BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004104
         (773 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2UY1|A Chain A, Crystal Structure Of Cstf-77
          Length = 493

 Score = 33.5 bits (75), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 11/119 (9%)

Query: 218 EEENKCEDHSLEILEHVKINN----TLETPRSTLKGVFKDSKDDELRFRKEELRKVEGQL 273
           EEE K ED    I    KI N     L+TP  +L  ++KD ++ EL   K   +K+ G  
Sbjct: 93  EEEGKIEDEQTRI---EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149

Query: 274 RVVFIEFYQKLR----LLKNYSFMNLAAFSKIMKKYDKITSTRASRSYMKIVDNSYLGS 328
             +F   +Q+ +    L++ +S  N A    +  +       R   S M  + N  L S
Sbjct: 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS 208


>pdb|1AOH|A Chain A, Single Cohesin Domain From The Scaffolding Protein Cipa Of
           The Clostridium Thermocellum Cellulosome
 pdb|1AOH|B Chain B, Single Cohesin Domain From The Scaffolding Protein Cipa Of
           The Clostridium Thermocellum Cellulosome
          Length = 147

 Score = 31.6 bits (70), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 147 LIALRIKVDTKNASPDNATAVPLRTS 172
           L A+RIKVDT NA P +   +P+R S
Sbjct: 3   LDAVRIKVDTVNAKPGDTVRIPVRFS 28


>pdb|2UY1|B Chain B, Crystal Structure Of Cstf-77
          Length = 493

 Score = 29.6 bits (65), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 11/119 (9%)

Query: 218 EEENKCEDHSLEILEHVKINN----TLETPRSTLKGVFKDSKDDELRFRKEELRKVEGQL 273
           EE  K ED    I    KI N     L+TP  +L  ++KD ++ EL   K   +K+ G  
Sbjct: 93  EELGKIEDEQTRI---EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149

Query: 274 RVVFIEFYQKLR----LLKNYSFMNLAAFSKIMKKYDKITSTRASRSYMKIVDNSYLGS 328
             +F   +Q+ +    L++ +S  N A    +  +       R   S M  + N  L S
Sbjct: 150 LPLFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS 208


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,429,427
Number of Sequences: 62578
Number of extensions: 785255
Number of successful extensions: 1485
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1480
Number of HSP's gapped (non-prelim): 12
length of query: 773
length of database: 14,973,337
effective HSP length: 106
effective length of query: 667
effective length of database: 8,340,069
effective search space: 5562826023
effective search space used: 5562826023
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)