Query 004106
Match_columns 773
No_of_seqs 283 out of 617
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 14:28:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 1.8E-28 6.1E-33 229.3 15.4 113 156-268 9-123 (130)
2 4i1k_A B3 domain-containing tr 99.7 2.8E-17 9.5E-22 156.9 13.0 98 157-264 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 3.2E-14 1.1E-18 127.6 11.7 94 158-262 8-101 (104)
4 1na6_A Ecorii, restriction end 92.8 0.2 6.7E-06 55.1 7.7 92 158-250 18-123 (404)
5 3cgm_A SLYD, peptidyl-prolyl C 43.5 59 0.002 31.0 7.5 84 239-334 3-94 (158)
6 3o27_A Putative uncharacterize 33.8 35 0.0012 29.2 3.6 35 231-265 31-66 (68)
7 2kfw_A FKBP-type peptidyl-prol 31.2 63 0.0021 32.0 5.7 89 238-334 2-99 (196)
8 2jng_A Cullin-7, CUL-7; P53 bi 27.8 20 0.00069 32.9 1.3 70 313-418 10-79 (105)
9 2k8i_A SLYD, peptidyl-prolyl C 27.3 2.4E+02 0.0081 27.2 8.9 88 239-334 3-99 (171)
10 2e63_A KIAA1787 protein; struc 25.4 40 0.0014 32.8 3.0 24 236-259 115-138 (170)
11 3m7a_A Uncharacterized protein 24.7 69 0.0023 30.4 4.4 46 199-247 84-140 (140)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=1.8e-28 Score=229.31 Aligned_cols=113 Identities=31% Similarity=0.501 Sum_probs=104.0
Q ss_pred CCceeEEEecccccCCCCCceeeehhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCcceEeccchhhhhh
Q 004106 156 STPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVN 235 (773)
Q Consensus 156 ~~~~~F~K~LT~SDV~~~GrfsVPk~~Ae~~FPpLd~~~~~p~q~L~~kDl~G~~W~FR~~yrg~prrhlLTtGWs~FVr 235 (773)
+..++|+|+||+|||+++++|+||+++|+.|||+++..+..+.++|.++|.+|++|+|||+||+++++|+|++||+.||+
T Consensus 9 ~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV~ 88 (130)
T 1wid_A 9 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVK 88 (130)
T ss_dssp CCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHH
T ss_pred CCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHHH
Confidence 45679999999999999999999999999999999876667889999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEEEecCC--CcEEEEEEEcCCCCCC
Q 004106 236 KKKLVSGDAVLFLRGED--GELRLGIRRAPHVKSG 268 (773)
Q Consensus 236 ~KkL~aGDsVvF~R~en--GeL~VGIRRa~~~~~~ 268 (773)
+|+|++||+|+|++.++ +.|+|++||+......
T Consensus 89 ~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~~~ 123 (130)
T 1wid_A 89 EKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLD 123 (130)
T ss_dssp HTTCCTTCEEEEEECCSSSCCEEEEEECCCSCSSC
T ss_pred HcCCCCCCEEEEEEecCCCcEEEEEEEECCCCCcc
Confidence 99999999999999864 5799999999876543
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.72 E-value=2.8e-17 Score=156.90 Aligned_cols=98 Identities=20% Similarity=0.280 Sum_probs=86.4
Q ss_pred CceeEEEecccccCCCCCceeeehhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCcceEeccchhhhhhc
Q 004106 157 TPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNK 236 (773)
Q Consensus 157 ~~~~F~K~LT~SDV~~~GrfsVPk~~Ae~~FPpLd~~~~~p~q~L~~kDl~G~~W~FR~~yrg~prrhlLTtGWs~FVr~ 236 (773)
..++|.|+||+||+.+...|.||+++++.+||..+ ..+.++|. |+.|+|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 44699999999999887789999999999999753 46788887 6999999999974 68999999999999
Q ss_pred cCCCCCCEEEEEecCCC--cEEEEEEEcCC
Q 004106 237 KKLVSGDAVLFLRGEDG--ELRLGIRRAPH 264 (773)
Q Consensus 237 KkL~aGDsVvF~R~enG--eL~VGIRRa~~ 264 (773)
++|++||+|+|...++. .|.|.|.|+..
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred cCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 99999999999998765 69999999864
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.54 E-value=3.2e-14 Score=127.56 Aligned_cols=94 Identities=23% Similarity=0.394 Sum_probs=82.1
Q ss_pred ceeEEEecccccCCCCCceeeehhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCcceEeccchhhhhhcc
Q 004106 158 PHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKK 237 (773)
Q Consensus 158 ~~~F~K~LT~SDV~~~GrfsVPk~~Ae~~FPpLd~~~~~p~q~L~~kDl~G~~W~FR~~yrg~prrhlLTtGWs~FVr~K 237 (773)
-+.|.|+|+++|. ..+|.||+++++.+.+.+. ..+.++|..|+.|++++.+++ ++..|+.||.+||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 3589999999993 4599999999988665432 368889999999999999874 4689999999999999
Q ss_pred CCCCCCEEEEEecCCCcEEEEEEEc
Q 004106 238 KLVSGDAVLFLRGEDGELRLGIRRA 262 (773)
Q Consensus 238 kL~aGDsVvF~R~enGeL~VGIRRa 262 (773)
+|++||.|+|....+..+.|-|-+.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEEcCCCeEEEEEECC
Confidence 9999999999999999999999875
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=92.78 E-value=0.2 Score=55.11 Aligned_cols=92 Identities=23% Similarity=0.323 Sum_probs=66.6
Q ss_pred ceeEEEecccccCCCC----CceeeehhhhhhcCCCCCCC-CCCCceEEEEE--eCCCCeEEEEEEEeC------CCcce
Q 004106 158 PHMFCKTLTASDTSTH----GGFSVPRRAAEDCFPPLDYS-QQRPSQELVAK--DLHGLEWRFRHIYRG------QPRRH 224 (773)
Q Consensus 158 ~~~F~K~LT~SDV~~~----GrfsVPk~~Ae~~FPpLd~~-~~~p~q~L~~k--Dl~G~~W~FR~~yrg------~prrh 224 (773)
-+.|+|.|++-|++.. ++|.+|+.....+||.|+.. +.++.+.+.+. |...-++.++.+|.+ +...|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 4699999999999876 48999998899999998843 34565555543 443455599999986 44568
Q ss_pred Eeccchh-hhhhccCCCCCCEEEEEec
Q 004106 225 LLTTGWS-AFVNKKKLVSGDAVLFLRG 250 (773)
Q Consensus 225 lLTtGWs-~FVr~KkL~aGDsVvF~R~ 250 (773)
.||. |- .+.=.+...+||.++|-+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEEe
Confidence 8873 32 2344477788999888744
No 5
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=43.47 E-value=59 Score=31.00 Aligned_cols=84 Identities=12% Similarity=0.153 Sum_probs=50.8
Q ss_pred CCCCCEEEEE-ec-CCCcEEEEEEEcCCCCCCCCCCcccCCCCCCccHHHHHHHHHhCCeEEEEEecCC------CCCce
Q 004106 239 LVSGDAVLFL-RG-EDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFSISYNPRA------SASEF 310 (773)
Q Consensus 239 L~aGDsVvF~-R~-enGeL~VGIRRa~~~~~~~~~~~~~~~~~~~~~la~a~~a~~~~~~F~V~Y~Pra------~~seF 310 (773)
.+.||.|.+. .. .+|+.+-.-+ . .+.. ...++ ..-+.+|..-...|..++|.--|-. ...-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--~------~f~~-G~g~v-ipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--L------SYLH-GHRNL-IPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--E------EEET-TSSSS-CHHHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--E------EEEE-CCCCc-ChHHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 5688988773 22 6777655433 1 1111 11111 2345566665677888888765532 23557
Q ss_pred eeehhHHHhhccCCcccCcEEEEE
Q 004106 311 IIPVNKFLKSLDHSFAVGMRFKMR 334 (773)
Q Consensus 311 IV~~~ky~~a~~~~w~~GmRfkM~ 334 (773)
.|+++.|... ..|.+||+|.+.
T Consensus 73 ~v~~~~f~~~--~~~~~G~~~~~~ 94 (158)
T 3cgm_A 73 VVPLSAFPED--AEVVPGAQFYAQ 94 (158)
T ss_dssp EEEGGGSCTT--SCCCTTCEEEEE
T ss_pred EEEHHHCCCC--CCCccCCEEEEE
Confidence 8999888643 579999999865
No 6
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=33.84 E-value=35 Score=29.15 Aligned_cols=35 Identities=14% Similarity=0.334 Sum_probs=30.2
Q ss_pred hhhhhccCCCCCCEEEEEec-CCCcEEEEEEEcCCC
Q 004106 231 SAFVNKKKLVSGDAVLFLRG-EDGELRLGIRRAPHV 265 (773)
Q Consensus 231 s~FVr~KkL~aGDsVvF~R~-enGeL~VGIRRa~~~ 265 (773)
.++++.-+|+.||.+...-+ .||++.++.+|-++.
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk~ 66 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKEL 66 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhhc
Confidence 48999999999999999876 589999999996543
No 7
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=31.21 E-value=63 Score=32.04 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=51.1
Q ss_pred CCCCCCEEEEE-e--cCCCcEEEEEEEcCCCCCCCCCCcccCCCCCCccHHHHHHHHHhCCeEEEEEecC------CCCC
Q 004106 238 KLVSGDAVLFL-R--GEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFSISYNPR------ASAS 308 (773)
Q Consensus 238 kL~aGDsVvF~-R--~enGeL~VGIRRa~~~~~~~~~~~~~~~~~~~~~la~a~~a~~~~~~F~V~Y~Pr------a~~s 308 (773)
..+.||.|.+. . .++|+++-.-+.. .|....-....-..-+.+|+.-...+..++|..-|- ....
T Consensus 2 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 2 KVAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCCSSCEEEEEEEEEETTTEEEEECCTT------SCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCCEEEEEEEEEECCCCEEEecCCC------CCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 36789998873 3 3578765433210 122211111112334555555556777788876554 3335
Q ss_pred ceeeehhHHHhhccCCcccCcEEEEE
Q 004106 309 EFIIPVNKFLKSLDHSFAVGMRFKMR 334 (773)
Q Consensus 309 eFIV~~~ky~~a~~~~w~~GmRfkM~ 334 (773)
-+.||++.|.. ...+.+||+|.+.
T Consensus 76 V~~vp~~~f~~--~~~~~~G~~~~~~ 99 (196)
T 2kfw_A 76 VQRVPKDVFMG--VDELQVGMRFLAE 99 (196)
T ss_dssp CEEECGGGCCC--SSCCCTTCEEEEE
T ss_pred EEEEEHHHCCC--ccCcccCCEEEEE
Confidence 57889988853 2469999999754
No 8
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=27.81 E-value=20 Score=32.91 Aligned_cols=70 Identities=21% Similarity=0.206 Sum_probs=44.3
Q ss_pred ehhHHHhhccCCcccCcEEEEEEecchhhhhhhhhhHHHhhcccccccccccCCCceEEEEEeeecCCCCCCCCCCceee
Q 004106 313 PVNKFLKSLDHSFAVGMRFKMRFETDDAAERRFNIFELVALNSKHYIESYSSLNDRYTGVIMGVGDVDPVRWPGSKWRCL 392 (773)
Q Consensus 313 ~~~ky~~a~~~~w~~GmRfkM~fe~eds~e~r~~~~e~~~~~~~~~~~~~~~~~~w~~GtI~gv~~~dp~~wp~S~WR~L 392 (773)
..+.|-.=+..+..+|||+||. +|..|.+- .=.|.+. ++ .+- -| ..
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~---~dyeev~~----------------------GD~G~vl-~s-~~G--l~-----~v 55 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRML---DDYEEISA----------------------GDEGEFR-QS-NNG--VP-----PV 55 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEEC---SCBTTBCT----------------------TCEEEEE-EE-CTT--SS-----EE
T ss_pred cchhHHHHHHhcCCCccEEeee---hhhhhhcc----------------------CCceeEE-ec-CCC--Cc-----cc
Confidence 4567888888899999999995 33334441 1268887 33 222 22 89
Q ss_pred EEeecCCCCCCCCCccccccccCCCC
Q 004106 393 LVRWDDVESNRHTRVSPWEIEPSGSV 418 (773)
Q Consensus 393 ~V~WDe~~~~~~~RVSPWeIEp~~~~ 418 (773)
||.|.....- -.|.-=.||.++..
T Consensus 56 Qv~W~~~G~T--yWV~~~~~Ellg~~ 79 (105)
T 2jng_A 56 QVFWESTGRT--YWVHWHMLEILGFE 79 (105)
T ss_dssp EEEETTTTEE--EEEEGGGEEECCCC
T ss_pred eeeehhcCce--EEEEeehhhhcCCc
Confidence 9999974431 14555566766653
No 9
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=27.35 E-value=2.4e+02 Score=27.17 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=52.3
Q ss_pred CCCCCEEEEE-e--cCCCcEEEEEEEcCCCCCCCCCCcccCCCCCCccHHHHHHHHHhCCeEEEEEecCC------CCCc
Q 004106 239 LVSGDAVLFL-R--GEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFSISYNPRA------SASE 309 (773)
Q Consensus 239 L~aGDsVvF~-R--~enGeL~VGIRRa~~~~~~~~~~~~~~~~~~~~~la~a~~a~~~~~~F~V~Y~Pra------~~se 309 (773)
.+.||.|.+. . ..+|+.+-.-+.. .|....-....-..-+.+|+.-...|..++|..-|-. ...-
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~v 76 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLV 76 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCCTTSE
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCChhhE
Confidence 5789998873 3 3578765443211 1221111111123446666666677888887766543 2244
Q ss_pred eeeehhHHHhhccCCcccCcEEEEE
Q 004106 310 FIIPVNKFLKSLDHSFAVGMRFKMR 334 (773)
Q Consensus 310 FIV~~~ky~~a~~~~w~~GmRfkM~ 334 (773)
+.||++.|.. ...+.+||+|.+.
T Consensus 77 ~~v~~~~f~~--~~~~~~G~~~~~~ 99 (171)
T 2k8i_A 77 QRVPKDVFMG--VDELQVGMRFLAE 99 (171)
T ss_dssp EEEEGGGGTT--SSCCCTTCEEEEE
T ss_pred EEeeHHHCCc--ccCccCCcEEEEE
Confidence 7899998864 2479999999864
No 10
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.39 E-value=40 Score=32.82 Aligned_cols=24 Identities=42% Similarity=0.434 Sum_probs=21.4
Q ss_pred ccCCCCCCEEEEEecCCCcEEEEE
Q 004106 236 KKKLVSGDAVLFLRGEDGELRLGI 259 (773)
Q Consensus 236 ~KkL~aGDsVvF~R~enGeL~VGI 259 (773)
-..|.+||.|-|++..+|+|++.|
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~i 138 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWV 138 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEE
T ss_pred ccccCCCCEEEEEEcCCcEEEEEE
Confidence 345789999999999999999987
No 11
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=24.66 E-value=69 Score=30.40 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=32.7
Q ss_pred eEEEEEeCCCCeEEEEEEEe---------CCCcceEe--ccchhhhhhccCCCCCCEEEE
Q 004106 199 QELVAKDLHGLEWRFRHIYR---------GQPRRHLL--TTGWSAFVNKKKLVSGDAVLF 247 (773)
Q Consensus 199 q~L~~kDl~G~~W~FR~~yr---------g~prrhlL--TtGWs~FVr~KkL~aGDsVvF 247 (773)
.++.+.|..|++=....--. ..+-+|+| ..|| +.+.++++||.|.|
T Consensus 84 LDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 84 LDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGL---AARLGIKPGDKVEW 140 (140)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTH---HHHHTCCTTCEEEC
T ss_pred eEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcCh---HHHcCCCCCCEEeC
Confidence 56788888888776653211 12346887 6887 68899999999975
Done!