Your job contains 1 sequence.
>004105
MKLSTSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKE
VDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPS
KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFR
HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVL
SSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRM
LFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT
TFPMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMFPW
MQQRVEPSFLGNDHNQQYQAMLAAGMQSGDPVRQQFMQLQQPFQYLQQSGSQNPLQLKQQ
QHLLQQLNSQAEDRAQQQQQPQQHMYHDALQIRTDELLQRQQSNLPSPSFSKANFMDSST
EISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMS
LPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGD
SGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREE
LGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEFRSSRPSDESPLSY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004105
(773 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2152642 - symbol:ARF8 "auxin response factor 8... 2058 9.2e-277 2
TAIR|locus:2204237 - symbol:ARF6 "auxin response factor 6... 1855 2.1e-235 3
TAIR|locus:2202205 - symbol:ARF19 "auxin response factor ... 1358 4.0e-169 3
TAIR|locus:2035454 - symbol:MP "MONOPTEROS" species:3702 ... 1205 3.3e-145 2
TAIR|locus:2174013 - symbol:ARF2 "auxin response factor 2... 982 4.2e-115 2
TAIR|locus:2175098 - symbol:ARF4 "auxin response factor 4... 924 1.6e-111 2
TAIR|locus:2025991 - symbol:ARF1 "auxin response factor 1... 944 1.3e-109 2
TAIR|locus:2039124 - symbol:ARF11 "auxin response factor ... 885 1.0e-107 3
TAIR|locus:2076765 - symbol:ARF18 "auxin response factor ... 903 2.5e-104 2
TAIR|locus:2138096 - symbol:ARF9 "auxin response factor 9... 861 4.1e-102 2
TAIR|locus:2057609 - symbol:ETT "ETTIN" species:3702 "Ara... 837 7.2e-86 2
TAIR|locus:2026145 - symbol:ARF12 "auxin response factor ... 706 2.4e-85 2
TAIR|locus:2009298 - symbol:ARF21 "auxin response factor ... 709 9.3e-84 2
TAIR|locus:2036288 - symbol:ARF22 "auxin response factor ... 684 1.2e-83 2
TAIR|locus:2014731 - symbol:ARF14 "auxin response factor ... 689 2.8e-82 2
TAIR|locus:2206717 - symbol:ARF20 "auxin response factor ... 671 1.7e-80 2
TAIR|locus:2057517 - symbol:ARF10 "auxin response factor ... 524 3.9e-79 3
TAIR|locus:2126460 - symbol:ARF16 "auxin response factor ... 505 2.2e-77 3
TAIR|locus:2008991 - symbol:ARF13 "AUXIN RESPONSE FACTOR ... 479 1.6e-70 3
TAIR|locus:2029436 - symbol:ARF17 "auxin response factor ... 436 2.1e-51 2
TAIR|locus:2037169 - symbol:ARF23 "auxin response factor ... 409 1.7e-37 1
TAIR|locus:2079537 - symbol:NGA2 "NGATHA2" species:3702 "... 144 6.6e-07 1
TAIR|locus:2200950 - symbol:NGA3 "NGATHA3" species:3702 "... 144 2.3e-06 2
TAIR|locus:2090527 - symbol:IAA31 "indole-3-acetic acid i... 118 3.9e-06 1
TAIR|locus:2041404 - symbol:NGA1 "NGATHA1" species:3702 "... 137 4.4e-06 1
TAIR|locus:2085969 - symbol:EDF3 "ethylene response DNA b... 130 3.1e-05 1
TAIR|locus:2117007 - symbol:NGA4 "NGATHA4" species:3702 "... 129 4.1e-05 1
TAIR|locus:2205319 - symbol:RAV1 "related to ABI3/VP1 1" ... 128 5.6e-05 1
DICTYBASE|DDB_G0285837 - symbol:DDB_G0285837 "BRWD group ... 119 6.4e-05 3
TAIR|locus:2039165 - symbol:ABS2 "ABNORMAL SHOOT 2" speci... 124 6.6e-05 1
TAIR|locus:2012438 - symbol:RAV2 "related to ABI3/VP1 2" ... 124 0.00016 1
TAIR|locus:2164215 - symbol:DPA4 "DEVELOPMENT-RELATED PcG... 122 0.00017 1
TAIR|locus:2031185 - symbol:TEM1 "TEMPRANILLO 1" species:... 123 0.00022 1
TAIR|locus:2080782 - symbol:AT3G11580 species:3702 "Arabi... 120 0.00025 1
TAIR|locus:2180557 - symbol:IAA28 "AT5G25890" species:370... 110 0.00044 2
TAIR|locus:2051154 - symbol:IAA13 "auxin-induced protein ... 111 0.00070 2
>TAIR|locus:2152642 [details] [associations]
symbol:ARF8 "auxin response factor 8" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;TAS]
[GO:0009733 "response to auxin stimulus" evidence=IMP] [GO:0009908
"flower development" evidence=IGI] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009886 "post-embryonic
morphogenesis" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009733 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009908 HOGENOM:HOG000241141
ProtClustDB:CLSN2686713 EMBL:AF042196 EMBL:AY669790 EMBL:AB024026
IPI:IPI00525703 IPI:IPI00846789 RefSeq:NP_001078672.1
RefSeq:NP_198518.1 UniGene:At.23446 ProteinModelPortal:Q9FGV1
SMR:Q9FGV1 IntAct:Q9FGV1 STRING:Q9FGV1 PaxDb:Q9FGV1 PRIDE:Q9FGV1
EnsemblPlants:AT5G37020.1 GeneID:833672 KEGG:ath:AT5G37020
GeneFarm:3372 TAIR:At5g37020 eggNOG:NOG292968 InParanoid:Q9FGV1
OMA:NDAYLPA PhylomeDB:Q9FGV1 Genevestigator:Q9FGV1
GermOnline:AT5G37020 Uniprot:Q9FGV1
Length = 811
Score = 2058 (729.5 bits), Expect = 9.2e-277, Sum P(2) = 9.2e-277
Identities = 388/457 (84%), Positives = 415/457 (90%)
Query: 1 MKLSTSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKE 60
MKLSTSGL QQGHEG+ KCLNSELWHACAGPLVSLP+ G+RVVYFPQGHSEQVAATTNKE
Sbjct: 1 MKLSTSGLGQQGHEGE-KCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKE 59
Query: 61 VDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPS 120
VD HIPNYP+LPPQLICQLHNVTMHADVETDEVYAQMTLQPL+PEEQK+TFVPIELGIPS
Sbjct: 60 VDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPS 119
Query: 121 KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFR 180
KQP+NYFCKTLTASDTSTHGGFSVPRRAAEKVFP LD++LQPPAQELIARDLHDVEWKFR
Sbjct: 120 KQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFR 179
Query: 181 HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVL 240
HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSV+FI NEKNQL LGIR A RP T++PSSVL
Sbjct: 180 HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVL 239
Query: 241 SSDSMHIGLLXXXXXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRM 300
SSDSMHIGLL TNSCFTVFF+PRAS SEFVI L+KY+KAVFHTR+SVGMRFRM
Sbjct: 240 SSDSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRM 299
Query: 301 LFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 360
LFETEESSVRRYMGTITGISDLD VRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLT
Sbjct: 300 LFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 359
Query: 361 TFPMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNWLRGGTGEQ-GLTTLNFQSLGMFP 419
TFPMYPSLFPLRLKRPWH TSS D R + SGL WLRGG GEQ GL LN+ S+G+FP
Sbjct: 360 TFPMYPSLFPLRLKRPWHAGTSSLPDGRGDLGSGLTWLRGGGGEQQGLLPLNYPSVGLFP 419
Query: 420 WMQQRVEPSFLGNDHNQQYQAMLAAGMQS---GDPVR 453
WMQQR++ S +G D+NQQYQAMLAAG+Q+ GDP+R
Sbjct: 420 WMQQRLDLSQMGTDNNQQYQAMLAAGLQNIGGGDPLR 456
Score = 626 (225.4 bits), Expect = 9.2e-277, Sum P(2) = 9.2e-277
Identities = 140/257 (54%), Positives = 169/257 (65%)
Query: 506 YHDALQIRTDELLQ-RQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLL 564
Y +A +++ L Q +QQS +PSPSF K++F DSS + + + SP G GNLL
Sbjct: 534 YLNAFKMQNGHLQQWQQQSEMPSPSFMKSDFTDSSNKFATTASPAS--------GDGNLL 585
Query: 565 NFSGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNS 624
NFS G S+L P+Q + P F +SLP +Y GK A+ N QN
Sbjct: 586 NFSITGQSVL----PEQLTTEGWSPKASNTFSEPLSLPQAYPGKSLALEPGN----PQNP 637
Query: 625 VVFGVHIDSSGLLLPTTVSSFTTSV-DPGVSSMPLGDSGFHNSMYGCMQDSS-ELLHNVG 682
+FGV DS GL LP+TV F +S D S M L DSGF NS+Y CMQD++ ELLH G
Sbjct: 638 SLFGVDPDS-GLFLPSTVPRFASSSGDAEASPMSLTDSGFQNSLYSCMQDTTHELLHGAG 696
Query: 683 QIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLV 742
QI+ T+ FVKVYKSGSVGRSLDISRFSSY+ELREELG+MF IEG EDPLRSGWQLV
Sbjct: 697 QINSSNQTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLV 756
Query: 743 FVDRENDVLLLGDDPWE 759
FVD+END+LLLGDDPWE
Sbjct: 757 FVDKENDILLLGDDPWE 773
>TAIR|locus:2204237 [details] [associations]
symbol:ARF6 "auxin response factor 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IMP] [GO:0009908 "flower development"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009886 "post-embryonic morphogenesis" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010051 "xylem and phloem
pattern formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733 GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC025295
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 HOGENOM:HOG000241141 EMBL:AF013467 EMBL:AY669788
EMBL:EU550049 EMBL:EU550050 EMBL:EU550051 EMBL:EU550052
EMBL:EU550053 EMBL:EU550054 EMBL:EU550055 EMBL:EU550056
EMBL:EU550057 EMBL:EU550058 EMBL:EU550059 EMBL:EU550060
EMBL:EU550061 EMBL:EU550062 EMBL:EU550063 EMBL:EU550064
EMBL:EU550065 EMBL:EU550066 EMBL:EU550067 EMBL:EU550068
EMBL:EU550069 EMBL:EU550070 EMBL:EU550071 EMBL:EU550072
IPI:IPI00533211 IPI:IPI00656643 PIR:F86427 RefSeq:NP_001031115.1
RefSeq:NP_174323.1 UniGene:At.21939 ProteinModelPortal:Q9ZTX8
SMR:Q9ZTX8 IntAct:Q9ZTX8 STRING:Q9ZTX8 PaxDb:Q9ZTX8 PRIDE:Q9ZTX8
EnsemblPlants:AT1G30330.2 GeneID:839913 KEGG:ath:AT1G30330
GeneFarm:3369 TAIR:At1g30330 eggNOG:NOG288258 InParanoid:Q9ZTX8
OMA:ANSHWRS PhylomeDB:Q9ZTX8 ProtClustDB:CLSN2686713
Genevestigator:Q9ZTX8 GermOnline:AT1G30330 Uniprot:Q9ZTX8
Length = 935
Score = 1855 (658.1 bits), Expect = 2.1e-235, Sum P(3) = 2.1e-235
Identities = 354/458 (77%), Positives = 392/458 (85%)
Query: 1 MKLSTSGLCQQGHE--GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTN 58
M+LS++G Q HE G+ + LNSELWHACAGPLVSLP VG+RVVYFPQGHSEQVAA+TN
Sbjct: 1 MRLSSAGFNPQPHEVTGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTN 60
Query: 59 KEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGI 118
KEVD+HIPNYP+L PQLICQLHNVTMHADVETDEVYAQMTLQPL+ +EQKD ++P ELG+
Sbjct: 61 KEVDAHIPNYPSLHPQLICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGV 120
Query: 119 PSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWK 178
PS+QPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFP LD+S QPPAQEL+ARDLHD EWK
Sbjct: 121 PSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWK 180
Query: 179 FRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSS 238
FRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN+KNQLLLGIRRA RP TVMPSS
Sbjct: 181 FRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSS 240
Query: 239 VLSSDSMHIGLLXXXXXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRF 298
VLSSDSMH+GLL TNS FT+F+NPRASPSEFVIPL KYVKAV+HTRVSVGMRF
Sbjct: 241 VLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRF 300
Query: 299 RMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEP 358
RMLFETEESSVRRYMGTITGI DLDP RW+NSHWRSVKVGWDESTAGERQPRVSLWEIEP
Sbjct: 301 RMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEP 360
Query: 359 LTTFPMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMF 418
LTTFPMYPS FPLRLKRPW P SF+ +++ G++ ++GL +LNFQ +G+
Sbjct: 361 LTTFPMYPSPFPLRLKRPWPPGLPSFHGLKEDDM-GMSMSSPLMWDRGLQSLNFQGMGVN 419
Query: 419 PWMQQRVEPSFLGNDHNQQYQAMLAAGMQS--G-DPVR 453
PWMQ R++ S L N YQAM AA +Q G DP +
Sbjct: 420 PWMQPRLDTSGLLGMQNDVYQAMAAAALQDMRGIDPAK 457
Score = 412 (150.1 bits), Expect = 2.1e-235, Sum P(3) = 2.1e-235
Identities = 99/210 (47%), Positives = 133/210 (63%)
Query: 567 SGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVV 626
SGAG + + Q LG + S V +++SLP G++ ++ E +D + ++
Sbjct: 666 SGAGNNNTQSVLEQ--LGQSHT-SNVPP--NAVSLPPFPGGRECSIEQEGSASDPHSHLL 720
Query: 627 FGVHIDSSGLLLPTTVSSFTT-SVDPGVSS-MPLGDSGFHNSMYG---------CMQDSS 675
FGV+IDSS LL+P +S+ + ++ G S+ +P S F+N G C+ D S
Sbjct: 721 FGVNIDSSSLLMPNGMSNLRSIGIEGGDSTTLPFTSSNFNNDFSGNLAMTTPSSCI-DES 779
Query: 676 ELLHNVGQIDQLTP-TRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDP 734
L + + P + TFVKVYKSGS GRSLDIS+FSSY+ELR EL +MFG+EG+ EDP
Sbjct: 780 GFLQSSENLGSENPQSNTFVKVYKSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDP 839
Query: 735 LRSGWQLVFVDRENDVLLLGDDPW-EFRSS 763
+RSGWQLVFVDRENDVLLLGDDPW EF SS
Sbjct: 840 VRSGWQLVFVDRENDVLLLGDDPWPEFVSS 869
Score = 54 (24.1 bits), Expect = 8.8e-195, Sum P(2) = 8.8e-195
Identities = 43/191 (22%), Positives = 74/191 (38%)
Query: 527 SPSFS-KANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQ-SLG 584
SP FS ++ + + +S Q L + L S L QQ QQ S
Sbjct: 468 SPGFSMQSPSLVQPQMLQQQLSQQQQQLSQQQQQQQQL---SQQQQQQLSQQQQQQLSQQ 524
Query: 585 SKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDS-SGLLLPTTVS 643
+ + SQ + + +P ++ + A N + Q V H S S + + +S
Sbjct: 525 QQQQLSQQQQQQAYLGVPETHQPQSQAQSQSNNHLSQQQQQVVDNHNPSASSAAVVSAMS 584
Query: 644 SFTTSVDPGVSSMPLGDSGFHNSMYGCMQDS-SELLHNVGQIDQLTPTRTFVKVYKSGSV 702
F ++ P S PL S+ C Q S S+ N G + ++P T + +
Sbjct: 585 QFGSASQPNTS--PLQSM---TSL--CHQQSFSDT--NGGN-NPISPLHTLLSNFSQDES 634
Query: 703 GRSLDISRFSS 713
+ L ++R +S
Sbjct: 635 SQLLHLTRTNS 645
Score = 43 (20.2 bits), Expect = 2.1e-235, Sum P(3) = 2.1e-235
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 536 MDSSTEISVSISPMQNMLGSLP-EGSGNLLNFSGA------GPSMLRQQFPQQSLGSKYE 588
M + +++ + +Q+M G P + + +LL F + PS+++ Q QQ L + +
Sbjct: 434 MQNDVYQAMAAAALQDMRGIDPAKAAASLLQFQNSPGFSMQSPSLVQPQMLQQQLSQQQQ 493
>TAIR|locus:2202205 [details] [associations]
symbol:ARF19 "auxin response factor 19" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0009733 "response to auxin stimulus"
evidence=RCA;IMP;NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0048366 "leaf
development" evidence=IGI] [GO:0048527 "lateral root development"
evidence=IGI;RCA] [GO:0009723 "response to ethylene stimulus"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0010311
"lateral root formation" evidence=IGI] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009741 "response to brassinosteroid stimulus"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0048765 "root hair cell
differentiation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0046983 "protein dimerization activity"
evidence=IDA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0009723 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0046983 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010311 GO:GO:0048366 HOGENOM:HOG000241141
EMBL:U53672 EMBL:AY008390 EMBL:AY669794 EMBL:AC069143 EMBL:AB493467
EMBL:AJ441312 IPI:IPI00534870 PIR:G86325 RefSeq:NP_173356.1
UniGene:At.10488 ProteinModelPortal:Q8RYC8 SMR:Q8RYC8 IntAct:Q8RYC8
STRING:Q8RYC8 EnsemblPlants:AT1G19220.1 GeneID:838505
KEGG:ath:AT1G19220 GeneFarm:3421 TAIR:At1g19220 eggNOG:NOG331338
InParanoid:Q8RYC8 OMA:WEIEPVI PhylomeDB:Q8RYC8
ProtClustDB:CLSN2914206 Genevestigator:Q8RYC8 GermOnline:AT1G19220
Uniprot:Q8RYC8
Length = 1086
Score = 1358 (483.1 bits), Expect = 4.0e-169, Sum P(3) = 4.0e-169
Identities = 268/460 (58%), Positives = 332/460 (72%)
Query: 1 MKLSTSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKE 60
MK ++G +EG+ K +NS+LWHACAGPLVSLP VG+ VVYFPQGHSEQVAA+ K+
Sbjct: 1 MKAPSNGFLPSSNEGEKKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQ 60
Query: 61 VDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIP- 119
D IPNYPNLP +LIC LH+VT+HAD ETDEVYAQMTLQP++ + ++ + ++G+
Sbjct: 61 TD-FIPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYD-REALLASDMGLKL 118
Query: 120 SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKF 179
++QPT +FCKTLTASDTSTHGGFSVPRRAAEK+FP LDFS+QPPAQE++A+DLHD W F
Sbjct: 119 NRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTF 178
Query: 180 RHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSV 239
RHI+RGQPKRHLLTTGWSVFVS KRL AGDSVLF+ +EK+QL+LGIRRA R + SSV
Sbjct: 179 RHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSV 238
Query: 240 LSSDSMHIGLLXXXXXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFR 299
+SSDSMHIG+L +S FT+FFNPRASPSEFV+PL KY KA++ +VS+GMRFR
Sbjct: 239 ISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALY-AQVSLGMRFR 297
Query: 300 MLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPL 359
M+FETE+ VRRYMGT+TGISDLDPVRW S WR+++VGWDESTAG+R RVS+WEIEP+
Sbjct: 298 MMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIEPV 357
Query: 360 TTFPMYPSLFPLRLKRPWHPSTSSFNDNR-D-ETA--SGLNWLRGGTGEQGLTTLNFQSL 415
T P Y + P RP +P D+ D E A + W+ G + + F L
Sbjct: 358 IT-PFY--ICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWMGEDFGMKDAQSSMFPGL 414
Query: 416 GMFPWMQQRVEPSFLGNDHNQQYQAM----LAAGMQSGDP 451
+ WM + G+ Q A+ L S DP
Sbjct: 415 SLVQWMSMQQNNPLSGSATPQLPSALSSFNLPNNFASNDP 454
Score = 280 (103.6 bits), Expect = 4.0e-169, Sum P(3) = 4.0e-169
Identities = 76/195 (38%), Positives = 110/195 (56%)
Query: 570 GPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNT--DSQNSVVF 627
GP +Q FP S G + Q ++++ P G AV ++ + D QN V
Sbjct: 844 GPVQQQQTFPLPSFGFDGD-CQSHHPRNNLAFP----GNLEAVTSDPLYSQKDFQNLVP- 897
Query: 628 GVHIDSSGLLLPTTVSSFTTSVDP-GVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQI-- 684
+ ++ + T +SS S G+ S+P G N + G + DS + N G +
Sbjct: 898 --NYGNTPRDIETELSSAAISSQSFGIPSIPF-KPGCSNEVGG-INDSG--IMNGGGLWP 951
Query: 685 DQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFV 744
+Q RT+ KV K GSVGRS+D++R+S Y+ELR +L +MFGIEG+ EDPL S W+LV+
Sbjct: 952 NQTQRMRTYTKVQKRGSVGRSIDVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYT 1011
Query: 745 DRENDVLLLGDDPWE 759
D END+LL+GDDPWE
Sbjct: 1012 DHENDILLVGDDPWE 1026
Score = 44 (20.5 bits), Expect = 4.0e-169, Sum P(3) = 4.0e-169
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 504 HMYHDALQIRTDELLQRQQSNLPSPS 529
H L +L +QQS+ PSPS
Sbjct: 618 HSLQQNLSQNPQQLQMQQQSSKPSPS 643
>TAIR|locus:2035454 [details] [associations]
symbol:MP "MONOPTEROS" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IEP]
[GO:0009725 "response to hormone stimulus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;TAS] [GO:0009733 "response to auxin
stimulus" evidence=IEP;RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0016020 "membrane" evidence=IDA] [GO:0009790 "embryo
development" evidence=IGI] [GO:0009908 "flower development"
evidence=IGI] [GO:0010305 "leaf vascular tissue pattern formation"
evidence=IGI] [GO:0048364 "root development" evidence=IGI]
[GO:0048507 "meristem development" evidence=IGI;RCA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0009741
"response to brassinosteroid stimulus" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0009886
"post-embryonic morphogenesis" evidence=RCA] [GO:0009887 "organ
morphogenesis" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=IMP;RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010090 "trichome morphogenesis" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0048527
"lateral root development" evidence=RCA] [GO:0048765 "root hair
cell differentiation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0009942 "longitudinal axis specification"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0016020 GO:GO:0003700 GO:GO:0006351
GO:GO:0048364 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0044212 GO:GO:0009908 GO:GO:0048507
EMBL:AC007797 KO:K14486 EMBL:AF037228 EMBL:AF037229 EMBL:AF334716
EMBL:BT002050 EMBL:BT008805 EMBL:AB199792 EMBL:U79557 EMBL:EF598523
EMBL:EF598524 EMBL:EF598525 EMBL:EF598526 EMBL:EF598527
EMBL:EF598528 EMBL:EF598529 EMBL:EF598530 EMBL:EF598531
EMBL:EF598532 EMBL:EF598533 EMBL:EF598534 EMBL:EF598535
EMBL:EF598536 EMBL:EF598537 EMBL:EF598538 EMBL:EF598539
EMBL:EF598540 EMBL:EF598541 EMBL:EF598542 EMBL:EF598543
EMBL:EF598544 EMBL:EF598545 EMBL:EF598546 IPI:IPI00538603
PIR:G86331 PIR:T51807 RefSeq:NP_173414.1 UniGene:At.10494
UniGene:At.41731 ProteinModelPortal:P93024 SMR:P93024 IntAct:P93024
STRING:P93024 PaxDb:P93024 PRIDE:P93024 EnsemblPlants:AT1G19850.1
GeneID:838573 KEGG:ath:AT1G19850 GeneFarm:3368 TAIR:At1g19850
eggNOG:NOG291711 InParanoid:P93024 OMA:ARYNKAT PhylomeDB:P93024
ProtClustDB:CLSN2682929 Genevestigator:P93024 GermOnline:AT1G19850
GO:GO:0010305 GO:GO:0009942 Uniprot:P93024
Length = 902
Score = 1205 (429.2 bits), Expect = 3.3e-145, Sum P(2) = 3.3e-145
Identities = 226/363 (62%), Positives = 279/363 (76%)
Query: 20 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQL 79
+NSELWHACAGPLV LP VG+ V YF QGHSEQVA +T + + +PNYPNLP QL+CQ+
Sbjct: 51 INSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQV 110
Query: 80 HNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGI--PSKQPTNYFCKTLTASDTS 137
HNVT+HAD ++DE+YAQM+LQP+ E +D F + G+ SK PT +FCKTLTASDTS
Sbjct: 111 HNVTLHADKDSDEIYAQMSLQPVHSE--RDVFPVPDFGMLRGSKHPTEFFCKTLTASDTS 168
Query: 138 THGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWS 197
THGGFSVPRRAAEK+FP LD+S QPP QEL+ RDLH+ W FRHI+RGQPKRHLLTTGWS
Sbjct: 169 THGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWS 228
Query: 198 VFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXX 257
+FV +KRL AGDSVLFI +EK+QL++G+RRA R T +PSSVLS+DSMHIG+L
Sbjct: 229 LFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHAT 288
Query: 258 XTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTIT 317
+ F +F+NPRA P+EFVIPL KY KA+ +++SVGMRF M+FETE+S RRYMGTI
Sbjct: 289 ANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYMGTIV 348
Query: 318 GISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPW 377
GISDLDP+RW S WR+++V WDE ++ RVS W+IE + ++PSL LKR
Sbjct: 349 GISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPSLTS-GLKRQL 407
Query: 378 HPS 380
HPS
Sbjct: 408 HPS 410
Score = 235 (87.8 bits), Expect = 3.3e-145, Sum P(2) = 3.3e-145
Identities = 84/260 (32%), Positives = 117/260 (45%)
Query: 512 IRTDELLQRQQSNLPSPSFS-KANFMDSSTEISVSISPMQN---MLGSLPEGSGNLLNFS 567
+ TDEL Q S+ S + S K F+ SS + S + P + + + N L F
Sbjct: 609 LETDELTS-QVSSFQSLAGSYKQPFILSSQDSSAVVLPDSTNSPLFHDVWDTQLNGLKFD 667
Query: 568 GAGPSMLRQQFPQQSLG-SKYEPSQVRDFVHSMSLPSSYNG-KDAAVGTE--NCNTDSQN 623
P M + + Q++ S S + D S ++ + KD C + N
Sbjct: 668 QFSPLMQQDLYASQNICMSNSTTSNILDPPLSNTVLDDFCAIKDTDFQNHPSGCLVGNNN 727
Query: 624 SVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNV-G 682
+ F + S T +SF S P G S D L N G
Sbjct: 728 TS-FAQDVQSQ-----ITSASFADSQAFSRQDFPDNSGGTGTSSSNVDFDDCSLRQNSKG 781
Query: 683 QIDQ--LTP-TRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGW 739
Q TP RT+ KV K+GSVGRS+D++ F Y EL+ + MFG+EG P SGW
Sbjct: 782 SSWQKIATPRVRTYTKVQKTGSVGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSGW 841
Query: 740 QLVFVDRENDVLLLGDDPWE 759
+LV+VD E+DVLL+GDDPWE
Sbjct: 842 KLVYVDYESDVLLVGDDPWE 861
Score = 52 (23.4 bits), Expect = 7.1e-126, Sum P(2) = 7.1e-126
Identities = 33/140 (23%), Positives = 50/140 (35%)
Query: 521 QQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQ 580
Q+ NL S S S ++ST S +Q+ L E + + + + Q +
Sbjct: 518 QEQNL-SQSMSAPAKPENSTLSGCSSGRVQHGLEQSMEQASQVTTSTVCNEEKVNQLLQK 576
Query: 581 QSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSGLLLPT 640
S + Q D H + P S D G TD S V + P
Sbjct: 577 PGASSPVQADQCLDITHQIYQPQS----DPINGFSFLETDELTSQVSSFQSLAGSYKQPF 632
Query: 641 TVSSFTTS--VDPGVSSMPL 658
+SS +S V P ++ PL
Sbjct: 633 ILSSQDSSAVVLPDSTNSPL 652
>TAIR|locus:2174013 [details] [associations]
symbol:ARF2 "auxin response factor 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP;TAS] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010047 "fruit dehiscence"
evidence=IMP] [GO:0010150 "leaf senescence" evidence=IMP]
[GO:0010227 "floral organ abscission" evidence=IMP] [GO:0008285
"negative regulation of cell proliferation" evidence=IMP]
[GO:0048481 "ovule development" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009737 "response to abscisic acid
stimulus" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0042744 "hydrogen peroxide catabolic process"
evidence=RCA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0009737 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045892 GO:GO:0008285 GO:GO:0009734 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 GO:GO:0010150 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009911 GO:GO:0010047
GO:GO:0010227 GO:GO:0048481 EMBL:AY669787 EMBL:AB016880
EMBL:AF336918 EMBL:AF378862 EMBL:BT000784 EMBL:BT001072
EMBL:AK221252 EMBL:AK221254 EMBL:AK221274 EMBL:AK221277
EMBL:AK221282 EMBL:AK221305 EMBL:U89771 EMBL:AJ441313 EMBL:AJ458328
IPI:IPI00518739 RefSeq:NP_201006.2 RefSeq:NP_851244.1
RefSeq:NP_974980.1 UniGene:At.21704 ProteinModelPortal:Q94JM3
SMR:Q94JM3 DIP:DIP-46014N IntAct:Q94JM3 STRING:Q94JM3 PaxDb:Q94JM3
PRIDE:Q94JM3 EnsemblPlants:AT5G62000.1 EnsemblPlants:AT5G62000.2
EnsemblPlants:AT5G62000.3 GeneID:836321 KEGG:ath:AT5G62000
GeneFarm:3364 TAIR:At5g62000 eggNOG:NOG255064 InParanoid:Q94JM3
OMA:HTESVEC PhylomeDB:Q94JM3 ProtClustDB:CLSN2680590
Genevestigator:Q94JM3 GermOnline:AT5G62000 Uniprot:Q94JM3
Length = 859
Score = 982 (350.7 bits), Expect = 4.2e-115, Sum P(2) = 4.2e-115
Identities = 201/420 (47%), Positives = 274/420 (65%)
Query: 20 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQL 79
L ELWHACAGPLV++P RV YFPQGH EQV A+TN+ + +P Y +LP +L+C++
Sbjct: 58 LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLY-DLPSKLLCRV 116
Query: 80 HNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTH 139
NV + A+ +TDEVYAQ+TL P + +++ L P + + FCKTLTASDTSTH
Sbjct: 117 INVDLKAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRFQVHSFCKTLTASDTSTH 176
Query: 140 GGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVF 199
GGFSV RR A++ P LD S QPP QEL+A+DLH EW+FRHIFRGQP+RHLL +GWSVF
Sbjct: 177 GGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVF 236
Query: 200 VSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXT 259
VS+KRLVAGD+ +F+ E +L +G+RRA+R +PSSV+SS SMH+G+L T
Sbjct: 237 VSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAIST 296
Query: 260 NSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGI 319
+ FTV++ PR SPSEF++P +Y+++V S+GMRF+M FE EE+ +R+ GTI GI
Sbjct: 297 GTMFTVYYKPRTSPSEFIVPFDQYMESV-KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGI 355
Query: 320 SDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHP 379
+ DP RW S WRS+KV WDE+++ R RVS W++EP P P+L P+ + RP P
Sbjct: 356 EESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVEPALA-P--PALSPVPMPRPKRP 412
Query: 380 STSSFNDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLGNDHNQQYQ 439
++ + D +S L R GT + + L L + Q E S L H + +
Sbjct: 413 RSNIAPSSPD--SSMLT--REGTTKANMDPLPASGLSR---VLQGQEYSTLRTKHTESVE 465
Score = 173 (66.0 bits), Expect = 4.2e-115, Sum P(2) = 4.2e-115
Identities = 31/71 (43%), Positives = 50/71 (70%)
Query: 690 TRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDREN 748
+R+ KV+K G ++GRS+D+S+F +Y EL EL ++F G+ P + W +V+ D EN
Sbjct: 732 SRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAP-KKDWLIVYTDEEN 790
Query: 749 DVLLLGDDPWE 759
D++L+GDDPW+
Sbjct: 791 DMMLVGDDPWQ 801
>TAIR|locus:2175098 [details] [associations]
symbol:ARF4 "auxin response factor 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0010158 "abaxial
cell fate specification" evidence=IGI] [GO:0010050 "vegetative
phase change" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AB011483 GO:GO:0010050
HOGENOM:HOG000241141 GO:GO:0010158 EMBL:AF013466 EMBL:AF344313
EMBL:AY080832 EMBL:AY113977 IPI:IPI00525857 RefSeq:NP_200853.1
UniGene:At.6797 ProteinModelPortal:Q9ZTX9 SMR:Q9ZTX9 IntAct:Q9ZTX9
STRING:Q9ZTX9 PaxDb:Q9ZTX9 PRIDE:Q9ZTX9 EnsemblPlants:AT5G60450.1
GeneID:836166 KEGG:ath:AT5G60450 GeneFarm:3367 TAIR:At5g60450
eggNOG:NOG277773 InParanoid:Q9ZTX9 OMA:RILYTDS PhylomeDB:Q9ZTX9
ProtClustDB:CLSN2686689 Genevestigator:Q9ZTX9 GermOnline:AT5G60450
Uniprot:Q9ZTX9
Length = 788
Score = 924 (330.3 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
Identities = 196/390 (50%), Positives = 246/390 (63%)
Query: 4 STSGLCQQGHE------GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATT 57
S+S C G G + SELWHACAGPL LP G VVYFPQGH EQ A +
Sbjct: 40 SSSSSCSSGSSSSSSSTGSASSIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMVS 99
Query: 58 NKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSP--------EEQKD 109
IP + +L PQ++C++ NV + A+ +TDEVY Q+TL PL +E K+
Sbjct: 100 YSS-PLEIPKF-DLNPQIVCRVVNVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKE 157
Query: 110 TFVPIEL-GIPS-KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQEL 167
E G S K+ + FCKTLTASDTSTHGGFSVPRRAAE F LD+ Q P+QEL
Sbjct: 158 LGGEEERNGSSSVKRTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQEL 217
Query: 168 IARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRR 227
IA+DLH VEWKFRHI+RGQP+RHLLTTGWS+FVS K LV+GD+VLF+ +E +L LGIRR
Sbjct: 218 IAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRDEGGELRLGIRR 277
Query: 228 AIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAV 287
A RP +P S++ +S +L T S F VF++PRA+ +EFVIP KY+ ++
Sbjct: 278 AARPRNGLPDSIIEKNSCS-NILSLVANAVSTKSMFHVFYSPRATHAEFVIPYEKYITSI 336
Query: 288 FHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGER 347
+ V +G RFRM FE ++S RR G +TG+ DLDP RW NS WR + V WDES +
Sbjct: 337 -RSPVCIGTRFRMRFEMDDSPERRCAGVVTGVCDLDPYRWPNSKWRCLLVRWDESFVSDH 395
Query: 348 QPRVSLWEIEPLTTFPMYPSLFPLRLKRPW 377
Q RVS WEI+P + P R KRPW
Sbjct: 396 QERVSPWEIDPSVSLPHLSIQSSPRPKRPW 425
Score = 197 (74.4 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
Identities = 57/199 (28%), Positives = 96/199 (48%)
Query: 566 FSGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLP--SSYNGKDAAVGTENCNTD-SQ 622
F+G P+ F Q+ S Y P + + S +P + YN + + G + + +
Sbjct: 541 FAGFSPAAAPNPFAYQANKSSYYPLALHG-IRSTHVPYQNPYNAGNQSSGPPSRAINFGE 599
Query: 623 NSVVFGVHIDSSGLLLPTTVSS-FTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSEL-LHN 680
+ F + GL P V++ +D + G N+ GC L +
Sbjct: 600 ETRKFDAQ-NEGGL--PNNVTADLPFKID--MMGKQKGSELNMNASSGCKLFGFSLPVET 654
Query: 681 VGQIDQLTPTRTFVKVYKSGS-VGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGW 739
Q + R KV+K GS VGR++D+SR + Y++L EL ++F +EG DP GW
Sbjct: 655 PASKPQSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDP-EKGW 713
Query: 740 QLVFVDRENDVLLLGDDPW 758
++++ D END++++GDDPW
Sbjct: 714 RILYTDSENDMMVVGDDPW 732
>TAIR|locus:2025991 [details] [associations]
symbol:ARF1 "auxin response factor 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;IDA;IPI] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0010150 "leaf
senescence" evidence=IGI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016246
"RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892 GO:GO:0009733
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0010150 EMBL:AC007258 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:U83245 EMBL:AY133723 EMBL:BT002748
IPI:IPI00518211 IPI:IPI00520405 PIR:D96621 RefSeq:NP_001031208.1
RefSeq:NP_176184.1 RefSeq:NP_849830.1 UniGene:At.74832
ProteinModelPortal:Q8L7G0 SMR:Q8L7G0 IntAct:Q8L7G0 STRING:Q8L7G0
EnsemblPlants:AT1G59750.1 EnsemblPlants:AT1G59750.3 GeneID:842268
KEGG:ath:AT1G59750 GeneFarm:3363 TAIR:At1g59750 eggNOG:NOG257828
HOGENOM:HOG000241141 InParanoid:Q8L7G0 KO:K14486 OMA:QMPSFNL
PhylomeDB:Q8L7G0 ProtClustDB:CLSN2679699 Genevestigator:Q8L7G0
GermOnline:AT1G59750 Uniprot:Q8L7G0
Length = 665
Score = 944 (337.4 bits), Expect = 1.3e-109, Sum P(2) = 1.3e-109
Identities = 187/364 (51%), Positives = 248/364 (68%)
Query: 23 ELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNV 82
ELWHACAGPLV+LP G RV YFP+GH EQ+ A+ ++ ++ +P++ NLP +++C++ N+
Sbjct: 22 ELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSF-NLPSKILCKVINI 80
Query: 83 TMHADVETDEVYAQMTLQP-LSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGG 141
A+ ETDEVYAQ+TL P L E P++ P K + FCKTLTASDTSTHGG
Sbjct: 81 QRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQE--PEKCTVHSFCKTLTASDTSTHGG 138
Query: 142 FSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVS 201
FSV RR A+ P LD S QPP QEL+A DLH+ EW FRHIFRGQP+RHLLTTGWSVFVS
Sbjct: 139 FSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVS 198
Query: 202 AKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXTNS 261
+K+LVAGD+ +F+ E +L +G+RR +R T +PSSV+SS SMHIG+L T +
Sbjct: 199 SKKLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAITTGT 258
Query: 262 CFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321
F+VF+ PR S SEF++ + +Y++A ++SVGMRF+M FE EE+ +R+ GTI G+ +
Sbjct: 259 IFSVFYKPRTSRSEFIVSVNRYLEAKTQ-KLSVGMRFKMRFEGEEAPEKRFSGTIVGVQE 317
Query: 322 LDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT--TFPMYPSLFPLRLKRPWHP 379
W +S WRS+KV WDE ++ R RVS WE+EPL + P P R KRP P
Sbjct: 318 NKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLVANSTPSSQPQPPQRNKRPRPP 377
Query: 380 STSS 383
S
Sbjct: 378 GLPS 381
Score = 159 (61.0 bits), Expect = 1.3e-109, Sum P(2) = 1.3e-109
Identities = 53/152 (34%), Positives = 79/152 (51%)
Query: 615 ENCNTD---SQNSVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLG-DSGFHNSMYGC 670
EN N D S SV V +D P + F D G S PL + S G
Sbjct: 474 ENVNVDECFSAASVSGAVAVDQ-----PVPSNEF----DSGQQSEPLNINQSDIPSGSGD 524
Query: 671 MQDSSELLHNVGQIDQLTPTRTFVKVYKSGS-VGRSLDISRFSSYNELREELGQMFGIEG 729
+ SS L + Q Q R+ KV+ GS VGR++D++R Y +L ++L +MF I+G
Sbjct: 525 PEKSS--LRSP-QESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKG 581
Query: 730 KFEDPLRSGWQLVFVDRENDVLLLGDDPW-EF 760
+ + + WQ+V+ D E+D++++GDDPW EF
Sbjct: 582 ELLESTKK-WQVVYTDDEDDMMMVGDDPWNEF 612
Score = 37 (18.1 bits), Expect = 9.8e-97, Sum P(2) = 9.8e-97
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 587 YEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFG 628
Y P +V+ L + + A EN NT+ ++S + G
Sbjct: 622 YTPEEVKKLSPKNKLAVNARMQLKADAEENGNTEGRSSSMAG 663
>TAIR|locus:2039124 [details] [associations]
symbol:ARF11 "auxin response factor 11" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0009506
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC006526 EMBL:AC006418
HOGENOM:HOG000241141 EMBL:AY669791 EMBL:AK229757 EMBL:BX837073
EMBL:AK229924 IPI:IPI00544804 IPI:IPI00547357 IPI:IPI00656718
PIR:A84904 RefSeq:NP_001031548.1 RefSeq:NP_182176.2
RefSeq:NP_973701.1 UniGene:At.36497 ProteinModelPortal:Q9ZPY6
SMR:Q9ZPY6 PRIDE:Q9ZPY6 EnsemblPlants:AT2G46530.3 GeneID:819264
KEGG:ath:AT2G46530 GeneFarm:3388 TAIR:At2g46530 eggNOG:NOG303653
InParanoid:Q9ZPY6 OMA:MFEIEGE PhylomeDB:Q9ZPY6
ProtClustDB:CLSN2681223 ArrayExpress:Q9ZPY6 Genevestigator:Q9ZPY6
Uniprot:Q9ZPY6
Length = 622
Score = 885 (316.6 bits), Expect = 1.0e-107, Sum P(3) = 1.0e-107
Identities = 176/349 (50%), Positives = 237/349 (67%)
Query: 20 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEV-DSHIPNYPNLPPQLICQ 78
L +ELW ACAGPLV +P G RV YFPQGH EQ+ A+TN+ V D IP + NLPP+++C+
Sbjct: 39 LYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVF-NLPPKILCR 97
Query: 79 LHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTST 138
+ +VT+ A+ ETDEVYAQ+TLQP + + + P L P+K + F K LTASDTST
Sbjct: 98 VLSVTLKAEHETDEVYAQITLQPEEDQSEPTSLDP-PLVEPAKPTVDSFVKILTASDTST 156
Query: 139 HGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSV 198
HGGFSV R+ A + PSLD + P QEL+ARDLH EW+F+HIFRGQP+RHLLTTGWS
Sbjct: 157 HGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWST 216
Query: 199 FVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXX 258
FV++KRLVAGD+ +F+ E L +G+RR + + MP+SV+SS SM +G+L
Sbjct: 217 FVTSKRLVAGDAFVFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVT 276
Query: 259 TNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITG 318
T + F VF+ PR S +F+I + KY+ A+ S+GMR+RM FE EES R + GTI G
Sbjct: 277 TTTIFVVFYKPRIS--QFIISVNKYMMAM-KNGFSLGMRYRMRFEGEESPERIFTGTIIG 333
Query: 319 ISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPS 367
DL +W S WRS+++ WDE ++ +R +VS WEIEP + + P+
Sbjct: 334 SGDLSS-QWPASKWRSLQIQWDEPSSIQRPNKVSPWEIEPFSPSALTPT 381
Score = 173 (66.0 bits), Expect = 1.0e-107, Sum P(3) = 1.0e-107
Identities = 42/103 (40%), Positives = 62/103 (60%)
Query: 660 DSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSGS-VGRSLDISRFSSYNELR 718
DS +S C +S ++ + Q T TR+ +KV G+ VGR++D++ SY+EL
Sbjct: 482 DSNISDSTTKCQDPNSS--NSPKEQKQQTSTRSRIKVQMQGTAVGRAVDLTLLRSYDELI 539
Query: 719 EELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPW-EF 760
+EL +MF IEG+ P + W +VF D E D +L+GDDPW EF
Sbjct: 540 KELEKMFEIEGELS-P-KDKWAIVFTDDEGDRMLVGDDPWNEF 580
Score = 41 (19.5 bits), Expect = 1.0e-107, Sum P(3) = 1.0e-107
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 509 ALQIRTDELLQRQQSNLPSP----SFSKANFMDSSTEI---SVSISPMQNMLGSLPEGSG 561
+LQI+ DE Q+ N SP FS + + T+ S P+ + GS P S
Sbjct: 348 SLQIQWDEPSSIQRPNKVSPWEIEPFSPSALTPTPTQQQSKSKRSRPISEITGS-PVASS 406
Query: 562 NLLNFS 567
L +FS
Sbjct: 407 FLSSFS 412
>TAIR|locus:2076765 [details] [associations]
symbol:ARF18 "auxin response factor 18" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL132959 HOGENOM:HOG000241141 EMBL:AF334717
EMBL:AY059746 EMBL:AY070463 EMBL:AY091392 EMBL:AK229945
IPI:IPI00524053 PIR:T47975 RefSeq:NP_567119.1 UniGene:At.17167
UniGene:At.69165 ProteinModelPortal:Q9C5W9 SMR:Q9C5W9 IntAct:Q9C5W9
EnsemblPlants:AT3G61830.1 GeneID:825356 KEGG:ath:AT3G61830
GeneFarm:3414 TAIR:At3g61830 eggNOG:NOG268528 InParanoid:Q9C5W9
OMA:RISQFIV PhylomeDB:Q9C5W9 ProtClustDB:CLSN2917487
Genevestigator:Q9C5W9 GermOnline:AT3G61830 Uniprot:Q9C5W9
Length = 602
Score = 903 (322.9 bits), Expect = 2.5e-104, Sum P(2) = 2.5e-104
Identities = 185/370 (50%), Positives = 247/370 (66%)
Query: 20 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSH-IPNYPNLPPQLICQ 78
L +ELW CAGPLV +P RV YFPQGH EQ+ A+TN+ ++S IP + +LPP+++C+
Sbjct: 22 LYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVF-DLPPKILCR 80
Query: 79 LHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTST 138
+ +VT+ A+ ETDEVYAQ+TLQP + + + P +G P+KQ + F K LTASDTST
Sbjct: 81 VLDVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPIVG-PTKQEFHSFVKILTASDTST 139
Query: 139 HGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSV 198
HGGFSV R+ A + PSLD + P QEL+ RDLH EW+F+HIFRGQP+RHLLTTGWS
Sbjct: 140 HGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWST 199
Query: 199 FVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXX 258
FVS+KRLVAGD+ +F+ E L +G+RR R + MP+SV+SS SMH+G+L
Sbjct: 200 FVSSKRLVAGDAFVFLRGENGDLRVGVRRLARHQSTMPTSVISSQSMHLGVLATASHAVR 259
Query: 259 TNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITG 318
T + F VF+ PR S +F++ + KY++A+ H S+G RFRM FE EES R + GTI G
Sbjct: 260 TTTIFVVFYKPRIS--QFIVGVNKYMEAIKHG-FSLGTRFRMRFEGEESPERIFTGTIVG 316
Query: 319 ISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEP-LTTFPMY-PSLFP---LRL 373
DL +W S WRS++V WDE T +R +VS WEIEP L T P+ P+ P +
Sbjct: 317 SGDLSS-QWPASKWRSLQVQWDEPTTVQRPDKVSPWEIEPFLATSPISTPAQQPQSKCKR 375
Query: 374 KRPWHPSTSS 383
RP PS +
Sbjct: 376 SRPIEPSVKT 385
Score = 150 (57.9 bits), Expect = 2.5e-104, Sum P(2) = 2.5e-104
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 690 TRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDREN 748
+R+ KV G +VGR++D++ SY+EL +EL +MF I+G+ R W +VF D E
Sbjct: 488 SRSRTKVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLL--ARDKWIVVFTDDEG 545
Query: 749 DVLLLGDDPW-EF 760
D++L GDDPW EF
Sbjct: 546 DMMLAGDDPWNEF 558
>TAIR|locus:2138096 [details] [associations]
symbol:ARF9 "auxin response factor 9" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 HOGENOM:HOG000241141
EMBL:AF082176 EMBL:AC002343 EMBL:AL078468 EMBL:AL161560
EMBL:AF344312 EMBL:AK221865 EMBL:AK228263 IPI:IPI00519218
IPI:IPI00657180 PIR:T08917 RefSeq:NP_001031706.1 RefSeq:NP_194129.1
UniGene:At.3396 ProteinModelPortal:Q9XED8 SMR:Q9XED8 IntAct:Q9XED8
PaxDb:Q9XED8 PRIDE:Q9XED8 EnsemblPlants:AT4G23980.1 GeneID:828498
KEGG:ath:AT4G23980 GeneFarm:3373 TAIR:At4g23980 eggNOG:NOG300390
InParanoid:Q9XED8 OMA:YAQITLI PhylomeDB:Q9XED8
ProtClustDB:CLSN2685375 Genevestigator:Q9XED8 Uniprot:Q9XED8
Length = 638
Score = 861 (308.1 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
Identities = 182/382 (47%), Positives = 243/382 (63%)
Query: 20 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNK-EVDSHIPNYPNLPPQLICQ 78
L ELW CAGPLV +P RV YFPQGH EQ+ A+T + ++++ P + LPP+++C
Sbjct: 9 LYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFV-LPPKILCN 67
Query: 79 LHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFV---PIELGIPSKQPTNYFCKTLTASD 135
+ NV++ A+ +TDEVYAQ+TL P+ E + P EL P + F K LTASD
Sbjct: 68 VMNVSLQAEKDTDEVYAQITLIPVGTEVDEPMSPDPSPPELQRPK---VHSFSKVLTASD 124
Query: 136 TSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTG 195
TSTHGGFSV R+ A + P LD + Q P QEL+A D+H +WKF+HIFRGQP+RHLLTTG
Sbjct: 125 TSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTG 184
Query: 196 WSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXX 255
WS FV++KRLVAGD+ +F+ E +L +G+RRA + MPSSV+SS SMH+G+L
Sbjct: 185 WSTFVTSKRLVAGDTFVFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARH 244
Query: 256 XXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGT 315
T + F V++ PR S +F+I L KY++A+ + + SVGMRF+M FE E+S RRY GT
Sbjct: 245 ATQTKTMFIVYYKPRTS--QFIISLNKYLEAMSN-KFSVGMRFKMRFEGEDSPERRYSGT 301
Query: 316 ITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKR 375
+ G+ D P W +S WR ++V WDE + R +VS WEIEP P L+ KR
Sbjct: 302 VIGVKDCSP-HWKDSKWRCLEVHWDEPASISRPNKVSPWEIEPFVNSENVPKSVMLKNKR 360
Query: 376 PWHPSTSSFNDNRDETASGLNW 397
P S S D TAS L W
Sbjct: 361 PRQVSEVSALDV-GITASNL-W 380
Score = 171 (65.3 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
Identities = 55/194 (28%), Positives = 95/194 (48%)
Query: 579 PQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQ-------NSVVFGVHI 631
PQQ E ++ D++++ S S KD+ + + + Q N +FG+ +
Sbjct: 402 PQQCHRDANEDAKKSDWLNN-SYSVSNVAKDSTLNDQMVSPVEQKKPETTANYRLFGIDL 460
Query: 632 DSSGLLLPTTVSSFTTSVD---PGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLT 688
SS L +P ++ ++ P + S S Q+ +E Q Q +
Sbjct: 461 MSSSLAVPEEKTAPMRPINISKPTMDSHSDPKSEISKVSEEKKQEPAEGSPKEVQSKQSS 520
Query: 689 PTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRE 747
TR+ KV G VGR++D++ YNEL +++ ++F I+G+ R+ W++VF D E
Sbjct: 521 STRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRS--RNQWEIVFTDDE 578
Query: 748 NDVLLLGDDPW-EF 760
D++L+GDDPW EF
Sbjct: 579 GDMMLVGDDPWPEF 592
>TAIR|locus:2057609 [details] [associations]
symbol:ETT "ETTIN" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0009850 "auxin
metabolic process" evidence=TAS] [GO:0010158 "abaxial cell fate
specification" evidence=IGI] [GO:0010050 "vegetative phase change"
evidence=IGI;RCA;IMP] [GO:0007389 "pattern specification process"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048438 "floral whorl development" evidence=RCA] [GO:0048439
"flower morphogenesis" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=ISS] InterPro:IPR003340
InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009733 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009850 GO:GO:0010050 HOGENOM:HOG000241141
KO:K14486 EMBL:U89296 EMBL:AF007788 EMBL:U78721 EMBL:AF336917
EMBL:AF360313 EMBL:AY056365 EMBL:AB199791 IPI:IPI00527337
PIR:E84750 PIR:T03278 RefSeq:NP_180942.1 UniGene:At.10360
ProteinModelPortal:O23661 SMR:O23661 IntAct:O23661 STRING:O23661
EnsemblPlants:AT2G33860.1 GeneID:817956 KEGG:ath:AT2G33860
GeneFarm:3366 TAIR:At2g33860 eggNOG:NOG315820 InParanoid:O23661
OMA:HESNNES PhylomeDB:O23661 ProtClustDB:CLSN2913114
Genevestigator:O23661 GermOnline:AT2G33860 GO:GO:0010158
Uniprot:O23661
Length = 608
Score = 837 (299.7 bits), Expect = 7.2e-86, Sum P(2) = 7.2e-86
Identities = 174/353 (49%), Positives = 231/353 (65%)
Query: 15 GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQ 74
G CL ELWHACAGPL+SLP G+ V+YFPQGH EQ D Y LPP
Sbjct: 48 GGGVCL--ELWHACAGPLISLPKRGSLVLYFPQGHLEQAP-------DFSAAIY-GLPPH 97
Query: 75 LICQLHNVTMHADVETDEVYAQMTLQPLSPE-EQK--DTFVPIELG-----IPSKQPTNY 126
+ C++ +V +HA+ TDEVYAQ++L P S + E+K + + ++ G + + T +
Sbjct: 98 VFCRILDVKLHAETTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPH 157
Query: 127 -FCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRG 185
FCKTLTASDTSTHGGFSVPRRAAE FP LD+S P+QEL+ARDLH +EW+FRHI+RG
Sbjct: 158 MFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRG 217
Query: 186 QPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSM 245
QP+RHLLTTGWS FV+ K+LV+GD+VLF+ + +L LG+RRA + S + +M
Sbjct: 218 QPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNM 277
Query: 246 HIGLLXXXXXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETE 305
+ T+S F++ +NP+AS S F+IP K++K V + +GMRF+ E+E
Sbjct: 278 NHNNFSEVAHAISTHSVFSISYNPKASWSNFIIPAPKFLKVVDYP-FCIGMRFKARVESE 336
Query: 306 ESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEP 358
++S RR G I+GISDLDP+RW S WR + V WD+ A Q RVS WEIEP
Sbjct: 337 DASERRSPGIISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIEP 389
Score = 41 (19.5 bits), Expect = 7.2e-86, Sum P(2) = 7.2e-86
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 621 SQNSVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYG 669
SQ ++ G + S +LP +VSS +SV S+ P G H+ G
Sbjct: 500 SQRNIWCGPFQNFSTRILPPSVSSSPSSVLLTNSNSPNGRLEDHHGGSG 548
>TAIR|locus:2026145 [details] [associations]
symbol:ARF12 "auxin response factor 12" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 EMBL:AY669792 EMBL:AC007454
IPI:IPI00544760 PIR:C86467 RefSeq:NP_174691.2 UniGene:At.51185
ProteinModelPortal:Q9XID4 SMR:Q9XID4 IntAct:Q9XID4
EnsemblPlants:AT1G34310.1 GeneID:840331 KEGG:ath:AT1G34310
GeneFarm:3390 TAIR:At1g34310 eggNOG:NOG264447 PhylomeDB:Q9XID4
ProtClustDB:CLSN2681760 ArrayExpress:Q9XID4 Genevestigator:Q9XID4
GermOnline:AT1G34310 Uniprot:Q9XID4
Length = 593
Score = 706 (253.6 bits), Expect = 2.4e-85, Sum P(2) = 2.4e-85
Identities = 151/364 (41%), Positives = 215/364 (59%)
Query: 14 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPP 73
+G + +LW CAGPL +P +G +V YFPQGH E V +T +E++ P +LP
Sbjct: 18 DGSKSYVYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQP-ICDLPS 76
Query: 74 QLICQLHNVTMHADVE--TDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTL 131
+L C++ + +H VE +DE YA++TL P + +P + + N F K L
Sbjct: 77 KLQCRV--IAIHLKVENNSDETYAEITLMP----DTTQVVIPTQNENQFRPLVNSFTKVL 130
Query: 132 TASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHL 191
TASDTS HGGF VP++ A + PSLD S PAQEL+A DLH +W+F H +RG P+RHL
Sbjct: 131 TASDTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHNYRGTPQRHL 190
Query: 192 LTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLX 251
LTTGW+ F ++K+LVAGD ++F+ E +L +GIRRA +PSS++S D M G++
Sbjct: 191 LTTGWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVVA 250
Query: 252 XXXXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRR 311
FTV + PR+S +F++ K++ AV + + +VG RF M E ++ S RR
Sbjct: 251 SAKHAFDNQCMFTVVYKPRSS--KFIVSYDKFLDAV-NNKFNVGSRFTMRLEGDDFSERR 307
Query: 312 YMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPL 371
GTI G+SD P W S WRS++V WDE T+ +VS W+IE L P F L
Sbjct: 308 CFGTIIGVSDFSP-HWKCSEWRSLEVQWDEFTSFPGPKKVSPWDIEHLMPAINVPRSFLL 366
Query: 372 RLKR 375
+ KR
Sbjct: 367 KNKR 370
Score = 167 (63.8 bits), Expect = 2.4e-85, Sum P(2) = 2.4e-85
Identities = 63/241 (26%), Positives = 111/241 (46%)
Query: 524 NLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSL 583
N+P K + EI S S + + L +G N S A P + ++ + +
Sbjct: 359 NVPRSFLLKNKRLREVNEIGSSSSHLLPPI--LTQGQENE-QLSVASPMNISLRY-RDAT 414
Query: 584 GSKYEPSQVRDFVHSMSLPS-SYNGKDAAVGTENCNTDS-QNSVVFGVHIDSSGLLLPTT 641
PS++ +P +YN + EN T + N +FGV +D+ P
Sbjct: 415 EDAMNPSKLLMSYPVQPMPKLNYNNQMVTEMEENITTKTGTNFRLFGVTLDT-----PPV 469
Query: 642 VSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSG- 700
+ + +S + G F S ++ +E+ Q Q + +RT KV G
Sbjct: 470 IKDPIEEIGSEISKLTEGKK-FGLSQ--TLRSPTEI-----QNKQFSSSRTCTKVQMQGV 521
Query: 701 SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPW-E 759
++GR++D+S + Y++L EL ++F I+G+ + R+ W++ F D + D +L+GDDPW E
Sbjct: 522 TIGRAVDLSVLNGYDQLILELEKLFDIKGQLQT--RNQWEIAFTDSDEDKMLVGDDPWPE 579
Query: 760 F 760
F
Sbjct: 580 F 580
>TAIR|locus:2009298 [details] [associations]
symbol:ARF21 "auxin response factor 21" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC023279 EMBL:AC023913 IPI:IPI00539451
PIR:E86468 RefSeq:NP_174701.2 UniGene:At.51930
ProteinModelPortal:Q9C8N9 SMR:Q9C8N9 EnsemblPlants:AT1G34410.1
GeneID:840344 KEGG:ath:AT1G34410 GeneFarm:3425 TAIR:At1g34410
PhylomeDB:Q9C8N9 Genevestigator:Q9C8N9 GermOnline:AT1G34410
Uniprot:Q9C8N9
Length = 606
Score = 709 (254.6 bits), Expect = 9.3e-84, Sum P(2) = 9.3e-84
Identities = 150/364 (41%), Positives = 217/364 (59%)
Query: 14 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPP 73
+G + +LW CAGPL +P +G V YFPQG+ E V A+T +E++ P +LP
Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQP-ICDLPS 76
Query: 74 QLICQLHNVTMHADVE--TDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTL 131
+L C++ + +H VE +DE+YA++TL P + +P + + N F K L
Sbjct: 77 KLQCRV--IAIHLKVENNSDEIYAEITLMP----DTTQVVIPTQSENRFRPLVNSFTKVL 130
Query: 132 TASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHL 191
TASDTS +GGFSVP++ A + P LD S PAQE++A DLHD +W+FRH +RG P+RH
Sbjct: 131 TASDTSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYRGTPQRHS 190
Query: 192 LTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLX 251
LTTGW+ F+++K+LV GD ++F+ E +L +GIRRA +PSS++S D M G++
Sbjct: 191 LTTGWNEFITSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIA 250
Query: 252 XXXXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRR 311
F V + PR+S +F++ K++ AV + + +VG RF M FE ++ S RR
Sbjct: 251 SAKHAFDNQCIFIVVYKPRSS--QFIVSYDKFLDAV-NNKFNVGSRFTMRFEGDDFSERR 307
Query: 312 YMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPL 371
Y GTI G+SD P W S WRS++V WDE + R +VS WEIE L P L
Sbjct: 308 YFGTIIGVSDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIEHLVPALNVPRSSLL 366
Query: 372 RLKR 375
+ KR
Sbjct: 367 KNKR 370
Score = 149 (57.5 bits), Expect = 9.3e-84, Sum P(2) = 9.3e-84
Identities = 60/241 (24%), Positives = 109/241 (45%)
Query: 524 NLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSL 583
N+P S K + E S S + + L +G + S A P + ++ + +
Sbjct: 359 NVPRSSLLKNKRLREVNEFGSSSSHLLPPI--LTQGQ-EIGQLSVASPMNISLRY-RDTT 414
Query: 584 GSKYEPSQVRDFVHSMSLPS-SYNGKDAAVGTENCNTDS-QNSVVFGVHIDSSGLLLPTT 641
+ PS++ +P +YN + EN T + N +FGV +D+ P
Sbjct: 415 EAAMNPSRLLMSYPVQPMPKLNYNNQMVTQIEENITTKAGTNFRLFGVTLDT-----PPM 469
Query: 642 VSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSG- 700
+ + +S + F S ++ E+ Q Q + +RT KV G
Sbjct: 470 IKDPIKQIGSDISKLTERKK-FGQSQ--TLRSPIEI-----QSKQFSSSRTCTKVQMQGV 521
Query: 701 SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPW-E 759
++GR++D+S + Y++L EL ++F I+G+ + R+ W++ F D + +L+GDDPW E
Sbjct: 522 TIGRAVDLSVLNGYDQLILELEKLFDIKGQLQT--RNQWKIAFTDSDGYEMLVGDDPWPE 579
Query: 760 F 760
F
Sbjct: 580 F 580
>TAIR|locus:2036288 [details] [associations]
symbol:ARF22 "auxin response factor 22" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 ProtClustDB:CLSN2681760
EMBL:AC023913 EMBL:AY669796 IPI:IPI00545778 PIR:C86468
RefSeq:NP_174699.2 UniGene:At.51186 ProteinModelPortal:Q9C8N7
SMR:Q9C8N7 IntAct:Q9C8N7 EnsemblPlants:AT1G34390.1 GeneID:840341
KEGG:ath:AT1G34390 GeneFarm:3426 TAIR:At1g34390 OMA:NITTNAN
PhylomeDB:Q9C8N7 Genevestigator:Q9C8N7 Uniprot:Q9C8N7
Length = 598
Score = 684 (245.8 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 147/365 (40%), Positives = 215/365 (58%)
Query: 14 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPP 73
+G + +LW CAGPL +P +G ++ YFPQG+ E V A+T +E++ P +LP
Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKP-ICDLPS 76
Query: 74 QLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTA 133
+L C++ + + + +DE YA++TL P + +P + + N F K LTA
Sbjct: 77 KLQCRVIAIQLKVENNSDETYAEITLMP----DTTQVVIPTQNENQFRPLVNSFTKVLTA 132
Query: 134 SDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLT 193
SDTS GGF VP++ A + P LD S P QEL+A DLH +W+F H +RG P+RHLLT
Sbjct: 133 SDTS--GGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYRGTPQRHLLT 190
Query: 194 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXX 253
TGW+ F ++K+LVAGD ++F+ E +L +GIRRA +PSS++S +SM G++
Sbjct: 191 TGWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIISIESMRHGVIASA 250
Query: 254 XXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYM 313
F V + PR+S +F++ K++ AV + + +VG RF M FE ++ S RRY
Sbjct: 251 KHAFDNQCMFIVVYKPRSS--QFIVSYDKFLDAV-NNKFNVGSRFTMRFEGDDFSERRYF 307
Query: 314 GTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIE---PLTTFPMYPSLFP 370
GTI G+SD P W S WR+++V WDE + R +VS WEIE P P PSL
Sbjct: 308 GTIIGVSDFSP-HWKCSEWRNLEVQWDEFASFSRPNKVSPWEIEHLMPALNVPR-PSL-- 363
Query: 371 LRLKR 375
L+ KR
Sbjct: 364 LKNKR 368
Score = 173 (66.0 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 63/241 (26%), Positives = 112/241 (46%)
Query: 524 NLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSL 583
N+P PS K + EI S S + + L +G + S A P + + + +
Sbjct: 357 NVPRPSLLKNKRLREVNEIGSSSSHLLPPI--LTQGQ-EIGQLSVASPMNISLTY-RDTT 412
Query: 584 GSKYEPSQVRDFVHSMSLPS-SYNGKDAAVGTENCNTDS-QNSVVFGVHIDSSGLLLPTT 641
PS++ +P +YN + EN T + N +FGV L+ P+
Sbjct: 413 EDVMNPSRLLMSYPVQPMPKLNYNNQMVTQIEENITTKTGTNFRLFGV-----SLVTPSV 467
Query: 642 VSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSG- 700
+ + +S + G F S ++ +E+ Q Q + TRT KV G
Sbjct: 468 IKDPIEEIGSEISKLTEGKK-FGQSQ--TLRSPTEI-----QSKQFSSTRTCTKVQMQGV 519
Query: 701 SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPW-E 759
++ R++D+S + Y++L EL ++F ++G+ + R+ W++ F D ++D +L+GDDPW E
Sbjct: 520 TIERAVDLSVLNGYDQLILELEELFDLKGQLQT--RNQWEIAFTDSDDDKMLVGDDPWPE 577
Query: 760 F 760
F
Sbjct: 578 F 578
>TAIR|locus:2014731 [details] [associations]
symbol:ARF14 "auxin response factor 14" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC007887 IPI:IPI00548517 PIR:G86476
RefSeq:NP_174786.1 UniGene:At.39556 ProteinModelPortal:Q9LQE8
SMR:Q9LQE8 IntAct:Q9LQE8 PRIDE:Q9LQE8 EnsemblPlants:AT1G35540.1
GeneID:840450 KEGG:ath:AT1G35540 GeneFarm:3394 TAIR:At1g35540
OMA:DITEDAM PhylomeDB:Q9LQE8 Genevestigator:Q9LQE8 Uniprot:Q9LQE8
Length = 605
Score = 689 (247.6 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
Identities = 140/347 (40%), Positives = 206/347 (59%)
Query: 14 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPP 73
+G + +LW CAGPL +P +G +V YFPQGH E V A+T +E++ P + P
Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQP-ICDFPS 76
Query: 74 QLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTA 133
+L C++ + + + +DE YA++TL P + +P + + N F K LTA
Sbjct: 77 KLQCRVIAIQLKVENNSDETYAEITLMP----DTTQVVIPTQNQNQFRPLVNSFTKVLTA 132
Query: 134 SDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLT 193
SDTS HGGFSVP++ A + P LD S P QE++A DLH +W+FRHI+RG +RHLLT
Sbjct: 133 SDTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQRHLLT 192
Query: 194 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXX 253
GW+ F ++K+LV GD ++F+ E +L +GIRRA +PSS++S +SM G++
Sbjct: 193 IGWNAFTTSKKLVEGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIVSIESMRHGIIASA 252
Query: 254 XXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYM 313
F V + PR+S +F++ K++ V + + +VG RF M FE ++ S RR
Sbjct: 253 KHAFDNQCMFIVVYKPRSS--QFIVSYDKFLDVV-NNKFNVGSRFTMRFEGDDFSERRSF 309
Query: 314 GTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 360
GTI G+SD P W S WRS++V WDE + R +VS W+IE LT
Sbjct: 310 GTIIGVSDFSP-HWKCSEWRSLEVQWDEFASFPRPNQVSPWDIEHLT 355
Score = 155 (59.6 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
Identities = 55/202 (27%), Positives = 102/202 (50%)
Query: 571 PSMLR-QQFPQQSLGSKYEPS-QVRDFVHSMSLPS----SYNGKDAA-VGTENCNTDSQN 623
P++ + Q+ QQS+ + S + RD PS SY + A + N T +
Sbjct: 387 PTLTQGQEIGQQSMATPMNISLRYRDITEDAMTPSRLLMSYPVQPMAKLNYNNVVTPIEE 446
Query: 624 SVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGF-HNSMYGCMQDSSELLHNVG 682
++ + +S L ++++ + DP V + L S +G S++L +
Sbjct: 447 NIT--TNAVASFRLFGVSLATPSVIKDP-VEQIGLEISRLTQEKKFG----QSQILRSPT 499
Query: 683 QID--QLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGW 739
+I Q + TRT KV G ++GR++D+S + Y++L EL ++F ++G+ + R+ W
Sbjct: 500 EIQSKQFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQ--ARNQW 557
Query: 740 QLVFVDRENDVLLLGDDPW-EF 760
++ F + E D +L+G+DPW EF
Sbjct: 558 EIAFTNNEEDKMLVGEDPWPEF 579
>TAIR|locus:2206717 [details] [associations]
symbol:ARF20 "auxin response factor 20" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC069160 HOGENOM:HOG000241141
eggNOG:NOG264447 ProtClustDB:CLSN2681760 EMBL:AY669795
IPI:IPI00656906 PIR:D86473 RefSeq:NP_174758.2 UniGene:At.51187
ProteinModelPortal:Q9C7I9 SMR:Q9C7I9 IntAct:Q9C7I9 PaxDb:Q9C7I9
PRIDE:Q9C7I9 EnsemblPlants:AT1G35240.1 GeneID:840413
KEGG:ath:AT1G35240 GeneFarm:3424 TAIR:At1g35240 PhylomeDB:Q9C7I9
Genevestigator:Q9C7I9 GermOnline:AT1G35240 Uniprot:Q9C7I9
Length = 590
Score = 671 (241.3 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
Identities = 144/364 (39%), Positives = 210/364 (57%)
Query: 14 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPP 73
+G + +LW CAGPL +P +G V YFPQG+ E V A+T +E++ P +LP
Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQP-ICDLPS 76
Query: 74 QLICQLHNVTMHADVE--TDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTL 131
+L C++ + +H VE +DE YA++TL P + +P + + N F K L
Sbjct: 77 KLQCRV--IAIHLKVENNSDETYAEITLMP----DTTQVVIPTQSENQFRPLVNSFTKVL 130
Query: 132 TASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHL 191
TASDTS +GGF VP++ A + P L PAQEL+A+DLH +W+FRH +RG P+RH
Sbjct: 131 TASDTSAYGGFFVPKKHAIECLPPLPL----PAQELLAKDLHGNQWRFRHSYRGTPQRHS 186
Query: 192 LTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLX 251
LTTGW+ F ++K+LV GD ++F+ E +L +GIRRA +PSS++S D M G++
Sbjct: 187 LTTGWNEFTTSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIA 246
Query: 252 XXXXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRR 311
F V + P S+F++ K++ A+ + + VG RF M FE ++ S RR
Sbjct: 247 SAKHALDNQCIFIVVYKPSIRSSQFIVSYDKFLDAM-NNKFIVGSRFTMRFEGDDFSERR 305
Query: 312 YMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPL 371
Y GTI G++D P W S WRS++V WDE + R +VS WEIE L + P L
Sbjct: 306 YFGTIIGVNDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIEHLMSALNVPRSSLL 364
Query: 372 RLKR 375
+ KR
Sbjct: 365 KNKR 368
Score = 156 (60.0 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
Identities = 63/256 (24%), Positives = 113/256 (44%)
Query: 509 ALQIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSG 568
+L+++ DE + N SP + + M S+ + S L + E + S
Sbjct: 327 SLEVQWDEFASFSRPNKVSP-WEIEHLM-SALNVPRSSLLKNKRLREVNEFGQEIGQLSV 384
Query: 569 AGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPS-SYNGKDAAVGTENCNTDS-QNSVV 626
A P ++ + + PS++ +P +YN + EN T + N +
Sbjct: 385 ASPMNTSLRY-RDTTEDAMNPSRLLMSYPVQPMPKLNYNNQMVTQIEENITTKAVTNFRL 443
Query: 627 FGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQ 686
FGV L +P + + +S + G F S ++ E+ Q Q
Sbjct: 444 FGV-----SLAIPLVIKDPIEEIGSDISKLTEGKK-FGQSQ--TLRSPIEI-----QSKQ 490
Query: 687 LTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVD 745
TRT KV G ++GR++D+S + Y++L EL ++F ++G+ + R+ W++ F D
Sbjct: 491 FGSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQT--RNQWKIAFTD 548
Query: 746 RENDVLLLGDDPW-EF 760
+ +L+GDDPW EF
Sbjct: 549 SDGYEMLVGDDPWPEF 564
>TAIR|locus:2057517 [details] [associations]
symbol:ARF10 "auxin response factor 10" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0048829 "root cap
development" evidence=IGI;IMP] [GO:0051301 "cell division"
evidence=IGI] [GO:0009734 "auxin mediated signaling pathway"
evidence=IMP] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=IMP] [GO:0009743 "response to carbohydrate
stimulus" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0031540 "regulation of anthocyanin biosynthetic
process" evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048441 "petal development" evidence=IMP] [GO:0048442 "sepal
development" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009738
GO:GO:0009734 GO:GO:0051301 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0048589 GO:GO:0009743
GO:GO:0048441 GO:GO:0048442 GO:GO:0010154 GO:GO:0035198
GO:GO:0048366 GO:GO:0007389 EMBL:AF099735 EMBL:AC006283
EMBL:AF325073 EMBL:AF336919 EMBL:EU550097 EMBL:EU550098
EMBL:EU550099 EMBL:EU550100 EMBL:EU550101 EMBL:EU550102
EMBL:EU550103 EMBL:EU550104 EMBL:EU550105 EMBL:EU550106
EMBL:EU550107 EMBL:EU550108 EMBL:EU550109 EMBL:EU550110
EMBL:EU550111 EMBL:EU550112 EMBL:EU550113 EMBL:EU550114
EMBL:EU550115 EMBL:EU550116 EMBL:EU550117 EMBL:EU550118
EMBL:EU550119 EMBL:AK228534 IPI:IPI00530405 PIR:G84683
RefSeq:NP_180402.1 UniGene:At.13730 ProteinModelPortal:Q9SKN5
SMR:Q9SKN5 IntAct:Q9SKN5 STRING:Q9SKN5 PRIDE:Q9SKN5
EnsemblPlants:AT2G28350.1 GeneID:817382 KEGG:ath:AT2G28350
GeneFarm:3383 TAIR:At2g28350 eggNOG:NOG315592 InParanoid:Q9SKN5
OMA:ERESGRC PhylomeDB:Q9SKN5 ProtClustDB:CLSN2913131
ArrayExpress:Q9SKN5 Genevestigator:Q9SKN5 GermOnline:AT2G28350
GO:GO:0031540 Uniprot:Q9SKN5
Length = 693
Score = 524 (189.5 bits), Expect = 3.9e-79, Sum P(3) = 3.9e-79
Identities = 108/222 (48%), Positives = 144/222 (64%)
Query: 18 KCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLIC 77
K L+ +LWHACAG +V +P++ + V YF QGH+E A D H P +PP ++C
Sbjct: 5 KSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPP----DFHAPR---VPPLILC 57
Query: 78 QLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGI--PS-------KQPTNYFC 128
++ +V AD ETDEV+A++TL PL P D LG+ PS K+ F
Sbjct: 58 RVVSVKFLADAETDEVFAKITLLPL-PGNDLDLENDAVLGLTPPSSDGNGNGKEKPASFA 116
Query: 129 KTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPK 188
KTLT SD + GGFSVPR AE +FP LD+S +PP Q +IA+D+H WKFRHI+RG P+
Sbjct: 117 KTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPR 176
Query: 189 RHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIR 230
RHLLTTGWS FV+ K+L+AGDS++F+ +E L +GIRRA R
Sbjct: 177 RHLLTTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKR 218
Score = 211 (79.3 bits), Expect = 3.9e-79, Sum P(3) = 3.9e-79
Identities = 46/114 (40%), Positives = 66/114 (57%)
Query: 263 FTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESS-VRRYMGTITGISD 321
F V + PRAS EF + V++ R GMRF+M FETE+SS + +MGT++ +
Sbjct: 287 FEVVYYPRASTPEFCVKAAD-VRSAMRIRWCSGMRFKMAFETEDSSRISWFMGTVSAVQV 345
Query: 322 LDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFP-MYPSLFPLRLK 374
DP+RW NS WR ++V WDE + RVS W +E ++ P ++ S F R K
Sbjct: 346 ADPIRWPNSPWRLLQVAWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFSPRKK 399
Score = 92 (37.4 bits), Expect = 3.9e-79, Sum P(3) = 3.9e-79
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 695 KVY-KSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 753
KV+ +S VGR+LD+S SY EL +L +MF IE + D L +V+ D + +
Sbjct: 584 KVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHIEER-SDLLT---HVVYRDANGVIKRI 639
Query: 754 GDDPW 758
GD+P+
Sbjct: 640 GDEPF 644
Score = 43 (20.2 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 208 GDSVLFIWNEKNQLLLGIRRAIRPPTVM--PSSVLSSDSMHIGLLXXXXXXXXTNSCFTV 265
G+S+ ++ N+ N GI+ A + + PS L SD +++ + F
Sbjct: 428 GESMCYLSNDNNNAPAGIQGARQAQQLFGSPSPSLLSD-LNLSSYTGNNKLHSP-AMFLS 485
Query: 266 FFNPR 270
FNPR
Sbjct: 486 SFNPR 490
>TAIR|locus:2126460 [details] [associations]
symbol:ARF16 "auxin response factor 16" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0009733 "response to auxin
stimulus" evidence=IEP] [GO:0048829 "root cap development"
evidence=IGI;IMP] [GO:0051301 "cell division" evidence=IGI]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009733 GO:GO:0009734
GO:GO:0051301 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL161576 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0035198 GO:GO:0007389
HOGENOM:HOG000241141 eggNOG:NOG315592 EMBL:AL078464 EMBL:AY059792
EMBL:AY091198 EMBL:EU550120 EMBL:EU550121 EMBL:EU550122
EMBL:EU550123 EMBL:EU550124 EMBL:EU550125 EMBL:EU550126
EMBL:EU550127 EMBL:EU550128 EMBL:EU550129 EMBL:EU550130
EMBL:EU550131 EMBL:EU550132 EMBL:EU550133 EMBL:EU550134
EMBL:EU550135 EMBL:EU550136 EMBL:EU550137 EMBL:EU550138
EMBL:EU550139 EMBL:EU550140 EMBL:EU550141 EMBL:EU550142
EMBL:EU550143 IPI:IPI00528149 PIR:T08984 RefSeq:NP_567841.1
UniGene:At.3365 ProteinModelPortal:Q93YR9 SMR:Q93YR9 IntAct:Q93YR9
STRING:Q93YR9 EnsemblPlants:AT4G30080.1 GeneID:829131
KEGG:ath:AT4G30080 GeneFarm:3406 TAIR:At4g30080 InParanoid:Q93YR9
OMA:GHAENAY PhylomeDB:Q93YR9 ProtClustDB:CLSN2917636
Genevestigator:Q93YR9 GermOnline:AT4G30080 Uniprot:Q93YR9
Length = 670
Score = 505 (182.8 bits), Expect = 2.2e-77, Sum P(3) = 2.2e-77
Identities = 105/220 (47%), Positives = 143/220 (65%)
Query: 15 GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQ 74
G K L+ +LWHACAG +V +P + ++V YFPQGH+E VD N P +PP
Sbjct: 11 GTEKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDC----VD--FGNLP-IPPM 63
Query: 75 LICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKD-TFVPIE--LGIPSK-QPTNYFCKT 130
++C++ + AD E+DEV+A++ L PL +E D + E G S + T F KT
Sbjct: 64 VLCRVLAIKYMADAESDEVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSEKTPSFAKT 123
Query: 131 LTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRH 190
LT SD + GGFSVPR AE +FP LD++ +PP Q ++A+D+H WKFRHI+RG P+RH
Sbjct: 124 LTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRH 183
Query: 191 LLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIR 230
LLTTGWS FV+ K+LVAGDS++F+ E L +GIRRA R
Sbjct: 184 LLTTGWSNFVNQKKLVAGDSIVFMRAENGDLCVGIRRAKR 223
Score = 207 (77.9 bits), Expect = 2.2e-77, Sum P(3) = 2.2e-77
Identities = 48/122 (39%), Positives = 67/122 (54%)
Query: 263 FTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESS-VRRYMGTITGISD 321
F V + PRAS SEF + +A GMRF+M FETE+SS + +MGT++ ++
Sbjct: 289 FEVVYYPRASTSEFCVKALD-ARAAMRIPWCSGMRFKMAFETEDSSRISWFMGTVSAVNV 347
Query: 322 LDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYP--SLFPLRLKR--PW 377
DP+RW NS WR ++V WDE + RV+ W +E ++ P S P R K P
Sbjct: 348 SDPIRWPNSPWRLLQVAWDEPDLLQNVKRVNPWLVELVSNVHPIPLTSFSPPRKKMRLPQ 407
Query: 378 HP 379
HP
Sbjct: 408 HP 409
Score = 99 (39.9 bits), Expect = 2.2e-77, Sum P(3) = 2.2e-77
Identities = 68/251 (27%), Positives = 109/251 (43%)
Query: 523 SNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQS 582
+++P PSF +N + S+ +S S + N+ L N + G S L + +
Sbjct: 416 NSIPVPSFP-SNPLIRSSPLS---SVLDNVPVGLQGARHNAHQYYGLSSSDLHHYYLNRP 471
Query: 583 LGSKYEPSQVRDFVHSMSLPS--SYNGKD---AAVGTENCN-TDSQNSVVFGVHIDSSG- 635
PS ++ S+ L + + N K +GT CN T S+ S HI G
Sbjct: 472 PPPP-PPSSLQ-LSPSLGLRNIDTKNEKGFCFLTMGTTPCNDTKSKKS-----HIVLFGK 524
Query: 636 LLLPTTVSSFTTSVDPG-VSSMPLGDSGFH-NSMYGCMQDSSELLHNVGQ-IDQLTPTRT 692
L+LP S S D + + G + N + G SS+ + + + T
Sbjct: 525 LILPEEQLSEKGSTDTANIEKTQISSGGSNQNGVAGREFSSSDEGSPCSKKVHDASGLET 584
Query: 693 -FVKVY-KSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDV 750
KV+ +S VGR+LD+S SY EL +L MFGI K + L S +++ D +
Sbjct: 585 GHCKVFMESDDVGRTLDLSVLGSYEELSRKLSDMFGI--KKSEMLSS---VLYRDASGAI 639
Query: 751 LLLGDDPW-EF 760
G++P+ EF
Sbjct: 640 KYAGNEPFSEF 650
>TAIR|locus:2008991 [details] [associations]
symbol:ARF13 "AUXIN RESPONSE FACTOR 13" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006863 "purine nucleobase transport" evidence=RCA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GO:GO:0005634 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 IPI:IPI00938986 RefSeq:NP_001154393.1
UniGene:At.51184 ProteinModelPortal:F4HT52 SMR:F4HT52 PRIDE:F4HT52
EnsemblPlants:AT1G34170.3 GeneID:840316 KEGG:ath:AT1G34170
OMA:PEFCNMA ArrayExpress:F4HT52 Uniprot:F4HT52
Length = 546
Score = 479 (173.7 bits), Expect = 1.6e-70, Sum P(3) = 1.6e-70
Identities = 102/251 (40%), Positives = 144/251 (57%)
Query: 23 ELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNV 82
+LW+ CAGPL LP G +V YFPQGH E + +T E+D HI +LP +L C++ +
Sbjct: 25 KLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELD-HIRPIFDLPSKLRCRVVAI 83
Query: 83 TMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYF-CKTLTASDTSTHGG 141
D TDEVYAQ++L P + E + +++P YF K LTASD S GG
Sbjct: 84 DRKVDKNTDEVYAQISLMPDTTEVMTHNTT-----MDTRRPIVYFFSKILTASDVSLSGG 138
Query: 142 FSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTG--WSVF 199
+P++ A + FP LD S Q L+A+DL+ EW F+H+FRG P+RH+ T+G WSVF
Sbjct: 139 LIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSVF 198
Query: 200 VSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXT 259
+ KRL+ GD + + E +L GIRRA +PSSV+S++ M G++ T
Sbjct: 199 ATTKRLIVGDIFVLLRGENGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFKT 258
Query: 260 NSCFTVFFNPR 270
F V + PR
Sbjct: 259 KCMFNVVYKPR 269
Score = 153 (58.9 bits), Expect = 1.6e-70, Sum P(3) = 1.6e-70
Identities = 35/80 (43%), Positives = 48/80 (60%)
Query: 299 RMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEP 358
RM FE ++ S +RY GTI G++D+ P W +S WRS+KV WDE + R +VS W+IE
Sbjct: 269 RMQFEGKDFSEKRYDGTIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDIEH 327
Query: 359 LTTFPMYP-SLFPLRLKRPW 377
L P S L+ K+ W
Sbjct: 328 L--IPSSDISQSSLKKKKHW 345
Score = 122 (48.0 bits), Expect = 1.6e-70, Sum P(3) = 1.6e-70
Identities = 23/68 (33%), Positives = 44/68 (64%)
Query: 695 KVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 753
KV+ G ++ R++D++ YN+L ++L ++F ++ + R+ W++VF + E +L+
Sbjct: 437 KVHMQGVAISRAVDLTAMHGYNQLIQKLEELFDLKDELRT--RNQWEIVFTNNEGAEMLV 494
Query: 754 GDDPW-EF 760
GDDPW EF
Sbjct: 495 GDDPWPEF 502
>TAIR|locus:2029436 [details] [associations]
symbol:ARF17 "auxin response factor 17" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=IMP] [GO:0009734 "auxin mediated signaling pathway"
evidence=TAS] [GO:0048830 "adventitious root development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
InterPro:IPR003340 InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0009555
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0048830 GO:GO:0009653
EMBL:AC009243 EMBL:AC012193 EMBL:AY056184 EMBL:BT002749
EMBL:EU550144 EMBL:EU550145 EMBL:EU550146 EMBL:EU550147
EMBL:EU550148 EMBL:EU550149 EMBL:EU550150 EMBL:EU550151
EMBL:EU550152 EMBL:EU550153 EMBL:EU550154 EMBL:EU550155
EMBL:EU550156 EMBL:EU550157 EMBL:EU550158 EMBL:EU550159
EMBL:EU550160 EMBL:EU550161 EMBL:EU550162 EMBL:EU550163
EMBL:EU550164 EMBL:EU550165 EMBL:EU550166 EMBL:EU550167
IPI:IPI00522722 PIR:D96808 RefSeq:NP_565161.1 UniGene:At.26363
ProteinModelPortal:Q84WU6 SMR:Q84WU6 IntAct:Q84WU6 STRING:Q84WU6
PRIDE:Q84WU6 EnsemblPlants:AT1G77850.1 GeneID:844120
KEGG:ath:AT1G77850 GeneFarm:3413 TAIR:At1g77850 eggNOG:NOG325741
OMA:IWRACAG PhylomeDB:Q84WU6 ProtClustDB:CLSN2689276
Genevestigator:Q84WU6 GermOnline:AT1G77850 Uniprot:Q84WU6
Length = 585
Score = 436 (158.5 bits), Expect = 2.1e-51, Sum P(2) = 2.1e-51
Identities = 87/208 (41%), Positives = 125/208 (60%)
Query: 24 LWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVT 83
+W ACAG V +P + +RV YFPQGH E S +P+ + P C + ++
Sbjct: 20 IWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLL-----STLPSSTSPVP---CIITSIQ 71
Query: 84 MHADVETDEVYAQMTLQPLSPEEQKDT----FVPIELGIPSKQPTNYFCKTLTASDTSTH 139
+ AD TDEV+A + LQP++ ++ T F + + F K LT SD +
Sbjct: 72 LLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKVTTFAKILTPSDANNG 131
Query: 140 GGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVF 199
GGFSVPR A+ VFP L+F + PP Q+L D+H W FRHI+RG P+RHLLTTGWS F
Sbjct: 132 GGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTGWSKF 191
Query: 200 VSAKRLVAGDSVLFIWNEKNQLLLGIRR 227
V++K+L+AGDSV+F+ +++ +G+RR
Sbjct: 192 VNSKKLIAGDSVVFMRKSADEMFIGVRR 219
Score = 126 (49.4 bits), Expect = 2.1e-51, Sum P(2) = 2.1e-51
Identities = 36/118 (30%), Positives = 57/118 (48%)
Query: 263 FTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESS-VRRYMGTITGI-S 320
F V F P A SEFV+ + V++ + G R +M ETE+SS + + G ++
Sbjct: 284 FEVVFYPAAGWSEFVVR-AEDVESSMSMYWTPGTRVKMAMETEDSSRITWFQGIVSSTYQ 342
Query: 321 DLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFP--LRLKRP 376
+ P W S W+ +++ WDE + RV+ W++E + FP RLK P
Sbjct: 343 ETGP--WRGSPWKQLQITWDEPEILQNVKRVNPWQVEIAAHATQLHTPFPPAKRLKYP 398
Score = 52 (23.4 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 20/75 (26%), Positives = 30/75 (40%)
Query: 377 WHPSTSSFNDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMF---PWMQQRV---EPSFL 430
W P T E +S + W QG+ + +Q G + PW Q ++ EP L
Sbjct: 312 WTPGTRVKMAMETEDSSRITWF------QGIVSSTYQETGPWRGSPWKQLQITWDEPEIL 365
Query: 431 GNDHN-QQYQAMLAA 444
N +Q +AA
Sbjct: 366 QNVKRVNPWQVEIAA 380
>TAIR|locus:2037169 [details] [associations]
symbol:ARF23 "auxin response factor 23" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
HOGENOM:HOG000241141 EMBL:AC022314 IPI:IPI00526589 PIR:E96503
RefSeq:NP_175062.1 UniGene:At.52022 ProteinModelPortal:Q9LP07
SMR:Q9LP07 EnsemblPlants:AT1G43950.1 GeneID:840994
KEGG:ath:AT1G43950 GeneFarm:3427 TAIR:At1g43950 OMA:PTENENQ
PhylomeDB:Q9LP07 Genevestigator:Q9LP07 GermOnline:AT1G43950
Uniprot:Q9LP07
Length = 222
Score = 409 (149.0 bits), Expect = 1.7e-37, P = 1.7e-37
Identities = 90/215 (41%), Positives = 127/215 (59%)
Query: 14 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPP 73
+G + +LW CAGPL +P +G +V YFPQGH E V A+T +E++ PN +LP
Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNC-DLPS 76
Query: 74 QLICQLHNVTMHADVE--TDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTL 131
+L C++ + +H VE +DE Y ++TL P + +P E + N F K L
Sbjct: 77 KLQCRV--IAIHLKVENNSDETYVEITLMP----DTTQVVIPTENENQFRPIVNSFTKVL 130
Query: 132 TASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHL 191
TASDTS G FSVP + A + P LD S PAQELIA DLH +W+F+H +R P+
Sbjct: 131 TASDTSAQGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHSYR-VPRGD- 188
Query: 192 LTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIR 226
TTGW+ F ++K+LV GD ++F E +L +GIR
Sbjct: 189 -TTGWNAFTTSKKLVVGDVIVFARGETGELRVGIR 222
>TAIR|locus:2079537 [details] [associations]
symbol:NGA2 "NGATHA2" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AL138642 HSSP:Q9ZWM9 HOGENOM:HOG000239355
ProtClustDB:CLSN2682823 EMBL:AK117646 EMBL:BT025866 EMBL:AY085197
IPI:IPI00523321 PIR:T47989 RefSeq:NP_191756.1 UniGene:At.34201
ProteinModelPortal:Q9M268 SMR:Q9M268 EnsemblPlants:AT3G61970.1
GeneID:825370 KEGG:ath:AT3G61970 TAIR:At3g61970 eggNOG:NOG273145
InParanoid:Q9M268 OMA:SSSMERE PhylomeDB:Q9M268
Genevestigator:Q9M268 Uniprot:Q9M268
Length = 299
Score = 144 (55.7 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 41/131 (31%), Positives = 66/131 (50%)
Query: 107 QKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQE 166
Q+D PIE S + + F K +T SD +P++ AE+ FP LD S + +
Sbjct: 3 QEDKEKPIEEASSSMEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDNSTTNDSNK 61
Query: 167 LIARDLHDVE---WKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNE--KNQL 221
+ + D W+FR+ + + +++T GWS FV K+L AGD V F + K++L
Sbjct: 62 GLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSCNKDKL 121
Query: 222 LLGIRRAIRPP 232
+ RR + P
Sbjct: 122 YIDWRRRPKIP 132
>TAIR|locus:2200950 [details] [associations]
symbol:NGA3 "NGATHA3" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
HSSP:Q9ZWM9 EMBL:AC007323 eggNOG:NOG237610 HOGENOM:HOG000239355
EMBL:BX814729 IPI:IPI00536920 PIR:B86141 RefSeq:NP_171611.1
UniGene:At.49492 ProteinModelPortal:Q9MAN1 SMR:Q9MAN1 STRING:Q9MAN1
PRIDE:Q9MAN1 EnsemblPlants:AT1G01030.1 GeneID:839321
KEGG:ath:AT1G01030 TAIR:At1g01030 InParanoid:Q9MAN1 OMA:RNIVGSE
PhylomeDB:Q9MAN1 ProtClustDB:CLSN2912766 Genevestigator:Q9MAN1
Uniprot:Q9MAN1
Length = 358
Score = 144 (55.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 60/240 (25%), Positives = 96/240 (40%)
Query: 83 TMHADVETD---EVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTH 139
T +D E D E+ + + S + +P+ + IP + + F K +T SD
Sbjct: 10 TTSSDQEQDRDQELTSNIGASSSSGPSGNNNNLPMMM-IPPPEKEHMFDKVVTPSDVGKL 68
Query: 140 GGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVF 199
+P++ AE+ FP LD S L +D + W+FR+ + + +++T GWS F
Sbjct: 69 NRLVIPKQHAERYFP-LDSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRF 127
Query: 200 VSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXT 259
V K+L AGD V F +R I + S L D H +
Sbjct: 128 VKEKKLDAGDIVSF------------QRGIGDES--ERSKLYIDWRHRPDMSLVQAHQFG 173
Query: 260 NSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRY-MGTITG 318
N F F + S PL +Y H +++G R + T+ Y G + G
Sbjct: 174 NFGFNFNFPTTSQYSNRFHPLPEYNSVPIHRGLNIGNHQRSYYNTQRQEFVGYGYGNLAG 233
Score = 40 (19.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 431 GNDHNQQYQAML 442
GND+NQQ ++ L
Sbjct: 294 GNDYNQQEESWL 305
>TAIR|locus:2090527 [details] [associations]
symbol:IAA31 "indole-3-acetic acid inducible 31"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=TAS] [GO:0009630 "gravitropism"
evidence=IMP] [GO:0048364 "root development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP]
InterPro:IPR003311 InterPro:IPR011525 Pfam:PF02309 PROSITE:PS50962
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009733
GO:GO:0009734 GO:GO:0003700 GO:GO:0006351 GO:GO:0048364
GO:GO:0009630 GO:GO:0022621 EMBL:AB022219 HOGENOM:HOG000005696
EMBL:AY054274 EMBL:BT000543 IPI:IPI00540266 RefSeq:NP_188387.1
UniGene:At.22356 IntAct:Q8H174 EnsemblPlants:AT3G17600.1
GeneID:821026 KEGG:ath:AT3G17600 GeneFarm:3238 TAIR:At3g17600
eggNOG:NOG267119 InParanoid:Q8H174 OMA:KITRPER PhylomeDB:Q8H174
ProtClustDB:CLSN2913488 Genevestigator:Q8H174 GermOnline:AT3G17600
Uniprot:Q8H174
Length = 158
Score = 118 (46.6 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 27/71 (38%), Positives = 37/71 (52%)
Query: 690 TRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDREN 748
T FVKVY G +GR LD+ FS Y L E L MF + R L + D++
Sbjct: 71 TSLFVKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSIICGNRDRKHHVLTYEDKDG 130
Query: 749 DVLLLGDDPWE 759
D +++GD PW+
Sbjct: 131 DWMMVGDIPWD 141
>TAIR|locus:2041404 [details] [associations]
symbol:NGA1 "NGATHA1" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC004411
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 GO:GO:0048366 EMBL:AC005310 HSSP:Q9ZWM9 EMBL:AK118045
EMBL:BT008534 IPI:IPI00537675 PIR:T02200 RefSeq:NP_566089.1
UniGene:At.36441 ProteinModelPortal:O82799 SMR:O82799 IntAct:O82799
STRING:O82799 EnsemblPlants:AT2G46870.1 GeneID:819300
KEGG:ath:AT2G46870 TAIR:At2g46870 eggNOG:NOG237610
HOGENOM:HOG000239355 InParanoid:O82799 OMA:MECGESG PhylomeDB:O82799
ProtClustDB:CLSN2682823 Genevestigator:O82799 Uniprot:O82799
Length = 310
Score = 137 (53.3 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 39/120 (32%), Positives = 58/120 (48%)
Query: 97 MTLQPLSPEEQKDTFVPI--ELGIPSKQPTNY-FCKTLTASDTSTHGGFSVPRRAAEKVF 153
MT L+ +E ++ P+ E G + F K +T SD +P++ AE+ F
Sbjct: 2 MTDLSLTRDEDEEEAKPLAEEEGAREVADREHMFDKVVTPSDVGKLNRLVIPKQHAERFF 61
Query: 154 PSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 213
P LD S L DL W+FR+ + + +++T GWS FV K+L AGD V F
Sbjct: 62 P-LDSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSF 120
>TAIR|locus:2085969 [details] [associations]
symbol:EDF3 "ethylene response DNA binding factor 3"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009691 "cytokinin biosynthetic
process" evidence=RCA] InterPro:IPR001471 InterPro:IPR003340
InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863
PROSITE:PS51032 SMART:SM00380 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009873 EMBL:AB028607
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 Gene3D:3.30.730.10
SUPFAM:SSF54171 HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484
KO:K09287 ProtClustDB:CLSN2682511 EMBL:AJ441073 EMBL:AK229415
EMBL:AY087951 IPI:IPI00523797 RefSeq:NP_189201.1 UniGene:At.37331
ProteinModelPortal:Q9LS06 SMR:Q9LS06 EnsemblPlants:AT3G25730.1
GeneID:822164 KEGG:ath:AT3G25730 TAIR:At3g25730 InParanoid:Q9LS06
OMA:NAHSKSE Genevestigator:Q9LS06 Uniprot:Q9LS06
Length = 333
Score = 130 (50.8 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 127 FCKTLTASDTSTHGGFSVPRRAAEKVFP-SL-DFSLQPPAQELIARDLHDVEWKFRHIFR 184
F KT+T SD +P+ AEK FP L + ++ L D++ W+FR+ +
Sbjct: 183 FEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFRYSYW 242
Query: 185 GQPKRHLLTTGWSVFVSAKRLVAGDSVLF 213
+ ++LT GWS FV KRL AGD + F
Sbjct: 243 NSSQSYVLTKGWSRFVKEKRLCAGDLISF 271
>TAIR|locus:2117007 [details] [associations]
symbol:NGA4 "NGATHA4" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AF096370 EMBL:AL161492 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:FJ873734 EMBL:BT029520 EMBL:AB493670 IPI:IPI00543194
PIR:T01944 RefSeq:NP_192059.4 UniGene:At.34418
ProteinModelPortal:O82595 SMR:O82595 STRING:O82595 PRIDE:O82595
EnsemblPlants:AT4G01500.1 GeneID:826750 KEGG:ath:AT4G01500
TAIR:At4g01500 eggNOG:NOG287578 InParanoid:O82595 OMA:YSSERRE
Genevestigator:O82595 Uniprot:O82595
Length = 333
Score = 129 (50.5 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 31/94 (32%), Positives = 48/94 (51%)
Query: 120 SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKF 179
S++ + F K LT SD +P++ AE FP D L +D + W+F
Sbjct: 29 SERREHMFDKVLTPSDVGKLNRLVIPKQHAENFFPLED---NQNGTVLDFQDKNGKMWRF 85
Query: 180 RHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 213
R+ + + +++T GWS FV K+L AGD+V F
Sbjct: 86 RYSYWNSSQSYVMTKGWSRFVKEKKLFAGDTVSF 119
>TAIR|locus:2205319 [details] [associations]
symbol:RAV1 "related to ABI3/VP1 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009741 "response to
brassinosteroid stimulus" evidence=IEP] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0048366 "leaf
development" evidence=IMP] [GO:0048527 "lateral root development"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0009963 "positive regulation of
flavonoid biosynthetic process" evidence=RCA] [GO:0010363
"regulation of plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001471 InterPro:IPR003340 InterPro:IPR016177
Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863 PROSITE:PS51032
SMART:SM00380 SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0045892 EMBL:AC011810 GO:GO:0009873
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0048527
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0009910 GO:GO:0048366
GO:GO:0009741 EMBL:AB013886 EMBL:AY063855 EMBL:AY091291
IPI:IPI00544013 PIR:T51329 RefSeq:NP_172784.1 UniGene:At.20558
PDB:1WID PDBsum:1WID ProteinModelPortal:Q9ZWM9 SMR:Q9ZWM9
STRING:Q9ZWM9 EnsemblPlants:AT1G13260.1 GeneID:837886
KEGG:ath:AT1G13260 TAIR:At1g13260 eggNOG:NOG266118
HOGENOM:HOG000237484 InParanoid:Q9ZWM9 KO:K09287 OMA:ICETPAI
PhylomeDB:Q9ZWM9 ProtClustDB:CLSN2682511 EvolutionaryTrace:Q9ZWM9
Genevestigator:Q9ZWM9 GermOnline:AT1G13260 Uniprot:Q9ZWM9
Length = 344
Score = 128 (50.1 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 33/100 (33%), Positives = 49/100 (49%)
Query: 127 FCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQ 186
F K +T SD +P+ AEK FP ++ L D++ W+FR+ +
Sbjct: 188 FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNS 247
Query: 187 PKRHLLTTGWSVFVSAKRLVAGDSVLFIWN--EKNQLLLG 224
+ ++LT GWS FV K L AGD V F + + QL +G
Sbjct: 248 SQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 287
>DICTYBASE|DDB_G0285837 [details] [associations]
symbol:DDB_G0285837 "BRWD group protein"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR017986 InterPro:IPR001487 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00297
SMART:SM00320 dictyBase:DDB_G0285837 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
EMBL:AAFI02000080 HSSP:Q03330 RefSeq:XP_638029.1
ProteinModelPortal:Q54MP8 EnsemblProtists:DDB0220685 GeneID:8625294
KEGG:ddi:DDB_G0285837 InParanoid:Q54MP8 OMA:DEITDIY Uniprot:Q54MP8
Length = 2200
Score = 119 (46.9 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 31/95 (32%), Positives = 51/95 (53%)
Query: 263 FTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDL 322
+TV ++ P ++++ +K K++ RFRM + Y GTI ISD
Sbjct: 1350 YTVIYHVSDIP-DYLVLASKVRKSMLTDWTVPNKRFRMFYPASGW----YNGTIIEISDS 1404
Query: 323 DPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIE 357
DP+ + NS W ++KV WD++ E + RV+ WEI+
Sbjct: 1405 DPL-FPNSPWENIKVLWDDT---EEEDRVNYWEID 1435
Score = 67 (28.6 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 22/93 (23%), Positives = 44/93 (47%)
Query: 560 SGNLLNFSGAGPS---MLRQQFPQQSLGSKYEPSQVRDFVHSMSL-PSSYNGKDAAVGTE 615
+ N N+S P+ M Q +PQ S + Q+ + ++ L P++YN + T
Sbjct: 1585 NNNTSNYSYLDPNNSNMYMQTYPQNSTMQNQQQPQLNNIYYNSQLQPTNYNYTNN-FNTN 1643
Query: 616 NCNTDSQNSVVFGVHIDSSGLLLPTTVSSFTTS 648
N ++ +S + + +++ PT +S TT+
Sbjct: 1644 YSNFNNSSSNIMNYNTNNNFNSPPTATTSNTTT 1676
Score = 53 (23.7 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 36 PTVGTRVVYFPQGHSEQVAATTNKEVDSHIPN 67
P VG + YF QGH++ + ++S++ N
Sbjct: 1217 PQVGDFIFYFYQGHTKYLEKFPPNGIESNLDN 1248
>TAIR|locus:2039165 [details] [associations]
symbol:ABS2 "ABNORMAL SHOOT 2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0009062 "fatty
acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0080167 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC007017 EMBL:AC007135
HSSP:Q9ZWM9 HOGENOM:HOG000239355 EMBL:AK117587 EMBL:AJ441075
IPI:IPI00522172 IPI:IPI00531123 PIR:F84776 RefSeq:NP_181152.2
RefSeq:NP_850260.1 UniGene:At.23308 ProteinModelPortal:Q8GYJ2
SMR:Q8GYJ2 PaxDb:Q8GYJ2 EnsemblPlants:AT2G36080.1 GeneID:818181
KEGG:ath:AT2G36080 TAIR:At2g36080 eggNOG:NOG253490
InParanoid:Q8GYJ2 OMA:AQAVESQ PhylomeDB:Q8GYJ2
ProtClustDB:CLSN2680069 Genevestigator:Q8GYJ2 Uniprot:Q8GYJ2
Length = 244
Score = 124 (48.7 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 33/105 (31%), Positives = 51/105 (48%)
Query: 127 FCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIA--RDLHDVEWKFRHIFR 184
F K LT SD +P++ AE+ FP + + L+ D W+FR+ +
Sbjct: 38 FEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYW 97
Query: 185 GQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKN--QLLLGIRR 227
+ ++LT GWS +V K L AGD VLF + + + +G RR
Sbjct: 98 NSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRR 142
>TAIR|locus:2012438 [details] [associations]
symbol:RAV2 "related to ABI3/VP1 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0010167 "response to nitrate"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0015706 "nitrate transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 EMBL:AC011914 EMBL:AC011665
HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484 KO:K09287
ProtClustDB:CLSN2682511 EMBL:AB013887 EMBL:AF360312 EMBL:AY056361
EMBL:AY085908 EMBL:AF003101 IPI:IPI00548727 PIR:T51330
RefSeq:NP_001185352.1 RefSeq:NP_564947.1 UniGene:At.25344
ProteinModelPortal:P82280 SMR:P82280 DIP:DIP-59694N STRING:P82280
PaxDb:P82280 PRIDE:P82280 EnsemblPlants:AT1G68840.1
EnsemblPlants:AT1G68840.2 GeneID:843216 KEGG:ath:AT1G68840
TAIR:At1g68840 InParanoid:P82280 OMA:MDSSCID PhylomeDB:P82280
Genevestigator:P82280 Uniprot:P82280
Length = 352
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 33/90 (36%), Positives = 46/90 (51%)
Query: 127 FCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVE---WKFRHIF 183
F K +T SD +P++ AEK FP L S P + + + DV W+FR+ +
Sbjct: 188 FEKAVTPSDVGKLNRLVIPKQHAEKHFP-LP-SPSPAVTKGVLINFEDVNGKVWRFRYSY 245
Query: 184 RGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 213
+ ++LT GWS FV K L AGD V F
Sbjct: 246 WNSSQSYVLTKGWSRFVKEKNLRAGDVVTF 275
>TAIR|locus:2164215 [details] [associations]
symbol:DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX
4" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009062 "fatty acid catabolic
process" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=IMP] [GO:0010358 "leaf shaping" evidence=IGI] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048366 "leaf development" evidence=IGI] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010073 EMBL:AB006700 GO:GO:0010358
HSSP:Q9ZWM9 HOGENOM:HOG000239355 IPI:IPI00517655 IPI:IPI00891280
RefSeq:NP_001119177.1 RefSeq:NP_196243.2 UniGene:At.54745
ProteinModelPortal:Q9FNI3 SMR:Q9FNI3 EnsemblPlants:AT5G06250.2
GeneID:830512 KEGG:ath:AT5G06250 TAIR:At5g06250 eggNOG:NOG256843
InParanoid:Q9FNI3 OMA:LECQMDE PhylomeDB:Q9FNI3
ProtClustDB:CLSN2702250 Genevestigator:Q9FNI3 Uniprot:Q9FNI3
Length = 282
Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 127 FCKTLTASDTSTHGGFSVPRRAAEKVFP---------SLDFSLQPPAQELIARDLHDVEW 177
F K+LT SD +P++ AEK FP + D S L D W
Sbjct: 46 FEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKSW 105
Query: 178 KFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN--EKNQLLLGIRR 227
+FR+ + + ++LT GWS FV K+L GD V F + + +L +G RR
Sbjct: 106 RFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRR 157
>TAIR|locus:2031185 [details] [associations]
symbol:TEM1 "TEMPRANILLO 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;NAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0009873 "ethylene mediated signaling pathway" evidence=NAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
metal ion transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0048573 HSSP:Q9ZWM9
HOGENOM:HOG000237484 KO:K09287 ProtClustDB:CLSN2682511
EMBL:AY091069 EMBL:AY122941 IPI:IPI00518546 PIR:A86386
RefSeq:NP_173927.1 UniGene:At.17318 ProteinModelPortal:Q9C6M5
SMR:Q9C6M5 DIP:DIP-59693N PaxDb:Q9C6M5 PRIDE:Q9C6M5
EnsemblPlants:AT1G25560.1 GeneID:839143 KEGG:ath:AT1G25560
TAIR:At1g25560 eggNOG:NOG250438 InParanoid:Q9C6M5 OMA:NDVAVEC
PhylomeDB:Q9C6M5 Genevestigator:Q9C6M5 Uniprot:Q9C6M5
Length = 361
Score = 123 (48.4 bits), Expect = 0.00022, P = 0.00022
Identities = 32/94 (34%), Positives = 47/94 (50%)
Query: 127 FCKTLTASDTSTHGGFSVPRRAAEKVFP----SLDFSLQPPAQELIARDLHDVE---WKF 179
F KT+T SD +P++ AEK FP + + P + + +L D W+F
Sbjct: 195 FEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWRF 254
Query: 180 RHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 213
R+ + + ++LT GWS FV K L AGD V F
Sbjct: 255 RYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCF 288
>TAIR|locus:2080782 [details] [associations]
symbol:AT3G11580 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009062
"fatty acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC008153 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:AJ441076 EMBL:AK175281 EMBL:BT029371 IPI:IPI00539345
IPI:IPI00547561 RefSeq:NP_187765.2 RefSeq:NP_850559.1
UniGene:At.39724 ProteinModelPortal:Q8RYD3 SMR:Q8RYD3
EnsemblPlants:AT3G11580.1 GeneID:820331 KEGG:ath:AT3G11580
TAIR:At3g11580 eggNOG:NOG285931 InParanoid:Q8RYD3 OMA:CHGDAVE
PhylomeDB:Q8RYD3 ProtClustDB:CLSN2918062 Genevestigator:Q8RYD3
Uniprot:Q8RYD3
Length = 267
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 40/136 (29%), Positives = 62/136 (45%)
Query: 122 QPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFP----------SLDFSLQPPAQELIARD 171
Q + F K+LT SD +P++ AEK FP D + L D
Sbjct: 24 QRESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFED 83
Query: 172 LHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN--EKNQLLLGIRRAI 229
WKFR+ + + ++LT GWS +V K L AGD V F + + ++L +G RR
Sbjct: 84 ESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLHRLFIGWRRRG 143
Query: 230 RPPTVMPSSVLSSDSM 245
+ SV+S +++
Sbjct: 144 EASSSPAVSVVSQEAL 159
>TAIR|locus:2180557 [details] [associations]
symbol:IAA28 "AT5G25890" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009733
"response to auxin stimulus" evidence=IMP] [GO:0010102 "lateral
root morphogenesis" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR003311 InterPro:IPR011525 Pfam:PF02309 PROSITE:PS50962
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009733
GO:GO:0009734 GO:GO:0003700 GO:GO:0006351 EMBL:AF149413
GO:GO:0010102 EMBL:AC005405 HOGENOM:HOG000238261 KO:K14484
EMBL:AF149816 EMBL:BT000427 EMBL:BT002175 IPI:IPI00545995
PIR:T52143 RefSeq:NP_568478.1 UniGene:At.11439 IntAct:Q9XFM0
EnsemblPlants:AT5G25890.1 GeneID:832658 KEGG:ath:AT5G25890
GeneFarm:3188 TAIR:At5g25890 eggNOG:NOG283222 InParanoid:Q9XFM0
OMA:WEMFVST PhylomeDB:Q9XFM0 ProtClustDB:CLSN2917715
Genevestigator:Q9XFM0 GermOnline:AT5G25890 Uniprot:Q9XFM0
Length = 175
Score = 110 (43.8 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 693 FVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVL 751
+VK+ G +GR +++S +++Y +L + Q+F + ++ L + LV+ D E D +
Sbjct: 82 YVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLFSKKDSWD--LNRQYTLVYEDTEGDKV 139
Query: 752 LLGDDPWE 759
L+GD PWE
Sbjct: 140 LVGDVPWE 147
Score = 37 (18.1 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 371 LRLKRPWHPSTSSFNDNRDETAS 393
LRL P H TS+ N N + S
Sbjct: 9 LRLAPPCHQFTSNNNINGSKQKS 31
>TAIR|locus:2051154 [details] [associations]
symbol:IAA13 "auxin-induced protein 13" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] InterPro:IPR003311
InterPro:IPR011525 Pfam:PF02309 PROSITE:PS50962 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733 GO:GO:0009734
GO:GO:0003700 GO:GO:0006351 EMBL:AC002332 HOGENOM:HOG000238261
UniGene:At.10797 ProtClustDB:CLSN2681806 EMBL:U18415 EMBL:AF332399
EMBL:BT005874 EMBL:AY085194 EMBL:Z26543 IPI:IPI00536192
IPI:IPI00548760 PIR:S58499 RefSeq:NP_001118434.1 RefSeq:NP_180889.1
RefSeq:NP_850205.1 UniGene:At.74387 IntAct:Q38831 STRING:Q38831
EnsemblPlants:AT2G33310.2 GeneID:817894 KEGG:ath:AT2G33310
GeneFarm:3160 TAIR:At2g33310 eggNOG:NOG308656 InParanoid:Q38831
OMA:LEDMFFR PhylomeDB:Q38831 Genevestigator:Q38831
GermOnline:AT2G33310 Uniprot:Q38831
Length = 247
Score = 111 (44.1 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 693 FVKVYKSG-SVGRSLDISRFSSYNELREELGQMF--------GIEGKFEDPLR-----SG 738
F+KV G ++GR +D++ SSY L + L MF G+ +F PLR S
Sbjct: 131 FIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSE 190
Query: 739 WQLVFVDRENDVLLLGDDPW 758
+ L + D+E D +L+GD PW
Sbjct: 191 FVLTYEDKEGDWMLVGDVPW 210
Score = 45 (20.9 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 133 ASDTSTHGGFSVPRRAAEKV 152
A+D+++H G S PR +++ V
Sbjct: 59 AADSASHAGSSPPRSSSQVV 78
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 773 720 0.00085 121 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 629 (67 KB)
Total size of DFA: 402 KB (2194 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 59.83u 0.15s 59.98t Elapsed: 00:00:02
Total cpu time: 59.84u 0.15s 59.99t Elapsed: 00:00:02
Start: Sat May 11 02:08:04 2013 End: Sat May 11 02:08:06 2013