Query 004105
Match_columns 773
No_of_seqs 359 out of 815
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 14:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 5.9E-30 2E-34 239.2 14.2 114 119-232 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 2.3E-16 8E-21 150.5 12.1 96 124-229 46-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.4 4.8E-13 1.6E-17 119.9 10.7 94 124-228 8-101 (104)
4 1na6_A Ecorii, restriction end 95.2 0.025 8.5E-07 62.0 6.6 92 124-216 18-123 (404)
5 1vd2_A Protein kinase C, IOTA 92.8 0.18 6.1E-06 44.9 6.1 56 692-754 7-62 (89)
6 2ktr_A Sequestosome-1; autopha 91.8 0.11 3.9E-06 48.3 3.8 60 689-755 18-94 (117)
7 1wmh_B Partitioning defective- 91.0 0.37 1.3E-05 42.8 6.0 57 692-755 7-64 (86)
8 2kkc_A Sequestosome-1; P62, PB 90.0 0.23 7.8E-06 45.2 3.9 59 690-755 4-79 (102)
9 1q1o_A Cell division control p 82.9 1.6 5.6E-05 39.5 5.4 63 692-756 6-75 (98)
10 1pqs_A Cell division control p 78.7 1.9 6.4E-05 37.4 4.1 47 708-756 8-54 (77)
11 2bkf_A Zinc-finger protein NBR 68.1 9.8 0.00033 33.9 6.1 53 692-753 7-60 (87)
12 1wj6_A KIAA0049 protein, RSGI 62.8 10 0.00035 34.6 5.3 53 692-753 15-68 (101)
13 2k8i_A SLYD, peptidyl-prolyl C 60.6 24 0.00081 34.2 7.9 102 205-321 3-114 (171)
14 2kfw_A FKBP-type peptidyl-prol 59.4 11 0.00036 37.6 5.3 102 205-321 3-114 (196)
15 3cgm_A SLYD, peptidyl-prolyl C 58.2 26 0.0009 33.4 7.7 100 205-321 3-110 (158)
16 2kr7_A FKBP-type peptidyl-prol 56.0 45 0.0015 31.4 8.8 105 202-321 4-119 (151)
17 4dt4_A FKBP-type 16 kDa peptid 44.8 43 0.0015 32.5 6.9 105 204-321 24-138 (169)
18 1oey_J P40-PHOX, neutrophil cy 43.6 32 0.0011 31.6 5.3 40 707-755 28-67 (107)
19 3p8d_A Medulloblastoma antigen 39.3 38 0.0013 28.7 4.8 53 290-360 5-57 (67)
20 3pr9_A FKBP-type peptidyl-prol 37.8 1.6E+02 0.0054 28.1 9.5 105 205-321 2-123 (157)
21 3s6w_A Tudor domain-containing 34.0 35 0.0012 26.7 3.6 28 291-321 1-28 (54)
22 1mhn_A SurviVal motor neuron p 33.5 41 0.0014 26.9 3.9 28 291-321 3-30 (59)
23 4a4f_A SurviVal of motor neuro 33.2 39 0.0013 27.6 3.8 42 290-343 7-48 (64)
24 2jng_A Cullin-7, CUL-7; P53 bi 33.1 40 0.0014 31.0 4.2 73 274-361 6-78 (105)
25 3qii_A PHD finger protein 20; 32.9 50 0.0017 29.3 4.7 54 290-361 20-73 (85)
26 2equ_A PHD finger protein 20-l 32.8 42 0.0014 28.7 4.1 39 290-342 8-46 (74)
27 1oey_A P67-PHOX, neutrophil cy 29.8 68 0.0023 28.2 5.0 64 692-764 6-70 (83)
28 2e63_A KIAA1787 protein; struc 28.5 36 0.0012 33.1 3.4 25 202-226 115-139 (170)
29 3o27_A Putative uncharacterize 26.0 53 0.0018 28.1 3.4 42 188-230 23-65 (68)
30 1g5v_A SurviVal motor neuron p 25.2 60 0.002 28.6 3.8 29 290-321 9-37 (88)
31 2k75_A Uncharacterized protein 21.5 1.3E+02 0.0044 26.6 5.4 46 164-229 39-88 (106)
32 3m7a_A Uncharacterized protein 20.7 79 0.0027 30.0 3.9 47 164-213 83-140 (140)
33 1e8p_A Endoglucanase, dockerin 20.1 33 0.0011 27.4 1.0 14 740-753 20-33 (46)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=5.9e-30 Score=239.24 Aligned_cols=114 Identities=29% Similarity=0.462 Sum_probs=105.2
Q ss_pred CCCCCceeEEEeecccCCCCCCceeeehhhhhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEcCCCCceeecccchh
Q 004105 119 PSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSV 198 (773)
Q Consensus 119 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~AE~~FPpLd~~~~~p~q~L~~~Dl~G~~W~FR~iyrg~prrhlLTtGWs~ 198 (773)
..+....+|+|+||+|||++++||+||+++||+|||.++..+.+++++|.++|.+|++|+|||+||+++++|+||+||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 45567889999999999999999999999999999999987777899999999999999999999999999999999999
Q ss_pred hhcccCCCCCCEEEEEEcc--CCcEEEEEEecCCCC
Q 004105 199 FVSAKRLVAGDSVLFIWNE--KNQLLLGIRRAIRPP 232 (773)
Q Consensus 199 FV~~KkL~aGDsVvF~R~~--~G~L~VGIRRa~r~~ 232 (773)
||++|+|++||+|+|+|.+ +++|+|++||+.++.
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 9999999999999999986 467999999998765
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.67 E-value=2.3e-16 Score=150.51 Aligned_cols=96 Identities=20% Similarity=0.294 Sum_probs=85.1
Q ss_pred ceeEEEeecccCCCCCCceeeehhhhhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEcCCCCceeecccchhhhccc
Q 004105 124 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 203 (773)
Q Consensus 124 ~~~F~K~LT~SDv~~~grfsVPk~~AE~~FPpLd~~~~~p~q~L~~~Dl~G~~W~FR~iyrg~prrhlLTtGWs~FV~~K 203 (773)
..+|.|+||+||+.+..++.||++.|+++||.. ...+.+.|. |+.|.|+|+|++. ++.|++||..||+++
T Consensus 46 ~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~-------~~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~dn 115 (146)
T 4i1k_A 46 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI-------SGFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLEN 115 (146)
T ss_dssp SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTC-------CSEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHHT
T ss_pred CCEEEEEECchhcCCCcEEEeCHHHHHHhCCCC-------CeEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHHc
Confidence 459999999999988778999999999999975 357888888 6999999999974 689999999999999
Q ss_pred CCCCCCEEEEEEccCC--cEEEEEEecC
Q 004105 204 RLVAGDSVLFIWNEKN--QLLLGIRRAI 229 (773)
Q Consensus 204 kL~aGDsVvF~R~~~G--~L~VGIRRa~ 229 (773)
+|++||.++|-..++. .+.|.|-|+.
T Consensus 116 ~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 116 NLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp TCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CCCCCCEEEEEEecCCceEEEEEEEecc
Confidence 9999999999998765 5788988875
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.43 E-value=4.8e-13 Score=119.91 Aligned_cols=94 Identities=21% Similarity=0.363 Sum_probs=80.6
Q ss_pred ceeEEEeecccCCCCCCceeeehhhhhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEcCCCCceeecccchhhhccc
Q 004105 124 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 203 (773)
Q Consensus 124 ~~~F~K~LT~SDv~~~grfsVPk~~AE~~FPpLd~~~~~p~q~L~~~Dl~G~~W~FR~iyrg~prrhlLTtGWs~FV~~K 203 (773)
...|.|+|+++|. ..++.||++.++.+.+.+ ...+.++|..|++|++++.+++ +++.|+.||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccC-------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 4589999999994 569999999998766543 3579999999999999999774 4789999999999999
Q ss_pred CCCCCCEEEEEEccCCcEEEEEEec
Q 004105 204 RLVAGDSVLFIWNEKNQLLLGIRRA 228 (773)
Q Consensus 204 kL~aGDsVvF~R~~~G~L~VGIRRa 228 (773)
+|++||.++|...++..+.|-|=|.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEEcCCCeEEEEEECC
Confidence 9999999999998888888877553
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=95.17 E-value=0.025 Score=62.03 Aligned_cols=92 Identities=24% Similarity=0.336 Sum_probs=65.9
Q ss_pred ceeEEEeecccCCCCCC----ceeeehhhhhhhCCCCC-CCCCCCceEEEE--EecCCCeEEEEEEEcC------CCCce
Q 004105 124 TNYFCKTLTASDTSTHG----GFSVPRRAAEKVFPSLD-FSLQPPAQELIA--RDLHDVEWKFRHIFRG------QPKRH 190 (773)
Q Consensus 124 ~~~F~K~LT~SDv~~~g----rfsVPk~~AE~~FPpLd-~~~~~p~q~L~~--~Dl~G~~W~FR~iyrg------~prrh 190 (773)
...|+|.|++.|++..| +|-+|+...+.+||.|+ .....|.+.+.+ -|...-++.++.+|.+ +...|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 57899999999999874 79999977999999998 334456555543 3444455599999997 34468
Q ss_pred eecccch-hhhcccCCCCCCEEEEEEc
Q 004105 191 LLTTGWS-VFVSAKRLVAGDSVLFIWN 216 (773)
Q Consensus 191 lLTtGWs-~FV~~KkL~aGDsVvF~R~ 216 (773)
.||. |. .+.=.....+||.++|-+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEEe
Confidence 8873 32 2333466788998888753
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=92.76 E-value=0.18 Score=44.91 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=42.7
Q ss_pred cEEEEeccccceeecccCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEeCCCCEEEec
Q 004105 692 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLG 754 (773)
Q Consensus 692 ~fVKV~m~G~iGRkiDL~~f~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD~EGD~mLVG 754 (773)
.=||++-.|.+ |-+.+..--+|++|.++|.++|++.. ...+++.|.|.|||+.-+-
T Consensus 7 vkvK~~~~gdi-~~~~v~~~i~~~~L~~kv~~~~~~~~------~~~f~lky~DEeGD~itis 62 (89)
T 1vd2_A 7 VRVKAYYRGDI-MITHFEPSISFEGLCNEVRDMCSFDN------EQLFTMKWIDEEGDPCTVS 62 (89)
T ss_dssp EEEEEESSSCE-EEEEECTTCCHHHHHHHHHHHTTCCS------SCCEEEEECCSSSCCEECC
T ss_pred EEEEEEeCCeE-EEEECCCCCCHHHHHHHHHHHhCCCC------CCeEEEEEECCCCCccccc
Confidence 56888888942 24444445699999999999999752 3468999999999986543
No 6
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=91.81 E-value=0.11 Score=48.34 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=42.3
Q ss_pred CcccEEEEeccc-----cceeecccC-----------CCCCHHHHHHHHHhhh-CCCCccCCCCCCccEEEEEeCCCCEE
Q 004105 689 PTRTFVKVYKSG-----SVGRSLDIS-----------RFSSYNELREELGQMF-GIEGKFEDPLRSGWQLVFVDRENDVL 751 (773)
Q Consensus 689 ~~~~fVKV~m~G-----~iGRkiDL~-----------~f~sY~eL~~~L~~MF-g~~g~l~d~~~s~~~lvYeD~EGD~m 751 (773)
..++=||++-.| .==|++-+. .-.+|++|+..+.++| ++.+ ..+++.|.|.|||.+
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~-------~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRP-------GGFQAHYRAERGDLV 90 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCS-------SCEEEEEECTTCCEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCC-------CcEEEEEECCCCCEE
Confidence 445789999875 112444433 2459999999999999 4432 369999999999987
Q ss_pred Eecc
Q 004105 752 LLGD 755 (773)
Q Consensus 752 LVGD 755 (773)
-+-.
T Consensus 91 tISs 94 (117)
T 2ktr_A 91 AFSS 94 (117)
T ss_dssp EECS
T ss_pred EecC
Confidence 6543
No 7
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=91.01 E-value=0.37 Score=42.82 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=43.4
Q ss_pred cEEEEecccccee-ecccCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEeCCCCEEEecc
Q 004105 692 TFVKVYKSGSVGR-SLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGD 755 (773)
Q Consensus 692 ~fVKV~m~G~iGR-kiDL~~f~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD~EGD~mLVGD 755 (773)
.=||.+-++.+=| ++|-+.-.+|++|...|+++|.+. ...+++.|.|.+||.+-+-+
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-------~~~f~i~Y~D~dGDLlpInn 64 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-------GLDVLLGYTDAHGDLLPLTN 64 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-------TCCCEEEEECTTSCEEECCS
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-------CCCEEEEEECCCCCEeeecC
Confidence 3466666665543 566667789999999999999863 24699999999999986543
No 8
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=89.95 E-value=0.23 Score=45.22 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=41.7
Q ss_pred cccEEEEeccc-----cceeecccCC-----------CCCHHHHHHHHHhhhC-CCCccCCCCCCccEEEEEeCCCCEEE
Q 004105 690 TRTFVKVYKSG-----SVGRSLDISR-----------FSSYNELREELGQMFG-IEGKFEDPLRSGWQLVFVDRENDVLL 752 (773)
Q Consensus 690 ~~~fVKV~m~G-----~iGRkiDL~~-----------f~sY~eL~~~L~~MFg-~~g~l~d~~~s~~~lvYeD~EGD~mL 752 (773)
.++=||+|-.| .-=|.+-+.. ..+|++|+..+.++|- +. ...+++.|.|.|||.+-
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~-------~~~f~l~Y~DedGDlIt 76 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALR-------PGGFQAHYRAERGDLVA 76 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-------SSCEEEEEECTTCCEEE
T ss_pred ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccC-------CCcEEEEEECCCCCEEE
Confidence 35668888865 1224444321 2489999999999995 33 23699999999999876
Q ss_pred ecc
Q 004105 753 LGD 755 (773)
Q Consensus 753 VGD 755 (773)
+.+
T Consensus 77 iSs 79 (102)
T 2kkc_A 77 FSS 79 (102)
T ss_dssp ECS
T ss_pred ecC
Confidence 654
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=82.94 E-value=1.6 Score=39.50 Aligned_cols=63 Identities=13% Similarity=0.251 Sum_probs=46.4
Q ss_pred cEEEEeccc-----cce--eecccCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEeCCCCEEEeccc
Q 004105 692 TFVKVYKSG-----SVG--RSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDD 756 (773)
Q Consensus 692 ~fVKV~m~G-----~iG--RkiDL~~f~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD~EGD~mLVGDv 756 (773)
.-|||+-.. +++ |.|=+..--+|++|...+.+-|++. .-++- ....+|-|+|.|||+..++++
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~-~~~~i-~~~~klkYkDEdGD~Vtl~sd 75 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT-HNNNI-SPITKIKYQDEDGDFVVLGSD 75 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH-CSSCC-CCCCCEEEECSSSCEEEECSH
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC-ccccc-cceeEEEEEcCCCCEEEEcCH
Confidence 567777552 244 7777788889999999999999975 11111 234799999999999887753
No 10
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=78.71 E-value=1.9 Score=37.38 Aligned_cols=47 Identities=13% Similarity=0.357 Sum_probs=34.9
Q ss_pred cCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEeCCCCEEEeccc
Q 004105 708 ISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDD 756 (773)
Q Consensus 708 L~~f~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD~EGD~mLVGDv 756 (773)
+..--+|++|...+.+-|++. . .+..+...+|-|+|.|||+...+++
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~-~-~~~~~~~~~lkYkDEdGD~Vti~sd 54 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNT-H-NNNISPITKIKYQDEDGDFVVLGSD 54 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTT-T-SSCSCSTTCCEEEETTTEEEECCST
T ss_pred eCCCCCHHHHHHHHHHHHccc-c-cccccceeEEEEEcCCCCEEEEcCH
Confidence 444568999999999999974 1 1111345799999999999877653
No 11
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=68.07 E-value=9.8 Score=33.90 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=41.5
Q ss_pred cEEEEeccc-cceeecccCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEeCCCCEEEe
Q 004105 692 TFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 753 (773)
Q Consensus 692 ~fVKV~m~G-~iGRkiDL~~f~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD~EGD~mLV 753 (773)
.=+||+-.| ..=--|.-..-.++++|...+..+||++ .+++.|.|.|||-.-|
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~---------~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS---------SEEEEEECTTSCEEEE
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC---------ceEEEEEcCCCCEEEE
Confidence 347888888 4333565555678999999999999985 4699999999997654
No 12
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=62.79 E-value=10 Score=34.59 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=42.3
Q ss_pred cEEEEeccc-cceeecccCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEeCCCCEEEe
Q 004105 692 TFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 753 (773)
Q Consensus 692 ~fVKV~m~G-~iGRkiDL~~f~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD~EGD~mLV 753 (773)
.=+||+-.| ..=--|.-..-.++++|...+..+||++ .+++.|.|.|||-.-|
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~---------~~~IkY~DEenD~V~i 68 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI 68 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS---------SBCCEEECTTSCEECC
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC---------ceEEEEecCCCCEEEE
Confidence 467999999 4333575555678999999999999985 3699999999997644
No 13
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=60.64 E-value=24 Score=34.24 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=63.1
Q ss_pred CCCCCEEEE-EEc--cCCcEEEEEEecCCCCCCCCCCc-ccCCccchhHHHHHHHHHhcCCcEEEEEecCCC------CC
Q 004105 205 LVAGDSVLF-IWN--EKNQLLLGIRRAIRPPTVMPSSV-LSSDSMHIGLLAAAAHAAATNSCFTVFFNPRAS------PS 274 (773)
Q Consensus 205 L~aGDsVvF-~R~--~~G~L~VGIRRa~r~~~~~pssv-~s~~sm~~gvlaaAa~aaa~~~~F~V~Y~PRas------~s 274 (773)
.+.||.|.+ |+. .+|+.+-.-+.. .|..+ +....+-.| +.+|......|..++|.--|-.. ..
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCSH-HHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 568898877 443 477766543211 12222 222223223 56677777788888887766432 23
Q ss_pred cceeehhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 004105 275 EFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (773)
Q Consensus 275 EFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEDss~rr~~GTI~gvsd 321 (773)
-+.||+..|-.. ..+.+||+|.+ ++++. + ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMGV---DELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTTS---SCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCcc---cCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 468898887432 36999999985 55553 3 6899999975
No 14
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=59.41 E-value=11 Score=37.60 Aligned_cols=102 Identities=22% Similarity=0.241 Sum_probs=62.9
Q ss_pred CCCCCEEEE-EE--ccCCcEEEEEEecCCCCCCCCCCcc-cCCccchhHHHHHHHHHhcCCcEEEEEecCC------CCC
Q 004105 205 LVAGDSVLF-IW--NEKNQLLLGIRRAIRPPTVMPSSVL-SSDSMHIGLLAAAAHAAATNSCFTVFFNPRA------SPS 274 (773)
Q Consensus 205 L~aGDsVvF-~R--~~~G~L~VGIRRa~r~~~~~pssv~-s~~sm~~gvlaaAa~aaa~~~~F~V~Y~PRa------s~s 274 (773)
.+.||.|.+ |+ ..+|+++-.-+.. .|..++ ....+-.| |.+|......|..++|.--|-. ...
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTT------SCCEEESSSSSSCHH-HHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCC------CCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 568999887 43 3477765543211 233322 22233223 4666666778888888766543 334
Q ss_pred cceeehhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 004105 275 EFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (773)
Q Consensus 275 EFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEDss~rr~~GTI~gvsd 321 (773)
-+.||+..|... ..+.+||+|.+ ++++- .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~~---~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMGV---DELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCCS---SCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCCc---cCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 578888876321 36999999974 55552 57899999975
No 15
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=58.22 E-value=26 Score=33.43 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=62.2
Q ss_pred CCCCCEEEE-EEc-cCCcEEEEEEecCCCCCCCCCCcccCCccchhHHHHHHHHHhcCCcEEEEEecCCC------CCcc
Q 004105 205 LVAGDSVLF-IWN-EKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRAS------PSEF 276 (773)
Q Consensus 205 L~aGDsVvF-~R~-~~G~L~VGIRRa~r~~~~~pssv~s~~sm~~gvlaaAa~aaa~~~~F~V~Y~PRas------~sEF 276 (773)
.+.||.|.+ |+. .+|+.+-.-+ . . -.+....+-.| +.+|......|..++|.--|... ..-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~-~-~-------f~~G~g~vipG-~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE-L-S-------YLHGHRNLIPG-LEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE-E-E-------EETTSSSSCHH-HHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE-E-E-------EEECCCCcChH-HHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 567888877 332 5777665433 0 0 01112222223 46677777788888888765432 2457
Q ss_pred eeehhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 004105 277 VIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (773)
Q Consensus 277 VVp~~kyvkA~~~~~ws~GMRFrM~fEtEDss~rr~~GTI~gvsd 321 (773)
.||+..|-+. ..|.+||+|.+ ++++. +...|+|+.|.+
T Consensus 73 ~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED---AEVVPGAQFYA--QDMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT---SCCCTTCEEEE--EETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC---CCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 8898887432 36999999985 45542 567899999975
No 16
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=56.01 E-value=45 Score=31.38 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=65.6
Q ss_pred ccCCCCCCEEEE-EE--cc-CCcEEEEEEecCCCCCCCCCCcc-cCCccchhHHHHHHHHHhcCCcEEEEEecCC-----
Q 004105 202 AKRLVAGDSVLF-IW--NE-KNQLLLGIRRAIRPPTVMPSSVL-SSDSMHIGLLAAAAHAAATNSCFTVFFNPRA----- 271 (773)
Q Consensus 202 ~KkL~aGDsVvF-~R--~~-~G~L~VGIRRa~r~~~~~pssv~-s~~sm~~gvlaaAa~aaa~~~~F~V~Y~PRa----- 271 (773)
.+..+.||.|.+ |+ .. +|+.+-.-+.. .|.... ....+-.| +.+|......|..++|.--|..
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~------~p~~f~~G~g~vipg-~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNISK------EPLEFIIGTNQIIAG-LEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTTT------CCEEEETTCCCSCHH-HHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCCC------cCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 455778999987 43 24 77765543210 232222 22223223 4667777778888888765533
Q ss_pred -CCCcceeehhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 004105 272 -SPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (773)
Q Consensus 272 -s~sEFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEDss~rr~~GTI~gvsd 321 (773)
...-+.||+..| . ...+.+||+|.+ ++++. ....|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~---~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E---GIELEKGMSVFG--QTEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T---TSCCCTTCEEEE--EETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C---CCCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 234578898887 2 247999999985 45553 567899999975
No 17
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=44.83 E-value=43 Score=32.48 Aligned_cols=105 Identities=13% Similarity=0.107 Sum_probs=66.1
Q ss_pred CCCCCCEEEE-EEc--cCCcEEEEEEecCCCCCCCCCCcc-cCCccchhHHHHHHHHHhcCCcEEEEEecCCCCCc----
Q 004105 204 RLVAGDSVLF-IWN--EKNQLLLGIRRAIRPPTVMPSSVL-SSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSE---- 275 (773)
Q Consensus 204 kL~aGDsVvF-~R~--~~G~L~VGIRRa~r~~~~~pssv~-s~~sm~~gvlaaAa~aaa~~~~F~V~Y~PRas~sE---- 275 (773)
....||.|.+ |+. .+|+++-.-+... .|.... ....+-. -+.+|......|..++|..-|...-.+
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~-----~P~~f~lG~g~vip-G~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNG-----KPALFRLGDASLSE-GLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHT-----SCEEEETTSSSSCH-HHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCC-----CCEEEEECCCCccH-HHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5678999988 443 5788665432111 122222 2222222 356777778888889988766543333
Q ss_pred --ceeehhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 004105 276 --FVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (773)
Q Consensus 276 --FVVp~~kyvkA~~~~~ws~GMRFrM~fEtEDss~rr~~GTI~gvsd 321 (773)
+.||++.|-.. ..+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMDA---GEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTTT---CCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCCc---CCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 67888887532 35899999976 55542 467899999985
No 18
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=43.59 E-value=32 Score=31.62 Aligned_cols=40 Identities=28% Similarity=0.280 Sum_probs=33.5
Q ss_pred ccCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEeCCCCEEEecc
Q 004105 707 DISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGD 755 (773)
Q Consensus 707 DL~~f~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD~EGD~mLVGD 755 (773)
||+.--+|++|..-..+-|.-+ +-.|-|.|.|||+.-+=|
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~---------DIaLNYrD~eGDLIrild 67 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE---------DIALNYRDAEGDLVRLLS 67 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS---------SEEEEEECTTSCEEECCS
T ss_pred ccccCCCHHHHHHHHHHHhccc---------ceeeeeecCCCCEEEEcc
Confidence 6677779999999999999843 469999999999986644
No 19
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=39.33 E-value=38 Score=28.69 Aligned_cols=53 Identities=9% Similarity=0.221 Sum_probs=39.7
Q ss_pred CCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCCCCCCCCCCcccccceeCC
Q 004105 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 360 (773)
Q Consensus 290 ~~ws~GMRFrM~fEtEDss~rr~~GTI~gvsd~Dp~rWp~S~WR~LqV~WDe~~~~~~~~RVSPWeIEpv~ 360 (773)
..|.+|+++-.++ ++ .++|-++|++|... ....|..++.. .+.|..=+|.|+.
T Consensus 5 ~~~~vGd~vmArW-~D---~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 5 SEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp CCCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cccccCCEEEEEc-CC---CCEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 5799999999999 33 38999999999852 45889999833 3556666665553
No 20
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=37.84 E-value=1.6e+02 Score=28.09 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=62.1
Q ss_pred CCCCCEEEE-EEcc-CCcEEEEEEec-----CCCC---CCCCCCc-ccCCccchhHHHHHHHHHhcCCcEEEEEecCCCC
Q 004105 205 LVAGDSVLF-IWNE-KNQLLLGIRRA-----IRPP---TVMPSSV-LSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASP 273 (773)
Q Consensus 205 L~aGDsVvF-~R~~-~G~L~VGIRRa-----~r~~---~~~pssv-~s~~sm~~gvlaaAa~aaa~~~~F~V~Y~PRas~ 273 (773)
.+.||.|.+ |+.. +|+++-.-+.. ..+. ...|..+ +....+-.| +.+|......|..++|.--|-..-
T Consensus 2 i~~Gd~V~v~Y~g~ldG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G-~eeaL~gm~~Ge~~~v~Ipp~~aY 80 (157)
T 3pr9_A 2 VEKGKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPG-LDEAILEMDVGEEREVVLPPEKAF 80 (157)
T ss_dssp CCTTCEEEEEEEEEETTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHH-HHHHHHHCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEECCEEEEeccccccccccccccccCCCCEEEEECCCcHHHH-HHHHHcCCCCCCEEEEEECcHHhc
Confidence 357888887 3321 77766543321 0000 0123332 222223233 577888888999999886554322
Q ss_pred ------CcceeehhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 004105 274 ------SEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (773)
Q Consensus 274 ------sEFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEDss~rr~~GTI~gvsd 321 (773)
.=..||++.|.+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 81 G~~~~~~V~~v~~~~f~~~--~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 81 GKRDPSKIKLIPLSEFTKR--GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp CCCCGGGEEEEEHHHHHHT--TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred CCCChHhEEEcCHHHCCcc--cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 2367898887654 235889999975 332 589999975
No 21
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=34.03 E-value=35 Score=26.69 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=22.3
Q ss_pred CCccccEEEEeeeccccccceeeEEEEEecc
Q 004105 291 RVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (773)
Q Consensus 291 ~ws~GMRFrM~fEtEDss~rr~~GTI~gvsd 321 (773)
.|.+|+.+-..|..|. .||.++|.+|..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4899999999995444 899999999963
No 22
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=33.54 E-value=41 Score=26.91 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.5
Q ss_pred CCccccEEEEeeeccccccceeeEEEEEecc
Q 004105 291 RVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (773)
Q Consensus 291 ~ws~GMRFrM~fEtEDss~rr~~GTI~gvsd 321 (773)
.|.+|+.+-..|..+. .||.++|+++..
T Consensus 3 ~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDG---CIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTTTS---CEEEEEEEEEET
T ss_pred cCCcCCEEEEEECCCC---CEEEEEEEEEcC
Confidence 6999999999995333 899999999964
No 23
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=33.19 E-value=39 Score=27.58 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=30.7
Q ss_pred CCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCCC
Q 004105 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDEST 343 (773)
Q Consensus 290 ~~ws~GMRFrM~fEtEDss~rr~~GTI~gvsd~Dp~rWp~S~WR~LqV~WDe~~ 343 (773)
..|.+|+.+.-.|..+. .||.++|.+|.... ....|...+-.
T Consensus 7 ~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~---------~~~~V~fvdYG 48 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN---------GTAAITFAGYG 48 (64)
T ss_dssp SCCCTTCEEEEECTTTS---SEEEEEEEEEETTT---------TEEEEEETTTT
T ss_pred CCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC---------CEEEEEEEecC
Confidence 47999999999995443 89999999997421 23567666543
No 24
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=33.13 E-value=40 Score=31.00 Aligned_cols=73 Identities=30% Similarity=0.326 Sum_probs=43.8
Q ss_pred CcceeehhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCCCCCCCCCCccc
Q 004105 274 SEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSL 353 (773)
Q Consensus 274 sEFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEDss~rr~~GTI~gvsd~Dp~rWp~S~WR~LqV~WDe~~~~~~~~RVSP 353 (773)
++|-=. +.|..-+. .++.+|||+||.=.-|+-+. -=.|++. ++. + +-+ .+||.|..... .-.|+-
T Consensus 6 sdF~s~-~~Ya~YVr-~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~-----Gl~--~vQv~W~~~G~---TyWV~~ 70 (105)
T 2jng_A 6 SEFASG-NTYALYVR-DTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-N-----GVP--PVQVFWESTGR---TYWVHW 70 (105)
T ss_dssp GGSSSS-HHHHHHHH-HHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-T-----TSS--EEEEEETTTTE---EEEEEG
T ss_pred hhcccc-hhHHHHHH-hcCCCccEEeeehhhhhhcc-CCceeEE-ecC-C-----CCc--cceeeehhcCc---eEEEEe
Confidence 355332 45555555 46999999999632233221 2378888 442 2 122 89999996652 355666
Q ss_pred ccceeCCC
Q 004105 354 WEIEPLTT 361 (773)
Q Consensus 354 WeIEpv~~ 361 (773)
=.||.+..
T Consensus 71 ~~~Ellg~ 78 (105)
T 2jng_A 71 HMLEILGF 78 (105)
T ss_dssp GGEEECCC
T ss_pred ehhhhcCC
Confidence 67777754
No 25
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=32.94 E-value=50 Score=29.28 Aligned_cols=54 Identities=9% Similarity=0.199 Sum_probs=39.8
Q ss_pred CCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCCCCCCCCCCcccccceeCCC
Q 004105 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTT 361 (773)
Q Consensus 290 ~~ws~GMRFrM~fEtEDss~rr~~GTI~gvsd~Dp~rWp~S~WR~LqV~WDe~~~~~~~~RVSPWeIEpv~~ 361 (773)
..|.+|+++-..+ ++- ++|-++|++|... ....|.+++.. .+.|.+=+|.|+..
T Consensus 20 ~~f~vGd~VlArW-~D~---~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~~ 73 (85)
T 3qii_A 20 SEFQINEQVLACW-SDC---RFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFSK 73 (85)
T ss_dssp -CCCTTCEEEEEC-TTS---CEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred cccccCCEEEEEe-CCC---CEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccCCh
Confidence 4799999999999 433 8999999999852 35899999843 35566666666543
No 26
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.84 E-value=42 Score=28.69 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=31.1
Q ss_pred CCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCC
Q 004105 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDES 342 (773)
Q Consensus 290 ~~ws~GMRFrM~fEtEDss~rr~~GTI~gvsd~Dp~rWp~S~WR~LqV~WDe~ 342 (773)
..|.+|+++.-.|. |. .||-+||++|.+ + ....|..++-
T Consensus 8 ~~~kvGd~clA~ws-Dg---~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DC---RYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS-SS---SEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCEEEEECC-CC---CEEEEEEEEECC-------C---CEEEEEEecC
Confidence 57999999999996 33 899999999963 1 3567888765
No 27
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=29.79 E-value=68 Score=28.15 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=48.5
Q ss_pred cEEEEeccccceeecccCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEe-CCCCEEEecccCcCccccC
Q 004105 692 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVD-RENDVLLLGDDPWEFRSSR 764 (773)
Q Consensus 692 ~fVKV~m~G~iGRkiDL~~f~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD-~EGD~mLVGDvPWe~Fv~~ 764 (773)
.=|||+-. +--.|.+..=-+|.+|++.|.+-+++.+. .=+|-|.| .+|.+++.+|.=++.-..+
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~-------~~~LsYk~~~s~~~vi~~d~dl~~aw~~ 70 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLE-------HTKLSYRPRDSNELVPLSEDSMKDAWGQ 70 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGG-------GCCEEECCTTCSSCEECCTTTHHHHHTT
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcc-------eeEEEeeCCCCCCeeccChHHHHHHHHh
Confidence 45777777 77778888888999999999999987531 34888988 5777778888766654443
No 28
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.51 E-value=36 Score=33.09 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.7
Q ss_pred ccCCCCCCEEEEEEccCCcEEEEEE
Q 004105 202 AKRLVAGDSVLFIWNEKNQLLLGIR 226 (773)
Q Consensus 202 ~KkL~aGDsVvF~R~~~G~L~VGIR 226 (773)
-..|.+||.|-|+++.+|+|++.|-
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEES
T ss_pred ccccCCCCEEEEEEcCCcEEEEEEC
Confidence 3467899999999999999999873
No 29
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=25.99 E-value=53 Score=28.09 Aligned_cols=42 Identities=12% Similarity=0.205 Sum_probs=32.1
Q ss_pred CceeecccchhhhcccCCCCCCEEEEEEc-cCCcEEEEEEecCC
Q 004105 188 KRHLLTTGWSVFVSAKRLVAGDSVLFIWN-EKNQLLLGIRRAIR 230 (773)
Q Consensus 188 rrhlLTtGWs~FV~~KkL~aGDsVvF~R~-~~G~L~VGIRRa~r 230 (773)
..|.||== .+++++-++..||.+...=+ .+|++.++.+|-++
T Consensus 23 etyYInIP-aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk 65 (68)
T 3o27_A 23 TTFYLLIP-KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKE 65 (68)
T ss_dssp CCEEEEEC-HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGG
T ss_pred eEEEEeCc-HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhh
Confidence 33545322 48999999999999998765 58889999999543
No 30
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=25.24 E-value=60 Score=28.56 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.3
Q ss_pred CCCccccEEEEeeeccccccceeeEEEEEecc
Q 004105 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (773)
Q Consensus 290 ~~ws~GMRFrM~fEtEDss~rr~~GTI~gvsd 321 (773)
..|.+|+.+.-.|..+. .||.++|.+|..
T Consensus 9 ~~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~ 37 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDG---CIYPATIASIDF 37 (88)
T ss_dssp CCCCSSCEEEEECTTTC---CEEEEEEEEEET
T ss_pred CCCCCCCEEEEEECCCC---CEEEEEEEEecC
Confidence 47999999999994333 899999999964
No 31
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=21.53 E-value=1.3e+02 Score=26.65 Aligned_cols=46 Identities=17% Similarity=0.037 Sum_probs=34.3
Q ss_pred ceEEEEEecCCCeEEEEEEEcCCCCceeecccchhhhcccCCCCCCEEEEEEc----cCCcEEEEEEecC
Q 004105 164 AQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN----EKNQLLLGIRRAI 229 (773)
Q Consensus 164 ~q~L~~~Dl~G~~W~FR~iyrg~prrhlLTtGWs~FV~~KkL~aGDsVvF~R~----~~G~L~VGIRRa~ 229 (773)
-..+.+.|..| +.+++.|+.. |.+||.|.+... -+|++.|-+-|..
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 35799999999 5777888643 889999998743 2787777776543
No 32
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=20.73 E-value=79 Score=30.00 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=33.0
Q ss_pred ceEEEEEecCCCeEEEEEEE---------cCCCCceee--cccchhhhcccCCCCCCEEEE
Q 004105 164 AQELIARDLHDVEWKFRHIF---------RGQPKRHLL--TTGWSVFVSAKRLVAGDSVLF 213 (773)
Q Consensus 164 ~q~L~~~Dl~G~~W~FR~iy---------rg~prrhlL--TtGWs~FV~~KkL~aGDsVvF 213 (773)
..++.+.|..|++=....-- ...+-+|+| ..||.. +.++++||.|.|
T Consensus 83 PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~~~---~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLAA---RLGIKPGDKVEW 140 (140)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTHHH---HHTCCTTCEEEC
T ss_pred ceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcChHH---HcCCCCCCEEeC
Confidence 45688888888776665311 112346898 688765 889999999975
No 33
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=20.10 E-value=33 Score=27.39 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=11.8
Q ss_pred EEEEEeCCCCEEEe
Q 004105 740 QLVFVDRENDVLLL 753 (773)
Q Consensus 740 ~lvYeD~EGD~mLV 753 (773)
.++|+|.+|||-.-
T Consensus 20 ~V~YtD~dG~WGVe 33 (46)
T 1e8p_A 20 KVEYTDASGQWGVQ 33 (46)
T ss_dssp CEEEEETTEEEEEE
T ss_pred eEEEEcCCCccccC
Confidence 59999999999543
Done!