Query 004104
Match_columns 773
No_of_seqs 308 out of 994
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 14:24:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004104.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004104hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2q66a1 a.160.1.1 (A:202-351) 8.0 82 0.006 27.4 2.3 16 373-388 26-41 (150)
2 d1khba1 c.91.1.1 (A:260-622) C 7.6 1.5E+02 0.011 29.3 4.3 34 113-146 324-362 (363)
3 d1wfda_ a.7.14.1 (A:) Hypothet 7.1 2.3E+02 0.017 21.9 4.6 26 122-147 57-82 (93)
4 d1q79a1 a.160.1.1 (A:215-364) 7.1 89 0.0065 27.1 2.0 16 373-388 26-41 (150)
5 d2nsza1 a.118.1.14 (A:322-450) 7.0 58 0.0042 27.3 0.7 31 333-363 4-34 (129)
6 d2btoa2 d.79.2.1 (A:253-432) T 4.6 2.6E+02 0.019 24.1 3.8 22 298-319 131-153 (180)
7 d1tubb2 d.79.2.1 (B:246-437) T 4.3 2.5E+02 0.018 24.4 3.4 28 297-324 134-163 (184)
8 d1tuba2 d.79.2.1 (A:246-440) T 3.7 2.6E+02 0.019 24.4 3.1 29 298-326 143-173 (195)
9 d2e74h1 f.23.27.1 (H:3-29) Pet 3.7 4.4E+02 0.032 15.4 3.2 17 422-438 10-26 (27)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 3.7 6.3E+02 0.046 20.0 5.5 23 12-34 24-46 (133)
No 1
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.95 E-value=82 Score=27.36 Aligned_cols=16 Identities=38% Similarity=0.600 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHH
Q 004104 373 LSGFFSGCSIALLIAV 388 (773)
Q Consensus 373 ~~G~f~G~~~~l~i~~ 388 (773)
..|++.|+.++++++-
T Consensus 26 ~~GylGGI~waILvAr 41 (150)
T d2q66a1 26 IFGFPGGVAWAMLVAR 41 (150)
T ss_dssp GGTSCCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHH
Confidence 5899999998776653
No 2
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.60 E-value=1.5e+02 Score=29.29 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 004104 113 EKLDQELNKVNKFYKDKVE-----AVMSEAAELNKQMDA 146 (773)
Q Consensus 113 ~~Ld~ELeKVn~FY~~Ke~-----E~~~r~~~L~kQl~~ 146 (773)
....+|++.+.++|.+|.. |+.++++.|++.|..
T Consensus 324 ~~w~~E~~~i~~~f~~~~g~~LP~el~~eL~~Lk~RL~~ 362 (363)
T d1khba1 324 EFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRISQ 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 4577899999999977653 777777777766653
No 3
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.14 E-value=2.3e+02 Score=21.93 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004104 122 VNKFYKDKVEAVMSEAAELNKQMDAL 147 (773)
Q Consensus 122 Vn~FY~~Ke~E~~~r~~~L~kQl~~l 147 (773)
...-++.|..|+..|++.|.+.+..-
T Consensus 57 ~k~~l~~k~~eYl~RAE~LK~~l~~~ 82 (93)
T d1wfda_ 57 KRCVLRTKISGYMDRAENIKKYLDQE 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999998766444
No 4
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.05 E-value=89 Score=27.13 Aligned_cols=16 Identities=44% Similarity=0.758 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHH
Q 004104 373 LSGFFSGCSIALLIAV 388 (773)
Q Consensus 373 ~~G~f~G~~~~l~i~~ 388 (773)
..|++.|+..+++++-
T Consensus 26 ~~GflGGI~waILvAr 41 (150)
T d1q79a1 26 ILGFLGGVSWAMLVAR 41 (150)
T ss_dssp TTTSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHH
Confidence 5799999998776553
No 5
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.01 E-value=58 Score=27.35 Aligned_cols=31 Identities=6% Similarity=0.180 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHhhhcCCCC
Q 004104 333 TSLLEKVETTFISHFSNSNRKDGMKSLRPKG 363 (773)
Q Consensus 333 ~~l~~~ve~ly~~~f~~gd~~~a~~~Lr~~~ 363 (773)
+.+.++++.+...+|..||.++|...++.-.
T Consensus 4 ~~l~kk~~~ll~EY~~~~D~~Ea~~~l~eL~ 34 (129)
T d2nsza1 4 NHLVKEIDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4678899999999999999999998887643
No 6
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}
Probab=4.56 E-value=2.6e+02 Score=24.12 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=15.0
Q ss_pred HHHHHHhhhcccCCcc-cHHHHH
Q 004104 298 FSKIMKKYDKITSTRA-SRSYMK 319 (773)
Q Consensus 298 F~KIlKK~DK~~~~~~-~~~y~~ 319 (773)
|.+|++||||...... -.+|.+
T Consensus 131 f~~~~~~F~~m~~rkAflh~Y~~ 153 (180)
T d2btoa2 131 LDRICHNFDKLWQRKAFANWYLN 153 (180)
T ss_dssp HHHHHHHHHHHHTTTTTHHHHHT
T ss_pred HHHHHHHHHHHHhcChhHHHhcC
Confidence 6678889998876543 456654
No 7
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=4.31 E-value=2.5e+02 Score=24.40 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=19.6
Q ss_pred HHHHHHHhhhcccCCcc-cHHHHH-Hchhc
Q 004104 297 AFSKIMKKYDKITSTRA-SRSYMK-IVDNS 324 (773)
Q Consensus 297 gF~KIlKK~DK~~~~~~-~~~y~~-~v~~~ 324 (773)
-|.+|++||||...... -.+|.+ .++..
T Consensus 134 ~f~~~~~~fd~l~~kkAflh~Y~~egmee~ 163 (184)
T d1tubb2 134 LFKRISEQFTAMFRRKAFLHWYTGEGMDEM 163 (184)
T ss_dssp HHHTHHHHHHHTCCCCCCCHHHHTSSCCST
T ss_pred HHHHHHHHHHHHHhcChhHHhhccCCCcHH
Confidence 47788999999987643 567775 35443
No 8
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=3.74 E-value=2.6e+02 Score=24.44 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=18.1
Q ss_pred HHHHHHhhhcccCCcc-cHHHHHH-chhcCC
Q 004104 298 FSKIMKKYDKITSTRA-SRSYMKI-VDNSYL 326 (773)
Q Consensus 298 F~KIlKK~DK~~~~~~-~~~y~~~-v~~~~f 326 (773)
|.+|++||||...... -.+|.+. ++..-|
T Consensus 143 f~~i~~~Fdkl~~rkAflh~Y~~egmee~eF 173 (195)
T d1tuba2 143 WARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 173 (195)
T ss_dssp HHHHHHHHHHHTTTTCCTTTGGGGSCCSSSS
T ss_pred HHHHHHHHHHHHhhchHHHHhcccCCcHHHH
Confidence 6788999999876533 4556532 444333
No 9
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.72 E-value=4.4e+02 Score=15.41 Aligned_cols=17 Identities=18% Similarity=0.513 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhcC
Q 004104 422 LHMLMYAADIYFWRRYR 438 (773)
Q Consensus 422 l~~~l~~~n~~iw~~~~ 438 (773)
|-.+-|++.+-+|-+.|
T Consensus 10 lvvftwsiamvvwgrng 26 (27)
T d2e74h1 10 LVVFTWSIAMVVWGRNG 26 (27)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHhhheeeeEEEccCC
Confidence 34556777788888876
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=3.65 E-value=6.3e+02 Score=19.96 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=13.8
Q ss_pred ChhhHHhcCChhhHHHHHHHHHh
Q 004104 12 VPEWIDAYMDYSGLKQILREIML 34 (773)
Q Consensus 12 vPEW~~~YidYk~LKk~Ik~i~~ 34 (773)
+..|+..--+|..++..|+.+..
T Consensus 24 i~~l~~~~~e~~~~~~~L~~l~~ 46 (133)
T d1fxkc_ 24 MEAVRATISELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555555566666666666653
Done!