Query 004104
Match_columns 773
No_of_seqs 308 out of 994
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:24:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hkr_A Calcium release-activat 40.4 1.3E+02 0.0046 29.6 9.5 18 371-388 30-47 (214)
2 2akf_A Coronin-1A; coiled coil 32.1 1.1E+02 0.0036 20.7 5.0 28 114-145 3-30 (32)
3 2l2r_A Antimicrobial peptide e 29.0 17 0.00058 25.4 0.8 10 600-609 9-18 (37)
4 2l5g_B Putative uncharacterize 21.9 1.5E+02 0.005 21.8 4.6 28 110-141 9-36 (42)
5 2xus_A Breast cancer metastasi 16.5 2.8E+02 0.0094 21.1 5.3 31 119-149 15-46 (49)
6 2p2u_A HOST-nuclease inhibitor 15.6 2.6E+02 0.009 26.5 6.5 44 108-151 32-75 (171)
7 3vem_A Helicase protein MOM1; 13.1 5.3E+02 0.018 23.0 7.1 46 105-150 56-101 (115)
8 3rhw_A Avermectin-sensitive gl 11.3 4.2E+02 0.014 27.7 7.2 28 414-441 315-342 (347)
9 3t98_B Nucleoporin NUP58/NUP45 11.1 3E+02 0.01 23.6 4.8 28 123-150 7-34 (93)
10 4fla_A Regulation of nuclear P 10.9 6.2E+02 0.021 23.5 7.4 51 105-155 81-141 (152)
No 1
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=40.45 E-value=1.3e+02 Score=29.58 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 004104 371 TFLSGFFSGCSIALLIAV 388 (773)
Q Consensus 371 ~f~~G~f~G~~~~l~i~~ 388 (773)
....+++.|++++.++-+
T Consensus 30 S~lSALLaGFAMVAmVE~ 47 (214)
T 4hkr_A 30 SKTSALLSGFAMVAMVEV 47 (214)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccceeeEEEE
Confidence 346789999988765543
No 2
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=32.08 E-value=1.1e+02 Score=20.66 Aligned_cols=28 Identities=11% Similarity=0.382 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004104 114 KLDQELNKVNKFYKDKVEAVMSEAAELNKQMD 145 (773)
Q Consensus 114 ~Ld~ELeKVn~FY~~Ke~E~~~r~~~L~kQl~ 145 (773)
+|++|+.|.|.-. .|+.+|++.|+.-++
T Consensus 3 rlee~~r~l~~iv----q~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIV----QKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 6888888887654 456677777776554
No 3
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=29.01 E-value=17 Score=25.37 Aligned_cols=10 Identities=50% Similarity=0.856 Sum_probs=8.6
Q ss_pred HHHHHHhhhc
Q 004104 600 LQCLRRLCEE 609 (773)
Q Consensus 600 ~QClRry~dt 609 (773)
.||+|||.|.
T Consensus 9 rqC~Rr~ede 18 (37)
T 2l2r_A 9 SQCMRRHEDE 18 (37)
T ss_dssp HHHHHHTSSC
T ss_pred HHHHHhccCC
Confidence 4999999885
No 4
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.86 E-value=1.5e+02 Score=21.81 Aligned_cols=28 Identities=14% Similarity=0.405 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004104 110 MFFEKLDQELNKVNKFYKDKVEAVMSEAAELN 141 (773)
Q Consensus 110 ~Ff~~Ld~ELeKVn~FY~~Ke~E~~~r~~~L~ 141 (773)
+=..+.|+|++|+. +|-+|+..|...|+
T Consensus 9 qkI~kVdrEI~Kte----~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 9 QNMDRVDREITMVE----QQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34568889998875 45555555554444
No 5
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=16.50 E-value=2.8e+02 Score=21.10 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=23.9
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004104 119 LNKVN-KFYKDKVEAVMSEAAELNKQMDALIA 149 (773)
Q Consensus 119 LeKVn-~FY~~Ke~E~~~r~~~L~kQl~~l~~ 149 (773)
|..+. .|-.-||.=+.+|+..|++|++.+.+
T Consensus 15 l~~LEkqF~~LkEqlY~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 15 MLDLEKQFSELKEKLFRERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333 78888899999999999999988753
No 6
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=15.56 E-value=2.6e+02 Score=26.54 Aligned_cols=44 Identities=9% Similarity=0.191 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004104 108 EEMFFEKLDQELNKVNKFYKDKVEAVMSEAAELNKQMDALIALR 151 (773)
Q Consensus 108 e~~Ff~~Ld~ELeKVn~FY~~Ke~E~~~r~~~L~kQl~~l~~~~ 151 (773)
...=-..+++|+++|...|....+.+..+.+.|+..+.+++...
T Consensus 32 ~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~ 75 (171)
T 2p2u_A 32 VGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATLN 75 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455678999999999999999999999999999999999864
No 7
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=13.14 E-value=5.3e+02 Score=23.01 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=37.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004104 105 GEIEEMFFEKLDQELNKVNKFYKDKVEAVMSEAAELNKQMDALIAL 150 (773)
Q Consensus 105 ~~~e~~Ff~~Ld~ELeKVn~FY~~Ke~E~~~r~~~L~kQl~~l~~~ 150 (773)
++...+--..+++|+++|..=|..|-.|+......-.+.++...+.
T Consensus 56 E~kklqLkse~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~~k 101 (115)
T 3vem_A 56 EEKKSILKAELERKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDKNL 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788999999999999999888888888888888777554
No 8
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=11.30 E-value=4.2e+02 Score=27.68 Aligned_cols=28 Identities=21% Similarity=0.607 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 004104 414 YSLFAYAILHMLMYAADIYFWRRYRVNY 441 (773)
Q Consensus 414 ~~~~~l~~l~~~l~~~n~~iw~~~~INy 441 (773)
.+..++.++-..+...|+..|++.+-+.
T Consensus 315 ~~~~~~~~~p~~~~i~n~~~~~~~~~~~ 342 (347)
T 3rhw_A 315 VDLISRALFPVLFFVFNILYWSRFGHHH 342 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3445555666777889999999987654
No 9
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=11.11 E-value=3e+02 Score=23.61 Aligned_cols=28 Identities=11% Similarity=0.251 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004104 123 NKFYKDKVEAVMSEAAELNKQMDALIAL 150 (773)
Q Consensus 123 n~FY~~Ke~E~~~r~~~L~kQl~~l~~~ 150 (773)
+.||.++..++..|+...+.|++.+..+
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~ 34 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENH 34 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888765
No 10
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=10.92 E-value=6.2e+02 Score=23.54 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=38.7
Q ss_pred cchHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004104 105 GEIEEMFFEKLDQELN----------KVNKFYKDKVEAVMSEAAELNKQMDALIALRIKVD 155 (773)
Q Consensus 105 ~~~e~~Ff~~Ld~ELe----------KVn~FY~~Ke~E~~~r~~~L~kQl~~l~~~~~~~~ 155 (773)
...-.+|..+|++|++ .-..||++..+|...++++.+..++.+..++..++
T Consensus 81 ~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~ 141 (152)
T 4fla_A 81 CLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELK 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777754 46778888888889999999988888888875554
Done!