Query 004104
Match_columns 773
No_of_seqs 308 out of 994
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 17:37:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004104.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004104hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1162 Predicted small molecu 100.0 1E-143 2E-148 1213.6 52.9 611 1-768 1-613 (617)
2 PF03124 EXS: EXS family; Int 100.0 7E-80 1.5E-84 677.4 29.0 335 411-747 2-345 (345)
3 COG5409 EXS domain-containing 100.0 6.4E-63 1.4E-67 513.3 20.3 367 373-760 4-380 (384)
4 PF03105 SPX: SPX domain; Int 100.0 7.2E-33 1.6E-37 293.0 20.9 269 1-321 1-274 (275)
5 KOG1161 Protein involved in va 100.0 3.2E-30 7E-35 269.6 18.1 177 1-352 1-177 (310)
6 COG5036 SPX domain-containing 99.9 1.1E-22 2.4E-27 216.4 15.1 168 1-351 1-168 (509)
7 COG5408 SPX domain-containing 99.8 2.1E-19 4.6E-24 188.2 16.9 55 267-321 237-291 (296)
8 COG3872 Predicted metal-depend 65.0 39 0.00085 35.9 9.1 75 431-534 171-245 (318)
9 PF03904 DUF334: Domain of unk 53.8 2.9E+02 0.0062 29.0 13.7 41 265-312 72-112 (230)
10 PF05297 Herpes_LMP1: Herpesvi 37.3 11 0.00024 40.3 0.0 16 494-509 167-182 (381)
11 PRK00068 hypothetical protein; 35.8 2.1E+02 0.0046 36.3 10.5 13 596-608 380-392 (970)
12 KOG1281 Na+/dicarboxylate, Na+ 34.8 31 0.00067 40.8 3.1 38 283-320 10-49 (586)
13 PF14193 DUF4315: Domain of un 34.3 1.2E+02 0.0027 26.8 6.0 35 113-151 4-38 (83)
14 KOG4466 Component of histone d 33.9 70 0.0015 34.4 5.2 45 106-150 13-57 (291)
15 PF07136 DUF1385: Protein of u 31.3 5.8E+02 0.013 27.1 11.4 39 419-457 90-131 (236)
16 PF15038 Jiraiya: Jiraiya 29.8 2.1E+02 0.0045 28.9 7.5 58 372-438 109-166 (175)
17 PF11120 DUF2636: Protein of u 28.2 95 0.0021 26.0 4.0 34 500-533 9-42 (62)
18 TIGR02230 ATPase_gene1 F0F1-AT 27.4 2.5E+02 0.0054 25.8 6.9 18 419-436 80-97 (100)
19 PF04133 Vps55: Vacuolar prote 25.5 2E+02 0.0044 27.2 6.3 75 587-667 33-119 (120)
20 PF08733 PalH: PalH/RIM21; In 24.2 6.1E+02 0.013 28.4 10.9 24 298-323 136-159 (348)
21 cd02682 MIT_AAA_Arch MIT: doma 22.9 1.1E+02 0.0025 26.5 3.7 24 121-144 47-70 (75)
22 PF04568 IATP: Mitochondrial A 22.3 3E+02 0.0066 25.2 6.5 38 107-144 61-99 (100)
23 PF03189 Otopetrin: Otopetrin; 20.5 1.3E+03 0.028 26.8 12.8 12 373-384 239-250 (441)
No 1
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-143 Score=1213.58 Aligned_cols=611 Identities=51% Similarity=0.887 Sum_probs=550.5
Q ss_pred CCcccchhcCCChhhHHhcCChhhHHHHHHHHHhhhccCCCCCchhhhhhhhhhhhccccCccccccccCCCCCcccccc
Q 004104 1 MKFGKEFKKQKVPEWIDAYMDYSGLKQILREIMLHKLSRQPPTPLRAIKQKLKLHRTFSGLHAKSRDFVSQGDIEDQVID 80 (773)
Q Consensus 1 MKFgk~l~~~~vPEW~~~YidYk~LKk~Ik~i~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~e~~~i~ 80 (773)
|||||+|++|+||||+++||||+.|||+||++.+.+++.
T Consensus 1 MKFgk~~~~q~~pEW~~ay~dY~~lK~~l~~i~~~~~~~----------------------------------------- 39 (617)
T KOG1162|consen 1 MKFGKELESQLVPEWRQAYIDYKYLKKLLKEIIENKPSS----------------------------------------- 39 (617)
T ss_pred CcchHHHHHhcCHHHHHHhhhHHHHHHHHHHHHhcCCCc-----------------------------------------
Confidence 999999999999999999999999999999999743321
Q ss_pred ccccCCCCCCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 004104 81 VEALPRDGSGHFYRTNFLRQSEEGGEIEEMFFEKLDQELNKVNKFYKDKVEAVMSEAAELNKQMDALIALRIKVDTKNAS 160 (773)
Q Consensus 81 v~~~~~~~~~~~y~t~~l~~~~~~~~~e~~Ff~~Ld~ELeKVn~FY~~Ke~E~~~r~~~L~kQl~~l~~~~~~~~~~~~~ 160 (773)
.+|++++..+++++.|..||++||+||+|||+||++|++|+.+|++.|++||+++++.|.. .+
T Consensus 40 ------------~~t~~~~~~~~~~~~~~~Ff~~ld~el~Kvn~Fy~~k~~e~~~~~~~L~~ql~~~~~~r~~-~~---- 102 (617)
T KOG1162|consen 40 ------------EETTFLMVSEEGGEFEEVFFRRLDEELNKVNKFYKEKVKEAREEAEELNKQLDALIALRVK-SR---- 102 (617)
T ss_pred ------------CccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc----
Confidence 1334444456668999999999999999999999999999999999999999999998722 00
Q ss_pred CCCCCCCCcccccccccCCCcccccccCCCCCcccCCCCCCCCcccccccCCCCCccccccccccchhhhHhhhhccCCC
Q 004104 161 PDNATAVPLRTSTRTLASDCTDLTIGVDTSNNYQEGELTGGPEVSEVTTANCSSDCKEEENKCEDHSLEILEHVKINNTL 240 (773)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (773)
.+. +. ++ . ++. .
T Consensus 103 --------~~~------------------------~~--~~----~------------------~~~--------~---- 114 (617)
T KOG1162|consen 103 --------SSV------------------------DI--SD----R------------------AAR--------L---- 114 (617)
T ss_pred --------ccc------------------------cc--cc----c------------------cch--------h----
Confidence 000 00 00 0 000 0
Q ss_pred CCCccccccccCCCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccCCcccHHHHHH
Q 004104 241 ETPRSTLKGVFKDSKDDELRFRKEELRKVEGQLRVVFIEFYQKLRLLKNYSFMNLAAFSKIMKKYDKITSTRASRSYMKI 320 (773)
Q Consensus 241 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Lk~a~~e~Y~~L~~Lk~y~~LN~tgF~KIlKK~DK~~~~~~~~~y~~~ 320 (773)
...++++ +++++++||.|++|+|+.|.+||+|++||.|||+||+|||||+++++. ..|++.
T Consensus 115 -----------------~~~f~~~-~~~~e~~lk~af~Efy~~L~llk~y~~lN~~~f~KI~KKyDK~~~~~~-~~~~~~ 175 (617)
T KOG1162|consen 115 -----------------RGKFTKV-LRKAEEKLKLAFSEFYLKLRLLKNYQFLNVTAFRKILKKYDKITSRDA-KRYVKM 175 (617)
T ss_pred -----------------hhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch-HHHHHH
Confidence 0115666 899999999999999999999999999999999999999999999999 899999
Q ss_pred chhcCCCChhhHHHHHHHHHHHHHHHhcCCCHHHHhhhcCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHHhhhcccCc
Q 004104 321 VDNSYLGSSDDVTSLLEKVETTFISHFSNSNRKDGMKSLRPKGKKERHGVTFLSGFFSGCSIALLIAVVLRIEARDLMDK 400 (773)
Q Consensus 321 v~~~~f~~~~~l~~l~~~ve~ly~~~f~~gd~~~a~~~Lr~~~~~~~~~~~f~~G~f~G~~~~l~i~~~~~~~~~~~~~~ 400 (773)
|+.++|.+++++++|+.+||++|+++|++|||++||+.||++ ++++|+.+|.+||++||++.+.++++++++.+.++.+
T Consensus 176 v~~s~f~~~~~i~~l~~~Ve~~f~~~fan~nr~~~m~~lr~~-~~e~h~~~~~~~f~~g~~~~l~val~~~~~~~~~~~~ 254 (617)
T KOG1162|consen 176 VDKSYFTSSDEITRLMLEVEETFTKHFANGNRRKAMKVLRPK-LKEKHRPTFSTGFFVGCGIGLSVALVALIYLRNILQS 254 (617)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHhCCChhHhhhhcCCc-ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999 8899999999999999999999999998888887776
Q ss_pred cccchhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhcCCCcceEeeecCCCcchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 004104 401 KEGASYLVNIFPLYSLFAYAILHMLMYAADIYFWRRYRVNYPFILGFKQGTVLSYREVFLLSTGLAVLALSSFLANLHLD 480 (773)
Q Consensus 401 ~~~~~~~~~~~pl~~~~~l~~l~~~l~~~n~~iw~~~~INy~~IFe~~~~~~l~~~~~~~~~~~l~~~~l~~~~~~l~~~ 480 (773)
+ +..|+.+++|+|+ +++++++++++|+|+|+|+++||||+||||+++++++++++++++++..++++.++++.++++.
T Consensus 255 ~-~~~~~~~~~~l~~-~~~v~l~~fl~~~niy~W~~~rVNy~fIf~~~~~~~l~~~~~l~i~~~~~~~~~l~~l~~l~~~ 332 (617)
T KOG1162|consen 255 E-QRFYMETMFPLYG-FGLVVLHKFLYNVNIYEWSRTRVNYKFIFEFDQRTELGYRDILLIHNTNGILEFLPVLKNLDMS 332 (617)
T ss_pred c-chhHHHHHHHHHH-HHHHHHHHHHhcCchHHHHHhcCCceeeecCCccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5 7889999999999 9999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cCccccchhcccchhhHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhhhhcccccccccCceeeehhhhhHHHHhhhhhh
Q 004104 481 MGSRTEHYRKLTELVPLFSITIVIVIIFCPFDIIYRSSRLFFIKSATHCFCAPLYKVTLPDFLLADNITSQVQAIRSIEL 560 (773)
Q Consensus 481 ~~~~~~~~~~~~~~~Pl~l~~~~l~~l~~P~~i~~~~~R~~~l~~l~ril~~p~~~V~F~DfflaDqltSl~~~l~D~~~ 560 (773)
+++.+ ++++|+++++++++++++|++++|+++|+|++++++||+.+|+++|.|+|||+|||+||++.+++|+++
T Consensus 333 ~~~~~------~~~~Pl~ll~~~~~~L~~Pf~~fY~sSRf~ll~~l~rvi~spl~~V~~~DFfl~Dql~S~v~a~~~l~~ 406 (617)
T KOG1162|consen 333 MSGQT------TELSPLILLLLFFFLLVCPFNTFYRSSRFWLLKRLFRVLSSPLYKVLFVDFFLADQLTSLVLALRDLEF 406 (617)
T ss_pred cCCCC------cccchHHHHHHHHheeeccchhhhHhhHHHHHHHHHHHHhccceeeccccccHHHHHHHHHHHHHhHHH
Confidence 66432 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCCCCcccccccchhHHHHHHHhHHHHHHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHhhccCCc
Q 004104 561 YICYYGLGESSQRQSKCHTHGIYNAFYFIVAIVPFWLRFLQCLRRLCEEKDAVHGWNGLKYLLIIIAVLIRTAFELKKGT 640 (773)
Q Consensus 561 ~~C~~~~~~~~~~~~~C~~~~~~~~~~~i~~~lP~~~R~~QClRry~dt~~~~hl~Na~KY~s~~~~~~~~~~~~~~~~~ 640 (773)
++|+|++|+|..++ +|..++.+..+.++++++|+|+|++||+|||.|++..+||+||+||+++++++.+.++|+..++.
T Consensus 407 ~~C~y~~~~~~~~~-~~~~~~~~~~~~~iva~lP~~~RfLQClRR~~d~~~~~hL~NAlKY~~~i~~v~~~~~y~~~~~~ 485 (617)
T KOG1162|consen 407 FICYYGTGDFQARR-TCYCKDDYIEFQSIVAVLPYWFRFLQCLRRYRDEKAFPHLLNALKYSTTILAVMLTTLYRILPGS 485 (617)
T ss_pred hheeeccccccccc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999887554 67666667778899999999999999999999998899999999999999999999999998875
Q ss_pred -hhHHHHHHHHHHhhHHHHHHHhhhhccCcccCCCCccccccccccCchhhhHHHHHHHHHHHHHHHHHH-hhcccchhh
Q 004104 641 -TWFVLALASSAVAVAMSTYWDIVMDWGLLRRKSKNTYLRDNLVISNKSVYFAAMVLNIVLRVAWMQLVI-EFNLHSLQK 718 (773)
Q Consensus 641 -~w~~~~~~~~~i~s~Ys~~WDv~mDWgL~~~~~~~~~LR~~l~y~~~~~Yy~aiv~n~ilRf~W~~~~~-~~~~~~~~~ 718 (773)
.|+++|++++.+||+|+++||++|||||+.++++ +|||++++||+|++||+||+.|++|||+|++.++ .+..... .
T Consensus 486 ~~~~~l~~~~s~vaS~y~~~WDvv~DWgLl~~~~~-~~lRd~l~~p~k~vYy~aiv~N~vLR~aW~~~~i~~~~~~~~-~ 563 (617)
T KOG1162|consen 486 SLWFALWILSSKVASLYTTYWDVVMDWGLLNRKSK-PWLRDNLLYPQKWVYYSAIVLNFVLRFAWFFKTILVFHEEFL-S 563 (617)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHheecccccccCc-hhhHHHhcccchheehhHHHHHHHHHHHHHHHHHHHHHHhhh-H
Confidence 9999999999999999999999999999999998 9999999999999999999999999999976654 3332222 7
Q ss_pred hHHHHHHHHHHHHhhhceeeeeehhhhhhccCCceeccccCCCCCCCccc
Q 004104 719 MAITTIISCLEVFRRGIWNFFRLENEHLNNVGKYRAFKSVPLPFSYNDEE 768 (773)
Q Consensus 719 ~~~~~~~~~lEi~RR~iWnffRvEnEhl~N~~~fRa~~~iplP~~~~~~~ 768 (773)
+.++++++++||+||++||||||||||+||||+|||+++||+|++.+|++
T Consensus 564 ~~~~~i~a~LEIiRRfiWnfFRLEnEhlnN~g~fRa~~~v~l~~~~~~~~ 613 (617)
T KOG1162|consen 564 DSMVFIMALLEIIRRFIWNFFRLENEHLNNVGKFRAFRDVPLPFSYMDES 613 (617)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhccccccCCchhhhcccc
Confidence 78899999999999999999999999999999999999999999887544
No 2
>PF03124 EXS: EXS family; InterPro: IPR004342 The EXS domain is named after ERD1/XPR1/SYG1 and proteins containing this motif include the C-terminal of the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be Murine leukemia virus (MLV) receptors (XPR1. The N-terminal of these proteins often have an SPX domain (IPR004331 from INTERPRO) []. While the N-terminal is thought to be involved in signal transduction, the role of the C-terminal is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) S. cerevisiae proteins. ERD1 proteins are involved in the localization of endogenous endoplasmic reticulum (ER) proteins. Erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localization label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=7e-80 Score=677.38 Aligned_cols=335 Identities=36% Similarity=0.686 Sum_probs=298.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhcCCCcceEeeecCCCcchhHHHHHHHHHHHHHHHHHHHHhhccccCccccc-hh
Q 004104 411 FPLYSLFAYAILHMLMYAADIYFWRRYRVNYPFILGFKQGTVLSYREVFLLSTGLAVLALSSFLANLHLDMGSRTEH-YR 489 (773)
Q Consensus 411 ~pl~~~~~l~~l~~~l~~~n~~iw~~~~INy~~IFe~~~~~~l~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~ 489 (773)
+|+||+++++++++|+||+|+++|+++||||++|||+||++++++++++.++++++++++++++.++.......... ..
T Consensus 2 ~~~~R~~~L~~l~~~l~~~nl~v~~~~~Iny~~If~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 81 (345)
T PF03124_consen 2 PPPFRGLLLLILGLWLWGINLYVWSRYRINYVFIFELDPRNSLSYRQLFELASFLTIIWLLCFLIYLASVSPSIISFANW 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHhcCCcccCCcHHHHHhhhHHHHHHHHHHHHHHHHHHcCCcccccch
Confidence 57899999999999999999999999999999999999999999999999998888888777776653322111111 11
Q ss_pred cccchhhHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhhhhcccccccccCceeeehhhhhHHHHhhhhhhhhhhcccCC
Q 004104 490 KLTELVPLFSITIVIVIIFCPFDIIYRSSRLFFIKSATHCFCAPLYKVTLPDFLLADNITSQVQAIRSIELYICYYGLGE 569 (773)
Q Consensus 490 ~~~~~~Pl~l~~~~l~~l~~P~~i~~~~~R~~~l~~l~ril~~p~~~V~F~DfflaDqltSl~~~l~D~~~~~C~~~~~~ 569 (773)
...+++|+++++++++++++|++++++++|+|++++++|++.+|+.+|+|+|||+||||||++++++|+++++|+|..+.
T Consensus 82 ~~~~~~Pll~~~~~~~~l~~P~~~~~~~~R~~~~~~l~ril~~~~~~v~f~d~~laD~LtS~~~~l~D~~~~~c~~~~~~ 161 (345)
T PF03124_consen 82 YFVEYIPLLLLLILLLLLFFPFNIFYRSSRRWFLRTLKRILLAPFYPVRFRDFFLADQLTSLSKVLGDLEFTICYYFSGS 161 (345)
T ss_pred hhHHHhhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc
Confidence 12347899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCcccccccchhHHHHHHHhHHHHHHHHHHHHhhhcCCc-chhhHHHHHHHHHHHHHHHHHhhccCCch----hHH
Q 004104 570 SSQRQSKCHTHGIYNAFYFIVAIVPFWLRFLQCLRRLCEEKDA-VHGWNGLKYLLIIIAVLIRTAFELKKGTT----WFV 644 (773)
Q Consensus 570 ~~~~~~~C~~~~~~~~~~~i~~~lP~~~R~~QClRry~dt~~~-~hl~Na~KY~s~~~~~~~~~~~~~~~~~~----w~~ 644 (773)
+...+++|++.+.+ ..++++++|++||++||+|||+||++. +||+||+||++++++++++..++..++.. +..
T Consensus 162 ~~~~~~~c~~~~~~--~~~~~~~lP~~iR~~QClrry~~~~~~~~hL~Na~KY~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (345)
T PF03124_consen 162 FTSPSNQCGSSSWY--IDPIVASLPYWIRFLQCLRRYRDTGDRFPHLFNALKYSSSIPVIILSALYRFYPSSDSSIWLFI 239 (345)
T ss_pred ccCCCCcCccccHh--HHhHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHH
Confidence 65567899987654 348999999999999999999999998 99999999999999999888877665533 788
Q ss_pred HHHHHHHHhhHHHHHHHhhhhccCcccC--CCCccccccccccCchhhhHHHHHHHHHHHHHHHHHHhhccc-chhhhHH
Q 004104 645 LALASSAVAVAMSTYWDIVMDWGLLRRK--SKNTYLRDNLVISNKSVYFAAMVLNIVLRVAWMQLVIEFNLH-SLQKMAI 721 (773)
Q Consensus 645 ~~~~~~~i~s~Ys~~WDv~mDWgL~~~~--~~~~~LR~~l~y~~~~~Yy~aiv~n~ilRf~W~~~~~~~~~~-~~~~~~~ 721 (773)
+|++++++||+||++|||+|||||++++ +++++||++++||+|++||+||+.|+++||+|++++++.... ..+.+.+
T Consensus 240 ~w~~~~~i~s~Ys~~WDv~~DWgL~~~~~~~~~~~LR~~l~~~~~~~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~~~~~~ 319 (345)
T PF03124_consen 240 LWIIFALINSLYSFYWDVKMDWGLFQPKKKSKNWLLRRRLLYPRKWFYYFAIILNFILRFAWILTLSPPHFSHIDNSEIF 319 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCccccCCCCCccccccCCcchhhhHHHHHHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 8999999999999999999999999987 789999999999999999999999999999999998875432 3467888
Q ss_pred HHHHHHHHHHhhhceeeeeehhhhhh
Q 004104 722 TTIISCLEVFRRGIWNFFRLENEHLN 747 (773)
Q Consensus 722 ~~~~~~lEi~RR~iWnffRvEnEhl~ 747 (773)
.++++++||+||++||||||||||+|
T Consensus 320 ~~~~~~lEi~RR~iWnffRlE~Ehin 345 (345)
T PF03124_consen 320 IFILAILEIFRRFIWNFFRLENEHIN 345 (345)
T ss_pred HHHHHHHHHHHHHhhheeeeeHhhcC
Confidence 99999999999999999999999997
No 3
>COG5409 EXS domain-containing protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-63 Score=513.33 Aligned_cols=367 Identities=25% Similarity=0.400 Sum_probs=286.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhcccCccccchh-hhhhhhHhHHHHHHHHHHHHHHHHHHHHHhcCCCcceEeeecCCC
Q 004104 373 LSGFFSGCSIALLIAVVLRIEARDLMDKKEGASY-LVNIFPLYSLFAYAILHMLMYAADIYFWRRYRVNYPFILGFKQGT 451 (773)
Q Consensus 373 ~~G~f~G~~~~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~pl~~~~~l~~l~~~l~~~n~~iw~~~~INy~~IFe~~~~~ 451 (773)
++|+-.|.++.+...++.+ ++.+++..+ ..-++++|.+..+..+...++.+|+|+|.|.+|||++||.++..+
T Consensus 4 vv~~~~g~~l~l~~~i~~l------~~~~~~~~~~~~ill~lw~~~~l~~~~~~lf~v~~~i~~r~~inyr~i~~~e~~~ 77 (384)
T COG5409 4 VVGLEKGVSLSLGLYIQNL------LNVGEPQSFIVLILLALWGGWILVFFLAFLFDVSCYILTRTPINYRFIFLFEQLS 77 (384)
T ss_pred eeeeeccccccHHHHHHHh------eeCCchHHHHHHHHHHHHhHHHHHHHHHHHhcCceeeEEeccccchhhhhHhHhh
Confidence 4577777776665444333 232222223 345688888888888888999999999999999999999987754
Q ss_pred c----chhHHHHHHHHHHHHHHHHHHHHhhccc-cCccccchhcccchhhHHHHHHHHHHHhcchhhhhhhHHHHHHHHh
Q 004104 452 V----LSYREVFLLSTGLAVLALSSFLANLHLD-MGSRTEHYRKLTELVPLFSITIVIVIIFCPFDIIYRSSRLFFIKSA 526 (773)
Q Consensus 452 ~----l~~~~~~~~~~~l~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~Pl~l~~~~l~~l~~P~~i~~~~~R~~~l~~l 526 (773)
. ...+... +.+...++..+++.++... ++.. ......++|+++++++..++++|+++.++.+|+|++.++
T Consensus 78 ~~a~~~~~dfh~--~~i~~~~~~~slfiFl~~v~g~~~---~l~~~~~~P~l~v~~vf~~ll~Pf~ii~y~sRr~Li~sl 152 (384)
T COG5409 78 STARNFNLDFHR--IIIPFHFFTTSLFIFLNAVEGLKF---ILLFVYFLPLLQVGTVFWFLLKPFQIIYYWSRRYLIESL 152 (384)
T ss_pred hhhcccchhhHH--HhhhHHHHHHHHHHHHHHhhcccc---ceehhhhccHHHHHHHHHHhhcccceeeecchhhHHHHH
Confidence 3 3222211 1112222222322222111 1111 112357899999999999999999999999999999999
Q ss_pred hhhhcccccccccCceeeehhhhhHHHHhhhhhhhhhhcccCCCCCCCCcccccccchhHHHHHHHhHHHHHHHHHHHHh
Q 004104 527 THCFCAPLYKVTLPDFLLADNITSQVQAIRSIELYICYYGLGESSQRQSKCHTHGIYNAFYFIVAIVPFWLRFLQCLRRL 606 (773)
Q Consensus 527 ~ril~~p~~~V~F~DfflaDqltSl~~~l~D~~~~~C~~~~~~~~~~~~~C~~~~~~~~~~~i~~~lP~~~R~~QClRry 606 (773)
.|++..|+.+|+|.||++||++||++++++|++.+.|+|..- +. .+ -|.+++.. +.++++++|.++|++||||||
T Consensus 153 iRv~l~~~~~v~f~dF~f~di~~SlTya~gdi~~FfCv~~~~-~~-~p-Lc~sshs~--~~g~~~~lP~ivR~lQCLRry 227 (384)
T COG5409 153 IRVFLFGYSLVRFTDFFFGDILISLTYALGDIYIFFCVYSLL-FR-EP-LCKSSHSD--LSGLAALLPVIVRFLQCLRRY 227 (384)
T ss_pred HHHHHhccceeeeeeeehhhHHHHHHHhhhhhhhHHHHHhhh-cc-cc-ccccCCcc--hHhHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999742 21 12 58777653 567899999999999999999
Q ss_pred hhcCC-cchhhHHHHHHHHHHHHHHHHHhhccC-CchhHHHHHHHHHHhhHHHHHHHhhhhccCcccCCCC-cccccccc
Q 004104 607 CEEKD-AVHGWNGLKYLLIIIAVLIRTAFELKK-GTTWFVLALASSAVAVAMSTYWDIVMDWGLLRRKSKN-TYLRDNLV 683 (773)
Q Consensus 607 ~dt~~-~~hl~Na~KY~s~~~~~~~~~~~~~~~-~~~w~~~~~~~~~i~s~Ys~~WDv~mDWgL~~~~~~~-~~LR~~l~ 683 (773)
.|+++ .+||+||+||++++++..+..+|+..+ +...++++++++.+||+||+.|||.|||++..+.++. +-.|+.++
T Consensus 228 ~ds~~~fphLlNALKYs~~i~v~~~~~~~r~~~~~~~l~~l~~~~a~lnS~yT~~WDV~mDW~l~~~~~~~~~~kr~~~~ 307 (384)
T COG5409 228 RDSLHEFPHLLNALKYSLNIPVLFCLWLYRVYEGEERLFHLQIWFALLNSIYTSFWDVFMDWSLDSLTSLRSWSKRAVTL 307 (384)
T ss_pred HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHhccCcceeehHHHHHHHHHHHHHHhHHhheeeeecccccchhccccchhH
Confidence 99976 599999999999999998888998877 4456678888999999999999999999998766544 55777776
Q ss_pred ccCchhhhHHHHHHHHHHHHHHHHHHhhcccchh-hhHHHHHHHHHHHHhhhceeeeeehhhhhhccCCceeccccCC
Q 004104 684 ISNKSVYFAAMVLNIVLRVAWMQLVIEFNLHSLQ-KMAITTIISCLEVFRRGIWNFFRLENEHLNNVGKYRAFKSVPL 760 (773)
Q Consensus 684 y~~~~~Yy~aiv~n~ilRf~W~~~~~~~~~~~~~-~~~~~~~~~~lEi~RR~iWnffRvEnEhl~N~~~fRa~~~ipl 760 (773)
++ |++||++|+++|++|++...+.. +..| .+...++++++||+|||+|++||||+||.+|+..+|+.++.++
T Consensus 308 l~----y~~a~~inFllR~~Wi~~~~~~~-~~~~~~~~~~F~m~~lEi~RR~vW~~FrveaE~~~n~~~~~~~~~~~~ 380 (384)
T COG5409 308 LK----YHIAMIINFLLRFSWIVYYLPPN-HIQHSADIFIFIMQLLEILRRFVWVFFRVEAEHSINFASFRAAGELKV 380 (384)
T ss_pred HH----HHHHHHHHHHHHHHHHHhhcchh-hhhhhhhhHHHHHHHHHHHHhheeeEEEeehHHHhhHHHhhhcccCCC
Confidence 64 99999999999999999876533 2333 2333478999999999999999999999999999999999983
No 4
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=100.00 E-value=7.2e-33 Score=292.99 Aligned_cols=269 Identities=31% Similarity=0.400 Sum_probs=144.7
Q ss_pred CCcccchhcCCChhhHHhcCChhhHHHHHHHHHhhhccCCCCCchh-hhhhhhhhhhccccCccccccccCCCCCccccc
Q 004104 1 MKFGKEFKKQKVPEWIDAYMDYSGLKQILREIMLHKLSRQPPTPLR-AIKQKLKLHRTFSGLHAKSRDFVSQGDIEDQVI 79 (773)
Q Consensus 1 MKFgk~l~~~~vPEW~~~YidYk~LKk~Ik~i~~~~~~~~~~~~~~-~~~~~~~l~~~~s~~~~~~~~~~~~~~~e~~~i 79 (773)
|||||+|+.++||||+++||||+.|||+||+++............. ......+ ...++...........+-
T Consensus 1 MKFgk~L~~~~vpEW~~~YidYk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 72 (275)
T PF03105_consen 1 MKFGKQLQENAVPEWRDKYIDYKQLKKLIKRIQNEKESLGLSAETLSSISISSS--------SSSSSRSSSNSFESTSPS 72 (275)
T ss_pred CCchHHHHHhcCHHHHHHhCCHHHHHHHHHHHHhhhhcccccccccchhhhhhh--------hhcccccccccccccccc
Confidence 9999999999999999999999999999999998655432111100 0000000 000000000000000000
Q ss_pred cccccCCCCCCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-
Q 004104 80 DVEALPRDGSGHFYRTNFLRQSEEGGEIEEMFFEKLDQELNKVNKFYKDKVEAVMSEAAELNKQMDALIALRIKVDTKN- 158 (773)
Q Consensus 80 ~v~~~~~~~~~~~y~t~~l~~~~~~~~~e~~Ff~~Ld~ELeKVn~FY~~Ke~E~~~r~~~L~kQl~~l~~~~~~~~~~~- 158 (773)
..... ..... ........+.+..||..||.||+|||.||..|+.|+..+++.|.+|+..+.+.+.......
T Consensus 73 ~~~~~-~~~~~-------~~~~~~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~~~~~~~~ 144 (275)
T PF03105_consen 73 SSNTS-PSSSN-------SEQNEDNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRSKSSDKYN 144 (275)
T ss_pred ccccc-ccccc-------cchhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 00000 00000 0011222457899999999999999999999999999999999999999988763221111
Q ss_pred CCCCCCCC-CCcccc--cccccCCCcccccccCCCCCcccCCCCCCCCcccccccCCCCCccccccccccchhhhHhhhh
Q 004104 159 ASPDNATA-VPLRTS--TRTLASDCTDLTIGVDTSNNYQEGELTGGPEVSEVTTANCSSDCKEEENKCEDHSLEILEHVK 235 (773)
Q Consensus 159 ~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (773)
.+...... ++.... +.....+.. ..+.+. .....+.+....++ . ...+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~----~----------~~~~~--------- 196 (275)
T PF03105_consen 145 WNQSSQLSSSSNIFSSSSSASAGSSN---SSSASR--RSQRFSSESSKQSS----N----------SESDA--------- 196 (275)
T ss_pred cccchhhccccccccCccccccCCcc---cccccc--ccccchhhhhhccC----C----------CCccc---------
Confidence 00000000 000000 000000000 000000 00000000000000 0 00000
Q ss_pred ccCCCCCCccccccccCCCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccCCcccH
Q 004104 236 INNTLETPRSTLKGVFKDSKDDELRFRKEELRKVEGQLRVVFIEFYQKLRLLKNYSFMNLAAFSKIMKKYDKITSTRASR 315 (773)
Q Consensus 236 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Lk~a~~e~Y~~L~~Lk~y~~LN~tgF~KIlKK~DK~~~~~~~~ 315 (773)
+.....+.......... .+...+.+++.+|+++|.|+|++|++|++|+.||+|||+||||||||+++++.+.
T Consensus 197 -------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~e~y~~l~~Lk~f~~LN~taf~KIlKK~DK~~~~~~~~ 268 (275)
T PF03105_consen 197 -------ESDNNRGDRSSDKPFLS-SSQKSLKKARKQLKKAFIELYRELELLKSFVELNRTAFRKILKKYDKVTGTSLSD 268 (275)
T ss_pred -------ccccccccccccccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 00000000000000011 3445678889999999999999999999999999999999999999999999999
Q ss_pred HHHHHc
Q 004104 316 SYMKIV 321 (773)
Q Consensus 316 ~y~~~v 321 (773)
.||+.|
T Consensus 269 ~y~~~v 274 (275)
T PF03105_consen 269 DYMEEV 274 (275)
T ss_pred hhhhcc
Confidence 999864
No 5
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.2e-30 Score=269.62 Aligned_cols=177 Identities=28% Similarity=0.439 Sum_probs=150.1
Q ss_pred CCcccchhcCCChhhHHhcCChhhHHHHHHHHHhhhccCCCCCchhhhhhhhhhhhccccCccccccccCCCCCcccccc
Q 004104 1 MKFGKEFKKQKVPEWIDAYMDYSGLKQILREIMLHKLSRQPPTPLRAIKQKLKLHRTFSGLHAKSRDFVSQGDIEDQVID 80 (773)
Q Consensus 1 MKFgk~l~~~~vPEW~~~YidYk~LKk~Ik~i~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~e~~~i~ 80 (773)
|||||+|+...+|||+++||||+.|||.||+....... +
T Consensus 1 MkFGk~L~~~~l~ew~~~yinYk~LKK~lK~~~~~~~~---------------------------------~-------- 39 (310)
T KOG1161|consen 1 MKFGKYLKEELLPEWKDKYINYKELKKLLKQYSIQTAD---------------------------------S-------- 39 (310)
T ss_pred CchhHHHHHhhhhhHhhhhcCHHHHHHHHHHhcccccc---------------------------------C--------
Confidence 99999999999999999999999999999997642110 0
Q ss_pred ccccCCCCCCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 004104 81 VEALPRDGSGHFYRTNFLRQSEEGGEIEEMFFEKLDQELNKVNKFYKDKVEAVMSEAAELNKQMDALIALRIKVDTKNAS 160 (773)
Q Consensus 81 v~~~~~~~~~~~y~t~~l~~~~~~~~~e~~Ff~~Ld~ELeKVn~FY~~Ke~E~~~r~~~L~kQl~~l~~~~~~~~~~~~~ 160 (773)
+. + ...|..|++.||+||||||.||.+||+|+..|++.|++|.++ ..
T Consensus 40 -------~~-------------~-~~~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~--~~---------- 86 (310)
T KOG1161|consen 40 -------SP-------------D-SRDESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA--LS---------- 86 (310)
T ss_pred -------Cc-------------c-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cc----------
Confidence 00 0 125889999999999999999999999999999999999865 00
Q ss_pred CCCCCCCCcccccccccCCCcccccccCCCCCcccCCCCCCCCcccccccCCCCCccccccccccchhhhHhhhhccCCC
Q 004104 161 PDNATAVPLRTSTRTLASDCTDLTIGVDTSNNYQEGELTGGPEVSEVTTANCSSDCKEEENKCEDHSLEILEHVKINNTL 240 (773)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (773)
.+ +.. .
T Consensus 87 -----------------------------------~~-~~~-----------~--------------------------- 92 (310)
T KOG1161|consen 87 -----------------------------------LE-PPS-----------A--------------------------- 92 (310)
T ss_pred -----------------------------------cC-Ccc-----------h---------------------------
Confidence 00 000 0
Q ss_pred CCCccccccccCCCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccCCcccHHHHHH
Q 004104 241 ETPRSTLKGVFKDSKDDELRFRKEELRKVEGQLRVVFIEFYQKLRLLKNYSFMNLAAFSKIMKKYDKITSTRASRSYMKI 320 (773)
Q Consensus 241 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Lk~a~~e~Y~~L~~Lk~y~~LN~tgF~KIlKK~DK~~~~~~~~~y~~~ 320 (773)
.+ -..|++++.++-.++..|.+|++||+|||+||||||||.++...+..|..+
T Consensus 93 ----------------~~-----------~~~lr~~l~~~~~em~~L~~fs~LN~tGf~KILKK~DKrtg~~l~~~f~~~ 145 (310)
T KOG1161|consen 93 ----------------EE-----------MKELREELVDFHGEMVLLENFSRLNYTGFAKILKKHDKRTGYRLRPYFQVR 145 (310)
T ss_pred ----------------hH-----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccccccccHHHHH
Confidence 00 148999999999999999999999999999999999999998889999999
Q ss_pred chhcCCCChhhHHHHHHHHHHHHHHHhcCCCH
Q 004104 321 VDNSYLGSSDDVTSLLEKVETTFISHFSNSNR 352 (773)
Q Consensus 321 v~~~~f~~~~~l~~l~~~ve~ly~~~f~~gd~ 352 (773)
|..+||++.+.+++|+.+++.+|...++.++.
T Consensus 146 l~~~Pf~~~e~~~~Lv~e~~~l~~~l~~~~~~ 177 (310)
T KOG1161|consen 146 LLHQPFFTTEQLFRLVYEISILLDLLRPSNRN 177 (310)
T ss_pred HHhCCCchhhhHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999987764
No 6
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.1e-22 Score=216.41 Aligned_cols=168 Identities=28% Similarity=0.347 Sum_probs=138.5
Q ss_pred CCcccchhcCCChhhHHhcCChhhHHHHHHHHHhhhccCCCCCchhhhhhhhhhhhccccCccccccccCCCCCcccccc
Q 004104 1 MKFGKEFKKQKVPEWIDAYMDYSGLKQILREIMLHKLSRQPPTPLRAIKQKLKLHRTFSGLHAKSRDFVSQGDIEDQVID 80 (773)
Q Consensus 1 MKFgk~l~~~~vPEW~~~YidYk~LKk~Ik~i~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~e~~~i~ 80 (773)
|+||+.|+++.+|+|+..||||..|||.+|+-.. ++ .|+
T Consensus 1 M~Fg~~L~~~ly~p~k~~YinYe~LK~~lK~~~~-----~~-----------------------------~w~------- 39 (509)
T COG5036 1 MRFGKKLKNNLYPPYKYSYINYENLKKLLKESEE-----EG-----------------------------SWS------- 39 (509)
T ss_pred CchhHHHHhccCcccccccCCHHHHHHHHhhccc-----cC-----------------------------CCc-------
Confidence 9999999999999999999999999999998221 00 121
Q ss_pred ccccCCCCCCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 004104 81 VEALPRDGSGHFYRTNFLRQSEEGGEIEEMFFEKLDQELNKVNKFYKDKVEAVMSEAAELNKQMDALIALRIKVDTKNAS 160 (773)
Q Consensus 81 v~~~~~~~~~~~y~t~~l~~~~~~~~~e~~Ff~~Ld~ELeKVn~FY~~Ke~E~~~r~~~L~kQl~~l~~~~~~~~~~~~~ 160 (773)
++.|..|.+.||+||+||..|...|.+|+.+|+..|++|..+.+...
T Consensus 40 ------------------------e~dEsdFVe~Ld~eLeKVY~F~~~k~~ev~erl~~leeq~~~~i~~~--------- 86 (509)
T COG5036 40 ------------------------ESDESDFVEELDKELEKVYGFQLSKYSEVMERLRTLEEQTDEAIQEL--------- 86 (509)
T ss_pred ------------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhcc---------
Confidence 35688999999999999999999999999999999999998443210
Q ss_pred CCCCCCCCcccccccccCCCcccccccCCCCCcccCCCCCCCCcccccccCCCCCccccccccccchhhhHhhhhccCCC
Q 004104 161 PDNATAVPLRTSTRTLASDCTDLTIGVDTSNNYQEGELTGGPEVSEVTTANCSSDCKEEENKCEDHSLEILEHVKINNTL 240 (773)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (773)
|++ .
T Consensus 87 ---------------------------------------ds~---~---------------------------------- 90 (509)
T COG5036 87 ---------------------------------------DSD---N---------------------------------- 90 (509)
T ss_pred ---------------------------------------cCC---c----------------------------------
Confidence 000 0
Q ss_pred CCCccccccccCCCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccCCcccHHHHHH
Q 004104 241 ETPRSTLKGVFKDSKDDELRFRKEELRKVEGQLRVVFIEFYQKLRLLKNYSFMNLAAFSKIMKKYDKITSTRASRSYMKI 320 (773)
Q Consensus 241 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Lk~a~~e~Y~~L~~Lk~y~~LN~tgF~KIlKK~DK~~~~~~~~~y~~~ 320 (773)
.. ..| .|-....+.|.+|..||+|||.||+|||||.++..+++.|..+
T Consensus 91 ------~~----------------------~~L----eE~L~~v~~l~kF~RLN~tGF~KIvKKHDK~~~y~lkpvfqvr 138 (509)
T COG5036 91 ------FP----------------------KIL----EEELDTVHDLAKFSRLNFTGFKKIVKKHDKHTGYSLKPVFQVR 138 (509)
T ss_pred ------ch----------------------hHH----HHHHHHHHHHHhhhhhhhHHHHHHHHhhcCCCCceechhHHHH
Confidence 00 012 2223388899999999999999999999999999999999999
Q ss_pred chhcCCCChhhHHHHHHHHHHHHHHHhcCCC
Q 004104 321 VDNSYLGSSDDVTSLLEKVETTFISHFSNSN 351 (773)
Q Consensus 321 v~~~~f~~~~~l~~l~~~ve~ly~~~f~~gd 351 (773)
++..||+ +++.+.|+.++..+|.-..++++
T Consensus 139 Lk~~p~~-se~yd~Ll~kis~LY~~lR~~~~ 168 (509)
T COG5036 139 LKAKPFF-SEQYDPLLYKISSLYNILRSSLS 168 (509)
T ss_pred hccCCcc-hhhhcHHHHHHHHHHHHHHhcCC
Confidence 9998985 58999999999999999998887
No 7
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=99.82 E-value=2.1e-19 Score=188.19 Aligned_cols=55 Identities=35% Similarity=0.490 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccCCcccHHHHHHc
Q 004104 267 RKVEGQLRVVFIEFYQKLRLLKNYSFMNLAAFSKIMKKYDKITSTRASRSYMKIV 321 (773)
Q Consensus 267 ~~a~~~Lk~a~~e~Y~~L~~Lk~y~~LN~tgF~KIlKK~DK~~~~~~~~~y~~~v 321 (773)
.+.+..|+++++++|..|+.|++|++||+|||+||+|||||.+++++...||++.
T Consensus 237 ~q~R~~lkk~ii~~y~~l~~lksf~eLN~tGf~Ki~KK~DK~l~~~~~~~~~s~~ 291 (296)
T COG5408 237 YQKRSLLKKRIIELYIQLHQLKSFIELNYTGFSKITKKYDKTLHQNLRHEYMSRS 291 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 3457899999999999999999999999999999999999999999999999864
No 8
>COG3872 Predicted metal-dependent enzyme [General function prediction only]
Probab=64.97 E-value=39 Score=35.89 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=47.9
Q ss_pred HHHHHhcCCCcceEeeecCCCcchhHHHHHHHHHHHHHHHHHHHHhhccccCccccchhcccchhhHHHHHHHHHHHhcc
Q 004104 431 IYFWRRYRVNYPFILGFKQGTVLSYREVFLLSTGLAVLALSSFLANLHLDMGSRTEHYRKLTELVPLFSITIVIVIIFCP 510 (773)
Q Consensus 431 ~~iw~~~~INy~~IFe~~~~~~l~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~Pl~l~~~~l~~l~~P 510 (773)
--+++.+|-.|+.|+....+-+++...+=.-+. .+|+ --+..+-+.+++.++++++.|
T Consensus 171 kRVFQYHGAEHk~I~~YE~~leLTpenvqk~Sr-----------------lHpR-----CGtsFl~~~~iV~i~v~slv~ 228 (318)
T COG3872 171 KRVFQYHGAEHKVINCYENGLELTPENVQKQSR-----------------LHPR-----CGTSFLLFTMIVGIFVYSLVP 228 (318)
T ss_pred HHHHHhcCccceeEeeeccCCcCChhHhhhhcc-----------------cccc-----cCchhhHHHHHHHHHHHHhcc
Confidence 358999999999999998887777643321111 1111 001122234455667778888
Q ss_pred hhhhhhhHHHHHHHHhhhhhcccc
Q 004104 511 FDIIYRSSRLFFIKSATHCFCAPL 534 (773)
Q Consensus 511 ~~i~~~~~R~~~l~~l~ril~~p~ 534 (773)
++ ..++|++.|+++-|+
T Consensus 229 ~~-------~lw~Rvv~RiiLlPv 245 (318)
T COG3872 229 FD-------NLWLRVVDRIILLPV 245 (318)
T ss_pred cc-------cHHHHHHHHHHHHHH
Confidence 87 234799999998885
No 9
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=53.82 E-value=2.9e+02 Score=29.04 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccCCc
Q 004104 265 ELRKVEGQLRVVFIEFYQKLRLLKNYSFMNLAAFSKIMKKYDKITSTR 312 (773)
Q Consensus 265 ~~~~a~~~Lk~a~~e~Y~~L~~Lk~y~~LN~tgF~KIlKK~DK~~~~~ 312 (773)
++++++.+|+.+-.+|+..-..++ .+|.++||+.=|.+.++
T Consensus 72 ~~~~I~ssL~eTtkdf~~~~~k~~-------~dF~~~Lq~~Lk~V~td 112 (230)
T PF03904_consen 72 NLKEIKSSLEETTKDFIDKTEKVH-------NDFQDILQDELKDVDTD 112 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhchH
Confidence 556666677777777776644444 48888898886665543
No 10
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=37.26 E-value=11 Score=40.31 Aligned_cols=16 Identities=25% Similarity=0.554 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhc
Q 004104 494 LVPLFSITIVIVIIFC 509 (773)
Q Consensus 494 ~~Pl~l~~~~l~~l~~ 509 (773)
+.-+.|+++++++++|
T Consensus 167 L~dL~WL~LFlaiLIW 182 (381)
T PF05297_consen 167 LVDLYWLLLFLAILIW 182 (381)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555566665
No 11
>PRK00068 hypothetical protein; Validated
Probab=35.80 E-value=2.1e+02 Score=36.29 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhh
Q 004104 596 WLRFLQCLRRLCE 608 (773)
Q Consensus 596 ~~R~~QClRry~d 608 (773)
-.|=+|-+|.||+
T Consensus 380 t~~QlQq~R~YY~ 392 (970)
T PRK00068 380 FFTQVQQIRNFYG 392 (970)
T ss_pred HHHHHHhccCcee
Confidence 3588899998875
No 12
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=34.81 E-value=31 Score=40.83 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=31.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhhcccCCcc--cHHHHHH
Q 004104 283 KLRLLKNYSFMNLAAFSKIMKKYDKITSTRA--SRSYMKI 320 (773)
Q Consensus 283 ~L~~Lk~y~~LN~tgF~KIlKK~DK~~~~~~--~~~y~~~ 320 (773)
.+..+++|..+|++++.|+.||.||..+.+. +..|...
T Consensus 10 ~l~~~~~~~~~~~~~ll~~p~~~~~~l~~~~e~~c~y~~~ 49 (586)
T KOG1281|consen 10 TLLQYRSLLVLNRTPLLLLPKKLDKLLHSSEEARCAYVIL 49 (586)
T ss_pred HHHHhhhhheeehhhhhhcchhhhhhcCCcHHHHHHHHHH
Confidence 8899999999999999999999999998764 3344443
No 13
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=34.31 E-value=1.2e+02 Score=26.76 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004104 113 EKLDQELNKVNKFYKDKVEAVMSEAAELNKQMDALIALR 151 (773)
Q Consensus 113 ~~Ld~ELeKVn~FY~~Ke~E~~~r~~~L~kQl~~l~~~~ 151 (773)
.++++|++|+. .|-+|+..|+..|+.|...+-+..
T Consensus 4 eKi~~eieK~k----~Kiae~Q~rlK~Le~qk~E~EN~E 38 (83)
T PF14193_consen 4 EKIRAEIEKTK----EKIAELQARLKELEAQKTEAENLE 38 (83)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999986 899999999999999998887764
No 14
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=33.94 E-value=70 Score=34.36 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004104 106 EIEEMFFEKLDQELNKVNKFYKDKVEAVMSEAAELNKQMDALIAL 150 (773)
Q Consensus 106 ~~e~~Ff~~Ld~ELeKVn~FY~~Ke~E~~~r~~~L~kQl~~l~~~ 150 (773)
+.+..++...+.=.+--+.|+..||..+.+|+..|+.||+.+.+-
T Consensus 13 ~~drrr~~~~~e~~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g 57 (291)
T KOG4466|consen 13 DKDRRRANEESEMSNLEKQFSELKEQMYKDKLAQLQAQLEELGQG 57 (291)
T ss_pred cHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456777777776666677899999999999999999999999754
No 15
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=31.26 E-value=5.8e+02 Score=27.06 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=27.5
Q ss_pred HHHHHHHHHHH--HHH-HHHhcCCCcceEeeecCCCcchhHH
Q 004104 419 YAILHMLMYAA--DIY-FWRRYRVNYPFILGFKQGTVLSYRE 457 (773)
Q Consensus 419 l~~l~~~l~~~--n~~-iw~~~~INy~~IFe~~~~~~l~~~~ 457 (773)
+++.++++.+. ++. +|+.+|=-|+-|..+..+.+++...
T Consensus 90 if~~Yi~~is~~~dI~Rvf~YHGAEHK~I~~yE~g~~Ltven 131 (236)
T PF07136_consen 90 IFLGYIWLISRMKDIKRVFQYHGAEHKVINCYEAGEELTVEN 131 (236)
T ss_pred HHHHHHHHHHhhHHHHHHHHHcchhhhhHHhhcCCCCCCHHH
Confidence 44455555554 343 8999999999998888877766543
No 16
>PF15038 Jiraiya: Jiraiya
Probab=29.84 E-value=2.1e+02 Score=28.94 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=30.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcccCccccchhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhcC
Q 004104 372 FLSGFFSGCSIALLIAVVLRIEARDLMDKKEGASYLVNIFPLYSLFAYAILHMLMYAADIYFWRRYR 438 (773)
Q Consensus 372 f~~G~f~G~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~l~~~n~~iw~~~~ 438 (773)
=..+||+|+.+.+....++.+..-.. .++ ..-.+..+.+.+++...+ .-|+|.|+|..
T Consensus 109 A~~~ff~sI~vfl~~l~ly~~l~f~~--~~~------~~~s~ilG~g~vfl~~~~-vh~l~~w~r~~ 166 (175)
T PF15038_consen 109 AVGLFFCSISVFLAALILYMLLQFHS--EPG------IATSIILGSGAVFLGAAM-VHNLYRWQRET 166 (175)
T ss_pred hhhhHHhhhhHHHHHHHHHHHHHHHH--HHH------HHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 35678888877665444333211100 011 111234555555554444 89999999864
No 17
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=28.17 E-value=95 Score=25.95 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=25.9
Q ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHhhhhhccc
Q 004104 500 ITIVIVIIFCPFDIIYRSSRLFFIKSATHCFCAP 533 (773)
Q Consensus 500 ~~~~l~~l~~P~~i~~~~~R~~~l~~l~ril~~p 533 (773)
++++.+++++|.....+++..+..+++.+.+.+|
T Consensus 9 ii~l~AlI~~pLGyl~~~~~~r~~~~lr~~l~~P 42 (62)
T PF11120_consen 9 IIILCALIFFPLGYLARRWLPRIRRTLRRRLFPP 42 (62)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHhcCc
Confidence 4445566788888777777777788888888888
No 18
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.39 E-value=2.5e+02 Score=25.78 Aligned_cols=18 Identities=11% Similarity=0.401 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004104 419 YAILHMLMYAADIYFWRR 436 (773)
Q Consensus 419 l~~l~~~l~~~n~~iw~~ 436 (773)
++++.+..=+.|+|.|-.
T Consensus 80 ~lllGv~~G~~n~w~wi~ 97 (100)
T TIGR02230 80 MLIVGVVIGCLNAWHWVS 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444445567777743
No 19
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=25.53 E-value=2e+02 Score=27.16 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=42.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhcCCc----chhhHHHHHHHHHHHHHHHH----HhhccCCchhHHHHHH----HHHHhh
Q 004104 587 YFIVAIVPFWLRFLQCLRRLCEEKDA----VHGWNGLKYLLIIIAVLIRT----AFELKKGTTWFVLALA----SSAVAV 654 (773)
Q Consensus 587 ~~i~~~lP~~~R~~QClRry~dt~~~----~hl~Na~KY~s~~~~~~~~~----~~~~~~~~~w~~~~~~----~~~i~s 654 (773)
.++++-+|.++ -||+.++.+. ......+|+.++.+++.-.. .++. +-..|..++.. ..+..|
T Consensus 33 ~y~laPiP~~i-----~~~~~~~~~~~~~~~~~~d~~~FlT~~~vvSg~aLP~VL~H~-~~I~~~A~~l~l~g~~ii~~t 106 (120)
T PF04133_consen 33 FYVLAPIPNLI-----ARRYSSDDDFSSDSGSCQDFGKFLTGFLVVSGFALPIVLAHA-GIIQWGACGLSLAGGVIIYAT 106 (120)
T ss_pred HHHHHhhhHHH-----HCCCCCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhHHHHHH
Confidence 45677788877 4555544322 23889999999876543211 1221 11234333322 224568
Q ss_pred HHHHHHHhhhhcc
Q 004104 655 AMSTYWDIVMDWG 667 (773)
Q Consensus 655 ~Ys~~WDv~mDWg 667 (773)
++.|.|-...||.
T Consensus 107 i~~f~~~f~~~dd 119 (120)
T PF04133_consen 107 IIGFFWFFGEEDD 119 (120)
T ss_pred HHHHHhhccCcCC
Confidence 8888887777663
No 20
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=24.24 E-value=6.1e+02 Score=28.39 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=12.3
Q ss_pred HHHHHHhhhcccCCcccHHHHHHchh
Q 004104 298 FSKIMKKYDKITSTRASRSYMKIVDN 323 (773)
Q Consensus 298 F~KIlKK~DK~~~~~~~~~y~~~v~~ 323 (773)
+..+-++|. -|......+++.+..
T Consensus 136 ~~~~~~q~~--~g~~d~~~l~~~v~~ 159 (348)
T PF08733_consen 136 TKVLEEQYY--NGYQDAIELQDLVNN 159 (348)
T ss_pred HHHHHHHHH--hCccCHHHHHHHHhC
Confidence 344445555 445555566666433
No 21
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=22.88 E-value=1.1e+02 Score=26.45 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004104 121 KVNKFYKDKVEAVMSEAAELNKQM 144 (773)
Q Consensus 121 KVn~FY~~Ke~E~~~r~~~L~kQl 144 (773)
+-..+|++|..|+..|++.|++++
T Consensus 47 ~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 47 PTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 347789999999999999999986
No 22
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=22.27 E-value=3e+02 Score=25.24 Aligned_cols=38 Identities=32% Similarity=0.525 Sum_probs=21.3
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004104 107 IEEMFFEKLD-QELNKVNKFYKDKVEAVMSEAAELNKQM 144 (773)
Q Consensus 107 ~e~~Ff~~Ld-~ELeKVn~FY~~Ke~E~~~r~~~L~kQl 144 (773)
.|..||...+ ++|+|...=..+..+.-.++++.|++++
T Consensus 61 ~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 61 QEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666666666 4466665554444444555555555554
No 23
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=20.51 E-value=1.3e+03 Score=26.79 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=8.8
Q ss_pred hhhHHHHHHHHH
Q 004104 373 LSGFFSGCSIAL 384 (773)
Q Consensus 373 ~~G~f~G~~~~l 384 (773)
..|+|+|+.+..
T Consensus 239 ~~Glf~Gil~lv 250 (441)
T PF03189_consen 239 SKGLFLGILVLV 250 (441)
T ss_pred chhHHHHHHHHH
Confidence 479999987543
Done!