 67-92 96-123 (359)
358 1ak2_A Adenylate kinase isoenz 25.9 46 0.0016 32.5 3.8 25 74-98 16-40 (233)
359 3sxu_A DNA polymerase III subu 25.8 67 0.0023 29.5 4.6 80 365-463 23-106 (150)
360 3l9o_A ATP-dependent RNA helic 25.6 1.4E+02 0.0047 36.8 8.7 84 296-416 179-262 (1108)
361 3hix_A ALR3790 protein; rhodan 25.6 82 0.0028 26.5 4.9 39 379-417 50-89 (106)
362 3pxi_A Negative regulator of g 25.6 85 0.0029 36.8 6.6 43 57-100 185-227 (758)
363 3hv2_A Response regulator/HD d 25.6 2.1E+02 0.0073 24.8 8.2 81 131-217 15-97 (153)
364 1kht_A Adenylate kinase; phosp 25.3 48 0.0016 30.7 3.7 24 76-99 5-28 (192)
365 2qmh_A HPR kinase/phosphorylas 25.3 35 0.0012 33.2 2.6 22 75-96 35-56 (205)
366 1g41_A Heat shock protein HSLU 25.1 57 0.002 35.7 4.6 25 74-98 50-74 (444)
367 3ug7_A Arsenical pump-driving 25.0 98 0.0034 32.4 6.4 32 78-112 30-61 (349)
368 3kb2_A SPBC2 prophage-derived 24.8 46 0.0016 30.2 3.4 21 77-97 4-24 (173)
369 2owm_A Nckin3-434, related to 24.6 57 0.0019 35.7 4.5 27 67-93 128-156 (443)
370 2lnd_A De novo designed protei 24.5 2.8E+02 0.0095 22.3 7.9 60 367-427 37-98 (112)
371 3kjh_A CO dehydrogenase/acetyl 24.5 26 0.0009 34.2 1.7 29 80-111 6-34 (254)
372 3iwh_A Rhodanese-like domain p 24.4 44 0.0015 28.4 2.9 37 380-416 55-91 (103)
373 3kht_A Response regulator; PSI 24.4 1.2E+02 0.0042 26.1 6.2 28 381-408 5-32 (144)
374 3eme_A Rhodanese-like domain p 24.3 54 0.0019 27.4 3.5 37 380-416 55-91 (103)
375 3cnb_A DNA-binding response re 24.1 2.4E+02 0.0083 23.8 8.1 76 404-479 53-131 (143)
376 1bg2_A Kinesin; motor protein, 24.1 52 0.0018 34.4 3.9 27 67-93 69-97 (325)
377 1qkk_A DCTD, C4-dicarboxylate 24.0 87 0.003 27.6 5.1 55 381-443 3-57 (155)
378 3kht_A Response regulator; PSI 24.0 2.2E+02 0.0076 24.3 7.8 83 131-216 6-91 (144)
379 1goj_A Kinesin, kinesin heavy 23.9 53 0.0018 34.8 4.0 28 66-93 71-100 (355)
380 3hv2_A Response regulator/HD d 23.8 91 0.0031 27.4 5.2 31 381-411 14-44 (153)
381 3i42_A Response regulator rece 23.8 2.8E+02 0.0095 22.9 8.3 85 131-220 4-91 (127)
382 3cwq_A Para family chromosome 23.8 69 0.0024 30.7 4.6 42 78-123 5-48 (209)
383 1x88_A Kinesin-like protein KI 23.8 52 0.0018 34.9 3.9 26 67-92 80-107 (359)
384 3k9g_A PF-32 protein; ssgcid, 23.7 48 0.0016 33.0 3.5 39 78-120 32-72 (267)
385 2x8a_A Nuclear valosin-contain 23.7 39 0.0013 34.2 2.8 22 75-96 45-66 (274)
386 2rhm_A Putative kinase; P-loop 23.6 45 0.0015 31.0 3.1 23 76-98 7-29 (193)
387 2qxy_A Response regulator; reg 23.6 1.1E+02 0.0039 26.2 5.8 92 381-480 28-123 (142)
388 3gbj_A KIF13B protein; kinesin 23.6 59 0.002 34.4 4.3 26 67-92 84-111 (354)
389 1v8k_A Kinesin-like protein KI 23.6 40 0.0014 36.5 3.0 27 67-93 146-174 (410)
390 1k68_A Phytochrome response re 23.6 2.5E+02 0.0086 23.5 8.0 81 131-217 3-96 (140)
391 3zq6_A Putative arsenical pump 23.5 73 0.0025 33.0 5.0 33 78-113 18-50 (324)
392 3cio_A ETK, tyrosine-protein k 23.5 79 0.0027 32.3 5.2 30 80-112 111-140 (299)
393 2wbe_C Bipolar kinesin KRP-130 23.5 59 0.002 34.7 4.3 26 67-92 92-119 (373)
394 2y65_A Kinesin, kinesin heavy 23.5 54 0.0018 34.9 3.9 26 67-92 76-103 (365)
395 3t8y_A CHEB, chemotaxis respon 23.4 2.2E+02 0.0075 25.3 7.9 81 131-217 26-109 (164)
396 1nks_A Adenylate kinase; therm 23.3 49 0.0017 30.7 3.3 23 77-99 4-26 (194)
397 2jtq_A Phage shock protein E; 23.3 96 0.0033 24.7 4.7 37 379-416 39-76 (85)
398 2lqo_A Putative glutaredoxin R 23.2 1.7E+02 0.0058 24.1 6.3 56 383-439 5-61 (92)
399 3fmo_B ATP-dependent RNA helic 23.2 2.7E+02 0.0093 28.1 9.3 71 381-461 162-244 (300)
400 2rdm_A Response regulator rece 23.2 1.5E+02 0.0051 24.9 6.3 19 461-479 106-124 (132)
401 1tmy_A CHEY protein, TMY; chem 23.0 1E+02 0.0034 25.6 5.1 15 461-475 104-118 (120)
402 2qv0_A Protein MRKE; structura 23.0 1.5E+02 0.0051 25.4 6.4 26 382-407 10-36 (143)
403 2ius_A DNA translocase FTSK; n 22.9 86 0.0029 35.0 5.6 42 74-115 167-209 (512)
404 2v3c_C SRP54, signal recogniti 22.9 69 0.0024 34.9 4.8 33 77-112 102-134 (432)
405 2jaq_A Deoxyguanosine kinase; 22.7 54 0.0019 30.7 3.5 22 77-98 3-24 (205)
406 1zuh_A Shikimate kinase; alpha 22.6 54 0.0018 29.9 3.4 23 76-98 9-31 (168)
407 1qhx_A CPT, protein (chloramph 22.6 44 0.0015 30.7 2.8 20 77-96 6-25 (178)
408 3a8t_A Adenylate isopentenyltr 22.6 43 0.0015 35.3 2.9 21 76-96 42-62 (339)
409 3lre_A Kinesin-like protein KI 22.5 51 0.0018 34.9 3.5 26 67-92 97-124 (355)
410 1zak_A Adenylate kinase; ATP:A 22.5 59 0.002 31.3 3.8 24 75-98 6-29 (222)
411 4a14_A Kinesin, kinesin-like p 22.4 59 0.002 34.3 4.0 26 67-92 75-102 (344)
412 1wv9_A Rhodanese homolog TT165 22.4 53 0.0018 26.9 3.0 35 382-416 54-88 (94)
413 2yxb_A Coenzyme B12-dependent 22.3 2E+02 0.007 26.3 7.3 49 380-428 17-69 (161)
414 3gl9_A Response regulator; bet 22.2 2.9E+02 0.01 22.8 8.1 80 132-216 4-86 (122)
415 3b6u_A Kinesin-like protein KI 22.2 55 0.0019 34.9 3.7 27 67-93 93-121 (372)
416 3vkg_A Dynein heavy chain, cyt 22.2 90 0.0031 42.8 6.4 64 53-116 885-948 (3245)
417 2gk6_A Regulator of nonsense t 22.2 2.3E+02 0.0079 32.2 9.3 51 363-413 205-256 (624)
418 3cmw_A Protein RECA, recombina 22.1 1.9E+02 0.0065 37.2 9.1 86 78-190 1435-1521(1706)
419 1t1v_A SH3BGRL3, SH3 domain-bi 22.0 1.8E+02 0.0062 23.5 6.3 46 383-428 3-55 (93)
420 2nr8_A Kinesin-like protein KI 22.0 56 0.0019 34.7 3.7 26 67-92 95-122 (358)
421 2qr3_A Two-component system re 21.9 2.1E+02 0.007 24.2 7.1 81 131-216 4-90 (140)
422 3bfv_A CAPA1, CAPB2, membrane 21.9 84 0.0029 31.6 4.9 29 80-111 89-117 (271)
423 2vvg_A Kinesin-2; motor protei 21.9 52 0.0018 34.8 3.4 26 67-92 81-108 (350)
424 2yvu_A Probable adenylyl-sulfa 21.9 57 0.0019 30.4 3.4 24 77-100 16-39 (186)
425 3cg4_A Response regulator rece 21.8 2.1E+02 0.0073 24.3 7.2 82 131-217 8-92 (142)
426 3cm0_A Adenylate kinase; ATP-b 21.7 59 0.002 30.0 3.5 22 76-97 6-27 (186)
427 3to5_A CHEY homolog; alpha(5)b 21.6 2.8E+02 0.0094 24.5 7.9 26 382-407 13-38 (134)
428 2qxy_A Response regulator; reg 21.6 1.9E+02 0.0066 24.6 6.8 79 131-216 5-85 (142)
429 2zfi_A Kinesin-like protein KI 21.5 62 0.0021 34.4 3.9 26 67-92 81-108 (366)
430 3hdg_A Uncharacterized protein 21.5 1.6E+02 0.0055 25.0 6.3 17 461-477 108-124 (137)
431 3n53_A Response regulator rece 21.4 3.7E+02 0.013 22.7 10.1 73 405-477 46-121 (140)
432 4a4z_A Antiviral helicase SKI2 21.3 2.2E+02 0.0076 34.5 9.3 82 298-416 36-119 (997)
433 3ea0_A ATPase, para family; al 20.8 72 0.0025 30.9 4.1 33 78-112 9-41 (245)
434 3crm_A TRNA delta(2)-isopenten 20.8 48 0.0016 34.7 2.8 22 76-97 7-28 (323)
435 2rjn_A Response regulator rece 20.8 2.1E+02 0.0071 24.9 7.0 83 130-217 7-90 (154)
436 2xj4_A MIPZ; replication, cell 20.7 76 0.0026 32.0 4.4 40 80-122 11-53 (286)
437 1y63_A LMAJ004144AAA protein; 20.7 63 0.0022 30.1 3.5 23 74-96 10-32 (184)
438 1t5c_A CENP-E protein, centrom 20.7 54 0.0018 34.7 3.2 26 67-92 69-96 (349)
439 3nwj_A ATSK2; P loop, shikimat 20.7 83 0.0028 31.4 4.5 24 74-97 48-71 (250)
440 1via_A Shikimate kinase; struc 20.6 65 0.0022 29.6 3.5 22 76-97 6-27 (175)
441 2fz4_A DNA repair protein RAD2 20.5 2.6E+02 0.0088 27.2 8.2 50 364-416 119-169 (237)
442 2ga8_A Hypothetical 39.9 kDa p 20.5 1.1E+02 0.0039 32.3 5.7 22 77-98 27-48 (359)
443 1f9v_A Kinesin-like protein KA 20.5 82 0.0028 33.2 4.6 28 65-92 74-103 (347)
444 1qf9_A UMP/CMP kinase, protein 20.4 58 0.002 30.1 3.2 21 77-97 9-29 (194)
445 1tev_A UMP-CMP kinase; ploop, 20.4 64 0.0022 29.8 3.5 22 76-97 5-26 (196)
446 2heh_A KIF2C protein; kinesin, 20.3 54 0.0018 35.2 3.1 27 67-93 126-154 (387)
447 3cz5_A Two-component response 20.2 3.5E+02 0.012 23.3 8.4 81 131-216 6-89 (153)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-82 Score=768.38 Aligned_cols=491 Identities=45% Similarity=0.777 Sum_probs=416.3
Q ss_pred ccCCCCCcCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHH
Q 004103 44 VTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINE 123 (773)
Q Consensus 44 ~~~~P~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E 123 (773)
...+|+.+.+++|||||++|++||+..+.++.+|||||+||+|||+|+|+++.+++......+|+|||||.+++.||..|
T Consensus 225 ~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E 304 (800)
T 3mwy_W 225 LSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDT 304 (800)
T ss_dssp CSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHH
T ss_pred cccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHH
Confidence 34667777789999999999999999999999999999999999999999999998877888999999999999999999
Q ss_pred HHhhcCCceEEEecCChhHHHHHHHHHH--------hhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhh
Q 004103 124 FSTWAPSIAAVVYDGRPDERKAMREEFF--------SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC 195 (773)
Q Consensus 124 ~~k~~p~~~v~~~~g~~~~r~~~~~~~~--------~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s 195 (773)
|.+|+|++.+++|.|....+..+....+ .....++|+||||+++.++...+..+.|++|||||||++||..+
T Consensus 305 ~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s 384 (800)
T 3mwy_W 305 FEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAES 384 (800)
T ss_dssp HHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSS
T ss_pred HHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchh
Confidence 9999999999999999988877655332 12357899999999999999999999999999999999999999
Q ss_pred HHHHHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhh
Q 004103 196 ALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIR 275 (773)
Q Consensus 196 ~~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~ 275 (773)
++++++..+.+.+||+|||||++|++.|||++++||.|+.|.....|.-. .........+..|+.+++
T Consensus 385 ~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~------------~~~~~~~~~~~~L~~~l~ 452 (800)
T 3mwy_W 385 SLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFE------------NQDEEQEEYIHDLHRRIQ 452 (800)
T ss_dssp HHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------------------CCTTHHHHHHHHHHHTTG
T ss_pred HHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhccc------------ccchhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999876555311 112234456788999999
Q ss_pred hhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccC-CCccchHHHHHHHHHHHhCCCCcccccccc
Q 004103 276 PFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTG-TGKSKSLQNLSMQLRKCCNHPYLFVGEYNM 354 (773)
Q Consensus 276 p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~-~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~ 354 (773)
|+++||++.++...||++.+.++.|+|++.|+.+|+.+.......+..+ .+....+.+++++|+++|+||+++......
T Consensus 453 p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~ 532 (800)
T 3mwy_W 453 PFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEER 532 (800)
T ss_dssp GGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHH
T ss_pred HHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHH
Confidence 9999999999999999999999999999999999999988765544332 234457899999999999999998653211
Q ss_pred -------------hhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHH
Q 004103 355 -------------WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERG 421 (773)
Q Consensus 355 -------------~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~ 421 (773)
.....++..|+|+.+|.++|..+...|+|+||||+++.++++|+++|...|+++.+++|+++.++|+
T Consensus 533 ~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~ 612 (800)
T 3mwy_W 533 VLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRR 612 (800)
T ss_dssp HCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHH
T ss_pred HHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHH
Confidence 1134567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHH
Q 004103 422 TLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILE 501 (773)
Q Consensus 422 ~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~ 501 (773)
+++++|++++++.++||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++.+|+|++|++
T Consensus 613 ~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~ 692 (800)
T 3mwy_W 613 ISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLE 692 (800)
T ss_dssp HHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHH
T ss_pred HHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHH
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHcCccCCCCC---HHHHHHHHHHHHHhccCCCCCC
Q 004103 502 RAKQKMGIDAKVIQAGLFNTTST---AQDRREMLKEIMRRGTSSLGTD 546 (773)
Q Consensus 502 ~~~~K~~l~~~vi~~g~~~~~~~---~~~~~~~l~~i~~~~~~~~~~~ 546 (773)
++.+|+.++.++|+.|..+.... .....+.|.+|++.|+..+..+
T Consensus 693 ~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~~~~~~ 740 (800)
T 3mwy_W 693 RARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTA 740 (800)
T ss_dssp HHHHHTTSCC----------------CCCCHHHHHHHHSSCSSSSCCS
T ss_pred HHHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHHcchHhhhhc
Confidence 99999999999999876544221 0112345777888887765443
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4e-75 Score=687.40 Aligned_cols=465 Identities=34% Similarity=0.556 Sum_probs=395.1
Q ss_pred CCchHHHHHHHHHHHHhh-----cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC----CCCEEEEeCCcchHHHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLF-----NNNLNGILADEMGLGKTIQTIALIAYLLENKGV----TGPHVIVAPKAVLPNWINEF 124 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~-----~~~~~gILademGlGKTi~aiali~~l~~~~~~----~gp~LIVvP~sll~qW~~E~ 124 (773)
..|||||.+|+.||+..+ .++.+|||||+||+|||+|+|+++..+....+. .+++|||||.+++.||..||
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~ 133 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHH
Confidence 689999999999998765 456788999999999999999999998876532 34699999999999999999
Q ss_pred HhhcCC-ceEEEec-CChhHHHHHHHHHHhh---cCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHH
Q 004103 125 STWAPS-IAAVVYD-GRPDERKAMREEFFSE---RGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAK 199 (773)
Q Consensus 125 ~k~~p~-~~v~~~~-g~~~~r~~~~~~~~~~---~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~ 199 (773)
.+|+|. +.++.+. |....+......+... ...++|+|+||+++..+...+....|++||+||||++||..++.++
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~ 213 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYL 213 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHH
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHH
Confidence 999975 5555554 4444433333332221 1257899999999999888888899999999999999999999999
Q ss_pred HHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHH---HHHHHHHHHhhhhh
Q 004103 200 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEE---QLLIIRRLHHVIRP 276 (773)
Q Consensus 200 ~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~---~~~~~~~L~~~L~p 276 (773)
++..+.+.+||+|||||++|++.|||++++|+.|+.+++...|..+|..|+........+..+ ....+..|+.++.|
T Consensus 214 al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 293 (644)
T 1z3i_X 214 ALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNR 293 (644)
T ss_dssp HHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887654443333322 33457789999999
Q ss_pred hhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCC-ccchHHHHHHHHHHHhCCCCcccccccc-
Q 004103 277 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTG-KSKSLQNLSMQLRKCCNHPYLFVGEYNM- 354 (773)
Q Consensus 277 ~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~-~~~~~~~~~~~Lrk~~~hP~l~~~~~~~- 354 (773)
|++||++.++...||++.+.++.|+|++.|+.+|+.+............+ ........++.|+++|+||.++......
T Consensus 294 ~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~ 373 (644)
T 1z3i_X 294 CLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTG 373 (644)
T ss_dssp HEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHT
T ss_pred HHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998765433221111 2345667788999999999987431100
Q ss_pred --------------hh-hHHHHhhcchHHHHHHHHHHhhh-cCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHH
Q 004103 355 --------------WR-KEEIIRASGKFELLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTE 418 (773)
Q Consensus 355 --------------~~-~~~l~~~s~K~~~L~~ll~~l~~-~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~ 418 (773)
+. .......|+|+..|..++..+.. .++|+||||+++.++++|+.+|...|+.+.++||+++.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~ 453 (644)
T 1z3i_X 374 EEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIK 453 (644)
T ss_dssp CTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHH
T ss_pred cchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHH
Confidence 00 00112458999999999998864 589999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHH
Q 004103 419 ERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEV 498 (773)
Q Consensus 419 eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~ 498 (773)
+|++++++|++++...++||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++.+|+||+
T Consensus 454 ~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~ 533 (644)
T 1z3i_X 454 KRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEK 533 (644)
T ss_dssp HHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHH
Confidence 99999999999887778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHcCc
Q 004103 499 ILERAKQKMGIDAKVIQAGL 518 (773)
Q Consensus 499 i~~~~~~K~~l~~~vi~~g~ 518 (773)
|++++..|..+...|++++.
T Consensus 534 i~~~~~~K~~l~~~v~~~~~ 553 (644)
T 1z3i_X 534 ILQRQAHKKALSSCVVDEEQ 553 (644)
T ss_dssp HHHHHHHHHHTSCCCCSCSS
T ss_pred HHHHHHHHHHHHHHHhcCcc
Confidence 99999999999888887653
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.4e-69 Score=621.28 Aligned_cols=442 Identities=31% Similarity=0.570 Sum_probs=384.1
Q ss_pred CCCcCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhh
Q 004103 48 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 127 (773)
Q Consensus 48 P~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~ 127 (773)
|..+ ..+|+|||.+|+.|+...+..+.+|||||+||+|||+++++++..+... +..+++|||||.+++.||..||.+|
T Consensus 31 p~~~-~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 31 PYNI-KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-NELTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CCSC-SSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-TCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred Chhh-hccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc-CCCCCEEEEccHHHHHHHHHHHHHH
Confidence 4444 3689999999999999888888999999999999999999999988765 4456999999999999999999999
Q ss_pred cCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccc
Q 004103 128 APSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ 207 (773)
Q Consensus 128 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~ 207 (773)
+|...+.++.|.... .....++|+|+||+.+.++.. +....|++|||||||+++|..++.++++..+.+.
T Consensus 109 ~~~~~v~~~~g~~~~---------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~ 178 (500)
T 1z63_A 109 APHLRFAVFHEDRSK---------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSK 178 (500)
T ss_dssp CTTSCEEECSSSTTS---------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEE
T ss_pred CCCceEEEEecCchh---------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccC
Confidence 999999999887632 112568999999999988765 7788999999999999999999999999999999
Q ss_pred eEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhH--
Q 004103 208 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE-- 285 (773)
Q Consensus 208 ~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~d-- 285 (773)
++|+|||||++|++.|+|++++|+.|+.+++...|...|..++.... ......|+.++.|+++||++.+
T Consensus 179 ~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~---------~~~~~~l~~~l~~~~lrr~k~~~~ 249 (500)
T 1z63_A 179 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD---------NMAKEELKAIISPFILRRTKYDKA 249 (500)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC---------HHHHHHHHHHHTTTEECCCTTCHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc---------HHHHHHHHHHHhhHeeeecccccc
Confidence 99999999999999999999999999999999999998887765421 2235678899999999999876
Q ss_pred HhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCC--ccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhh
Q 004103 286 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTG--KSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 363 (773)
Q Consensus 286 v~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~--~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~ 363 (773)
+...||++.+..+.++|++.|..+|+.+.......+....+ ....+...++.|+++|+||.+...... ....
T Consensus 250 ~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~------~~~~ 323 (500)
T 1z63_A 250 IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQ------SVRR 323 (500)
T ss_dssp HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCC------CSTT
T ss_pred hhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccc------hhhc
Confidence 66789999999999999999999999987765443332221 223466778899999999988764321 2356
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
++|+..+.+++..+...++|+||||+++.+++.|..+|... |+.+..++|+++.++|.+++++|++++. ..++|+||+
T Consensus 324 s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~-~~vil~st~ 402 (500)
T 1z63_A 324 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPS-VKFIVLSVK 402 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTT-CCCCEEECC
T ss_pred chhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCC-CCEEEEecc
Confidence 89999999999999889999999999999999999999885 9999999999999999999999998633 346899999
Q ss_pred cccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHHHHcC
Q 004103 443 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG 517 (773)
Q Consensus 443 agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi~~g 517 (773)
++|+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++.+|+|+.|++++..|..+...+++++
T Consensus 403 ~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~ 477 (500)
T 1z63_A 403 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG 477 (500)
T ss_dssp CC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGST
T ss_pred cccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988888765
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.3e-50 Score=493.32 Aligned_cols=429 Identities=20% Similarity=0.258 Sum_probs=327.7
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceE
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAA 133 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v 133 (773)
.+|+|||.+++.|++... +.++||||+||+|||+++++++..+... +..+++|||||.+++.||..||.+|+ +..+
T Consensus 152 ~~LrpyQ~eav~~~l~~~--~~~~LLad~tGlGKTi~Ai~~i~~l~~~-g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v 227 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRH--APRVLLADEVGLGKTIEAGMILHQQLLS-GAAERVLIIVPETLQHQWLVEMLRRF-NLRF 227 (968)
T ss_dssp SCCCHHHHHHHHHHHHSS--SCEEEECCCTTSCHHHHHHHHHHHHHHT-SSCCCEEEECCTTTHHHHHHHHHHHS-CCCC
T ss_pred CCCcHHHHHHHHHHHHhc--CCCEEEECCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEeCHHHHHHHHHHHHHHh-CCCE
Confidence 589999999999998633 5678999999999999999999988875 44568999999999999999999888 6777
Q ss_pred EEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhH---HHHhhcCeeEEEEccccccCChhhH---HHHHHHcc--c
Q 004103 134 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR---QYLKKVQWIYMIVDEGHRLKNHECA---LAKTISGY--Q 205 (773)
Q Consensus 134 ~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~---~~l~~~~~~~vIiDEaH~lkn~~s~---~~~~l~~~--~ 205 (773)
.++.|....... .........++|+|+||+.+.++. ..+....|++|||||||+++|..+. .++.+..+ .
T Consensus 228 ~v~~~~~~~~~~--~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~ 305 (968)
T 3dmq_A 228 ALFDDERYAEAQ--HDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH 305 (968)
T ss_dssp EECCHHHHHHHH--HTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTT
T ss_pred EEEccchhhhhh--hhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhc
Confidence 777765433211 111122346799999999998753 4577779999999999999986644 46677666 6
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhccccc---------cc------CC----ccC--------
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFK---------DR------GQ----VAL-------- 258 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~---------~~------~~----~~~-------- 258 (773)
+.++|+|||||++|++.|+|++++|+.|..|.+...|..++..... .. .. ..+
T Consensus 306 ~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l 385 (968)
T 3dmq_A 306 VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPL 385 (968)
T ss_dssp CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTT
T ss_pred CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHH
Confidence 7889999999999999999999999999999999988766432110 00 00 000
Q ss_pred ----------ChHHHHHHHHHHHhhh-----hhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhccccccc
Q 004103 259 ----------TDEEQLLIIRRLHHVI-----RPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT 323 (773)
Q Consensus 259 ----------~~~~~~~~~~~L~~~L-----~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~ 323 (773)
...... ..+..++ ...++|+.+..+. .+|.+....+.+++++.+...|.............
T Consensus 386 ~~~~~~~~~~~~~~~~---~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 386 LQAANSDSEDAQSARQ---ELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp GGGTCCCSSCSTTTHH---HHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred HhcccchhhhhHHHHH---HHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 000011 1122222 3345566665554 68999999999999999999987654432211111
Q ss_pred CCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHh
Q 004103 324 GTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL 403 (773)
Q Consensus 324 ~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~ 403 (773)
.. ...+.+|......... .....+..+.|+..|.+++.. ..+.++||||+++.+++.|...|..
T Consensus 462 ----~~---------~~~~l~pe~~~~~l~~-~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~ 525 (968)
T 3dmq_A 462 ----DR---------ARDMLYPERIYQEFEG-DNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLRE 525 (968)
T ss_dssp ----GG---------THHHHCSGGGTTTTTS-SSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHT
T ss_pred ----HH---------HhhhcChHHHHHHhhh-hhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 00 0111223222111110 001123567899999999987 5688999999999999999999995
Q ss_pred -CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcC
Q 004103 404 -NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKK 482 (773)
Q Consensus 404 -~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k 482 (773)
.|+++..+||+++..+|..+++.|++++..+ .+||+|+++++|||++.|++||+||+||||..+.|++||++|+||++
T Consensus 526 ~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~-~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~ 604 (968)
T 3dmq_A 526 REGIRAAVFHEGMSIIERDRAAAWFAEEDTGA-QVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAH 604 (968)
T ss_dssp TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSC-EEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCS
T ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcc-cEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCc
Confidence 5999999999999999999999999976333 36889999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeCCCHHHHHHHHHHHHHhH
Q 004103 483 EVRVFVLVSVGSIEEVILERAKQKMGI 509 (773)
Q Consensus 483 ~V~V~rLi~~~tiEe~i~~~~~~K~~l 509 (773)
.|.||++++.+|+|+.|+..+.+|..+
T Consensus 605 ~v~v~~~~~~~t~ee~i~~~~~~k~~~ 631 (968)
T 3dmq_A 605 DIQIHVPYLEKTAQSVLVRWYHEGLDA 631 (968)
T ss_dssp CCEEEEEEETTSHHHHHHHHHHHTTCC
T ss_pred eEEEEEecCCChHHHHHHHHHHhCCCc
Confidence 999999999999999999999888765
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.7e-46 Score=421.87 Aligned_cols=429 Identities=18% Similarity=0.194 Sum_probs=291.7
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc--CC
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--PS 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~--p~ 130 (773)
.+|+|||.+++.|++. + ++|++++||+|||+++++++..+.. ...+++|||||. +++.||..++.+|+ |.
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 4799999999999885 3 8999999999999999999888776 335689999998 89999999999998 56
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCChhh--HHHHHH-Hccc
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHEC--ALAKTI-SGYQ 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn~~s--~~~~~l-~~~~ 205 (773)
..+.++.|......... .. ..++|+|+||+.+..... .+....|++|||||||++++... .+...+ ....
T Consensus 81 ~~v~~~~g~~~~~~~~~--~~---~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~ 155 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK--AW---ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAK 155 (494)
T ss_dssp GGEEEECSCSCHHHHHH--HH---HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCS
T ss_pred hheEEeeCCcchhhhhh--hc---cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCC
Confidence 68888988765443211 11 357899999999987644 34456899999999999986432 222222 2235
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCC---CCChHhH-HHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhh
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTI---FNSVENF-EEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 281 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~---~~~~~~f-~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR 281 (773)
..++|+|||||. ++..+++.+++++.+.. ......+ ..++.............. ....+...+.+++.++
T Consensus 156 ~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 229 (494)
T 1wp9_A 156 NPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPE-----IYKEVRKLLREMLRDA 229 (494)
T ss_dssp SCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCH-----HHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcH-----HHHHHHHHHHHHHHHH
Confidence 788999999999 66777777776664432 2221111 111111111111111221 2456778889999998
Q ss_pred hhhHHhhcCCCceeEEEEecCCHH-----HHHHHHHHHHhcccccc-----------------cCCCccchHHHHHHHHH
Q 004103 282 KKDEVEKYLPGKSQVILKCDMSAW-----QKVYYQQVTDVGRVGLD-----------------TGTGKSKSLQNLSMQLR 339 (773)
Q Consensus 282 ~k~dv~~~LP~k~e~~v~~~~s~~-----q~~~Y~~i~~~~~~~~~-----------------~~~~~~~~~~~~~~~Lr 339 (773)
.+......+..... ...+.. ...++..+......... ........+...+..+.
T Consensus 230 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (494)
T 1wp9_A 230 LKPLAETGLLESSS----PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLY 305 (494)
T ss_dssp HHHHHHHTSSSCCC----TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccccccC----CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Confidence 88766544332211 111211 11111111110000000 00001112233333444
Q ss_pred HHhCCCCccccc--ccchhh----------HHHHhhcchHHHHHHHHHHhh--hcCCcEEEEeecHHHHHHHHHHHHhCC
Q 004103 340 KCCNHPYLFVGE--YNMWRK----------EEIIRASGKFELLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIYLKLND 405 (773)
Q Consensus 340 k~~~hP~l~~~~--~~~~~~----------~~l~~~s~K~~~L~~ll~~l~--~~g~kvLIFsq~~~~ld~L~~~L~~~g 405 (773)
..+.|+...... ...... ......++|+..|.++|.... ..++++||||+++.+++.+..+|...|
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~ 385 (494)
T 1wp9_A 306 EEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG 385 (494)
T ss_dssp HHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT
T ss_pred HhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcC
Confidence 444442111000 000000 011146789999999999876 568999999999999999999999999
Q ss_pred CeEEEEcC--------CCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhh
Q 004103 406 FKFLRLDG--------STKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHR 477 (773)
Q Consensus 406 ~~~~~i~G--------~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~R 477 (773)
+.+..++| +++.++|.++++.|+++... +|++|+++++||||+.|++||+||++|||..+.||+||+||
T Consensus 386 ~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R 462 (494)
T 1wp9_A 386 IKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR 462 (494)
T ss_dssp CCEEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCS
T ss_pred CCcEEEeccccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccC
Confidence 99999999 99999999999999988765 79999999999999999999999999999999999999999
Q ss_pred cCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHH
Q 004103 478 IGQKKEVRVFVLVSVGSIEEVILERAKQKMGID 510 (773)
Q Consensus 478 iGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~ 510 (773)
.|| +.+|+|++++|+|+.++.++..|..++
T Consensus 463 ~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~ 492 (494)
T 1wp9_A 463 HMP---GRVIILMAKGTRDEAYYWSSRQKEKIM 492 (494)
T ss_dssp CCC---SEEEEEEETTSHHHHHHHHCC------
T ss_pred CCC---ceEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 998 899999999999999999999887664
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=5.3e-43 Score=399.17 Aligned_cols=373 Identities=18% Similarity=0.208 Sum_probs=267.8
Q ss_pred CCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCC
Q 004103 52 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS 130 (773)
Q Consensus 52 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~ 130 (773)
.+.+|+|||.+++.+++. +.++||+++||+|||++++.++..+ .+++|||||. +++.||..+|.+| +
T Consensus 90 ~~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~ 157 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--G 157 (472)
T ss_dssp CCCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--C
T ss_pred CCCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--C
Confidence 356899999999998773 5569999999999999998888765 3589999999 9999999999995 4
Q ss_pred ce-EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccceE
Q 004103 131 IA-AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRR 209 (773)
Q Consensus 131 ~~-v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~r 209 (773)
.. +.++.|... ...+|+|+||+.+......+. ..|++|||||||++.+.... ..+..+...++
T Consensus 158 ~~~v~~~~g~~~-------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~ 221 (472)
T 2fwr_A 158 EEYVGEFSGRIK-------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSIAPFR 221 (472)
T ss_dssp GGGEEEBSSSCB-------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCCCSEE
T ss_pred CcceEEECCCcC-------------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHHhcCCCeE
Confidence 56 888887653 356899999999988766553 35999999999999887644 45567788999
Q ss_pred EEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHHhh-
Q 004103 210 LLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEK- 288 (773)
Q Consensus 210 llLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~- 288 (773)
|+|||||..++..+ ..+..++.|.+.+....++..
T Consensus 222 l~lSATp~~~~~~~--------------------------------------------~~l~~~~~~~~~~~~~~~l~~~ 257 (472)
T 2fwr_A 222 LGLTATFEREDGRH--------------------------------------------EILKEVVGGKVFELFPDSLAGK 257 (472)
T ss_dssp EEEESCCCCTTSGG--------------------------------------------GSHHHHTCCEEEECCHHHHTSC
T ss_pred EEEecCccCCCCHH--------------------------------------------HHHHHHhCCeEeecCHHHHhcC
Confidence 99999998654211 012334455555555555533
Q ss_pred cCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCc---cchHHHHHHHHHHHhCCCCcccccc-cchhhHHHHhhc
Q 004103 289 YLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGK---SKSLQNLSMQLRKCCNHPYLFVGEY-NMWRKEEIIRAS 364 (773)
Q Consensus 289 ~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~---~~~~~~~~~~Lrk~~~hP~l~~~~~-~~~~~~~l~~~s 364 (773)
.+++.....+.+++++.+...|+.+.......+...... ...+...+ ......+....... ...........+
T Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (472)
T 2fwr_A 258 HLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIV---MASGYDERAYEALRAWEEARRIAFNSK 334 (472)
T ss_dssp CCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTT---TTTCCSSSSSTTTHHHHHHHHHHHSCS
T ss_pred cCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHH---HHhccCHHHHHHHHHHHHHHHHhhcCh
Confidence 367777778899999999988876654332222111000 00000000 00000000000000 000011123467
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
.|+..|.+++.. ..++++||||++...++.+...|. +..++|+++..+|.++++.|+++..+ +|++|+++
T Consensus 335 ~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~---vLv~T~~~ 404 (472)
T 2fwr_A 335 NKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR---AIVSSQVL 404 (472)
T ss_dssp HHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS---BCBCSSCC
T ss_pred HHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCC---EEEEcCch
Confidence 899999999987 468899999999999999999884 45689999999999999999998776 78999999
Q ss_pred cccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCc-CeEEEEEEEeCCCHHHHHHHHHHHHHhH
Q 004103 445 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQK-KEVRVFVLVSVGSIEEVILERAKQKMGI 509 (773)
Q Consensus 445 g~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~-k~V~V~rLi~~~tiEe~i~~~~~~K~~l 509 (773)
++|||++.+++||++|++|||..+.|++||++|.||. +.|.||.|++++|+|+.+..+.++|..+
T Consensus 405 ~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 405 DEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp CSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC--------------
T ss_pred hcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999998 7899999999999999999988877654
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=1.4e-41 Score=358.62 Aligned_cols=233 Identities=28% Similarity=0.451 Sum_probs=180.5
Q ss_pred hhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCC--ccchHHHHHHHHHHHhCCCCcccccccch
Q 004103 278 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTG--KSKSLQNLSMQLRKCCNHPYLFVGEYNMW 355 (773)
Q Consensus 278 ~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~--~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~ 355 (773)
-+||+|++|..+||++.+.+++|+||+.|+++|+.+.......+....+ ....+.+.+++||++|+||+++....
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~--- 89 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE--- 89 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC---
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCc---
Confidence 5799999999999999999999999999999999998765444332221 22356778899999999999986321
Q ss_pred hhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHhhcCCCCCc
Q 004103 356 RKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-DFKFLRLDGSTKTEERGTLLKQFNAPDSPY 434 (773)
Q Consensus 356 ~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~ 434 (773)
..+..++|+..|.++|..+...++|+||||+++.+++.|..+|... |+++.+++|+++.++|.++++.|+++.. .
T Consensus 90 ---~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~-~ 165 (271)
T 1z5z_A 90 ---QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPS-V 165 (271)
T ss_dssp ---CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTT-C
T ss_pred ---cccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCC-C
Confidence 1246799999999999999889999999999999999999999885 9999999999999999999999998633 4
Q ss_pred EEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHHH
Q 004103 435 FMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVI 514 (773)
Q Consensus 435 ~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi 514 (773)
.|||+||++||+||||+.|++||+||+||||..+.||+||+||+||+++|.||+|++.+|+||+|++++..|..+...++
T Consensus 166 ~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~ 245 (271)
T 1z5z_A 166 KFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDII 245 (271)
T ss_dssp CEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGG
T ss_pred CEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcC
Q 004103 515 QAG 517 (773)
Q Consensus 515 ~~g 517 (773)
+++
T Consensus 246 ~~~ 248 (271)
T 1z5z_A 246 SSG 248 (271)
T ss_dssp GGT
T ss_pred ccC
Confidence 865
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.8e-39 Score=372.20 Aligned_cols=434 Identities=17% Similarity=0.198 Sum_probs=227.4
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--CCCEEEEeCC-cchHHHHHHHHhhcC-
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV--TGPHVIVAPK-AVLPNWINEFSTWAP- 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~--~gp~LIVvP~-sll~qW~~E~~k~~p- 129 (773)
.+|+|||.+++.+++ ++.++|++++||+|||++++.++...+..... .+++|||||+ .++.||..++.++++
T Consensus 6 ~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 589999999999998 47789999999999999998888777765332 5689999999 899999999999987
Q ss_pred -CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--H-hhcCeeEEEEccccccCChhhHHHHHHHcc-
Q 004103 130 -SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--L-KKVQWIYMIVDEGHRLKNHECALAKTISGY- 204 (773)
Q Consensus 130 -~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l-~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~- 204 (773)
++.+..+.|............ ..++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~ 156 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 156 (556)
T ss_dssp GTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHHHHH
Confidence 788888888764433222211 3578999999999875433 2 334689999999999987654 33322222
Q ss_pred --------ccceEEEecCCCCCCCH-------HHHHHhhccccCC----CCCChHhHHHHhcccccccCCcc--CChHH-
Q 004103 205 --------QIQRRLLLTGTPIQNSL-------QELWSLLNFLLPT----IFNSVENFEEWFNAPFKDRGQVA--LTDEE- 262 (773)
Q Consensus 205 --------~~~~rllLTgTP~~n~~-------~el~~lL~~L~p~----~~~~~~~f~~~f~~~~~~~~~~~--~~~~~- 262 (773)
...++++|||||..++. ..+..+...+.+. .......+..++..+........ ....-
T Consensus 157 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (556)
T 4a2p_A 157 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 236 (556)
T ss_dssp HHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHH
T ss_pred HhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHH
Confidence 23679999999987653 2233333333322 12234555555554433221111 11111
Q ss_pred --HHHHHHHHHhhhhhhh----------------------hhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcc
Q 004103 263 --QLLIIRRLHHVIRPFI----------------------LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGR 318 (773)
Q Consensus 263 --~~~~~~~L~~~L~p~~----------------------lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~ 318 (773)
.......++..++.++ ....+......+| ....+..+|..+.....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 306 (556)
T 4a2p_A 237 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE----------DKEEESRICRALFICTE 306 (556)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhccc----------ccchhHHHHHHHHHHHH
Confidence 1111122222222111 1111111111111 11112222222211000
Q ss_pred c--------ccccCCCccchHHHHHHHHHHHhCCCCcccccccc---h--hhHHH-------HhhcchHHHHHHHHHHhh
Q 004103 319 V--------GLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNM---W--RKEEI-------IRASGKFELLDRLLPKLR 378 (773)
Q Consensus 319 ~--------~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~---~--~~~~l-------~~~s~K~~~L~~ll~~l~ 378 (773)
. ......+.......+...+.....+.+- ...... + ....+ ...++|+..|.++|....
T Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~ 385 (556)
T 4a2p_A 307 HLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYT-ELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 385 (556)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHh
Confidence 0 0000000000000000000000000000 000000 0 00000 014789999999998765
Q ss_pred --hcCCcEEEEeecHHHHHHHHHHHHhC------------CCeEEEEcCCCCHHHHHHHHHhhcC-CCCCcEEEEEeccc
Q 004103 379 --KSGHRVLLFSQMTRLMDILEIYLKLN------------DFKFLRLDGSTKTEERGTLLKQFNA-PDSPYFMFLLSTRA 443 (773)
Q Consensus 379 --~~g~kvLIFsq~~~~ld~L~~~L~~~------------g~~~~~i~G~~~~~eR~~~i~~Fn~-~~~~~~v~LlSt~a 443 (773)
..++|+||||+++.+++.|.++|... |..+..+||+++.++|.+++++|++ +... +||||++
T Consensus 386 ~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~~ 462 (556)
T 4a2p_A 386 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSV 462 (556)
T ss_dssp HHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CC---EEEEEC-
T ss_pred cCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceE---EEEEcCc
Confidence 56899999999999999999999775 6666777888999999999999998 7666 7999999
Q ss_pred ccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHHHH
Q 004103 444 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQ 515 (773)
Q Consensus 444 gg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi~ 515 (773)
+++|||+++|++||+||+||||..|+||+|| + +.+++.+|.|++.+++++. ......|..+...++.
T Consensus 463 ~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-g---R~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~ 529 (556)
T 4a2p_A 463 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-G---RAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 529 (556)
T ss_dssp ----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-C---CCCCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 4 4578999999999999988 5566666666665554
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-38 Score=385.87 Aligned_cols=439 Identities=17% Similarity=0.194 Sum_probs=225.3
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--CCCEEEEeCC-cchHHHHHHHHhhcC
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV--TGPHVIVAPK-AVLPNWINEFSTWAP 129 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~--~gp~LIVvP~-sll~qW~~E~~k~~p 129 (773)
..+|+|||.+++.+++ ++.++|++++||+|||++++..+..++..... .+++|||||+ .++.||..+|.++++
T Consensus 246 ~~~l~~~Q~~~i~~~l----~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHH----hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 4689999999999987 47889999999999999998888877765432 5689999998 799999999999987
Q ss_pred --CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--H-hhcCeeEEEEccccccCChhhHHHHHHHcc
Q 004103 130 --SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--L-KKVQWIYMIVDEGHRLKNHECALAKTISGY 204 (773)
Q Consensus 130 --~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l-~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~ 204 (773)
++.+..+.|............ ..++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~ 396 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRY 396 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHHHHH
Confidence 788999998875443222211 4689999999999875432 2 233579999999999987554 33333222
Q ss_pred ---------ccceEEEecCCCCCCCHHHHHHhhc-------cccCC----CCCChHhHHHHhcccccccCCccCChHHHH
Q 004103 205 ---------QIQRRLLLTGTPIQNSLQELWSLLN-------FLLPT----IFNSVENFEEWFNAPFKDRGQVALTDEEQL 264 (773)
Q Consensus 205 ---------~~~~rllLTgTP~~n~~~el~~lL~-------~L~p~----~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~ 264 (773)
...++++|||||.+++..++...++ .+.+. .......+..++..+......... ..
T Consensus 397 ~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~--~~-- 472 (797)
T 4a2q_A 397 LEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR--RI-- 472 (797)
T ss_dssp HHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCC--CS--
T ss_pred HHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCC--CC--
Confidence 2367999999998765433332222 11111 111112222222221110000000 00
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHhhcCC--CceeEEEEecCCHHH-HHHHHHHHHhcccccccCCCc----cchHHHHHHH
Q 004103 265 LIIRRLHHVIRPFILRRKKDEVEKYLP--GKSQVILKCDMSAWQ-KVYYQQVTDVGRVGLDTGTGK----SKSLQNLSMQ 337 (773)
Q Consensus 265 ~~~~~L~~~L~p~~lRR~k~dv~~~LP--~k~e~~v~~~~s~~q-~~~Y~~i~~~~~~~~~~~~~~----~~~~~~~~~~ 337 (773)
...+...+..+ +..........++ .... .-...+.... ..+...+.............. ...+......
T Consensus 473 --~~~~~~~~~~l-~~~i~~~~~~~~~l~~l~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 548 (797)
T 4a2q_A 473 --HNPFAAIISNL-MSETEALMRTIYSVDTLSQ-NSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEH 548 (797)
T ss_dssp --CCHHHHHHHHH-HHHHHHHHHHC-------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHH
T ss_pred --CcHHHHHHHHH-HHHHHHHHHHHHhhHHhhh-hccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 00000000000 0000000000000 0000 0000000000 000000000000000000000 0001111111
Q ss_pred HHHHhCCCCcccc--------------------cccchh----------hHHH-------HhhcchHHHHHHHHHHhh--
Q 004103 338 LRKCCNHPYLFVG--------------------EYNMWR----------KEEI-------IRASGKFELLDRLLPKLR-- 378 (773)
Q Consensus 338 Lrk~~~hP~l~~~--------------------~~~~~~----------~~~l-------~~~s~K~~~L~~ll~~l~-- 378 (773)
|++......+... ...... ...+ ...++|+..|.++|....
T Consensus 549 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~ 628 (797)
T 4a2q_A 549 LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY 628 (797)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhcc
Confidence 1111000000000 000000 0000 014789999999998754
Q ss_pred hcCCcEEEEeecHHHHHHHHHHHHhC------------CCeEEEEcCCCCHHHHHHHHHhhcC-CCCCcEEEEEeccccc
Q 004103 379 KSGHRVLLFSQMTRLMDILEIYLKLN------------DFKFLRLDGSTKTEERGTLLKQFNA-PDSPYFMFLLSTRAGG 445 (773)
Q Consensus 379 ~~g~kvLIFsq~~~~ld~L~~~L~~~------------g~~~~~i~G~~~~~eR~~~i~~Fn~-~~~~~~v~LlSt~agg 445 (773)
..++|+||||+++.+++.|.++|... |..+..+||+++.++|..++++|++ +... |||||++++
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~---vLVaT~~~~ 705 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSVAD 705 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS---EEEEECC--
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce---EEEEcCchh
Confidence 56799999999999999999999763 6677888899999999999999998 7766 899999999
Q ss_pred ccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhHHHHHHHc
Q 004103 446 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 516 (773)
Q Consensus 446 ~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l~~~vi~~ 516 (773)
+|||++.|++||+||+||||..++||+|| +| .+++.+|.|++.++++++ ......|..+...++..
T Consensus 706 ~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~ 771 (797)
T 4a2q_A 706 EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 771 (797)
T ss_dssp -----CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 55 578999999999999998 66666777776666654
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.4e-38 Score=389.90 Aligned_cols=402 Identities=16% Similarity=0.189 Sum_probs=226.6
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--CCCEEEEeCC-cchHHHHHHHHhhcC
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV--TGPHVIVAPK-AVLPNWINEFSTWAP 129 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~--~gp~LIVvP~-sll~qW~~E~~k~~p 129 (773)
..+|+|||.+++.+++ ++.++|++++||+|||++++.++..++..... .+++|||+|+ .|+.||..+|.++++
T Consensus 246 ~~~~r~~Q~~ai~~il----~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4689999999999997 47889999999999999988888766554321 5689999998 799999999999987
Q ss_pred --CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--H-hhcCeeEEEEccccccCChhhHHHHHHHcc
Q 004103 130 --SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--L-KKVQWIYMIVDEGHRLKNHECALAKTISGY 204 (773)
Q Consensus 130 --~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l-~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~ 204 (773)
++.+.++.|............ ..++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~ 396 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRY 396 (936)
T ss_dssp TTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHHHHH
Confidence 788999998775443222111 3578999999999875432 1 233589999999999988654 33333222
Q ss_pred ---------ccceEEEecCCCCCCCHHHHHHhhccc-------cCC----CCCChHhHHHHhcccccccCCccCChHHHH
Q 004103 205 ---------QIQRRLLLTGTPIQNSLQELWSLLNFL-------LPT----IFNSVENFEEWFNAPFKDRGQVALTDEEQL 264 (773)
Q Consensus 205 ---------~~~~rllLTgTP~~n~~~el~~lL~~L-------~p~----~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~ 264 (773)
...++++|||||.+++..++...++.+ ... .......+..++..
T Consensus 397 ~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~---------------- 460 (936)
T 4a2w_A 397 LEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNK---------------- 460 (936)
T ss_dssp HHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCC----------------
T ss_pred HHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccC----------------
Confidence 236799999999886654443322221 111 11111222222221
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEec--CCHHHHHHHHHHHHh--------------------------
Q 004103 265 LIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCD--MSAWQKVYYQQVTDV-------------------------- 316 (773)
Q Consensus 265 ~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~--~s~~q~~~Y~~i~~~-------------------------- 316 (773)
.....+.+. +.+.....+..+...
T Consensus 461 ----------------------------p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~ 512 (936)
T 4a2w_A 461 ----------------------------PEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQN 512 (936)
T ss_dssp ----------------------------CCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHH
T ss_pred ----------------------------CcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHH
Confidence 111222221 111111111111100
Q ss_pred -----------cccccccCCCc----cchHHHHHHHHHHHhCCCCccccccc--------------------chhhHHHH
Q 004103 317 -----------GRVGLDTGTGK----SKSLQNLSMQLRKCCNHPYLFVGEYN--------------------MWRKEEII 361 (773)
Q Consensus 317 -----------~~~~~~~~~~~----~~~~~~~~~~Lrk~~~hP~l~~~~~~--------------------~~~~~~l~ 361 (773)
........... ...+......+++. ++......... ......+.
T Consensus 513 y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~-~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~ 591 (936)
T 4a2w_A 513 YEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLT 591 (936)
T ss_dssp HHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH-HHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 00000000000 00000011111111 00000000000 00000000
Q ss_pred ------------------hhcchHHHHHHHHHHhh--hcCCcEEEEeecHHHHHHHHHHHHhC------------CCeEE
Q 004103 362 ------------------RASGKFELLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIYLKLN------------DFKFL 409 (773)
Q Consensus 362 ------------------~~s~K~~~L~~ll~~l~--~~g~kvLIFsq~~~~ld~L~~~L~~~------------g~~~~ 409 (773)
..++|+..|.++|.... ..++|+||||+++.+++.|.++|... |..+.
T Consensus 592 ~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~ 671 (936)
T 4a2w_A 592 AKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRR 671 (936)
T ss_dssp HHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC------
T ss_pred HHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCc
Confidence 14789999999998864 56799999999999999999999976 66677
Q ss_pred EEcCCCCHHHHHHHHHhhcC-CCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEE
Q 004103 410 RLDGSTKTEERGTLLKQFNA-PDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 488 (773)
Q Consensus 410 ~i~G~~~~~eR~~~i~~Fn~-~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~r 488 (773)
.+||+++..+|.+++++|++ |... |||||+++|+|||++.|++||+||+||||..++||+|| |+.+++.+|.
T Consensus 672 ~~hg~m~~~eR~~il~~Fr~~g~~~---VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~ 744 (936)
T 4a2w_A 672 DQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCIL 744 (936)
T ss_dssp ----------------------CCS---EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEE
T ss_pred ccCCCCCHHHHHHHHHHhhccCCee---EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEE
Confidence 77888999999999999998 7766 79999999999999999999999999999999999999 4557888999
Q ss_pred EEeCCCHHHHHHHHHHHHHhHHHHHHHc
Q 004103 489 LVSVGSIEEVILERAKQKMGIDAKVIQA 516 (773)
Q Consensus 489 Li~~~tiEe~i~~~~~~K~~l~~~vi~~ 516 (773)
|++.+++++..+ ....|..+...++..
T Consensus 745 Li~~~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 745 VTSKTEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp EESCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EEeCCCHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999866 666677777776654
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.4e-38 Score=368.56 Aligned_cols=400 Identities=18% Similarity=0.213 Sum_probs=234.6
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--CCCEEEEeCC-cchHHHHHHHHhhcC-
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV--TGPHVIVAPK-AVLPNWINEFSTWAP- 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~--~gp~LIVvP~-sll~qW~~E~~k~~p- 129 (773)
.+|+|||.+++.+++ ++.++|++++||+|||++++..+...+..... .+++|||||+ .++.||..++.++++
T Consensus 3 ~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 479999999999998 57889999999999999998888777765432 5689999999 999999999999986
Q ss_pred -CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--H-hhcCeeEEEEccccccCChhhHHHHHHHcc-
Q 004103 130 -SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--L-KKVQWIYMIVDEGHRLKNHECALAKTISGY- 204 (773)
Q Consensus 130 -~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l-~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~- 204 (773)
++.+..+.|............ ..++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~ 153 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYL 153 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHH
Confidence 678888888764332221111 3578999999999775443 2 234689999999999988654 33322222
Q ss_pred ---------ccceEEEecCCCCCCCHHHHHH-------hhccccCCCCC----ChHhHHHHhcccccccCCccCChHHHH
Q 004103 205 ---------QIQRRLLLTGTPIQNSLQELWS-------LLNFLLPTIFN----SVENFEEWFNAPFKDRGQVALTDEEQL 264 (773)
Q Consensus 205 ---------~~~~rllLTgTP~~n~~~el~~-------lL~~L~p~~~~----~~~~f~~~f~~~~~~~~~~~~~~~~~~ 264 (773)
...++++|||||..++..++.. +...+....+. ....+..
T Consensus 154 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~-------------------- 213 (555)
T 3tbk_A 154 DHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQ-------------------- 213 (555)
T ss_dssp HHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHT--------------------
T ss_pred HhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHh--------------------
Confidence 2357999999999877433332 22333221111 1111111
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEec--CC-HHHHHHHHHHH---Hhcc--------------------
Q 004103 265 LIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCD--MS-AWQKVYYQQVT---DVGR-------------------- 318 (773)
Q Consensus 265 ~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~--~s-~~q~~~Y~~i~---~~~~-------------------- 318 (773)
..+......+.+. +. +....+...+. ....
T Consensus 214 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~ 269 (555)
T 3tbk_A 214 ------------------------VVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQ 269 (555)
T ss_dssp ------------------------TCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSH
T ss_pred ------------------------hcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccch
Confidence 1111111222221 11 11111110000 0000
Q ss_pred -------------cccccCCCc-----cchHHHHHHHHHHH-------------------------hCCCCcccccccc-
Q 004103 319 -------------VGLDTGTGK-----SKSLQNLSMQLRKC-------------------------CNHPYLFVGEYNM- 354 (773)
Q Consensus 319 -------------~~~~~~~~~-----~~~~~~~~~~Lrk~-------------------------~~hP~l~~~~~~~- 354 (773)
......... ...+......|++. +.+..+.......
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (555)
T 3tbk_A 270 KYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELT 349 (555)
T ss_dssp HHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHH
T ss_pred hhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 000000000 00000011111110 0000000000000
Q ss_pred --h--hhHH-------HHhhcchHHHHHHHHHHhhh--cCCcEEEEeecHHHHHHHHHHHHhCC------------CeEE
Q 004103 355 --W--RKEE-------IIRASGKFELLDRLLPKLRK--SGHRVLLFSQMTRLMDILEIYLKLND------------FKFL 409 (773)
Q Consensus 355 --~--~~~~-------l~~~s~K~~~L~~ll~~l~~--~g~kvLIFsq~~~~ld~L~~~L~~~g------------~~~~ 409 (773)
+ .... ....++|+..|.++|..+.. .++++||||+++.+++.|..+|...| ..+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~ 429 (555)
T 3tbk_A 350 RRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRT 429 (555)
T ss_dssp HHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----
T ss_pred HHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCc
Confidence 0 0000 01237899999999988754 45899999999999999999998763 4556
Q ss_pred EEcCCCCHHHHHHHHHhhcC-CCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEE
Q 004103 410 RLDGSTKTEERGTLLKQFNA-PDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 488 (773)
Q Consensus 410 ~i~G~~~~~eR~~~i~~Fn~-~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~r 488 (773)
.+||+++.++|.+++++|++ +... +||||+++++|||++.|++||+||+||||..|+||+|| |+.+++.+|.
T Consensus 430 ~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~ 502 (555)
T 3tbk_A 430 NRATGMTLPAQKCVLEAFRASGDNN---ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFL 502 (555)
T ss_dssp ----------------------CCS---EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEE
T ss_pred ccccccCHHHHHHHHHHHhcCCCee---EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEE
Confidence 66679999999999999998 7766 78999999999999999999999999999999999999 6668899999
Q ss_pred EEeCCCHHHHHHHHHHHHHhHHHHHH
Q 004103 489 LVSVGSIEEVILERAKQKMGIDAKVI 514 (773)
Q Consensus 489 Li~~~tiEe~i~~~~~~K~~l~~~vi 514 (773)
|+++++.++. ......|..+....+
T Consensus 503 l~~~~~~~~~-~~~~~~~e~~~~~~~ 527 (555)
T 3tbk_A 503 LTSSADVIEK-EKANMIKEKIMNESI 527 (555)
T ss_dssp EESCHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHH-HHHhhHHHHHHHHHH
Confidence 9999998887 334444444444443
No 12
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=9.9e-36 Score=342.47 Aligned_cols=346 Identities=15% Similarity=0.159 Sum_probs=250.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhh--cCC
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTW--APS 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~--~p~ 130 (773)
.+|+|||.+++.+++. +.+++|+++||+|||++++.++..+.... .+++|||||. .|+.||.++|.+| ++.
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 3899999999999885 46799999999999999988887776642 3489999998 8889999999998 566
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc-ccceE
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQRR 209 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~-~~~~r 209 (773)
..+..+.|....... .....+|+|+||+.+.+... .....|++|||||||++.+. .....+..+ ...++
T Consensus 186 ~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~-~~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~ 255 (510)
T 2oca_A 186 AMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPK-EWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFK 255 (510)
T ss_dssp GGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCG-GGGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEE
T ss_pred cceEEEecCCccccc-------cccCCcEEEEeHHHHhhchh-hhhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEE
Confidence 677777765432221 12578999999998876532 22236899999999999863 344555666 67789
Q ss_pred EEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHHhhc
Q 004103 210 LLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKY 289 (773)
Q Consensus 210 llLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~ 289 (773)
++|||||. +...+++.+..++.+..+.... ... .-...
T Consensus 256 l~lSATp~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~--------------------------~~~~~ 293 (510)
T 2oca_A 256 FGLSGSLR-DGKANIMQYVGMFGEIFKPVTT---------------SKL--------------------------MEDGQ 293 (510)
T ss_dssp EEEESCGG-GCSSCHHHHHHHHCSEECCCCC---------------C---------------------------------
T ss_pred EEEEeCCC-CCcccHHHhHHhhCCeEEeeCH---------------HHH--------------------------hhCCc
Confidence 99999994 4444455555444443221100 000 00012
Q ss_pred CCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHH
Q 004103 290 LPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFEL 369 (773)
Q Consensus 290 LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~ 369 (773)
+++.....+.+.+++....... ...... .+. .+.....|...
T Consensus 294 l~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~---~~~-------------------~~~~~~~~~~~ 335 (510)
T 2oca_A 294 VTELKINSIFLRYPDEFTTKLK----------------GKTYQE---EIK-------------------IITGLSKRNKW 335 (510)
T ss_dssp --CCEEEEEEEECCHHHHHHHT----------------TCCHHH---HHH-------------------HHHTCHHHHHH
T ss_pred CCCceEEEEeecCChHHhcccc----------------ccchHH---HHH-------------------HHhccHHHHHH
Confidence 5666666667776655431100 000000 011 11222345666
Q ss_pred HHHHHHHhhhc-CCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEec-cccccc
Q 004103 370 LDRLLPKLRKS-GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST-RAGGLG 447 (773)
Q Consensus 370 L~~ll~~l~~~-g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt-~agg~G 447 (773)
+..++...... +.++|||+. +..++.|.+.|...+.++..+||+++..+|.++++.|+++..+ +||+| .++++|
T Consensus 336 l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~---vLv~T~~~~~~G 411 (510)
T 2oca_A 336 IAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGI---IIVASYGVFSTG 411 (510)
T ss_dssp HHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSC---EEEEEHHHHHHS
T ss_pred HHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCC---EEEEEcChhhcc
Confidence 67777665444 556677777 8888889999999988999999999999999999999987766 78888 999999
Q ss_pred CCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcC-eEEEEEEEeCCCHHHHH
Q 004103 448 LNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKK-EVRVFVLVSVGSIEEVI 499 (773)
Q Consensus 448 LNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k-~V~V~rLi~~~tiEe~i 499 (773)
||++.+++||+++++||+..+.|++||++|.|+.+ .|.||.++...++.+.+
T Consensus 412 iDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~ 464 (510)
T 2oca_A 412 ISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKS 464 (510)
T ss_dssp CCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSS
T ss_pred cccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhh
Confidence 99999999999999999999999999999999987 69999999987655444
No 13
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=8.4e-36 Score=356.04 Aligned_cols=431 Identities=15% Similarity=0.161 Sum_probs=244.0
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc---CCCCCEEEEeCC-cchHHH-HHHHHhhc
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK---GVTGPHVIVAPK-AVLPNW-INEFSTWA 128 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~---~~~gp~LIVvP~-sll~qW-~~E~~k~~ 128 (773)
.+|+|||.+++.+++ ++.++|++++||+|||++++.++..++... +..+++|||+|+ .|+.|| ..+|.+++
T Consensus 6 ~~l~~~Q~~~i~~il----~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPAL----EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHH----SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHH----hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 589999999999998 477899999999999999988887766542 233689999998 688999 99999999
Q ss_pred CC-ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhH--------HHHhhcCeeEEEEccccccCChh---hH
Q 004103 129 PS-IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--------QYLKKVQWIYMIVDEGHRLKNHE---CA 196 (773)
Q Consensus 129 p~-~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~--------~~l~~~~~~~vIiDEaH~lkn~~---s~ 196 (773)
+. +.+..+.|............ ...+|+|+||+.+.... ..+....|++|||||||++.... ..
T Consensus 82 ~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i 157 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 157 (699)
T ss_dssp TTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSH
T ss_pred CcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHH
Confidence 86 88888888754332211111 46899999999998643 22344579999999999985422 11
Q ss_pred HHHHHHc-c-------------ccceEEEecCCCCCCC-------HHHHHHhhccccCCCCC----ChHhHHHHhccccc
Q 004103 197 LAKTISG-Y-------------QIQRRLLLTGTPIQNS-------LQELWSLLNFLLPTIFN----SVENFEEWFNAPFK 251 (773)
Q Consensus 197 ~~~~l~~-~-------------~~~~rllLTgTP~~n~-------~~el~~lL~~L~p~~~~----~~~~f~~~f~~~~~ 251 (773)
....+.. + +..++++|||||..++ ..++..++..+.+..+. ....+..++..|..
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~ 237 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCK 237 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEE
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCce
Confidence 1122211 1 4467899999999863 33444444555542221 22333443333221
Q ss_pred ccCCccCCh-HHHHHHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCC-----
Q 004103 252 DRGQVALTD-EEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT----- 325 (773)
Q Consensus 252 ~~~~~~~~~-~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~----- 325 (773)
......... ..-...+..+...+..+ + .+.+.... . +.....+...+............
T Consensus 238 ~~~~~~~~~~~~~~~~l~~l~~~i~~~--------~--~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (699)
T 4gl2_A 238 KFAIADATREDPFKEKLLEIMTRIQTY--------C--QMSPMSDF----G-TQPYEQWAIQMEKKAAKEGNRKERVCAE 302 (699)
T ss_dssp EEEEEC-----CHHHHHHHHHHHHHHH--------H--TCCCCSCS----S-SHHHHHHHHHHHHHHHHHTCTTTHHHHH
T ss_pred EEEEcccccCChHHHHHHHHHHHHHHH--------h--ccCcchhc----c-chHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 111000000 00000111111111111 0 01110000 0 00000000000000000000000
Q ss_pred ---------------Cc---cchHHHHHHHHHHHhCC--------CCcccccccch------hh---HHHH----hhcch
Q 004103 326 ---------------GK---SKSLQNLSMQLRKCCNH--------PYLFVGEYNMW------RK---EEII----RASGK 366 (773)
Q Consensus 326 ---------------~~---~~~~~~~~~~Lrk~~~h--------P~l~~~~~~~~------~~---~~l~----~~s~K 366 (773)
+. ...+......+...... +.......... .. ..+. ..+.|
T Consensus 303 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k 382 (699)
T 4gl2_A 303 HLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEK 382 (699)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHH
Confidence 00 00000000000000000 00000000000 00 0000 03567
Q ss_pred HHHHHHHHHHhhhc---CCcEEEEeecHHHHHHHHHHHHhC------CCeEEEEcCC--------CCHHHHHHHHHhhcC
Q 004103 367 FELLDRLLPKLRKS---GHRVLLFSQMTRLMDILEIYLKLN------DFKFLRLDGS--------TKTEERGTLLKQFNA 429 (773)
Q Consensus 367 ~~~L~~ll~~l~~~---g~kvLIFsq~~~~ld~L~~~L~~~------g~~~~~i~G~--------~~~~eR~~~i~~Fn~ 429 (773)
+..|.++|...... +.++||||+++.+++.|.++|... |+++..+||+ ++..+|.++++.|++
T Consensus 383 ~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~ 462 (699)
T 4gl2_A 383 LTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT 462 (699)
T ss_dssp SSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhc
Confidence 77777777764432 789999999999999999999987 9999999999 999999999999999
Q ss_pred CCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhH
Q 004103 430 PDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGI 509 (773)
Q Consensus 430 ~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l 509 (773)
+..+ +||+|+++++|||++++++||+||+||||..+.||+|||+|.| ..++.+...++.+.........+..+
T Consensus 463 g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~~~~~ 535 (699)
T 4gl2_A 463 GKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVNDFREKM 535 (699)
T ss_dssp ---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHHHHHH
T ss_pred CCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHHHHHH
Confidence 8876 7999999999999999999999999999999999999986655 44555566666555444443344444
Q ss_pred HHHHH
Q 004103 510 DAKVI 514 (773)
Q Consensus 510 ~~~vi 514 (773)
....+
T Consensus 536 ~~~~~ 540 (699)
T 4gl2_A 536 MYKAI 540 (699)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 14
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.1e-35 Score=348.42 Aligned_cols=418 Identities=18% Similarity=0.179 Sum_probs=228.4
Q ss_pred cCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--CCCEEEEeCC-cchHHHHHHHHhh
Q 004103 51 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV--TGPHVIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 51 l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~--~gp~LIVvP~-sll~qW~~E~~k~ 127 (773)
+...+|+|||.+++.+++ .+.++|++++||+|||++++.++...+..... .+++|||+|+ +++.||..++.++
T Consensus 9 ~g~~~lr~~Q~~~i~~~l----~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~ 84 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAM----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKY 84 (696)
T ss_dssp TC--CCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 334689999999999998 47889999999999999998888776655332 2689999998 9999999999999
Q ss_pred cC--CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--H-hhcCeeEEEEccccccCChhhHHHHHHH
Q 004103 128 AP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--L-KKVQWIYMIVDEGHRLKNHECALAKTIS 202 (773)
Q Consensus 128 ~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l-~~~~~~~vIiDEaH~lkn~~s~~~~~l~ 202 (773)
++ ++.+..+.|............ ...+|+|+||+.+.+.... + ....|++|||||||++.+.... ...+.
T Consensus 85 ~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~-~~i~~ 159 (696)
T 2ykg_A 85 FERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY-NMIMF 159 (696)
T ss_dssp TTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHH-HHHHH
T ss_pred hccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccH-HHHHH
Confidence 86 678888888653322211111 3579999999999876442 2 3446899999999999876532 22221
Q ss_pred -c----c-----ccceEEEecCCCCCCC-------HHHHHHhhccccCCCCC----ChHhHHHHhcccccccC---CccC
Q 004103 203 -G----Y-----QIQRRLLLTGTPIQNS-------LQELWSLLNFLLPTIFN----SVENFEEWFNAPFKDRG---QVAL 258 (773)
Q Consensus 203 -~----~-----~~~~rllLTgTP~~n~-------~~el~~lL~~L~p~~~~----~~~~f~~~f~~~~~~~~---~~~~ 258 (773)
. + ...++++|||||..++ ...+..++..+....+. .......+...|..... ....
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 1 1 4578899999998543 45555555544443332 22333333333321100 0000
Q ss_pred ChHHHH--HHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHH----HhcccccccCCCcc----
Q 004103 259 TDEEQL--LIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT----DVGRVGLDTGTGKS---- 328 (773)
Q Consensus 259 ~~~~~~--~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~----~~~~~~~~~~~~~~---- 328 (773)
...... .....+..+. ..+... |... ..+...+.....|.... ..............
T Consensus 240 ~~fs~~~~~l~~~i~~l~---------~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLA---------KRICKD-LENL---SQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC 306 (696)
T ss_dssp CHHHHHHHHHHHHHHHHH---------HHHSTT-GGGS---SSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH---------HHHHHH-HHHh---hccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHH
Confidence 000000 0001111111 111110 0000 00111111112222211 11000000000000
Q ss_pred chHHHHHHHHHHHhCCCCccccccc--------------------chhhHHHH------------------hhcchHHHH
Q 004103 329 KSLQNLSMQLRKCCNHPYLFVGEYN--------------------MWRKEEII------------------RASGKFELL 370 (773)
Q Consensus 329 ~~~~~~~~~Lrk~~~hP~l~~~~~~--------------------~~~~~~l~------------------~~s~K~~~L 370 (773)
..+......|++.. +|........ ......+. ..+.|+..|
T Consensus 307 ~~l~~~~~~l~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L 385 (696)
T 2ykg_A 307 KALFLYTSHLRKYN-DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDL 385 (696)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHh-HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 01111222222221 1211110000 00000111 256799999
Q ss_pred HHHHHHhh--hcCCcEEEEeecHHHHHHHHHHHHhCC----CeEEEEcC--------CCCHHHHHHHHHhhcC-CCCCcE
Q 004103 371 DRLLPKLR--KSGHRVLLFSQMTRLMDILEIYLKLND----FKFLRLDG--------STKTEERGTLLKQFNA-PDSPYF 435 (773)
Q Consensus 371 ~~ll~~l~--~~g~kvLIFsq~~~~ld~L~~~L~~~g----~~~~~i~G--------~~~~~eR~~~i~~Fn~-~~~~~~ 435 (773)
.+++.... ..++++||||+++..++.|.++|...| +++..++| +++.++|.+++++|++ |...
T Consensus 386 ~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~-- 463 (696)
T 2ykg_A 386 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN-- 463 (696)
T ss_dssp HHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCS--
T ss_pred HHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCcc--
Confidence 99998764 357899999999999999999999988 89999954 9999999999999998 7766
Q ss_pred EEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHH
Q 004103 436 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEV 498 (773)
Q Consensus 436 v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~ 498 (773)
+||+|+++++|||++++++||+||+|||+..+.||+|| +|. ++..++.|++.+++++.
T Consensus 464 -vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 464 -ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp -CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred -EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 79999999999999999999999999999999999999 885 66788999998877654
No 15
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=100.00 E-value=4.6e-35 Score=309.38 Aligned_cols=206 Identities=22% Similarity=0.255 Sum_probs=162.6
Q ss_pred CCCceeEEEEecCCHHHHHHHHHHHHhccccc----ccCCCc----cchHHHHHHHHHHHhCCCCccccccc------ch
Q 004103 290 LPGKSQVILKCDMSAWQKVYYQQVTDVGRVGL----DTGTGK----SKSLQNLSMQLRKCCNHPYLFVGEYN------MW 355 (773)
Q Consensus 290 LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~----~~~~~~----~~~~~~~~~~Lrk~~~hP~l~~~~~~------~~ 355 (773)
-|++.|++++++||+.|+++|+.+.......+ ...... ..++.+++|+||++||||+|+...+. ..
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~~ 99 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRD 99 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTT
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccccccc
Confidence 48999999999999999999999975433221 111111 24678999999999999999954221 12
Q ss_pred hhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcE
Q 004103 356 RKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 435 (773)
Q Consensus 356 ~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~ 435 (773)
..+.++..|||+.+|+++|..+++.|||||||||++.++|+|+++|..+|+.|+|+||++...+ ++ ..+..++
T Consensus 100 ~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k------~~~~~~~ 172 (328)
T 3hgt_A 100 VPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA------ANDFSCT 172 (328)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------CCSEE
T ss_pred hhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh------cccCCce
Confidence 2677889999999999999999999999999999999999999999999999999999966532 22 1135577
Q ss_pred EEEEecccccccCC-----cccCCeeEEeCCCCChhhH-HHHhhhhhhc--CCcCeEEEEEEEeCCCHHHHHHHHH
Q 004103 436 MFLLSTRAGGLGLN-----LQTADTVIIFDSDWNPQMD-QQAEDRAHRI--GQKKEVRVFVLVSVGSIEEVILERA 503 (773)
Q Consensus 436 v~LlSt~agg~GLN-----L~~ad~VI~~D~~wNp~~~-~Qa~gRa~Ri--GQ~k~V~V~rLi~~~tiEe~i~~~~ 503 (773)
++|+ |++||.|+| +.+||+||+||++|||+.+ +||+.|+||+ ||+++|.||||++.+|||+.++..-
T Consensus 173 i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~ 247 (328)
T 3hgt_A 173 VHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFG 247 (328)
T ss_dssp EEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHH
T ss_pred EEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHcc
Confidence 8777 668888886 7999999999999999998 9999999999 7899999999999999999999863
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.5e-33 Score=310.32 Aligned_cols=329 Identities=17% Similarity=0.177 Sum_probs=230.7
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc---CC
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---PS 130 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~---p~ 130 (773)
.|+|||.+++.+++ .+.+++++++||+|||++++..+...+.......++|||||. .++.||..++.++. |+
T Consensus 30 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHT----TTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 69999999999887 467899999999999999877766554433345589999999 88899999999885 57
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChhh---HHHHHHHcc-
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHEC---ALAKTISGY- 204 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~s---~~~~~l~~~- 204 (773)
+.+..+.|.......... +.. ..++|+|+||+.+...... +....+++|||||||++.+... .+...+...
T Consensus 106 ~~~~~~~g~~~~~~~~~~-~~~--~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~ 182 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDEEV-LKK--NCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 182 (391)
T ss_dssp CCEEEECTTSCHHHHHHH-HHH--SCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC
T ss_pred eEEEEEeCCCCHHHHHHH-Hhc--CCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCC
Confidence 888888876543332211 111 4579999999999764332 2234789999999999976321 222233333
Q ss_pred ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhh
Q 004103 205 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 284 (773)
Q Consensus 205 ~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~ 284 (773)
....++++||||.......+... +..+.. +... .
T Consensus 183 ~~~~~i~~SAT~~~~~~~~~~~~------------------~~~~~~---------------------------~~~~-~ 216 (391)
T 1xti_A 183 HEKQVMMFSATLSKEIRPVCRKF------------------MQDPME---------------------------IFVD-D 216 (391)
T ss_dssp SSSEEEEEESSCCSTHHHHHHHH------------------CSSCEE---------------------------EECC-C
T ss_pred CCceEEEEEeeCCHHHHHHHHHH------------------cCCCeE---------------------------EEec-C
Confidence 35678999999854311111100 000000 0000 0
Q ss_pred HHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhc
Q 004103 285 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 364 (773)
Q Consensus 285 dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s 364 (773)
.............+.+ ...
T Consensus 217 ~~~~~~~~~~~~~~~~-------------------------------------------------------------~~~ 235 (391)
T 1xti_A 217 ETKLTLHGLQQYYVKL-------------------------------------------------------------KDN 235 (391)
T ss_dssp CCCCCCTTCEEEEEEC-------------------------------------------------------------CGG
T ss_pred ccccCcccceEEEEEc-------------------------------------------------------------Cch
Confidence 0000000011111110 112
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
.|...+..++... .+.++||||+....++.+..+|...|+.+..+||+++.++|..+++.|+++... +|++|+++
T Consensus 236 ~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~ 310 (391)
T 1xti_A 236 EKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATNLF 310 (391)
T ss_dssp GHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCS---EEEESCCC
T ss_pred hHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc---EEEECChh
Confidence 3555666666654 567999999999999999999999999999999999999999999999998776 89999999
Q ss_pred cccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHH
Q 004103 445 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 505 (773)
Q Consensus 445 g~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~ 505 (773)
++|+|++.+++||+||+|||+..+.|++||++|.|+...+. .|++.. -+..++.....
T Consensus 311 ~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~-~~~~~~~~~~~ 368 (391)
T 1xti_A 311 GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSDE-NDAKILNDVQD 368 (391)
T ss_dssp SSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEE--EEECSH-HHHHHHHHHHH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEE--EEEccc-chHHHHHHHHH
Confidence 99999999999999999999999999999999999766554 444433 24445444443
No 17
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.7e-34 Score=338.19 Aligned_cols=354 Identities=14% Similarity=0.150 Sum_probs=218.8
Q ss_pred CCCchHHHHHHHHHHHHhhcCC-CCeEEecCCCCCHHHHHHHHHHHHHHhc------CCCCCEEEEeCC-cchHHHH-HH
Q 004103 53 GGELRAYQLEGLQWMLSLFNNN-LNGILADEMGLGKTIQTIALIAYLLENK------GVTGPHVIVAPK-AVLPNWI-NE 123 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~-~~gILademGlGKTi~aiali~~l~~~~------~~~gp~LIVvP~-sll~qW~-~E 123 (773)
+..|+|||.+++.+++..+.++ .+++++++||+|||++++.++..+.... ...+++|||||. .|+.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4689999999999999776655 4579999999999999999998887753 145689999996 8889999 88
Q ss_pred HHhhcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH------HHhhcCeeEEEEccccccCChh-hH
Q 004103 124 FSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ------YLKKVQWIYMIVDEGHRLKNHE-CA 196 (773)
Q Consensus 124 ~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~------~l~~~~~~~vIiDEaH~lkn~~-s~ 196 (773)
|..|.+.. ..+.+.. .....+|+|+||+.+..... .+....|++|||||||++.+.. +.
T Consensus 256 ~~~~~~~~--~~~~~~~------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~ 321 (590)
T 3h1t_A 256 FTPFGDAR--HKIEGGK------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSN 321 (590)
T ss_dssp CTTTCSSE--EECCC--------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHhcchhh--hhhhccC------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHH
Confidence 88886543 2233221 11578999999999977532 2333468999999999997653 44
Q ss_pred HHHHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhh
Q 004103 197 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 276 (773)
Q Consensus 197 ~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p 276 (773)
....+..+...++++|||||..+...+++.++.- .++. .. +...+.
T Consensus 322 ~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~---~~~~--------------------~~----------~~~~i~- 367 (590)
T 3h1t_A 322 WREILEYFEPAFQIGMTATPLREDNRDTYRYFGN---PIYT--------------------YS----------LRQGID- 367 (590)
T ss_dssp CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCS---CSEE--------------------EC----------HHHHHH-
T ss_pred HHHHHHhCCcceEEEeccccccccchhHHHHcCC---ceEe--------------------cC----------HHHHhh-
Confidence 5556677788899999999998887776655431 1100 00 000000
Q ss_pred hhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchh
Q 004103 277 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 356 (773)
Q Consensus 277 ~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~ 356 (773)
...+++.....+................+....... ...+....
T Consensus 368 ----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~ 411 (590)
T 3h1t_A 368 ----------DGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP--------------------------DGEYQTKD 411 (590)
T ss_dssp ----------HTSSCCEEEEEEEETTCC-------------------------------------------------CCS
T ss_pred ----------CCccCCcEEEEeeeeeeccccccccccccccccccc--------------------------cccCCHHH
Confidence 011233333333333221111000000000000000 00000000
Q ss_pred hHHHHhhcchHHHHHHHHHHhh---hcCCcEEEEeecHHHHHHHHHHHHhCCCe--------EEEEcCCCCHHHHHHHHH
Q 004103 357 KEEIIRASGKFELLDRLLPKLR---KSGHRVLLFSQMTRLMDILEIYLKLNDFK--------FLRLDGSTKTEERGTLLK 425 (773)
Q Consensus 357 ~~~l~~~s~K~~~L~~ll~~l~---~~g~kvLIFsq~~~~ld~L~~~L~~~g~~--------~~~i~G~~~~~eR~~~i~ 425 (773)
....+....+...+.+.+..+. ..+.|+||||+....++.|...|...+.. +..++|.++. +|..+++
T Consensus 412 ~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~ 490 (590)
T 3h1t_A 412 FERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLS 490 (590)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHH
T ss_pred hhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHH
Confidence 1111222233334333333221 34679999999999999999999765443 7889999864 7999999
Q ss_pred hhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCC---cCeEEEEEEEe
Q 004103 426 QFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQ---KKEVRVFVLVS 491 (773)
Q Consensus 426 ~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ---~k~V~V~rLi~ 491 (773)
+|++++.+..++|+||+++++|||++.+++||+++++||+..+.|++||++|.|+ +..+.||.++.
T Consensus 491 ~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~g 559 (590)
T 3h1t_A 491 RFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYTG 559 (590)
T ss_dssp HHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECSS
T ss_pred HHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecCC
Confidence 9999887777899999999999999999999999999999999999999999995 55688888873
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.3e-32 Score=305.80 Aligned_cols=315 Identities=16% Similarity=0.206 Sum_probs=225.5
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--Cc
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--SI 131 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~~ 131 (773)
+|+|||.+++.+++. +.+++++++||+|||++++..+...........++|||+|. .++.||.+++.++++ +.
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 699999999999884 67799999999999998877666554433345589999999 888999999999875 46
Q ss_pred eEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChhh-H-HHHHHHcc-cc
Q 004103 132 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHEC-A-LAKTISGY-QI 206 (773)
Q Consensus 132 ~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~s-~-~~~~l~~~-~~ 206 (773)
.+..+.|.......... ....++|+|+||+.+...... +...++++|||||||++.+... . +...+..+ ..
T Consensus 119 ~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~ 194 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPT 194 (400)
T ss_dssp CEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSS
T ss_pred eEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcC
Confidence 77777776654433222 125789999999998664332 2234689999999999876432 1 22222333 35
Q ss_pred ceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 004103 207 QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 286 (773)
Q Consensus 207 ~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv 286 (773)
...++||||+-.. ..++ + ..++.. |+.+... ..
T Consensus 195 ~~~i~lSAT~~~~-~~~~---~--------------~~~~~~---------------------------~~~~~~~-~~- 227 (400)
T 1s2m_A 195 HQSLLFSATFPLT-VKEF---M--------------VKHLHK---------------------------PYEINLM-EE- 227 (400)
T ss_dssp CEEEEEESCCCHH-HHHH---H--------------HHHCSS---------------------------CEEESCC-SS-
T ss_pred ceEEEEEecCCHH-HHHH---H--------------HHHcCC---------------------------CeEEEec-cc-
Confidence 6789999997321 1110 0 000000 0000000 00
Q ss_pred hhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcch
Q 004103 287 EKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGK 366 (773)
Q Consensus 287 ~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K 366 (773)
...+........+ ....|
T Consensus 228 -~~~~~~~~~~~~~-------------------------------------------------------------~~~~k 245 (400)
T 1s2m_A 228 -LTLKGITQYYAFV-------------------------------------------------------------EERQK 245 (400)
T ss_dssp -CBCTTEEEEEEEC-------------------------------------------------------------CGGGH
T ss_pred -cccCCceeEEEEe-------------------------------------------------------------chhhH
Confidence 0001111111110 12345
Q ss_pred HHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccc
Q 004103 367 FELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL 446 (773)
Q Consensus 367 ~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~ 446 (773)
...+..++... .+.++||||+....++.+...|...|+.+..+||+++.++|..+++.|+++... +|++|+++++
T Consensus 246 ~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vLv~T~~~~~ 320 (400)
T 1s2m_A 246 LHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR---TLVCSDLLTR 320 (400)
T ss_dssp HHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEESSCSSS
T ss_pred HHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCc---EEEEcCcccc
Confidence 66666666653 467999999999999999999999999999999999999999999999988766 7999999999
Q ss_pred cCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 447 GLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 447 GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
|+|++++++||+||++||+..+.|++||++|.|+.. .++.|++.+
T Consensus 321 Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~ 365 (400)
T 1s2m_A 321 GIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWN 365 (400)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGG
T ss_pred CCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccc
Confidence 999999999999999999999999999999999764 455666665
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-32 Score=300.61 Aligned_cols=310 Identities=17% Similarity=0.222 Sum_probs=224.2
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~ 130 (773)
.+|+|||.+++.+++. ++.+++++++||+|||++++..+..+... ....++|||+|. .++.||.+++.++++ .
T Consensus 27 ~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 102 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNE-NNGIEAIILTPTRELAIQVADEIESLKGNKN 102 (367)
T ss_dssp CSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCS-SSSCCEEEECSCHHHHHHHHHHHHHHHCSSC
T ss_pred CCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhcc-cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCC
Confidence 3799999999999885 33678999999999999987776665443 234589999999 788999999999875 4
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChh--hHHHHHHHcc-c
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGY-Q 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~--s~~~~~l~~~-~ 205 (773)
..+..+.|........... ...+|+|+||+.+...... +....|++|||||||++.+.. ..+...+..+ .
T Consensus 103 ~~v~~~~~~~~~~~~~~~~-----~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~ 177 (367)
T 1hv8_A 103 LKIAKIYGGKAIYPQIKAL-----KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNK 177 (367)
T ss_dssp CCEEEECTTSCHHHHHHHH-----HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCS
T ss_pred ceEEEEECCcchHHHHhhc-----CCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCC
Confidence 5677777665443332211 3678999999999765432 223468999999999986644 2334444444 4
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhH
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 285 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~d 285 (773)
..+.++|||||.......+.. ++..+. .+
T Consensus 178 ~~~~i~~SAT~~~~~~~~~~~------------------~~~~~~---------------------------~~------ 206 (367)
T 1hv8_A 178 DKRILLFSATMPREILNLAKK------------------YMGDYS---------------------------FI------ 206 (367)
T ss_dssp SCEEEEECSSCCHHHHHHHHH------------------HCCSEE---------------------------EE------
T ss_pred CceEEEEeeccCHHHHHHHHH------------------HcCCCe---------------------------EE------
Confidence 567799999984321111100 000000 00
Q ss_pred HhhcCCCc-eeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhc
Q 004103 286 VEKYLPGK-SQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 364 (773)
Q Consensus 286 v~~~LP~k-~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s 364 (773)
....+.. ....+.+ ...
T Consensus 207 -~~~~~~~~~~~~~~~-------------------------------------------------------------~~~ 224 (367)
T 1hv8_A 207 -KAKINANIEQSYVEV-------------------------------------------------------------NEN 224 (367)
T ss_dssp -ECCSSSSSEEEEEEC-------------------------------------------------------------CGG
T ss_pred -EecCCCCceEEEEEe-------------------------------------------------------------ChH
Confidence 0000000 0000100 112
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
.|+..+.+++. ..+.++||||+....++.+...|...|+.+..+||+++.++|..+++.|+++... +|++|+++
T Consensus 225 ~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~ 298 (367)
T 1hv8_A 225 ERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR---ILIATDVM 298 (367)
T ss_dssp GHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS---EEEECTTH
T ss_pred HHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCe---EEEECChh
Confidence 34555555554 5678999999999999999999999999999999999999999999999988766 79999999
Q ss_pred cccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 445 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 445 g~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
++|+|++++++||+++++||+..+.|++||++|.|+...+. .++.+.
T Consensus 299 ~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~--~~~~~~ 345 (367)
T 1hv8_A 299 SRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAI--SIINRR 345 (367)
T ss_dssp HHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEE--EEECTT
T ss_pred hcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEE--EEEcHH
Confidence 99999999999999999999999999999999999876554 445554
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.4e-32 Score=306.86 Aligned_cols=317 Identities=18% Similarity=0.228 Sum_probs=227.0
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--Cc
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--SI 131 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~~ 131 (773)
+|+|||.+++.+++ ++.++|++++||+|||++++..+...+.......++|||+|+ .++.||.+++.++.. ++
T Consensus 59 ~~~~~Q~~ai~~i~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQII----KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 69999999999988 477899999999999999877766554433445689999999 788999999999874 45
Q ss_pred eEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChh--hHHHHHHHcc-cc
Q 004103 132 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGY-QI 206 (773)
Q Consensus 132 ~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~--s~~~~~l~~~-~~ 206 (773)
.+..+.|............ ...+|+|+||+.+...... +....+++|||||||++.+.. ..+...+..+ ..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~ 210 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 210 (410)
T ss_dssp CEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTT
T ss_pred EEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccC
Confidence 6666666654443332221 3568999999998764332 233468999999999987654 2334444444 45
Q ss_pred ceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 004103 207 QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 286 (773)
Q Consensus 207 ~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv 286 (773)
...+++||||-. ++..++...... + ..+.... .
T Consensus 211 ~~~i~~SAT~~~----~~~~~~~~~~~~--------------~---------------------------~~~~~~~--~ 243 (410)
T 2j0s_A 211 TQVVLISATLPH----EILEMTNKFMTD--------------P---------------------------IRILVKR--D 243 (410)
T ss_dssp CEEEEEESCCCH----HHHTTGGGTCSS--------------C---------------------------EEECCCG--G
T ss_pred ceEEEEEcCCCH----HHHHHHHHHcCC--------------C---------------------------EEEEecC--c
Confidence 678999999842 222222111000 0 0000000 0
Q ss_pred hhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcch
Q 004103 287 EKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGK 366 (773)
Q Consensus 287 ~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K 366 (773)
...++......+.++ ....|
T Consensus 244 ~~~~~~~~~~~~~~~------------------------------------------------------------~~~~k 263 (410)
T 2j0s_A 244 ELTLEGIKQFFVAVE------------------------------------------------------------REEWK 263 (410)
T ss_dssp GCSCTTEEEEEEEES------------------------------------------------------------STTHH
T ss_pred cccCCCceEEEEEeC------------------------------------------------------------cHHhH
Confidence 000111111222111 01125
Q ss_pred HHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccc
Q 004103 367 FELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL 446 (773)
Q Consensus 367 ~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~ 446 (773)
+..|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++... +|++|+++++
T Consensus 264 ~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~~ 338 (410)
T 2j0s_A 264 FDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR---VLISTDVWAR 338 (410)
T ss_dssp HHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC---EEEECGGGSS
T ss_pred HHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCC---EEEECChhhC
Confidence 55566666554 345999999999999999999999999999999999999999999999988766 7999999999
Q ss_pred cCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 447 GLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 447 GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
|||++.+++||+||+||++..+.||+||++|.|+.. .++.|+++.
T Consensus 339 Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 383 (410)
T 2j0s_A 339 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKND 383 (410)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGG
T ss_pred cCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHH
Confidence 999999999999999999999999999999999764 455566654
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.2e-32 Score=293.08 Aligned_cols=312 Identities=14% Similarity=0.154 Sum_probs=216.1
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~ 130 (773)
.+|+|||.+++.++. ++.++++.++||+|||++++..+... ..++|||+|. .++.||..++.++.+ +
T Consensus 15 ~~l~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 84 (337)
T 2z0m_A 15 KNFTEVQSKTIPLML----QGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMD 84 (337)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcC
Confidence 379999999999988 47789999999999999887666542 3589999999 888999999999874 4
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChh--hHHHHHHHccc-
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQ- 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~--s~~~~~l~~~~- 205 (773)
..+..+.|.......... + ...+|+|+||+.+...... +....|++|||||||++.+.. ..+...+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~-~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~ 159 (337)
T 2z0m_A 85 TKVAEVYGGMPYKAQINR-V----RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSN 159 (337)
T ss_dssp CCEEEECTTSCHHHHHHH-H----TTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTT
T ss_pred CcEEEEECCcchHHHHhh-c----CCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCc
Confidence 667777775544332221 1 4589999999999764332 223468999999999985433 33344444444
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhH
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 285 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~d 285 (773)
....+++||||.......+.. ++..+. .+...
T Consensus 160 ~~~~~~~SAT~~~~~~~~~~~------------------~~~~~~---------------------------~~~~~--- 191 (337)
T 2z0m_A 160 RKITGLFSATIPEEIRKVVKD------------------FITNYE---------------------------EIEAC--- 191 (337)
T ss_dssp CSEEEEEESCCCHHHHHHHHH------------------HSCSCE---------------------------EEECS---
T ss_pred ccEEEEEeCcCCHHHHHHHHH------------------hcCCce---------------------------eeecc---
Confidence 345567899984221111110 110000 00000
Q ss_pred HhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcc
Q 004103 286 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 365 (773)
Q Consensus 286 v~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~ 365 (773)
...+......+.++..
T Consensus 192 --~~~~~~~~~~~~~~~~-------------------------------------------------------------- 207 (337)
T 2z0m_A 192 --IGLANVEHKFVHVKDD-------------------------------------------------------------- 207 (337)
T ss_dssp --GGGGGEEEEEEECSSS--------------------------------------------------------------
T ss_pred --cccCCceEEEEEeChH--------------------------------------------------------------
Confidence 0001111111111100
Q ss_pred hHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccc
Q 004103 366 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 445 (773)
Q Consensus 366 K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg 445 (773)
.......+. ...+.++||||+....++.+...|. .+..+||+++..+|.++++.|+++... +|++|++++
T Consensus 208 -~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~~ 277 (337)
T 2z0m_A 208 -WRSKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYD---MLITTDVAS 277 (337)
T ss_dssp -SHHHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECHHHH
T ss_pred -HHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCc---EEEEcCccc
Confidence 000011111 1357899999999999999998887 678999999999999999999998776 799999999
Q ss_pred ccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHH
Q 004103 446 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 503 (773)
Q Consensus 446 ~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~ 503 (773)
+|+|++.+++||+|++|||+..+.|++||++|.|+...+.+|.. .+..+.+.+...+
T Consensus 278 ~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 278 RGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp TTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred cCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 99999999999999999999999999999999999888877776 5555555554443
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.7e-32 Score=301.70 Aligned_cols=319 Identities=17% Similarity=0.209 Sum_probs=215.7
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~ 130 (773)
..|+|||.+++..++ ++.++|++++||+|||++++..+...+......+++|||+|. .++.||.+++.+++. +
T Consensus 61 ~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 61 EKPSAIQQRAILPCI----KGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHhHHHh----CCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 479999999999888 477899999999999999877666655443455689999999 788999999999863 4
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCCh--hhHHHHHHHcc-c
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTISGY-Q 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~--~s~~~~~l~~~-~ 205 (773)
..+..+.|........... . ....+|+|+|++.+...... +....+++|||||||++.+. ...+...+..+ .
T Consensus 137 ~~~~~~~~~~~~~~~~~~~-~--~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 213 (414)
T 3eiq_A 137 ASCHACIGGTNVRAEVQKL-Q--MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNS 213 (414)
T ss_dssp CCEEECCCCTTHHHHHHHH-T--TTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCT
T ss_pred ceEEEEECCcchHHHHHHH-h--cCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCC
Confidence 5666666655544333221 1 15689999999998775433 33345889999999998543 34455555555 4
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhH
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 285 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~d 285 (773)
....++|||||-. ++..++..... .+. .+.....
T Consensus 214 ~~~~i~~SAT~~~----~~~~~~~~~~~--------------~~~---------------------------~~~~~~~- 247 (414)
T 3eiq_A 214 NTQVVLLSATMPS----DVLEVTKKFMR--------------DPI---------------------------RILVKKE- 247 (414)
T ss_dssp TCEEEEECSCCCH----HHHHHHTTTCS--------------SCE---------------------------EECCCCC-
T ss_pred CCeEEEEEEecCH----HHHHHHHHHcC--------------CCE---------------------------EEEecCC-
Confidence 5677999999832 11111111100 000 0000000
Q ss_pred HhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcc
Q 004103 286 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 365 (773)
Q Consensus 286 v~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~ 365 (773)
....+......+.+. ....
T Consensus 248 -~~~~~~~~~~~~~~~------------------------------------------------------------~~~~ 266 (414)
T 3eiq_A 248 -ELTLEGIRQFYINVE------------------------------------------------------------REEW 266 (414)
T ss_dssp -CCCTTSCCEEEEECS------------------------------------------------------------SSTT
T ss_pred -ccCCCCceEEEEEeC------------------------------------------------------------hHHh
Confidence 000011111111111 1123
Q ss_pred hHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccc
Q 004103 366 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 445 (773)
Q Consensus 366 K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg 445 (773)
|+..+..++... .+.++||||+....++.+...|...|+.+..+||+++.++|..+++.|+++... +|++|++++
T Consensus 267 ~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 341 (414)
T 3eiq_A 267 KLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR---VLITTDLLA 341 (414)
T ss_dssp HHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC------CEEECSSCC
T ss_pred HHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCc---EEEECCccc
Confidence 566666666654 456999999999999999999999999999999999999999999999987765 799999999
Q ss_pred ccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 446 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 446 ~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
+|||++.+++||+||++||+..+.|++||++|.|+.. .++.|+++.
T Consensus 342 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 387 (414)
T 3eiq_A 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG--VAINMVTEE 387 (414)
T ss_dssp --CCGGGCSCEEESSCCSSTHHHHHHSCCC---------CEEEEECST
T ss_pred cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCc--eEEEEEcHH
Confidence 9999999999999999999999999999999999765 455666665
No 23
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=5.3e-31 Score=297.07 Aligned_cols=315 Identities=17% Similarity=0.184 Sum_probs=221.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHH-HHHHhcC----CCCCEEEEeCC-cchHHHHHHHHhh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA-YLLENKG----VTGPHVIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~-~l~~~~~----~~gp~LIVvP~-sll~qW~~E~~k~ 127 (773)
.+|+|+|.+++..++ .+.+.|++.+||+|||++++..+. .+..... ....+|||+|+ .|+.||..++.++
T Consensus 77 ~~pt~iQ~~ai~~i~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 77 KIPTPIQKCSIPVIS----SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 369999999999887 578899999999999998765544 4444321 23479999999 8899999999998
Q ss_pred cC--CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChh--hHHHHHH
Q 004103 128 AP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTI 201 (773)
Q Consensus 128 ~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~--s~~~~~l 201 (773)
+. .+.+.++.|........... ...++|+|+|++.+...... +...++++|||||||++.+.+ ..+...+
T Consensus 153 ~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~ 228 (434)
T 2db3_A 153 AFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIM 228 (434)
T ss_dssp TTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHH
T ss_pred hccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHH
Confidence 74 45666666654433322211 15689999999999765332 223467899999999987643 3444455
Q ss_pred Hcc---ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhh
Q 004103 202 SGY---QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 278 (773)
Q Consensus 202 ~~~---~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~ 278 (773)
..+ .....+++|||+- .++..+....... +..
T Consensus 229 ~~~~~~~~~q~l~~SAT~~----~~~~~~~~~~l~~-----------------------------------------~~~ 263 (434)
T 2db3_A 229 THVTMRPEHQTLMFSATFP----EEIQRMAGEFLKN-----------------------------------------YVF 263 (434)
T ss_dssp HCTTSCSSCEEEEEESCCC----HHHHHHHHTTCSS-----------------------------------------CEE
T ss_pred HhcCCCCCceEEEEeccCC----HHHHHHHHHhccC-----------------------------------------CEE
Confidence 443 4567899999973 1221111100000 000
Q ss_pred hhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhH
Q 004103 279 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKE 358 (773)
Q Consensus 279 lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~ 358 (773)
+. . .......+......+.+.
T Consensus 264 i~-~-~~~~~~~~~i~~~~~~~~--------------------------------------------------------- 284 (434)
T 2db3_A 264 VA-I-GIVGGACSDVKQTIYEVN--------------------------------------------------------- 284 (434)
T ss_dssp EE-E-SSTTCCCTTEEEEEEECC---------------------------------------------------------
T ss_pred EE-e-ccccccccccceEEEEeC---------------------------------------------------------
Confidence 00 0 000000011111111111
Q ss_pred HHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 004103 359 EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 438 (773)
Q Consensus 359 ~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~L 438 (773)
...|...|.+++.. .+.++||||+....++.+..+|...|+++..+||+++..+|..+++.|+++... +|
T Consensus 285 ----~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vL 354 (434)
T 2db3_A 285 ----KYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK---VL 354 (434)
T ss_dssp ----GGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCS---EE
T ss_pred ----cHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCc---EE
Confidence 12355555555554 345699999999999999999999999999999999999999999999998776 89
Q ss_pred EecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeC
Q 004103 439 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 492 (773)
Q Consensus 439 lSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~ 492 (773)
++|+++++|||++++++||+||+|+++..|+||+||++|.|+...+ +.|++.
T Consensus 355 vaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a--~~~~~~ 406 (434)
T 2db3_A 355 IATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA--TSFFDP 406 (434)
T ss_dssp EECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEE--EEEECT
T ss_pred EEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEE--EEEEec
Confidence 9999999999999999999999999999999999999999986544 445553
No 24
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.98 E-value=5.3e-31 Score=294.30 Aligned_cols=318 Identities=17% Similarity=0.225 Sum_probs=220.0
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHH-HHHHHhcC-----------------CCCCEEEEeCC-
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI-AYLLENKG-----------------VTGPHVIVAPK- 114 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali-~~l~~~~~-----------------~~gp~LIVvP~- 114 (773)
.+|+|+|.+++..++ .+.+.|+..+||+|||++++..+ ..+..... ....+|||+|+
T Consensus 36 ~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIK----EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHHc----cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 479999999999877 57889999999999999865544 44433221 12468999999
Q ss_pred cchHHHHHHHHhhcC--CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEcccccc
Q 004103 115 AVLPNWINEFSTWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRL 190 (773)
Q Consensus 115 sll~qW~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~l 190 (773)
.++.||.+++.+++. ++.+..+.|........... ....+|+|+|++.+...... +....+++|||||||++
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~ 187 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL----ERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRM 187 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHH
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh----hCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHh
Confidence 889999999998863 56777777765443333221 14689999999999765432 22336789999999998
Q ss_pred CChh--hHHHHHHHc--cc---cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHH
Q 004103 191 KNHE--CALAKTISG--YQ---IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQ 263 (773)
Q Consensus 191 kn~~--s~~~~~l~~--~~---~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~ 263 (773)
...+ ..+...+.. +. ....+++||||... ..++ +. .++..+.
T Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~-~~~~---~~--------------~~~~~~~------------- 236 (417)
T 2i4i_A 188 LDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKE-IQML---AR--------------DFLDEYI------------- 236 (417)
T ss_dssp HHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHH-HHHH---HH--------------HHCSSCE-------------
T ss_pred hccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHH-HHHH---HH--------------HHcCCCE-------------
Confidence 5432 333333332 21 35689999998321 1111 10 0000000
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhC
Q 004103 264 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 343 (773)
Q Consensus 264 ~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~ 343 (773)
.+. ... .....+......+.++
T Consensus 237 --------------~~~-~~~-~~~~~~~i~~~~~~~~------------------------------------------ 258 (417)
T 2i4i_A 237 --------------FLA-VGR-VGSTSENITQKVVWVE------------------------------------------ 258 (417)
T ss_dssp --------------EEE-EC-----CCSSEEEEEEECC------------------------------------------
T ss_pred --------------EEE-eCC-CCCCccCceEEEEEec------------------------------------------
Confidence 000 000 0000111111111111
Q ss_pred CCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHH
Q 004103 344 HPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTL 423 (773)
Q Consensus 344 hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~ 423 (773)
...|...+.+++... ..+.++||||+....++.+..+|...|+.+..+||+++.++|..+
T Consensus 259 -------------------~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~ 318 (417)
T 2i4i_A 259 -------------------ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEA 318 (417)
T ss_dssp -------------------GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred -------------------cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHH
Confidence 123555666666654 357799999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 424 LKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 424 i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
++.|+++... +|++|+++++|||++.+++||+||+||++..+.|++||++|.|+. -.++.|+++.
T Consensus 319 ~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 383 (417)
T 2i4i_A 319 LHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL--GLATSFFNER 383 (417)
T ss_dssp HHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CC--EEEEEEECGG
T ss_pred HHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCC--ceEEEEEccc
Confidence 9999988776 899999999999999999999999999999999999999999976 4455566654
No 25
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.98 E-value=3e-31 Score=293.29 Aligned_cols=315 Identities=16% Similarity=0.215 Sum_probs=218.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~ 130 (773)
.+|+|||.+++..++.. ++.++|++++||+|||++++..+...+......+++|||+|. .++.||.+++.++.. .
T Consensus 26 ~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 103 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTK 103 (395)
T ss_dssp CSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccC
Confidence 37999999999988741 237889999999999999877766655444455689999999 788999999998763 4
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChh---hHHHHHHHcc-
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE---CALAKTISGY- 204 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~---s~~~~~l~~~- 204 (773)
..+....+...... .....+|+|+||+.+...... +...++++|||||||++.+.. ......+..+
T Consensus 104 ~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~ 175 (395)
T 3pey_A 104 ITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP 175 (395)
T ss_dssp CCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSC
T ss_pred eeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCC
Confidence 55555555432211 114678999999999764322 223368999999999985421 2222233333
Q ss_pred ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhh
Q 004103 205 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 284 (773)
Q Consensus 205 ~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~ 284 (773)
.....+++||||... ..+ ++..+.+ .+. .+.....
T Consensus 176 ~~~~~i~~SAT~~~~-~~~---~~~~~~~--------------~~~---------------------------~~~~~~~ 210 (395)
T 3pey_A 176 KDTQLVLFSATFADA-VRQ---YAKKIVP--------------NAN---------------------------TLELQTN 210 (395)
T ss_dssp TTCEEEEEESCCCHH-HHH---HHHHHSC--------------SCE---------------------------EECCCGG
T ss_pred CCcEEEEEEecCCHH-HHH---HHHHhCC--------------CCe---------------------------EEEcccc
Confidence 346789999998321 111 1110000 000 0000000
Q ss_pred HHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhc
Q 004103 285 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 364 (773)
Q Consensus 285 dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s 364 (773)
....+......+.+. ...
T Consensus 211 --~~~~~~~~~~~~~~~------------------------------------------------------------~~~ 228 (395)
T 3pey_A 211 --EVNVDAIKQLYMDCK------------------------------------------------------------NEA 228 (395)
T ss_dssp --GCSCTTEEEEEEECS------------------------------------------------------------SHH
T ss_pred --ccccccccEEEEEcC------------------------------------------------------------chH
Confidence 000111111111111 012
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
.|...+..++... .+.++||||+....++.+...|...|+.+..+||+++.++|..+++.|+++... +|++|+++
T Consensus 229 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~ 303 (395)
T 3pey_A 229 DKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSK---VLITTNVL 303 (395)
T ss_dssp HHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCC---EEEECGGG
T ss_pred HHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCC---EEEECChh
Confidence 2444555555443 467999999999999999999999999999999999999999999999998776 79999999
Q ss_pred cccCCcccCCeeEEeCCCC------ChhhHHHHhhhhhhcCCcCeEEEEEEEeC
Q 004103 445 GLGLNLQTADTVIIFDSDW------NPQMDQQAEDRAHRIGQKKEVRVFVLVSV 492 (773)
Q Consensus 445 g~GLNL~~ad~VI~~D~~w------Np~~~~Qa~gRa~RiGQ~k~V~V~rLi~~ 492 (773)
++|||++++++||+||+|| |+..+.|++||++|.|+...+ +.|+..
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~ 355 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVA--ISFVHD 355 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEE--EEEECS
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceE--EEEEec
Confidence 9999999999999999999 999999999999999976544 444443
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=1.6e-32 Score=303.79 Aligned_cols=317 Identities=16% Similarity=0.206 Sum_probs=115.4
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~ 130 (773)
.+|+|||.+++.+++. +.+++++++||+|||++++..+...+......+++|||||. .++.||.+++.++++ +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 4799999999999885 67899999999999999766555544433445689999999 888999999999874 4
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCC--hhhHHHHHHHcc-c
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKN--HECALAKTISGY-Q 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn--~~s~~~~~l~~~-~ 205 (773)
..+..+.|.......... + ...+|+|+||+.+...... +....+++|||||||++.. ....+...+..+ .
T Consensus 118 ~~~~~~~g~~~~~~~~~~-~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~ 192 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAEG-L----RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP 192 (394)
T ss_dssp CCEEEECSSCCHHHHHHH-H----HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT
T ss_pred eeEEEEeCCCchHHHHhh-c----CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCC
Confidence 677777776543332221 1 2568999999998764332 2234789999999999843 233444444444 4
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhH
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 285 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~d 285 (773)
..+.++|||||-.. ..++ + ..++..+.
T Consensus 193 ~~~~i~~SAT~~~~-~~~~---~--------------~~~~~~~~----------------------------------- 219 (394)
T 1fuu_A 193 TTQVVLLSATMPND-VLEV---T--------------TKFMRNPV----------------------------------- 219 (394)
T ss_dssp TCEEEEECSSCCHH-HHHH---H--------------HHHCCSCE-----------------------------------
T ss_pred CceEEEEEEecCHH-HHHH---H--------------HHhcCCCe-----------------------------------
Confidence 56789999998421 1111 0 00000000
Q ss_pred HhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcc
Q 004103 286 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 365 (773)
Q Consensus 286 v~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~ 365 (773)
. +.+....... ..+. .. +.. .-....
T Consensus 220 ---------~--~~~~~~~~~~---~~~~------------------~~-----------~~~-----------~~~~~~ 245 (394)
T 1fuu_A 220 ---------R--ILVKKDELTL---EGIK------------------QF-----------YVN-----------VEEEEY 245 (394)
T ss_dssp ---------E--EEECC---------------------------------------------------------------
T ss_pred ---------E--EEecCccccC---CCce------------------EE-----------EEE-----------cCchhh
Confidence 0 0000000000 0000 00 000 000112
Q ss_pred hHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccc
Q 004103 366 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 445 (773)
Q Consensus 366 K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg 445 (773)
|...+..++... .+.++||||+....++.+...|...|+.+..+||+++.++|..+++.|+++... +|++|++++
T Consensus 246 ~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~~ 320 (394)
T 1fuu_A 246 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLLA 320 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCc---EEEECChhh
Confidence 344445555443 356999999999999999999999999999999999999999999999987765 799999999
Q ss_pred ccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 446 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 446 ~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
+|+|++.+++||++|++|++..+.|++||++|.|+...+ +.|+++.
T Consensus 321 ~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 366 (394)
T 1fuu_A 321 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA--INFVTNE 366 (394)
T ss_dssp ------------------------------------------------
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceE--EEEEchh
Confidence 999999999999999999999999999999999976654 4445544
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=6.3e-30 Score=286.19 Aligned_cols=316 Identities=17% Similarity=0.203 Sum_probs=223.9
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC-Cc
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SI 131 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p-~~ 131 (773)
.+|+|||.+++..++ ++.+.|+..+||+|||+.++..+..+. ...+.+|||+|+ .++.||..++.++++ ++
T Consensus 20 ~~~~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp SCCCHHHHHHHHHHT----TTCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 478999999999887 467899999999999997666655544 334589999999 889999999999886 77
Q ss_pred eEEEecCChhHH--HHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCC-------------hhhH
Q 004103 132 AAVVYDGRPDER--KAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN-------------HECA 196 (773)
Q Consensus 132 ~v~~~~g~~~~r--~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn-------------~~s~ 196 (773)
.+..+.|..... ......+.. +.++|+|+|++.+......+....+++|||||||++.. ....
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l~~--~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~ 170 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSFEE--DDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 170 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHH--TCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHH
T ss_pred eEEEEECCCChhhHHHHHHHhhc--CCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHH
Confidence 888888866542 222222222 45899999999998877777777899999999998632 1122
Q ss_pred -HHHHHHcc------------ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHH
Q 004103 197 -LAKTISGY------------QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQ 263 (773)
Q Consensus 197 -~~~~l~~~------------~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~ 263 (773)
+...+..+ .....+++||||........+ +...+....
T Consensus 171 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~----------------~~~~~~~~~------------- 221 (414)
T 3oiy_A 171 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTV------------- 221 (414)
T ss_dssp HHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH----------------HHHHHSCCS-------------
T ss_pred HHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH----------------HHHhhccCc-------------
Confidence 33333333 456789999997655432110 000000000
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhC
Q 004103 264 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 343 (773)
Q Consensus 264 ~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~ 343 (773)
.. ....+......+ +
T Consensus 222 ----------------~~-----~~~~~~~i~~~~-~------------------------------------------- 236 (414)
T 3oiy_A 222 ----------------GR-----LVSVARNITHVR-I------------------------------------------- 236 (414)
T ss_dssp ----------------SC-----CCCCCCSEEEEE-E-------------------------------------------
T ss_pred ----------------Cc-----cccccccchhee-e-------------------------------------------
Confidence 00 000011111110 0
Q ss_pred CCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEE-EEcCCCCHHHHHH
Q 004103 344 HPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFL-RLDGSTKTEERGT 422 (773)
Q Consensus 344 hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~-~i~G~~~~~eR~~ 422 (773)
...|...|..++.. .+.++||||+....++.+...|...|+.+. .+||. +|.
T Consensus 237 -------------------~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~- 289 (414)
T 3oiy_A 237 -------------------SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN- 289 (414)
T ss_dssp -------------------SSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH-
T ss_pred -------------------ccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH-
Confidence 01244455555555 357999999999999999999999999998 89984 444
Q ss_pred HHHhhcCCCCCcEEEEEe----cccccccCCccc-CCeeEEeCCC--CChhhHHHHhhhhhhcCCc--CeEEEEEEEeCC
Q 004103 423 LLKQFNAPDSPYFMFLLS----TRAGGLGLNLQT-ADTVIIFDSD--WNPQMDQQAEDRAHRIGQK--KEVRVFVLVSVG 493 (773)
Q Consensus 423 ~i~~Fn~~~~~~~v~LlS----t~agg~GLNL~~-ad~VI~~D~~--wNp~~~~Qa~gRa~RiGQ~--k~V~V~rLi~~~ 493 (773)
++.|+++..+ +|++ |+++++|||++. +++||+||+| +++..|.|++||++|.|+. +...++.|+
T Consensus 290 -~~~f~~g~~~---vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--- 362 (414)
T 3oiy_A 290 -FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--- 362 (414)
T ss_dssp -HHHHHTTSCS---EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC---
T ss_pred -HHHHhCCCCe---EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE---
Confidence 9999998876 6788 999999999999 9999999999 9999999999999999986 566677776
Q ss_pred CHHHHHHHHHHHHH
Q 004103 494 SIEEVILERAKQKM 507 (773)
Q Consensus 494 tiEe~i~~~~~~K~ 507 (773)
-|...+..+.+.+
T Consensus 363 -~~~~~~~~l~~~~ 375 (414)
T 3oiy_A 363 -EDEEIFESLKTRL 375 (414)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHh
Confidence 2444555444443
No 28
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=3.5e-30 Score=296.66 Aligned_cols=303 Identities=18% Similarity=0.217 Sum_probs=222.2
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~ 132 (773)
..|+|+|.+++..++ ++.++++..+||+|||+.++..+.. . .+.+|||+|. +++.||...+.++. +.
T Consensus 24 ~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l~---~---~g~~lvi~P~~aL~~q~~~~l~~~g--i~ 91 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVL----SGRDCLVVMPTGGGKSLCYQIPALL---L---NGLTVVVSPLISLMKDQVDQLQANG--VA 91 (523)
T ss_dssp SSCCTTHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHH---S---SSEEEEECSCHHHHHHHHHHHHHTT--CC
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEECCCCcHHHHHHHHHHHH---h---CCCEEEECChHHHHHHHHHHHHHcC--Cc
Confidence 478999999999988 5778999999999999876543321 1 3689999999 88899999999874 45
Q ss_pred EEEecCChh--HHHHHHHHHHhhcCCccEEEcCHHHHHHh--HHHHhhcCeeEEEEccccccCChhh-------HHHHHH
Q 004103 133 AVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKNHEC-------ALAKTI 201 (773)
Q Consensus 133 v~~~~g~~~--~r~~~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaH~lkn~~s-------~~~~~l 201 (773)
+..+.+... ........... +.++|+++|++.+... ...+....+.+|||||||++...+. .+....
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~--~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~ 169 (523)
T 1oyw_A 92 AACLNSTQTREQQLEVMTGCRT--GQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLR 169 (523)
T ss_dssp EEEECTTSCHHHHHHHHHHHHH--TCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHH
T ss_pred EEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHH
Confidence 555555433 22222222222 6789999999999643 3445567899999999999965431 222233
Q ss_pred HccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhh
Q 004103 202 SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 281 (773)
Q Consensus 202 ~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR 281 (773)
..++...+++|||||......++...+.+-.|.++...
T Consensus 170 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------------------------------------------ 207 (523)
T 1oyw_A 170 QRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS------------------------------------------ 207 (523)
T ss_dssp HHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC------------------------------------------
T ss_pred HhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC------------------------------------------
Confidence 44566788999999976555555555443222111000
Q ss_pred hhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHH
Q 004103 282 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 361 (773)
Q Consensus 282 ~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~ 361 (773)
...|.....+..
T Consensus 208 ------~~r~~l~~~v~~-------------------------------------------------------------- 219 (523)
T 1oyw_A 208 ------FDRPNIRYMLME-------------------------------------------------------------- 219 (523)
T ss_dssp ------CCCTTEEEEEEE--------------------------------------------------------------
T ss_pred ------CCCCceEEEEEe--------------------------------------------------------------
Confidence 001111111100
Q ss_pred hhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEec
Q 004103 362 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 441 (773)
Q Consensus 362 ~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt 441 (773)
...+...|.+++... .+.++||||+....++.+...|...|+.+..+||+++.++|..+++.|.+++.. +|++|
T Consensus 220 -~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~---vlVaT 293 (523)
T 1oyw_A 220 -KFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ---IVVAT 293 (523)
T ss_dssp -CSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEC
T ss_pred -CCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEEe
Confidence 012334445555442 577999999999999999999999999999999999999999999999998876 79999
Q ss_pred ccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEE
Q 004103 442 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRV 486 (773)
Q Consensus 442 ~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V 486 (773)
.++|+|||+++++.||+||+|+|+..|.|++||++|.|+...+.+
T Consensus 294 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 294 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp TTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred chhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 999999999999999999999999999999999999998766544
No 29
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=3.3e-30 Score=287.05 Aligned_cols=329 Identities=16% Similarity=0.211 Sum_probs=222.8
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc---C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---P 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~---p 129 (773)
..|+|+|.+++..++.. .+.+.|++.+||+|||++++..+...+......+.+|||+|. .++.||...+.++. +
T Consensus 46 ~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 47999999999988841 247889999999999999866665554444445589999999 78888888777764 5
Q ss_pred CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH---HhhcCeeEEEEccccccCC---hhhHHHHHHHc
Q 004103 130 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKN---HECALAKTISG 203 (773)
Q Consensus 130 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~---l~~~~~~~vIiDEaH~lkn---~~s~~~~~l~~ 203 (773)
...+....+....... .....+|+|+|++.+...... +....+++|||||||++.. ........+..
T Consensus 124 ~~~~~~~~~~~~~~~~-------~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~ 196 (412)
T 3fht_A 124 ELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 196 (412)
T ss_dssp TCCEEEECTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHT
T ss_pred cceEEEeecCcchhhh-------hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhh
Confidence 6677766654432111 114578999999999765422 2234689999999999743 22223333344
Q ss_pred c-ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhh
Q 004103 204 Y-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 282 (773)
Q Consensus 204 ~-~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~ 282 (773)
+ .....+++||||-. +++.++....+. + ..+.-.
T Consensus 197 ~~~~~~~i~~SAT~~~----~~~~~~~~~~~~--------------~---------------------------~~~~~~ 231 (412)
T 3fht_A 197 LPRNCQMLLFSATFED----SVWKFAQKVVPD--------------P---------------------------NVIKLK 231 (412)
T ss_dssp SCTTCEEEEEESCCCH----HHHHHHHHHSSS--------------C---------------------------EEECCC
T ss_pred CCCCceEEEEEeecCH----HHHHHHHHhcCC--------------C---------------------------eEEeec
Confidence 3 34578999999842 111111111000 0 000000
Q ss_pred hhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHh
Q 004103 283 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIR 362 (773)
Q Consensus 283 k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~ 362 (773)
. .....+......+.+. .
T Consensus 232 -~-~~~~~~~~~~~~~~~~------------------------------------------------------------~ 249 (412)
T 3fht_A 232 -R-EEETLDTIKQYYVLCS------------------------------------------------------------S 249 (412)
T ss_dssp -G-GGSSCTTEEEEEEECS------------------------------------------------------------S
T ss_pred -c-ccccccCceEEEEEcC------------------------------------------------------------C
Confidence 0 0000111111111111 0
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
...|+..+..++... .+.++||||+....++.+...|...|+.+..+||+++.++|..+++.|+++... +|++|+
T Consensus 250 ~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~ 324 (412)
T 3fht_A 250 RDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK---VLVTTN 324 (412)
T ss_dssp HHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS---EEEECG
T ss_pred hHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc---EEEEcC
Confidence 122455555555543 467999999999999999999999999999999999999999999999998776 799999
Q ss_pred cccccCCcccCCeeEEeCCCCCh------hhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHH
Q 004103 443 AGGLGLNLQTADTVIIFDSDWNP------QMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 506 (773)
Q Consensus 443 agg~GLNL~~ad~VI~~D~~wNp------~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K 506 (773)
++++|||++++++||+||+||++ ..+.|++||++|.|+... ++.|+.. .-+..++..+.++
T Consensus 325 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~-~~~~~~~~~i~~~ 391 (412)
T 3fht_A 325 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL--AVNMVDS-KHSMNILNRIQEH 391 (412)
T ss_dssp GGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEE--EEEEECS-HHHHHHHHHHHHH
T ss_pred ccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCce--EEEEEcC-hhhHHHHHHHHHH
Confidence 99999999999999999999876 699999999999996544 4444443 2334555544443
No 30
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.97 E-value=1.5e-29 Score=294.62 Aligned_cols=311 Identities=15% Similarity=0.166 Sum_probs=220.1
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~ 132 (773)
..|+|+|.+++..++ ++.++|+..+||+|||+.++..+.. ..+.+|||+|. +|+.||...+.++ ++.
T Consensus 43 ~~~rp~Q~~~i~~il----~g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 43 EKFRPLQLETINVTM----AGKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp CSCCTTHHHHHHHHH----TTCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 479999999999988 4788999999999999876544421 24689999999 8999999999998 456
Q ss_pred EEEecCChh--HHHHHHHHHHhhcCCccEEEcCHHHHHHh---HHHH----hhcCeeEEEEccccccCChh-------hH
Q 004103 133 AVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRD---RQYL----KKVQWIYMIVDEGHRLKNHE-------CA 196 (773)
Q Consensus 133 v~~~~g~~~--~r~~~~~~~~~~~~~~~VvItTye~l~~~---~~~l----~~~~~~~vIiDEaH~lkn~~-------s~ 196 (773)
+..+.|... +.......+....+.++|+++|++.+... ...+ ....+.+|||||||++...+ ..
T Consensus 111 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~ 190 (591)
T 2v1x_A 111 ATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKA 190 (591)
T ss_dssp EEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGG
T ss_pred EEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHH
Confidence 666666432 33333333322336889999999988542 2222 23378999999999986532 12
Q ss_pred HHHHHHccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhh
Q 004103 197 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 276 (773)
Q Consensus 197 ~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p 276 (773)
+......++...+++|||||......++...|..-.+..+..
T Consensus 191 l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-------------------------------------- 232 (591)
T 2v1x_A 191 LGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-------------------------------------- 232 (591)
T ss_dssp GGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC--------------------------------------
T ss_pred HHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec--------------------------------------
Confidence 223334556778999999996544444433332211100000
Q ss_pred hhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchh
Q 004103 277 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 356 (773)
Q Consensus 277 ~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~ 356 (773)
....|.....+...+..
T Consensus 233 ----------~~~r~nl~~~v~~~~~~----------------------------------------------------- 249 (591)
T 2v1x_A 233 ----------SFNRPNLYYEVRQKPSN----------------------------------------------------- 249 (591)
T ss_dssp ----------CCCCTTEEEEEEECCSS-----------------------------------------------------
T ss_pred ----------CCCCcccEEEEEeCCCc-----------------------------------------------------
Confidence 00011111111110000
Q ss_pred hHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEE
Q 004103 357 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 436 (773)
Q Consensus 357 ~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v 436 (773)
...++..|.+++... ..+.++||||.....++.+...|...|+.+..+||+++.++|..+++.|.++...
T Consensus 250 ------~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~--- 319 (591)
T 2v1x_A 250 ------TEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ--- 319 (591)
T ss_dssp ------HHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS---
T ss_pred ------HHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe---
Confidence 001223333343322 2578999999999999999999999999999999999999999999999998876
Q ss_pred EEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEE
Q 004103 437 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 487 (773)
Q Consensus 437 ~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~ 487 (773)
+||+|.++|+|||+++++.||+||+|+++..|.|++||++|.|+...+.++
T Consensus 320 VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 320 VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 899999999999999999999999999999999999999999987665554
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.96 E-value=1.7e-28 Score=286.63 Aligned_cols=337 Identities=20% Similarity=0.221 Sum_probs=220.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC----CCCCEEEEeCC-cchHHHHHHHHhhc
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG----VTGPHVIVAPK-AVLPNWINEFSTWA 128 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~----~~gp~LIVvP~-sll~qW~~E~~k~~ 128 (773)
.+|+|||.+++..++. ..+.+.|+..+||+|||++++..+...+.... ....+|||+|+ .|+.||..++.+++
T Consensus 42 ~~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~ 119 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 119 (579)
T ss_dssp SSCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHH
Confidence 3699999999988872 13556789999999999987665555444322 23478999999 88899999999864
Q ss_pred ------CCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHH---hhcCeeEEEEccccccCChh--hHH
Q 004103 129 ------PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL---KKVQWIYMIVDEGHRLKNHE--CAL 197 (773)
Q Consensus 129 ------p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l---~~~~~~~vIiDEaH~lkn~~--s~~ 197 (773)
+...+....|............ . ..++|+|+|++.+....... ....+++|||||||++.... ..+
T Consensus 120 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~--~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~ 196 (579)
T 3sqw_A 120 DMNYGLKKYACVSLVGGTDFRAAMNKMN-K--LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDL 196 (579)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHHHHHH-H--HCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred hhcccccceEEEEEECCccHHHHHHHHh-c--CCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHH
Confidence 3455666666554433332221 1 46799999999997654332 23468899999999987543 222
Q ss_pred HHHHHcc---c-----cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHH
Q 004103 198 AKTISGY---Q-----IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRR 269 (773)
Q Consensus 198 ~~~l~~~---~-----~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~ 269 (773)
...+..+ . ....+++|||+-. ...++ +..+... +..
T Consensus 197 ~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~---~~~~l~~--------------~~~------------------ 240 (579)
T 3sqw_A 197 ETISGILNEKNSKSADNIKTLLFSATLDD-KVQKL---ANNIMNK--------------KEC------------------ 240 (579)
T ss_dssp HHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHH---TTTTCCS--------------SEE------------------
T ss_pred HHHHHHhhhhhcccccCceEEEEeccCCh-HHHHH---HHHHcCC--------------Cce------------------
Confidence 2222222 1 4478999999742 11111 1110000 000
Q ss_pred HHhhhhhhhhhhhhhHHhhcCCCc-eeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcc
Q 004103 270 LHHVIRPFILRRKKDEVEKYLPGK-SQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLF 348 (773)
Q Consensus 270 L~~~L~p~~lRR~k~dv~~~LP~k-~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~ 348 (773)
..+...... ....... ....+.++-.
T Consensus 241 -------~~~~~~~~~-~~~~~~~i~~~~~~~~~~--------------------------------------------- 267 (579)
T 3sqw_A 241 -------LFLDTVDKN-EPEAHERIDQSVVISEKF--------------------------------------------- 267 (579)
T ss_dssp -------EEEESSCSS-SCSSCTTEEEEEEEESST---------------------------------------------
T ss_pred -------EEEeecCcc-ccccccccceEEEEecch---------------------------------------------
Confidence 000000000 0000000 0111111100
Q ss_pred cccccchhhHHHHhhcchHHHHHHHHHHhh--hcCCcEEEEeecHHHHHHHHHHHHhC---CCeEEEEcCCCCHHHHHHH
Q 004103 349 VGEYNMWRKEEIIRASGKFELLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIYLKLN---DFKFLRLDGSTKTEERGTL 423 (773)
Q Consensus 349 ~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~--~~g~kvLIFsq~~~~ld~L~~~L~~~---g~~~~~i~G~~~~~eR~~~ 423 (773)
...+...+..++..+. ..+.++||||.....++.+...|... |+.+..+||+++..+|..+
T Consensus 268 --------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 268 --------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp --------------THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred --------------hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 0011122223333222 35789999999999999999999876 9999999999999999999
Q ss_pred HHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHH
Q 004103 424 LKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 503 (773)
Q Consensus 424 i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~ 503 (773)
++.|+++... +||+|+++++|||++.+++||+||+|+++..|+|++||++|.|+...+ +.|++.. |...+..+
T Consensus 334 ~~~F~~g~~~---vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~~~~~~--e~~~~~~l 406 (579)
T 3sqw_A 334 VKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS--VLFICKD--ELPFVREL 406 (579)
T ss_dssp HHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE--EEEEEGG--GHHHHHHH
T ss_pred HHHhhcCCCe---EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceE--EEEEccc--HHHHHHHH
Confidence 9999987765 799999999999999999999999999999999999999999975444 4455554 44555444
Q ss_pred HH
Q 004103 504 KQ 505 (773)
Q Consensus 504 ~~ 505 (773)
.+
T Consensus 407 ~~ 408 (579)
T 3sqw_A 407 ED 408 (579)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 32
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.96 E-value=4.1e-28 Score=282.39 Aligned_cols=337 Identities=20% Similarity=0.218 Sum_probs=218.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC----CCCCEEEEeCC-cchHHHHHHHHhhc
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG----VTGPHVIVAPK-AVLPNWINEFSTWA 128 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~----~~gp~LIVvP~-sll~qW~~E~~k~~ 128 (773)
.+|+|+|.+++..++. ..+.+.|++.+||+|||++++..+...+.... ....+|||+|+ .|+.||..++.+++
T Consensus 93 ~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~ 170 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 170 (563)
T ss_dssp SSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHH
Confidence 3699999999988872 13567799999999999997665555444332 12378999999 88899999999863
Q ss_pred ------CCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHH---hhcCeeEEEEccccccCChh--hHH
Q 004103 129 ------PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL---KKVQWIYMIVDEGHRLKNHE--CAL 197 (773)
Q Consensus 129 ------p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l---~~~~~~~vIiDEaH~lkn~~--s~~ 197 (773)
+...+..+.|............ . ..++|+|+|++.+....... ....+++|||||||++.... ..+
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~ 247 (563)
T 3i5x_A 171 DMNYGLKKYACVSLVGGTDFRAAMNKMN-K--LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDL 247 (563)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHHHHHH-H--HCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred hhccccCceeEEEEECCcCHHHHHHHHh-c--CCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHH
Confidence 3345666666554333332211 1 46799999999997654332 22358899999999986543 222
Q ss_pred HHHHHcc--------ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHH
Q 004103 198 AKTISGY--------QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRR 269 (773)
Q Consensus 198 ~~~l~~~--------~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~ 269 (773)
...+..+ .....+++||||-. ...++ +..+... +..
T Consensus 248 ~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~---~~~~~~~--------------~~~------------------ 291 (563)
T 3i5x_A 248 ETISGILNEKNSKSADNIKTLLFSATLDD-KVQKL---ANNIMNK--------------KEC------------------ 291 (563)
T ss_dssp HHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHH---TTTTCCS--------------SEE------------------
T ss_pred HHHHHhhhhccccCccCceEEEEEccCCH-HHHHH---HHHhcCC--------------Cce------------------
Confidence 2222222 13468999999742 11211 1111000 000
Q ss_pred HHhhhhhhhhhhhhhHHhhcCCCc-eeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcc
Q 004103 270 LHHVIRPFILRRKKDEVEKYLPGK-SQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLF 348 (773)
Q Consensus 270 L~~~L~p~~lRR~k~dv~~~LP~k-~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~ 348 (773)
..+..... ........ ....+.++..
T Consensus 292 -------~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------------------------------------- 318 (563)
T 3i5x_A 292 -------LFLDTVDK-NEPEAHERIDQSVVISEKF--------------------------------------------- 318 (563)
T ss_dssp -------EEEESSCS-SSCSSCTTEEEEEEEESST---------------------------------------------
T ss_pred -------EEEeccCC-CCccccccCceEEEECchh---------------------------------------------
Confidence 00000000 00000000 0111111100
Q ss_pred cccccchhhHHHHhhcchHHHHHHHHHHhh--hcCCcEEEEeecHHHHHHHHHHHHhC---CCeEEEEcCCCCHHHHHHH
Q 004103 349 VGEYNMWRKEEIIRASGKFELLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIYLKLN---DFKFLRLDGSTKTEERGTL 423 (773)
Q Consensus 349 ~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~--~~g~kvLIFsq~~~~ld~L~~~L~~~---g~~~~~i~G~~~~~eR~~~ 423 (773)
.......+..+...+. ..+.++||||+....++.+...|... |+.+..+||+++..+|..+
T Consensus 319 --------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~ 384 (563)
T 3i5x_A 319 --------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 384 (563)
T ss_dssp --------------THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred --------------HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Confidence 0001112222222222 45789999999999999999999876 9999999999999999999
Q ss_pred HHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHH
Q 004103 424 LKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 503 (773)
Q Consensus 424 i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~ 503 (773)
++.|+++... +||+|+++++|||++++++||+||+|+++..|+|++||++|.|+.. .++.|++.. |...+..+
T Consensus 385 ~~~f~~g~~~---vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~--e~~~~~~l 457 (563)
T 3i5x_A 385 VKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEG--SSVLFICKD--ELPFVREL 457 (563)
T ss_dssp HHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCE--EEEEEEEGG--GHHHHHHH
T ss_pred HHHHhcCCCC---EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCc--eEEEEEchh--HHHHHHHH
Confidence 9999987765 7999999999999999999999999999999999999999999654 444455554 44444444
Q ss_pred HH
Q 004103 504 KQ 505 (773)
Q Consensus 504 ~~ 505 (773)
..
T Consensus 458 ~~ 459 (563)
T 3i5x_A 458 ED 459 (563)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 33
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.9e-29 Score=289.98 Aligned_cols=313 Identities=16% Similarity=0.181 Sum_probs=192.8
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCceE
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAA 133 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v 133 (773)
.|+|||.+++..++.. .+.++|+..+||+|||++++..+...+......+.+|||+|. .++.||.+++.++++...+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 5899999999988741 137889999999999999877666655544445689999999 7899999999999864433
Q ss_pred EEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCC---hhhHHHHHHHccc-cc
Q 004103 134 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKN---HECALAKTISGYQ-IQ 207 (773)
Q Consensus 134 ~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn---~~s~~~~~l~~~~-~~ 207 (773)
.+..+....... .....++|+|+|++.+...... +....+++|||||||++.. ........+..+. ..
T Consensus 219 ~~~~~~~~~~~~------~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~ 292 (508)
T 3fho_A 219 KTAFGIKDSVPK------GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNT 292 (508)
T ss_dssp CEEC----------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTC
T ss_pred eEEEEeCCcccc------cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCC
Confidence 332222211110 0114689999999998764321 2234689999999999854 2223333334443 45
Q ss_pred eEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHHh
Q 004103 208 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVE 287 (773)
Q Consensus 208 ~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~ 287 (773)
..++|||||- +...++.. .+..... .+.-.....
T Consensus 293 ~~i~lSAT~~-~~~~~~~~------------------~~~~~~~--------------------------~i~~~~~~~- 326 (508)
T 3fho_A 293 QIVLFSATFS-ERVEKYAE------------------RFAPNAN--------------------------EIRLKTEEL- 326 (508)
T ss_dssp EEEEEESCCS-THHHHHHH------------------HHSTTCE--------------------------EECCCCCC--
T ss_pred eEEEEeCCCC-HHHHHHHH------------------HhcCCCe--------------------------EEEeccccC-
Confidence 6799999983 22222211 1100000 000000000
Q ss_pred hcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchH
Q 004103 288 KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKF 367 (773)
Q Consensus 288 ~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~ 367 (773)
..+......+.+. ....|.
T Consensus 327 -~~~~~~~~~~~~~------------------------------------------------------------~~~~k~ 345 (508)
T 3fho_A 327 -SVEGIKQLYMDCQ------------------------------------------------------------SEEHKY 345 (508)
T ss_dssp ----CCCCEEEEC--------------------------------------------------------------CHHHH
T ss_pred -CcccceEEEEECC------------------------------------------------------------chHHHH
Confidence 0000111111110 112244
Q ss_pred HHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccccc
Q 004103 368 ELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLG 447 (773)
Q Consensus 368 ~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~G 447 (773)
..+..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++..+ +|++|+++++|
T Consensus 346 ~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~---VLVaT~~l~~G 420 (508)
T 3fho_A 346 NVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSK---VLVTTNVIARG 420 (508)
T ss_dssp HHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCC---CCEECC-----
T ss_pred HHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe---EEEeCChhhcC
Confidence 4555555443 467999999999999999999999999999999999999999999999998876 79999999999
Q ss_pred CCcccCCeeEEeCCC------CChhhHHHHhhhhhhcCCcCeEEEE
Q 004103 448 LNLQTADTVIIFDSD------WNPQMDQQAEDRAHRIGQKKEVRVF 487 (773)
Q Consensus 448 LNL~~ad~VI~~D~~------wNp~~~~Qa~gRa~RiGQ~k~V~V~ 487 (773)
||++++++||++|++ +++..+.|++||++|.|+...+.++
T Consensus 421 iDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 421 IDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred CCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 999999999999999 7899999999999999976555443
No 34
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.96 E-value=1.2e-27 Score=297.44 Aligned_cols=308 Identities=18% Similarity=0.218 Sum_probs=220.0
Q ss_pred CCCchHHHHHHHHHHHHhhcCCC--CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNL--NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP 129 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~--~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p 129 (773)
+.+++|+|.+++..++..+.++. ++|++++||+|||++++.++...... ...+|||||+ .++.||..+|.++++
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt~~La~Q~~~~~~~~~~ 677 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPTTLLAQQHYDNFRDRFA 677 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEechHHHHHHHHHHHHHHhh
Confidence 46789999999999998665555 78999999999999987655544332 3489999999 688899999998886
Q ss_pred C--ceEEEecCC--hhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc-
Q 004103 130 S--IAAVVYDGR--PDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY- 204 (773)
Q Consensus 130 ~--~~v~~~~g~--~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~- 204 (773)
. +.+..+.+. ..++......+.. +..+|+|+|++.+.++ +...++++|||||+|++.. .....+..+
T Consensus 678 ~~~i~v~~l~~~~~~~~~~~~~~~l~~--g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH~~g~---~~~~~l~~l~ 749 (1151)
T 2eyq_A 678 NWPVRIEMISRFRSAKEQTQILAEVAE--GKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRFGV---RHKERIKAMR 749 (1151)
T ss_dssp TTTCCEEEESTTSCHHHHHHHHHHHHT--TCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGSCH---HHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHhCC---ccccccceEEEechHhcCh---HHHHHHHHhc
Confidence 4 566777663 3334333333322 5789999999887543 2334789999999999743 334445544
Q ss_pred ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhh
Q 004103 205 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 284 (773)
Q Consensus 205 ~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~ 284 (773)
...++++|||||+.+.+......+. .+. .
T Consensus 750 ~~~~vl~lSATp~p~~l~~~~~~~~--~~~-------------------------------------------~------ 778 (1151)
T 2eyq_A 750 ANVDILTLTATPIPRTLNMAMSGMR--DLS-------------------------------------------I------ 778 (1151)
T ss_dssp TTSEEEEEESSCCCHHHHHHHTTTS--EEE-------------------------------------------E------
T ss_pred CCCCEEEEcCCCChhhHHHHHhcCC--Cce-------------------------------------------E------
Confidence 3467899999998654332211100 000 0
Q ss_pred HHhhcCCCcee---EEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHH
Q 004103 285 EVEKYLPGKSQ---VILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 361 (773)
Q Consensus 285 dv~~~LP~k~e---~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~ 361 (773)
.. .|+... .....+.
T Consensus 779 --i~-~~~~~r~~i~~~~~~~----------------------------------------------------------- 796 (1151)
T 2eyq_A 779 --IA-TPPARRLAVKTFVREY----------------------------------------------------------- 796 (1151)
T ss_dssp --CC-CCCCBCBCEEEEEEEC-----------------------------------------------------------
T ss_pred --Ee-cCCCCccccEEEEecC-----------------------------------------------------------
Confidence 00 111100 0000000
Q ss_pred hhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEE
Q 004103 362 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 439 (773)
Q Consensus 362 ~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~Ll 439 (773)
.+......++..+ ..|.+++|||+....++.+.+.|... ++.+..+||.++..+|.+++++|+++..+ +||
T Consensus 797 ---~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~---VLV 869 (1151)
T 2eyq_A 797 ---DSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLV 869 (1151)
T ss_dssp ---CHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC---EEE
T ss_pred ---CHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCc---EEE
Confidence 0111222233333 35789999999999999999999877 89999999999999999999999988776 799
Q ss_pred ecccccccCCcccCCeeEEeCC-CCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 440 STRAGGLGLNLQTADTVIIFDS-DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 440 St~agg~GLNL~~ad~VI~~D~-~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
||.++++|||++++++||++++ .|++..+.|++||++|.|+.. .+|.++..+
T Consensus 870 aT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~~ 922 (1151)
T 2eyq_A 870 CTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHP 922 (1151)
T ss_dssp ESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECCG
T ss_pred ECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEEEECCc
Confidence 9999999999999999999999 589999999999999998654 445555543
No 35
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.95 E-value=5.4e-29 Score=284.06 Aligned_cols=311 Identities=15% Similarity=0.207 Sum_probs=107.7
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhh---cC
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTW---AP 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~---~p 129 (773)
..|+|+|.+++..++. ..+.+.|++.+||+|||++++..+...+........+|||+|. .|..||...+.++ ++
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 3789999999998874 1246789999999999999765555444333334479999999 7788887666554 46
Q ss_pred CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH---HhhcCeeEEEEccccccCC---hhhHHHHHHHc
Q 004103 130 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKN---HECALAKTISG 203 (773)
Q Consensus 130 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~---l~~~~~~~vIiDEaH~lkn---~~s~~~~~l~~ 203 (773)
...+.+..+...... ......+|+|+|++.+...... +....+++|||||||++.. ........+..
T Consensus 191 ~~~~~~~~~~~~~~~-------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~ 263 (479)
T 3fmp_B 191 ELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 263 (479)
T ss_dssp TCCEEEESTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTT
T ss_pred CceEEEEeCCccccc-------cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhh
Confidence 677766665432111 0114568999999999765422 2234688999999999853 12222333333
Q ss_pred c-ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhh
Q 004103 204 Y-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 282 (773)
Q Consensus 204 ~-~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~ 282 (773)
+ .....+++||||-. +++.+....
T Consensus 264 ~~~~~~~i~~SAT~~~----~~~~~~~~~--------------------------------------------------- 288 (479)
T 3fmp_B 264 LPRNCQMLLFSATFED----SVWKFAQKV--------------------------------------------------- 288 (479)
T ss_dssp SCTTSEEEEEESCCCH----HHHHHHHHH---------------------------------------------------
T ss_pred CCccceEEEEeCCCCH----HHHHHHHHH---------------------------------------------------
Confidence 3 34678999999842 121111110
Q ss_pred hhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHh
Q 004103 283 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIR 362 (773)
Q Consensus 283 k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~ 362 (773)
+|......+... . .. ...+ .+ .++.. -.
T Consensus 289 -------~~~~~~i~~~~~--~--~~----------------------~~~~----~~----~~~~~-----------~~ 316 (479)
T 3fmp_B 289 -------VPDPNVIKLKRE--E--ET----------------------LDTI----KQ----YYVLC-----------SS 316 (479)
T ss_dssp -------SSSEEEEEEC---------------------------------------------------------------
T ss_pred -------cCCCeEEecccc--c--cC----------------------cCCc----eE----EEEEe-----------CC
Confidence 111111111000 0 00 0000 00 00000 00
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
...|+..|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++..+ +||+|+
T Consensus 317 ~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~---iLv~T~ 391 (479)
T 3fmp_B 317 RDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK---VLVTTN 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCc---EEEEcc
Confidence 122444444544432 356899999999999999999999999999999999999999999999998766 799999
Q ss_pred cccccCCcccCCeeEEeCCCCCh------hhHHHHhhhhhhcCCcCeEE
Q 004103 443 AGGLGLNLQTADTVIIFDSDWNP------QMDQQAEDRAHRIGQKKEVR 485 (773)
Q Consensus 443 agg~GLNL~~ad~VI~~D~~wNp------~~~~Qa~gRa~RiGQ~k~V~ 485 (773)
++++|||++++++||+||+|+++ ..|.|++||++|.|+...+.
T Consensus 392 ~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i 440 (479)
T 3fmp_B 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV 440 (479)
T ss_dssp -------------------------------------------------
T ss_pred ccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEE
Confidence 99999999999999999999865 69999999999999655443
No 36
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.2e-26 Score=282.18 Aligned_cols=350 Identities=17% Similarity=0.125 Sum_probs=223.3
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCc
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSI 131 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~ 131 (773)
+.+|+|||.+++..+.. +.+.|++.+||+|||+++...+...+.. .+++||++|. .|..||..+|.++++
T Consensus 84 ~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 45799999999998874 7789999999999999987666555543 3589999998 888999999999987
Q ss_pred eEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCCh--hhHHHHHHHcc-cc
Q 004103 132 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTISGY-QI 206 (773)
Q Consensus 132 ~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~--~s~~~~~l~~~-~~ 206 (773)
.+.++.|..... ...+|+|+|++.+...... .....+++|||||+|++.+. ...+...+..+ ..
T Consensus 155 ~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 DVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp CEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred CEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 566677754321 4578999999998754322 12236899999999999765 33344444555 35
Q ss_pred ceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 004103 207 QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 286 (773)
Q Consensus 207 ~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv 286 (773)
.+.++||||+- | ..+ |..|+...... +..+- .
T Consensus 224 ~~il~LSATi~-n-~~e------------------~a~~l~~~~~~-----------------------~~~vi-----~ 255 (1010)
T 2xgj_A 224 VRYVFLSATIP-N-AME------------------FAEWICKIHSQ-----------------------PCHIV-----Y 255 (1010)
T ss_dssp CEEEEEECCCT-T-HHH------------------HHHHHHHHHTS-----------------------CEEEE-----E
T ss_pred CeEEEEcCCCC-C-HHH------------------HHHHHHhhcCC-----------------------CeEEE-----e
Confidence 67899999952 2 222 33333211000 00000 0
Q ss_pred hhcCCCceeEEEEe----------cC-CHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccch
Q 004103 287 EKYLPGKSQVILKC----------DM-SAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMW 355 (773)
Q Consensus 287 ~~~LP~k~e~~v~~----------~~-s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~ 355 (773)
...-|......+.. +. ......-|.......... ....|.-. .....+
T Consensus 256 ~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------------~~~~~~~~-~~~g~~ 314 (1010)
T 2xgj_A 256 TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ--------------------IGDDPNST-DSRGKK 314 (1010)
T ss_dssp ECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-------------------------------------
T ss_pred cCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh--------------------hccccccc-cccccc
Confidence 00011111111111 00 000000011110000000 00000000 000000
Q ss_pred hhHHHHhh-cc-hHHHHHHHHHHhhh-cCCcEEEEeecHHHHHHHHHHHHhCCCe-------------------------
Q 004103 356 RKEEIIRA-SG-KFELLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLNDFK------------------------- 407 (773)
Q Consensus 356 ~~~~l~~~-s~-K~~~L~~ll~~l~~-~g~kvLIFsq~~~~ld~L~~~L~~~g~~------------------------- 407 (773)
........ .+ ....+..++..+.. .+.++|||+.....++.+...|...++.
T Consensus 315 ~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 394 (1010)
T 2xgj_A 315 GQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRE 394 (1010)
T ss_dssp --------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTT
T ss_pred ccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhc
Confidence 00000000 00 02233444444443 3459999999999999999988765542
Q ss_pred --------------EEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEE----eCC----CCCh
Q 004103 408 --------------FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII----FDS----DWNP 465 (773)
Q Consensus 408 --------------~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~----~D~----~wNp 465 (773)
+..+||+++..+|..+++.|++|..+ +|++|.++++|||++.+++||. ||. +|+|
T Consensus 395 l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~ 471 (1010)
T 2xgj_A 395 LPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 471 (1010)
T ss_dssp CHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCH
T ss_pred chhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCH
Confidence 78899999999999999999998877 8999999999999999999999 999 9999
Q ss_pred hhHHHHhhhhhhcCCcCeEEEEEEEeCCC
Q 004103 466 QMDQQAEDRAHRIGQKKEVRVFVLVSVGS 494 (773)
Q Consensus 466 ~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~t 494 (773)
..|.|++||++|.|+.....++.|+.++.
T Consensus 472 ~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 472 GEYIQMSGRAGRRGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp HHHHHHHTTBCCTTTCSSEEEEEEECSCC
T ss_pred HHHhHhhhhcccCCCCCceEEEEEECCCC
Confidence 99999999999999998899999998663
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=9.1e-28 Score=285.91 Aligned_cols=307 Identities=17% Similarity=0.210 Sum_probs=211.2
Q ss_pred CCchHHHHHHHHHHHHhhcCC--CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC-
Q 004103 54 GELRAYQLEGLQWMLSLFNNN--LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP- 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~--~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p- 129 (773)
.+|+|+|.+++..+......+ .+.|++.+||+|||++++..+...+..+ ..+||++|+ .+..||..++.++++
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~Q~~~~l~~~~~~ 443 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAIQHYRRTVESFSK 443 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHhhh
Confidence 489999999999998765444 4789999999999999887776666542 478999999 788999999999986
Q ss_pred -CceEEEecCChhH--HHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHc-cc
Q 004103 130 -SIAAVVYDGRPDE--RKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-YQ 205 (773)
Q Consensus 130 -~~~v~~~~g~~~~--r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~-~~ 205 (773)
++.+.+++|.... +......+.. +.++|+|+|++.+... +...++++|||||+|++.... ...+.. ..
T Consensus 444 ~gi~v~~l~G~~~~~~r~~~~~~l~~--g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q---r~~l~~~~~ 515 (780)
T 1gm5_A 444 FNIHVALLIGATTPSEKEKIKSGLRN--GQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ---REALMNKGK 515 (780)
T ss_dssp SSCCEEECCSSSCHHHHHHHHHHHHS--SCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC--------CCCCSSSS
T ss_pred cCceEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH---HHHHHHhCC
Confidence 5788888886543 3233333322 5789999999887542 233467899999999983211 111211 24
Q ss_pred cceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhH
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 285 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~d 285 (773)
..+.++|||||+...+...+ ...+. ..
T Consensus 516 ~~~vL~mSATp~p~tl~~~~--~g~~~---------------------------------------------------~s 542 (780)
T 1gm5_A 516 MVDTLVMSATPIPRSMALAF--YGDLD---------------------------------------------------VT 542 (780)
T ss_dssp CCCEEEEESSCCCHHHHHHH--TCCSS---------------------------------------------------CE
T ss_pred CCCEEEEeCCCCHHHHHHHH--hCCcc---------------------------------------------------ee
Confidence 57789999999764332110 00000 00
Q ss_pred HhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcc
Q 004103 286 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 365 (773)
Q Consensus 286 v~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~ 365 (773)
+...+|+....+...-. ...
T Consensus 543 ~i~~~p~~r~~i~~~~~------------------------------------------------------------~~~ 562 (780)
T 1gm5_A 543 VIDEMPPGRKEVQTMLV------------------------------------------------------------PMD 562 (780)
T ss_dssp EECCCCSSCCCCEECCC------------------------------------------------------------CSS
T ss_pred eeeccCCCCcceEEEEe------------------------------------------------------------ccc
Confidence 01112221110000000 001
Q ss_pred hHHHHHHHHHHhhhcCCcEEEEeecH--------HHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCc
Q 004103 366 KFELLDRLLPKLRKSGHRVLLFSQMT--------RLMDILEIYLKL---NDFKFLRLDGSTKTEERGTLLKQFNAPDSPY 434 (773)
Q Consensus 366 K~~~L~~ll~~l~~~g~kvLIFsq~~--------~~ld~L~~~L~~---~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~ 434 (773)
+...+...+......+++++|||+.. ..++.+.+.|.. .++.+..+||+++.++|..+++.|+++..+
T Consensus 563 ~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~- 641 (780)
T 1gm5_A 563 RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD- 641 (780)
T ss_dssp THHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS-
T ss_pred hHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe-
Confidence 12223333444445678999999855 346677777876 478999999999999999999999998877
Q ss_pred EEEEEecccccccCCcccCCeeEEeCCCC-ChhhHHHHhhhhhhcCCcCeEEEE
Q 004103 435 FMFLLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKEVRVF 487 (773)
Q Consensus 435 ~v~LlSt~agg~GLNL~~ad~VI~~D~~w-Np~~~~Qa~gRa~RiGQ~k~V~V~ 487 (773)
+||+|.++++|||++++++||++|+++ +...+.|++||++|.|+...|.++
T Consensus 642 --ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 642 --ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp --BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred --EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 799999999999999999999999985 789999999999999977655443
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.2e-25 Score=273.07 Aligned_cols=363 Identities=17% Similarity=0.135 Sum_probs=220.0
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCc
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSI 131 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~ 131 (773)
..+|+|+|.+++..+. ++.+.|++.+||+|||++++..+...+.. .+.+||++|. .|..||..+|.+++.
T Consensus 182 ~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~PtraLa~Q~~~~l~~~~~-- 252 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG-- 252 (1108)
T ss_dssp SSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHTS--
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcHHHHHHHHHHHHHHhC--
Confidence 3589999999998875 67889999999999999987776666543 3579999999 888999999999987
Q ss_pred eEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChh--hHHHHHHHcc-cc
Q 004103 132 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGY-QI 206 (773)
Q Consensus 132 ~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~--s~~~~~l~~~-~~ 206 (773)
.+.++.|.... ....+|+|+|++.+...... ....++.+|||||||++.... ..+...+..+ ..
T Consensus 253 ~VglltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~ 321 (1108)
T 3l9o_A 253 DVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 321 (1108)
T ss_dssp SEEEECSSCBC-----------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTT
T ss_pred CccEEeCcccc-----------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCC
Confidence 45556665431 15689999999988764332 112257899999999997643 2333444444 35
Q ss_pred ceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 004103 207 QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 286 (773)
Q Consensus 207 ~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv 286 (773)
.+.++||||+ .|. .++...+..+... +..... . -.+|.-+... +
T Consensus 322 ~qvl~lSATi-pn~-~e~a~~l~~~~~~--------------~~~vi~----~-------------~~rp~pl~~~---~ 365 (1108)
T 3l9o_A 322 VRYVFLSATI-PNA-MEFAEWICKIHSQ--------------PCHIVY----T-------------NFRPTPLQHY---L 365 (1108)
T ss_dssp SEEEEEECSC-SSC-HHHHHHHHHHTCS--------------CEEEEE----E-------------CCCSSCEEEE---E
T ss_pred ceEEEEcCCC-CCH-HHHHHHHHhhcCC--------------CeEEEe----c-------------CCCcccceEE---E
Confidence 6789999994 332 2332222211100 000000 0 0000000000 0
Q ss_pred hhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcc-
Q 004103 287 EKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG- 365 (773)
Q Consensus 287 ~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~- 365 (773)
.. ........+.-.........|................... .+ +.. .........
T Consensus 366 ~~-~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~----------~~~----~~~~~~~~~~ 422 (1108)
T 3l9o_A 366 FP-AHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTD--------SR----------GKK----GQTYKGGSAK 422 (1108)
T ss_dssp EE-TTSSCCEEEEETTTEECHHHHHHHHTTC-------------------------------------------------
T ss_pred ee-cCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccc--------cc----------ccc----cccccccccc
Confidence 00 0000000000011111111111111100000000000000 00 000 000000000
Q ss_pred --hHHHHHHHHHHhhh-cCCcEEEEeecHHHHHHHHHHHHhCCCe-----------------------------------
Q 004103 366 --KFELLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLNDFK----------------------------------- 407 (773)
Q Consensus 366 --K~~~L~~ll~~l~~-~g~kvLIFsq~~~~ld~L~~~L~~~g~~----------------------------------- 407 (773)
....+..++..+.. .+.++||||.....++.+...|...++.
T Consensus 423 ~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~ 502 (1108)
T 3l9o_A 423 GDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPL 502 (1108)
T ss_dssp --CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHH
T ss_pred ccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHh
Confidence 13334445554443 3569999999999999999888643332
Q ss_pred ----EEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeCCCCChh--------hHHHHhhhh
Q 004103 408 ----FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQ--------MDQQAEDRA 475 (773)
Q Consensus 408 ----~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~--------~~~Qa~gRa 475 (773)
+..+||+++..+|..+++.|.+|..+ +|++|.++++|||++++++||.++.+|++. .|.|+.||+
T Consensus 503 l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRA 579 (1108)
T 3l9o_A 503 LRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRA 579 (1108)
T ss_dssp HHHTEEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHS
T ss_pred hhcCeeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhccc
Confidence 78899999999999999999998877 899999999999999999999888877665 499999999
Q ss_pred hhcCCcCeEEEEEEEeCCCHHH
Q 004103 476 HRIGQKKEVRVFVLVSVGSIEE 497 (773)
Q Consensus 476 ~RiGQ~k~V~V~rLi~~~tiEe 497 (773)
+|.|+.....+|.++.+...+.
T Consensus 580 GR~G~d~~G~~ill~~~~~~~~ 601 (1108)
T 3l9o_A 580 GRRGLDDRGIVIMMIDEKMEPQ 601 (1108)
T ss_dssp CCSSSCSSEEEEEEECCCCCHH
T ss_pred CCCCCCCceEEEEEecCCcCHH
Confidence 9999999999999998774333
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.93 E-value=9.3e-25 Score=261.29 Aligned_cols=327 Identities=17% Similarity=0.168 Sum_probs=215.4
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC-Cce
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SIA 132 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p-~~~ 132 (773)
+|+|+|.+++..++ ..+.+.|++.+||+|||+++...+....... .+++|+++|. .+..||..++.++.+ +..
T Consensus 30 ~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKGL---LEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTTT---TTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHHh---cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 79999999998632 3578899999999999999865554443322 3589999999 688999999976654 577
Q ss_pred EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHh--hcCeeEEEEccccccCC--hhhHHHHHHHccccce
Q 004103 133 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK--KVQWIYMIVDEGHRLKN--HECALAKTISGYQIQR 208 (773)
Q Consensus 133 v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~--~~~~~~vIiDEaH~lkn--~~s~~~~~l~~~~~~~ 208 (773)
+....|....... .....+|+|+|++.+......-. ..++++|||||+|.+.+ ....+...+..+...+
T Consensus 105 v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ 177 (715)
T 2va8_A 105 VAMTSGDYDTDDA-------WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRN 177 (715)
T ss_dssp EEECCSCSSSCCG-------GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSE
T ss_pred EEEEeCCCCCchh-------hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCc
Confidence 7777775432111 01367899999999876433211 23678999999999864 2333444455666788
Q ss_pred EEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHHhh
Q 004103 209 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEK 288 (773)
Q Consensus 209 rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~ 288 (773)
.++|||||- +..++ ..|++.+..... .+|+-+.... ...
T Consensus 178 ii~lSATl~--n~~~~------------------~~~l~~~~~~~~-------------------~r~~~l~~~~--~~~ 216 (715)
T 2va8_A 178 LLALSATIS--NYKQI------------------AKWLGAEPVATN-------------------WRPVPLIEGV--IYP 216 (715)
T ss_dssp EEEEESCCT--THHHH------------------HHHHTCEEEECC-------------------CCSSCEEEEE--EEE
T ss_pred EEEEcCCCC--CHHHH------------------HHHhCCCccCCC-------------------CCCCCceEEE--Eec
Confidence 999999973 23333 333332110000 0010000000 000
Q ss_pred cCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHH
Q 004103 289 YLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFE 368 (773)
Q Consensus 289 ~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~ 368 (773)
..+.......+.+.+ . .... ....+..
T Consensus 217 ~~~~~~~~~~~~~~~------------------------~---------------------~~~~--------~~~~~~~ 243 (715)
T 2va8_A 217 ERKKKEYNVIFKDNT------------------------T---------------------KKVH--------GDDAIIA 243 (715)
T ss_dssp CSSTTEEEEEETTSC------------------------E---------------------EEEE--------SSSHHHH
T ss_pred CCcccceeeecCcch------------------------h---------------------hhcc--------cchHHHH
Confidence 000000000000000 0 0000 0011223
Q ss_pred HHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCC------------------------------------CeEEEEc
Q 004103 369 LLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLND------------------------------------FKFLRLD 412 (773)
Q Consensus 369 ~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g------------------------------------~~~~~i~ 412 (773)
.+.++ ...++++|||+......+.+...|.... ..+..+|
T Consensus 244 ~~~~~----~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h 319 (715)
T 2va8_A 244 YTLDS----LSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHH 319 (715)
T ss_dssp HHHHH----HTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEEC
T ss_pred HHHHH----HhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEEC
Confidence 33333 3467899999999999999988887542 2488899
Q ss_pred CCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEE----eC-------CCCChhhHHHHhhhhhhcCCc
Q 004103 413 GSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII----FD-------SDWNPQMDQQAEDRAHRIGQK 481 (773)
Q Consensus 413 G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~----~D-------~~wNp~~~~Qa~gRa~RiGQ~ 481 (773)
|+++.++|..+.+.|.+|... +|++|.+++.|||++++++||. || .++++..+.|+.|||+|.|+.
T Consensus 320 ~~l~~~~r~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~ 396 (715)
T 2va8_A 320 AGLSKALRDLIEEGFRQRKIK---VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD 396 (715)
T ss_dssp TTSCHHHHHHHHHHHHTTCSC---EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTC
T ss_pred CCCCHHHHHHHHHHHHcCCCe---EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 999999999999999998776 7999999999999999999998 99 799999999999999999999
Q ss_pred CeEEEEEEEeCCC
Q 004103 482 KEVRVFVLVSVGS 494 (773)
Q Consensus 482 k~V~V~rLi~~~t 494 (773)
++..+|+|++...
T Consensus 397 ~~G~~~~l~~~~~ 409 (715)
T 2va8_A 397 QIGESIVVVRDKE 409 (715)
T ss_dssp SCEEEEEECSCGG
T ss_pred CCceEEEEeCCch
Confidence 9999999988764
No 40
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.93 E-value=1.2e-24 Score=266.73 Aligned_cols=371 Identities=16% Similarity=0.142 Sum_probs=228.6
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCc
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSI 131 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~ 131 (773)
+.+|+|+|.+++..+. ++.+.|++.+||+|||++++..+..+... .+.+||++|. .+..||..++.+++++.
T Consensus 37 ~f~l~~~Q~~aI~~il----~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~~~ 109 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLE----QGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFDDV 109 (997)
T ss_dssp SSCCCHHHHHHHHHHH----TTCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC--C
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 4689999999998877 57889999999999999876666555443 3478999998 88899999999999888
Q ss_pred eEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHH--hhcCeeEEEEccccccCCh--hhHHHHHHHccc-c
Q 004103 132 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL--KKVQWIYMIVDEGHRLKNH--ECALAKTISGYQ-I 206 (773)
Q Consensus 132 ~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l--~~~~~~~vIiDEaH~lkn~--~s~~~~~l~~~~-~ 206 (773)
.+..+.|.... ....+|+|+|++.+......- ...++.+|||||||++.+. ...+...+..++ .
T Consensus 110 ~v~~l~G~~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~ 178 (997)
T 4a4z_A 110 NIGLITGDVQI-----------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 178 (997)
T ss_dssp CEEEECSSCEE-----------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT
T ss_pred eEEEEeCCCcc-----------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccC
Confidence 88888886531 156789999999997654321 2236899999999998653 334455555554 5
Q ss_pred ceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 004103 207 QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 286 (773)
Q Consensus 207 ~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv 286 (773)
...++|||||- +..+ |..|+......... ++.
T Consensus 179 v~iIlLSAT~~--n~~e------------------f~~~l~~~~~~~~~----------------------vi~------ 210 (997)
T 4a4z_A 179 VKFILLSATVP--NTYE------------------FANWIGRTKQKNIY----------------------VIS------ 210 (997)
T ss_dssp CEEEEEECCCT--THHH------------------HHHHHHHHHTCCEE----------------------EEE------
T ss_pred CCEEEEcCCCC--ChHH------------------HHHHHhcccCCceE----------------------EEe------
Confidence 67799999973 2223 33333211000000 000
Q ss_pred hhcCCCceeEEEE--------e-cCCHHHHHHHHHHHHhcc---------------------ccc----ccC----CCcc
Q 004103 287 EKYLPGKSQVILK--------C-DMSAWQKVYYQQVTDVGR---------------------VGL----DTG----TGKS 328 (773)
Q Consensus 287 ~~~LP~k~e~~v~--------~-~~s~~q~~~Y~~i~~~~~---------------------~~~----~~~----~~~~ 328 (773)
....|...+..+. + .........|........ ... ..+ .+..
T Consensus 211 ~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~ 290 (997)
T 4a4z_A 211 TPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNS 290 (997)
T ss_dssp CSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---------------------------------------
T ss_pred cCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 0000000000000 0 000000000100000000 000 000 0000
Q ss_pred -chHHHHHHHHHHHhCCC-CcccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCC
Q 004103 329 -KSLQNLSMQLRKCCNHP-YLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDF 406 (773)
Q Consensus 329 -~~~~~~~~~Lrk~~~hP-~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~ 406 (773)
..... +..+..+ .........+ ........++..|...+.. ....++||||.....++.+...|...|+
T Consensus 291 ~~g~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~ 361 (997)
T 4a4z_A 291 TRGGAN-----RGGSRGAGAIGSNKRKFF--TQDGPSKKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINF 361 (997)
T ss_dssp ---------------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCC
T ss_pred cccccc-----cccccccccccccccccc--cccccchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCC
Confidence 00000 0000000 0000000000 0000122345555555544 2457999999999999999999977665
Q ss_pred ---------------------------------------eEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccccc
Q 004103 407 ---------------------------------------KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLG 447 (773)
Q Consensus 407 ---------------------------------------~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~G 447 (773)
.+..+||++++.+|..+++.|..+..+ +|++|.++++|
T Consensus 362 ~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~k---VLvAT~~~a~G 438 (997)
T 4a4z_A 362 CNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIK---VLFATETFAMG 438 (997)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCS---EEEECTHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCc---EEEEchHhhCC
Confidence 478999999999999999999998877 89999999999
Q ss_pred CCcccCCeeEEeCCCC---------ChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHH
Q 004103 448 LNLQTADTVIIFDSDW---------NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILER 502 (773)
Q Consensus 448 LNL~~ad~VI~~D~~w---------Np~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~ 502 (773)
||+++ .+||+++.+. ++..|.|+.|||+|.|+.....++.+...+..+..++..
T Consensus 439 IDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~ 501 (997)
T 4a4z_A 439 LNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKE 501 (997)
T ss_dssp CCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHH
T ss_pred CCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHH
Confidence 99999 7777766655 999999999999999999999999998776666665543
No 41
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.93 E-value=3.8e-25 Score=264.78 Aligned_cols=320 Identities=18% Similarity=0.180 Sum_probs=219.2
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHH-HHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC-Cc
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SI 131 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai-ali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p-~~ 131 (773)
+|+|+|.+++..++ ..+.+.|++.+||+|||+++. +++..+... .+++|+|+|. .++.||..++.++.+ ++
T Consensus 23 ~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raLa~q~~~~~~~l~~~g~ 96 (720)
T 2zj8_A 23 SFYPPQAEALKSGI---LEGKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKALAEEKFQEFQDWEKIGL 96 (720)
T ss_dssp BCCHHHHHHHTTTG---GGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGGHHHHHHHTGGGGGGTC
T ss_pred CCCHHHHHHHHHHh---cCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHHHHHHHHHHHHHHhcCC
Confidence 79999999997622 257889999999999999984 444444433 3589999998 888999999987654 67
Q ss_pred eEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHh--hcCeeEEEEccccccCC--hhhHHHHHHHccc-c
Q 004103 132 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK--KVQWIYMIVDEGHRLKN--HECALAKTISGYQ-I 206 (773)
Q Consensus 132 ~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~--~~~~~~vIiDEaH~lkn--~~s~~~~~l~~~~-~ 206 (773)
.+..+.|....... .....+|+|+|++.+......-. ..++++|||||+|++.. ....+...+..+. .
T Consensus 97 ~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~ 169 (720)
T 2zj8_A 97 RVAMATGDYDSKDE-------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGK 169 (720)
T ss_dssp CEEEECSCSSCCCG-------GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTT
T ss_pred EEEEecCCCCcccc-------ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcC
Confidence 88888885432111 01467999999999866433211 22678999999999864 2333334444443 5
Q ss_pred ceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 004103 207 QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 286 (773)
Q Consensus 207 ~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv 286 (773)
.+.++||||+- +..++ ..|+..+.-.. -.+
T Consensus 170 ~~ii~lSATl~--n~~~~------------------~~~l~~~~~~~-------------------~~r----------- 199 (720)
T 2zj8_A 170 AQIIGLSATIG--NPEEL------------------AEWLNAELIVS-------------------DWR----------- 199 (720)
T ss_dssp BEEEEEECCCS--CHHHH------------------HHHTTEEEEEC-------------------CCC-----------
T ss_pred CeEEEEcCCcC--CHHHH------------------HHHhCCcccCC-------------------CCC-----------
Confidence 78899999963 23333 33333211000 000
Q ss_pred hhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcch
Q 004103 287 EKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGK 366 (773)
Q Consensus 287 ~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K 366 (773)
|-.....+.... ....... .. . ....+
T Consensus 200 ----p~~l~~~~~~~~---------------~~~~~~~--~~----------------------~----------~~~~~ 226 (720)
T 2zj8_A 200 ----PVKLRRGVFYQG---------------FVTWEDG--SI----------------------D----------RFSSW 226 (720)
T ss_dssp ----SSEEEEEEEETT---------------EEEETTS--CE----------------------E----------ECSST
T ss_pred ----CCcceEEEEeCC---------------eeecccc--ch----------------------h----------hhhHH
Confidence 111111111000 0000000 00 0 01122
Q ss_pred HHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC------------------C---------------CeEEEEcC
Q 004103 367 FELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN------------------D---------------FKFLRLDG 413 (773)
Q Consensus 367 ~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~------------------g---------------~~~~~i~G 413 (773)
...+.+++ ..++++|||++.....+.+...|... + ..+..+||
T Consensus 227 ~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~ 302 (720)
T 2zj8_A 227 EELVYDAI----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHA 302 (720)
T ss_dssp THHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECT
T ss_pred HHHHHHHH----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecC
Confidence 23333333 45789999999999888888877642 1 24889999
Q ss_pred CCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEE----eC----CCCChhhHHHHhhhhhhcCCcCeEE
Q 004103 414 STKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII----FD----SDWNPQMDQQAEDRAHRIGQKKEVR 485 (773)
Q Consensus 414 ~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~----~D----~~wNp~~~~Qa~gRa~RiGQ~k~V~ 485 (773)
+++.++|..+.+.|.++..+ +|++|.+++.|||++++++||. || .|+++..+.|++|||+|.|+.+...
T Consensus 303 ~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~ 379 (720)
T 2zj8_A 303 GLGRDERVLVEENFRKGIIK---AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGE 379 (720)
T ss_dssp TSCHHHHHHHHHHHHTTSSC---EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEE
T ss_pred CCCHHHHHHHHHHHHCCCCe---EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCce
Confidence 99999999999999998776 7999999999999999999998 77 6899999999999999999999999
Q ss_pred EEEEEeCCCHHH
Q 004103 486 VFVLVSVGSIEE 497 (773)
Q Consensus 486 V~rLi~~~tiEe 497 (773)
+|.|++....+.
T Consensus 380 ~~~l~~~~~~~~ 391 (720)
T 2zj8_A 380 GIIVSTSDDPRE 391 (720)
T ss_dssp EEEECSSSCHHH
T ss_pred EEEEecCccHHH
Confidence 999999887554
No 42
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.93 E-value=2.2e-25 Score=266.12 Aligned_cols=320 Identities=19% Similarity=0.207 Sum_probs=217.0
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC-Cce
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SIA 132 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p-~~~ 132 (773)
+|+|+|.+++..+. .+.+.|++.+||+|||+++...+...+.. .+++|+++|. .++.||..++.++.+ +..
T Consensus 25 ~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 79999999998855 57889999999999999986555544432 4589999999 688999999976654 577
Q ss_pred EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHh--hcCeeEEEEccccccCC--hhhHHHHHHHcc----
Q 004103 133 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK--KVQWIYMIVDEGHRLKN--HECALAKTISGY---- 204 (773)
Q Consensus 133 v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~--~~~~~~vIiDEaH~lkn--~~s~~~~~l~~~---- 204 (773)
+..+.|....... .....+|+|+|++.+......-. ..++++|||||+|.+.. ....+...+..+
T Consensus 98 v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~ 170 (702)
T 2p6r_A 98 IGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN 170 (702)
T ss_dssp EEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcC
Confidence 8888775432110 11478999999999866432211 12578999999999865 233333333333
Q ss_pred ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhh
Q 004103 205 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 284 (773)
Q Consensus 205 ~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~ 284 (773)
+..+.++||||+- +..++ ..|++.+.-... .+
T Consensus 171 ~~~~ii~lSATl~--n~~~~------------------~~~l~~~~~~~~-------------------~r--------- 202 (702)
T 2p6r_A 171 KALRVIGLSATAP--NVTEI------------------AEWLDADYYVSD-------------------WR--------- 202 (702)
T ss_dssp TTCEEEEEECCCT--THHHH------------------HHHTTCEEEECC-------------------CC---------
T ss_pred cCceEEEECCCcC--CHHHH------------------HHHhCCCcccCC-------------------CC---------
Confidence 3577899999963 23433 333322110000 00
Q ss_pred HHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhc
Q 004103 285 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 364 (773)
Q Consensus 285 dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s 364 (773)
|-.....+.... ........ .. .. ..-
T Consensus 203 ------~~~l~~~~~~~~---------------~~~~~~~~--~~---------------------~~---------~~~ 229 (702)
T 2p6r_A 203 ------PVPLVEGVLCEG---------------TLELFDGA--FS---------------------TS---------RRV 229 (702)
T ss_dssp ------SSCEEEEEECSS---------------EEEEEETT--EE---------------------EE---------EEC
T ss_pred ------CccceEEEeeCC---------------eeeccCcc--hh---------------------hh---------hhh
Confidence 101111110000 00000000 00 00 000
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC------------------------------CCeEEEEcCC
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN------------------------------DFKFLRLDGS 414 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~------------------------------g~~~~~i~G~ 414 (773)
.+...+.+. ...++++|||++.....+.+...|... +..+..+||+
T Consensus 230 ~~~~~~~~~----~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 230 KFEELVEEC----VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp CHHHHHHHH----HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hHHHHHHHH----HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 022223332 346789999999998888888777542 1346779999
Q ss_pred CCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEE----eC---CCCChhhHHHHhhhhhhcCCcCeEEEE
Q 004103 415 TKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII----FD---SDWNPQMDQQAEDRAHRIGQKKEVRVF 487 (773)
Q Consensus 415 ~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~----~D---~~wNp~~~~Qa~gRa~RiGQ~k~V~V~ 487 (773)
++.++|..+.+.|.+|... +|++|.+++.|||++++++||. || .++++..+.|+.|||+|.|+.++..+|
T Consensus 306 l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 382 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAI 382 (702)
T ss_dssp SCHHHHHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEE
T ss_pred CCHHHHHHHHHHHHCCCCe---EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEE
Confidence 9999999999999998776 7999999999999999999998 77 689999999999999999999999999
Q ss_pred EEEeCCCHH
Q 004103 488 VLVSVGSIE 496 (773)
Q Consensus 488 rLi~~~tiE 496 (773)
.|++....+
T Consensus 383 ~l~~~~~~~ 391 (702)
T 2p6r_A 383 IIVGKRDRE 391 (702)
T ss_dssp EECCGGGHH
T ss_pred EEecCccHH
Confidence 999887644
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.93 E-value=3.2e-24 Score=265.10 Aligned_cols=320 Identities=17% Similarity=0.216 Sum_probs=223.9
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc-CC
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA-PS 130 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~-p~ 130 (773)
+.+|+|+|.+++..++ ++.+.|+..+||+|||+.++..+.... ...+.+|||+|+ .|+.|+...+.++. .+
T Consensus 76 gf~pt~iQ~~ai~~il----~g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp SSCCCHHHHHHHHHHT----TTCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 3479999999999887 477899999999999997766666555 234579999999 88899999999976 45
Q ss_pred ceEEEecCChhH--HHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChh-------------h
Q 004103 131 IAAVVYDGRPDE--RKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHE-------------C 195 (773)
Q Consensus 131 ~~v~~~~g~~~~--r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~-------------s 195 (773)
+.+..+.|.... +......+.. +.++|+|+|++.+......+...++++|||||||++.... .
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~--g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~ 226 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEE--DDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPE 226 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHT--SCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhC--CCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCH
Confidence 688888876543 2222222222 4689999999999887777777789999999999864311 1
Q ss_pred H-HHHHHHcc------------ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHH
Q 004103 196 A-LAKTISGY------------QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEE 262 (773)
Q Consensus 196 ~-~~~~l~~~------------~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~ 262 (773)
. +..++..+ .....+++||||....+.+.+ +.....
T Consensus 227 ~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~----------------~~~~l~--------------- 275 (1104)
T 4ddu_A 227 EIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLN--------------- 275 (1104)
T ss_dssp HHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH----------------HHHHTC---------------
T ss_pred HHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH----------------hhccee---------------
Confidence 1 23333333 345779999997655433210 000000
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHh
Q 004103 263 QLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCC 342 (773)
Q Consensus 263 ~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~ 342 (773)
+.+.. .....+......+.
T Consensus 276 --------------i~v~~----~~~~~~~i~~~~~~------------------------------------------- 294 (1104)
T 4ddu_A 276 --------------FTVGR----LVSVARNITHVRIS------------------------------------------- 294 (1104)
T ss_dssp --------------CCCCB----CCCCCCCEEEEEES-------------------------------------------
T ss_pred --------------EEecc----CCCCcCCceeEEEe-------------------------------------------
Confidence 00000 00000111111111
Q ss_pred CCCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEE-EEcCCCCHHHHH
Q 004103 343 NHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFL-RLDGSTKTEERG 421 (773)
Q Consensus 343 ~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~-~i~G~~~~~eR~ 421 (773)
..|...|..++.. .+.++||||+....++.+..+|...|+++. .+|| +|.
T Consensus 295 ---------------------~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr 345 (1104)
T 4ddu_A 295 ---------------------SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEK 345 (1104)
T ss_dssp ---------------------CCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHH
T ss_pred ---------------------cCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHH
Confidence 1234445555555 257999999999999999999999999998 9999 355
Q ss_pred HHHHhhcCCCCCcEEEEEe----cccccccCCccc-CCeeEEeCCCC---------------------------------
Q 004103 422 TLLKQFNAPDSPYFMFLLS----TRAGGLGLNLQT-ADTVIIFDSDW--------------------------------- 463 (773)
Q Consensus 422 ~~i~~Fn~~~~~~~v~LlS----t~agg~GLNL~~-ad~VI~~D~~w--------------------------------- 463 (773)
+ ++.|++|..+ +||+ |+++++|||+++ +++||+||+|-
T Consensus 346 ~-l~~F~~G~~~---VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~ 421 (1104)
T 4ddu_A 346 N-FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDV 421 (1104)
T ss_dssp H-HHHHHHTSCS---EEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHH
T ss_pred H-HHHHHCCCCC---EEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 9999998877 7888 999999999999 99999999998
Q ss_pred ---------------------------------------ChhhHHHHhhhhhhcCCcCe--EEEEEEEeCCCHHHHHHHH
Q 004103 464 ---------------------------------------NPQMDQQAEDRAHRIGQKKE--VRVFVLVSVGSIEEVILER 502 (773)
Q Consensus 464 ---------------------------------------Np~~~~Qa~gRa~RiGQ~k~--V~V~rLi~~~tiEe~i~~~ 502 (773)
++..|+||.||++|.|...- ...+.++ -|+.++..
T Consensus 422 ~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~----~d~~~~~~ 497 (1104)
T 4ddu_A 422 EELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE----EDEEIFES 497 (1104)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC----CCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE----ecHHHHHH
Confidence 67789999999999876432 2222233 26778888
Q ss_pred HHHHHhHH
Q 004103 503 AKQKMGID 510 (773)
Q Consensus 503 ~~~K~~l~ 510 (773)
+.+++...
T Consensus 498 l~~~~~~~ 505 (1104)
T 4ddu_A 498 LKTRLLLI 505 (1104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 88777643
No 44
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.91 E-value=2.1e-23 Score=254.52 Aligned_cols=348 Identities=16% Similarity=0.169 Sum_probs=208.1
Q ss_pred CCchHHHHHHHHHHHHhhc----------CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLFN----------NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWIN 122 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~----------~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~ 122 (773)
..|||||.+|+.+++.... .+.+|++.+.||+|||++++.++ .++...+...++|||||. .|..||..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 3699999999999987542 23678999999999999997666 444333334589999996 89999999
Q ss_pred HHHhhcCCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHH----hhcCeeEEEEccccccCChhhHHH
Q 004103 123 EFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL----KKVQWIYMIVDEGHRLKNHECALA 198 (773)
Q Consensus 123 E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l----~~~~~~~vIiDEaH~lkn~~s~~~ 198 (773)
+|.+|.+.. +..+.. ...+...+.. ...+|+|+||+.+....... ....+.+||||||||+.. ....
T Consensus 349 ~f~~f~~~~---v~~~~s--~~~l~~~L~~--~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--~~~~ 419 (1038)
T 2w00_A 349 EYQRFSPDS---VNGSEN--TAGLKRNLDK--DDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--GEAQ 419 (1038)
T ss_dssp HHHTTSTTC---SSSSCC--CHHHHHHHHC--SSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--HHHH
T ss_pred HHHHhcccc---cccccC--HHHHHHHhcC--CCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--hHHH
Confidence 999998652 122211 1122222211 46789999999998754321 122689999999999753 2233
Q ss_pred HHH-HccccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhh
Q 004103 199 KTI-SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 277 (773)
Q Consensus 199 ~~l-~~~~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~ 277 (773)
+.+ ..++...+++|||||....-.. +. ..-...|+.++... +-.+ .+. ...+
T Consensus 420 ~~I~~~~p~a~~lgfTATP~~~~~~~-------------~~-~~t~~~FG~~i~~Y-----~l~~---AI~--dg~l--- 472 (1038)
T 2w00_A 420 KNLKKKFKRYYQFGFTGTPIFPENAL-------------GS-ETTASVFGRELHSY-----VITD---AIR--DEKV--- 472 (1038)
T ss_dssp HHHHHHCSSEEEEEEESSCCCSTTCT-------------TS-CCHHHHHCSEEEEE-----CHHH---HHH--HTSS---
T ss_pred HHHHHhCCcccEEEEeCCccccccch-------------hh-hHHHHHhCCeeEee-----cHHH---HHh--CCCc---
Confidence 334 6677789999999998542100 00 00111222211110 0000 000 0011
Q ss_pred hhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhh
Q 004103 278 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK 357 (773)
Q Consensus 278 ~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~ 357 (773)
+|.. +.+....+. +..+. . . .. . .....+. +-.++
T Consensus 473 ------------~p~~---v~y~~v~~~----~~~~~-~-----e----~d--~----~~~~~i~-~~~~l--------- 507 (1038)
T 2w00_A 473 ------------LKFK---VDYNDVRPQ----FKSLE-T-----E----TD--E----KKLSAAE-NQQAF--------- 507 (1038)
T ss_dssp ------------CCEE---EEECCCCGG----GHHHH-T-----C----CC--H----HHHHHTC-STTTT---------
T ss_pred ------------CCeE---EEEEeccch----hhhcc-c-----c----cc--H----HHHHHHH-HHHHh---------
Confidence 1211 111111110 00000 0 0 00 0 0000000 00000
Q ss_pred HHHHhhcchHHHH-HHHHHHhhh---------cCCcEEEEeecHHHHHHHHHHHHhCC------------CeE-EEEcCC
Q 004103 358 EEIIRASGKFELL-DRLLPKLRK---------SGHRVLLFSQMTRLMDILEIYLKLND------------FKF-LRLDGS 414 (773)
Q Consensus 358 ~~l~~~s~K~~~L-~~ll~~l~~---------~g~kvLIFsq~~~~ld~L~~~L~~~g------------~~~-~~i~G~ 414 (773)
....++..+ ..++..+.. .+.++||||..+..+..+...|...+ +++ +.++|+
T Consensus 508 ----~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~ 583 (1038)
T 2w00_A 508 ----LHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFA 583 (1038)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCC
T ss_pred ----cCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCC
Confidence 011122222 223333221 35689999999999999988886543 455 455553
Q ss_pred ----------C----------CH-----------------------------HHHHHHHHhhcCCCCCcEEEEEeccccc
Q 004103 415 ----------T----------KT-----------------------------EERGTLLKQFNAPDSPYFMFLLSTRAGG 445 (773)
Q Consensus 415 ----------~----------~~-----------------------------~eR~~~i~~Fn~~~~~~~v~LlSt~agg 445 (773)
+ +. .+|..++++|.++..+ +||+++.+.
T Consensus 584 ~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~---ILIvvd~ll 660 (1038)
T 2w00_A 584 ANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID---LLIVVGMFL 660 (1038)
T ss_dssp C------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS---EEEESSTTS
T ss_pred CccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe---EEEEcchHH
Confidence 1 11 1488899999998876 799999999
Q ss_pred ccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCc-Ce-EEEEEEEe
Q 004103 446 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQK-KE-VRVFVLVS 491 (773)
Q Consensus 446 ~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~-k~-V~V~rLi~ 491 (773)
+|+|.+.+ +|+++|.|-+++.++||+||+.|.+.. |+ ..|+.|+.
T Consensus 661 tGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 661 TGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred hCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999999 678899999999999999999999874 44 77777764
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.89 E-value=6.7e-23 Score=253.29 Aligned_cols=316 Identities=14% Similarity=0.158 Sum_probs=208.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCC--
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS-- 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~-- 130 (773)
..| |+|.+++..++ .+.+.|+..+||+|||+.++.++..+.. ..+.+|||+|+ .|+.|+...+.++++.
T Consensus 56 ~~p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~~l~~l~~~~~ 127 (1054)
T 1gku_B 56 EPR-AIQKMWAKRIL----RKESFAATAPTGVGKTSFGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYAEKAG 127 (1054)
T ss_dssp SCC-HHHHHHHHHHH----TTCCEECCCCBTSCSHHHHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCH-HHHHHHHHHHH----hCCCEEEEcCCCCCHHHHHHHHHHHHhh---cCCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 348 99999999888 5788999999999999855555555443 24579999999 8889999999988753
Q ss_pred c----eEEEecCChhHHHH--HHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc
Q 004103 131 I----AAVVYDGRPDERKA--MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY 204 (773)
Q Consensus 131 ~----~v~~~~g~~~~r~~--~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~ 204 (773)
+ .+..+.|....... ....+ ..++|+|+|++.+......|. .+++|||||||++.+....+...+..+
T Consensus 128 i~~~~~v~~~~Gg~~~~~~~~~~~~l----~~~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~~~l 201 (1054)
T 1gku_B 128 VGTENLIGYYHGRIPKREKENFMQNL----RNFKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLLHLL 201 (1054)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSG----GGCSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHHHHT
T ss_pred CCccceEEEEeCCCChhhHHHHHhhc----cCCCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHHHHh
Confidence 3 67777775543322 11111 228999999999987544433 688999999999877555555554443
Q ss_pred ------------ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHh
Q 004103 205 ------------QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHH 272 (773)
Q Consensus 205 ------------~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~ 272 (773)
.....+++|||+... .++. ..+...
T Consensus 202 gf~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~--------------~~~~~~--------------------------- 238 (1054)
T 1gku_B 202 GFHYDLKTKSWVGEARGCLMVSTATAK--KGKK--------------AELFRQ--------------------------- 238 (1054)
T ss_dssp TEEEETTTTEEEECCSSEEEECCCCSC--CCTT--------------HHHHHH---------------------------
T ss_pred CcchhhhhhhcccCCceEEEEecCCCc--hhHH--------------HHHhhc---------------------------
Confidence 123458888886433 1100 000000
Q ss_pred hhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccc
Q 004103 273 VIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY 352 (773)
Q Consensus 273 ~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~ 352 (773)
.+. +.+.. ....++.... ..+
T Consensus 239 ~~~-i~v~~-----~~~~~~~i~~-~~~---------------------------------------------------- 259 (1054)
T 1gku_B 239 LLN-FDIGS-----SRITVRNVED-VAV---------------------------------------------------- 259 (1054)
T ss_dssp HHC-CCCSC-----CEECCCCEEE-EEE----------------------------------------------------
T ss_pred ceE-EEccC-----cccCcCCceE-EEe----------------------------------------------------
Confidence 000 00000 0000000000 000
Q ss_pred cchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCC
Q 004103 353 NMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 432 (773)
Q Consensus 353 ~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~ 432 (773)
...|...|..++... +.++||||+....++.+..+|... +++..+||++. .++++|++|..
T Consensus 260 ----------~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~ 320 (1054)
T 1gku_B 260 ----------NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEI 320 (1054)
T ss_dssp ----------SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSC
T ss_pred ----------chhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCC
Confidence 012333444555443 678999999999999999999988 99999999873 78899999887
Q ss_pred CcEEEEEe----cccccccCCcccC-CeeEEeCCC---------------------------------------------
Q 004103 433 PYFMFLLS----TRAGGLGLNLQTA-DTVIIFDSD--------------------------------------------- 462 (773)
Q Consensus 433 ~~~v~LlS----t~agg~GLNL~~a-d~VI~~D~~--------------------------------------------- 462 (773)
+ +||+ |+++++|||++.+ ++||+||.|
T Consensus 321 ~---VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1054)
T 1gku_B 321 D---HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVR 397 (1054)
T ss_dssp S---EEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHH
T ss_pred c---EEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 6 6777 9999999999995 999999999
Q ss_pred --------------------------CChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHHHHhH
Q 004103 463 --------------------------WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGI 509 (773)
Q Consensus 463 --------------------------wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~K~~l 509 (773)
.++..|+||+||++|.|.......+.++..+ |..++..+.++++.
T Consensus 398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~--d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 398 EILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED--DSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS--CHHHHHHHHHHHHT
T ss_pred HHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec--CHHHHHHHHHHHhh
Confidence 7899999999999998877432333334444 45566666666544
No 46
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.85 E-value=5.1e-21 Score=215.15 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=85.9
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCe-----
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADT----- 455 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~----- 455 (773)
+.++||||+....++.+...|...|+++..+||. +|.++++.|.++..+ +|++|.++++|||++ +++
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~g 242 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDPR 242 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEECC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEecC
Confidence 5689999999999999999999999999999997 688899999998877 899999999999999 555
Q ss_pred ------------eEEeCCCCChhhHHHHhhhhhhcCCcCe
Q 004103 456 ------------VIIFDSDWNPQMDQQAEDRAHRIGQKKE 483 (773)
Q Consensus 456 ------------VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~ 483 (773)
||+++.|.++..+.|+.||++|.|....
T Consensus 243 ~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~ 282 (431)
T 2v6i_A 243 KTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLG 282 (431)
T ss_dssp EEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred ccccceecccceeecccccCCHHHHHHhhhccCCCCCCCC
Confidence 5778999999999999999999996544
No 47
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.84 E-value=6e-20 Score=215.29 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=102.2
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 443 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a 443 (773)
..|+.+|.+.+......+.++||||......+.|...|...|+++..++|.....+|..+...|+.+ . ++|+|+.
T Consensus 415 ~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~---VlIATdm 489 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--A---VTIATNM 489 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--C---EEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--e---EEEeCCc
Confidence 3588888888887767788999999999999999999999999999999999888877665666554 2 7999999
Q ss_pred ccccCCcc--------cCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeE
Q 004103 444 GGLGLNLQ--------TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 484 (773)
Q Consensus 444 gg~GLNL~--------~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V 484 (773)
+|+|+|++ +..+||+||.|-++..|.|++||++|.|..-..
T Consensus 490 AgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 490 AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred cccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 99999999 678999999999999999999999999976544
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.83 E-value=2.7e-21 Score=227.48 Aligned_cols=120 Identities=15% Similarity=0.186 Sum_probs=96.7
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEE-
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII- 458 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~- 458 (773)
.+.++||||+....++.+...|...|+++..+|| ++|..+++.|.++..+ +|++|+++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEEC
Confidence 4779999999999999999999999999999999 3899999999998877 899999999999999 999997
Q ss_pred -------------------eCCCCChhhHHHHhhhhhhcC-CcCeEEEEEEEe-CCCHHHHHHHHHHHHHhH
Q 004103 459 -------------------FDSDWNPQMDQQAEDRAHRIG-QKKEVRVFVLVS-VGSIEEVILERAKQKMGI 509 (773)
Q Consensus 459 -------------------~D~~wNp~~~~Qa~gRa~RiG-Q~k~V~V~rLi~-~~tiEe~i~~~~~~K~~l 509 (773)
||.|.++..+.|++||++|.| +...+ |.|+. ...-|..++..++.+..+
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~a--i~l~~~~~~~d~~~l~~ie~~~~l 550 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDE--YHYGGGTSEDDTMLAHWTEAKILL 550 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEE--EEECSCCCCCCTTBHHHHHHHHHH
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEE--EEEEecCChhHHHHHHHHHHHHhh
Confidence 668889999999999999994 44333 33432 122244444445454433
No 49
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.83 E-value=1.9e-20 Score=211.76 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=86.5
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEe
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIF 459 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~ 459 (773)
.+.++||||+....++.+...|...|+.+..+||.+. ..+++.|+++... +|++|+++++|||++. ++||+|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEEC
Confidence 3569999999999999999999999999999999654 5789999998877 8999999999999999 999999
Q ss_pred C--------------------CCCChhhHHHHhhhhhhcCCc
Q 004103 460 D--------------------SDWNPQMDQQAEDRAHRIGQK 481 (773)
Q Consensus 460 D--------------------~~wNp~~~~Qa~gRa~RiGQ~ 481 (773)
| .|.++..+.|++||++|.|..
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~ 300 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 300 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC
Confidence 8 889999999999999999973
No 50
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.83 E-value=8.4e-21 Score=213.87 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=78.7
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEE-
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII- 458 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~- 458 (773)
.+.++||||+....++.+...|...|+++..+|| ++|.++++.|+++..+ +|++|+++++|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEeC
Confidence 4779999999999999999999999999999999 4788999999998877 899999999999999 999986
Q ss_pred ------------------eCCCCChhhHHHHhhhhhhcCC
Q 004103 459 ------------------FDSDWNPQMDQQAEDRAHRIGQ 480 (773)
Q Consensus 459 ------------------~D~~wNp~~~~Qa~gRa~RiGQ 480 (773)
++.|.++..+.|+.||++|.|.
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 8999999999999999999853
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.83 E-value=2.4e-20 Score=211.41 Aligned_cols=104 Identities=15% Similarity=0.165 Sum_probs=89.3
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEE--
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII-- 458 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~-- 458 (773)
+.++||||+....++.+...|...|+.+..++|. +|..+++.|.++... +|++|+++++|||++. ++||.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~G 261 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDCR 261 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEECC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEECC
Confidence 6799999999999999999999999999999994 788899999998776 7999999999999999 99998
Q ss_pred ------------------eCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 459 ------------------FDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 459 ------------------~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
||.|.++..+.|++||++|.|.. +-..|.|++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 262 KSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp EECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred cccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 78999999999999999999963 23445666664
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.82 E-value=7.1e-19 Score=224.98 Aligned_cols=322 Identities=16% Similarity=0.136 Sum_probs=199.5
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc-C--
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA-P-- 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~-p-- 129 (773)
..+.|.|.+++..++ +.+.+.+++.+||+|||+++...+...+.. ...+.+|+|+|. +++.|-..++.+.+ +
T Consensus 925 ~~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~-~~~~kavyi~P~raLa~q~~~~~~~~f~~~~ 1000 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQ-SSEGRCVYITPMEALAEQVYMDWYEKFQDRL 1000 (1724)
T ss_dssp SBCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHH-CTTCCEEEECSCHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHh-CCCCEEEEEcChHHHHHHHHHHHHHHhchhc
Confidence 368899999998665 467789999999999999986555444443 234589999999 77777666765433 2
Q ss_pred CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHh----hcCeeEEEEccccccCChhhHHH-HHHHcc
Q 004103 130 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKNHECALA-KTISGY 204 (773)
Q Consensus 130 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~----~~~~~~vIiDEaH~lkn~~s~~~-~~l~~~ 204 (773)
+.++..+.|......... .+.+|+|+|++.+........ -.+..+|||||+|.+........ ..+..+
T Consensus 1001 g~~V~~ltGd~~~~~~~~-------~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl 1073 (1724)
T 4f92_B 1001 NKKVVLLTGETSTDLKLL-------GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRM 1073 (1724)
T ss_dssp CCCEEECCSCHHHHHHHH-------HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHH
T ss_pred CCEEEEEECCCCcchhhc-------CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHH
Confidence 577888888765432221 356899999998743221111 12467999999999965433222 222222
Q ss_pred --------ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhh
Q 004103 205 --------QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 276 (773)
Q Consensus 205 --------~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p 276 (773)
...+.++||||- ++..+|.+|++.........
T Consensus 1074 ~~i~~~~~~~~riI~lSATl--------------------~N~~dla~WL~~~~~~~~~~-------------------- 1113 (1724)
T 4f92_B 1074 RYISSQIERPIRIVALSSSL--------------------SNAKDVAHWLGCSATSTFNF-------------------- 1113 (1724)
T ss_dssp HHHHHTTSSCCEEEEEESCB--------------------TTHHHHHHHHTCCSTTEEEC--------------------
T ss_pred HHHHhhcCCCceEEEEeCCC--------------------CCHHHHHHHhCCCCCCeEEe--------------------
Confidence 245679999993 23344455554321100000
Q ss_pred hhhhhhhhHHhhcCCCce-eEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccch
Q 004103 277 FILRRKKDEVEKYLPGKS-QVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMW 355 (773)
Q Consensus 277 ~~lRR~k~dv~~~LP~k~-e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~ 355 (773)
.. ..-|-.. ..+...+.......+.
T Consensus 1114 ------~~---~~RPvpL~~~i~~~~~~~~~~~~~--------------------------------------------- 1139 (1724)
T 4f92_B 1114 ------HP---NVRPVPLELHIQGFNISHTQTRLL--------------------------------------------- 1139 (1724)
T ss_dssp ------CG---GGCSSCEEEEEEEECCCSHHHHHH---------------------------------------------
T ss_pred ------CC---CCCCCCeEEEEEeccCCCchhhhh---------------------------------------------
Confidence 00 0012111 1222222111100000
Q ss_pred hhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHh--------------------------------
Q 004103 356 RKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL-------------------------------- 403 (773)
Q Consensus 356 ~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~-------------------------------- 403 (773)
.....+...+.. ...++++||||..+...+.++..|..
T Consensus 1140 ---------~~~~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~ 1209 (1724)
T 4f92_B 1140 ---------SMAKPVYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK 1209 (1724)
T ss_dssp ---------TTHHHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHH
T ss_pred ---------hhcchHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHH
Confidence 000001111111 23456788888777655444333211
Q ss_pred --CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEE----eC------CCCChhhHHHH
Q 004103 404 --NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII----FD------SDWNPQMDQQA 471 (773)
Q Consensus 404 --~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~----~D------~~wNp~~~~Qa 471 (773)
....+..+||+++..+|..+.+.|.+|... +|++|.+++.|||+++..+||. || .+.++..+.|+
T Consensus 1210 ~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~---VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm 1286 (1724)
T 4f92_B 1210 ETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ---VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQM 1286 (1724)
T ss_dssp HHHHTTEEEECTTSCHHHHHHHHHHHHHTSBC---EEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHH
T ss_pred HHHhCCEEEECCCCCHHHHHHHHHHHHCCCCe---EEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHh
Confidence 022477899999999999999999998877 7999999999999997666652 32 24678999999
Q ss_pred hhhhhhcCCcCeEEEEEEEeCC
Q 004103 472 EDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 472 ~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
+|||+|.|....-.++.++...
T Consensus 1287 ~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1287 VGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp HTTBCCTTTCSCEEEEEEEEGG
T ss_pred hccccCCCCCCceEEEEEecch
Confidence 9999999998887777777654
No 53
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.81 E-value=7e-19 Score=205.71 Aligned_cols=118 Identities=15% Similarity=0.159 Sum_probs=105.2
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 443 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a 443 (773)
..|+.+|.+.+......+.+|||||......+.|...|...|+++..++|.....+|..+.+.|+.+. ++|+|+.
T Consensus 424 ~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G~-----VtIATnm 498 (853)
T 2fsf_A 424 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAA-----VTIATNM 498 (853)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTTC-----EEEEESC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCCe-----EEEeccc
Confidence 45889999999887778899999999999999999999999999999999998888877888888763 8999999
Q ss_pred ccccCCcccC-------------------------------------CeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEE
Q 004103 444 GGLGLNLQTA-------------------------------------DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRV 486 (773)
Q Consensus 444 gg~GLNL~~a-------------------------------------d~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V 486 (773)
+|+|+|+... .+||.+|.|-++..|.|++||++|.|..-....
T Consensus 499 AgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~ 578 (853)
T 2fsf_A 499 AGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRF 578 (853)
T ss_dssp CSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEE
T ss_pred ccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEE
Confidence 9999999863 599999999999999999999999997655433
No 54
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.80 E-value=1.1e-19 Score=212.45 Aligned_cols=285 Identities=15% Similarity=0.143 Sum_probs=182.9
Q ss_pred HhhcCCCCeEEecCCCCCHHHHH-HHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCChhHHHHH
Q 004103 69 SLFNNNLNGILADEMGLGKTIQT-IALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAM 146 (773)
Q Consensus 69 ~~~~~~~~gILademGlGKTi~a-iali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~ 146 (773)
....++.+.|++.+||+|||++. +.++..+... ...+||++|+ .|..|+.+++.. ..+. |.+....
T Consensus 181 ~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~---~~~vLvl~PtreLa~Qi~~~l~~----~~v~-~~~~~l~---- 248 (618)
T 2whx_A 181 DIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR---RLRTLILAPTRVVAAEMEEALRG----LPIR-YQTPAVK---- 248 (618)
T ss_dssp GGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTTT----SCEE-ECCTTSS----
T ss_pred HHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC---CCeEEEEcChHHHHHHHHHHhcC----Ccee-Eecccce----
Confidence 34457888999999999999985 5566555542 3479999999 777888877753 2222 3332210
Q ss_pred HHHHHhhcCCccEEEcCHHHHHHhHHH-HhhcCeeEEEEccccccCChhh--HHHHHHHcc--ccceEEEecCCCCCCCH
Q 004103 147 REEFFSERGRFNVLITHYDLIMRDRQY-LKKVQWIYMIVDEGHRLKNHEC--ALAKTISGY--QIQRRLLLTGTPIQNSL 221 (773)
Q Consensus 147 ~~~~~~~~~~~~VvItTye~l~~~~~~-l~~~~~~~vIiDEaH~lkn~~s--~~~~~l~~~--~~~~rllLTgTP~~n~~ 221 (773)
........+.+++.+.+...... ....++++|||||||++ +... .+...+..+ .....+++||||-....
T Consensus 249 ----~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~ 323 (618)
T 2whx_A 249 ----SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD 323 (618)
T ss_dssp ----CCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCC
T ss_pred ----eccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhh
Confidence 00113345667788776553221 11246899999999998 3222 222222333 35678999999843210
Q ss_pred HHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEec
Q 004103 222 QELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCD 301 (773)
Q Consensus 222 ~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~ 301 (773)
.|.. .-|.. ..+...
T Consensus 324 -------~~~~--------------------------------------------------------~~~~~--~~v~~~ 338 (618)
T 2whx_A 324 -------PFPQ--------------------------------------------------------SNSPI--EDIERE 338 (618)
T ss_dssp -------SSCC--------------------------------------------------------CSSCE--EEEECC
T ss_pred -------hhhc--------------------------------------------------------cCCce--eeeccc
Confidence 0000 00000 000000
Q ss_pred CCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhcC
Q 004103 302 MSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSG 381 (773)
Q Consensus 302 ~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g 381 (773)
. |. . ++. .++..+...+
T Consensus 339 ~------------------------------------------~~---~---------------~~~---~ll~~l~~~~ 355 (618)
T 2whx_A 339 I------------------------------------------PE---R---------------SWN---TGFDWITDYQ 355 (618)
T ss_dssp C------------------------------------------CS---S---------------CCS---SSCHHHHHCC
T ss_pred C------------------------------------------CH---H---------------HHH---HHHHHHHhCC
Confidence 0 00 0 000 0011122236
Q ss_pred CcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCee-----
Q 004103 382 HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV----- 456 (773)
Q Consensus 382 ~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~V----- 456 (773)
.++||||+....++.+...|...|+++..+||. +|.++++.|+++... +|++|+++++|||++ +++|
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId~g~ 427 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVIDPRR 427 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEECCE
T ss_pred CCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEECcc
Confidence 799999999999999999999999999999984 788899999988776 899999999999996 8888
Q ss_pred ---------------EEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC-CHHHHHHHHHHHHH
Q 004103 457 ---------------IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG-SIEEVILERAKQKM 507 (773)
Q Consensus 457 ---------------I~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~-tiEe~i~~~~~~K~ 507 (773)
|+||.|-++..|+||+||++|.|..+. ..|.|++.. .-|...+..+..++
T Consensus 428 ~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 428 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCCCCCCTTCHHHHHHHH
T ss_pred eecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEccCCchhhHHHHHHHHhHh
Confidence 777888899999999999999986443 245666521 22334444444443
No 55
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.80 E-value=1.5e-18 Score=203.25 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=103.3
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 443 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a 443 (773)
..|+.+|...+......|.+|||||......+.|...|...|+++..++|.....++..+.+.|+.+. ++|+|+.
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G~-----VtIATnm 517 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRGG-----VTVATNM 517 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTTC-----EEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCCe-----EEEecch
Confidence 34888888888887778999999999999999999999999999999999988777777777887653 7999999
Q ss_pred ccccCCcccC----------------------------------------------------CeeEEeCCCCChhhHHHH
Q 004103 444 GGLGLNLQTA----------------------------------------------------DTVIIFDSDWNPQMDQQA 471 (773)
Q Consensus 444 gg~GLNL~~a----------------------------------------------------d~VI~~D~~wNp~~~~Qa 471 (773)
+|+|+|+... .+||.+|.|-++..|.|+
T Consensus 518 AgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr 597 (922)
T 1nkt_A 518 AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQL 597 (922)
T ss_dssp CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHH
T ss_pred hhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHH
Confidence 9999999864 499999999999999999
Q ss_pred hhhhhhcCCcCeEE
Q 004103 472 EDRAHRIGQKKEVR 485 (773)
Q Consensus 472 ~gRa~RiGQ~k~V~ 485 (773)
+||++|.|..-...
T Consensus 598 ~GRTGRqGdpG~s~ 611 (922)
T 1nkt_A 598 RGRSGRQGDPGESR 611 (922)
T ss_dssp HHTSSGGGCCEEEE
T ss_pred hcccccCCCCeeEE
Confidence 99999998765433
No 56
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.79 E-value=2.3e-18 Score=220.34 Aligned_cols=324 Identities=15% Similarity=0.164 Sum_probs=199.8
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc--------CCCCCEEEEeCC-cchHHHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK--------GVTGPHVIVAPK-AVLPNWINEF 124 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~--------~~~gp~LIVvP~-sll~qW~~E~ 124 (773)
.+|.+.|..++..++ +.+.|.+++.+||+|||+.|...+...+... ...+++|+|+|. +|..+-.++|
T Consensus 78 ~~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 78 KTLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp SBCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 379999999998666 3678899999999999999865554444321 123468999998 7777888888
Q ss_pred HhhcC--CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHh------HHHHhhcCeeEEEEccccccCChhh-
Q 004103 125 STWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD------RQYLKKVQWIYMIVDEGHRLKNHEC- 195 (773)
Q Consensus 125 ~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~------~~~l~~~~~~~vIiDEaH~lkn~~s- 195 (773)
.+.+. ++.|..+.|....... .....+|+|||+|.+..- ...+. ...+|||||+|.+.+...
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~~~-------~~~~~~IlVtTpEkld~llr~~~~~~~l~--~v~~vIiDEvH~l~d~RG~ 225 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLCKE-------EISATQIIVCTPEKWDIITRKGGERTYTQ--LVRLIILDEIHLLHDDRGP 225 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSCCT-------TGGGCSEEEECHHHHHHHTTSSTTHHHHT--TEEEEEETTGGGGGSTTHH
T ss_pred HHHHhhCCCEEEEEECCCCCCcc-------ccCCCCEEEECHHHHHHHHcCCccchhhc--CcCEEEEecchhcCCccHH
Confidence 76553 5678888886432110 114679999999987321 22232 478999999998865322
Q ss_pred HHHHHHHc-------c-ccceEEEecCCCCCCCHHHHHHhhccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHH
Q 004103 196 ALAKTISG-------Y-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLII 267 (773)
Q Consensus 196 ~~~~~l~~-------~-~~~~rllLTgTP~~n~~~el~~lL~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~ 267 (773)
.+-..+.+ . ...++++||||- .|+.|+ ..|+.......
T Consensus 226 ~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dv------------------A~wL~~~~~~~-------------- 271 (1724)
T 4f92_B 226 VLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDV------------------ATFLRVDPAKG-------------- 271 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHH------------------HHHTTCCHHHH--------------
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHH------------------HHHhCCCCCCC--------------
Confidence 22111211 1 344789999993 234443 44433210000
Q ss_pred HHHHhhhhhhhhhhhhhHHhhcCCCc-eeEEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCC
Q 004103 268 RRLHHVIRPFILRRKKDEVEKYLPGK-SQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPY 346 (773)
Q Consensus 268 ~~L~~~L~p~~lRR~k~dv~~~LP~k-~e~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~ 346 (773)
+ +.+. . ..-|-. .+.++.+.-.. .... ...+
T Consensus 272 ------~--~~~~---~---~~RPvpL~~~~~~~~~~~-------------------------~~~~-~~~~-------- 303 (1724)
T 4f92_B 272 ------L--FYFD---N---SFRPVPLEQTYVGITEKK-------------------------AIKR-FQIM-------- 303 (1724)
T ss_dssp ------E--EECC---G---GGCSSCEEEECCEECCCC-------------------------HHHH-HHHH--------
T ss_pred ------e--EEEC---C---CCccCccEEEEeccCCcc-------------------------hhhh-hHHH--------
Confidence 0 0000 0 001111 11111111000 0000 0000
Q ss_pred cccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHH----HhC------------------
Q 004103 347 LFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL----KLN------------------ 404 (773)
Q Consensus 347 l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L----~~~------------------ 404 (773)
...+...+... ..++++||||..+...+.++..| ...
T Consensus 304 --------------------~~~~~~~v~~~-~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (1724)
T 4f92_B 304 --------------------NEIVYEKIMEH-AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLR 362 (1724)
T ss_dssp --------------------HHHHHHHHTTC-CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHH
T ss_pred --------------------HHHHHHHHHHH-hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHH
Confidence 00111111111 24678999998875444333333 211
Q ss_pred ---------------CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEE----eCCC---
Q 004103 405 ---------------DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII----FDSD--- 462 (773)
Q Consensus 405 ---------------g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~----~D~~--- 462 (773)
...+...||+++.++|..+.+.|.+|... +|+||.+++.||||++.++||. ||+.
T Consensus 363 ~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~---vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~ 439 (1724)
T 4f92_B 363 TEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQ---VLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR 439 (1724)
T ss_dssp HTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCC---EEEECHHHHHHSCCCBSEEEEECCEEEETTTTE
T ss_pred hhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCe---EEEEcchhHhhCCCCCceEEEeCCEEecCcCCC
Confidence 23477899999999999999999999877 8999999999999998877773 6653
Q ss_pred ---CChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCH
Q 004103 463 ---WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 495 (773)
Q Consensus 463 ---wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ti 495 (773)
-++..+.|++|||+|.|....-.++.++..+..
T Consensus 440 ~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~ 475 (1724)
T 4f92_B 440 WTELGALDILQMLGRAGRPQYDTKGEGILITSHGEL 475 (1724)
T ss_dssp EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTC
T ss_pred cccCCHHHHHHhhhhccCCCCCCccEEEEEecchhH
Confidence 478999999999999998877777777776543
No 57
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.79 E-value=9.1e-20 Score=193.20 Aligned_cols=163 Identities=18% Similarity=0.236 Sum_probs=122.4
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~ 130 (773)
.+|+|||.+++.+++. +.++||+++||+|||+++++++..+.... .+++|||||. .++.||.+++.+|.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 4899999999999885 46789999999999999988887776542 3489999998 889999999999963 3
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc-ccceE
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQRR 209 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~-~~~~r 209 (773)
..+..+.+...... ......+|+|+||+.+.+.... ...++++|||||||++.+. .+...+..+ ...++
T Consensus 186 ~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~~-~~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~ 255 (282)
T 1rif_A 186 AMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGK--SISSIISGLNNCMFK 255 (282)
T ss_dssp GGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCGG-GGGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEE
T ss_pred ceEEEEeCCCcchh-------hhccCCcEEEEchHHHHhhHHH-HHhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeE
Confidence 45555554432211 1114678999999998765332 2236899999999999853 555566666 68899
Q ss_pred EEecCCCCCCCHHHHHHhhccccC
Q 004103 210 LLLTGTPIQNSLQELWSLLNFLLP 233 (773)
Q Consensus 210 llLTgTP~~n~~~el~~lL~~L~p 233 (773)
++|||||..+ ..+++.++.++.|
T Consensus 256 l~lSATp~~~-~~~~~~l~~l~g~ 278 (282)
T 1rif_A 256 FGLSGSLRDG-KANIMQYVGMFGE 278 (282)
T ss_dssp EEECSSCCTT-STTHHHHHHHHCE
T ss_pred EEEeCCCCCc-chHHHHHHHhcCC
Confidence 9999999644 4666666666544
No 58
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=1.2e-18 Score=170.73 Aligned_cols=123 Identities=22% Similarity=0.238 Sum_probs=111.8
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
.+.|+..|.+++... .+.++||||++...++.+...|...|+++..+||+++..+|..+++.|+++... +|++|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECC
Confidence 456999999999875 567999999999999999999999999999999999999999999999998776 799999
Q ss_pred cccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeC
Q 004103 443 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 492 (773)
Q Consensus 443 agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~ 492 (773)
++++|||++.+++||+||+|||+..+.|++||++|.|+...+ +.|++.
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~ 137 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSD 137 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE--EEEECS
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEE--EEEEcC
Confidence 999999999999999999999999999999999999987654 445544
No 59
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.78 E-value=8.5e-19 Score=209.85 Aligned_cols=110 Identities=17% Similarity=0.160 Sum_probs=96.3
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHh-----------CCCeEEEEcCCCCHHHHHHHHHhhc-----CCCCCcEEEEEeccc
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKL-----------NDFKFLRLDGSTKTEERGTLLKQFN-----APDSPYFMFLLSTRA 443 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~-----------~g~~~~~i~G~~~~~eR~~~i~~Fn-----~~~~~~~v~LlSt~a 443 (773)
.+.++|||+.....++.+...|.. .++.+..+||+++.++|..+++.|. +|. .-+||+|.+
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~---~kVlVAT~i 378 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPG---RKVVISTNI 378 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCC---EEEEEECTH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCc---eEEEEeCcH
Confidence 467999999999999999988874 6889999999999999999999998 544 347999999
Q ss_pred ccccCCcccCCeeEEeCC------------------CCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCH
Q 004103 444 GGLGLNLQTADTVIIFDS------------------DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 495 (773)
Q Consensus 444 gg~GLNL~~ad~VI~~D~------------------~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ti 495 (773)
++.|||++++++||.++. |.+...+.||.||++|. ++-.+|+|+++...
T Consensus 379 ae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 379 AETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred HHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 999999999999999766 78999999999999998 45678888876544
No 60
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.78 E-value=1.4e-18 Score=168.68 Aligned_cols=134 Identities=19% Similarity=0.306 Sum_probs=117.2
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
.+.|+..|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++... +|++|+
T Consensus 19 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T~ 93 (163)
T 2hjv_A 19 EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVATD 93 (163)
T ss_dssp GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECG
T ss_pred hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEECC
Confidence 467999999998764 567999999999999999999999999999999999999999999999998766 789999
Q ss_pred cccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHHHH
Q 004103 443 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 505 (773)
Q Consensus 443 agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~~~ 505 (773)
++++|+|++.+++||+||+|||+..+.|++||++|.|+...+ +.|++.. |...+..+.+
T Consensus 94 ~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~~ 152 (163)
T 2hjv_A 94 VAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIEE 152 (163)
T ss_dssp GGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHHH
T ss_pred hhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHHH
Confidence 999999999999999999999999999999999999987554 4556544 4445544443
No 61
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.78 E-value=1.2e-18 Score=204.68 Aligned_cols=106 Identities=20% Similarity=0.219 Sum_probs=95.1
Q ss_pred cEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcC--CCCCcEEEEEecccccccCCcccCCeeEEeC
Q 004103 383 RVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNA--PDSPYFMFLLSTRAGGLGLNLQTADTVIIFD 460 (773)
Q Consensus 383 kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~--~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D 460 (773)
..||||.....++.+...|...|+.+..+||+++.++|..+++.|++ +..+ +|++|++++.|||+ .+++||+++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~---VLVATdi~e~GlDi-~v~~VI~~~ 397 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK---ILVATDAIGMGLNL-SIRRIIFYS 397 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCC---EEEECGGGGSSCCC-CBSEEEESC
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeE---EEEeCcHHHCCcCc-CccEEEECC
Confidence 45888999999999999999999999999999999999999999998 4444 79999999999999 999999999
Q ss_pred C--------------CCChhhHHHHhhhhhhcCCc-CeEEEEEEEeC
Q 004103 461 S--------------DWNPQMDQQAEDRAHRIGQK-KEVRVFVLVSV 492 (773)
Q Consensus 461 ~--------------~wNp~~~~Qa~gRa~RiGQ~-k~V~V~rLi~~ 492 (773)
. |+++..+.|+.||++|.|+. .+..+|.+...
T Consensus 398 ~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 398 LIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp SBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 9 88999999999999999987 44667766544
No 62
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.78 E-value=2.1e-18 Score=178.15 Aligned_cols=145 Identities=24% Similarity=0.300 Sum_probs=113.4
Q ss_pred CcCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc
Q 004103 50 LLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA 128 (773)
Q Consensus 50 ~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~ 128 (773)
...+.+|+|||.+++..++. +.++|++++||+|||+++++++..+ .+++|||||. .++.||..++.+|
T Consensus 88 ~~~~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~- 156 (237)
T 2fz4_A 88 FDAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF- 156 (237)
T ss_dssp CCCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG-
T ss_pred ccCCCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC-
Confidence 33457999999999998763 4569999999999999998887653 4589999999 8889999999994
Q ss_pred CCce-EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccc
Q 004103 129 PSIA-AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ 207 (773)
Q Consensus 129 p~~~-v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~ 207 (773)
+.. +..+.|... ...+|+|+||+.+......+. ..|++|||||+|++.+.. ....+..+...
T Consensus 157 -~~~~v~~~~g~~~-------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~--~~~i~~~~~~~ 219 (237)
T 2fz4_A 157 -GEEYVGEFSGRIK-------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES--YVQIAQMSIAP 219 (237)
T ss_dssp -CGGGEEEESSSCB-------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--HHHHHHTCCCS
T ss_pred -CCCeEEEEeCCCC-------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--HHHHHHhccCC
Confidence 455 777877653 356899999999988776553 369999999999997654 34455677889
Q ss_pred eEEEecCCCCCCCHH
Q 004103 208 RRLLLTGTPIQNSLQ 222 (773)
Q Consensus 208 ~rllLTgTP~~n~~~ 222 (773)
++|+|||||..++-.
T Consensus 220 ~~l~LSATp~r~D~~ 234 (237)
T 2fz4_A 220 FRLGLTATFEREDGR 234 (237)
T ss_dssp EEEEEEESCC-----
T ss_pred EEEEEecCCCCCCCC
Confidence 999999999877643
No 63
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.77 E-value=3.8e-18 Score=198.31 Aligned_cols=261 Identities=17% Similarity=0.152 Sum_probs=170.2
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFF 151 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~ 151 (773)
++.+.|+..+||+|||.++...+. +. ...+||++|+ .+..|+.+.+.+.+. ..+....|...
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll---~~---g~~vLVl~PTReLA~Qia~~l~~~~g-~~vg~~vG~~~---------- 293 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYA---AQ---GYKVLVLNPSVAATLGFGAYMSKAHG-IDPNIRTGVRT---------- 293 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH---HT---TCCEEEEESCHHHHHHHHHHHHHHHS-CCCEEECSSCE----------
T ss_pred cCCeEEEEeCCchhHHHHHHHHHH---HC---CCeEEEEcchHHHHHHHHHHHHHHhC-CCeeEEECcEe----------
Confidence 566788999999999977654433 22 2379999999 677888887776653 33334444322
Q ss_pred hhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhh-HHHHHHHcccc---ceEEEecCCCCCCCHHHHHHh
Q 004103 152 SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC-ALAKTISGYQI---QRRLLLTGTPIQNSLQELWSL 227 (773)
Q Consensus 152 ~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s-~~~~~l~~~~~---~~rllLTgTP~~n~~~el~~l 227 (773)
.....+|+|+|++.+..+. .+...++++|||||||.+..... .+...+..+.. ...+++||||-..
T Consensus 294 -~~~~~~IlV~TPGrLl~~~-~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~-------- 363 (666)
T 3o8b_A 294 -ITTGAPVTYSTYGKFLADG-GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGS-------- 363 (666)
T ss_dssp -ECCCCSEEEEEHHHHHHTT-SCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC--------
T ss_pred -ccCCCCEEEECcHHHHhCC-CcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcc--------
Confidence 1167899999999985432 23344689999999987742221 23333444432 2357789998531
Q ss_pred hccccCCCCCChHhHHHHhcccccccCCccCChHHHHHHHHHHHhhhhhhhhhhhhhHHhhcCCCceeEEEEecCCHHHH
Q 004103 228 LNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQK 307 (773)
Q Consensus 228 L~~L~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~~~~s~~q~ 307 (773)
+..- .|... .+.......
T Consensus 364 i~~~----------------------------------------------------------~p~i~--~v~~~~~~~-- 381 (666)
T 3o8b_A 364 VTVP----------------------------------------------------------HPNIE--EVALSNTGE-- 381 (666)
T ss_dssp CCCC----------------------------------------------------------CTTEE--EEECBSCSS--
T ss_pred cccC----------------------------------------------------------CcceE--EEeecccch--
Confidence 0000 00000 000000000
Q ss_pred HHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhcCCcEEEE
Q 004103 308 VYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLF 387 (773)
Q Consensus 308 ~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~g~kvLIF 387 (773)
.. ++ .. .-. +. ...+.++|||
T Consensus 382 -----------i~-------------------------~~--~~------------~~~-------l~--~~~~~~vLVF 402 (666)
T 3o8b_A 382 -----------IP-------------------------FY--GK------------AIP-------IE--AIRGGRHLIF 402 (666)
T ss_dssp -----------EE-------------------------ET--TE------------EEC-------GG--GSSSSEEEEE
T ss_pred -----------hH-------------------------HH--Hh------------hhh-------hh--hccCCcEEEE
Confidence 00 00 00 000 00 1146799999
Q ss_pred eecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeE----------
Q 004103 388 SQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI---------- 457 (773)
Q Consensus 388 sq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI---------- 457 (773)
++....++.+...|...|+++..+||+++.++ |.++.. -+|++|+++++|||+. +++||
T Consensus 403 v~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~---~VLVATdVaerGIDId-V~~VI~~Gl~~~~Vi 471 (666)
T 3o8b_A 403 CHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD---VVVVATDALMTGYTGD-FDSVIDCNTCVTQTV 471 (666)
T ss_dssp CSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC---EEEEECTTHHHHCCCC-BSEEEECCEEEEEEE
T ss_pred eCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC---cEEEECChHHccCCCC-CcEEEecCccccccc
Confidence 99999999999999999999999999999764 444333 3799999999999986 99988
Q ss_pred EeC-----------CCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHH
Q 004103 458 IFD-----------SDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 496 (773)
Q Consensus 458 ~~D-----------~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiE 496 (773)
+|| .|-++..|+||+||++| |..- . |.|++....+
T Consensus 472 NyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G--~-i~lvt~~e~~ 517 (666)
T 3o8b_A 472 DFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG--I-YRFVTPGERP 517 (666)
T ss_dssp ECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE--E-EEESCCCCBC
T ss_pred ccccccccccccccCcCCHHHHHHHhccCCC-CCCC--E-EEEEecchhh
Confidence 566 77888999999999999 6543 2 7888876543
No 64
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.77 E-value=7.9e-19 Score=174.23 Aligned_cols=125 Identities=23% Similarity=0.299 Sum_probs=99.1
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
.+.|+..|.+++.... .+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+++... +|++|+
T Consensus 29 ~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 104 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVATA 104 (185)
T ss_dssp GGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEEC
T ss_pred cHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEcC
Confidence 4679999999998753 578999999999999999999999999999999999999999999999988776 799999
Q ss_pred cccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 443 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 443 agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
++++|||++.+++||+||+|||+..+.|++||++|.|+.. .++.|++..
T Consensus 105 ~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~ 153 (185)
T 2jgn_A 105 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNER 153 (185)
T ss_dssp ------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCE--EEEEEECGG
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCc--EEEEEEchh
Confidence 9999999999999999999999999999999999999764 455566654
No 65
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.75 E-value=9.2e-17 Score=189.38 Aligned_cols=122 Identities=22% Similarity=0.183 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccc
Q 004103 367 FELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL 446 (773)
Q Consensus 367 ~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~ 446 (773)
+..|...+......+.++||||.....++.|..+|...|+++..+||.++..+|..+++.|..|... +|++|+++++
T Consensus 431 ~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~l~~ 507 (661)
T 2d7d_A 431 IDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINLLRE 507 (661)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCCCST
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecchhhC
Confidence 3344444555556688999999999999999999999999999999999999999999999987766 8999999999
Q ss_pred cCCcccCCeeEEeCC-----CCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCC
Q 004103 447 GLNLQTADTVIIFDS-----DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 494 (773)
Q Consensus 447 GLNL~~ad~VI~~D~-----~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~t 494 (773)
|+|++.+++||++|. ++++..++|++||++|. ++-.++.|++..+
T Consensus 508 GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 508 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---AEGRVIMYADKIT 557 (661)
T ss_dssp TCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCC
T ss_pred CcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCC
Confidence 999999999999998 89999999999999996 2445666777654
No 66
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.75 E-value=6.8e-18 Score=164.16 Aligned_cols=123 Identities=24% Similarity=0.328 Sum_probs=108.1
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
.|+..|.+++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++... +|++|+++
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~ 90 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLL 90 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGG
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChh
Confidence 3899999998875 567999999999999999999999999999999999999999999999998776 78999999
Q ss_pred cccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCC
Q 004103 445 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 494 (773)
Q Consensus 445 g~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~t 494 (773)
++|+|++.+++||+||+|||+..+.|++||++|.|+... ++.|++.+.
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~ 138 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNED 138 (165)
T ss_dssp TTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTT
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchH
Confidence 999999999999999999999999999999999997654 456677664
No 67
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.75 E-value=4e-18 Score=170.03 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=107.6
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
...|+..|.+++.. .+.++||||++...++.+..+|...|+++..++|+++..+|..+++.|+++... +|++|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEcC
Confidence 35688888887765 356899999999999999999999999999999999999999999999988766 799999
Q ss_pred cccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 443 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 443 agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
++++|||++.+++||+||+|||+..+.||+||++|.|++..+ +.|++..
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 999999999999999999999999999999999999997644 4556654
No 68
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=162.22 Aligned_cols=123 Identities=19% Similarity=0.322 Sum_probs=107.1
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
.|+..|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++... +|++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecch
Confidence 4888888888765 467999999999999999999999999999999999999999999999998776 79999999
Q ss_pred cccCCcccCCeeEEeCCC------CChhhHHHHhhhhhhcCCcCeEEEEEEEeCCC
Q 004103 445 GLGLNLQTADTVIIFDSD------WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 494 (773)
Q Consensus 445 g~GLNL~~ad~VI~~D~~------wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~t 494 (773)
++|||++.+++||+||+| +++..+.|++||++|.|+. ..++.|++.+.
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 999999999999999999 6778999999999999954 55677777664
No 69
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.73 E-value=9.2e-16 Score=180.93 Aligned_cols=124 Identities=18% Similarity=0.156 Sum_probs=109.3
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
+++..|...|......+.++||||.....++.|..+|...|+++..+||+++..+|..+++.|..|... +|++|+++
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~~l 499 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINLL 499 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCCC
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccChh
Confidence 456666666666666789999999999999999999999999999999999999999999999988776 89999999
Q ss_pred cccCCcccCCeeEEeCC-----CCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCC
Q 004103 445 GLGLNLQTADTVIIFDS-----DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 494 (773)
Q Consensus 445 g~GLNL~~ad~VI~~D~-----~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~t 494 (773)
++|+|++.+++||++|. ++++..++|++||++|.|. -.++.|+...+
T Consensus 500 ~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 500 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp CTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred hcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 99999999999999998 8999999999999999863 34566666654
No 70
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.71 E-value=6.8e-17 Score=163.84 Aligned_cols=132 Identities=23% Similarity=0.283 Sum_probs=114.8
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
.+.|+..|.+++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++... +|++|+
T Consensus 15 ~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT~ 89 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVATD 89 (212)
T ss_dssp TTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEECT
T ss_pred HHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEecC
Confidence 467999999999753 477999999999999999999999999999999999999999999999998776 799999
Q ss_pred cccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCCCHHHHHHHHH
Q 004103 443 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 503 (773)
Q Consensus 443 agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~tiEe~i~~~~ 503 (773)
++++|||++.+++||+||+||++..+.|++||++|.|+.. .++.|++.. |...+..+
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~--~~~~~~~i 146 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR--ERRDVEAL 146 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG--GHHHHHHH
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh--HHHHHHHH
Confidence 9999999999999999999999999999999999999764 555666654 34444433
No 71
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.70 E-value=1.6e-16 Score=161.51 Aligned_cols=162 Identities=12% Similarity=0.140 Sum_probs=115.9
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc---CC
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---PS 130 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~---p~ 130 (773)
+|+|||.+++..++ ++.++|++++||+|||++++..+...........++|||||. .++.||.+++.++. |+
T Consensus 36 ~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 59999999999888 467899999999999998877776654433333489999999 88899999999886 46
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCCh-h--hHHHHHHHccc
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH-E--CALAKTISGYQ 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~-~--s~~~~~l~~~~ 205 (773)
..+.++.|.......... +.. ...+|+|+|++.+...... +....+++|||||||++... . ..+...+..+.
T Consensus 112 ~~v~~~~g~~~~~~~~~~-~~~--~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~ 188 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDEEV-LKK--NCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 188 (220)
T ss_dssp CCEEEESCCSCHHHHHHH-HHH--SCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC
T ss_pred ceEEEEeCCCChHHHHHH-Hhc--CCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC
Confidence 788888886543332221 111 4579999999998764332 22336889999999998542 2 23333344443
Q ss_pred -cceEEEecCCCCCCCHHHH
Q 004103 206 -IQRRLLLTGTPIQNSLQEL 224 (773)
Q Consensus 206 -~~~rllLTgTP~~n~~~el 224 (773)
....+++||||-.+ ..++
T Consensus 189 ~~~~~i~~SAT~~~~-~~~~ 207 (220)
T 1t6n_A 189 HEKQVMMFSATLSKE-IRPV 207 (220)
T ss_dssp SSSEEEEEESCCCTT-THHH
T ss_pred CcCeEEEEEeecCHH-HHHH
Confidence 56789999998543 4443
No 72
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.70 E-value=1.4e-16 Score=160.00 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=114.4
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh---cCCCCCEEEEeCC-cchHHHHHHHHhhcC
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN---KGVTGPHVIVAPK-AVLPNWINEFSTWAP 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~---~~~~gp~LIVvP~-sll~qW~~E~~k~~p 129 (773)
.+|+|||.+++..++ ++.++++..+||+|||++++..+...+.. .....++|||+|. .++.||.+++.++++
T Consensus 22 ~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 97 (207)
T 2gxq_A 22 TTPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP 97 (207)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh
Confidence 379999999999888 47889999999999999876655544322 1234579999999 889999999999998
Q ss_pred CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCCh--hhHHHHHHHccc
Q 004103 130 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTISGYQ 205 (773)
Q Consensus 130 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~--~s~~~~~l~~~~ 205 (773)
...+..+.|............ ..++|+|+|++.+...... +....+++|||||||++.+. ...+...+..++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~ 173 (207)
T 2gxq_A 98 HLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP 173 (207)
T ss_dssp TSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSC
T ss_pred cceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCC
Confidence 888888877654333222211 3678999999998765432 22346889999999998432 334445555554
Q ss_pred -cceEEEecCCCC
Q 004103 206 -IQRRLLLTGTPI 217 (773)
Q Consensus 206 -~~~rllLTgTP~ 217 (773)
....+++||||-
T Consensus 174 ~~~~~i~~SAT~~ 186 (207)
T 2gxq_A 174 PSRQTLLFSATLP 186 (207)
T ss_dssp TTSEEEEECSSCC
T ss_pred ccCeEEEEEEecC
Confidence 556899999983
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.70 E-value=1.1e-15 Score=175.61 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=102.5
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
...|+.++.+.+......+.+|||||.+....+.|...|...|+++..++|.....+|..+...|..+. ++|+|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g~-----VtVATd 530 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGM-----VTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTC-----EEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCCe-----EEEEcc
Confidence 346889999999888778999999999999999999999999999999999966666655566776643 799999
Q ss_pred cccccCCcc--------cCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeE
Q 004103 443 AGGLGLNLQ--------TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 484 (773)
Q Consensus 443 agg~GLNL~--------~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V 484 (773)
.+|+|+|+. +..+||++|.|-++..|.|++||++|.|..-..
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 999999998 567999999999999999999999999977654
No 74
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.53 E-value=1.2e-18 Score=170.42 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=108.2
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 443 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a 443 (773)
+.|+..|..++.. ..+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++... +|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN---VLVATDV 89 (170)
Confidence 5688888888876 3567999999999999999999999999999999999999999999999987765 7999999
Q ss_pred ccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEE
Q 004103 444 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRV 486 (773)
Q Consensus 444 gg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V 486 (773)
+++|+|++.+++||+||+|||+..+.|++||++|.|+...+.+
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 9999999999999999999999999999999999998766543
No 75
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.68 E-value=7.9e-17 Score=162.56 Aligned_cols=155 Identities=19% Similarity=0.260 Sum_probs=104.9
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc---CCCCCEEEEeCC-cchHH-HHHHHHhh
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK---GVTGPHVIVAPK-AVLPN-WINEFSTW 127 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~---~~~gp~LIVvP~-sll~q-W~~E~~k~ 127 (773)
+.+|+|||.+++..++ ++.++|+.++||+|||++++.++..+.... ...+++|||||. .++.| |.+++.++
T Consensus 31 ~~~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 3589999999999888 467899999999999999988887665432 235689999999 77788 99999998
Q ss_pred cC-CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--------HhhcCeeEEEEccccccCChhh--H
Q 004103 128 AP-SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--------LKKVQWIYMIVDEGHRLKNHEC--A 196 (773)
Q Consensus 128 ~p-~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--------l~~~~~~~vIiDEaH~lkn~~s--~ 196 (773)
.+ ...+..+.|............ ...+|+|+||+.+...... +....|++|||||||++..... .
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~ 182 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNN 182 (216)
T ss_dssp HTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHH
T ss_pred hccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHH
Confidence 75 467777777553222111111 3478999999999765433 2234789999999999954321 1
Q ss_pred H-HHHHHcc--------------ccceEEEecCC
Q 004103 197 L-AKTISGY--------------QIQRRLLLTGT 215 (773)
Q Consensus 197 ~-~~~l~~~--------------~~~~rllLTgT 215 (773)
+ ...+... ...++++||||
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 183 IMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 1 1111111 34678999998
No 76
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.67 E-value=3.3e-16 Score=157.29 Aligned_cols=156 Identities=14% Similarity=0.098 Sum_probs=113.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc---C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---P 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~---p 129 (773)
.+|+|||.+++..++ ++.++++..+||+|||++++..+...........++|||+|. .++.||..++.++. +
T Consensus 24 ~~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 99 (206)
T 1vec_A 24 EKPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG 99 (206)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 379999999999887 478899999999999988776555443333334579999999 88899999998876 3
Q ss_pred CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCChh--hHHHHHHHccc
Q 004103 130 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQ 205 (773)
Q Consensus 130 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~~--s~~~~~l~~~~ 205 (773)
+..+..+.|........... ...++|+|+|++.+...... +....+++|||||||++...+ ..+...+..++
T Consensus 100 ~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~ 175 (206)
T 1vec_A 100 GAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP 175 (206)
T ss_dssp SCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSC
T ss_pred CceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCC
Confidence 67788887766544332221 25789999999998654331 122368899999999986532 33444445554
Q ss_pred -cceEEEecCCCC
Q 004103 206 -IQRRLLLTGTPI 217 (773)
Q Consensus 206 -~~~rllLTgTP~ 217 (773)
...++++|||+-
T Consensus 176 ~~~~~l~~SAT~~ 188 (206)
T 1vec_A 176 KNRQILLYSATFP 188 (206)
T ss_dssp TTCEEEEEESCCC
T ss_pred ccceEEEEEeeCC
Confidence 567899999984
No 77
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.67 E-value=8.9e-16 Score=159.51 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=115.2
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~ 130 (773)
..|+|||.+++..++ ++.+.|+..+||+|||++++..+...+........+|||+|. .++.||.+++.++.. +
T Consensus 64 ~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 139 (249)
T 3ber_A 64 TKPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG 139 (249)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 489999999999888 578899999999999999776665554444445579999999 888999999999865 4
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHH---hhcCeeEEEEccccccCCh--hhHHHHHHHccc
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL---KKVQWIYMIVDEGHRLKNH--ECALAKTISGYQ 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l---~~~~~~~vIiDEaH~lkn~--~s~~~~~l~~~~ 205 (773)
+.+..+.|........... ...++|+|+|++.+....... ....+++|||||||++.+. ...+...+..++
T Consensus 140 ~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~ 215 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP 215 (249)
T ss_dssp CCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSC
T ss_pred eeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCC
Confidence 6677777765433322221 157899999999997754432 2235889999999998543 334455555554
Q ss_pred -cceEEEecCCCC
Q 004103 206 -IQRRLLLTGTPI 217 (773)
Q Consensus 206 -~~~rllLTgTP~ 217 (773)
...++++|||+-
T Consensus 216 ~~~~~l~~SAT~~ 228 (249)
T 3ber_A 216 RDRKTFLFSATMT 228 (249)
T ss_dssp SSSEEEEEESSCC
T ss_pred CCCeEEEEeccCC
Confidence 567899999974
No 78
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.67 E-value=5e-16 Score=159.22 Aligned_cols=153 Identities=16% Similarity=0.149 Sum_probs=111.9
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc---CC
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---PS 130 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~---p~ 130 (773)
.|+|||.+++..++ ++.+.|+..+||+|||++++..+...+.......++|||+|. .++.||.+++.++. ++
T Consensus 46 ~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGR----CGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 69999999999887 478899999999999998655444333223344689999999 89999999999986 36
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHH--HHhhcCeeEEEEccccccCCh---hhHHHHHHHccc
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNH---ECALAKTISGYQ 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaH~lkn~---~s~~~~~l~~~~ 205 (773)
+.+.++.|.......... ....+|+|+|++.+..... .+...++++|||||||++... ...+...+..++
T Consensus 122 ~~~~~~~g~~~~~~~~~~-----~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~ 196 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDKTR-----LKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP 196 (230)
T ss_dssp CCEEEECTTSCHHHHHHH-----TTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEeCCCCHHHHHHh-----ccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCC
Confidence 788888876543332211 1468999999999976432 122336789999999998443 334444555564
Q ss_pred -cceEEEecCCC
Q 004103 206 -IQRRLLLTGTP 216 (773)
Q Consensus 206 -~~~rllLTgTP 216 (773)
..+++++|||+
T Consensus 197 ~~~~~l~lSAT~ 208 (230)
T 2oxc_A 197 ASKQMLAVSATY 208 (230)
T ss_dssp SSCEEEEEESCC
T ss_pred CCCeEEEEEecc
Confidence 56689999996
No 79
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.66 E-value=1.1e-15 Score=157.15 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=113.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc----CCCCCEEEEeCC-cchHHHHHHHHhhc
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK----GVTGPHVIVAPK-AVLPNWINEFSTWA 128 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~----~~~gp~LIVvP~-sll~qW~~E~~k~~ 128 (773)
..|+|||.+++.+++ ++.++|++.+||+|||++++..+...+... ....++|||+|+ .++.||.+++.++.
T Consensus 46 ~~~~~~Q~~~i~~~~----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 46 RLVTEIQKQTIGLAL----QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CBCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 479999999999888 578899999999999999766555443321 223478999999 88999999999987
Q ss_pred CC--ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH---HhhcCeeEEEEccccccCCh--hhHHHHHH
Q 004103 129 PS--IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKNH--ECALAKTI 201 (773)
Q Consensus 129 p~--~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~---l~~~~~~~vIiDEaH~lkn~--~s~~~~~l 201 (773)
+. ..+..+.|.......... + ...+|+|+|++.+...... +....+++|||||||++.+. ...+...+
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~-~----~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~ 196 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAER-I----NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVI 196 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHHH-H----TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHH
T ss_pred CCCCeeEEEEECCCCHHHHHHh-C----CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHH
Confidence 53 677777776544332221 1 5689999999999765433 22346889999999998643 34455555
Q ss_pred Hccc-cceEEEecCCCC
Q 004103 202 SGYQ-IQRRLLLTGTPI 217 (773)
Q Consensus 202 ~~~~-~~~rllLTgTP~ 217 (773)
..++ ...+++||||+-
T Consensus 197 ~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 197 ENLPKKRQTLLFSATQT 213 (236)
T ss_dssp HTSCTTSEEEEEESSCC
T ss_pred HhCCCCCeEEEEEeeCC
Confidence 6664 456899999973
No 80
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.65 E-value=9.8e-16 Score=163.18 Aligned_cols=124 Identities=21% Similarity=0.284 Sum_probs=109.4
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
.+.|+..|.+++.... +.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++..+ +|++|+
T Consensus 12 ~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT~ 86 (300)
T 3i32_A 12 VRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVATD 86 (300)
T ss_dssp SSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEECS
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEec
Confidence 4679999999997753 78999999999999999999999999999999999999999999999998776 899999
Q ss_pred cccccCCcccCCeeEEeCCCCChhhHHHHhhhhhhcCCcCeEEEEEEEeCC
Q 004103 443 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 493 (773)
Q Consensus 443 agg~GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiGQ~k~V~V~rLi~~~ 493 (773)
++++|||++.+++||+||+||++..|.|++||++|.|+. -.+|.|++..
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~--G~~i~l~~~~ 135 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPR 135 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-------CEEEEEECSS
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCC--ceEEEEeChH
Confidence 999999999999999999999999999999999999976 4556677765
No 81
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.64 E-value=1.1e-15 Score=155.50 Aligned_cols=155 Identities=12% Similarity=0.081 Sum_probs=107.2
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~ 130 (773)
..|+|||.+++..++ ++.++|+..+||+|||++++..+...+.......++|||+|. .++.||.+++.++++ +
T Consensus 35 ~~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (224)
T 1qde_A 35 EEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 110 (224)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccC
Confidence 379999999999887 477899999999999998554444433333345589999999 888999999999875 5
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCCh--hhHHHHHHHcc-c
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTISGY-Q 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~--~s~~~~~l~~~-~ 205 (773)
..+..+.|......... .....+|+|+|++.+...... +....+++|||||||++... ...+...+..+ .
T Consensus 111 ~~~~~~~g~~~~~~~~~-----~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~ 185 (224)
T 1qde_A 111 IKVHACIGGTSFVEDAE-----GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP 185 (224)
T ss_dssp CCEEEECC---------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT
T ss_pred ceEEEEeCCcchHHHHh-----cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCc
Confidence 66777777654322211 113489999999998754322 12235789999999998542 33344455555 3
Q ss_pred cceEEEecCCCC
Q 004103 206 IQRRLLLTGTPI 217 (773)
Q Consensus 206 ~~~rllLTgTP~ 217 (773)
....++||||+-
T Consensus 186 ~~~~i~lSAT~~ 197 (224)
T 1qde_A 186 TTQVVLLSATMP 197 (224)
T ss_dssp TCEEEEEESSCC
T ss_pred cCeEEEEEeecC
Confidence 456899999984
No 82
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.64 E-value=3.8e-15 Score=154.77 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=111.4
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC---------CCCCEEEEeCC-cchHHHHHH
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG---------VTGPHVIVAPK-AVLPNWINE 123 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~---------~~gp~LIVvP~-sll~qW~~E 123 (773)
.+|+|||.+++..++ .+.+.|+..+||+|||++++..+...+.... ...++|||||+ .++.||.++
T Consensus 44 ~~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 44 QRPTPIQKNAIPAIL----EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 479999999999888 4778999999999999997766655544321 22479999999 889999999
Q ss_pred HHhhcC--CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCCh--hhHH
Q 004103 124 FSTWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECAL 197 (773)
Q Consensus 124 ~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~--~s~~ 197 (773)
+.++.. ...+..+.|........... ...++|+|+|++.+...... +....+++|||||||++.+. ...+
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~ 195 (253)
T 1wrb_A 120 SQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQI 195 (253)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHH
T ss_pred HHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHH
Confidence 999874 35666666655433322221 15689999999999764332 12235689999999998543 3345
Q ss_pred HHHHHcc--c---cceEEEecCCCC
Q 004103 198 AKTISGY--Q---IQRRLLLTGTPI 217 (773)
Q Consensus 198 ~~~l~~~--~---~~~rllLTgTP~ 217 (773)
...+..+ . ....+++||||-
T Consensus 196 ~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 196 RKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp HHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred HHHHhhccCCCCCCcEEEEEEEeCC
Confidence 5555532 2 456899999973
No 83
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.63 E-value=4.8e-16 Score=157.97 Aligned_cols=162 Identities=17% Similarity=0.093 Sum_probs=114.5
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC---
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--- 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--- 129 (773)
.+|+|||.+++..+++ +.++|++.+||+|||++++..+............+|||+|+ .++.||.+++.++..
T Consensus 25 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 100 (219)
T 1q0u_A 25 YKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 100 (219)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcc
Confidence 3799999999998884 67899999999999998766555544333334579999999 888999999988864
Q ss_pred ---CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCCh--hhHHHHHHH
Q 004103 130 ---SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTIS 202 (773)
Q Consensus 130 ---~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~--~s~~~~~l~ 202 (773)
...+..+.|......... .....++|+|+|++.+...... +....+++|||||||++.+. ...+...+.
T Consensus 101 ~~~~~~~~~~~g~~~~~~~~~----~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~ 176 (219)
T 1q0u_A 101 KDRMIVARCLIGGTDKQKALE----KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAA 176 (219)
T ss_dssp GGGCCCEEEECCCSHHHHTTC----CCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHH
T ss_pred cccceEEEEEeCCCCHHHHHH----HcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHH
Confidence 456667776654332111 1114678999999998764321 22236789999999998543 334555556
Q ss_pred ccc-cceEEEecCCCCCCCHHHH
Q 004103 203 GYQ-IQRRLLLTGTPIQNSLQEL 224 (773)
Q Consensus 203 ~~~-~~~rllLTgTP~~n~~~el 224 (773)
.++ ...++++|||+ .+.+.++
T Consensus 177 ~~~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 177 RMPKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp TSCTTCEEEEEESCC-CGGGHHH
T ss_pred hCCcccEEEEEecCC-CHHHHHH
Confidence 664 45789999997 3444443
No 84
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.62 E-value=1.4e-15 Score=156.75 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=108.4
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~ 130 (773)
..|+|||.+++..++ ++.++|+..+||+|||++++..+...+.......++|||+|+ .++.||.+++.+++. +
T Consensus 51 ~~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (237)
T 3bor_A 51 EKPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMG 126 (237)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcC
Confidence 369999999999888 477899999999999998766555544333344589999999 888999999999875 4
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccC--ChhhHHHHHHHccc-
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLK--NHECALAKTISGYQ- 205 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lk--n~~s~~~~~l~~~~- 205 (773)
..+..+.|.......... +. ...++|+|+|++.+...... +....+++|||||||++. +....+...+..+.
T Consensus 127 ~~~~~~~g~~~~~~~~~~-l~--~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~ 203 (237)
T 3bor_A 127 ATCHACIGGTNVRNEMQK-LQ--AEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 203 (237)
T ss_dssp CCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCT
T ss_pred ceEEEEECCCchHHHHHH-Hh--cCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCC
Confidence 566666665443322211 11 13489999999998764322 223358899999999984 33444555555554
Q ss_pred cceEEEecCCCC
Q 004103 206 IQRRLLLTGTPI 217 (773)
Q Consensus 206 ~~~rllLTgTP~ 217 (773)
....+++|||+-
T Consensus 204 ~~~~i~~SAT~~ 215 (237)
T 3bor_A 204 SIQVVLLSATMP 215 (237)
T ss_dssp TCEEEEECSSCC
T ss_pred CCeEEEEEEecC
Confidence 456799999984
No 85
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.58 E-value=1.5e-14 Score=147.87 Aligned_cols=155 Identities=12% Similarity=0.178 Sum_probs=107.4
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh------cCCCCCEEEEeCC-cchHHHHHHHHh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN------KGVTGPHVIVAPK-AVLPNWINEFST 126 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~------~~~~gp~LIVvP~-sll~qW~~E~~k 126 (773)
.+|+|||.+++..++ ++.+.|+..+||+|||+.++..+...+.. ......+|||+|+ .++.||.+++.+
T Consensus 41 ~~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 116 (228)
T 3iuy_A 41 LKPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSK 116 (228)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 379999999999887 57889999999999999876555443321 1234578999999 788999999999
Q ss_pred hc-CCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCCh--hhHHHHHH
Q 004103 127 WA-PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTI 201 (773)
Q Consensus 127 ~~-p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~--~s~~~~~l 201 (773)
+. ++..+..+.|............ ..++|+|+|++.+...... +...++++|||||||++... ...+...+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~ 192 (228)
T 3iuy_A 117 YSYKGLKSICIYGGRNRNGQIEDIS----KGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL 192 (228)
T ss_dssp HCCTTCCEEEECC------CHHHHH----SCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHH
T ss_pred hcccCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHH
Confidence 85 4667777766554332222111 5689999999999764321 12235789999999997543 33445555
Q ss_pred Hccc-cceEEEecCCC
Q 004103 202 SGYQ-IQRRLLLTGTP 216 (773)
Q Consensus 202 ~~~~-~~~rllLTgTP 216 (773)
..+. ....+++|||.
T Consensus 193 ~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 193 LDVRPDRQTVMTSATW 208 (228)
T ss_dssp HHSCSSCEEEEEESCC
T ss_pred HhCCcCCeEEEEEeeC
Confidence 5554 55779999995
No 86
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.56 E-value=3.9e-14 Score=148.24 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=110.2
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc----CCCCCEEEEeCC-cchHHHHHHHHhhcC
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK----GVTGPHVIVAPK-AVLPNWINEFSTWAP 129 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~----~~~gp~LIVvP~-sll~qW~~E~~k~~p 129 (773)
+|+|+|.+++..++. +.+.|+..+||+|||++++..+...+... .....+|||+|+ .++.||..++.+++.
T Consensus 76 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 599999999988874 67889999999999999766555544431 124468999999 888999999999875
Q ss_pred --CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHh---hcCeeEEEEccccccCCh--hhHHHHHHH
Q 004103 130 --SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK---KVQWIYMIVDEGHRLKNH--ECALAKTIS 202 (773)
Q Consensus 130 --~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~---~~~~~~vIiDEaH~lkn~--~s~~~~~l~ 202 (773)
...+..+.|........... . ..++|+|+|++.+........ ...+++|||||||++... ...+...+.
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~-~---~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~ 227 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQKL-G---NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 227 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHHHH-H---HCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHH
T ss_pred hcCceEEEEECCCCHHHHHHHh-c---CCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHH
Confidence 35556666654433322211 1 348999999999976544322 235789999999997543 334445555
Q ss_pred ccc-cceEEEecCCCC
Q 004103 203 GYQ-IQRRLLLTGTPI 217 (773)
Q Consensus 203 ~~~-~~~rllLTgTP~ 217 (773)
.+. ....++||||+-
T Consensus 228 ~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 228 LLPTRRQTMLFSATQT 243 (262)
T ss_dssp HSCSSSEEEEECSSCC
T ss_pred hCCCCCeEEEEEecCC
Confidence 553 456899999974
No 87
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=147.97 Aligned_cols=156 Identities=16% Similarity=0.178 Sum_probs=106.9
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc-CCCCCEEEEeCC-cchHHHHHHHHhhcCC-
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPK-AVLPNWINEFSTWAPS- 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~-~~~gp~LIVvP~-sll~qW~~E~~k~~p~- 130 (773)
..|+|||.+++..++ ++.+.++..+||+|||++++..+...+... .....+|||+|+ .++.||.+++.+++..
T Consensus 50 ~~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 125 (245)
T 3dkp_A 50 QMPTPIQMQAIPVML----HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGT 125 (245)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 369999999999887 477899999999999999765555444322 233369999999 8889999999998753
Q ss_pred -ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH----HhhcCeeEEEEccccccCC-----hhhHHHHH
Q 004103 131 -IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY----LKKVQWIYMIVDEGHRLKN-----HECALAKT 200 (773)
Q Consensus 131 -~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~----l~~~~~~~vIiDEaH~lkn-----~~s~~~~~ 200 (773)
..+..+.|......... ......++|+|+|++.+...... +...++.+|||||||++.. ....+...
T Consensus 126 ~~~~~~~~~~~~~~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i 202 (245)
T 3dkp_A 126 GFRIHMIHKAAVAAKKFG---PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASI 202 (245)
T ss_dssp CCCEECCCHHHHHHTTTS---TTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHH
T ss_pred CceEEEEecCccHHHHhh---hhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHH
Confidence 44555544332211100 01125679999999999764432 2223678999999999853 22333344
Q ss_pred HHcc--ccceEEEecCCC
Q 004103 201 ISGY--QIQRRLLLTGTP 216 (773)
Q Consensus 201 l~~~--~~~~rllLTgTP 216 (773)
+..+ ...+.++||||+
T Consensus 203 ~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 203 FLACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHHCCCTTCEEEEEESSC
T ss_pred HHhcCCCCcEEEEEeccC
Confidence 4333 345789999997
No 88
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.55 E-value=5.6e-14 Score=145.07 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=110.2
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc-----CCCCCEEEEeCC-cchHHHHHHHHhh
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-----GVTGPHVIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~-----~~~gp~LIVvP~-sll~qW~~E~~k~ 127 (773)
.+|+|||.+++..++ ++.+.++..+||+|||+.++..+...+... .....+|||+|+ .++.||.+.+.++
T Consensus 50 ~~~~~~Q~~~i~~~~----~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 50 TEPTAIQAQGWPVAL----SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp CSCCHHHHHHHHHHH----HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 369999999999887 477899999999999999766655544421 234568999999 8889999999887
Q ss_pred cC--CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH--HhhcCeeEEEEccccccCCh--hhHHHHHH
Q 004103 128 AP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTI 201 (773)
Q Consensus 128 ~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaH~lkn~--~s~~~~~l 201 (773)
.. ++.+..+.|............ ..++|+|+|++.+...... +...++++|||||||++... ...+...+
T Consensus 126 ~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~ 201 (242)
T 3fe2_A 126 CRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIV 201 (242)
T ss_dssp HHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHH
T ss_pred HhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHH
Confidence 53 466776666544333322211 3579999999999765432 22236789999999998543 33444455
Q ss_pred Hcc-ccceEEEecCCC
Q 004103 202 SGY-QIQRRLLLTGTP 216 (773)
Q Consensus 202 ~~~-~~~~rllLTgTP 216 (773)
..+ .....+++|||+
T Consensus 202 ~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 202 DQIRPDRQTLMWSATW 217 (242)
T ss_dssp TTSCSSCEEEEEESCC
T ss_pred HhCCccceEEEEEeec
Confidence 555 455679999996
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.51 E-value=4.2e-13 Score=154.89 Aligned_cols=131 Identities=20% Similarity=0.227 Sum_probs=84.9
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCc
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSI 131 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~ 131 (773)
|.++||+|.+.+..+.....++.++++..+||+|||+.++..+.. . .+++||++|+ .+..||..++.+. ..
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~--~----~~~~~~~~~t~~l~~q~~~~~~~l--~~ 76 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ--L----KKKVLIFTRTHSQLDSIYKNAKLL--GL 76 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH--H----TCEEEEEESCHHHHHHHHHHHGGG--TC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh--C----CCcEEEEcCCHHHHHHHHHHHHhc--CC
Confidence 568999999998877777778889999999999999876555432 1 3589999999 8889999999885 23
Q ss_pred eEEEecCChh---------HHH----------------------HHHHHH------------HhhcCCccEEEcCHHHHH
Q 004103 132 AAVVYDGRPD---------ERK----------------------AMREEF------------FSERGRFNVLITHYDLIM 168 (773)
Q Consensus 132 ~v~~~~g~~~---------~r~----------------------~~~~~~------------~~~~~~~~VvItTye~l~ 168 (773)
++.+..|... ... ...... .......+|||+||..+.
T Consensus 77 ~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~ 156 (540)
T 2vl7_A 77 KTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLF 156 (540)
T ss_dssp CEEEC---------------------------------------------------------CTTGGGCSEEEEETHHHH
T ss_pred cEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhc
Confidence 4444444221 000 000000 000134699999999998
Q ss_pred HhHHH--Hh-------hcCeeEEEEccccccC
Q 004103 169 RDRQY--LK-------KVQWIYMIVDEGHRLK 191 (773)
Q Consensus 169 ~~~~~--l~-------~~~~~~vIiDEaH~lk 191 (773)
.+... +. ..+..+|||||||++-
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 157 QKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp SHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 76432 22 2356799999999993
No 90
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.42 E-value=1.2e-11 Score=144.60 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=92.7
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-chHH---HHHHHHhhc
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA-VLPN---WINEFSTWA 128 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~s-ll~q---W~~E~~k~~ 128 (773)
|..++|-|+.|+.-++ .+. |....||+|||+++...+...... ...++||+|+. |..| |...+.+++
T Consensus 77 G~~Pt~VQ~~~ip~Ll----qG~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLH----EGK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp CCCCCHHHHHHHHHHH----TTS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHhhccccc----CCc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 5688999999998776 344 888999999999864444211111 23689999994 4444 666666666
Q ss_pred CCceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhH--HH-------Hhhc---CeeEEEEccccccCChhhH
Q 004103 129 PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QY-------LKKV---QWIYMIVDEGHRLKNHECA 196 (773)
Q Consensus 129 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~--~~-------l~~~---~~~~vIiDEaH~lkn~~s~ 196 (773)
++.+.++.|....... ... ...+|++.|+..+.-|. .. +... ...++||||+|++.-.
T Consensus 148 -GLsv~~i~Gg~~~~~r--~~a----y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD--- 217 (997)
T 2ipc_A 148 -GLSVGVIQHASTPAER--RKA----YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID--- 217 (997)
T ss_dssp -TCCEEECCTTCCHHHH--HHH----HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS---
T ss_pred -CCeEEEEeCCCCHHHH--HHH----cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh---
Confidence 5677666664432111 111 24799999999884221 11 1122 5789999999975321
Q ss_pred HHHHHHccccceEEEecCCCCCCCHHHHHHhh
Q 004103 197 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLL 228 (773)
Q Consensus 197 ~~~~l~~~~~~~rllLTgTP~~n~~~el~~lL 228 (773)
.+..-+++|| |.+.. ..+|..+
T Consensus 218 --------eartPLIISg-p~~~~-~~lY~~~ 239 (997)
T 2ipc_A 218 --------EARTPLIISG-PAEKA-TDLYYKM 239 (997)
T ss_dssp --------STTSCEEEEE-SCSSC-HHHHHHH
T ss_pred --------CCCCCeeeeC-CCccc-hHHHHHH
Confidence 1222389999 87766 4444433
No 91
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.37 E-value=6.2e-13 Score=141.92 Aligned_cols=155 Identities=13% Similarity=0.069 Sum_probs=104.9
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc---C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---P 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~---p 129 (773)
..|+|+|..++..++.. .+.+.|+..+||+|||+..+..+...+........+|||+|+ .|..|+...+.++. +
T Consensus 113 ~~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp CSCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 47899999999877731 137889999999999998654444333332333368999999 88888888877764 5
Q ss_pred CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHH---HhhcCeeEEEEccccccCC---hhhHHHHHHHc
Q 004103 130 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKN---HECALAKTISG 203 (773)
Q Consensus 130 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~---l~~~~~~~vIiDEaH~lkn---~~s~~~~~l~~ 203 (773)
.+.+..+.|....... .....+|+|+|++.+...... +....+.+|||||||++.. ........+..
T Consensus 191 ~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~ 263 (300)
T 3fmo_B 191 ELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 263 (300)
T ss_dssp TCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTT
T ss_pred CcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHh
Confidence 6777776664432111 125678999999999765422 2223678999999999753 22233333344
Q ss_pred c-ccceEEEecCCCC
Q 004103 204 Y-QIQRRLLLTGTPI 217 (773)
Q Consensus 204 ~-~~~~rllLTgTP~ 217 (773)
+ .....+++|||+-
T Consensus 264 ~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 264 LPRNCQMLLFSATFE 278 (300)
T ss_dssp SCTTCEEEEEESCCC
T ss_pred CCCCCEEEEEeccCC
Confidence 4 3456799999974
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.06 E-value=8.9e-09 Score=120.32 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=62.0
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc--CCc
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--PSI 131 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~--p~~ 131 (773)
++||+|.+.+..+.....++.++++..+||+|||+..+..+....... ..+++|++|+ .+..|+.+++.++. ..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 689999999988887777889999999999999999876554443322 3489999999 88888999987764 245
Q ss_pred eEEEecC
Q 004103 132 AAVVYDG 138 (773)
Q Consensus 132 ~v~~~~g 138 (773)
+++++.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 5555544
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.94 E-value=2.8e-09 Score=123.24 Aligned_cols=133 Identities=17% Similarity=0.218 Sum_probs=94.7
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC--C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 130 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p--~ 130 (773)
.++||+|.+.+..+.....++.++++..+||+|||+..+..+.. ...++||++|+ .+..|+.+++.++.. .
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 47999999999888777778888999999999999987655544 23589999999 788899999988742 5
Q ss_pred ceEEEecCChhH--------------------------------HHHHHHHH---------------HhhcCCccEEEcC
Q 004103 131 IAAVVYDGRPDE--------------------------------RKAMREEF---------------FSERGRFNVLITH 163 (773)
Q Consensus 131 ~~v~~~~g~~~~--------------------------------r~~~~~~~---------------~~~~~~~~VvItT 163 (773)
+++.++.|...- ...+.... .......+|||+|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 667776663210 00111000 0112467999999
Q ss_pred HHHHHHhHHHHh---hcCeeEEEEccccccCC
Q 004103 164 YDLIMRDRQYLK---KVQWIYMIVDEGHRLKN 192 (773)
Q Consensus 164 ye~l~~~~~~l~---~~~~~~vIiDEaH~lkn 192 (773)
|..+..+..... .....+|||||||++-+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 999988642211 12567899999999965
No 94
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.92 E-value=4.2e-09 Score=107.90 Aligned_cols=149 Identities=18% Similarity=0.166 Sum_probs=92.2
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--CCCEEEEeCC-cchHHHHHHHHhhcCC-
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV--TGPHVIVAPK-AVLPNWINEFSTWAPS- 130 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~--~gp~LIVvP~-sll~qW~~E~~k~~p~- 130 (773)
.++++|.+++..+. ++...++..++|+|||.+...++.......+. ...+|+++|. .+..|..+.+...+..
T Consensus 61 p~~~~q~~~i~~i~----~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAIS----QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHH----HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHh----cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 58899999998887 47778999999999997655444433322222 2367888898 5556666777655421
Q ss_pred --ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEcccccc-CChhh---HHHHHHHcc
Q 004103 131 --IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRL-KNHEC---ALAKTISGY 204 (773)
Q Consensus 131 --~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~l-kn~~s---~~~~~l~~~ 204 (773)
..+. +.-.... .......+|+|+|++.+...... ...++++|||||||++ -..+. .+...+...
T Consensus 137 ~~~~~g-~~~~~~~--------~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 137 PGKSCG-YSVRFES--------ILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY 206 (235)
T ss_dssp TTSSEE-EEETTEE--------ECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred cCceEE-Eeechhh--------ccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC
Confidence 1111 1100000 00014578999999988776433 2346889999999984 22221 122222333
Q ss_pred ccceEEEecCCCC
Q 004103 205 QIQRRLLLTGTPI 217 (773)
Q Consensus 205 ~~~~rllLTgTP~ 217 (773)
+....+++|||+-
T Consensus 207 ~~~~~il~SAT~~ 219 (235)
T 3llm_A 207 PEVRIVLMSATID 219 (235)
T ss_dssp TTSEEEEEECSSC
T ss_pred CCCeEEEEecCCC
Confidence 5567899999974
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.83 E-value=4.5e-05 Score=89.64 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=55.4
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA 128 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~ 128 (773)
...|-+.|.+||..++. ...-.|+..++|+|||.+.+.++.++...+ .++||++|+ ..+++..+.+....
T Consensus 187 ~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~---~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQG---LKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp STTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEcCchHHHHHHHHHHHhcC
Confidence 45799999999998874 233468899999999999999999888753 489999999 55677776666543
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.63 E-value=0.00027 Score=82.57 Aligned_cols=151 Identities=18% Similarity=0.236 Sum_probs=92.4
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~ 132 (773)
..|.+.|.+++..++. +...++..++|+|||.++..++.++... ...++||++|+ ..+.+-...+.+.. ..
T Consensus 179 ~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~~--~~ 250 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG--LK 250 (624)
T ss_dssp CCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred CCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhcC--Ce
Confidence 3689999999988773 4456888999999999988888877642 34589999999 44556666665432 22
Q ss_pred EEEecCChh-----------------------------------------HHHHHH---HH-HHhhcCCccEEEcCHHHH
Q 004103 133 AVVYDGRPD-----------------------------------------ERKAMR---EE-FFSERGRFNVLITHYDLI 167 (773)
Q Consensus 133 v~~~~g~~~-----------------------------------------~r~~~~---~~-~~~~~~~~~VvItTye~l 167 (773)
++-+.+... ...... .. ........+||++|...+
T Consensus 251 ~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 251 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp EEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred EEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 221111000 000000 00 000113567888876554
Q ss_pred HHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccceEEEecCCCCC
Q 004103 168 MRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 218 (773)
Q Consensus 168 ~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllLTgTP~~ 218 (773)
.. ..+....|++||||||.....+.. .+..+....+++|-|=|.|
T Consensus 331 ~~--~~l~~~~fd~viIDEAsQ~~e~~~----li~l~~~~~~~ilvGD~~Q 375 (624)
T 2gk6_A 331 GD--PRLAKMQFRSILIDESTQATEPEC----MVPVVLGAKQLILVGDHCQ 375 (624)
T ss_dssp GC--GGGTTCCCSEEEETTGGGSCHHHH----HHHHTTTBSEEEEEECTTS
T ss_pred cc--hhhhcCCCCEEEEecccccCcHHH----HHHHHhcCCeEEEecChhc
Confidence 32 235567899999999977654431 1222233568999998876
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.48 E-value=0.00035 Score=78.52 Aligned_cols=142 Identities=13% Similarity=0.066 Sum_probs=82.2
Q ss_pred CCchHHHHHHHHHHHHhhcCCC-CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNL-NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~-~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~ 132 (773)
..|.+-|.+++..++.....+. ..++..+.|+|||.++.+++.++...+. ..+++++|+.....-..+.. +..
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa~~l~~~~----~~~ 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAKKILSKLS----GKE 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHHHHHHHHH----SSC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHHHHHHhhh----ccc
Confidence 4799999999998876544444 5688899999999999888888887532 47899999865443222211 111
Q ss_pred EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccceEEEe
Q 004103 133 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLL 212 (773)
Q Consensus 133 v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllL 212 (773)
+..++. +.............+.... .-....+++|||||+|.+.. ..+...+..+....++++
T Consensus 98 ~~T~h~-------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~iiiDE~~~~~~--~~~~~l~~~~~~~~~~~~ 160 (459)
T 3upu_A 98 ASTIHS-------ILKINPVTYEENVLFEQKE--------VPDLAKCRVLICDEVSMYDR--KLFKILLSTIPPWCTIIG 160 (459)
T ss_dssp EEEHHH-------HHTEEEEECSSCEEEEECS--------CCCCSSCSEEEESCGGGCCH--HHHHHHHHHSCTTCEEEE
T ss_pred hhhHHH-------HhccCcccccccchhcccc--------cccccCCCEEEEECchhCCH--HHHHHHHHhccCCCEEEE
Confidence 111110 0000000000000110000 00113578999999998732 233333355556778999
Q ss_pred cCCCCC
Q 004103 213 TGTPIQ 218 (773)
Q Consensus 213 TgTP~~ 218 (773)
.|-|-|
T Consensus 161 vGD~~Q 166 (459)
T 3upu_A 161 IGDNKQ 166 (459)
T ss_dssp EECTTS
T ss_pred ECCHHH
Confidence 998876
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00037 Score=83.49 Aligned_cols=150 Identities=14% Similarity=0.192 Sum_probs=91.7
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~ 132 (773)
..|.+.|.+++..++. +.-.++..+.|+|||.++..++.++.... ..++||++|+ ..+.+-...+.+.. ..
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~~--~~~ILv~a~tn~A~d~l~~rL~~~g--~~ 430 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKIH--KDRILVCAPSNVAVDHLAAKLRDLG--LK 430 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSHHHHHHHHHHHHHTT--CC
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhCC--CCeEEEEcCcHHHHHHHHHHHHhhC--cc
Confidence 4689999999988763 34468889999999999888888877632 3589999999 44566666666542 22
Q ss_pred EEEecCCh----------------------------------------hHHHHHHHH----HHhhcCCccEEEcCHHHHH
Q 004103 133 AVVYDGRP----------------------------------------DERKAMREE----FFSERGRFNVLITHYDLIM 168 (773)
Q Consensus 133 v~~~~g~~----------------------------------------~~r~~~~~~----~~~~~~~~~VvItTye~l~ 168 (773)
++-+.... .....+... ........+|+++|...+.
T Consensus 431 ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 510 (802)
T 2xzl_A 431 VVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAG 510 (802)
T ss_dssp EEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGG
T ss_pred EEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcC
Confidence 22111100 000000000 0011134578887766543
Q ss_pred HhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccceEEEecCCCCC
Q 004103 169 RDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 218 (773)
Q Consensus 169 ~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllLTgTP~~ 218 (773)
. ..+.. .|++||||||..+..+. . .+..+....+++|-|=|.|
T Consensus 511 ~--~~L~~-~fd~viIDEA~q~~e~~-~---li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 511 D--KRLDT-KFRTVLIDESTQASEPE-C---LIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp C--TTCCS-CCSEEEETTGGGSCHHH-H---HHHHTTTBSEEEEEECTTS
T ss_pred h--HHHhc-cCCEEEEECccccchHH-H---HHHHHhCCCEEEEEeCccc
Confidence 2 22334 89999999998875432 1 2222334568899998876
No 99
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.40 E-value=0.0042 Score=72.65 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCC-cchHHHHHHHHhh
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPK-AVLPNWINEFSTW 127 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~-~~gp~LIVvP~-sll~qW~~E~~k~ 127 (773)
.|.+.|.++|. ......++-...|+|||.+.+.-++++....+ ....+|+|+++ ....+..+.+.+.
T Consensus 9 ~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 9 SLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 68999999995 12444577778999999999999999988643 33579999998 4445556656554
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.36 E-value=0.00066 Score=81.27 Aligned_cols=151 Identities=17% Similarity=0.202 Sum_probs=91.2
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-chHHHHHHHHhhcCCce
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA-VLPNWINEFSTWAPSIA 132 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~s-ll~qW~~E~~k~~p~~~ 132 (773)
..|.+.|.+++..++. +.-.++..+.|+|||.++..++.++... ...++||++|+. .+.+-.+.+.+.. +.
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~g--~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG--LK 426 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHhC--cc
Confidence 4689999999988773 4446889999999999988888877653 345899999994 4455555555432 22
Q ss_pred EEEecCChh-----------------------HHHHHH---------------------HHH-HhhcCCccEEEcCHHHH
Q 004103 133 AVVYDGRPD-----------------------ERKAMR---------------------EEF-FSERGRFNVLITHYDLI 167 (773)
Q Consensus 133 v~~~~g~~~-----------------------~r~~~~---------------------~~~-~~~~~~~~VvItTye~l 167 (773)
++-+..... ....+. ... .......+||++|...+
T Consensus 427 vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~ 506 (800)
T 2wjy_A 427 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 506 (800)
T ss_dssp EEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGG
T ss_pred eEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhh
Confidence 221111000 000000 000 00012456777776554
Q ss_pred HHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccceEEEecCCCCC
Q 004103 168 MRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 218 (773)
Q Consensus 168 ~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllLTgTP~~ 218 (773)
.. ..+....|++||||||..+..+. ..+..+....+++|-|=|.|
T Consensus 507 ~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 551 (800)
T 2wjy_A 507 GD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 551 (800)
T ss_dssp GC--TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred CC--hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEeccccc
Confidence 32 23455689999999997765432 12222334568999998876
No 101
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.32 E-value=0.00046 Score=79.68 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=83.3
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCce
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 132 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~ 132 (773)
+..|.+.|.+++..++ .+...++..+.|+|||.++.+++..+... ..++++++|+........+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHHhHhhhc----cc
Confidence 5679999999998877 35667889999999999887777766653 3588999999666555443211 00
Q ss_pred EEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccceEEEe
Q 004103 133 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLL 212 (773)
Q Consensus 133 v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllL 212 (773)
...++ .+..... . .+.. ..-....+++|||||+|.+.. ..+...+..+....+++|
T Consensus 256 a~Tih-----------~ll~~~~--~-------~~~~--~~~~~~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~~lil 311 (574)
T 3e1s_A 256 ASTVH-----------RLLGYGP--Q-------GFRH--NHLEPAPYDLLIVDEVSMMGD--ALMLSLLAAVPPGARVLL 311 (574)
T ss_dssp EEEHH-----------HHTTEET--T-------EESC--SSSSCCSCSEEEECCGGGCCH--HHHHHHHTTSCTTCEEEE
T ss_pred HHHHH-----------HHHcCCc--c-------hhhh--hhcccccCCEEEEcCccCCCH--HHHHHHHHhCcCCCEEEE
Confidence 00000 0000000 0 0000 001123689999999999842 234444566777889999
Q ss_pred cCCCCCC
Q 004103 213 TGTPIQN 219 (773)
Q Consensus 213 TgTP~~n 219 (773)
.|-|-|.
T Consensus 312 vGD~~QL 318 (574)
T 3e1s_A 312 VGDTDQL 318 (574)
T ss_dssp EECTTSC
T ss_pred Eeccccc
Confidence 9999773
No 102
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.21 E-value=0.00094 Score=77.70 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc-CCCCCEEEEeCCcch-HHHHHHHHhhcCCceE-
Q 004103 57 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPKAVL-PNWINEFSTWAPSIAA- 133 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~-~~~gp~LIVvP~sll-~qW~~E~~k~~p~~~v- 133 (773)
-+.|..++..++ .+...++..++|+|||.++..++..+.... ....++++++|+... .+..+.+..+...+.+
T Consensus 151 ~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 578999998776 456678999999999988777777766532 223478999999444 4444444432211000
Q ss_pred -EEecCChhHHHHHHHHHHhhcCCcc-EEEcCHHH--HHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccceE
Q 004103 134 -VVYDGRPDERKAMREEFFSERGRFN-VLITHYDL--IMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRR 209 (773)
Q Consensus 134 -~~~~g~~~~r~~~~~~~~~~~~~~~-VvItTye~--l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~r 209 (773)
....+.+.. ....+ ++-.+... +... .....++++||||||+.+. ...+...+..++...+
T Consensus 227 ~~~~~~~~~~-----------~~Tih~ll~~~~~~~~~~~~--~~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~ 291 (608)
T 1w36_D 227 DEQKKRIPED-----------ASTLHRLLGAQPGSQRLRHH--AGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHAR 291 (608)
T ss_dssp SCCCCSCSCC-----------CBTTTSCC-----------C--TTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCE
T ss_pred HHHHhccchh-----------hhhhHhhhccCCCchHHHhc--cCCCCCCCEEEEechhhCC--HHHHHHHHHhCCCCCE
Confidence 000000000 00000 11011110 0000 0112368899999999664 2334555677788889
Q ss_pred EEecCCCCCCCH
Q 004103 210 LLLTGTPIQNSL 221 (773)
Q Consensus 210 llLTgTP~~n~~ 221 (773)
++|.|-|-|-.+
T Consensus 292 liLvGD~~QL~~ 303 (608)
T 1w36_D 292 VIFLGDRDQLAS 303 (608)
T ss_dssp EEEEECTTSGGG
T ss_pred EEEEcchhhcCC
Confidence 999998876543
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.60 E-value=0.032 Score=60.72 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=87.9
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc---C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---P 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~---p 129 (773)
..|.|||...+..+.. ....++.-.-+.|||..+.+++.+.... .....+++++|+ .....+...+..++ |
T Consensus 162 ~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 4899999998876631 2336777889999999887777765543 233478899998 34444445555443 3
Q ss_pred C-ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHH-ccc--
Q 004103 130 S-IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTIS-GYQ-- 205 (773)
Q Consensus 130 ~-~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~-~~~-- 205 (773)
. +...+...+... ..+.. +..-.++++ +...+.....+++|+||+|.+++. ..+..++. .+.
T Consensus 237 ~ll~~~~~~~~~~~------I~f~n-Gs~i~~lsa------~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ls~~ 302 (385)
T 2o0j_A 237 DFLQPGIVEWNKGS------IELDN-GSSIGAYAS------SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVISSG 302 (385)
T ss_dssp TTTSCCEEEECSSE------EEETT-SCEEEEEEC------SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHHST
T ss_pred HhhhhhhccCCccE------EEeCC-CCEEEEEEC------CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHHhhcC
Confidence 2 110000000000 00000 111122222 345667788999999999999863 23333442 222
Q ss_pred cceEEEecCCCCCCCHHHHHHhh
Q 004103 206 IQRRLLLTGTPIQNSLQELWSLL 228 (773)
Q Consensus 206 ~~~rllLTgTP~~n~~~el~~lL 228 (773)
...++++++||-..+ -++.+.
T Consensus 303 ~~~kiiiiSTP~g~n--~fy~l~ 323 (385)
T 2o0j_A 303 RRSKIIITTTPNGLN--HFYDIW 323 (385)
T ss_dssp TCCEEEEEECCCSSS--HHHHHH
T ss_pred CCCcEEEEeCCCCch--hHHHHH
Confidence 357888889986543 444443
No 104
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.52 E-value=0.098 Score=61.40 Aligned_cols=68 Identities=16% Similarity=0.080 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCC-cchHHHHHHHHhhc
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPK-AVLPNWINEFSTWA 128 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~-~~gp~LIVvP~-sll~qW~~E~~k~~ 128 (773)
.|.|.|.++|.. .....++....|+|||.+.+.-+.+++...+ ....+|+|+.+ .......+.+.+..
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 578999999863 2344577789999999999998999887643 34578999987 44455666666543
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.18 E-value=0.0084 Score=58.42 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=26.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 114 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~ 114 (773)
.++..+||+|||..++.++..+...+ .+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeec
Confidence 36788999999998888777665532 367888876
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.10 E-value=0.0046 Score=68.33 Aligned_cols=108 Identities=13% Similarity=0.061 Sum_probs=68.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcC
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERG 155 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~ 155 (773)
.++....|+|||.....++. ..+.||++|+ .+...|.+.+.+... . .
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~~----------~--------------~ 211 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANASGI----------I--------------V 211 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTTSC----------C--------------C
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhcCc----------c--------------c
Confidence 36788999999976655442 1477999999 777779888754310 0 1
Q ss_pred CccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHccccceEEEecCCCCCC
Q 004103 156 RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQN 219 (773)
Q Consensus 156 ~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~~~~~rllLTgTP~~n 219 (773)
.-..-+.|++.+...........+++|||||+..+- ...+...+...+. .+++|.|=|-|-
T Consensus 212 ~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 212 ATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp CCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred cccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCcccc
Confidence 112346788876554322222348999999998662 2233333344444 889999988653
No 107
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.97 E-value=0.15 Score=60.41 Aligned_cols=67 Identities=18% Similarity=0.126 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCCc-chHHHHHHHHhh
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKA-VLPNWINEFSTW 127 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~-~~gp~LIVvP~s-ll~qW~~E~~k~ 127 (773)
.|.|.|.++|.. .....++....|+|||.+.+.-+++++...+ ....+|+|+.+. ......+.+.+.
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 688999999863 2345567778999999999999999998543 345789999874 333344444443
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.88 E-value=0.029 Score=56.40 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=27.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 114 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~ 114 (773)
.++..+||+|||..++.++..+...+ .+++++.|.
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~ 49 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPK 49 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEec
Confidence 36789999999999988887776542 367888775
No 109
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.78 E-value=0.042 Score=63.51 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=85.6
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhc---C
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---P 129 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~---p 129 (773)
..|.|||...+..+. .....++.-.-|.|||..+.+++.+..... ....++++.|+ .........+..++ |
T Consensus 162 ~~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred CcCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 579999998887652 234467778899999998776766665543 23478999998 55545555665554 3
Q ss_pred C-ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHc-cc--
Q 004103 130 S-IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-YQ-- 205 (773)
Q Consensus 130 ~-~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~-~~-- 205 (773)
. +.......+... + .+. .+..+.+.+ .+...+.....+++|+||+|.+++.. .+..++.. +.
T Consensus 237 ~~~~~~~~~~~~~~---i---~~~--nGs~i~~~s-----~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~ 302 (592)
T 3cpe_A 237 DFLQPGIVEWNKGS---I---ELD--NGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSG 302 (592)
T ss_dssp TTTSCCEEEECSSE---E---EET--TSCEEEEEE-----CCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSS
T ss_pred HhhccccccCCccE---E---Eec--CCCEEEEEe-----CCCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhccC
Confidence 1 110000000000 0 000 111122221 23445666788999999999997742 44444432 22
Q ss_pred cceEEEecCCCCCC
Q 004103 206 IQRRLLLTGTPIQN 219 (773)
Q Consensus 206 ~~~rllLTgTP~~n 219 (773)
...++++++||-..
T Consensus 303 ~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 303 RRSKIIITTTPNGL 316 (592)
T ss_dssp SCCEEEEEECCCTT
T ss_pred CCceEEEEeCCCCc
Confidence 34788899999544
No 110
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.33 E-value=0.037 Score=57.92 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=27.7
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCC-CCCEEEEeCCc
Q 004103 76 NGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPKA 115 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~~~~~~-~gp~LIVvP~s 115 (773)
+.+|..++|+|||..+-+++..+...... .++++.+.+..
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 46889999999999998888777654322 23555555433
No 111
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.94 E-value=0.098 Score=55.20 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=28.1
Q ss_pred CeeEEEEccccccC-C-hhhHHHHHHHccccceEEEecCCCCC
Q 004103 178 QWIYMIVDEGHRLK-N-HECALAKTISGYQIQRRLLLTGTPIQ 218 (773)
Q Consensus 178 ~~~~vIiDEaH~lk-n-~~s~~~~~l~~~~~~~rllLTgTP~~ 218 (773)
...+|||||+|.+. . ....+...+.......++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 57899999999995 2 23344555555556677888777654
No 112
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.94 E-value=0.13 Score=54.76 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHHhhcCCC--C-eEEecCCCCCHHHHHHHHHHHHHH
Q 004103 56 LRAYQLEGLQWMLSLFNNNL--N-GILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~~~~~~--~-gILademGlGKTi~aiali~~l~~ 100 (773)
++|+|.+.+..+.....++. + .++..+.|+|||..+.+++..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 57899999888877765543 2 477899999999999988887754
No 113
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.84 E-value=0.095 Score=51.22 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=26.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 114 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~ 114 (773)
++..+||+|||..++.++..+... ..+++|+.|.
T Consensus 12 v~~G~mgsGKTT~ll~~a~r~~~~---g~kV~v~k~~ 45 (191)
T 1xx6_A 12 VIVGPMYSGKSEELIRRIRRAKIA---KQKIQVFKPE 45 (191)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEec
Confidence 668899999999888887766543 2478888886
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.79 E-value=0.28 Score=51.70 Aligned_cols=36 Identities=14% Similarity=-0.068 Sum_probs=26.0
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 113 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP 113 (773)
.+.+|..++|+|||..+-+++..+... ..+++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEH
Confidence 456889999999999888887776654 235555543
No 115
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.78 E-value=0.076 Score=52.77 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=26.6
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 114 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~ 114 (773)
++..+||+|||..++..+..+... ..++||+.|.
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~ 65 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPC 65 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEec
Confidence 468999999999888887766554 3478888885
No 116
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.73 E-value=0.42 Score=46.35 Aligned_cols=42 Identities=24% Similarity=0.212 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHH
Q 004103 57 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~ 99 (773)
+...+..+...+... ...+.+|..+.|+|||..+-+++..+.
T Consensus 22 ~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 22 QDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CHHHHHHHHHHHHTT-CCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 444555554444322 123478899999999988877776654
No 117
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.60 E-value=0.16 Score=51.02 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=25.3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 114 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~ 114 (773)
+...+||+|||..+|..+..... ...+++|+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~---~g~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHT---TTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEeec
Confidence 66889999999888777655543 34578888885
No 118
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.06 E-value=1.1 Score=47.19 Aligned_cols=45 Identities=7% Similarity=-0.029 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHH-hh--cCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 57 RAYQLEGLQWMLS-LF--NNNLNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 57 rpyQ~~gv~~l~~-~~--~~~~~gILademGlGKTi~aiali~~l~~~ 101 (773)
|+-|...+...+. .. ..+.+.+|..++|+|||.++-+++..+...
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4556666653333 22 233345789999999999998888888664
No 119
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.95 E-value=0.38 Score=45.40 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=21.0
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~ 100 (773)
..+.+|..+.|+|||..+-+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 344688999999999988877776644
No 120
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.93 E-value=0.48 Score=44.67 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 57 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~ 100 (773)
+..++..+...+.. ..+.+.+|..+.|+|||..+-+++..+..
T Consensus 27 ~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 27 RDEEIRRTIQVLQR-RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CHHHHHHHHHHHTS-SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhc-CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444333321 22345688999999999988888776654
No 121
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.90 E-value=0.34 Score=47.65 Aligned_cols=44 Identities=25% Similarity=0.078 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHH
Q 004103 56 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~ 99 (773)
-++..++.+...+..-..+...+|..+.|+|||..+-+++..+.
T Consensus 27 g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 27 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35556666655554322223457899999999988777665553
No 122
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.37 E-value=0.84 Score=47.53 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHH
Q 004103 57 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~ 99 (773)
++..+..+..++..- ...+.++..+.|+|||..+-+++..+.
T Consensus 30 ~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTG-SMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CHHHHHHHHHHHHHT-CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 455555555444321 112468899999999998877776654
No 123
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.20 E-value=0.19 Score=49.92 Aligned_cols=28 Identities=21% Similarity=-0.099 Sum_probs=22.0
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~ 101 (773)
+.+.+|..+.|+|||..+-+++..+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4556889999999999888777766553
No 124
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.20 E-value=1.3 Score=42.09 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHhh-----cCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 57 RAYQLEGLQWMLSLF-----NNNLNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~-----~~~~~gILademGlGKTi~aiali~~l~~~ 101 (773)
.+.|.+++..+.... ..+.+.+|..+.|+|||..+-+++..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~ 65 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK 65 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457888887776543 234456788999999999988877776533
No 125
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.15 E-value=0.38 Score=50.95 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=26.2
Q ss_pred CeeEEEEccccccCC-hhhHHHHHHHccccceEEEecCCCC
Q 004103 178 QWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGTPI 217 (773)
Q Consensus 178 ~~~~vIiDEaH~lkn-~~s~~~~~l~~~~~~~rllLTgTP~ 217 (773)
.+.+|||||+|.+.. ....+.+.+.......++++++++.
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence 567999999999853 2334555555555556666666543
No 126
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.05 E-value=0.17 Score=52.07 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=24.7
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 115 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~s 115 (773)
.+.+.+|..+.|+|||..+-+++..+ ..+++.+....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~~~ 86 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET------NATFIRVVGSE 86 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEGGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehHH
Confidence 44556889999999998887765543 23555554433
No 127
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.02 E-value=0.12 Score=47.78 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=20.2
Q ss_pred hcCCCCeEEecCCCCCHHHHHHHHHH
Q 004103 71 FNNNLNGILADEMGLGKTIQTIALIA 96 (773)
Q Consensus 71 ~~~~~~gILademGlGKTi~aiali~ 96 (773)
...+.+.+|..++|+|||..|-++..
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHH
Confidence 34667789999999999988765543
No 128
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.99 E-value=0.36 Score=50.30 Aligned_cols=42 Identities=26% Similarity=0.207 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHH
Q 004103 57 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~ 99 (773)
++..+..+..++..- ...+.++..+.|+|||..+-+++..+.
T Consensus 26 ~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 26 NKETIDRLQQIAKDG-NMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CTHHHHHHHHHHHSC-CCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 344444454444321 122378899999999988877777654
No 129
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.81 E-value=0.35 Score=52.72 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=32.8
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINE 123 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E 123 (773)
+.|.+|..++|+|||+.|=|++..+ ..+++.|....++..|..|
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGGSCSSTTH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHhhccccch
Confidence 4566889999999999988887654 2377777777777666433
No 130
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.68 E-value=0.33 Score=51.01 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhcCCC--CeEEecCCCCCHHHHHHHHHHH
Q 004103 61 LEGLQWMLSLFNNNL--NGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 61 ~~gv~~l~~~~~~~~--~gILademGlGKTi~aiali~~ 97 (773)
.+.+..+.....++. .-++..+.|+|||..+.+++..
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 344444444333333 3588999999999888777653
No 131
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.57 E-value=0.46 Score=50.80 Aligned_cols=44 Identities=25% Similarity=0.223 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHhh---cCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 57 RAYQLEGLQWMLSLF---NNNLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~---~~~~~gILademGlGKTi~aiali~~l~~ 100 (773)
++.+++.+...+... ..+.+.+|..+.|+|||..+-+++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455655554444332 33445688999999999988777766644
No 132
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.50 E-value=0.39 Score=51.50 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhh-cC--CCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 57 RAYQLEGLQWMLSLF-NN--NLNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~-~~--~~~gILademGlGKTi~aiali~~l~~~ 101 (773)
+..+++.+..++... .. +...+|..+.|+|||..+-+++..+...
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 556666665444332 22 3346789999999999988777766543
No 133
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.23 E-value=0.27 Score=51.91 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=18.6
Q ss_pred CeEEecCCCCCHHHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l 98 (773)
+.+|..++|+|||..+-+++..+
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 45889999999999887776653
No 134
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.09 E-value=0.72 Score=46.49 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=24.8
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 116 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sl 116 (773)
.+.+|..++|+|||..+-+++..+ ..+++.+....+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~ 75 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEF 75 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHH
Confidence 345789999999998887776644 236666655443
No 135
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.02 E-value=0.37 Score=47.07 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=25.3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 114 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~ 114 (773)
++..+||+|||...+-.+..+...+ .+++++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 6789999999977766666555542 478888885
No 136
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.91 E-value=0.88 Score=50.31 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=21.7
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~ 101 (773)
.+.+|..+.|+|||..+-+++..+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~ 157 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 456889999999999888777776554
No 137
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.58 E-value=0.57 Score=49.96 Aligned_cols=43 Identities=26% Similarity=0.114 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHH
Q 004103 57 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~ 99 (773)
++..+..+...+..-.-+...++..+.|+|||..+-+++..+.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4555555555544222122247899999999988877766553
No 138
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.23 E-value=1.1 Score=47.41 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=25.9
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcch
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 117 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll 117 (773)
.+.+|..++|+|||..+-+++..+ ...+++.|....++
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~-----~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLV 83 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT-----TSCEEEEEECCSSC
T ss_pred ceEEEECCCCccHHHHHHHHHHHc-----CCCcEEEEEhHHHH
Confidence 345789999999999887777654 12355555555444
No 139
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=91.08 E-value=1.2 Score=50.77 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=55.7
Q ss_pred HHHHHHHHh-hhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcC-CCCHHHHHHHHHhhcCCCCCcEEEEEec--ccc
Q 004103 369 LLDRLLPKL-RKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDG-STKTEERGTLLKQFNAPDSPYFMFLLST--RAG 444 (773)
Q Consensus 369 ~L~~ll~~l-~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G-~~~~~eR~~~i~~Fn~~~~~~~v~LlSt--~ag 444 (773)
.+.+.+..+ ...+.++|||+.+...++.+.+ ..+.++. +.| +++ +.++++.|+..+.. +|+++ ...
T Consensus 380 ~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~v~-~q~~~~~---~~~~~~~~~~~~~~---vl~~v~gg~~ 449 (551)
T 3crv_A 380 RYADYLLKIYFQAKANVLVVFPSYEIMDRVMS---RISLPKY-VESEDSS---VEDLYSAISANNKV---LIGSVGKGKL 449 (551)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESCHHHHHHHHT---TCCSSEE-ECCSSCC---HHHHHHHTTSSSSC---EEEEESSCCS
T ss_pred HHHHHHHHHHHhCCCCEEEEecCHHHHHHHHH---hcCCcEE-EcCCCCC---HHHHHHHHHhcCCe---EEEEEeccee
Confidence 344444433 3456689999999888888876 2344443 344 334 45678888633322 56665 689
Q ss_pred cccCCcc---c--CCeeEEeCCCC
Q 004103 445 GLGLNLQ---T--ADTVIIFDSDW 463 (773)
Q Consensus 445 g~GLNL~---~--ad~VI~~D~~w 463 (773)
.+|||++ + +..||+.-.|+
T Consensus 450 ~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 450 AEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CCSSCCEETTEESEEEEEEESCCC
T ss_pred cccccccccCCcceeEEEEEcCCC
Confidence 9999999 3 78899887665
No 140
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.08 E-value=2.3 Score=45.38 Aligned_cols=42 Identities=26% Similarity=0.319 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhh---cCCC--CeEEecCCCCCHHHHHHHHHHHH
Q 004103 57 RAYQLEGLQWMLSLF---NNNL--NGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~---~~~~--~gILademGlGKTi~aiali~~l 98 (773)
++.+++.+...+... ..+. ..+|..+.|+|||..+-+++..+
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 455555554444332 1223 46889999999998876666554
No 141
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.97 E-value=0.79 Score=49.13 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=19.8
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l 98 (773)
.+.+|..++|+|||..|-+++..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 356889999999999988777665
No 142
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.88 E-value=0.62 Score=50.53 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=25.6
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 120 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW 120 (773)
.+.+|..+.|+|||..+-+++..+ ..+++.|.+..+...|
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTSKY 188 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC----
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhccc
Confidence 456889999999998887765432 3466666665555443
No 143
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.76 E-value=0.13 Score=47.33 Aligned_cols=24 Identities=13% Similarity=-0.038 Sum_probs=18.5
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHH
Q 004103 72 NNNLNGILADEMGLGKTIQTIALI 95 (773)
Q Consensus 72 ~~~~~gILademGlGKTi~aiali 95 (773)
..+.+.+|..++|+|||..|-++.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCCcEEEECCCCccHHHHHHHHH
Confidence 456678899999999997765443
No 144
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.53 E-value=0.59 Score=49.93 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHHHhhcCCC----CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 004103 56 LRAYQLEGLQWMLSLFNNNL----NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 113 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~~~~~~----~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP 113 (773)
-.+.+...+..+......+. +.+|..++|+|||..+-+++..+. ...|++.+..
T Consensus 48 G~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~~~~~~ 105 (368)
T 3uk6_A 48 GQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG----PDTPFTAIAG 105 (368)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC----SSCCEEEEEG
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc----ccCCcccccc
Confidence 35666666666665544433 458899999999999888877653 2236655543
No 145
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.34 E-value=0.52 Score=46.76 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=24.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 114 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~ 114 (773)
++..+||+|||...+-.+..+... ..+++|+.|.
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~---g~kvli~kp~ 65 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYA---KQKVVVFKPA 65 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCceEEEEec
Confidence 678899999998777776555443 2467888885
No 146
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.25 E-value=1.3 Score=45.72 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=20.2
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l 98 (773)
+.+.+|..++|+|||..+-+++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567889999999998887776655
No 147
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.64 E-value=3.3 Score=45.61 Aligned_cols=127 Identities=11% Similarity=0.020 Sum_probs=67.8
Q ss_pred HHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEE-EecC--C
Q 004103 63 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV-VYDG--R 139 (773)
Q Consensus 63 gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~-~~~g--~ 139 (773)
++..++.-+..+.-.+|+.++|+|||..++.++....... ..|++++..-....++...+.....++... +..| +
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~ 266 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLT 266 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCC
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCC
Confidence 4555663344444468999999999999988887766532 348888887655555554432211111100 0112 1
Q ss_pred hhHHHHHHHHHHhhcCCccEEEc-----CHHHHHHhHHH-HhhcCeeEEEEccccccCC
Q 004103 140 PDERKAMREEFFSERGRFNVLIT-----HYDLIMRDRQY-LKKVQWIYMIVDEGHRLKN 192 (773)
Q Consensus 140 ~~~r~~~~~~~~~~~~~~~VvIt-----Tye~l~~~~~~-l~~~~~~~vIiDEaH~lkn 192 (773)
..+...+...... .....+.|. +.+.+...... ....+.++||||..+.+..
T Consensus 267 ~~~~~~~~~a~~~-l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 267 DRDFSRLVDVASR-LSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHHHH-HHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHHHH-HhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCC
Confidence 2222222211100 012234442 44445443333 3345789999999998864
No 148
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.50 E-value=1.4 Score=46.65 Aligned_cols=42 Identities=21% Similarity=0.460 Sum_probs=27.0
Q ss_pred CeeEEEEccccccCCh-hhHHHHHHHccccceEEEecCCCCCC
Q 004103 178 QWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTPIQN 219 (773)
Q Consensus 178 ~~~~vIiDEaH~lkn~-~s~~~~~l~~~~~~~rllLTgTP~~n 219 (773)
++.++|+||+|.+... ...+.+.+..+....+++++++-...
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 6789999999996432 22455555555556667776664443
No 149
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=89.39 E-value=2.2 Score=50.64 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=67.8
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHH----HHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILE----IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 438 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~----~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~L 438 (773)
.|||-......+-.....|.+++|.+.....+.-+. .++...|+++..++|+++..+|...++...++..+ ++
T Consensus 399 GSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~---Iv 475 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID---VV 475 (780)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC---EE
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCC---EE
Confidence 355544333322222345789999999876655444 44445589999999999999999999999887766 55
Q ss_pred Eeccc-ccccCCcccCCeeEEeCCC
Q 004103 439 LSTRA-GGLGLNLQTADTVIIFDSD 462 (773)
Q Consensus 439 lSt~a-gg~GLNL~~ad~VI~~D~~ 462 (773)
++|.+ ....+++...+.||+=+.+
T Consensus 476 VgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEESCC
T ss_pred EECHHHHhhhhhccCCceEEecccc
Confidence 55554 4556788888888886655
No 150
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.29 E-value=0.91 Score=50.23 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=31.1
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 121 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~ 121 (773)
.+.+.+|..++|+|||+.|-+++..+- -+++.|....++..|.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~------~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD------ATFIRVIGSELVQKYV 284 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT------CEEEEEEGGGGCCCSS
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC------CCeEEEEhHHhhcccC
Confidence 344557889999999999888876542 2677777767666554
No 151
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.15 E-value=0.59 Score=48.67 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=25.0
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 116 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sl 116 (773)
.+.+|..++|+|||..+-+++..+ ..+++.|....+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l 72 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGEL 72 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHh
Confidence 345678999999999988887766 235565554333
No 152
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.09 E-value=1.2 Score=49.23 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=24.6
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 120 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW 120 (773)
.+.+|..++|+|||..+-+++..+ ...+++.|....++..|
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhh
Confidence 445789999999999887777654 12356666555555444
No 153
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.10 E-value=1.1 Score=47.57 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHhh---cCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 57 RAYQLEGLQWMLSLF---NNNLNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~---~~~~~gILademGlGKTi~aiali~~l~~~ 101 (773)
+..+++.+...+... ..+...+|..+.|+|||..+-.++..+...
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 556666554444322 223456889999999998887777666543
No 154
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.00 E-value=3.1 Score=43.83 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhcCCC--CeEEecCCCCCHHHHHHHHHHHHH
Q 004103 58 AYQLEGLQWMLSLFNNNL--NGILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 58 pyQ~~gv~~l~~~~~~~~--~gILademGlGKTi~aiali~~l~ 99 (773)
++.+..+...+. ++. +.++..+.|+|||..+-+++..+.
T Consensus 31 ~~~~~~L~~~i~---~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 31 NEVITTVRKFVD---EGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHHH---TTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 444445544443 332 268899999999999888877664
No 155
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.73 E-value=1.5 Score=45.30 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=23.8
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 76 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
..+|..++|+|||..|-+++..+.. ..++++.+-
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~---~~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFD---TEEAMIRID 82 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHS---CGGGEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcC---CCcceEEee
Confidence 4588999999999988777765533 234555553
No 156
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.63 E-value=1.1 Score=50.53 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=19.3
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l 98 (773)
...+|..+.|+|||..+-+++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 456889999999999887777654
No 157
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.23 E-value=0.77 Score=50.62 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=30.5
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 121 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~ 121 (773)
+.|.+|..++|+|||+.|-+++..+- .+++.|....++..|.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSPASGIVDKYI 256 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGTCCSSS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEehhhhccccc
Confidence 34557899999999999988876542 2677777666665553
No 158
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.19 E-value=1.8 Score=43.92 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=25.0
Q ss_pred hcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 71 FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 71 ~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
...+.+.+|..++|+|||..+-++...+. ....|++.|-
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~~~---~~~~~~~~v~ 64 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYLSS---RWQGPFISLN 64 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHTST---TTTSCEEEEE
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHhcC---ccCCCeEEEe
Confidence 34566778999999999987755554321 1224655553
No 159
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.09 E-value=1.1 Score=46.73 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=19.7
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l 98 (773)
.+.+.+|..++|+|||..+-+++..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 34456789999999998887766543
No 160
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.06 E-value=5.1 Score=44.23 Aligned_cols=125 Identities=13% Similarity=0.093 Sum_probs=66.5
Q ss_pred HHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHh-hc--CCceEEEecC-
Q 004103 63 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST-WA--PSIAAVVYDG- 138 (773)
Q Consensus 63 gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k-~~--p~~~v~~~~g- 138 (773)
++..++.-+..+.-.+|+.++|+|||..++.++..+.... ..+++++.......++...+.. .+ +...+ ..|
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l--~~g~ 267 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEMSAQQLVMRMLCAEGNINAQNL--RTGK 267 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSSCHHHHHHHHHHHHHTCCHHHH--HTSC
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCCHHHHHHHHHHHHcCCCHHHH--hcCC
Confidence 4555554344455568999999999999988887776532 2388888866444554443321 11 10000 112
Q ss_pred -ChhHHHHHHHHHHhhcCCccEEEc-----CHHHHHHhHHHH-hhcCeeEEEEccccccCC
Q 004103 139 -RPDERKAMREEFFSERGRFNVLIT-----HYDLIMRDRQYL-KKVQWIYMIVDEGHRLKN 192 (773)
Q Consensus 139 -~~~~r~~~~~~~~~~~~~~~VvIt-----Tye~l~~~~~~l-~~~~~~~vIiDEaH~lkn 192 (773)
...+...+..... ......+.+. +.+.+......+ ...+.++||||+.+.+..
T Consensus 268 l~~~~~~~~~~a~~-~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 268 LTPEDWGKLTMAMG-SLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp CCHHHHHHHHHHHH-HHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred CCHHHHHHHHHHHH-HHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 1122222111110 0012234432 455554433333 345789999999999863
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.04 E-value=0.39 Score=49.93 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=19.9
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~ 99 (773)
+.++..+.|+|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 468899999999998887777654
No 162
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=86.94 E-value=3.5 Score=44.55 Aligned_cols=81 Identities=22% Similarity=0.246 Sum_probs=58.7
Q ss_pred hcCCcEEEEeecHHHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccc---cCCccc
Q 004103 379 KSGHRVLLFSQMTRLMDILEIYLKL---NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL---GLNLQT 452 (773)
Q Consensus 379 ~~g~kvLIFsq~~~~ld~L~~~L~~---~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~---GLNL~~ 452 (773)
..+.++||.+.....+.-+.+.+.. .|+++..++|+++..++...++.+..++.+ |++.+....-. -+++..
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~--Iiv~Tp~~l~~~l~~~~~~~ 139 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH--ILVFSTQFVSKNREKLSQKR 139 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCS--EEEEEHHHHHHCHHHHTTCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCC--EEEECHHHHHHHHHHhcccc
Confidence 4577999999999888888887776 688999999999998888888888776555 44444433311 144556
Q ss_pred CCeeEEeCC
Q 004103 453 ADTVIIFDS 461 (773)
Q Consensus 453 ad~VI~~D~ 461 (773)
.+.||+=+.
T Consensus 140 ~~~iViDEa 148 (414)
T 3oiy_A 140 FDFVFVDDV 148 (414)
T ss_dssp CSEEEESCH
T ss_pred ccEEEEeCh
Confidence 777776443
No 163
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=86.89 E-value=0.97 Score=48.41 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=25.0
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 116 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sl 116 (773)
..+.+|..++|+|||..+-+++..+ ..+++.|....+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l 153 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSL 153 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHh
Confidence 4456789999999999887776543 235555554443
No 164
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.53 E-value=4 Score=43.35 Aligned_cols=127 Identities=14% Similarity=0.073 Sum_probs=67.6
Q ss_pred HHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEE-EecC--C
Q 004103 63 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV-VYDG--R 139 (773)
Q Consensus 63 gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~-~~~g--~ 139 (773)
.+..++.-+..+.-.+|+..+|.|||..++.++..+.. ..++++++..-....+....+......+... +..| +
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls 111 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLD 111 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCC
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCC
Confidence 45556543444444689999999999999888877765 2458898887655555444432211111000 0011 1
Q ss_pred hhHHHHHHHHHHhhcCCccEEEc-----CHHHHHHhHHHHh-hc-CeeEEEEccccccCCh
Q 004103 140 PDERKAMREEFFSERGRFNVLIT-----HYDLIMRDRQYLK-KV-QWIYMIVDEGHRLKNH 193 (773)
Q Consensus 140 ~~~r~~~~~~~~~~~~~~~VvIt-----Tye~l~~~~~~l~-~~-~~~~vIiDEaH~lkn~ 193 (773)
..+...+...... .....+.|. |.+.+......+. .. ..++||||-.+.+...
T Consensus 112 ~~e~~~l~~a~~~-l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~ 171 (338)
T 4a1f_A 112 DDQWENLAKCFDH-LSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGS 171 (338)
T ss_dssp HHHHHHHHHHHHH-HHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTH
T ss_pred HHHHHHHHHHHHH-HhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCC
Confidence 2222222111000 011223331 3445544444443 33 6899999999988653
No 165
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.35 E-value=0.86 Score=49.97 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=31.5
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 122 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~ 122 (773)
+.+.+|..++|+|||+.|-|++..+- .+++.|....++..|..
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v~~s~l~sk~vG 258 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIVGSELIQKYLG 258 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT------CEEEEEESGGGCCSSSS
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC------CCEEEEEHHHhhhccCc
Confidence 34557899999999999888876542 27777777777666643
No 166
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=86.20 E-value=2.9 Score=43.02 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=18.7
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~ 97 (773)
+.+.+|..+.|+|||..+-+++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345678999999999888776654
No 167
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=86.01 E-value=4.3 Score=44.68 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=23.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
+++...|+|||.++..++.++... ..++++|+
T Consensus 104 livG~~G~GKTTt~~kLA~~l~~~---G~kVllv~ 135 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYFQKR---GYKVGVVC 135 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEE
T ss_pred EEECcCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 567889999999998888887653 23555555
No 168
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=85.58 E-value=4 Score=39.72 Aligned_cols=137 Identities=13% Similarity=0.096 Sum_probs=71.2
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHH-HHhhcCCceEEEecC----ChhHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINE-FSTWAPSIAAVVYDG----RPDERKAMR 147 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E-~~k~~p~~~v~~~~g----~~~~r~~~~ 147 (773)
....++.-..|-|||..|++++......+ .+++|+-=. .....=..+ +.++ + +.+..+.- ....+....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G---~rV~~vQF~Kg~~~~gE~~~l~~L-~-v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG---KNVGVVQFIKGTWPNGERNLLEPH-G-VEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT---CCEEEEESSCCSSCCHHHHHHGGG-T-CEEEECCTTCCCCGGGHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEeeCCCCCccHHHHHHhC-C-cEEEEcccccccCCCCcHHHH
Confidence 44567888999999999999988777653 367777321 111000011 1222 1 22222111 111111000
Q ss_pred HHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccC----ChhhHHHHHHHccccceEEEecCCCCCCCHHH
Q 004103 148 EEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLK----NHECALAKTISGYQIQRRLLLTGTPIQNSLQE 223 (773)
Q Consensus 148 ~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lk----n~~s~~~~~l~~~~~~~rllLTgTP~~n~~~e 223 (773)
.. --..+..-...+..-.+++||+||.-..- =....+...+..-+...-++|||- +-+.+
T Consensus 103 ~~-------------a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr---~ap~~ 166 (196)
T 1g5t_A 103 AA-------------CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR---GCHRD 166 (196)
T ss_dssp HH-------------HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS---SCCHH
T ss_pred HH-------------HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC---CCcHH
Confidence 00 01222223344555689999999984321 122345566655566677999995 45566
Q ss_pred HHHhhccc
Q 004103 224 LWSLLNFL 231 (773)
Q Consensus 224 l~~lL~~L 231 (773)
|..+.+++
T Consensus 167 l~e~AD~V 174 (196)
T 1g5t_A 167 ILDLADTV 174 (196)
T ss_dssp HHHHCSEE
T ss_pred HHHhCcce
Confidence 66555544
No 169
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=85.57 E-value=2.7 Score=46.19 Aligned_cols=32 Identities=25% Similarity=0.198 Sum_probs=23.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
+++...|+|||.++..++.++... .+++++|.
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~ 132 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVA 132 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 567899999999988888877653 23555544
No 170
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=85.51 E-value=1.2 Score=49.83 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=19.1
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~ 97 (773)
...+.+|..++|+|||..+-++...
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHH
Confidence 3445688999999999988766543
No 171
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=85.26 E-value=2.7 Score=42.77 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=18.2
Q ss_pred CeEEecCCCCCHHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~ 97 (773)
+.+|..++|+|||..|-+++..
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4578899999999988777665
No 172
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.01 E-value=2.7 Score=46.53 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=17.5
Q ss_pred CeEEecCCCCCHHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~ 97 (773)
+.||..++|+|||..+-++...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4688999999999887666543
No 173
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=84.58 E-value=2.9 Score=45.01 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHH-Hhhc-----CCCCeEE--ecCCCCCHHHHHHHHHHHHHH
Q 004103 57 RAYQLEGLQWML-SLFN-----NNLNGIL--ADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 57 rpyQ~~gv~~l~-~~~~-----~~~~gIL--ademGlGKTi~aiali~~l~~ 100 (773)
|..+++.+..++ .... .+...+| ..+.|+|||..+-.++..+..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 556666665554 4321 2334577 799999999888777766544
No 174
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=84.42 E-value=3.4 Score=43.03 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=27.0
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Q 004103 72 NNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 116 (773)
Q Consensus 72 ~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sl 116 (773)
..+.+.+|..++|+|||..|-++.... ....+|++.|-...+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~---~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS---ARSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS---SCSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC---cccCCCeEEEeCCCC
Confidence 456677899999999998775555432 123457666644433
No 175
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=84.05 E-value=2.8 Score=38.72 Aligned_cols=27 Identities=26% Similarity=0.121 Sum_probs=20.6
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~ 99 (773)
.+...+|.-+.|+|||..+-+++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444567889999999988877776554
No 176
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=83.90 E-value=3.6 Score=45.95 Aligned_cols=85 Identities=16% Similarity=0.230 Sum_probs=56.3
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCC----------hhH--
Q 004103 76 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGR----------PDE-- 142 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~----------~~~-- 142 (773)
...|..-+|+|||+++.+++.. ..+|+|||+|. ....+|..++..|+|.. |..|-.. ..+
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p~~~~~ 88 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAER------HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDII 88 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCCCHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCCChHHH
Confidence 3467788999999887666532 24599999998 66788999999998865 5554331 111
Q ss_pred --HHHHHHHHHhhcCCccEEEcCHHHHHH
Q 004103 143 --RKAMREEFFSERGRFNVLITHYDLIMR 169 (773)
Q Consensus 143 --r~~~~~~~~~~~~~~~VvItTye~l~~ 169 (773)
|-.....+.. ....|||+|...+..
T Consensus 89 ~~Rl~~l~~L~~--~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 89 SSRLSTLYQLPT--MQRGVLIVPVNTLMQ 115 (483)
T ss_dssp HHHHHHHHHGGG--CCSSEEEEEHHHHHB
T ss_pred HHHHHHHHHHHh--CCCCEEEEEHHHHhh
Confidence 1111222222 345699999988864
No 177
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=82.99 E-value=8.2 Score=45.56 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=21.5
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~ 100 (773)
+.+.+|..++|+|||..+-+++..+..
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 445689999999999988777766644
No 178
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=82.77 E-value=5.8 Score=43.77 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=40.7
Q ss_pred HHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHH
Q 004103 63 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 124 (773)
Q Consensus 63 gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~ 124 (773)
++..++.-+..+.-.|++..+|+|||..++.++...... ..+++++..-....++...+
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms~~ql~~R~ 244 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGKKENIKRL 244 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSCTTHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHH
Confidence 455566434444446899999999999999888877664 34888887655444544433
No 179
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=82.70 E-value=4.6 Score=45.00 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=23.1
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 113 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP 113 (773)
.+.+|.-++|+|||..+-+++..+ ..|++.+..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~------~~~f~~is~ 82 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA------NVPFFHISG 82 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCH
Confidence 456789999999998887766543 236665544
No 180
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=81.71 E-value=5.2 Score=38.69 Aligned_cols=55 Identities=13% Similarity=0.037 Sum_probs=33.1
Q ss_pred HHHHHHH-hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc--chHHHHHH
Q 004103 63 GLQWMLS-LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA--VLPNWINE 123 (773)
Q Consensus 63 gv~~l~~-~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~s--ll~qW~~E 123 (773)
++..++. -+..+.-.+|+.+.|+|||..+..++. .. .++++++.-.. ....|..-
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~---~~~v~~i~~~~~~~~~~~~~~ 65 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LS---GKKVAYVDTEGGFSPERLVQM 65 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HH---CSEEEEEESSCCCCHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---Hc---CCcEEEEECCCCCCHHHHHHH
Confidence 4455543 233344457899999999988877766 21 24667766443 34445443
No 181
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=81.37 E-value=8.2 Score=37.99 Aligned_cols=50 Identities=22% Similarity=0.229 Sum_probs=35.1
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhh
Q 004103 76 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 127 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~ 127 (773)
-.+++.++|+|||..++.++....... ..+++++.-.....+....+...
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDLRREMASF 81 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeecccCCHHHHHHHHHHc
Confidence 358999999999999888776544332 24788888766666666555544
No 182
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=81.06 E-value=9.5 Score=39.79 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=40.6
Q ss_pred HHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHH
Q 004103 63 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFS 125 (773)
Q Consensus 63 gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~ 125 (773)
++..++.-+..+.-.+|+..+|+|||..++.++....... .++|++..-....+....+.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLEMGKKENIKRLI 116 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESSSCHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECCCCHHHHHHHHH
Confidence 4555553344454568999999999998888877665432 58888887655555554443
No 183
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=80.86 E-value=7.1 Score=46.89 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=21.8
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~ 100 (773)
..+.+|..+.|+|||..+-+++..+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 345789999999999988887776654
No 184
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=79.97 E-value=12 Score=38.68 Aligned_cols=37 Identities=22% Similarity=0.098 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHH
Q 004103 56 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI 95 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali 95 (773)
-|+.+++.+..++. .+...++..+.|+|||..+-.++
T Consensus 16 gR~~el~~L~~~l~---~~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 16 DREEESRKLEESLE---NYPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp SCHHHHHHHHHHHH---HCSEEEEECCTTSSHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh---cCCeEEEECCCcCCHHHHHHHHH
Confidence 36667766655553 24556789999999996654444
No 185
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=79.58 E-value=1.5 Score=50.65 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 59 YQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 59 yQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l 98 (773)
.-++.+...+ ..+...+|.-+.|+|||..+-+++..+
T Consensus 48 ~~l~~l~~~i---~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 48 HAVEVIKTAA---NQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHH---HTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hhHhhccccc---cCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3344444444 467778999999999998876665543
No 186
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=79.40 E-value=8.5 Score=40.93 Aligned_cols=56 Identities=14% Similarity=0.023 Sum_probs=37.7
Q ss_pred HHHHHHHH--hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHH
Q 004103 62 EGLQWMLS--LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 120 (773)
Q Consensus 62 ~gv~~l~~--~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW 120 (773)
.++..++. -+..+.-.+|+.+.|+|||..++.++...... .++++++.-.....++
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH
Confidence 34566653 23333445788999999999998888777653 3577888766555554
No 187
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=79.05 E-value=8.2 Score=43.82 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=30.1
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCC-CCEEEEeCCc
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIVAPKA 115 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~-gp~LIVvP~s 115 (773)
..+.+++..+|+|||...-+++..+....... -.+++|=|+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 45789999999999999888888877643222 2355556764
No 188
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=78.74 E-value=31 Score=33.92 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=48.5
Q ss_pred cCCcEEEEeecHHHHHHH----HHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-cc----c-ccCC
Q 004103 380 SGHRVLLFSQMTRLMDIL----EIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-AG----G-LGLN 449 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L----~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-ag----g-~GLN 449 (773)
.+.++||.+.....+..+ ..++...++.+..+.|+.+.......+.. ..+ ++++|. .. . ..++
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~---I~v~Tp~~l~~~l~~~~~~ 173 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVE---ICIATPGRLIDFLECGKTN 173 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCS---EEEECHHHHHHHHHHTSCC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCC---EEEECHHHHHHHHHcCCCC
Confidence 366899999988665554 44455668999999999998776655543 223 455553 22 1 2356
Q ss_pred cccCCeeEEeCC
Q 004103 450 LQTADTVIIFDS 461 (773)
Q Consensus 450 L~~ad~VI~~D~ 461 (773)
+...+.||+=+.
T Consensus 174 ~~~~~~lViDEa 185 (242)
T 3fe2_A 174 LRRTTYLVLDEA 185 (242)
T ss_dssp CTTCCEEEETTH
T ss_pred cccccEEEEeCH
Confidence 777777776443
No 189
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=78.59 E-value=8.6 Score=47.50 Aligned_cols=121 Identities=19% Similarity=0.196 Sum_probs=81.1
Q ss_pred cCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhhhc
Q 004103 301 DMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKS 380 (773)
Q Consensus 301 ~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~ 380 (773)
.+++.|...+..+.......+.... .+||-....-.+......
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApT-------------------------------------GSGKTl~~l~~il~~~~~ 120 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPT-------------------------------------GVGKTTFGMMTALWLARK 120 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCST-------------------------------------TCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCC-------------------------------------CCcHHHHHHHHHHHHHhc
Confidence 5889999999887754322222222 344444333333333356
Q ss_pred CCcEEEEeecHHHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-cccc---cCCcccC
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKL---NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-AGGL---GLNLQTA 453 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~---~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-agg~---GLNL~~a 453 (773)
+.++||.+..+..+..+.+.|.. .++.+..++|+++..+|...+..+..++.+ ++++|. ..-. -+++...
T Consensus 121 ~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~---IlV~Tp~rL~~~l~~l~~~~l 197 (1104)
T 4ddu_A 121 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH---ILVFSTQFVSKNREKLSQKRF 197 (1104)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCS---EEEEEHHHHHHSHHHHHTSCC
T ss_pred CCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCC---EEEECHHHHHHHHHhhcccCc
Confidence 78999999999998888888877 578999999999998888888889886555 455543 3311 1345567
Q ss_pred CeeEEeCC
Q 004103 454 DTVIIFDS 461 (773)
Q Consensus 454 d~VI~~D~ 461 (773)
+.||+=+.
T Consensus 198 ~~lViDEa 205 (1104)
T 4ddu_A 198 DFVFVDDV 205 (1104)
T ss_dssp SEEEESCH
T ss_pred CEEEEeCC
Confidence 77777444
No 190
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=78.19 E-value=14 Score=36.18 Aligned_cols=51 Identities=20% Similarity=0.130 Sum_probs=35.5
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHh
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 126 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k 126 (773)
.+.-.+|+.+.|+|||..++.++..+... .++++++.-.....+....+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEHPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCCHHHHHHHHHH
Confidence 34445788999999999988887776653 3578888766555555554443
No 191
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=77.80 E-value=7.3 Score=37.83 Aligned_cols=47 Identities=28% Similarity=0.314 Sum_probs=30.8
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 122 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~ 122 (773)
.+.-.+|..+.|+|||..+..++..+... .++++++.......+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~~~~~~~~ 68 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEESRDSIIR 68 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcccCHHHHHH
Confidence 34445788999999998887777666543 347777765444444333
No 192
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=77.78 E-value=9.1 Score=44.30 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=36.9
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q 004103 54 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 115 (773)
Q Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~s 115 (773)
+.+...|.+++..++.... + ..+|..+-|-|||..+-.+++.+. +.++|.+|+.
T Consensus 174 ~~~T~dQ~~al~~~~~~~~-~-~~vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~~ 227 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPP-G-VAAVTAARGRGKSALAGQLISRIA------GRAIVTAPAK 227 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCS-E-EEEEEECTTSSHHHHHHHHHHHSS------SCEEEECSSC
T ss_pred CCCCHHHHHHHHHHHHhhh-C-eEEEecCCCCCHHHHHHHHHHHHH------hCcEEECCCH
Confidence 5788899999988875432 2 236667799999955544444432 2468888973
No 193
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=76.53 E-value=3.3 Score=39.84 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=21.2
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~ 100 (773)
.+.+|..++|+|||..+-+++..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 55688999999999998887776654
No 194
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=75.71 E-value=32 Score=33.04 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=49.6
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-cc-----cccCC
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLN-----DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-AG-----GLGLN 449 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~-----g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-ag-----g~GLN 449 (773)
+.++||.+.....++.+.+.+... ++.+..++|+.+..++...+.. +..+ ++++|. .. ...++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~---~~~~---i~v~T~~~l~~~~~~~~~~ 155 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NCPH---IVVGTPGRILALARNKSLN 155 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---SCCS---EEEECHHHHHHHHHTTSSC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc---CCCC---EEEeCHHHHHHHHHhCCCC
Confidence 348999999988777766655432 7899999999987766555443 2223 455553 22 23456
Q ss_pred cccCCeeEEeCCC
Q 004103 450 LQTADTVIIFDSD 462 (773)
Q Consensus 450 L~~ad~VI~~D~~ 462 (773)
+...+.||+=+.+
T Consensus 156 ~~~~~~lViDEah 168 (220)
T 1t6n_A 156 LKHIKHFILDECD 168 (220)
T ss_dssp CTTCCEEEEESHH
T ss_pred cccCCEEEEcCHH
Confidence 7777887775443
No 195
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=75.46 E-value=8.6 Score=36.70 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=48.0
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe--CCcchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcCCc
Q 004103 80 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA--PKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRF 157 (773)
Q Consensus 80 ademGlGKTi~aiali~~l~~~~~~~gp~LIVv--P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~ 157 (773)
.---|.|||.+++.++..+...+ .++|+|= |...+..|... .+ ..+
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g---~~vlliD~D~~~~~~~~~~~----~~-------------------------~~~ 55 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSG---YNIAVVDTDPQMSLTNWSKA----GK-------------------------AAF 55 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHTT----SC-------------------------CSS
T ss_pred eCCCCccHHHHHHHHHHHHHHCC---CeEEEEECCCCCCHHHHHhc----CC-------------------------CCC
Confidence 34578999999999998887642 3666664 44555555320 00 224
Q ss_pred cEEEcCHHHHHHhHHHHhhcCeeEEEEcccccc
Q 004103 158 NVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRL 190 (773)
Q Consensus 158 ~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~l 190 (773)
+++-...+.+......+.. .+++||||=.-.+
T Consensus 56 ~~~~~~~~~l~~~l~~l~~-~yD~viiD~~~~~ 87 (206)
T 4dzz_A 56 DVFTAASEKDVYGIRKDLA-DYDFAIVDGAGSL 87 (206)
T ss_dssp EEEECCSHHHHHTHHHHTT-TSSEEEEECCSSS
T ss_pred cEEecCcHHHHHHHHHhcC-CCCEEEEECCCCC
Confidence 4555554555555555544 5899999965444
No 196
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=75.17 E-value=12 Score=38.94 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=22.7
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
++..+.|+|||.++..++..+... .+.++++.
T Consensus 108 ~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~ 139 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAA 139 (306)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEc
Confidence 456789999998887777766543 34566554
No 197
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=75.11 E-value=17 Score=37.63 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=22.2
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
++....|+|||.++..++..+....+ .+++++.
T Consensus 109 ~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~ 141 (296)
T 2px0_A 109 VLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFIT 141 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEe
Confidence 55678999999988777777654222 2555554
No 198
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=74.91 E-value=27 Score=34.69 Aligned_cols=74 Identities=11% Similarity=0.109 Sum_probs=47.0
Q ss_pred CCcEEEEeecHHHHHHHHHHH----HhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-cc------cccCC
Q 004103 381 GHRVLLFSQMTRLMDILEIYL----KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-AG------GLGLN 449 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L----~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-ag------g~GLN 449 (773)
+.++||.+.....+.-+.+.+ ...++.+..+.|+.+..+....+. . ..+ ++++|. .. ..+++
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~---I~v~Tp~~l~~~l~~~~~~~ 183 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA---K-KPH---IIIATPGRLIDHLENTKGFN 183 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH---T-CCS---EEEECHHHHHHHHHHSTTCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc---C-CCC---EEEECHHHHHHHHHcCCCcC
Confidence 457999999887766555544 344889999999988765544432 2 233 455553 22 23567
Q ss_pred cccCCeeEEeCC
Q 004103 450 LQTADTVIIFDS 461 (773)
Q Consensus 450 L~~ad~VI~~D~ 461 (773)
+...+.||+=+.
T Consensus 184 l~~~~~lViDEa 195 (249)
T 3ber_A 184 LRALKYLVMDEA 195 (249)
T ss_dssp CTTCCEEEECSH
T ss_pred ccccCEEEEcCh
Confidence 777887777443
No 199
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=74.85 E-value=16 Score=45.37 Aligned_cols=97 Identities=10% Similarity=0.051 Sum_probs=66.3
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEE
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 439 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~Ll 439 (773)
+||-......+-.....|.+++|.+..+..+..+.+.+. ..++.+..++|..+..++...++....+..+ |++.
T Consensus 635 sGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~d--IvV~ 712 (1151)
T 2eyq_A 635 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID--ILIG 712 (1151)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS--EEEE
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC--EEEE
Confidence 445443332222233457799999999877666555554 3478899999999999999999999887666 4444
Q ss_pred ecccccccCCcccCCeeEEeCCC
Q 004103 440 STRAGGLGLNLQTADTVIIFDSD 462 (773)
Q Consensus 440 St~agg~GLNL~~ad~VI~~D~~ 462 (773)
+.......+++...+.||+=+.+
T Consensus 713 T~~ll~~~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 713 THKLLQSDVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp CTHHHHSCCCCSSEEEEEEESGG
T ss_pred CHHHHhCCccccccceEEEechH
Confidence 44556666777777777774443
No 200
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=74.81 E-value=5.1 Score=47.42 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=19.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~ 99 (773)
.+|..++|+|||..|-++...+.
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 68899999999999887777663
No 201
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=74.05 E-value=22 Score=34.50 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=44.5
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-cc-----cccCCc
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKL---NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-AG-----GLGLNL 450 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~---~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-ag-----g~GLNL 450 (773)
.+.++||.+.....+..+.+.+.. .++....+.|+.+..++...+. . ..+ ++++|. .. ...+++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~---iiv~Tp~~l~~~~~~~~~~~ 165 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDIS---K-GVD---IIIATPGRLNDLQMNNSVNL 165 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHH---S-CCS---EEEECHHHHHHHHHTTCCCC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhc---C-CCC---EEEECHHHHHHHHHcCCcCc
Confidence 577899999999888877777765 4788999999887655444332 2 223 455553 22 224567
Q ss_pred ccCCeeEEeC
Q 004103 451 QTADTVIIFD 460 (773)
Q Consensus 451 ~~ad~VI~~D 460 (773)
...+.||+=+
T Consensus 166 ~~~~~lViDE 175 (228)
T 3iuy_A 166 RSITYLVIDE 175 (228)
T ss_dssp TTCCEEEECC
T ss_pred ccceEEEEEC
Confidence 7777777644
No 202
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=73.12 E-value=16 Score=38.16 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=23.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
.+....|.|||.++..++..+... .++++++.
T Consensus 109 ~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid 140 (320)
T 1zu4_A 109 MLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAA 140 (320)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 455779999999888877776543 35666664
No 203
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=72.63 E-value=5.7 Score=49.46 Aligned_cols=51 Identities=22% Similarity=0.188 Sum_probs=38.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhc
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWA 128 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~ 128 (773)
++-...|+|||.+.+.-+++++.......++|+|||...-.+-...+.+..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l 55 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTP 55 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCS
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhh
Confidence 344558999999999999999987555579999999876555444554443
No 204
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=72.20 E-value=16 Score=39.15 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=39.2
Q ss_pred HHHHHHH--hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHH
Q 004103 63 GLQWMLS--LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 121 (773)
Q Consensus 63 gv~~l~~--~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~ 121 (773)
++..++. -+..+.-.+|+.+.|+|||..++.++...... .+++++|.......+|.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHALDPVY 118 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCChhHHH
Confidence 4566653 23334445789999999999999888877653 35888888776666664
No 205
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.34 E-value=1.3 Score=48.70 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=31.2
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 121 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~ 121 (773)
+.+.+|..++|+|||+.|-|++..+ ..+++.|....++..|.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT------NATFLKLAAPQLVQMYI 256 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCSSCS
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEehhhhhhccc
Confidence 4455789999999999988887654 22777777777766654
No 206
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=70.31 E-value=20 Score=37.36 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=32.9
Q ss_pred HHHHHHH-hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh---cCCCCCEEEEeCCcc
Q 004103 63 GLQWMLS-LFNNNLNGILADEMGLGKTIQTIALIAYLLEN---KGVTGPHVIVAPKAV 116 (773)
Q Consensus 63 gv~~l~~-~~~~~~~gILademGlGKTi~aiali~~l~~~---~~~~gp~LIVvP~sl 116 (773)
++..++. -+..+.-.+++.+.|+|||..++.++...... .+..+++++|.-...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4455542 12333345889999999999888877653221 112457787776543
No 207
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=70.00 E-value=57 Score=33.53 Aligned_cols=36 Identities=19% Similarity=0.061 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHH
Q 004103 57 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~ 97 (773)
|+.+++.+.. + .. ...++..+.|+|||..+-.++..
T Consensus 18 R~~el~~L~~-l---~~-~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 18 REKEIEKLKG-L---RA-PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp CHHHHHHHHH-T---CS-SEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHH-h---cC-CcEEEECCCCCCHHHHHHHHHHh
Confidence 5666665544 3 33 45678899999999776655543
No 208
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=69.56 E-value=13 Score=37.65 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=32.9
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcC--------CCCCEEEEeCCcchHHHHHHHHh
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLENKG--------VTGPHVIVAPKAVLPNWINEFST 126 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~~~~--------~~gp~LIVvP~sll~qW~~E~~k 126 (773)
.+.-.+|+.+.|+|||..+..++..+. .+. ..++++++.-.....+....+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~ 89 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHA 89 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCHHHHHHHHHH
Confidence 444467889999999998887776543 210 13577777665544444333333
No 209
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=69.42 E-value=38 Score=32.95 Aligned_cols=73 Identities=11% Similarity=0.056 Sum_probs=47.2
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-cc-----cccC
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLN-----DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-AG-----GLGL 448 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~-----g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-ag-----g~GL 448 (773)
.+.++||.+.....+..+.+.+... ++++..++|+.+..++...+ + ..+ ++++|. .. ...+
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~---Iiv~Tp~~l~~~~~~~~~ 162 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K--KCH---IAVGSPGRIKQLIELDYL 162 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T--SCS---EEEECHHHHHHHHHTTSS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c--CCC---EEEECHHHHHHHHhcCCc
Confidence 3568999999988777766666432 78899999999877665443 2 222 444443 22 1245
Q ss_pred CcccCCeeEEeC
Q 004103 449 NLQTADTVIIFD 460 (773)
Q Consensus 449 NL~~ad~VI~~D 460 (773)
++...+.||+=+
T Consensus 163 ~~~~~~~lViDE 174 (230)
T 2oxc_A 163 NPGSIRLFILDE 174 (230)
T ss_dssp CGGGCCEEEESS
T ss_pred ccccCCEEEeCC
Confidence 666777776633
No 210
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=69.27 E-value=6.2 Score=49.43 Aligned_cols=68 Identities=10% Similarity=0.073 Sum_probs=47.9
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC---CCCCEEEEeCCcch-HHHHHHHHh
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG---VTGPHVIVAPKAVL-PNWINEFST 126 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~---~~gp~LIVvP~sll-~qW~~E~~k 126 (773)
+.+|.+-|.++|.. .+.+.++....|+|||.+.+.=+.+++.... ....+|+|+++... ....+.+..
T Consensus 8 ~~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp --CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 45799999998851 3556788899999999998887888877543 34578999998443 334444443
No 211
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=68.91 E-value=2.9 Score=49.68 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=26.8
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 120 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW 120 (773)
.+.+|..++|+|||+.|-+++..+ ..+++.|....++..|
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMW 551 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHHHTTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchhhccc
Confidence 356889999999998887776533 2355555544555545
No 212
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=68.89 E-value=90 Score=31.01 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=47.9
Q ss_pred cCCcEEEEeecHHHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc------c-ccccC
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR------A-GGLGL 448 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~------a-gg~GL 448 (773)
.+.++||.+.....+.-+.+.+. ..+..+..+.|+.........+. .+ .+ ++++|. . ...++
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~-~~---Iiv~Tp~~l~~~~~~~~~~ 197 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG---NG-IN---IIVATPGRLLDHMQNTPGF 197 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHH---HC-CS---EEEECHHHHHHHHHHCTTC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhc---CC-CC---EEEEcHHHHHHHHHccCCc
Confidence 46789999999877666555554 45788899999988765544432 22 23 566662 1 12356
Q ss_pred CcccCCeeEEeC
Q 004103 449 NLQTADTVIIFD 460 (773)
Q Consensus 449 NL~~ad~VI~~D 460 (773)
++...+.||+=+
T Consensus 198 ~~~~l~~lViDE 209 (262)
T 3ly5_A 198 MYKNLQCLVIDE 209 (262)
T ss_dssp CCTTCCEEEECS
T ss_pred ccccCCEEEEcC
Confidence 777787777644
No 213
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=68.60 E-value=9.8 Score=41.74 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=24.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
+++...|.|||.++..++.++.... ..++++|.
T Consensus 104 ~ivG~~GvGKTT~a~~LA~~l~~~~--G~kVllvd 136 (433)
T 2xxa_A 104 LMAGLQGAGKTTSVGKLGKFLREKH--KKKVLVVS 136 (433)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTS--CCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEEe
Confidence 4567899999999999998887641 23556554
No 214
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=66.85 E-value=42 Score=35.20 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=49.7
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc-----cccCCc
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLN-----DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-----GLGLNL 450 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~-----g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag-----g~GLNL 450 (773)
+.++||.+.....++.+.+.+... ++.+..++|+.+..+....+.. +..+ |++.+.... ...+++
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~--iiv~T~~~l~~~~~~~~~~~ 150 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NCPH--IVVGTPGRILALARNKSLNL 150 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH---SCCS--EEEECHHHHHHHHHTTSSCC
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc---CCCC--EEEECHHHHHHHHHcCCccc
Confidence 568999999988877766655432 7899999999998776655543 2233 344443333 224566
Q ss_pred ccCCeeEEeCC
Q 004103 451 QTADTVIIFDS 461 (773)
Q Consensus 451 ~~ad~VI~~D~ 461 (773)
...+.||+=+.
T Consensus 151 ~~~~~vViDEa 161 (391)
T 1xti_A 151 KHIKHFILDEC 161 (391)
T ss_dssp TTCSEEEECSH
T ss_pred cccCEEEEeCH
Confidence 77777777443
No 215
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=66.70 E-value=46 Score=32.35 Aligned_cols=74 Identities=14% Similarity=0.147 Sum_probs=43.7
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccc------ccCC
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKL----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG------LGLN 449 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg------~GLN 449 (773)
.+.++||.+.....+.-+.+.+.. .++.+..++|+.+.......+ + +.+ |++.+....- ..++
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~--iiv~Tp~~l~~~l~~~~~~~ 168 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---N--NIN--ILVCTPGRLLQHMDETVSFH 168 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH---T--TCS--EEEECHHHHHHHHHHCSSCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC---C--CCC--EEEECHHHHHHHHHhcCCcc
Confidence 467899999998777666665543 358899999987765544433 2 223 3444433221 1356
Q ss_pred cccCCeeEEeC
Q 004103 450 LQTADTVIIFD 460 (773)
Q Consensus 450 L~~ad~VI~~D 460 (773)
+...+.||+=+
T Consensus 169 ~~~~~~lViDE 179 (236)
T 2pl3_A 169 ATDLQMLVLDE 179 (236)
T ss_dssp CTTCCEEEETT
T ss_pred cccccEEEEeC
Confidence 66677776633
No 216
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=65.94 E-value=6.8 Score=40.82 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.4
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~ 99 (773)
+.+.+|..++|+|||..+.+++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45668899999999999998888877
No 217
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=65.80 E-value=15 Score=37.48 Aligned_cols=42 Identities=7% Similarity=-0.091 Sum_probs=28.4
Q ss_pred hcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 004103 71 FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 114 (773)
Q Consensus 71 ~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~ 114 (773)
+..+.-.+|+.+.|+|||..+..++..+.... ..+++++...
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~e 73 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAMLE 73 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEeCc
Confidence 44454567899999999988877776655431 2267777654
No 218
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.73 E-value=2 Score=47.23 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=29.7
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 120 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW 120 (773)
+.|.+|..++|+|||..|-|++..+ ..+++.|....++..|
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEFVHKY 246 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGTCCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchhhccc
Confidence 3445789999999999988887655 2367777666666555
No 219
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=65.67 E-value=38 Score=32.88 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=30.0
Q ss_pred HHHHHHH-hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc---CCCCCEEEEeCC
Q 004103 63 GLQWMLS-LFNNNLNGILADEMGLGKTIQTIALIAYLLENK---GVTGPHVIVAPK 114 (773)
Q Consensus 63 gv~~l~~-~~~~~~~gILademGlGKTi~aiali~~l~~~~---~~~gp~LIVvP~ 114 (773)
++.+++. -...+.-.+|+.+.|+|||..+..++....... +..++++.+.-.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 3555552 123334457889999999988877765422211 123466666544
No 220
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=64.07 E-value=21 Score=36.72 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=23.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
.+....|.|||..+..++..+... .+.++++.
T Consensus 102 ~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~ 133 (295)
T 1ls1_A 102 FLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVA 133 (295)
T ss_dssp EEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCeEEEec
Confidence 345789999999888777776543 35666665
No 221
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=63.83 E-value=17 Score=39.78 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=23.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
+++...|+|||.++..++.++... .++++++.
T Consensus 102 ~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd 133 (425)
T 2ffh_A 102 FLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVA 133 (425)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCeEEEee
Confidence 456789999999988887777543 34666665
No 222
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=62.92 E-value=78 Score=29.69 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=47.5
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-cc-----cccCCcc
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-AG-----GLGLNLQ 451 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-ag-----g~GLNL~ 451 (773)
.+.++||.+.....+.-+.+.+... ++.+..++|+.+.......+.. ..+ ++++|. .. ...+++.
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---i~v~T~~~l~~~~~~~~~~~~ 143 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GAD---AVVATPGRALDYLRQGVLDLS 143 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCS---EEEECHHHHHHHHHHTSSCCT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCC---EEEECHHHHHHHHHcCCcchh
Confidence 4678999999988877777777544 4788889998876554443322 223 455553 21 1245666
Q ss_pred cCCeeEEeCC
Q 004103 452 TADTVIIFDS 461 (773)
Q Consensus 452 ~ad~VI~~D~ 461 (773)
..+.||+=+.
T Consensus 144 ~~~~iViDEa 153 (207)
T 2gxq_A 144 RVEVAVLDEA 153 (207)
T ss_dssp TCSEEEEESH
T ss_pred hceEEEEECh
Confidence 7777776443
No 223
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=62.47 E-value=27 Score=36.66 Aligned_cols=42 Identities=10% Similarity=-0.018 Sum_probs=31.1
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHH
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN 119 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~q 119 (773)
..++-+.|+|||..++-+++..... +..++++.|.....+.+
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhhH
Confidence 4688999999999999888777653 22457888887655444
No 224
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=62.19 E-value=8.7 Score=37.70 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=19.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l 98 (773)
.++..++|+|||..+.+++..+
T Consensus 61 ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999998888765
No 225
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=62.06 E-value=13 Score=37.18 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=24.2
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 116 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sl 116 (773)
..+.+|..++|+|||..+-+++..+ ..|++.|-...+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~------~~~~~~i~~~~~ 81 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTISGSDF 81 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH------TCCEEEECSCSS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc------CCCEEEEeHHHH
Confidence 3356789999999998876666543 225555544433
No 226
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=61.99 E-value=95 Score=29.06 Aligned_cols=75 Identities=7% Similarity=0.030 Sum_probs=45.7
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHh----C-CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-cc----c-ccC
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKL----N-DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-AG----G-LGL 448 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~----~-g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-ag----g-~GL 448 (773)
.+.++||.+.....+..+.+.+.. . ++.+..++|+.+..+.... +.. ..+ ++++|. .. . ..+
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~-~~~---i~v~T~~~l~~~~~~~~~ 142 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---LDD-TVH---VVIATPGRILDLIKKGVA 142 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---TTS-CCS---EEEECHHHHHHHHHTTCS
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---cCC-CCC---EEEeCHHHHHHHHHcCCc
Confidence 356899999998877666665533 2 7889999999887554332 222 223 455543 22 1 134
Q ss_pred CcccCCeeEEeCC
Q 004103 449 NLQTADTVIIFDS 461 (773)
Q Consensus 449 NL~~ad~VI~~D~ 461 (773)
++...+.||+=+.
T Consensus 143 ~~~~~~~lViDEa 155 (206)
T 1vec_A 143 KVDHVQMIVLDEA 155 (206)
T ss_dssp CCTTCCEEEEETH
T ss_pred CcccCCEEEEECh
Confidence 5667777776443
No 227
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=61.87 E-value=41 Score=32.28 Aligned_cols=75 Identities=11% Similarity=0.065 Sum_probs=39.4
Q ss_pred cCCcEEEEeecHHHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc-----cccCCc
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-----GLGLNL 450 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag-----g~GLNL 450 (773)
.+.++||.+.....+..+.+.+. ..++.+..++|+.+..+.... +.. .+ |++.+.... ...+++
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~--~~--iiv~Tp~~l~~~~~~~~~~~ 153 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LRD--AQ--IVVGTPGRVFDNIQRRRFRT 153 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CTT--CS--EEEECHHHHHHHHHTTSSCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CCC--CC--EEEECHHHHHHHHHhCCcch
Confidence 35689999999877666665553 347889999998876544332 222 22 434333322 224556
Q ss_pred ccCCeeEEeCC
Q 004103 451 QTADTVIIFDS 461 (773)
Q Consensus 451 ~~ad~VI~~D~ 461 (773)
...+.||+=+.
T Consensus 154 ~~~~~iViDEa 164 (224)
T 1qde_A 154 DKIKMFILDEA 164 (224)
T ss_dssp TTCCEEEEETH
T ss_pred hhCcEEEEcCh
Confidence 66777776443
No 228
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=61.46 E-value=35 Score=36.59 Aligned_cols=77 Identities=16% Similarity=0.260 Sum_probs=51.7
Q ss_pred hcCCcEEEEeecHHHHHHHHHHHHhC-CC---eEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccc-----cCC
Q 004103 379 KSGHRVLLFSQMTRLMDILEIYLKLN-DF---KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL-----GLN 449 (773)
Q Consensus 379 ~~g~kvLIFsq~~~~ld~L~~~L~~~-g~---~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~-----GLN 449 (773)
..+.++||.+.....+.-+.+.+... +. .+..++|+....++...... .+ |++++...... .++
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-----~~--ivv~T~~~l~~~~~~~~~~ 122 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-----AK--VIVATPQTIENDLLAGRIS 122 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-----CS--EEEECHHHHHHHHHTTSCC
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC-----CC--EEEecHHHHHHHHhcCCcc
Confidence 35779999999988777666666443 55 89999999998877655432 22 45555444332 456
Q ss_pred cccCCeeEEeCCC
Q 004103 450 LQTADTVIIFDSD 462 (773)
Q Consensus 450 L~~ad~VI~~D~~ 462 (773)
+...+.||+=+.+
T Consensus 123 ~~~~~~vIiDEaH 135 (494)
T 1wp9_A 123 LEDVSLIVFDEAH 135 (494)
T ss_dssp TTSCSEEEEETGG
T ss_pred hhhceEEEEECCc
Confidence 6777888875443
No 229
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=60.37 E-value=5.6 Score=43.96 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhhcCC----CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHH
Q 004103 57 RAYQLEGLQWMLSLFNNN----LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN 119 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~~~~----~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~q 119 (773)
....++.+..++.....+ .+.+|..++|+|||..|-+++..+-. ..+++.|....+...
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~----~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 42 QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS----KVPFCPMVGSEVYST 104 (456)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT----TSCEEEEEGGGGCCS
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC----CceEEEEeHHHHHHH
Confidence 344555444444443332 45688999999999999888876521 236666665554433
No 230
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=59.52 E-value=45 Score=34.98 Aligned_cols=40 Identities=15% Similarity=0.025 Sum_probs=27.1
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh---cCCCCCEEEEeCCcc
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN---KGVTGPHVIVAPKAV 116 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~---~~~~gp~LIVvP~sl 116 (773)
.+++.+.|+|||..++.++...... .+..+++++|.-...
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4789999999999888777653221 113457788876543
No 231
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=58.88 E-value=19 Score=43.20 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=23.3
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEE
Q 004103 76 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 111 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~~~~~~~gp~LIV 111 (773)
+.++..++|+|||..|-++...+... .++++.|
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~---~~~~i~i 622 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRI 622 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSS---GGGEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC---CCcEEEE
Confidence 45789999999999887777666432 2355544
No 232
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=58.40 E-value=44 Score=35.42 Aligned_cols=52 Identities=17% Similarity=0.083 Sum_probs=35.7
Q ss_pred HHHHHHH--hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcch
Q 004103 63 GLQWMLS--LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 117 (773)
Q Consensus 63 gv~~l~~--~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll 117 (773)
++..++. -+..+.-.+++.+.|+|||..++.++..+... .+++++|......
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~ 103 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHAL 103 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCc
Confidence 4555553 23334446889999999999999888877653 2477888765443
No 233
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=58.20 E-value=17 Score=47.29 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=37.1
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhc
Q 004103 72 NNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWA 128 (773)
Q Consensus 72 ~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~ 128 (773)
..+.+.+|.-++|+|||..|++++...... .+.++++.....+.+-. ..+|.
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e~~~~~l~--a~~~G 1476 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY--ARKLG 1476 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH--HHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEcccccCHHH--HHHcC
Confidence 356667899999999999999998766543 35778888776554433 44553
No 234
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=56.69 E-value=30 Score=39.52 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=48.7
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 442 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ 442 (773)
+.++||.+.....+.-..+.|...|+++..++|+++..++..++..+........+++++..
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 34899999999998888888888899999999999999998888888432333445555554
No 235
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=55.27 E-value=51 Score=34.99 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=30.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHH
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN 119 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~q 119 (773)
.+|.-+.|+|||..++.++..+... .+++++|.+.....+
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDP 103 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccch
Confidence 4678899999999988888776543 357888887655544
No 236
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=55.11 E-value=73 Score=30.98 Aligned_cols=76 Identities=9% Similarity=0.095 Sum_probs=39.8
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-----ccc-ccCC
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKL----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-----AGG-LGLN 449 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-----agg-~GLN 449 (773)
.+.++||.+.....+.-+.+.+.. .++.+..+.|+.+.... ...+..+..+ ++++|. ... ..++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~---Ilv~Tp~~l~~~l~~~~~~ 170 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPH---IVVGTPGRVFDMLNRRYLS 170 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCS---EEEECHHHHHHHHHTTSSC
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCC---EEEECHHHHHHHHHhCCcC
Confidence 356899999998777666666543 36788888887664332 2233333333 555552 222 2356
Q ss_pred cccCCeeEEeCC
Q 004103 450 LQTADTVIIFDS 461 (773)
Q Consensus 450 L~~ad~VI~~D~ 461 (773)
+...+.||+=+.
T Consensus 171 ~~~~~~lViDEa 182 (237)
T 3bor_A 171 PKWIKMFVLDEA 182 (237)
T ss_dssp STTCCEEEEESH
T ss_pred cccCcEEEECCc
Confidence 666777776443
No 237
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=55.04 E-value=30 Score=38.29 Aligned_cols=74 Identities=14% Similarity=0.250 Sum_probs=44.8
Q ss_pred CCcEEEEeecHHHHHHH----HHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccc----c-C-Cc
Q 004103 381 GHRVLLFSQMTRLMDIL----EIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL----G-L-NL 450 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L----~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~----G-L-NL 450 (773)
+.++||.+.....+.-+ ..++...++.+..++|+.+...+...+.. ..+ |++.+....-. + + .+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~--i~v~T~~~l~~~~~~~~~~~~ 125 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE----DND--IIILTPQILVNNLNNGAIPSL 125 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----HCS--EEEECHHHHHHHHHTSSSCCG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----CCC--EEEECHHHHHHHHhcCccccc
Confidence 67899999987665544 44445559999999999876544332221 122 44444443322 1 3 56
Q ss_pred ccCCeeEEeC
Q 004103 451 QTADTVIIFD 460 (773)
Q Consensus 451 ~~ad~VI~~D 460 (773)
...+.||+=+
T Consensus 126 ~~~~~vViDE 135 (555)
T 3tbk_A 126 SVFTLMIFDE 135 (555)
T ss_dssp GGCSEEEETT
T ss_pred ccCCEEEEEC
Confidence 6677777733
No 238
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=54.90 E-value=34 Score=37.99 Aligned_cols=75 Identities=11% Similarity=0.163 Sum_probs=42.9
Q ss_pred CCcEEEEeecHHHHHHHHHHH----HhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccc----c-C-Cc
Q 004103 381 GHRVLLFSQMTRLMDILEIYL----KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL----G-L-NL 450 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L----~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~----G-L-NL 450 (773)
+.++||.+.....+.-+...+ ...++.+..++|+.+...+...+.. ..+ |++.+....-. | + ++
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~--i~v~T~~~l~~~~~~~~~~~~ 128 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSD--IIVVTPQILVNSFEDGTLTSL 128 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCS--EEEECHHHHHHHHHSSSCCCS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCC--EEEECHHHHHHHHHhCccccc
Confidence 678999999887665555444 4449999999999876654333321 122 44444443331 1 3 56
Q ss_pred ccCCeeEEeCC
Q 004103 451 QTADTVIIFDS 461 (773)
Q Consensus 451 ~~ad~VI~~D~ 461 (773)
...+.||+=+.
T Consensus 129 ~~~~~vViDEa 139 (556)
T 4a2p_A 129 SIFTLMIFDEC 139 (556)
T ss_dssp TTCSEEEEETG
T ss_pred ccCCEEEEECC
Confidence 67788887444
No 239
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=54.22 E-value=52 Score=34.88 Aligned_cols=32 Identities=9% Similarity=-0.032 Sum_probs=24.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
+...--|.|||..|+.++..+...+ .++|+|-
T Consensus 148 v~s~KGGvGKTT~a~nLA~~La~~g---~rVlliD 179 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACAIAHANMG---KKVFYLN 179 (373)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHHT---CCEEEEE
T ss_pred EECCCCCChHHHHHHHHHHHHHhCC---CCEEEEE
Confidence 4456789999999999998887752 3677764
No 240
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=54.09 E-value=54 Score=40.21 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=53.0
Q ss_pred HHhhhcCCcEEEEeecHHHHHHHHHHH----HhCCC----eEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccc
Q 004103 375 PKLRKSGHRVLLFSQMTRLMDILEIYL----KLNDF----KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL 446 (773)
Q Consensus 375 ~~l~~~g~kvLIFsq~~~~ld~L~~~L----~~~g~----~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~ 446 (773)
..+...+.++||.+.....+..+.+.+ ...++ .+..++|+++..++....+.+.. .+ |++.+....-.
T Consensus 93 ~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~--IlV~TP~~L~~ 168 (1054)
T 1gku_B 93 LFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FK--IVITTTQFLSK 168 (1054)
T ss_dssp HHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CS--EEEEEHHHHHH
T ss_pred HHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CC--EEEEcHHHHHH
Confidence 333345779999999987765555544 44577 89999999999888888887766 33 34444333333
Q ss_pred cCC-cccCCeeEEeC
Q 004103 447 GLN-LQTADTVIIFD 460 (773)
Q Consensus 447 GLN-L~~ad~VI~~D 460 (773)
-+. |...+.||+=+
T Consensus 169 ~l~~L~~l~~lViDE 183 (1054)
T 1gku_B 169 HYRELGHFDFIFVDD 183 (1054)
T ss_dssp CSTTSCCCSEEEESC
T ss_pred HHHHhccCCEEEEeC
Confidence 222 55566666533
No 241
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=53.24 E-value=39 Score=34.89 Aligned_cols=36 Identities=19% Similarity=0.083 Sum_probs=23.7
Q ss_pred HHHHHHHH-hhcCCCCeEEecCCCCCHHHHHHHHHHH
Q 004103 62 EGLQWMLS-LFNNNLNGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 62 ~gv~~l~~-~~~~~~~gILademGlGKTi~aiali~~ 97 (773)
.++..++. -+..+.-.+++.+.|+|||..++.++..
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34555552 1222333588999999999988877765
No 242
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=53.23 E-value=39 Score=28.94 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=44.7
Q ss_pred cEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCC
Q 004103 383 RVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 432 (773)
Q Consensus 383 kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~ 432 (773)
-++|||.-+..+..|...+...|..++.+.+....+.|.+.+..|.....
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgv 53 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGV 53 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999999999999999999999987543
No 243
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=52.95 E-value=1.1e+02 Score=31.89 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=48.2
Q ss_pred cCCcEEEEeecHHHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc-----cccCCc
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-----GLGLNL 450 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag-----g~GLNL 450 (773)
.+.++||.+.....+..+.+.+. ..++.+..++|+.+..+....+.. .+ |++.+.... ...+.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~--i~v~T~~~l~~~~~~~~~~~ 160 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-----AQ--IVVGTPGRVFDNIQRRRFRT 160 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHH-----CS--EEEECHHHHHHHHHTTSSCC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCC-----CC--EEEECHHHHHHHHHhCCcch
Confidence 45699999999877766655553 457899999999988766555441 22 344443322 123455
Q ss_pred ccCCeeEEeCCC
Q 004103 451 QTADTVIIFDSD 462 (773)
Q Consensus 451 ~~ad~VI~~D~~ 462 (773)
...+.||+=+.+
T Consensus 161 ~~~~~vIiDEah 172 (394)
T 1fuu_A 161 DKIKMFILDEAD 172 (394)
T ss_dssp TTCCEEEEETHH
T ss_pred hhCcEEEEEChH
Confidence 667777775443
No 244
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=52.46 E-value=36 Score=38.04 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=50.4
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccc
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 444 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 444 (773)
+.++||.+.....+.-..+.|...|+++..++|+.+..++......+..+..+ ++++++...
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~--ilv~Tpe~l 126 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIR--LLYIAPERL 126 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCS--EEEECHHHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCC--EEEECHHHH
Confidence 35799999999999988888999999999999999999988888888776655 455554433
No 245
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=51.31 E-value=25 Score=36.16 Aligned_cols=42 Identities=21% Similarity=0.116 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHhh----cCCCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 57 RAYQLEGLQWMLSLF----NNNLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~----~~~~~gILademGlGKTi~aiali~~l 98 (773)
++..+..+..++... ....+.+|..+.|+|||..+-++...+
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 445555554444332 233567899999999998887766544
No 246
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=50.86 E-value=37 Score=28.30 Aligned_cols=92 Identities=7% Similarity=-0.026 Sum_probs=40.1
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEe
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIF 459 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~ 459 (773)
.|..+..+......++.+ ....+..+.+|-.++...-.++++..+.......++++|...... .....+...-++
T Consensus 24 ~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~l 98 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEYV 98 (116)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEEE
T ss_pred CCCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccceE
Confidence 355555444433333333 334566777766554332333333333211223345554432221 222111111223
Q ss_pred CCCCChhhHHHHhhhhh
Q 004103 460 DSDWNPQMDQQAEDRAH 476 (773)
Q Consensus 460 D~~wNp~~~~Qa~gRa~ 476 (773)
.-|.++....+++.++.
T Consensus 99 ~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 99 VKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ECCSSTHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHh
Confidence 35667777777666554
No 247
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=50.63 E-value=1.4e+02 Score=31.23 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=46.7
Q ss_pred cCCcEEEEeecHHHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEec-ccc-----cccCC
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST-RAG-----GLGLN 449 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt-~ag-----g~GLN 449 (773)
.+.++||.+.....+..+.+.+. ..++.+..+.|+....+.... .+. ..+ ++++| ... ....+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~-~~~---Ivv~T~~~l~~~~~~~~~~ 160 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR---LNE-TVH---ILVGTPGRVLDLASRKVAD 160 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH---TTS-CCS---EEEECHHHHHHHHHTTCSC
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH---hcC-CCC---EEEEchHHHHHHHHhCCcc
Confidence 45689999999877666555554 347889999999886543322 222 333 45554 221 22356
Q ss_pred cccCCeeEEeCCC
Q 004103 450 LQTADTVIIFDSD 462 (773)
Q Consensus 450 L~~ad~VI~~D~~ 462 (773)
+...+.||+=+.+
T Consensus 161 ~~~~~~vIiDEaH 173 (400)
T 1s2m_A 161 LSDCSLFIMDEAD 173 (400)
T ss_dssp CTTCCEEEEESHH
T ss_pred cccCCEEEEeCch
Confidence 6777888775544
No 248
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=50.32 E-value=51 Score=38.90 Aligned_cols=74 Identities=9% Similarity=0.126 Sum_probs=41.5
Q ss_pred CCcEEEEeecHHHHHHHHHHH----HhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccc-----cC-Cc
Q 004103 381 GHRVLLFSQMTRLMDILEIYL----KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL-----GL-NL 450 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L----~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~-----GL-NL 450 (773)
+.++||.+.....+.-+...+ ...++++..++|+.+...+...+. . ..+ |++.+....-. .+ .+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--~--~~~--Ivv~Tp~~l~~~l~~~~~~~~ 369 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI--E--DSD--IIVVTPQILVNSFEDGTLTSL 369 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH--H--TCS--EEEECHHHHHHHHHSSSCCCG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh--C--CCC--EEEEchHHHHHHHHhcccccc
Confidence 678999999887665554444 444999999999997665433332 1 222 44444333321 13 56
Q ss_pred ccCCeeEEeC
Q 004103 451 QTADTVIIFD 460 (773)
Q Consensus 451 ~~ad~VI~~D 460 (773)
...+.||+=+
T Consensus 370 ~~~~~iViDE 379 (797)
T 4a2q_A 370 SIFTLMIFDE 379 (797)
T ss_dssp GGCSEEEETT
T ss_pred ccCCEEEEEC
Confidence 6677777733
No 249
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=50.23 E-value=22 Score=36.72 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=23.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 113 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP 113 (773)
++....|.|||.++..++..+... .++++++.-
T Consensus 102 ~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 102 MLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp EEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 356789999999888877776543 346666653
No 250
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=50.20 E-value=18 Score=38.31 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=24.5
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 113 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP 113 (773)
+.+.+|..++|+|||..|-+++..+ ..|++.+-.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL------DVPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEech
Confidence 4566889999999999887776554 246665543
No 251
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=49.21 E-value=7.6 Score=40.51 Aligned_cols=25 Identities=24% Similarity=0.192 Sum_probs=20.3
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~ 97 (773)
.+.+.+|..++|+|||..+-++...
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4678899999999999887666553
No 252
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=47.80 E-value=33 Score=44.76 Aligned_cols=55 Identities=16% Similarity=0.052 Sum_probs=39.6
Q ss_pred HHHHHH--hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHH
Q 004103 64 LQWMLS--LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 121 (773)
Q Consensus 64 v~~l~~--~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~ 121 (773)
+.+++. -+..+.-.+|+.++|+|||..++.++..+... .++++++.-.....+|.
T Consensus 720 LD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~---g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH
T ss_pred HHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECCCcHHHHH
Confidence 455552 23333345899999999999998888776542 45889998888888886
No 253
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=47.44 E-value=59 Score=28.09 Aligned_cols=74 Identities=11% Similarity=0.088 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcC--CCCCcEEEEEeccccccc-C-CcccCCeeEEeCCCCChhhHHHHhhhhhh
Q 004103 404 NDFKFLRLDGSTKTEERGTLLKQFNA--PDSPYFMFLLSTRAGGLG-L-NLQTADTVIIFDSDWNPQMDQQAEDRAHR 477 (773)
Q Consensus 404 ~g~~~~~i~G~~~~~eR~~~i~~Fn~--~~~~~~v~LlSt~agg~G-L-NL~~ad~VI~~D~~wNp~~~~Qa~gRa~R 477 (773)
..+..+.+|-.++...-.+++..++. ......+++++...-..- . ....+...-++.-|.++....+++.++.+
T Consensus 49 ~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 49 RPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp SCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 44555666655444334444444443 222334444443321111 0 11112222233345566666666665554
No 254
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=47.22 E-value=1.2e+02 Score=28.86 Aligned_cols=38 Identities=11% Similarity=-0.062 Sum_probs=27.4
Q ss_pred CCcEEEEeecHHHHHHHHHHHHh----C----CCeEEEEcCCCCHH
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKL----N----DFKFLRLDGSTKTE 418 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~----~----g~~~~~i~G~~~~~ 418 (773)
+.++||.+.....+.-+.+.+.. . ++.+..+.|+.+..
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 117 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQ 117 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHH
Confidence 56899999988776665554432 2 67888899987654
No 255
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=46.48 E-value=18 Score=42.79 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=17.4
Q ss_pred CCeEEecCCCCCHHHHHHHHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIA 96 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~ 96 (773)
.+.+|..+.|+|||+.+=+++.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999988766664
No 256
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=46.08 E-value=51 Score=42.35 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=32.7
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 120 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW 120 (773)
.+...+|+.++|+|||..++.++...... .++++++.-.....+.
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~---g~~VlyiS~Ees~~ql 775 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPI 775 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHc---CCCeEEEeccchHHHH
Confidence 33445889999999999999988877653 3478887765555443
No 257
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=46.02 E-value=27 Score=36.16 Aligned_cols=40 Identities=15% Similarity=0.097 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHhh----cCCCCeEEecCCCCCHHHHHHHHHH
Q 004103 57 RAYQLEGLQWMLSLF----NNNLNGILADEMGLGKTIQTIALIA 96 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~----~~~~~gILademGlGKTi~aiali~ 96 (773)
+...+..+..++... ....+.+|..+.|+|||..+-+++.
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 344555554444433 2234678899999999988766644
No 258
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=46.02 E-value=24 Score=29.26 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=10.8
Q ss_pred eCCCCChhhHHHHhhhhh
Q 004103 459 FDSDWNPQMDQQAEDRAH 476 (773)
Q Consensus 459 ~D~~wNp~~~~Qa~gRa~ 476 (773)
+..|.++....+++.++.
T Consensus 99 l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 99 LSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp CSSCSTTHHHHHHHHTTC
T ss_pred ccCCCCHHHHHHHHHHHh
Confidence 344666666666666554
No 259
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=45.79 E-value=48 Score=32.39 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=42.1
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEec-ccc-------ccc
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKL----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST-RAG-------GLG 447 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt-~ag-------g~G 447 (773)
.+.++||.+.....+..+.+.+.. .++.+..++|+.....+ ......... . ++++| ... ..+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~-I~v~Tp~~l~~~l~~~~~~ 170 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKF--D-ILVTTPNRLIYLLKQDPPG 170 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCC--C-EEEECHHHHHHHHHSSSCS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCC--C-EEEECHHHHHHHHHhCCCC
Confidence 456899999998877766666644 37777776664332111 011112222 2 45554 222 125
Q ss_pred CCcccCCeeEEeCC
Q 004103 448 LNLQTADTVIIFDS 461 (773)
Q Consensus 448 LNL~~ad~VI~~D~ 461 (773)
+++...+.||+=+.
T Consensus 171 ~~~~~~~~lViDEa 184 (245)
T 3dkp_A 171 IDLASVEWLVVDES 184 (245)
T ss_dssp CCCTTCCEEEESSH
T ss_pred cccccCcEEEEeCh
Confidence 67777877776443
No 260
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=45.47 E-value=2.5e+02 Score=28.46 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=46.6
Q ss_pred cCCcEEEEeecHHHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccc-----ccCCc
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG-----LGLNL 450 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg-----~GLNL 450 (773)
.+.++||.+.....++.+.+.+. ..++.+..++|+....+....+. . .+ |++.+....- ..+++
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~--~~--iiv~T~~~l~~~~~~~~~~~ 145 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK---N--AN--IVVGTPGRILDHINRGTLNL 145 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH---T--CS--EEEECHHHHHHHHHTTCSCT
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC---C--CC--EEEecHHHHHHHHHcCCccc
Confidence 46789999998877666665554 35788999999988765544443 2 22 3443333222 12456
Q ss_pred ccCCeeEEeCC
Q 004103 451 QTADTVIIFDS 461 (773)
Q Consensus 451 ~~ad~VI~~D~ 461 (773)
...+.||+=+.
T Consensus 146 ~~~~~iIiDEa 156 (367)
T 1hv8_A 146 KNVKYFILDEA 156 (367)
T ss_dssp TSCCEEEEETH
T ss_pred ccCCEEEEeCc
Confidence 67777776443
No 261
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=44.66 E-value=1.4e+02 Score=28.76 Aligned_cols=46 Identities=22% Similarity=0.163 Sum_probs=27.4
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHH-HhcCCCCCEEEEeCCcchHHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLL-ENKGVTGPHVIVAPKAVLPNWI 121 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~-~~~~~~gp~LIVvP~sll~qW~ 121 (773)
.+.-..|..+.|+|||..+-.++.... .. .+..+++.-.....+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~---~~~~~~~~~~~~~~~~~ 75 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLEERARDLR 75 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESSSCHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCeEEEEEccCCHHHHH
Confidence 344457788999999988766654333 22 23556666544444433
No 262
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=44.57 E-value=19 Score=36.00 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=19.6
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l 98 (773)
+.+.+|..++|+|||..+-+++..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4456889999999999887776643
No 263
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=44.48 E-value=1.6e+02 Score=28.67 Aligned_cols=76 Identities=7% Similarity=0.026 Sum_probs=45.4
Q ss_pred cCCcEEEEeecHHHHHHHHHHH----HhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccc-----ccCCc
Q 004103 380 SGHRVLLFSQMTRLMDILEIYL----KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG-----LGLNL 450 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L----~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg-----~GLNL 450 (773)
.+.++||.+..+..+..+.+.+ ...++.+..+.|+.+..+....+ .. ..+ |++.+....- ..+++
T Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~--Ivv~Tp~~l~~~l~~~~~~~ 172 (253)
T 1wrb_A 99 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV---QM-GCH--LLVATPGRLVDFIEKNKISL 172 (253)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH---SS-CCS--EEEECHHHHHHHHHTTSBCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---CC-CCC--EEEECHHHHHHHHHcCCCCh
Confidence 3468999999987766655544 34478888899988765543333 22 223 4444433322 13566
Q ss_pred ccCCeeEEeCC
Q 004103 451 QTADTVIIFDS 461 (773)
Q Consensus 451 ~~ad~VI~~D~ 461 (773)
...+.||+=+.
T Consensus 173 ~~~~~lViDEa 183 (253)
T 1wrb_A 173 EFCKYIVLDEA 183 (253)
T ss_dssp TTCCEEEEETH
T ss_pred hhCCEEEEeCH
Confidence 67777776443
No 264
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=43.17 E-value=15 Score=36.90 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=21.7
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhc
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENK 102 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~ 102 (773)
|.+-++|.|||+++++++..+...+
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~G 50 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNACG 50 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCC
Confidence 5578999999999999999988753
No 265
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=43.08 E-value=1.9e+02 Score=29.04 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=46.0
Q ss_pred CCcEEEEeecHHHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccc-----ccCCcc
Q 004103 381 GHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG-----LGLNLQ 451 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg-----~GLNL~ 451 (773)
+.++||.+.....+..+.+.+. ..+..+..++|+.+..+.... +.. .+ |++.+..... ..+++.
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~--i~v~T~~~l~~~~~~~~~~~~ 128 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VRN--AD--IVVATPGRLLDLWSKGVIDLS 128 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HTT--CS--EEEECHHHHHHHHHTTSCCGG
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cCC--CC--EEEECHHHHHHHHHcCCcchh
Confidence 6789999999877776666664 446889999999887655433 332 22 3444433321 234566
Q ss_pred cCCeeEEeC
Q 004103 452 TADTVIIFD 460 (773)
Q Consensus 452 ~ad~VI~~D 460 (773)
..+.||+=+
T Consensus 129 ~~~~iViDE 137 (337)
T 2z0m_A 129 SFEIVIIDE 137 (337)
T ss_dssp GCSEEEEES
T ss_pred hCcEEEEEC
Confidence 677777644
No 266
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=42.95 E-value=15 Score=36.38 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhc
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENK 102 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~ 102 (773)
|-+-++|.|||+++++++..+...+
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G 33 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQN 33 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCC
Confidence 4567899999999999999988763
No 267
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=42.91 E-value=31 Score=30.17 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEee-cHHHHHHHHHHHHhCCCeEEEEcCCCCH
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQ-MTRLMDILEIYLKLNDFKFLRLDGSTKT 417 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq-~~~~ld~L~~~L~~~g~~~~~i~G~~~~ 417 (773)
+++..+...+..+...+.++||||. .-.........|...|+++..++|++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 73 YKLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp GGHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred ccHHHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 3444445555554333279999994 5555667888889999999999998764
No 268
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=42.81 E-value=42 Score=28.66 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=17.2
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCCCeEE
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLNDFKFL 409 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~ 409 (773)
+.+|||..........+...|...|+.+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~ 34 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVE 34 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEE
Confidence 34566666666666666666666665544
No 269
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=42.56 E-value=36 Score=28.94 Aligned_cols=96 Identities=10% Similarity=-0.030 Sum_probs=49.8
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCC--CCCcEEEEEecccccccCCcc--cCCe
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAP--DSPYFMFLLSTRAGGLGLNLQ--TADT 455 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~--~~~~~v~LlSt~agg~GLNL~--~ad~ 455 (773)
.|..+..+......++.+ ....+..+.+|-.++..+-..+++..+.. .....+++++......-.... .|+.
T Consensus 26 ~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~ 101 (127)
T 3i42_A 26 LGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF 101 (127)
T ss_dssp TTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE
T ss_pred cCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH
Confidence 355666665554444444 34567778887666554445555555432 333455566544322211111 1333
Q ss_pred eEEeCCCCChhhHHHHhhhhhhcCCc
Q 004103 456 VIIFDSDWNPQMDQQAEDRAHRIGQK 481 (773)
Q Consensus 456 VI~~D~~wNp~~~~Qa~gRa~RiGQ~ 481 (773)
++.-|.++....+++.++++-++.
T Consensus 102 --~l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 102 --YLEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp --EEESSCCHHHHHHHHHHHC-----
T ss_pred --heeCCCCHHHHHHHHHHhhccCCC
Confidence 445678888888888888775543
No 270
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=42.20 E-value=27 Score=34.62 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.3
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHh
Q 004103 75 LNGILADEMGLGKTIQTIALIAYLLEN 101 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l~~~ 101 (773)
.+.++....|.|||..++.++..+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 346788999999999999999988875
No 271
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=42.14 E-value=1e+02 Score=26.40 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=12.9
Q ss_pred CcEEEEeecHHHHHHHHHHHHhCCCe
Q 004103 382 HRVLLFSQMTRLMDILEIYLKLNDFK 407 (773)
Q Consensus 382 ~kvLIFsq~~~~ld~L~~~L~~~g~~ 407 (773)
.++||........+.+...|...|+.
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~~ 33 (142)
T 3cg4_A 8 GDVMIVDDDAHVRIAVKTILSDAGFH 33 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCeE
Confidence 34555555555555555555544443
No 272
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=41.86 E-value=1.9e+02 Score=30.26 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=47.1
Q ss_pred cCCcEEEEeecHHHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-----ccc-ccCC
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-----AGG-LGLN 449 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-----agg-~GLN 449 (773)
.+.++||.+.....+..+.+.+. ..++.+..+.|+.+..+....+.. ..+ ++++|. ... ..++
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~---ivv~Tp~~l~~~l~~~~~~ 176 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY----GQH---VVAGTPGRVFDMIRRRSLR 176 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH----CCS---EEEECHHHHHHHHHTTSSC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc----CCC---EEEcCHHHHHHHHHhCCcc
Confidence 46799999999877776666554 346888999999987766554432 122 455552 111 2355
Q ss_pred cccCCeeEEeC
Q 004103 450 LQTADTVIIFD 460 (773)
Q Consensus 450 L~~ad~VI~~D 460 (773)
+...+.||+=+
T Consensus 177 ~~~~~~vViDE 187 (410)
T 2j0s_A 177 TRAIKMLVLDE 187 (410)
T ss_dssp CTTCCEEEEET
T ss_pred HhheeEEEEcc
Confidence 66677777643
No 273
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=41.70 E-value=1.6e+02 Score=31.61 Aligned_cols=74 Identities=11% Similarity=0.074 Sum_probs=47.1
Q ss_pred CCcEEEEeecHHHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-cc----c-ccCCc
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKL----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-AG----G-LGLNL 450 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-ag----g-~GLNL 450 (773)
+.++||.+..+..+.-+.+.+.. .++.+..++|+.+..+....+ .. ..+ ++++|. .. . ..+++
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~---Ivv~Tp~~l~~~l~~~~~~l 201 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI---TR-GCH---VVIATPGRLLDFVDRTFITF 201 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH---TT-CCS---EEEECHHHHHHHHHTTSCCC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh---hc-CCC---EEEEChHHHHHHHHhCCccc
Confidence 56899999998877766665543 467888899999876554433 22 223 455543 22 1 13567
Q ss_pred ccCCeeEEeCC
Q 004103 451 QTADTVIIFDS 461 (773)
Q Consensus 451 ~~ad~VI~~D~ 461 (773)
...+.||+=+.
T Consensus 202 ~~~~~lVlDEa 212 (434)
T 2db3_A 202 EDTRFVVLDEA 212 (434)
T ss_dssp TTCCEEEEETH
T ss_pred ccCCeEEEccH
Confidence 77888877443
No 274
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=41.21 E-value=97 Score=26.31 Aligned_cols=57 Identities=23% Similarity=0.186 Sum_probs=40.8
Q ss_pred HHHHHhhhcCCcEEEEee------cHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcC
Q 004103 372 RLLPKLRKSGHRVLLFSQ------MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNA 429 (773)
Q Consensus 372 ~ll~~l~~~g~kvLIFsq------~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~ 429 (773)
..+.++.. .++|+||+. +-........+|...|++|..++=....+.+..+.+....
T Consensus 9 ~~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~ 71 (109)
T 3ipz_A 9 DTLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNW 71 (109)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTC
T ss_pred HHHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCC
Confidence 33444433 568999998 5678899999999999999888766666666665554443
No 275
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=41.20 E-value=17 Score=36.72 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.6
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhc
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENK 102 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~ 102 (773)
|.+-++|.|||+++++++..+...+
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~G 55 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQAG 55 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCC
Confidence 5578999999999999999988764
No 276
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=41.14 E-value=24 Score=39.49 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHH
Q 004103 56 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA 96 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~ 96 (773)
+.+.++..+...+. .+.+.+++.++|+|||.+.-+++.
T Consensus 245 ~~~~~l~~l~~~v~---~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 245 VPSGVLAYLWLAIE---HKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp SCHHHHHHHHHHHH---TTCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHHHHHHHh
Confidence 44555566655553 666778899999999976544443
No 277
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=40.53 E-value=35 Score=29.10 Aligned_cols=39 Identities=5% Similarity=0.140 Sum_probs=33.0
Q ss_pred hcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCH
Q 004103 379 KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKT 417 (773)
Q Consensus 379 ~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~ 417 (773)
..+.+++|||..-.........|...|+++..++|++..
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 356789999998777888889999999999999998653
No 278
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=40.47 E-value=79 Score=34.71 Aligned_cols=118 Identities=11% Similarity=0.030 Sum_probs=68.8
Q ss_pred EecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhh
Q 004103 299 KCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLR 378 (773)
Q Consensus 299 ~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~ 378 (773)
...+++.|...+..+.......+.... .+||-......+....
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~t-------------------------------------GsGKT~~~~~~~~~~~ 153 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPT-------------------------------------SAGRSLIQALLARYYL 153 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCS-------------------------------------TTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCC-------------------------------------CCCHHHHHHHHHHHHH
Confidence 458999999999888754322222222 3444444333333332
Q ss_pred hcC-CcEEEEeecHHHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccccc--CCcc
Q 004103 379 KSG-HRVLLFSQMTRLMDILEIYLKLN----DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLG--LNLQ 451 (773)
Q Consensus 379 ~~g-~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~G--LNL~ 451 (773)
..+ .++||.+..+..++-+.+.+... +..+..++|+.+..++ ..+..+ |++.+....... ..+.
T Consensus 154 ~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~--I~i~T~~~l~~~~~~~~~ 224 (510)
T 2oca_A 154 ENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAP--VVVGTWQTVVKQPKEWFS 224 (510)
T ss_dssp HHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCS--EEEEEHHHHTTSCGGGGG
T ss_pred hCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCc--EEEEeHHHHhhchhhhhh
Confidence 223 49999999988877777777643 3578888888775443 122333 555555544332 3345
Q ss_pred cCCeeEEeCCC
Q 004103 452 TADTVIIFDSD 462 (773)
Q Consensus 452 ~ad~VI~~D~~ 462 (773)
..+.||+=+.+
T Consensus 225 ~~~liIiDE~H 235 (510)
T 2oca_A 225 QFGMMMNDECH 235 (510)
T ss_dssp GEEEEEEETGG
T ss_pred cCCEEEEECCc
Confidence 56667765444
No 279
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=40.37 E-value=54 Score=30.96 Aligned_cols=38 Identities=13% Similarity=0.282 Sum_probs=24.3
Q ss_pred CCcEEEEeecHHHHHH-HHHHHH---hCCCeEEEEcCCCCHH
Q 004103 381 GHRVLLFSQMTRLMDI-LEIYLK---LNDFKFLRLDGSTKTE 418 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~-L~~~L~---~~g~~~~~i~G~~~~~ 418 (773)
+.++||.+.....++. +.+.+. ..++.+..++|+....
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~ 123 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLK 123 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CC
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccc
Confidence 6799999998877555 444332 2378889999876543
No 280
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=40.27 E-value=19 Score=42.82 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=17.8
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIA 96 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~ 96 (773)
.+.+.+|.-+.|+|||..+-+++.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 344568899999999987765543
No 281
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=40.26 E-value=86 Score=34.90 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=24.7
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 113 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP 113 (773)
+++...|+|||.++..++.++... ..++++|..
T Consensus 105 ~ivG~~GvGKTTl~~kLA~~l~~~---G~kVllVd~ 137 (504)
T 2j37_W 105 MFVGLQGSGKTTTCSKLAYYYQRK---GWKTCLICA 137 (504)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEec
Confidence 456778999999999998888754 235666665
No 282
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=40.21 E-value=1.6e+02 Score=30.58 Aligned_cols=32 Identities=28% Similarity=0.272 Sum_probs=20.6
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
.+.-+.|+|||.++-.++..+... .|.++++.
T Consensus 133 ~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g 164 (328)
T 3e70_C 133 MFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAA 164 (328)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEe
Confidence 567899999997765555544432 34555553
No 283
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=40.12 E-value=32 Score=33.15 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 113 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP 113 (773)
|..-..|.|||.+++.++..+...+ .+++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G---~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAG---YRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT---CCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEcc
Confidence 4556789999999999998887652 36777655
No 284
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=40.02 E-value=1.1e+02 Score=25.79 Aligned_cols=96 Identities=7% Similarity=-0.126 Sum_probs=50.2
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCC--CCCcEEEEEecccccccCCcccCCeeE
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAP--DSPYFMFLLSTRAGGLGLNLQTADTVI 457 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~--~~~~~v~LlSt~agg~GLNL~~ad~VI 457 (773)
.+..+..+......++.+ ....+..+.++-.++..+-..++...+.. .....+++++...-..-.....+...-
T Consensus 26 ~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~ 101 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDA 101 (133)
T ss_dssp TTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSE
T ss_pred CCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCce
Confidence 466666666555544443 34567788888766654445555555432 123345666654321112211222222
Q ss_pred EeCCCCChhhHHHHhhhhhhcC
Q 004103 458 IFDSDWNPQMDQQAEDRAHRIG 479 (773)
Q Consensus 458 ~~D~~wNp~~~~Qa~gRa~RiG 479 (773)
++--|.++....+++.++.+-.
T Consensus 102 ~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 102 YLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp EEESSCCHHHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHhhh
Confidence 3445788888888888776543
No 285
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=39.76 E-value=1.9e+02 Score=30.22 Aligned_cols=74 Identities=9% Similarity=0.006 Sum_probs=46.2
Q ss_pred CCcEEEEeecHHHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-ccc-----ccCCc
Q 004103 381 GHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-AGG-----LGLNL 450 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-agg-----~GLNL 450 (773)
+.++||.+.....+.-+.+.+. ..++.+..++|+.+..+....+ .. ..+ ++++|. ... ..+++
T Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~---I~v~Tp~~l~~~l~~~~~~~ 173 (417)
T 2i4i_A 101 YPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL---ER-GCH---LLVATPGRLVDMMERGKIGL 173 (417)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH---TT-CCS---EEEECHHHHHHHHHTTSBCC
T ss_pred CccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh---hC-CCC---EEEEChHHHHHHHHcCCcCh
Confidence 3579999999877666655553 4578899999998876554333 22 223 444543 221 13566
Q ss_pred ccCCeeEEeCC
Q 004103 451 QTADTVIIFDS 461 (773)
Q Consensus 451 ~~ad~VI~~D~ 461 (773)
...+.||+=+.
T Consensus 174 ~~~~~iViDEa 184 (417)
T 2i4i_A 174 DFCKYLVLDEA 184 (417)
T ss_dssp TTCCEEEESSH
T ss_pred hhCcEEEEECh
Confidence 67777776443
No 286
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=39.58 E-value=49 Score=34.41 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 004103 83 MGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 83 mGlGKTi~aiali~~l~~ 100 (773)
=|+|||=.+++++..|..
T Consensus 47 GGTGKTP~vi~L~~~L~~ 64 (315)
T 4ehx_A 47 GGSGKTSFVMYLADLLKD 64 (315)
T ss_dssp SCCSHHHHHHHHHHHTTT
T ss_pred CCCChHHHHHHHHHHHhh
Confidence 489999999999987743
No 287
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=39.16 E-value=82 Score=26.71 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=41.4
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccc-----ccC-CcccCCeeEEeCCCCChhhHHHHhhhhhhcC
Q 004103 406 FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG-----LGL-NLQTADTVIIFDSDWNPQMDQQAEDRAHRIG 479 (773)
Q Consensus 406 ~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg-----~GL-NL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiG 479 (773)
+..+.+|-.++...-.++++.++.......+++++..... ..+ ....+...-++.-|.++....+++.++..-+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 6677777777665566666666543344456666544321 100 1112222334456778888888888776654
Q ss_pred Cc
Q 004103 480 QK 481 (773)
Q Consensus 480 Q~ 481 (773)
+.
T Consensus 127 ~~ 128 (135)
T 3eqz_A 127 AE 128 (135)
T ss_dssp --
T ss_pred cc
Confidence 43
No 288
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=38.86 E-value=1.2e+02 Score=26.00 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=36.7
Q ss_pred CCcEEEEee------cHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhc
Q 004103 381 GHRVLLFSQ------MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFN 428 (773)
Q Consensus 381 g~kvLIFsq------~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn 428 (773)
.++|+||+. +-........+|...|++|..++=....+.+..+.+.-.
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g 68 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSS 68 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHC
Confidence 569999995 557788889999999999988887666666666554433
No 289
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=38.77 E-value=46 Score=29.47 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=36.9
Q ss_pred EEEEeecH-------HHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhc
Q 004103 384 VLLFSQMT-------RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFN 428 (773)
Q Consensus 384 vLIFsq~~-------~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn 428 (773)
|.||+... .-...+..+|..+|++|..++-+...+.|.+++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 55665533 3347888999999999999999999999999999984
No 290
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=38.01 E-value=1.1e+02 Score=34.15 Aligned_cols=76 Identities=11% Similarity=0.204 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC-CceEEEecCC--hhHHHHHHHHHHhhcCCccEEEc
Q 004103 87 KTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SIAAVVYDGR--PDERKAMREEFFSERGRFNVLIT 162 (773)
Q Consensus 87 KTi~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p-~~~v~~~~g~--~~~r~~~~~~~~~~~~~~~VvIt 162 (773)
+....+..+...+......+++||.|++ ..+......+.+.++ +..+..++|. ...|..+...+.. +..+|+|+
T Consensus 321 ~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vLva 398 (563)
T 3i5x_A 321 SIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGILVC 398 (563)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEEE
T ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc--CCCCEEEE
Confidence 3334444454444444556789999998 556666777776655 6788888885 4556666665544 67889999
Q ss_pred CH
Q 004103 163 HY 164 (773)
Q Consensus 163 Ty 164 (773)
|-
T Consensus 399 T~ 400 (563)
T 3i5x_A 399 TD 400 (563)
T ss_dssp CG
T ss_pred cc
Confidence 84
No 291
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=37.33 E-value=96 Score=34.85 Aligned_cols=73 Identities=11% Similarity=0.210 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcC-CceEEEecCC--hhHHHHHHHHHHhhcCCccEEEcCH
Q 004103 90 QTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SIAAVVYDGR--PDERKAMREEFFSERGRFNVLITHY 164 (773)
Q Consensus 90 ~aiali~~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p-~~~v~~~~g~--~~~r~~~~~~~~~~~~~~~VvItTy 164 (773)
..+..+...+......+++||.|++ ..+......+.+.++ +..+..++|. ..+|......+.. +..+|+|+|-
T Consensus 273 ~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~--g~~~vLVaT~ 349 (579)
T 3sqw_A 273 AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGILVCTD 349 (579)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEEECG
T ss_pred HHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc--CCCeEEEEcc
Confidence 3444444444443455689999998 556667777777655 6788888886 4556666665544 6788999884
No 292
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=36.96 E-value=77 Score=29.74 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=35.6
Q ss_pred HHHHhcCCCCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCCh--hHHHHHHHHHHhhcCCccEEEcC
Q 004103 97 YLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRP--DERKAMREEFFSERGRFNVLITH 163 (773)
Q Consensus 97 ~l~~~~~~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~~--~~r~~~~~~~~~~~~~~~VvItT 163 (773)
.++......+++||.|+. ..+......+... +..+..++|.. .+|......+.. +...|+|+|
T Consensus 38 ~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f~~--g~~~vLvaT 103 (185)
T 2jgn_A 38 DLLNATGKDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 103 (185)
T ss_dssp HHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC--------CHHHHHHHH--TSSSEEEEE
T ss_pred HHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEc
Confidence 333333345689999998 4444455555543 56777888754 344445544433 678899988
No 293
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=36.56 E-value=1.3e+02 Score=27.20 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=37.2
Q ss_pred CCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCC--hhHHHHHHHHHHhhcCCccEEEcC
Q 004103 105 TGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITH 163 (773)
Q Consensus 105 ~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~~~VvItT 163 (773)
.+++||.|+. ..+......+... +..+..++|. ..+|......+.. +..+|+|+|
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~--g~~~vlv~T 92 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKR--GEYRYLVAT 92 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEEEC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEC
Confidence 4589999998 5555555666554 4677788875 4455555555543 678899988
No 294
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=36.51 E-value=1.4e+02 Score=27.38 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=37.6
Q ss_pred CCCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCC--hhHHHHHHHHHHhhcCCccEEEcC
Q 004103 104 VTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITH 163 (773)
Q Consensus 104 ~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~~~VvItT 163 (773)
..+++||.|+. ..+......+... +..+..++|. ..+|......+.. +...|+|+|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~--g~~~vLvaT 88 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKD--FQRRILVAT 88 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEEES
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHC--CCCcEEEEC
Confidence 34589999998 5555566666654 4667778875 4455555555543 678899988
No 295
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=35.97 E-value=3.3e+02 Score=28.19 Aligned_cols=75 Identities=8% Similarity=0.062 Sum_probs=45.6
Q ss_pred cCCcEEEEeecHHHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-c----c-cccCC
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-A----G-GLGLN 449 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-a----g-g~GLN 449 (773)
.+.++||.+.....+..+.+.+. ..+..+..+.|+....... .....+..+ ++++|. . . ...++
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---iiv~T~~~l~~~l~~~~~~ 180 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEV---QKLQMEAPH---IIVGTPGRVFDMLNRRYLS 180 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHH---HHHTTTCCS---EEEECHHHHHHHHHHTSSC
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHH---HHHhcCCCC---EEEECHHHHHHHHHcCCcc
Confidence 46689999998877666555554 4578888888888765443 334433444 455552 1 1 12345
Q ss_pred cccCCeeEEeC
Q 004103 450 LQTADTVIIFD 460 (773)
Q Consensus 450 L~~ad~VI~~D 460 (773)
+...+.||+=+
T Consensus 181 ~~~~~~vViDE 191 (414)
T 3eiq_A 181 PKYIKMFVLDE 191 (414)
T ss_dssp STTCCEEEECS
T ss_pred cccCcEEEEEC
Confidence 66667666644
No 296
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=35.52 E-value=50 Score=36.30 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 58 AYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 58 pyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~ 100 (773)
...+..+..++.. ....+.+|..++|+|||..+-+++..+..
T Consensus 186 ~~~i~~l~~~l~r-~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 186 SKEIQRVIEVLSR-RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HHHHHHHHHHHHC-SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-cCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4444444333332 33445689999999999998777766543
No 297
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=35.37 E-value=2.1e+02 Score=24.32 Aligned_cols=90 Identities=11% Similarity=0.042 Sum_probs=46.2
Q ss_pred CCcEEEEeecHHHHHHHHHHHHh-CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEe-cccccccCCcccCCeeEE
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKL-NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS-TRAGGLGLNLQTADTVII 458 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~-~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlS-t~agg~GLNL~~ad~VI~ 458 (773)
|..+..+......+.. +.. ..+..+.++-.++...-.+++...+.......+++++ ... .... .... ..-+
T Consensus 39 g~~v~~~~~~~~al~~----l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~-~~~~-~~~~-~~~~ 111 (138)
T 2b4a_A 39 GAEVTVHPSGSAFFQH----RSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRH-ELIE-SSEH-NLSY 111 (138)
T ss_dssp TCEEEEESSHHHHHHT----GGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC---CCC-CSSS-CEEE
T ss_pred CCEEEEeCCHHHHHHH----HHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC-CHHH-HHHH-HHhe
Confidence 5555544443333332 233 4566777776665444455666665533345566665 332 2222 2222 2223
Q ss_pred eCCCCChhhHHHHhhhhhh
Q 004103 459 FDSDWNPQMDQQAEDRAHR 477 (773)
Q Consensus 459 ~D~~wNp~~~~Qa~gRa~R 477 (773)
+.-|.++....+++.++.+
T Consensus 112 l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 112 LQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp EESSCCHHHHHHHHHHTCC
T ss_pred eeCCCCHHHHHHHHHHHHH
Confidence 3457788888888877654
No 298
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=35.09 E-value=38 Score=34.46 Aligned_cols=23 Identities=26% Similarity=0.062 Sum_probs=18.7
Q ss_pred CCe-EEecCCCCCHHHHHHHHHHH
Q 004103 75 LNG-ILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 75 ~~g-ILademGlGKTi~aiali~~ 97 (773)
.++ +|..+.|+|||+.+.+++..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHhh
Confidence 444 67899999999999888764
No 299
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=34.74 E-value=17 Score=40.66 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=20.9
Q ss_pred hcCCCCeEEecCCCCCHHHHHHHHHHH
Q 004103 71 FNNNLNGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 71 ~~~~~~gILademGlGKTi~aiali~~ 97 (773)
...+.+.+|..++|+|||..|-++...
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGGG
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHHH
Confidence 335678899999999999887666543
No 300
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=34.74 E-value=22 Score=37.86 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=17.7
Q ss_pred HhhcCCCCe-EEe-cCCCCCHHHHHHH
Q 004103 69 SLFNNNLNG-ILA-DEMGLGKTIQTIA 93 (773)
Q Consensus 69 ~~~~~~~~g-ILa-demGlGKTi~aia 93 (773)
..+.++.+| |+| ..+|+|||.++..
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTMLG 104 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHHHB
T ss_pred hhccCCceeEEEeeCCCCCCCCEEEec
Confidence 334456666 555 7999999998854
No 301
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=34.64 E-value=99 Score=35.44 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=44.8
Q ss_pred hcchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcC
Q 004103 363 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDG 413 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G 413 (773)
.+||-..+..++..+...+.+|||-+.....+|.|.+.|...+.+++|+..
T Consensus 215 GTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG~ 265 (646)
T 4b3f_X 215 GTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGH 265 (646)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECSC
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEecc
Confidence 477888888888888888999999999999999999999989999988743
No 302
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=34.54 E-value=35 Score=36.16 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=19.7
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l 98 (773)
..+.+|..++|+|||..|-+++..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4457889999999998887776544
No 303
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=34.46 E-value=1.9e+02 Score=24.98 Aligned_cols=49 Identities=14% Similarity=0.032 Sum_probs=37.0
Q ss_pred CCcEEEEee------cHHHHHHHHHHHHhCCCe---EEEEcCCCCHHHHHHHHHhhcC
Q 004103 381 GHRVLLFSQ------MTRLMDILEIYLKLNDFK---FLRLDGSTKTEERGTLLKQFNA 429 (773)
Q Consensus 381 g~kvLIFsq------~~~~ld~L~~~L~~~g~~---~~~i~G~~~~~eR~~~i~~Fn~ 429 (773)
.++|+||+. +-........+|...|++ |..++=....+.|..+.+....
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~ 72 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEW 72 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTC
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCC
Confidence 568999998 467788888899889998 8888776676666665554433
No 304
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=34.25 E-value=26 Score=40.57 Aligned_cols=76 Identities=13% Similarity=0.172 Sum_probs=43.9
Q ss_pred CCcEEEEeecHHHHHHH-HHHHHhC---CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccc----------
Q 004103 381 GHRVLLFSQMTRLMDIL-EIYLKLN---DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL---------- 446 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L-~~~L~~~---g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~---------- 446 (773)
+.++||.+.....+.-+ .+.|... ++.+..++|+.+..++...+. . ..+ |+++++..+..
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~--~--~~~--Ilv~Tp~~L~~~l~~~~~~~~ 129 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV--K--SCD--IIISTAQILENSLLNLENGED 129 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH--H--SCS--EEEEEHHHHHHHTC-------
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh--c--CCC--EEEECHHHHHHHHhccccccc
Confidence 37899999988766655 5555433 389999999987654433332 1 223 55666555443
Q ss_pred -cCCcccCCeeEEeCCC
Q 004103 447 -GLNLQTADTVIIFDSD 462 (773)
Q Consensus 447 -GLNL~~ad~VI~~D~~ 462 (773)
.+.+...+.||+=+.+
T Consensus 130 ~~~~~~~~~lvViDEaH 146 (699)
T 4gl2_A 130 AGVQLSDFSLIIIDECH 146 (699)
T ss_dssp -CCCGGGCSEEEEESGG
T ss_pred cceecccCcEEEEECcc
Confidence 2466778888874443
No 305
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=33.66 E-value=54 Score=34.90 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=31.1
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 120 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW 120 (773)
.+.+.++..++|+|||..+-.++..+.. ..++++|+=|..-...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~ 78 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM---QGSRVIIIDPEREYKEM 78 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEESSCCSHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH---CCCEEEEEeCCcCHHHH
Confidence 4667889999999999877666655543 23467777787544443
No 306
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=33.46 E-value=1.3e+02 Score=25.15 Aligned_cols=59 Identities=22% Similarity=0.207 Sum_probs=41.6
Q ss_pred HHHhhhcCCcEEEEee------cHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCC
Q 004103 374 LPKLRKSGHRVLLFSQ------MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSP 433 (773)
Q Consensus 374 l~~l~~~g~kvLIFsq------~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~ 433 (773)
+..+.. .++|+||+. +-.....+..+|...+++|..++-....+.+..+...+.....+
T Consensus 10 ~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP 74 (105)
T 2yan_A 10 LKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYP 74 (105)
T ss_dssp HHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSC
T ss_pred HHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCC
Confidence 334333 347999984 55678888888988899998888777777777766666544444
No 307
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=33.27 E-value=15 Score=35.57 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=17.1
Q ss_pred eEEecCCCCCHHHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l 98 (773)
.++...+|+|||..|+..+..+
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4678899999999887765443
No 308
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=33.13 E-value=83 Score=37.94 Aligned_cols=75 Identities=9% Similarity=0.127 Sum_probs=41.4
Q ss_pred CCcEEEEeecHHHHHHHH----HHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccc-----cC-Cc
Q 004103 381 GHRVLLFSQMTRLMDILE----IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL-----GL-NL 450 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~----~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~-----GL-NL 450 (773)
+.++||.+.....+.-+. .++...++++..++|+.+...+...+.. ..+ |++.++...-. .+ .+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~----~~~--IvI~Tp~~L~~~l~~~~~~~l 369 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSD--IIVVTPQILVNSFEDGTLTSL 369 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHH----HCS--EEEECHHHHHHHHHSSSCCCG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhcc----CCC--EEEecHHHHHHHHHcCccccc
Confidence 678999999886655544 4444459999999999876553322221 122 44444333321 12 56
Q ss_pred ccCCeeEEeCC
Q 004103 451 QTADTVIIFDS 461 (773)
Q Consensus 451 ~~ad~VI~~D~ 461 (773)
...+.||+=+.
T Consensus 370 ~~~~liViDEa 380 (936)
T 4a2w_A 370 SIFTLMIFDEC 380 (936)
T ss_dssp GGCSEEEEETG
T ss_pred cCCCEEEEECc
Confidence 66777777443
No 309
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=32.76 E-value=29 Score=32.32 Aligned_cols=25 Identities=32% Similarity=0.161 Sum_probs=19.0
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l 98 (773)
....+|...+|+|||.++-.++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3446788999999998887766544
No 310
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=32.70 E-value=34 Score=37.05 Aligned_cols=40 Identities=23% Similarity=0.212 Sum_probs=28.8
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 115 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~s 115 (773)
...+.++...+|+|||...-.++..++.. ..+++|+=|+.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~---g~~viv~Dpkg 91 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLR---GDRMVIVDPNG 91 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHT---TCEEEEEEETT
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEeCCC
Confidence 35678889999999998765566666553 24677777873
No 311
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=32.54 E-value=58 Score=32.06 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=17.1
Q ss_pred CeEEecCCCCCHHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~ 97 (773)
+.+|..+.|+|||..+-+++..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999877665543
No 312
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=32.45 E-value=2.1e+02 Score=31.76 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=20.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEE
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 111 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIV 111 (773)
.|....|+|||..+-.++..+... .|.++|+
T Consensus 297 ~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~ 327 (503)
T 2yhs_A 297 LMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLA 327 (503)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred EEECCCcccHHHHHHHHHHHhhhc---CCeEEEe
Confidence 467889999997765555444332 4566665
No 313
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=32.31 E-value=1.5e+02 Score=28.41 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=36.7
Q ss_pred CCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCC--hhHHHHHHHHHHhhcCCccEEEcC
Q 004103 105 TGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITH 163 (773)
Q Consensus 105 ~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~~~VvItT 163 (773)
.+++||.||. ..+......+.+. +..+..++|. ..+|......+.. +..+|+|+|
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~--g~~~vlvaT 88 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQ--GEVRVLVAT 88 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHS--SSCCEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHC--CCCeEEEec
Confidence 4689999998 4455555555553 4667778776 4455555555443 678899998
No 314
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=32.04 E-value=1.4e+02 Score=28.04 Aligned_cols=55 Identities=27% Similarity=0.325 Sum_probs=38.3
Q ss_pred CCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCC--hhHHHHHHHHHHhhcCCccEEEcC
Q 004103 105 TGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITH 163 (773)
Q Consensus 105 ~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~~~VvItT 163 (773)
.+++||.|+. ..+......+... +..+..++|. ..+|......+.. +..+|+|+|
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~--g~~~vLvaT 111 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGGKDQEERTKAIEAFRE--GKKDVLVAT 111 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHH--TSCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhc--CCCEEEEEc
Confidence 4589999998 5556666666554 4677778886 4556655555544 678899999
No 315
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=31.93 E-value=44 Score=32.39 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=24.8
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 113 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP 113 (773)
|....-|.|||.+++.++..+... ..++|+|=.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~---g~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDR---GRKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhc---CCeEEEEeC
Confidence 445678999999999999888764 236777753
No 316
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=31.85 E-value=35 Score=31.88 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=19.0
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l 98 (773)
.+...+|...+|+|||.++-.+...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44456788999999998876665443
No 317
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=31.85 E-value=1.8e+02 Score=26.32 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=37.0
Q ss_pred CCCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCC--hhHHHHHHHHHHhhcCCccEEEcC
Q 004103 104 VTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITH 163 (773)
Q Consensus 104 ~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~~~VvItT 163 (773)
..+++||.|+. ..+......+... +..+..++|. ..+|......+.. +...|+|+|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T 87 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRS--GSSRILIST 87 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHc--CCCEEEEEc
Confidence 34689999998 5555555566553 4567777775 4455555555443 677899988
No 318
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=30.91 E-value=34 Score=32.48 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=19.8
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 73 NNLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 73 ~~~~gILademGlGKTi~aiali~~l 98 (773)
.+...+|.-.+|+|||.++-.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34456789999999998887666544
No 319
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=30.32 E-value=1.3e+02 Score=34.56 Aligned_cols=75 Identities=11% Similarity=0.221 Sum_probs=44.2
Q ss_pred CcEEEEeecHHHHHHHHHHH----HhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccccc----cc-C-Ccc
Q 004103 382 HRVLLFSQMTRLMDILEIYL----KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG----LG-L-NLQ 451 (773)
Q Consensus 382 ~kvLIFsq~~~~ld~L~~~L----~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg----~G-L-NL~ 451 (773)
.++||.+.....+.-..+.+ ...++.+..++|+++...+...+. . ..+ |++++...+- .| + ++.
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--~--~~~--Iiv~Tp~~L~~~l~~~~~~~l~ 135 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV--E--NND--IIILTPQILVNNLKKGTIPSLS 135 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH--H--TCS--EEEECHHHHHHHHHTTSSCCGG
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc--c--CCC--EEEECHHHHHHHHhcCcccccc
Confidence 68999998876655544444 334899999999886533322221 1 222 4455544332 22 3 577
Q ss_pred cCCeeEEeCCC
Q 004103 452 TADTVIIFDSD 462 (773)
Q Consensus 452 ~ad~VI~~D~~ 462 (773)
..+.||+=+.+
T Consensus 136 ~~~~vViDEaH 146 (696)
T 2ykg_A 136 IFTLMIFDECH 146 (696)
T ss_dssp GCSEEEEETGG
T ss_pred cccEEEEeCCC
Confidence 78888885443
No 320
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=30.26 E-value=1.9e+02 Score=31.76 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 62 EGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 62 ~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~ 100 (773)
.++..|... ..+...+|..+.|+|||..+..++.....
T Consensus 140 r~ID~L~pi-~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 140 KVVDLLAPY-IKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp HHHHHHSCE-ETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHhhh-ccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 356655433 34556788899999999888777766544
No 321
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=30.10 E-value=53 Score=32.45 Aligned_cols=32 Identities=28% Similarity=0.190 Sum_probs=24.7
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
|....-|.|||.+++.++..+... ..++|+|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~---g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQL---GHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhC---CCcEEEEE
Confidence 456678999999999999888764 23677774
No 322
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=29.79 E-value=2.5e+02 Score=25.82 Aligned_cols=66 Identities=12% Similarity=0.166 Sum_probs=48.9
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEe
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIF 459 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~ 459 (773)
....+.|.+........+...|...|+++..+++... .|. .. +.++|--..-|+- .++||++
T Consensus 60 g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~~---~~---v~v~t~~~~KGlE---f~~V~~~ 121 (174)
T 3dmn_A 60 ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RLA---PG---VIVVPSFLAKGLE---FDAVIVW 121 (174)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CCC---SS---EEEEEGGGCTTCC---EEEEEEE
T ss_pred CCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------ccC---CC---eEEEEccccCCcC---CCEEEEe
Confidence 3567888888889999999999999999988876542 122 22 4566666677854 7899998
Q ss_pred CCCC
Q 004103 460 DSDW 463 (773)
Q Consensus 460 D~~w 463 (773)
++..
T Consensus 122 ~~~~ 125 (174)
T 3dmn_A 122 NANQ 125 (174)
T ss_dssp TCBT
T ss_pred cCCc
Confidence 8764
No 323
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=29.73 E-value=50 Score=32.50 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=24.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
|...--|.|||.+++.++..+... ..++|+|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~---g~~VlliD 38 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQK---GKKTVVID 38 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhC---CCcEEEEE
Confidence 445678999999999999988764 23667663
No 324
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=29.71 E-value=52 Score=28.43 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=21.1
Q ss_pred CcEEEEeecHHHHHHHHHHHHhCCCeEEE
Q 004103 382 HRVLLFSQMTRLMDILEIYLKLNDFKFLR 410 (773)
Q Consensus 382 ~kvLIFsq~~~~ld~L~~~L~~~g~~~~~ 410 (773)
.++||..........+...|...|+.+..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~ 35 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQC 35 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEE
Confidence 46777777777777788877777776553
No 325
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=29.63 E-value=2.7e+02 Score=29.73 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=25.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh---cCCCCCEEEEeCCcc
Q 004103 77 GILADEMGLGKTIQTIALIAYLLEN---KGVTGPHVIVAPKAV 116 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~---~~~~gp~LIVvP~sl 116 (773)
..|+-+.|+|||..+..++...... .+..++++++.-...
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 4788999999998876555333221 113456777766543
No 326
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=29.59 E-value=62 Score=35.09 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=32.0
Q ss_pred cCCCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEE
Q 004103 51 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 111 (773)
Q Consensus 51 l~~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIV 111 (773)
+....+.+.+...+..++. ..+...++.-++|+|||.+.-+++..+ . ...|.++++
T Consensus 146 l~~Lg~~~~~~~~L~~l~~--~~ggii~I~GpnGSGKTTlL~allg~l-~--~~~g~I~~~ 201 (418)
T 1p9r_A 146 LHSLGMTAHNHDNFRRLIK--RPHGIILVTGPTGSGKSTTLYAGLQEL-N--SSERNILTV 201 (418)
T ss_dssp GGGSCCCHHHHHHHHHHHT--SSSEEEEEECSTTSCHHHHHHHHHHHH-C--CTTSCEEEE
T ss_pred HHHcCCCHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHhhc-C--CCCCEEEEe
Confidence 3344566666666666631 222223678999999997765555443 2 224455444
No 327
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=29.43 E-value=1.5e+02 Score=25.75 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=44.5
Q ss_pred CCceEEEecCChhHHHHHHHHHHhhcCCccEE--EcCHHHHHHhHHHHhhcCeeEEEEccccccCC-hhhHHHHHHHc-c
Q 004103 129 PSIAAVVYDGRPDERKAMREEFFSERGRFNVL--ITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN-HECALAKTISG-Y 204 (773)
Q Consensus 129 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~Vv--ItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn-~~s~~~~~l~~-~ 204 (773)
+..+++++......+..+...+... +.+.++ ..+.+... ..+....+++||+|-. +.+ ....+.+.++. .
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~-~~~~~v~~~~~~~~a~---~~l~~~~~dlii~d~~--l~~~~g~~~~~~l~~~~ 87 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLS-GSVNVVGEADDGAAAL---ELIKAHLPDVALLDYR--MPGMDGAQVAAAVRSYE 87 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHH-SSEEEEEEESSHHHHH---HHHHHHCCSEEEEETT--CSSSCHHHHHHHHHHTT
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhC-CCeEEEEEeCCHHHHH---HHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhcC
Confidence 3456666777666666555544332 333332 33444332 3445567999999942 222 23344555543 3
Q ss_pred ccceEEEecCCC
Q 004103 205 QIQRRLLLTGTP 216 (773)
Q Consensus 205 ~~~~rllLTgTP 216 (773)
.....+++|+.+
T Consensus 88 ~~~~ii~~s~~~ 99 (152)
T 3eul_A 88 LPTRVLLISAHD 99 (152)
T ss_dssp CSCEEEEEESCC
T ss_pred CCCeEEEEEccC
Confidence 445678888864
No 328
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=29.39 E-value=44 Score=37.04 Aligned_cols=49 Identities=2% Similarity=-0.128 Sum_probs=33.6
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 124 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~ 124 (773)
+.-.+|+.++|+|||..++.++...... ...+++++.--....+....+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E~s~~~l~~r~ 290 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDL 290 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESSSCHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEeccCCHHHHHHHH
Confidence 3335899999999999988888776542 134788887655555544433
No 329
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=29.29 E-value=44 Score=30.94 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=18.9
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l 98 (773)
+...+|...+|+|||.++-.+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4456889999999998876665443
No 330
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=28.83 E-value=88 Score=32.43 Aligned_cols=41 Identities=24% Similarity=0.143 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhh----cCCCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 58 AYQLEGLQWMLSLF----NNNLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 58 pyQ~~gv~~l~~~~----~~~~~gILademGlGKTi~aiali~~l 98 (773)
...+..+...+..- ......+|..+.|+|||..+-+++..+
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45666666665421 112456889999999998776555443
No 331
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=28.65 E-value=63 Score=43.61 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=38.0
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Q 004103 55 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 116 (773)
Q Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sl 116 (773)
.+.+++..-+-.+......+.+.+|..++|+|||...=.++..+....+....+.++-|+++
T Consensus 904 ~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~ 965 (2695)
T 4akg_A 904 SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVL 965 (2695)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTS
T ss_pred cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 44455555555555556667778999999999997754444444332222234456668744
No 332
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=28.64 E-value=3.3e+02 Score=25.73 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=63.9
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccccCCcccCCeeEEeC
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFD 460 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D 460 (773)
..++++++.+..+.+.+.+.+...+..+..+.|+.. +-....... ..+.+ +++|- ||.+-=|...-.|=..+
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~--~~v~~a~~~-~~~~d---VIISR--Ggta~~lr~~~~iPVV~ 75 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLT--RASKIAFGL-QDEVD---AIISR--GATSDYIKKSVSIPSIS 75 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHH--HHHHHHHHH-TTTCS---EEEEE--HHHHHHHHTTCSSCEEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHH--HHHHHHHHh-cCCCe---EEEEC--ChHHHHHHHhCCCCEEE
Confidence 458999999999999999988877777777888754 444445555 43444 55553 34333333322344566
Q ss_pred CCCChhhHHHHhhhhhhcCC
Q 004103 461 SDWNPQMDQQAEDRAHRIGQ 480 (773)
Q Consensus 461 ~~wNp~~~~Qa~gRa~RiGQ 480 (773)
.+.+..+.++++-++-+.+.
T Consensus 76 I~~s~~Dil~al~~a~~~~~ 95 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGN 95 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCS
T ss_pred EcCCHhHHHHHHHHHHhhCC
Confidence 77889999999999999876
No 333
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=28.46 E-value=1.7e+02 Score=25.39 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=36.8
Q ss_pred CCcEEEEee------cHHHHHHHHHHHHhCCCe-EEEEcCCCCHHHHHHHHHhhc
Q 004103 381 GHRVLLFSQ------MTRLMDILEIYLKLNDFK-FLRLDGSTKTEERGTLLKQFN 428 (773)
Q Consensus 381 g~kvLIFsq------~~~~ld~L~~~L~~~g~~-~~~i~G~~~~~eR~~~i~~Fn 428 (773)
.++|+||+. +-........+|...|++ |..++=....+.+..+.+...
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg 73 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSN 73 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHT
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhC
Confidence 358999998 567888999999999995 888887777666666554443
No 334
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=28.16 E-value=1.7e+02 Score=30.01 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=37.6
Q ss_pred CCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCC--hhHHHHHHHHHHhhcCCccEEEcC
Q 004103 105 TGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITH 163 (773)
Q Consensus 105 ~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~~~VvItT 163 (773)
.+++||.|+. ..+......+... +..+..++|. ...|......+.. +..+|+|+|
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~--g~~~vLVaT 85 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQ--GEVRVLVAT 85 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHH--TSCCEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhc--CCceEEEEe
Confidence 5699999998 4455555555543 5677778876 4556655555544 678899998
No 335
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=28.07 E-value=91 Score=31.19 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHHhhcC-----------CCCeEEecCCCCCHHHHHHHHHHH
Q 004103 56 LRAYQLEGLQWMLSLFNN-----------NLNGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 56 LrpyQ~~gv~~l~~~~~~-----------~~~gILademGlGKTi~aiali~~ 97 (773)
..+.+...+.-+...+.+ ..+.+|.-+.|+|||..+-+++..
T Consensus 44 g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 44 GAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 345555555555443322 234678999999999877666543
No 336
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=28.01 E-value=1.6e+02 Score=24.51 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=11.2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhc
Q 004103 404 NDFKFLRLDGSTKTEERGTLLKQFN 428 (773)
Q Consensus 404 ~g~~~~~i~G~~~~~eR~~~i~~Fn 428 (773)
..+..+.+|-.++..+-.+++...+
T Consensus 45 ~~~dlii~D~~~p~~~g~~~~~~lr 69 (120)
T 3f6p_A 45 LQPDLILLDIMLPNKDGVEVCREVR 69 (120)
T ss_dssp TCCSEEEEETTSTTTHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 3444555555444444344444443
No 337
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=27.96 E-value=2e+02 Score=28.52 Aligned_cols=81 Identities=14% Similarity=0.037 Sum_probs=47.1
Q ss_pred EecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHhh
Q 004103 299 KCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLR 378 (773)
Q Consensus 299 ~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~ 378 (773)
...+.+.|.+.+..+.......+.... .+||-.....++....
T Consensus 111 ~~~l~~~Q~~ai~~~l~~~~~ll~~~t-------------------------------------GsGKT~~~~~~~~~~~ 153 (282)
T 1rif_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPT-------------------------------------SAGRSLIQALLARYYL 153 (282)
T ss_dssp ECCCCHHHHHHHHHHHHHSEEEECCCT-------------------------------------TSCHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHhcCCeEEEcCC-------------------------------------CCCcHHHHHHHHHHHH
Confidence 357889999998887664333222222 2344333333332222
Q ss_pred -hcCCcEEEEeecHHHHHHHHHHHHhC----CCeEEEEcCCCC
Q 004103 379 -KSGHRVLLFSQMTRLMDILEIYLKLN----DFKFLRLDGSTK 416 (773)
Q Consensus 379 -~~g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~ 416 (773)
..+.++||.+.....++.+.+.+... +..+..+.|+..
T Consensus 154 ~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~ 196 (282)
T 1rif_A 154 ENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGAS 196 (282)
T ss_dssp HHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCS
T ss_pred HcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCc
Confidence 22348999999887777666666543 335677777654
No 338
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=27.80 E-value=56 Score=32.51 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=24.3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
+...--|.|||.+++.++..+...+ .++|+|=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G---~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQG---KKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 4456789999999999998887642 3677764
No 339
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=27.67 E-value=2e+02 Score=24.88 Aligned_cols=83 Identities=16% Similarity=0.042 Sum_probs=45.3
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEE-cCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHc-cccce
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLI-THYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-YQIQR 208 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvI-tTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~-~~~~~ 208 (773)
.+++++......+..+...+......+.|.. .+.+ .-...+....+++||+|-.-- ......+.+.++. .....
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~---~al~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~~ 96 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQ---EAIQLLEKESVDIAILDVEMP-VKTGLEVLEWIRSEKLETK 96 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHH---HHHHHHTTSCCSEEEECSSCS-SSCHHHHHHHHHHTTCSCE
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHH---HHHHHhhccCCCEEEEeCCCC-CCcHHHHHHHHHHhCCCCe
Confidence 5677777777766666555433211122322 2333 223456667899999994321 1223345555543 34567
Q ss_pred EEEecCCCC
Q 004103 209 RLLLTGTPI 217 (773)
Q Consensus 209 rllLTgTP~ 217 (773)
.+++|+.+-
T Consensus 97 ii~ls~~~~ 105 (150)
T 4e7p_A 97 VVVVTTFKR 105 (150)
T ss_dssp EEEEESCCC
T ss_pred EEEEeCCCC
Confidence 788888753
No 340
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=27.44 E-value=2.6e+02 Score=24.34 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=34.7
Q ss_pred CcEEEEeec------HHHHHHHHHHHHhCCC-eEEEEcCCCCHHHHHHHHHhhcCCC
Q 004103 382 HRVLLFSQM------TRLMDILEIYLKLNDF-KFLRLDGSTKTEERGTLLKQFNAPD 431 (773)
Q Consensus 382 ~kvLIFsq~------~~~ld~L~~~L~~~g~-~~~~i~G~~~~~eR~~~i~~Fn~~~ 431 (773)
++|+||+.. -.........|...|+ +|..++-....+-|..+.+.-+.+.
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~T 76 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPT 76 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCS
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCC
Confidence 599999753 3566777777888887 5777877777766666655544433
No 341
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=27.43 E-value=1.6e+02 Score=24.68 Aligned_cols=53 Identities=21% Similarity=0.188 Sum_probs=39.5
Q ss_pred CCcEEEEee------cHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCC
Q 004103 381 GHRVLLFSQ------MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSP 433 (773)
Q Consensus 381 g~kvLIFsq------~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~ 433 (773)
.++|+||+. +-.....+..+|...|++|..++=....+.+..+.........+
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP 72 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYP 72 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSC
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCC
Confidence 457999987 33467788888999999999999888777777776666543333
No 342
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=27.26 E-value=36 Score=32.83 Aligned_cols=40 Identities=10% Similarity=0.044 Sum_probs=22.7
Q ss_pred CeeEEEEccccccCC---hhhHHHHHHHccc----cceEEEecCCCC
Q 004103 178 QWIYMIVDEGHRLKN---HECALAKTISGYQ----IQRRLLLTGTPI 217 (773)
Q Consensus 178 ~~~~vIiDEaH~lkn---~~s~~~~~l~~~~----~~~rllLTgTP~ 217 (773)
+-.+|||||||.+-+ ......+.+..+. ...-++|.|.|.
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~ 133 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGP 133 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCG
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCH
Confidence 356899999999832 1221223333442 233577777773
No 343
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=26.89 E-value=44 Score=34.12 Aligned_cols=29 Identities=17% Similarity=0.113 Sum_probs=22.5
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEE
Q 004103 80 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 111 (773)
Q Consensus 80 ademGlGKTi~aiali~~l~~~~~~~gp~LIV 111 (773)
+.--|.|||.+++.++..+...+ .++|+|
T Consensus 47 ~~KGGvGKTT~a~nLA~~La~~G---~~Vlli 75 (307)
T 3end_A 47 YGKGGIGKSTTSSNLSAAFSILG---KRVLQI 75 (307)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred ECCCCccHHHHHHHHHHHHHHCC---CeEEEE
Confidence 36889999999999998887652 366666
No 344
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=26.87 E-value=44 Score=33.87 Aligned_cols=37 Identities=14% Similarity=0.034 Sum_probs=25.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCCCEEEE--eCCcchHHH
Q 004103 81 DEMGLGKTIQTIALIAYLLENKGVTGPHVIV--APKAVLPNW 120 (773)
Q Consensus 81 demGlGKTi~aiali~~l~~~~~~~gp~LIV--vP~sll~qW 120 (773)
.--|.|||.+++.++..+...+ .++|+| -|..-+..|
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G---~rVlliD~D~q~~~~~~ 82 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLN---LKVLMIDKDLQATLTKD 82 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTT---CCEEEEEECTTCHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHhCC---CeEEEEeCCCCCCHHHH
Confidence 4779999999999988887532 366665 244444444
No 345
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=26.86 E-value=45 Score=33.73 Aligned_cols=29 Identities=34% Similarity=0.366 Sum_probs=22.0
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEE
Q 004103 80 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 111 (773)
Q Consensus 80 ademGlGKTi~aiali~~l~~~~~~~gp~LIV 111 (773)
+.--|.|||.+++.++..+...+ .++|+|
T Consensus 8 s~KGGvGKTT~a~nLA~~La~~G---~rVlli 36 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAEMG---KKVMIV 36 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred eCCCcCcHHHHHHHHHHHHHHCC---CeEEEE
Confidence 34679999999999998887642 366665
No 346
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=26.82 E-value=39 Score=33.76 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=17.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l 98 (773)
.+|+..+|+|||..+..++..+
T Consensus 4 i~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhcC
Confidence 3678999999998887776543
No 347
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=26.81 E-value=39 Score=33.62 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=21.5
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEE
Q 004103 80 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 111 (773)
Q Consensus 80 ademGlGKTi~aiali~~l~~~~~~~gp~LIV 111 (773)
+.--|.|||.+++.++..+... ..++|+|
T Consensus 7 s~KGGvGKTT~a~nLA~~la~~---G~~Vlli 35 (269)
T 1cp2_A 7 YGKGGIGKSTTTQNLTSGLHAM---GKTIMVV 35 (269)
T ss_dssp EECTTSSHHHHHHHHHHHHHTT---TCCEEEE
T ss_pred ecCCCCcHHHHHHHHHHHHHHC---CCcEEEE
Confidence 3467999999999998888753 2366665
No 348
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=26.73 E-value=85 Score=27.64 Aligned_cols=55 Identities=11% Similarity=0.197 Sum_probs=35.2
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 443 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a 443 (773)
+.+|||..........+...|...|+.+..... . .++++.......+ ++|+....
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~---~---~~a~~~l~~~~~d--lvi~d~~l 61 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTS---P---LDALEALKGTSVQ--LVISDMRM 61 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESC---H---HHHHHHHTTSCCS--EEEEESSC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCC---H---HHHHHHHhcCCCC--EEEEecCC
Confidence 457888888888889999999888887664332 2 3344444443333 45555443
No 349
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=26.72 E-value=55 Score=27.22 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=31.8
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCC
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 416 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~ 416 (773)
.+.+++|||..-.........|...|+++..++|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4678999999887788888999999999999999754
No 350
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=26.50 E-value=1.6e+02 Score=27.02 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=37.4
Q ss_pred CCCCEEEEeCC-cchHHHHHHHHhhcCCceEEEecCC--hhHHHHHHHHHHhhcCCccEEEcC
Q 004103 104 VTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITH 163 (773)
Q Consensus 104 ~~gp~LIVvP~-sll~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~~~VvItT 163 (773)
..+++||.|+. ..+......+... +..+..++|. ..+|......+.. +..+|+|+|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~--g~~~vLvaT 91 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRD--GKEKVLITT 91 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHT--TSCSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEe
Confidence 34689999998 5555555566553 4567778875 4455555555543 678899988
No 351
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=26.45 E-value=1.3e+02 Score=25.28 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=13.8
Q ss_pred cEEEEeecHHHHHHHHHHHHhCCCeE
Q 004103 383 RVLLFSQMTRLMDILEIYLKLNDFKF 408 (773)
Q Consensus 383 kvLIFsq~~~~ld~L~~~L~~~g~~~ 408 (773)
++||..........+...|...|+.+
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v 30 (126)
T 1dbw_A 5 TVHIVDDEEPVRKSLAFMLTMNGFAV 30 (126)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCcEE
Confidence 45555555555555555555555443
No 352
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=26.40 E-value=2e+02 Score=25.66 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=38.6
Q ss_pred CcEEEEee------cHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCC
Q 004103 382 HRVLLFSQ------MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPD 431 (773)
Q Consensus 382 ~kvLIFsq------~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~ 431 (773)
.+|+||+. +-.....+..+|...|++|..++=....+.+..+.+......
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~t 90 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPT 90 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCS
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCC
Confidence 37999977 567788999999999999999887777777777666554433
No 353
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=26.16 E-value=45 Score=32.12 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=18.0
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l 98 (773)
...+|...+|+|||.++-.++..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 345788999999998886665543
No 354
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=26.12 E-value=47 Score=34.50 Aligned_cols=29 Identities=17% Similarity=0.113 Sum_probs=22.1
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEE
Q 004103 80 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 111 (773)
Q Consensus 80 ademGlGKTi~aiali~~l~~~~~~~gp~LIV 111 (773)
+--=|.|||.+++-+++.|...+ .++|+|
T Consensus 54 aGKGGVGKTTtavNLA~aLA~~G---kkVllI 82 (314)
T 3fwy_A 54 YGKGGIGKSTTSSNLSAAFSILG---KRVLQI 82 (314)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred ECCCccCHHHHHHHHHHHHHHCC---CeEEEE
Confidence 45668999999999999888753 256665
No 355
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.09 E-value=1e+02 Score=26.03 Aligned_cols=61 Identities=10% Similarity=0.137 Sum_probs=35.5
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc-ccccCC
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA-GGLGLN 449 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a-gg~GLN 449 (773)
+.++||..........+...|...|+.+.... +. .++++.......+ ++++.... +..|++
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~---~~a~~~l~~~~~d--lvi~d~~l~~~~g~~ 68 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAA---DG---VDALELLGGFTPD--LMICDIAMPRMNGLK 68 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEES---CH---HHHHHHHTTCCCS--EEEECCC-----CHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEEeC---CH---HHHHHHHhcCCCC--EEEEecCCCCCCHHH
Confidence 56788888888888888888888887765432 22 2344445443333 45555443 233443
No 356
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=25.93 E-value=43 Score=35.34 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=17.0
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQT 91 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~a 91 (773)
++...-.|.|+ |+| ..+|+|||.++
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 33333346665 665 79999999987
No 357
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=25.88 E-value=43 Score=35.61 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=18.1
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTI 92 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~ai 92 (773)
++...-+|.|+ |+| ..+|+|||.++.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 34444456665 555 799999999874
No 358
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=25.87 E-value=46 Score=32.49 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=19.4
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l 98 (773)
+...+|.-.+|+|||.++-.+...+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456788999999999887776554
No 359
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=25.75 E-value=67 Score=29.48 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEe
Q 004103 365 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN----DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 440 (773)
Q Consensus 365 ~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlS 440 (773)
.+.....+++.+....|.||+|.|.....++.|-+.|=.. =++.. +.|.-.. ...+ |+|+
T Consensus 23 ~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~-~~~~~~~------------~~~P---V~L~ 86 (150)
T 3sxu_A 23 AVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHN-LAGEGPR------------GGAP---VEIA 86 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEE-ETTCSST------------TCCS---EEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCc-cCCCCCC------------CCCC---EEEe
Confidence 4677888999999999999999999999999999998432 23443 3333221 1334 5666
Q ss_pred cccccccCCcccCCeeEEeCCCC
Q 004103 441 TRAGGLGLNLQTADTVIIFDSDW 463 (773)
Q Consensus 441 t~agg~GLNL~~ad~VI~~D~~w 463 (773)
+... . .-...+.+|+++..+
T Consensus 87 ~~~~--~-~~~~~~vLinL~~~~ 106 (150)
T 3sxu_A 87 WPQK--R-SSSRRDILISLRTSF 106 (150)
T ss_dssp CTTS--C-CCSCCSEEEECCSSC
T ss_pred CCCC--C-CCCcCCEEEECCCCC
Confidence 4321 1 123577899998876
No 360
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=25.63 E-value=1.4e+02 Score=36.80 Aligned_cols=84 Identities=14% Similarity=0.068 Sum_probs=54.0
Q ss_pred EEEEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHH
Q 004103 296 VILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLP 375 (773)
Q Consensus 296 ~~v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~ 375 (773)
....+++++.|.+....+.......+.... .|||-......+.
T Consensus 179 ~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApT-------------------------------------GSGKTlva~l~i~ 221 (1108)
T 3l9o_A 179 RTYPFTLDPFQDTAISCIDRGESVLVSAHT-------------------------------------SAGKTVVAEYAIA 221 (1108)
T ss_dssp SCCSSCCCHHHHHHHHHHTTTCCEEEECCS-------------------------------------SSHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHcCCCEEEECCC-------------------------------------CCChHHHHHHHHH
Confidence 344567899999998887543333222222 2444333222222
Q ss_pred HhhhcCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCC
Q 004103 376 KLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 416 (773)
Q Consensus 376 ~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~ 416 (773)
.....+.++||.+.....+.-+...|....-.+..++|+++
T Consensus 222 ~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~ 262 (1108)
T 3l9o_A 222 QSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT 262 (1108)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB
T ss_pred HHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc
Confidence 22345789999999998888888777765558888999876
No 361
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=25.61 E-value=82 Score=26.46 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=31.7
Q ss_pred hcCCcEEEEeecHHHHHHHHHHHHhCCCe-EEEEcCCCCH
Q 004103 379 KSGHRVLLFSQMTRLMDILEIYLKLNDFK-FLRLDGSTKT 417 (773)
Q Consensus 379 ~~g~kvLIFsq~~~~ld~L~~~L~~~g~~-~~~i~G~~~~ 417 (773)
..+..++|||..-.........|...|+. +..++|++..
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 34678999999877788888999999995 7889997653
No 362
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=25.60 E-value=85 Score=36.76 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q 004103 57 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 57 rpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~ 100 (773)
++..+.-+..++.. ....+.+|..++|+|||..+-+++..+..
T Consensus 185 ~~~~i~~l~~~l~~-~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 185 RSKEIQRVIEVLSR-RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp CHHHHHHHHHHHHC-SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhC-CCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 34444444333332 33446789999999999988777766543
No 363
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=25.58 E-value=2.1e+02 Score=24.84 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=43.2
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEc-CHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHc-cccce
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLIT-HYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-YQIQR 208 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvIt-Tye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~-~~~~~ 208 (773)
.+++++......+..+...+.. .++.|..+ +.+.. ...+....+++||+|=.-- ......+.+.++. .....
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~~--~g~~v~~~~~~~~a---~~~l~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~ 88 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLSP--LPYTLHFARDATQA---LQLLASREVDLVISAAHLP-QMDGPTLLARIHQQYPSTT 88 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT--SSCEEEEESSHHHH---HHHHHHSCCSEEEEESCCS-SSCHHHHHHHHHHHCTTSE
T ss_pred ceEEEECCCHHHHHHHHHHhcc--cCcEEEEECCHHHH---HHHHHcCCCCEEEEeCCCC-cCcHHHHHHHHHhHCCCCe
Confidence 4566666666655555544433 23554433 23322 2345566899999994321 1123344455533 34556
Q ss_pred EEEecCCCC
Q 004103 209 RLLLTGTPI 217 (773)
Q Consensus 209 rllLTgTP~ 217 (773)
.+++|+.+-
T Consensus 89 ii~~s~~~~ 97 (153)
T 3hv2_A 89 RILLTGDPD 97 (153)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 788888653
No 364
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=25.31 E-value=48 Score=30.69 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=18.2
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l~ 99 (773)
..++.-.+|+|||.++-.+...+-
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 357888999999988766665553
No 365
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=25.31 E-value=35 Score=33.20 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=17.6
Q ss_pred CCeEEecCCCCCHHHHHHHHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIA 96 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~ 96 (773)
...++.-++|+|||..|+.++.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999988877764
No 366
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=25.07 E-value=57 Score=35.70 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=19.7
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l 98 (773)
..+.+|..++|+|||..+-+++..+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4567889999999998887766544
No 367
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=25.05 E-value=98 Score=32.43 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=24.8
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
+...--|.|||.+|.+++..+... ..++|+|-
T Consensus 30 v~sgKGGvGKTTvA~~LA~~lA~~---G~rVLlvD 61 (349)
T 3ug7_A 30 MFGGKGGVGKTTMSAATGVYLAEK---GLKVVIVS 61 (349)
T ss_dssp EEECSSSTTHHHHHHHHHHHHHHS---SCCEEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 556788999999999999888765 23666665
No 368
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=24.77 E-value=46 Score=30.22 Aligned_cols=21 Identities=19% Similarity=-0.116 Sum_probs=15.6
Q ss_pred eEEecCCCCCHHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 77 gILademGlGKTi~aiali~~ 97 (773)
.+|...+|+|||.++-.+...
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 467889999999877555443
No 369
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=24.57 E-value=57 Score=35.73 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=18.1
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTIA 93 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~aia 93 (773)
++...-.|.|+ |+| ..+|+|||.+++.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM~G 156 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTMMG 156 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHTC
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEeec
Confidence 33333356665 665 6899999999853
No 370
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=24.49 E-value=2.8e+02 Score=22.33 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhhcCCcEEEEeecHH--HHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhh
Q 004103 367 FELLDRLLPKLRKSGHRVLLFSQMTR--LMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQF 427 (773)
Q Consensus 367 ~~~L~~ll~~l~~~g~kvLIFsq~~~--~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F 427 (773)
-+-+..+++.++..|+..+||.+-.. .++.........|..|-.+.. +.+++-...+..|
T Consensus 37 sqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlks-tdpeeltqrvref 98 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKS-TDPEELTQRVREF 98 (112)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEEC-CCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhcc-CCHHHHHHHHHHH
Confidence 45567888889999999999987543 455566666777999998875 5556665666666
No 371
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=24.47 E-value=26 Score=34.21 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=21.9
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEE
Q 004103 80 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 111 (773)
Q Consensus 80 ademGlGKTi~aiali~~l~~~~~~~gp~LIV 111 (773)
..--|.|||.+++.++..+... ..++|+|
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~---g~~Vlli 34 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASD---YDKIYAV 34 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTT---CSCEEEE
T ss_pred ecCCCCCHHHHHHHHHHHHHHC---CCeEEEE
Confidence 4467999999999998888654 2466666
No 372
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=24.45 E-value=44 Score=28.37 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=30.6
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCC
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 416 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~ 416 (773)
.+++++|||..-........+|...|++...+.|++.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 4678999998766677788899999999989998754
No 373
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=24.45 E-value=1.2e+02 Score=26.09 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=19.6
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCCCeE
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLNDFKF 408 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g~~~ 408 (773)
..+|||........+.+...|...|+.+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~ 32 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHC 32 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCe
Confidence 3467777777777777777777777663
No 374
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=24.32 E-value=54 Score=27.38 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=31.5
Q ss_pred cCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCC
Q 004103 380 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 416 (773)
Q Consensus 380 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~ 416 (773)
.+.+++|||..-.........|...|+++..++|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4678999999877778888899999999999999754
No 375
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=24.13 E-value=2.4e+02 Score=23.81 Aligned_cols=76 Identities=5% Similarity=-0.024 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcC--CCCCcEEEEEeccccccc-CCcccCCeeEEeCCCCChhhHHHHhhhhhhcC
Q 004103 404 NDFKFLRLDGSTKTEERGTLLKQFNA--PDSPYFMFLLSTRAGGLG-LNLQTADTVIIFDSDWNPQMDQQAEDRAHRIG 479 (773)
Q Consensus 404 ~g~~~~~i~G~~~~~eR~~~i~~Fn~--~~~~~~v~LlSt~agg~G-LNL~~ad~VI~~D~~wNp~~~~Qa~gRa~RiG 479 (773)
..+..+.++-.++...-.++++..+. ......+++++......- .....+...-++.-|.++....+++.++.+..
T Consensus 53 ~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 53 VKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp TCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 44566666655543333444444443 223344555543321110 01111111122234566666666666665543
No 376
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=24.12 E-value=52 Score=34.40 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=18.3
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTIA 93 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~aia 93 (773)
++...-+|.|+ |+| ..+|+|||.++..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm~G 97 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEecc
Confidence 34444456665 555 7899999999753
No 377
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=24.03 E-value=87 Score=27.62 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=35.3
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEeccc
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 443 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~a 443 (773)
+.++||..........+...|...|+.+.... + -.+++..+.....+ ++|+....
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~---~---~~~a~~~l~~~~~d--liild~~l 57 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFA---S---ATEALAGLSADFAG--IVISDIRM 57 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEES---C---HHHHHHTCCTTCCS--EEEEESCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEEC---C---HHHHHHHHHhCCCC--EEEEeCCC
Confidence 45788888888888999999988888765443 2 23455555543333 45555443
No 378
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=23.97 E-value=2.2e+02 Score=24.32 Aligned_cols=83 Identities=13% Similarity=0.162 Sum_probs=43.5
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHc---cccc
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG---YQIQ 207 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~---~~~~ 207 (773)
.+++++......+..+...+.. ..+.+.+.+......-...+....+++||+|-.-- ......+.+.++. ....
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~--~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~-~~~g~~~~~~lr~~~~~~~~ 82 (144)
T 3kht_A 6 KRVLVVEDNPDDIALIRRVLDR--KDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLP-IANGFEVMSAVRKPGANQHT 82 (144)
T ss_dssp EEEEEECCCHHHHHHHHHHHHH--TTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCG-GGCHHHHHHHHHSSSTTTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHh--cCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCC-CCCHHHHHHHHHhcccccCC
Confidence 4566666666666555544433 23332222222222223455667899999994311 1123345555654 3445
Q ss_pred eEEEecCCC
Q 004103 208 RRLLLTGTP 216 (773)
Q Consensus 208 ~rllLTgTP 216 (773)
..+++|+..
T Consensus 83 pii~~s~~~ 91 (144)
T 3kht_A 83 PIVILTDNV 91 (144)
T ss_dssp CEEEEETTC
T ss_pred CEEEEeCCC
Confidence 678888764
No 379
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=23.94 E-value=53 Score=34.82 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=19.1
Q ss_pred HHHHhhcCCCCe-EEe-cCCCCCHHHHHHH
Q 004103 66 WMLSLFNNNLNG-ILA-DEMGLGKTIQTIA 93 (773)
Q Consensus 66 ~l~~~~~~~~~g-ILa-demGlGKTi~aia 93 (773)
-++...-+|.++ |+| ..+|+|||.++..
T Consensus 71 plv~~~l~G~n~tifAYGqTGSGKTyTm~G 100 (355)
T 1goj_A 71 PTVDDILNGYNGTVFAYGQTGAGKSYTMMG 100 (355)
T ss_dssp HHHHHHTTTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHHHhCCCcceEEEECCCCCCcceEeec
Confidence 344444456665 555 7899999998743
No 380
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=23.83 E-value=91 Score=27.44 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=22.6
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCCCeEEEE
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRL 411 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i 411 (773)
..+|||..........+...|...|+.+...
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~ 44 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFA 44 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEE
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEE
Confidence 4577888888888888888887777765543
No 381
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=23.82 E-value=2.8e+02 Score=22.95 Aligned_cols=85 Identities=9% Similarity=0.063 Sum_probs=46.2
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc---ccc
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY---QIQ 207 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~---~~~ 207 (773)
.++++.......+..+...+.. .++.|..++ ....-...+....+++||+|-.-- ......+.+.++.. ...
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~--~g~~v~~~~--~~~~a~~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~~~ 78 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEM--LGFQADYVM--SGTDALHAMSTRGYDAVFIDLNLP-DTSGLALVKQLRALPMEKTS 78 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHH--TTEEEEEES--SHHHHHHHHHHSCCSEEEEESBCS-SSBHHHHHHHHHHSCCSSCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHH--cCCCEEEEC--CHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHhhhccCCC
Confidence 4566666666666665554433 244544332 122223445667899999994321 12234555556543 455
Q ss_pred eEEEecCCCCCCC
Q 004103 208 RRLLLTGTPIQNS 220 (773)
Q Consensus 208 ~rllLTgTP~~n~ 220 (773)
..+++|+.+-...
T Consensus 79 ~ii~~s~~~~~~~ 91 (127)
T 3i42_A 79 KFVAVSGFAKNDL 91 (127)
T ss_dssp EEEEEECC-CTTC
T ss_pred CEEEEECCcchhH
Confidence 6788888765444
No 382
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=23.79 E-value=69 Score=30.70 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=29.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe--CCcchHHHHHH
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA--PKAVLPNWINE 123 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv--P~sll~qW~~E 123 (773)
+...--|.|||.+++.++..+... . ++|+|= |...+..|...
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~---g-~VlliD~D~q~~~~~~~~~ 48 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQ---G-ETLLIDGDPNRSATGWGKR 48 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTT---S-CEEEEEECTTCHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhc---C-CEEEEECCCCCCHHHHhcC
Confidence 445667999999999998888653 2 666653 66666667543
No 383
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=23.79 E-value=52 Score=34.92 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=17.7
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTI 92 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~ai 92 (773)
++...-.|.|+ |+| ..+|+|||.++.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 34333456665 555 799999999874
No 384
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=23.73 E-value=48 Score=33.01 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=26.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe--CCcchHHH
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA--PKAVLPNW 120 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv--P~sll~qW 120 (773)
+...--|.|||.+++.++..+. . + .++|+|= |..-+..|
T Consensus 32 v~s~kGGvGKTT~a~~LA~~la-~-g--~~VlliD~D~~~~~~~~ 72 (267)
T 3k9g_A 32 IASIKGGVGKSTSAIILATLLS-K-N--NKVLLIDMDTQASITSY 72 (267)
T ss_dssp ECCSSSSSCHHHHHHHHHHHHT-T-T--SCEEEEEECTTCHHHHH
T ss_pred EEeCCCCchHHHHHHHHHHHHH-C-C--CCEEEEECCCCCCHHHH
Confidence 3356789999999999988886 3 2 4666663 44434444
No 385
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=23.66 E-value=39 Score=34.23 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=16.9
Q ss_pred CCeEEecCCCCCHHHHHHHHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIA 96 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~ 96 (773)
.+.+|..+.|+|||..+=+++.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3467899999999987765554
No 386
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=23.64 E-value=45 Score=31.03 Aligned_cols=23 Identities=30% Similarity=0.177 Sum_probs=17.4
Q ss_pred CeEEecCCCCCHHHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l 98 (773)
..+|.-.+|+|||.++-.+...+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 34788999999998876665544
No 387
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=23.63 E-value=1.1e+02 Score=26.17 Aligned_cols=92 Identities=11% Similarity=0.057 Sum_probs=38.7
Q ss_pred CCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecccccc----cCCcccCCee
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL----GLNLQTADTV 456 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~----GLNL~~ad~V 456 (773)
|..+..+......++.+ ....+..+.+|- ++...-.+++...+.......+++++...... .+. ..++.+
T Consensus 28 g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~-~g~~~~ 101 (142)
T 2qxy_A 28 GFNVIWAKNEQEAFTFL----RREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVK-AGAVDY 101 (142)
T ss_dssp TCEEEEESSHHHHHHHH----TTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHH-HTCSCE
T ss_pred CCEEEEECCHHHHHHHH----hccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH-CCccee
Confidence 45555444433333322 234556666665 55444444444443222233444444332111 111 112222
Q ss_pred EEeCCCCChhhHHHHhhhhhhcCC
Q 004103 457 IIFDSDWNPQMDQQAEDRAHRIGQ 480 (773)
Q Consensus 457 I~~D~~wNp~~~~Qa~gRa~RiGQ 480 (773)
+.-|.++....+++.++.+-.+
T Consensus 102 --l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 102 --ILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp --EESSCCHHHHHHHHHHHHHC--
T ss_pred --EeCCCCHHHHHHHHHHHHhhcc
Confidence 2235566666666666655443
No 388
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=23.62 E-value=59 Score=34.43 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=18.1
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTI 92 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~ai 92 (773)
++...-.|.|+ |+| ..+|+|||.++.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 44444456665 555 799999999974
No 389
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=23.61 E-value=40 Score=36.49 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=18.2
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTIA 93 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~aia 93 (773)
++...-.|.|+ |+| ..||+|||.++..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHHC
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEeec
Confidence 34433356665 555 7999999999754
No 390
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.56 E-value=2.5e+02 Score=23.49 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=41.9
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCc--cEEE-cCHHHHHHhHHHHhh-------cCeeEEEEccccccCChhhHHHHH
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRF--NVLI-THYDLIMRDRQYLKK-------VQWIYMIVDEGHRLKNHECALAKT 200 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~--~VvI-tTye~l~~~~~~l~~-------~~~~~vIiDEaH~lkn~~s~~~~~ 200 (773)
.+++++......+..+...+.. ..+ .|.. .+.+.. ...+.. ..+++||+|-.-- ......+.+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~--~~~~~~v~~~~~~~~a---~~~l~~~~~~~~~~~~dlvi~d~~~~-~~~g~~~~~~ 76 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALAN--STVPHEVVTVRDGMEA---MAYLRQEGEYANASRPDLILLXLNLP-KKDGREVLAE 76 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHT--CSSCCEEEEECSHHHH---HHHHTTCGGGGSCCCCSEEEECSSCS-SSCHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHh--cCCCceEEEECCHHHH---HHHHHcccccccCCCCcEEEEecCCC-cccHHHHHHH
Confidence 3556666666665555554433 222 3322 222222 234444 6799999994321 1123345555
Q ss_pred HHcc---ccceEEEecCCCC
Q 004103 201 ISGY---QIQRRLLLTGTPI 217 (773)
Q Consensus 201 l~~~---~~~~rllLTgTP~ 217 (773)
++.. .....+++|+.+-
T Consensus 77 l~~~~~~~~~pii~ls~~~~ 96 (140)
T 1k68_A 77 IKSDPTLKRIPVVVLSTSIN 96 (140)
T ss_dssp HHHSTTGGGSCEEEEESCCC
T ss_pred HHcCcccccccEEEEecCCc
Confidence 5443 3456788888653
No 391
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=23.54 E-value=73 Score=33.00 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=25.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 113 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP 113 (773)
+...--|.|||.+|.+++..+... ..++|+|-.
T Consensus 18 v~sgKGGvGKTTvA~~LA~~lA~~---G~rVLlvD~ 50 (324)
T 3zq6_A 18 FIGGKGGVGKTTISAATALWMARS---GKKTLVIST 50 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred EEeCCCCchHHHHHHHHHHHHHHC---CCcEEEEeC
Confidence 456788999999999999888765 236777753
No 392
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=23.53 E-value=79 Score=32.35 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=22.7
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 80 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 80 ademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
....|.|||.+++.++..+... ..++|+|-
T Consensus 111 s~kgG~GKTtva~nLA~~lA~~---G~rVLLID 140 (299)
T 3cio_A 111 GATPDSGKTFVSSTLAAVIAQS---DQKVLFID 140 (299)
T ss_dssp ESSSSSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHhC---CCcEEEEE
Confidence 4567999999999999888764 23667663
No 393
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=23.49 E-value=59 Score=34.71 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=17.5
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTI 92 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~ai 92 (773)
++...-+|.|+ |+| ..+|+|||.++.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhCCceEEEEeecCCCCCcceecc
Confidence 34333346665 555 799999999874
No 394
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=23.47 E-value=54 Score=34.91 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=17.8
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTI 92 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~ai 92 (773)
++...-.|.|+ |+| ..+|+|||.++.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEEe
Confidence 44443456665 554 789999999874
No 395
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=23.44 E-value=2.2e+02 Score=25.32 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=44.0
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEE--EcCHHHHHHhHHHHhhcCeeEEEEccccccCC-hhhHHHHHHHccccc
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVL--ITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN-HECALAKTISGYQIQ 207 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~Vv--ItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn-~~s~~~~~l~~~~~~ 207 (773)
.+++++......+..+...+... +.+.++ ..+.+... ..+....+++||+|=. +.+ .+..+.+.++.....
T Consensus 26 ~~ILivdd~~~~~~~l~~~L~~~-~~~~~v~~~~~~~~al---~~l~~~~~dlvilD~~--l~~~~g~~l~~~lr~~~~~ 99 (164)
T 3t8y_A 26 IRVLVVDDSAFMRMVLKDIIDSQ-PDMKVVGFAKDGLEAV---EKAIELKPDVITMDIE--MPNLNGIEALKLIMKKAPT 99 (164)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTS-TTEEEEEEESSHHHHH---HHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHHSCC
T ss_pred cEEEEEcCCHHHHHHHHHHHhcC-CCeEEEEecCCHHHHH---HHhccCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCc
Confidence 56667777766666655544332 233333 33443332 3445557999999932 222 233455555444446
Q ss_pred eEEEecCCCC
Q 004103 208 RRLLLTGTPI 217 (773)
Q Consensus 208 ~rllLTgTP~ 217 (773)
..+++|+..-
T Consensus 100 ~ii~~s~~~~ 109 (164)
T 3t8y_A 100 RVIMVSSLTE 109 (164)
T ss_dssp EEEEEESSCC
T ss_pred eEEEEecCCc
Confidence 6788887643
No 396
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=23.33 E-value=49 Score=30.65 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=17.6
Q ss_pred eEEecCCCCCHHHHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYLL 99 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~ 99 (773)
.+|.-.+|+|||.++-.+...+-
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 36778899999988876666553
No 397
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=23.25 E-value=96 Score=24.68 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=27.7
Q ss_pred hcCCcEEEEeecHHHHHHHHHHHHhCCCe-EEEEcCCCC
Q 004103 379 KSGHRVLLFSQMTRLMDILEIYLKLNDFK-FLRLDGSTK 416 (773)
Q Consensus 379 ~~g~kvLIFsq~~~~ld~L~~~L~~~g~~-~~~i~G~~~ 416 (773)
..+.+++|||..-.........|...|++ +..+ |+..
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 45678999999877777888889889986 4444 6643
No 398
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=23.23 E-value=1.7e+02 Score=24.14 Aligned_cols=56 Identities=9% Similarity=0.010 Sum_probs=39.7
Q ss_pred cEEEEeecH-HHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEE
Q 004103 383 RVLLFSQMT-RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 439 (773)
Q Consensus 383 kvLIFsq~~-~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~Ll 439 (773)
+|.||+... ........+|..+|++|..++=....+.++.+.+. +.|...+.++++
T Consensus 5 ~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~-~~G~~tVP~I~i 61 (92)
T 2lqo_A 5 ALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSV-NGGNRTVPTVKF 61 (92)
T ss_dssp CEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHH-SSSSSCSCEEEE
T ss_pred cEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHH-cCCCCEeCEEEE
Confidence 688887533 45777888999999999999988888877776554 334433444444
No 399
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=23.23 E-value=2.7e+02 Score=28.10 Aligned_cols=71 Identities=10% Similarity=0.023 Sum_probs=42.9
Q ss_pred CCcEEEEeecHHHHHHHHHHHHh-----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCcEEEEEecc-cc-----c-ccC
Q 004103 381 GHRVLLFSQMTRLMDILEIYLKL-----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR-AG-----G-LGL 448 (773)
Q Consensus 381 g~kvLIFsq~~~~ld~L~~~L~~-----~g~~~~~i~G~~~~~eR~~~i~~Fn~~~~~~~v~LlSt~-ag-----g-~GL 448 (773)
+-++||.+..+..+..+...+.. .++.+..+.|+....... ....+ ++|+|. .. . ..+
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---IlV~TP~~l~~~l~~~~~~ 231 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQ---IVIGTPGTVLDWCSKLKFI 231 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCS---EEEECHHHHHHHHTTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCC---EEEECHHHHHHHHHhcCCC
Confidence 34799999999877766655543 257788888876532211 11222 455553 22 1 256
Q ss_pred CcccCCeeEEeCC
Q 004103 449 NLQTADTVIIFDS 461 (773)
Q Consensus 449 NL~~ad~VI~~D~ 461 (773)
++..+..||+=+.
T Consensus 232 ~l~~l~~lVlDEa 244 (300)
T 3fmo_B 232 DPKKIKVFVLDEA 244 (300)
T ss_dssp CGGGCSEEEETTH
T ss_pred ChhhceEEEEeCH
Confidence 7888888887444
No 400
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=23.22 E-value=1.5e+02 Score=24.91 Aligned_cols=19 Identities=5% Similarity=-0.090 Sum_probs=10.0
Q ss_pred CCCChhhHHHHhhhhhhcC
Q 004103 461 SDWNPQMDQQAEDRAHRIG 479 (773)
Q Consensus 461 ~~wNp~~~~Qa~gRa~RiG 479 (773)
-|.++....+++.++.+.+
T Consensus 106 kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 106 KPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp SSCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 3455555555555555443
No 401
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=23.05 E-value=1e+02 Score=25.57 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=7.5
Q ss_pred CCCChhhHHHHhhhh
Q 004103 461 SDWNPQMDQQAEDRA 475 (773)
Q Consensus 461 ~~wNp~~~~Qa~gRa 475 (773)
-|+++....+++.++
T Consensus 104 KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 104 KPFQPSRVVEALNKV 118 (120)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 345555555555443
No 402
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=23.04 E-value=1.5e+02 Score=25.42 Aligned_cols=26 Identities=8% Similarity=0.141 Sum_probs=15.2
Q ss_pred CcEEEEeecHHHHHHHHHHHHhC-CCe
Q 004103 382 HRVLLFSQMTRLMDILEIYLKLN-DFK 407 (773)
Q Consensus 382 ~kvLIFsq~~~~ld~L~~~L~~~-g~~ 407 (773)
-++||..........+...|... ++.
T Consensus 10 ~~iLivdd~~~~~~~l~~~L~~~~~~~ 36 (143)
T 2qv0_A 10 MKVIIVEDEFLAQQELSWLINTHSQME 36 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHSCCE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCce
Confidence 35666666666666666666543 444
No 403
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=22.92 E-value=86 Score=34.96 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=27.7
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCC-CEEEEeCCc
Q 004103 74 NLNGILADEMGLGKTIQTIALIAYLLENKGVTG-PHVIVAPKA 115 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~l~~~~~~~g-p~LIVvP~s 115 (773)
..+.+++-.+|+|||...-+++..++....... .++++=|+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 457899999999999887777776665432222 234444553
No 404
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=22.91 E-value=69 Score=34.89 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=25.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 77 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
.+++...|+|||.++..++.++...+ .++++|.
T Consensus 102 I~ivG~~GvGKTTla~~La~~l~~~G---~kVllv~ 134 (432)
T 2v3c_C 102 ILLVGIQGSGKTTTAAKLARYIQKRG---LKPALIA 134 (432)
T ss_dssp EEEECCSSSSTTHHHHHHHHHHHHHH---CCEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEe
Confidence 45677899999999999888887653 3556665
No 405
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=22.68 E-value=54 Score=30.68 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=16.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l 98 (773)
.+|...+|+|||.++-.+...+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhc
Confidence 3577889999998876665544
No 406
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=22.64 E-value=54 Score=29.90 Aligned_cols=23 Identities=30% Similarity=0.216 Sum_probs=17.1
Q ss_pred CeEEecCCCCCHHHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~l 98 (773)
+.+|.-.+|+|||.++-.+...+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 45788899999998875555433
No 407
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=22.60 E-value=44 Score=30.72 Aligned_cols=20 Identities=25% Similarity=0.111 Sum_probs=15.3
Q ss_pred eEEecCCCCCHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIA 96 (773)
Q Consensus 77 gILademGlGKTi~aiali~ 96 (773)
.+|...+|+|||..+=.+..
T Consensus 6 i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57889999999977655543
No 408
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=22.59 E-value=43 Score=35.29 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=17.6
Q ss_pred CeEEecCCCCCHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIA 96 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~ 96 (773)
-.+|+.+||+|||..++.++.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 357899999999988887774
No 409
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=22.50 E-value=51 Score=34.93 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=18.2
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTI 92 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~ai 92 (773)
++...-+|.|+ |+| ..+|+|||.++.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 44444456665 555 799999999874
No 410
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=22.46 E-value=59 Score=31.29 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=18.1
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHH
Q 004103 75 LNGILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 75 ~~gILademGlGKTi~aiali~~l 98 (773)
...+|...+|+|||.++-.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 446788999999998876665543
No 411
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=22.42 E-value=59 Score=34.30 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=18.1
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTI 92 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~ai 92 (773)
++...-+|.|+ |+| ..+|+|||.++.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 102 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTMG 102 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHC
T ss_pred HHHHHHhhcCeeEEEecccCCCceEeec
Confidence 44444456665 555 799999999873
No 412
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=22.39 E-value=53 Score=26.92 Aligned_cols=35 Identities=20% Similarity=0.460 Sum_probs=29.8
Q ss_pred CcEEEEeecHHHHHHHHHHHHhCCCeEEEEcCCCC
Q 004103 382 HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 416 (773)
Q Consensus 382 ~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~ 416 (773)
.+++|||+.-.........|...|+++..++|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999887777888889889999878888764
No 413
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=22.26 E-value=2e+02 Score=26.31 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=39.9
Q ss_pred cCCcEEEEee----cHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhc
Q 004103 380 SGHRVLLFSQ----MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFN 428 (773)
Q Consensus 380 ~g~kvLIFsq----~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn 428 (773)
...++|+++- +.--+.++..+|...|+.+..+...++.++-.+.+.+++
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~ 69 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED 69 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC
Confidence 3468888863 556789999999999999999988999988777777664
No 414
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=22.24 E-value=2.9e+02 Score=22.84 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=0.0
Q ss_pred eEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHcc---ccce
Q 004103 132 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY---QIQR 208 (773)
Q Consensus 132 ~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~~---~~~~ 208 (773)
++++....+..+..+...+.. .++.|+ +......-...+....+++||+| .+.-...+..+.+.++.. ....
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~--~g~~v~--~~~~~~~al~~l~~~~~dlvllD-~~~p~~~g~~~~~~l~~~~~~~~~p 78 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKK--EGYEVI--EAENGQIALEKLSEFTPDLIVLX-IMMPVMDGFTVLKKLQEKEEWKRIP 78 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHH--TTCEEE--EESSHHHHHHHHTTBCCSEEEEC-SCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred eEEEEeCCHHHHHHHHHHHHH--CCcEEE--EeCCHHHHHHHHHhcCCCEEEEe-ccCCCCcHHHHHHHHHhcccccCCC
Q ss_pred EEEecCCC
Q 004103 209 RLLLTGTP 216 (773)
Q Consensus 209 rllLTgTP 216 (773)
.+++|+..
T Consensus 79 ii~~s~~~ 86 (122)
T 3gl9_A 79 VIVLTAKG 86 (122)
T ss_dssp EEEEESCC
T ss_pred EEEEecCC
No 415
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=22.24 E-value=55 Score=34.92 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=18.3
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTIA 93 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~aia 93 (773)
++...-+|.++ |+| ..+|+|||.++..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM~G 121 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTMEG 121 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeEec
Confidence 44444456665 555 7999999998743
No 416
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=22.18 E-value=90 Score=42.75 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=41.4
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Q 004103 53 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 116 (773)
Q Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~gILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sl 116 (773)
+..+.|.++.=+-.+......+.+.+|..++|+|||.+-=.++..+..-.+..+..-++-|+++
T Consensus 885 ~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKai 948 (3245)
T 3vkg_A 885 HLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAI 948 (3245)
T ss_dssp TCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTS
T ss_pred CCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCC
Confidence 4466677776666677777778888999999999996543333333222222334567788854
No 417
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=22.17 E-value=2.3e+02 Score=32.17 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=42.6
Q ss_pred hcchHHHHHHHHHHhhh-cCCcEEEEeecHHHHHHHHHHHHhCCCeEEEEcC
Q 004103 363 ASGKFELLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDG 413 (773)
Q Consensus 363 ~s~K~~~L~~ll~~l~~-~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G 413 (773)
.+||-..+..++..+.. .+.+|||.+.....++.|...|...|++++|+.+
T Consensus 205 GTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~ 256 (624)
T 2gk6_A 205 GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA 256 (624)
T ss_dssp TSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeecc
Confidence 46787777777777665 6789999999999999999999888988888865
No 418
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=22.14 E-value=1.9e+02 Score=37.21 Aligned_cols=86 Identities=13% Similarity=0.032 Sum_probs=52.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHhhcCCceEEEecCChhHHHHHHHHHHhhcCCc
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRF 157 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVvP~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~ 157 (773)
.+.-+.|+|||..++.+++..... .+.+++|.+.+.+.+-. +.++.-++.-+...-.
T Consensus 1435 ei~g~~~sGkttl~~~~~a~~~~~---g~~~~~i~~e~~~~~~~--~~~~Gv~~~~l~~~~p------------------ 1491 (1706)
T 3cmw_A 1435 EIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY--ARKLGVDIDNLLCSQP------------------ 1491 (1706)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHHH--HHHTTCCGGGCEEECC------------------
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEecCCCCCHHH--HHHcCCCHHHeEEeCC------------------
Confidence 567899999999999988776554 35778888875555533 5555433221111111
Q ss_pred cEEEcCHHHH-HHhHHHHhhcCeeEEEEcccccc
Q 004103 158 NVLITHYDLI-MRDRQYLKKVQWIYMIVDEGHRL 190 (773)
Q Consensus 158 ~VvItTye~l-~~~~~~l~~~~~~~vIiDEaH~l 190 (773)
.+++.. ..-...+.....++||||..--+
T Consensus 1492 ----~~~e~~l~~~~~~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1492 ----DTGEQALEICDALARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp ----SSHHHHHHHHHHHHHHTCCSEEEESCSTTC
T ss_pred ----CcHHHHHHHHHHHHHcCCCCEEEEccHHhC
Confidence 111222 12223455678899999987766
No 419
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=22.01 E-value=1.8e+02 Score=23.51 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=34.9
Q ss_pred cEEEEeecH-HHH------HHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhc
Q 004103 383 RVLLFSQMT-RLM------DILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFN 428 (773)
Q Consensus 383 kvLIFsq~~-~~l------d~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~Fn 428 (773)
+|+||+... ... ..+..+|...|++|..++-....+.|..+.+...
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g 55 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAG 55 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 677886532 233 6778888999999999998888888887777764
No 420
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=22.00 E-value=56 Score=34.65 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=17.9
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTI 92 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~ai 92 (773)
++...-+|.|+ |+| ..+|+|||.++.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEec
Confidence 34343456665 555 799999999874
No 421
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=21.94 E-value=2.1e+02 Score=24.24 Aligned_cols=81 Identities=12% Similarity=0.026 Sum_probs=42.2
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEc-CHHHHHHhHHHHhhcCeeEEEEccccc----cCChhhHHHHHHHc-c
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLIT-HYDLIMRDRQYLKKVQWIYMIVDEGHR----LKNHECALAKTISG-Y 204 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvIt-Tye~l~~~~~~l~~~~~~~vIiDEaH~----lkn~~s~~~~~l~~-~ 204 (773)
.+++++......+..+...+.. ..+.|..+ +.+.. ...+....+++||+|-.-- .......+.+.++. .
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~--~g~~v~~~~~~~~a---~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKN--HFSKVITLSSPVSL---STVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT--TSSEEEEECCHHHH---HHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHC
T ss_pred ceEEEEeCCHHHHHHHHHHHHh--CCcEEEEeCCHHHH---HHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC
Confidence 4566666666666555554433 24444432 22222 2345566799999995321 01123344444433 3
Q ss_pred ccceEEEecCCC
Q 004103 205 QIQRRLLLTGTP 216 (773)
Q Consensus 205 ~~~~rllLTgTP 216 (773)
.....+++|+.+
T Consensus 79 ~~~~ii~ls~~~ 90 (140)
T 2qr3_A 79 RDLPVVLFTAYA 90 (140)
T ss_dssp TTCCEEEEEEGG
T ss_pred cCCCEEEEECCC
Confidence 455678888764
No 422
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=21.88 E-value=84 Score=31.63 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=21.9
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEE
Q 004103 80 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 111 (773)
Q Consensus 80 ademGlGKTi~aiali~~l~~~~~~~gp~LIV 111 (773)
.-..|.|||.+++.++..+...+ .++|+|
T Consensus 89 s~kgG~GKTt~a~nLA~~lA~~G---~rVLLI 117 (271)
T 3bfv_A 89 SEAPGAGKSTIAANLAVAYAQAG---YKTLIV 117 (271)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred CCCCCCcHHHHHHHHHHHHHhCC---CeEEEE
Confidence 34679999999999988887642 366666
No 423
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=21.88 E-value=52 Score=34.79 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=17.7
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTI 92 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~ai 92 (773)
++...-+|.|+ |+| ..+|+|||.++.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEee
Confidence 34433356665 555 789999999874
No 424
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=21.87 E-value=57 Score=30.36 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=19.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYLLE 100 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l~~ 100 (773)
.+|...+|+|||.++-.+...+..
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 467889999999988777766654
No 425
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=21.79 E-value=2.1e+02 Score=24.26 Aligned_cols=82 Identities=15% Similarity=0.022 Sum_probs=43.2
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHc---cccc
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG---YQIQ 207 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~---~~~~ 207 (773)
.+++++......+..+...+.. .++.|..++ ....-...+....+++||+|-..- ......+.+.++. ....
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~--~g~~v~~~~--~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 8 GDVMIVDDDAHVRIAVKTILSD--AGFHIISAD--SGGQCIDLLKKGFSGVVLLDIMMP-GMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH--TTCEEEEES--SHHHHHHHHHTCCCEEEEEESCCS-SSCHHHHHHHHHHTTCCTTE
T ss_pred CeEEEEcCCHHHHHHHHHHHHH--CCeEEEEeC--CHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHhhcccCCC
Confidence 4556666666555555544433 234443322 112223445566799999995322 1123445555644 3455
Q ss_pred eEEEecCCCC
Q 004103 208 RRLLLTGTPI 217 (773)
Q Consensus 208 ~rllLTgTP~ 217 (773)
..+++|+.+-
T Consensus 83 pii~~s~~~~ 92 (142)
T 3cg4_A 83 AIVMLTAKNA 92 (142)
T ss_dssp EEEEEECTTC
T ss_pred CEEEEECCCC
Confidence 6788888653
No 426
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=21.68 E-value=59 Score=30.03 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=16.6
Q ss_pred CeEEecCCCCCHHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~ 97 (773)
..+|.-.+|+|||.++-.+...
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999887655543
No 427
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=21.62 E-value=2.8e+02 Score=24.46 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=14.1
Q ss_pred CcEEEEeecHHHHHHHHHHHHhCCCe
Q 004103 382 HRVLLFSQMTRLMDILEIYLKLNDFK 407 (773)
Q Consensus 382 ~kvLIFsq~~~~ld~L~~~L~~~g~~ 407 (773)
-||||.=.......++..+|...|+.
T Consensus 13 ~rILiVDD~~~~r~~l~~~L~~~G~~ 38 (134)
T 3to5_A 13 MKILIVDDFSTMRRIVKNLLRDLGFN 38 (134)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCc
Confidence 35555555555555555555555543
No 428
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=21.58 E-value=1.9e+02 Score=24.63 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=42.6
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCC-hhhHHHHHHHc-cccce
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN-HECALAKTISG-YQIQR 208 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn-~~s~~~~~l~~-~~~~~ 208 (773)
.+++++......+..+...+.. .++.|..++ ....-...+....+++||+|- +.+ ....+.+.++. .....
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~--~g~~v~~~~--~~~~a~~~l~~~~~dlvi~d~---~~~~~g~~~~~~l~~~~~~~p 77 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEK--DGFNVIWAK--NEQEAFTFLRREKIDLVFVDV---FEGEESLNLIRRIREEFPDTK 77 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGG--GTCEEEEES--SHHHHHHHHTTSCCSEEEEEC---TTTHHHHHHHHHHHHHCTTCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHh--CCCEEEEEC--CHHHHHHHHhccCCCEEEEeC---CCCCcHHHHHHHHHHHCCCCC
Confidence 4566666666666655554433 345554332 112223445667899999995 322 22233444433 34466
Q ss_pred EEEecCCC
Q 004103 209 RLLLTGTP 216 (773)
Q Consensus 209 rllLTgTP 216 (773)
.+++|+.+
T Consensus 78 ii~ls~~~ 85 (142)
T 2qxy_A 78 VAVLSAYV 85 (142)
T ss_dssp EEEEESCC
T ss_pred EEEEECCC
Confidence 78888864
No 429
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=21.53 E-value=62 Score=34.43 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=17.7
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTI 92 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~ai 92 (773)
++...-.|.|+ |+| ..+|+|||.++.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 33333356665 555 789999999874
No 430
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=21.45 E-value=1.6e+02 Score=24.95 Aligned_cols=17 Identities=6% Similarity=-0.013 Sum_probs=8.2
Q ss_pred CCCChhhHHHHhhhhhh
Q 004103 461 SDWNPQMDQQAEDRAHR 477 (773)
Q Consensus 461 ~~wNp~~~~Qa~gRa~R 477 (773)
-|.++....+++.++.+
T Consensus 108 kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 108 KPIEPGRLMETLEDFRH 124 (137)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 34455555555444443
No 431
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=21.42 E-value=3.7e+02 Score=22.65 Aligned_cols=73 Identities=12% Similarity=-0.014 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCCC--CCcEEEEEecccccc-cCCcccCCeeEEeCCCCChhhHHHHhhhhhh
Q 004103 405 DFKFLRLDGSTKTEERGTLLKQFNAPD--SPYFMFLLSTRAGGL-GLNLQTADTVIIFDSDWNPQMDQQAEDRAHR 477 (773)
Q Consensus 405 g~~~~~i~G~~~~~eR~~~i~~Fn~~~--~~~~v~LlSt~agg~-GLNL~~ad~VI~~D~~wNp~~~~Qa~gRa~R 477 (773)
.+..+.+|-.++..+-..++...+... ....+++++...... -...-.+...-++--|.++....+++.++.+
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 46 HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp CCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHh
Confidence 455666665555544444444444322 223344444332111 1111111111222345566666666655543
No 432
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=21.32 E-value=2.2e+02 Score=34.49 Aligned_cols=82 Identities=13% Similarity=0.129 Sum_probs=53.5
Q ss_pred EEecCCHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHhCCCCcccccccchhhHHHHhhcchHHHHHHHHHHh
Q 004103 298 LKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKL 377 (773)
Q Consensus 298 v~~~~s~~q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~Lrk~~~hP~l~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l 377 (773)
..+++++.|.+....+.......+...+ .+||-....-.+..+
T Consensus 36 ~~f~l~~~Q~~aI~~il~g~~vlv~apT-------------------------------------GsGKTlv~~~~i~~~ 78 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQGDSVFVAAHT-------------------------------------SAGKTVVAEYAIAMA 78 (997)
T ss_dssp CSSCCCHHHHHHHHHHHTTCEEEEECCT-------------------------------------TSCSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEECC-------------------------------------CCcHHHHHHHHHHHH
Confidence 3467899999999888764333322222 233333222223333
Q ss_pred hhcCCcEEEEeecHHHHHHHHHHHHhC--CCeEEEEcCCCC
Q 004103 378 RKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTK 416 (773)
Q Consensus 378 ~~~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~ 416 (773)
...+.++||.+.....+.-+.+.|... ++.+..++|+++
T Consensus 79 ~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~ 119 (997)
T 4a4z_A 79 HRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ 119 (997)
T ss_dssp HHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE
T ss_pred HhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 446779999999998888888888764 778999999865
No 433
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=20.84 E-value=72 Score=30.93 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=23.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 004103 78 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 112 (773)
Q Consensus 78 ILademGlGKTi~aiali~~l~~~~~~~gp~LIVv 112 (773)
+...--|.|||.+++.++..+.... ..++|+|=
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~--g~~VlliD 41 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEP--DIHVLAVD 41 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTST--TCCEEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhCc--CCCEEEEE
Confidence 4456679999999999988886541 23666663
No 434
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=20.80 E-value=48 Score=34.67 Aligned_cols=22 Identities=27% Similarity=0.167 Sum_probs=17.7
Q ss_pred CeEEecCCCCCHHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~ 97 (773)
..+|+.+||+|||..+..++..
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999888777653
No 435
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=20.76 E-value=2.1e+02 Score=24.90 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=44.6
Q ss_pred CceEEEecCChhHHHHHHHHHHhhcCCccEEEcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHc-cccce
Q 004103 130 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-YQIQR 208 (773)
Q Consensus 130 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~-~~~~~ 208 (773)
..+++++......+..+...+.. .++.|..++ ....-...+....+++||+|-.-- ......+.+.++. .....
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~--~g~~v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ 81 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKR--LGCNIITFT--SPLDALEALKGTSVQLVISDMRMP-EMGGEVFLEQVAKSYPDIE 81 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHT--TTCEEEEES--CHHHHHHHHTTSCCSEEEEESSCS-SSCHHHHHHHHHHHCTTSE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHH--cCCeEEEeC--CHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHHhCCCCc
Confidence 34566666666666655554433 345544332 112223445566799999995321 1123344555543 34556
Q ss_pred EEEecCCCC
Q 004103 209 RLLLTGTPI 217 (773)
Q Consensus 209 rllLTgTP~ 217 (773)
.+++|+.+-
T Consensus 82 ii~ls~~~~ 90 (154)
T 2rjn_A 82 RVVISGYAD 90 (154)
T ss_dssp EEEEECGGG
T ss_pred EEEEecCCC
Confidence 788888653
No 436
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=20.72 E-value=76 Score=32.02 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=27.7
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe--C-CcchHHHHH
Q 004103 80 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA--P-KAVLPNWIN 122 (773)
Q Consensus 80 ademGlGKTi~aiali~~l~~~~~~~gp~LIVv--P-~sll~qW~~ 122 (773)
..--|.|||.+++.++..+... ..++|+|= | ...+..|..
T Consensus 11 s~KGGvGKTT~a~nLA~~La~~---G~~VlliD~D~~q~~l~~~l~ 53 (286)
T 2xj4_A 11 NEKGGAGKSTIAVHLVTALLYG---GAKVAVIDLDLRQRTSARFFE 53 (286)
T ss_dssp CSSSCTTHHHHHHHHHHHHHHT---TCCEEEEECCTTTCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCCCCCCHHHHhC
Confidence 4567999999999999888764 23666653 4 445555643
No 437
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=20.70 E-value=63 Score=30.11 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=17.0
Q ss_pred CCCeEEecCCCCCHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIA 96 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~ 96 (773)
+...+|.-.+|+|||.++-.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34468899999999987655543
No 438
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=20.69 E-value=54 Score=34.69 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=17.6
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTI 92 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~ai 92 (773)
++...-+|.++ |+| ..+|+|||.++.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 33333356665 554 799999999874
No 439
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=20.69 E-value=83 Score=31.41 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=18.7
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHH
Q 004103 74 NLNGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 74 ~~~gILademGlGKTi~aiali~~ 97 (773)
+...+|.-.+|+|||..+-.++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 667789999999999876555543
No 440
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=20.62 E-value=65 Score=29.58 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=17.0
Q ss_pred CeEEecCCCCCHHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~ 97 (773)
..+|.-.+|+|||.++-.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4678899999999887666543
No 441
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=20.51 E-value=2.6e+02 Score=27.15 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=36.2
Q ss_pred cchHHHHHHHHHHhhhcCCcEEEEeecHHHHHHHHHHHHhCCCe-EEEEcCCCC
Q 004103 364 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFK-FLRLDGSTK 416 (773)
Q Consensus 364 s~K~~~L~~ll~~l~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~-~~~i~G~~~ 416 (773)
+||-.....++..+ +.++||++.....++.+...+...++. +..++|...
T Consensus 119 ~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 119 SGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (237)
T ss_dssp TTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB
T ss_pred CCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 45544444444332 678999999988888888887777888 888988764
No 442
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=20.46 E-value=1.1e+02 Score=32.27 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=17.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAYL 98 (773)
Q Consensus 77 gILademGlGKTi~aiali~~l 98 (773)
.+|...+|+|||..+-+++..+
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6788999999998876665544
No 443
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=20.45 E-value=82 Score=33.20 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=20.1
Q ss_pred HHHHHhhcCCCCe-EEe-cCCCCCHHHHHH
Q 004103 65 QWMLSLFNNNLNG-ILA-DEMGLGKTIQTI 92 (773)
Q Consensus 65 ~~l~~~~~~~~~g-ILa-demGlGKTi~ai 92 (773)
.-++...-.|.|+ |+| ..+|+|||.++.
T Consensus 74 ~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 74 GQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 3466655567765 555 789999999985
No 444
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=20.45 E-value=58 Score=30.07 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=16.0
Q ss_pred eEEecCCCCCHHHHHHHHHHH
Q 004103 77 GILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 77 gILademGlGKTi~aiali~~ 97 (773)
.+|...+|+|||.++-.+...
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 467889999999887655543
No 445
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=20.37 E-value=64 Score=29.84 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=16.4
Q ss_pred CeEEecCCCCCHHHHHHHHHHH
Q 004103 76 NGILADEMGLGKTIQTIALIAY 97 (773)
Q Consensus 76 ~gILademGlGKTi~aiali~~ 97 (773)
..+|.-.+|+|||.++-.+...
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999887555543
No 446
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=20.25 E-value=54 Score=35.21 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=17.8
Q ss_pred HHHhhcCCCCe-EEe-cCCCCCHHHHHHH
Q 004103 67 MLSLFNNNLNG-ILA-DEMGLGKTIQTIA 93 (773)
Q Consensus 67 l~~~~~~~~~g-ILa-demGlGKTi~aia 93 (773)
++...-+|.++ |+| ..+|+|||.++..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 34433356665 555 7999999999755
No 447
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=20.16 E-value=3.5e+02 Score=23.30 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=43.9
Q ss_pred ceEEEecCChhHHHHHHHHHHhhcCCccEE--EcCHHHHHHhHHHHhhcCeeEEEEccccccCChhhHHHHHHHc-cccc
Q 004103 131 IAAVVYDGRPDERKAMREEFFSERGRFNVL--ITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-YQIQ 207 (773)
Q Consensus 131 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~Vv--ItTye~l~~~~~~l~~~~~~~vIiDEaH~lkn~~s~~~~~l~~-~~~~ 207 (773)
.+++++......+..+...+... ..+.++ ..+.+... ..+....+++||+|-.-- ......+.+.++. ....
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~-~~~~v~~~~~~~~~a~---~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~ 80 (153)
T 3cz5_A 6 ARIMLVDDHPIVREGYRRLIERR-PGYAVVAEAADAGEAY---RLYRETTPDIVVMDLTLP-GPGGIEATRHIRQWDGAA 80 (153)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTS-TTEEEEEEESSHHHHH---HHHHTTCCSEEEECSCCS-SSCHHHHHHHHHHHCTTC
T ss_pred cEEEEECCcHHHHHHHHHHHhhC-CCcEEEEEeCCHHHHH---HHHhcCCCCEEEEecCCC-CCCHHHHHHHHHHhCCCC
Confidence 45666666666665555544321 244443 33443332 345566799999995321 1123344555543 3455
Q ss_pred eEEEecCCC
Q 004103 208 RRLLLTGTP 216 (773)
Q Consensus 208 ~rllLTgTP 216 (773)
..+++|+.+
T Consensus 81 ~ii~ls~~~ 89 (153)
T 3cz5_A 81 RILIFTMHQ 89 (153)
T ss_dssp CEEEEESCC
T ss_pred eEEEEECCC
Confidence 678888765
Done!