Query 004108
Match_columns 773
No_of_seqs 335 out of 2364
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 17:41:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046 Puromycin-sensitive am 100.0 3E-142 6E-147 1255.4 74.2 748 4-772 25-780 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 2E-119 3E-124 1065.2 75.6 710 13-771 13-738 (831)
3 COG0308 PepN Aminopeptidase N 100.0 7.8E-90 1.7E-94 811.3 63.6 729 9-771 12-763 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 6.1E-85 1.3E-89 758.6 71.1 707 11-763 4-766 (863)
5 PRK14015 pepN aminopeptidase N 100.0 3.6E-84 7.9E-89 754.6 72.8 710 11-763 16-776 (875)
6 TIGR02411 leuko_A4_hydro leuko 100.0 1.6E-77 3.4E-82 680.1 40.9 426 9-464 6-452 (601)
7 PF01433 Peptidase_M1: Peptida 100.0 2.5E-75 5.3E-80 644.5 37.1 385 9-395 1-390 (390)
8 KOG1047 Bifunctional leukotrie 100.0 1.6E-54 3.4E-59 452.5 27.8 431 11-462 13-459 (613)
9 PF11838 ERAP1_C: ERAP1-like C 100.0 1.3E-40 2.9E-45 358.3 23.8 235 532-771 1-239 (324)
10 KOG1932 TATA binding protein a 100.0 2.6E-35 5.7E-40 329.7 31.9 428 16-465 27-506 (1180)
11 COG3975 Predicted protease wit 99.3 1E-10 2.2E-15 124.4 20.3 303 158-475 115-447 (558)
12 PF13485 Peptidase_MA_2: Pepti 99.2 4.4E-11 9.5E-16 109.7 7.3 106 299-418 23-128 (128)
13 PF10460 Peptidase_M30: Peptid 97.7 0.0019 4.1E-08 68.4 18.2 222 216-455 16-285 (366)
14 PF05299 Peptidase_M61: M61 gl 97.1 0.00037 8.1E-09 61.9 2.8 44 301-344 4-58 (122)
15 PF11940 DUF3458: Domain of un 96.9 0.12 2.7E-06 55.6 20.4 273 468-763 6-312 (367)
16 PF07607 DUF1570: Protein of u 96.1 0.0032 6.9E-08 56.6 2.2 38 303-341 3-43 (128)
17 PF04450 BSP: Peptidase of pla 95.9 0.2 4.3E-06 49.3 13.8 171 236-450 26-204 (205)
18 PF10026 DUF2268: Predicted Zn 92.6 0.47 1E-05 46.6 8.0 99 240-345 5-113 (195)
19 smart00638 LPD_N Lipoprotein N 92.1 2.5 5.5E-05 49.2 14.8 197 550-763 357-560 (574)
20 PRK04860 hypothetical protein; 88.9 1 2.2E-05 42.5 6.1 70 236-314 5-76 (160)
21 COG4324 Predicted aminopeptida 86.6 0.68 1.5E-05 45.9 3.5 40 299-344 195-234 (376)
22 PF01863 DUF45: Protein of unk 85.9 4.3 9.3E-05 40.1 9.1 93 235-354 109-201 (205)
23 PF10023 DUF2265: Predicted am 83.2 1.1 2.4E-05 47.1 3.5 39 300-344 164-202 (337)
24 PF01347 Vitellogenin_N: Lipop 81.6 17 0.00036 42.9 13.1 195 551-762 396-603 (618)
25 smart00731 SprT SprT homologue 80.7 1.5 3.2E-05 40.9 3.1 64 243-315 6-73 (146)
26 PF12725 DUF3810: Protein of u 75.2 3 6.5E-05 44.3 3.8 32 301-344 196-227 (318)
27 PF01447 Peptidase_M4: Thermol 73.1 6.8 0.00015 36.6 5.2 77 231-312 67-146 (150)
28 PF13646 HEAT_2: HEAT repeats; 71.2 9.4 0.0002 31.5 5.3 75 659-745 14-88 (88)
29 PF12315 DUF3633: Protein of u 61.7 13 0.00027 36.3 4.6 41 301-343 93-133 (212)
30 PF03272 Enhancin: Viral enhan 58.1 1.2E+02 0.0027 36.4 12.9 129 303-451 238-377 (775)
31 PF10989 DUF2808: Protein of u 57.3 33 0.00072 31.9 6.5 47 73-120 76-122 (146)
32 PF01435 Peptidase_M48: Peptid 56.9 8.2 0.00018 38.6 2.7 71 243-320 36-108 (226)
33 COG3227 LasB Zinc metalloprote 56.8 12 0.00025 41.1 3.8 111 227-344 265-381 (507)
34 PF06114 DUF955: Domain of unk 56.5 11 0.00025 33.0 3.3 18 301-318 42-59 (122)
35 COG0362 Gnd 6-phosphogluconate 53.4 96 0.0021 33.6 9.7 118 566-704 312-444 (473)
36 PRK04351 hypothetical protein; 53.1 16 0.00034 34.1 3.6 16 298-313 58-73 (149)
37 COG1451 Predicted metal-depend 52.9 94 0.002 31.2 9.3 93 234-353 119-211 (223)
38 COG4783 Putative Zn-dependent 52.6 17 0.00038 39.9 4.3 55 256-315 90-144 (484)
39 PF04234 CopC: CopC domain; I 51.6 75 0.0016 27.1 7.4 62 45-109 18-82 (97)
40 COG2719 SpoVR Uncharacterized 50.5 1E+02 0.0022 33.6 9.3 33 327-359 269-301 (495)
41 PF10263 SprT-like: SprT-like 49.8 12 0.00026 35.1 2.4 18 298-315 57-74 (157)
42 COG0501 HtpX Zn-dependent prot 49.4 26 0.00056 36.9 5.1 68 244-319 105-175 (302)
43 PRK05457 heat shock protein Ht 48.7 34 0.00073 35.8 5.7 68 240-316 79-149 (284)
44 PRK04897 heat shock protein Ht 45.4 44 0.00095 35.2 6.0 68 240-316 82-152 (298)
45 PRK09687 putative lyase; Provi 45.4 3.8E+02 0.0081 27.9 16.3 90 660-760 143-232 (280)
46 PRK03982 heat shock protein Ht 45.2 51 0.0011 34.5 6.5 66 240-316 70-140 (288)
47 PF14675 FANCI_S1: FANCI solen 43.7 63 0.0014 32.3 6.4 118 568-687 4-122 (223)
48 PF08325 WLM: WLM domain; Int 43.1 17 0.00037 35.3 2.3 22 296-317 77-98 (186)
49 PRK02870 heat shock protein Ht 43.1 49 0.0011 35.5 5.9 63 242-312 119-184 (336)
50 PRK01345 heat shock protein Ht 42.8 54 0.0012 34.9 6.2 68 240-316 69-139 (317)
51 PHA02456 zinc metallopeptidase 40.9 18 0.0004 31.0 1.8 15 300-314 78-92 (141)
52 cd04269 ZnMc_adamalysin_II_lik 40.0 97 0.0021 30.1 7.2 14 300-313 130-143 (194)
53 PF13574 Reprolysin_2: Metallo 39.0 20 0.00043 34.4 2.0 13 301-313 111-123 (173)
54 PRK03072 heat shock protein Ht 38.9 61 0.0013 34.0 5.8 69 239-316 71-142 (288)
55 PRK02391 heat shock protein Ht 38.1 72 0.0016 33.6 6.2 68 240-316 78-148 (296)
56 PRK03001 M48 family peptidase; 37.5 55 0.0012 34.2 5.3 68 240-316 69-139 (283)
57 KOG2062 26S proteasome regulat 35.7 99 0.0021 36.1 6.9 102 653-762 494-599 (929)
58 PF08014 DUF1704: Domain of un 34.9 1.9E+02 0.0041 31.2 8.8 83 243-340 118-213 (349)
59 PRK01265 heat shock protein Ht 34.3 76 0.0017 33.8 5.6 66 241-315 86-154 (324)
60 cd00244 AlgLyase Alginate Lyas 34.1 6E+02 0.013 27.1 11.9 123 625-757 148-285 (339)
61 cd04279 ZnMc_MMP_like_1 Zinc-d 33.2 1.6E+02 0.0035 27.4 7.2 37 219-255 2-41 (156)
62 COG2372 CopC Uncharacterized p 32.8 1.3E+02 0.0027 27.1 5.7 60 47-109 47-110 (127)
63 PF04597 Ribophorin_I: Ribopho 32.7 4.4E+02 0.0096 29.4 11.6 86 24-109 10-103 (432)
64 PF13646 HEAT_2: HEAT repeats; 32.5 60 0.0013 26.5 3.8 62 698-763 13-74 (88)
65 PF12174 RST: RCD1-SRO-TAF4 (R 32.2 82 0.0018 25.1 4.1 47 395-442 11-57 (70)
66 PF14524 Wzt_C: Wzt C-terminal 29.0 1.6E+02 0.0035 26.4 6.5 25 83-107 83-107 (142)
67 PF12069 DUF3549: Protein of u 28.5 3.8E+02 0.0083 28.7 9.5 47 717-763 213-259 (340)
68 PF09768 Peptidase_M76: Peptid 28.2 2.3E+02 0.0049 27.2 7.1 18 297-314 67-84 (173)
69 KOG2661 Peptidase family M48 [ 28.2 40 0.00086 35.2 2.2 19 298-316 272-290 (424)
70 PRK10301 hypothetical protein; 27.9 3.4E+02 0.0074 24.3 8.0 26 84-109 84-109 (124)
71 PF01431 Peptidase_M13: Peptid 27.8 47 0.001 32.7 2.7 33 287-319 22-54 (206)
72 COG3091 SprT Zn-dependent meta 27.7 84 0.0018 29.1 3.9 13 300-312 60-72 (156)
73 COG2856 Predicted Zn peptidase 26.6 2.2E+02 0.0048 28.3 7.0 39 301-339 72-115 (213)
74 KOG3607 Meltrins, fertilins an 26.5 1.5E+02 0.0033 35.3 6.8 81 220-312 242-334 (716)
75 PF09836 DUF2063: Uncharacteri 24.7 40 0.00087 28.5 1.3 31 401-431 54-84 (94)
76 PF13205 Big_5: Bacterial Ig-l 23.8 4.4E+02 0.0096 22.2 8.3 26 83-108 59-85 (107)
77 smart00638 LPD_N Lipoprotein N 23.8 4.8E+02 0.01 30.3 10.5 80 659-745 340-422 (574)
78 PF13402 M60-like: Peptidase M 23.6 1.6E+02 0.0034 31.1 5.9 107 232-346 144-259 (307)
79 cd04272 ZnMc_salivary_gland_MP 23.1 1.8E+02 0.0039 28.9 5.9 13 301-313 145-157 (220)
80 PF13699 DUF4157: Domain of un 22.9 51 0.0011 27.0 1.5 63 243-313 6-73 (79)
81 PRK09687 putative lyase; Provi 22.2 8.9E+02 0.019 25.1 12.4 149 586-762 51-203 (280)
82 PF13688 Reprolysin_5: Metallo 20.9 65 0.0014 31.4 2.1 15 299-313 140-154 (196)
83 cd03572 ENTH_epsin_related ENT 20.3 4E+02 0.0087 23.9 6.7 22 665-686 61-82 (122)
No 1
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-142 Score=1255.36 Aligned_cols=748 Identities=48% Similarity=0.784 Sum_probs=685.8
Q ss_pred cCCCCCCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEEcCCCEEEEEecCcEEeEEEeeeccCCCCccccCeeEEEec
Q 004108 4 FKGQPRLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVE 83 (773)
Q Consensus 4 ~~~~~rLp~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~ 83 (773)
+...+|||++++|+||+|+|.+++....|.|++.|.+.+.++|+.|+||+.+++|.++.+....................
T Consensus 25 ~~~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (882)
T KOG1046|consen 25 FPNEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEKEQ 104 (882)
T ss_pred ccccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCccccccccccccc
Confidence 34679999999999999999999999999999999999999999999999999999999875322111110110011111
Q ss_pred CCeEEEEEeCCCCCcc-eEEEEEEEEeeeCCCCcceEEeeecc-CCeeeeeeeccCCcCCCCceeeccCCCCCceEEEEE
Q 004108 84 ADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL-NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKIT 161 (773)
Q Consensus 84 ~~~~l~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~-~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~ka~f~i~ 161 (773)
. +.+.+.+++++.+| +|+|+|.|.|.+++++.|||+++|.+ .+..+++++|||||++||++|||||||++||+|+|+
T Consensus 105 ~-~~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~It 183 (882)
T KOG1046|consen 105 E-ETLVFPLNETLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTIT 183 (882)
T ss_pred c-eEEEEEcccccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEEE
Confidence 1 67888888999999 79999999999999999999999987 566699999999999999999999999999999999
Q ss_pred EEeCCCCeEeecCcccee-eecCCeEEEEEEeCCCccceEEEEEEeeeeEeeecccCCeEEEEEEcCCchhhHHHHHHHH
Q 004108 162 LDVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 240 (773)
Q Consensus 162 i~~p~~~~~isn~~~~~~-~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~~ 240 (773)
|.||++++|+||||+..+ ..++++++++|++||+||||++||+||+|++.+..+.+|+++++|++|+...+.+++++.+
T Consensus 184 l~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~ 263 (882)
T KOG1046|consen 184 LVHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVA 263 (882)
T ss_pred EEecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHHH
Confidence 999999999999999876 4455599999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcCc
Q 004108 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 320 (773)
Q Consensus 241 ~~~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~ 320 (773)
+++|++|+++||+|||+||+|+|++|+|..|||||||||+|+|..+|+++..++..++++++.+||||+|||||||+|||
T Consensus 264 ~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm 343 (882)
T KOG1046|consen 264 TKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTM 343 (882)
T ss_pred HHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHhhhHHHHHHHHHhhhhCCchhhHHHHHHHHH-hhhhccccCCCCceeeecCCchhhccccccccccchhHHH
Q 004108 321 EWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 399 (773)
Q Consensus 321 ~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl 399 (773)
+||+|+|||||||+|+++++++..+|+|..+++++.+.. .++..|++.++||+..++.++.++...||.++|.||++||
T Consensus 344 ~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvl 423 (882)
T KOG1046|consen 344 KWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVL 423 (882)
T ss_pred hhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHH
Confidence 999999999999999999999999999999999887776 5799999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCceeEEEEEeCCEEEEEEEeeecC
Q 004108 400 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLSS 479 (773)
Q Consensus 400 ~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~~~v~~~~~~~~l~Q~rf~~~ 479 (773)
|||+.++|++.|++||+.||.+|+|+|++++|||++|+...+.|++++|+.|+.|+|||+|+|+++++.++++|+||+..
T Consensus 424 RML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~~ 503 (882)
T KOG1046|consen 424 RMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQERFLSD 503 (882)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCCEEEEehhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC--CCCCeeEEEEEEEeCcccceeeEEeecceeEEEecccccccccCCCCCCceEEeccCceeEEEEEcCHHHHHHHHH
Q 004108 480 GS--PGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGY 557 (773)
Q Consensus 480 ~~--~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~gyyrv~Yd~~~w~~l~~ 557 (773)
.. +....|+||++|.+.+.+.....|+..++..+.++. .+ +||++|.++.|||||+||+++|..|++
T Consensus 504 ~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~--~wi~~N~~~~g~yRV~Yd~~~w~~l~~ 572 (882)
T KOG1046|consen 504 PDPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------SD--QWIKVNLEQTGYYRVNYDDENWALLIE 572 (882)
T ss_pred CCccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------CC--eEEEEeCCcceEEEEEeCHHHHHHHHH
Confidence 54 334599999999887655445678887777777764 33 699999999999999999999999999
Q ss_pred HHHh-cCCChhhhhHHHHHHHHHHHhccCCHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 004108 558 AIEM-KQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFI 636 (773)
Q Consensus 558 ~L~~-~~~~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 636 (773)
+|.. ..+++.+|++||+|+|+|+++|+++++.+|+++.||.+|++|.||..+...|..+.. +.. .+.+..++.|++
T Consensus 573 ~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~~~--~~~~~~~~~~~~ 649 (882)
T KOG1046|consen 573 QLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-LED--TEIYSKFKEFVK 649 (882)
T ss_pred HHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-ccc--chHHHHHHHHHH
Confidence 9976 689999999999999999999999999999999999999999999999999999888 544 458899999999
Q ss_pred HHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCCchhhhhhhheeeecccCC
Q 004108 637 SLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSAS 716 (773)
Q Consensus 637 ~l~~~~~~~lg~~~~~~~~~~~~~lR~~v~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g 716 (773)
+++.++++++||.....++ ....+|..++..||..|+++|.+.|..+|++|+.. ++.+|+++|.+|||.++ ++|
T Consensus 650 ~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~--~~~ip~~lr~~vy~~~~---~~g 723 (882)
T KOG1046|consen 650 KLILPIFEKLGWSDGADSS-LDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAG--TNPIPPDLREVVYCTAV---QFG 723 (882)
T ss_pred HHHHHHHHHhcCCccccch-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc--CCCCChhhhhhhhhHHH---Hhc
Confidence 9999999999999855444 77899999999999999999999999999999987 77899999998887655 488
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC-CCCCCcccc
Q 004108 717 DRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EPRCCVWTC 772 (773)
Q Consensus 717 ~~~~~~~l~~~y~~s~~~~er~~ll~aL~~~~d~~ll~~~L~~~l~~-~vr~qD~~~ 772 (773)
+++.|++++++|+++....||..+++||+|++++++++++|++.++. .++.||...
T Consensus 724 ~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~ 780 (882)
T KOG1046|consen 724 TEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRLLDLAFDAENVRDQDVLT 780 (882)
T ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHHHHHhcccccccchhHHH
Confidence 99999999999999999999999999999999999999999999884 699999753
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=1.6e-119 Score=1065.20 Aligned_cols=710 Identities=24% Similarity=0.338 Sum_probs=594.6
Q ss_pred CceeeEEEEEEEecCCCC--eEEEEEEEEEEEEcCCCEEEEEecCcEEeEEEeeeccCCCCccccCeeEEEecCCeEEEE
Q 004108 13 FAVPKRYDIRLTPDLTSC--KFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (773)
Q Consensus 13 ~v~p~~Y~l~l~~d~~~~--~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (773)
.+.+.||+|+|+++.+.. .+.|+++|++++.++++.|.||+.+++|++|.+++. ..+....++. .|
T Consensus 13 ~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~----------~~~~~~~~~~--~i 80 (831)
T TIGR02412 13 LITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGI----------LDVAPVYDGS--RI 80 (831)
T ss_pred hccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCc----------ccCccccCCC--EE
Confidence 467999999999976544 558999999999888999999999999999998651 1112222333 46
Q ss_pred EeCCCCCcceEEEEEEEEeeeCCCCcceEEeeeccCCeeeeeeeccCCcCCCCceeeccCCCCCceEEEEEEEeCCCCeE
Q 004108 91 EFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVA 170 (773)
Q Consensus 91 ~l~~~l~~g~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~ka~f~i~i~~p~~~~~ 170 (773)
.++. |++|.++|+|.|.+.+++.+.|+|+..+..+|+ ++++|||||.+||+||||||||++||+|+|+|++|++|+|
T Consensus 81 ~l~~-l~~g~~~l~i~~~~~~~~~~~Gl~~~~~~~~g~--~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v 157 (831)
T TIGR02412 81 PLPG-LLTGENTLRVEATRAYTNTGEGLHRFVDPVDGE--VYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTV 157 (831)
T ss_pred EccC-CCCCceEEEEEEEEEecCCCceEEEEEeCCCCe--EEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceE
Confidence 6655 777889999999999999999999865544453 7789999999999999999999999999999999999999
Q ss_pred eecCccceeeecCCeEEEEEEeCCCccceEEEEEEeeeeEeeecccCCeEEEEEEcCCchhh--HHHHHHHHHHHHHHHH
Q 004108 171 LSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQ--GKFALNVAVKTLELYK 248 (773)
Q Consensus 171 isn~~~~~~~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~--~~~~l~~~~~~l~~~e 248 (773)
+|||++......++.++++|+.|+|||||++||++|+|..++. +.+|+++++|++|+..+. ++++++.++++|++|+
T Consensus 158 ~sNg~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~-~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e 236 (831)
T TIGR02412 158 ISNSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQD-ESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFH 236 (831)
T ss_pred ECCCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEee-cCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999987765556678899999999999999999999998874 356899999999987654 5789999999999999
Q ss_pred HHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcCccccchhHH
Q 004108 249 EYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWL 328 (773)
Q Consensus 249 ~~fg~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL 328 (773)
++||+|||++|+|+|++|+|..|||||||+|+|+|. +++++. .+...++.++.+|+||+|||||||+|||+||+|+||
T Consensus 237 ~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~-~l~~~~-~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWL 314 (831)
T TIGR02412 237 RKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAE-ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWL 314 (831)
T ss_pred HHhCCCCCcccCCEEEcCCCCCCcccccceeeechh-hccCCc-CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhH
Confidence 999999999999999999999999999999999999 555554 335566778999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhhCCchhhHHHHHHHHH-hhhhccccCCCCceeeecCCchhhccccccccccchhHHHHHHHHhhC
Q 004108 329 NEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 407 (773)
Q Consensus 329 ~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG 407 (773)
|||||+||+++++++.+|++..|..|..... .++..|+..++||+..++.++.++...|+.++|.||++||+||+..||
T Consensus 315 nEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lG 394 (831)
T TIGR02412 315 NESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVG 394 (831)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHC
Confidence 9999999999999999999988888876544 668889999999999989888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCceeEEEEEeC--CEEE-EEEEeeecCCCCCC
Q 004108 408 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE--EKLE-LEQSQFLSSGSPGD 484 (773)
Q Consensus 408 ~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~~~v~~~~--~~~~-l~Q~rf~~~~~~~~ 484 (773)
++.|+++||.|+++|+|+|++++|||+++++++|.++++||++|++++|+|+|+|+++. +.+. +.|.+ .+ ..
T Consensus 395 ee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~---~~--~~ 469 (831)
T TIGR02412 395 EEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPES---SG--PP 469 (831)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEec---CC--CC
Confidence 99999999999999999999999999999999999999999999999999999998753 4444 22221 11 12
Q ss_pred CeeEEEEEEEeCccccee-----eEEeecceeEEEecccccccccCCCCCCceEEeccCceeEEEEEcCHHHHHHHHHHH
Q 004108 485 GQWIVPITLCCGSYDVCK-----NFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAI 559 (773)
Q Consensus 485 ~~w~iPl~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~gyyrv~Yd~~~w~~l~~~L 559 (773)
..|.|||.+....+.... .+++...... ++... ...++ +||++|.++.|||||+||+++|..|+++|
T Consensus 470 ~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~--~~v~~N~~~~gyyrv~yd~~~~~~l~~~l 541 (831)
T TIGR02412 470 RPHRIAIGLYDLDRDDLRRTTLVPLTISGERTA--VPQLV----GKRAP--ALVLLNDDDLTYAKVRLDPTSFDTVLAAL 541 (831)
T ss_pred CCeeEEEeeeecCCCcceeeeEEEEEEecCcee--ehhhc----CCCCC--CEEEEeCCCcEEEEEECCHHHHHHHHHHh
Confidence 469999998654332111 1333332222 22110 01233 79999999999999999999999999998
Q ss_pred HhcCCChhhhhHHHHHHHHHHHhccCCHHHHHHHH-HhccCCCchhHHHHHHHHHH-HHHHHHhccChHHHHHHHHHHHH
Q 004108 560 EMKQLSETDRFGILDDHFALCMARQQTLTSLLTLM-ASYSEETEYTVLSNLITISY-KIGRIAADARPELLDYLKQFFIS 637 (773)
Q Consensus 560 ~~~~~~~~~r~~li~D~~~la~~g~l~~~~~l~l~-~~l~~E~~~~~w~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~ 637 (773)
.. ..++.+|++|++|+|+++++|.++++.+|+++ .||++|+++.||..++..+. .+...+.. ++.+..+++++..
T Consensus 542 ~~-~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ 618 (831)
T TIGR02412 542 SK-LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYAP--IADRPALLAVAAL 618 (831)
T ss_pred hh-CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 53 33799999999999999999999999999955 89999999999999999999 88888754 5678889999988
Q ss_pred HHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCCchhhhhhhheeeecccCCC
Q 004108 638 LFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASD 717 (773)
Q Consensus 638 l~~~~~~~lg~~~~~~~~~~~~~lR~~v~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~ 717 (773)
++.+.... ++++.+..+|. +..++|..|+++|++.++++|+.|+++ ..|+||+|..|||++++ ++
T Consensus 619 ~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~dlr~~v~~~~~~----~~ 683 (831)
T TIGR02412 619 ACRSLRRA-------MESGPDFQLRW-LRALALTATDPDSLRRLLSLLDGKIKG---LALDPDLRWRIIARLAA----LG 683 (831)
T ss_pred HHHHHHhc-------cCCCccHHHHH-HHHHHHhcCCHHHHHHHHHHHhCCCCC---cccCHhHHHHHHHHHHh----cC
Confidence 88764422 22223333333 555799999999999999999987654 36999999999886543 57
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC-CCCCCccc
Q 004108 718 RSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EPRCCVWT 771 (773)
Q Consensus 718 ~~~~~~l~~~y~~s~~~~er~~ll~aL~~~~d~~ll~~~L~~~l~~-~vr~qD~~ 771 (773)
..+|+.++++|++++++.+|..++.||||++||+++++.+..++++ .++.||+.
T Consensus 684 ~~~~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (831)
T TIGR02412 684 FIDADDIAAELERDNTASGEEHAAAARAARPDAAAKREAWQKLVTTDALPNSKQR 738 (831)
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCCHHHHH
Confidence 7889999999999999999999999999999999999766666665 58988863
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-90 Score=811.27 Aligned_cols=729 Identities=31% Similarity=0.484 Sum_probs=590.7
Q ss_pred CCCCCcee-eE--EEEEEEecCC--CCeEEEEEEEEEEE--EcCCCEEEEEecCcEEeEEEeeeccCCCCccccCeeEEE
Q 004108 9 RLPKFAVP-KR--YDIRLTPDLT--SCKFGGSVAIDVDV--VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL 81 (773)
Q Consensus 9 rLp~~v~p-~~--Y~l~l~~d~~--~~~~~G~v~I~~~~--~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~ 81 (773)
.++..+.| .+ |++.|+++.. +.+|+|+++|++.. ..+...|+||+.+|+|.++++++... .. ...+
T Consensus 12 ~~~~~~~~~~~~i~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~------~~-~~~~ 84 (859)
T COG0308 12 ALSLDYRPPEYAIYDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKAL------TA-WYRL 84 (859)
T ss_pred cccccCCCccccccceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccc------cc-cccc
Confidence 44555555 67 7777765544 58999999999987 33344499999999999999987310 11 1233
Q ss_pred ecCCeEEEEEeCCC--C---CcceEEEEEEEEeeeC-CCCcceEEeeeccCCeeeeeeeccCCcCCCCceeeccCCCCCc
Q 004108 82 VEADEILVLEFAET--L---PTGMGVLAIGFEGVLN-DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACK 155 (773)
Q Consensus 82 ~~~~~~l~i~l~~~--l---~~g~~~l~i~y~g~~~-~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~k 155 (773)
+ .+.+.|....+ . .++...+.+.+++... +.+.|+|++.+.. ..+++||||+.+||+||||+|+|+.|
T Consensus 85 ~--~~~~~i~~~~~~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~~~----~~~~~TQ~Ea~~aR~~fpc~D~P~~k 158 (859)
T COG0308 85 D--GDALTITVAPPIPERSERPFTLAITYEFTGPVSNDTLEGLYRSGYGG----KPYLITQCEAEGARRIFPCIDEPDVK 158 (859)
T ss_pred c--CccceeeeccccccccCCCccEEEEEEecccccCccccceeecCCCC----CeeEEeecccCCCceeeecCCCCCCc
Confidence 3 33333433222 2 2346778888888776 6788999876543 67889999999999999999999999
Q ss_pred eEEEEEEEeCCCCeEeecCccceeee-cCCeEEEEEEeCCCccceEEEEEEeeeeEeeeccc---CCeEEEEEEcCCchh
Q 004108 156 ATFKITLDVPSELVALSNMPVIDEKV-DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTS---DGIKVRVYCQVGKAN 231 (773)
Q Consensus 156 a~f~i~i~~p~~~~~isn~~~~~~~~-~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~---~g~~v~v~~~~~~~~ 231 (773)
|+|+++|+.++++.++|||+...... .+++++++|..++||||||+|+++|+|..++.... .++++++|++++...
T Consensus 159 atf~~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~ 238 (859)
T COG0308 159 ATFTLTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLD 238 (859)
T ss_pred ceeEEEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchh
Confidence 99999999999999999999987643 35589999999999999999999999988775442 479999999998889
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHH
Q 004108 232 QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 311 (773)
Q Consensus 232 ~~~~~l~~~~~~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaH 311 (773)
.++++++.+.++++|||++||+|||+++ ++|++|+|+.|||||||+++|++..+|.++..++....++++.+|+||+||
T Consensus 239 ~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaH 317 (859)
T COG0308 239 RAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAH 317 (859)
T ss_pred hhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999998878888889999999999999
Q ss_pred HHhcCCcCccccchhHHhhhHHHHHHHHHhhhhCC-chhhHHHHHHHHHh-hhhccccCCCCceeeecCCchhhcccccc
Q 004108 312 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECTE-GLRLDGLAESHPIEVEVNHTGEIDEIFDA 389 (773)
Q Consensus 312 qWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~d~~~~~~pi~~~~~~~~~~~~~f~~ 389 (773)
|||||+|||+||+++|||||||+|+++.+.+.++| .|..|..+...... ++..|+...+||+...+.++.+++..||.
T Consensus 318 qWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~ 397 (859)
T COG0308 318 QWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDA 397 (859)
T ss_pred hcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcch
Confidence 99999999999999999999999999999999999 88888888766554 78889999999999999999999999999
Q ss_pred ccccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCceeEEEEEeCC-E
Q 004108 390 ISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEE-K 468 (773)
Q Consensus 390 i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~~~v~~~~~-~ 468 (773)
++|.||++|+|||+.++|++.|++||+.|+++|++++++++|||+++++++|+|++.+|..|++|+|+|++.|+..++ .
T Consensus 398 i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q~G~P~l~v~~~~~~~ 477 (859)
T COG0308 398 IVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQAGYPVLTVSVRYDDF 477 (859)
T ss_pred hhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhCCCCCceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887 7
Q ss_pred EEEEEEeeecCCCCCCCeeEEEEEEEeCcccceeeEEeecceeEEEecccccccccCCCCCCceEEeccCceeEEEEEcC
Q 004108 469 LELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYD 548 (773)
Q Consensus 469 ~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~gyyrv~Yd 548 (773)
++++|.||...+......|.||+.+.....+......+.+...++.+.... ..+- .-+++|....|+|++.|+
T Consensus 478 ~~l~~~q~~~~~~~~~~~~~iPl~~~~~~~~~~~~~~~~~~~~t~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~y~ 550 (859)
T COG0308 478 FKLTQKQFTPPGQEEKRPWPIPLAIKLLDGGGVKVLLLTEGEQTVTFELVG-----IPPF--PSLKVNDSAPVFYRVDYS 550 (859)
T ss_pred EEEEEEEeccCCCccCceeeeccEEEecCCCCceeeeeeccceEEEEeccc-----CCcc--ceeeccCCccceEEEecC
Confidence 999999998877334459999999988754422334455555566665321 1111 368999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHhccCCHHHHHHHHHhccCCCchhHH-HHHHHH-HHHHHHHHhccChH
Q 004108 549 KDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVL-SNLITI-SYKIGRIAADARPE 626 (773)
Q Consensus 549 ~~~w~~l~~~L~~~~~~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w-~~~~~~-l~~l~~~~~~~~~~ 626 (773)
.+.|..++... ..++..+|+.++.|..++..+|..+...+...+....++....++ ..++.. +..+.... . .+
T Consensus 551 ~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~--~~ 625 (859)
T COG0308 551 DQSLSKLLQHD--PRLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVSLEQAFKSLLLALPSFA-D--LE 625 (859)
T ss_pred HHHHHHHHhhh--hhhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccch-h--hh
Confidence 99998887663 378899999999999999999999999999877665544444443 333332 22222221 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCCchhhhhhh
Q 004108 627 LLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAY 706 (773)
Q Consensus 627 ~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lR~~v~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy 706 (773)
..+.......+...+.++++....++... ......+ +.++...+..+.+.+..++..+-.. ...+++++|..+-
T Consensus 626 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 699 (859)
T COG0308 626 --KFIDPDAIDQLRDALVRLGAEAVADDLLA-LYHIGAL-SQSLYEEDASLAALRALRNACLERL--EKQEDPELRSLVV 699 (859)
T ss_pred --hhcCHHHHHHHHHHHHHHHHHhhcchHHH-HHHhhhh-ccccccccHHHHHHHHHHHHHHhhc--ccccChhHHHHHH
Confidence 34556666777777778877764433322 2222222 6677778889999999998887543 3458899998765
Q ss_pred heeeecccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC-CCCCCccc
Q 004108 707 VAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EPRCCVWT 771 (773)
Q Consensus 707 ~~~~~~~~~g~~~~~~~l~~~y~~s~~~~er~~ll~aL~~~~d~~ll~~~L~~~l~~-~vr~qD~~ 771 (773)
..+.. +.+..+.+..+.+.|..+.....+..+..+.+..+.+..+.+.|..+..+ .+..||+.
T Consensus 700 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 763 (859)
T COG0308 700 KAYAA--AGNMTDALKALLEAYQSPTRAEALRDFADAFGRFPLVMDKWFALQAISPGDTVLEQDIG 763 (859)
T ss_pred HHHHH--hcChHHHHHHHHHhcccCChHHHHHHHHHHhcccccHHHHHHHHHhcCCCcchHHHHHH
Confidence 55443 23444478999999998888899999999999999999999999998877 57777753
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=6.1e-85 Score=758.59 Aligned_cols=707 Identities=21% Similarity=0.270 Sum_probs=504.4
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEEEcCCCEEEEEecCcEEeEEEeeeccCCCCccccCeeEEEecCCeEEEE
Q 004108 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (773)
Q Consensus 11 p~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (773)
|..+...||+|+|+++++...++|+++|+++..++.+.|+||+.+|+|.+|.+++. .+. ...+..+++.++|
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~------~~~--~~~~~~~~~~L~I 75 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGK------PLA--AGDYQLDDETLTI 75 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCE------ecC--cceEEEcCCEEEE
Confidence 56688999999999999999999999999998766778999999999999999652 111 1335566678888
Q ss_pred EeCCCCCcceEEEEEEEEeee--CCCCcceEEeeeccCCeeeeeeeccCCcCCCCceeeccCCCCCceEEEEEEEeCCC-
Q 004108 91 EFAETLPTGMGVLAIGFEGVL--NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE- 167 (773)
Q Consensus 91 ~l~~~l~~g~~~l~i~y~g~~--~~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~ka~f~i~i~~p~~- 167 (773)
.. + ++.++|+|.|.+.. +....|+|++.+ +++|||||.+||++|||||+|++||+|+++|++|++
T Consensus 76 ~~---~-~~~~~l~i~~~~~p~~n~~l~GlY~s~~--------~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~ 143 (863)
T TIGR02414 76 AS---V-PESFTLEIETEIHPEENTSLEGLYKSGG--------NFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKK 143 (863)
T ss_pred ee---C-CccEEEEEEEEeecccCCCCeEEEEeCC--------eEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCc
Confidence 73 2 36789999997644 456789998753 568999999999999999999999999999999986
Q ss_pred C-eEeecCcccee-eecCCeEEEEEEeCCCccceEEEEEEeeeeEeeec----ccCCeEEEEEEcCCchhhHHHHHHHHH
Q 004108 168 L-VALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQGKFALNVAV 241 (773)
Q Consensus 168 ~-~~isn~~~~~~-~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~----~~~g~~v~v~~~~~~~~~~~~~l~~~~ 241 (773)
| +++|||+++.. ...+++++++|+.++|||+||+||++|+|+.++.. ...++++++|++|+..+.++++++.++
T Consensus 144 y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~ 223 (863)
T TIGR02414 144 YPVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLK 223 (863)
T ss_pred ceEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHH
Confidence 6 66899987765 33567888999999999999999999999988743 224588999999999899999999999
Q ss_pred HHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcCcc
Q 004108 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTME 321 (773)
Q Consensus 242 ~~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~ 321 (773)
++|++||++||+|||++|+++|++|+|..||||||||++|++..++.++..++...++.+..+|+||+|||||||+||++
T Consensus 224 ~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~ 303 (863)
T TIGR02414 224 KAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCR 303 (863)
T ss_pred HHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeec
Confidence 99999999999999999999999999999999999999999999999988666667778999999999999999999999
Q ss_pred ccchhHHhhhHHHHHHHHHhhhhCCchhhHHHHHHHHH-hhhhccccCCCCceeeecCCchhhccccccccccchhHHHH
Q 004108 322 WWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIR 400 (773)
Q Consensus 322 ~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl~ 400 (773)
||+++|||||||+|++..+.....+............. ..+..|+...+||+.. .+..+++..|+.++|.||++|||
T Consensus 304 ~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr~~~f~~D~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~vLr 381 (863)
T TIGR02414 304 DWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLRAHQFPEDAGPMAHPVRP--ESYVEINNFYTATVYEKGAEVIR 381 (863)
T ss_pred chhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcccccccCCCCCC--cchhhHHhccchHHhHHHHHHHH
Confidence 99999999999999997665554432110000000011 2345577778888864 34456778899999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCceeEEEEEeC----C--EEEEEEE
Q 004108 401 MLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQS 474 (773)
Q Consensus 401 mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~~~v~~~~----~--~~~l~Q~ 474 (773)
||+..||++.|+++|+.|+++|++++++++|||+++++++|.|+++|+ +|++|+|+|+|+|+++. + +++++|.
T Consensus 382 ML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~ 460 (863)
T TIGR02414 382 MLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQS 460 (863)
T ss_pred HHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEe
Confidence 999999999999999999999999999999999999999999999985 89999999999999863 2 4555555
Q ss_pred eeecCCCCCCCeeEEEEEEEeC--cccc-----------eeeEEeecceeEEEecccccccccCCCCCCceEEeccCcee
Q 004108 475 QFLSSGSPGDGQWIVPITLCCG--SYDV-----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTG 541 (773)
Q Consensus 475 rf~~~~~~~~~~w~iPl~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~g 541 (773)
+....+......|.|||.+... ++.. ...+.++.+++++.++.+. .. ..+-++.+.+-
T Consensus 461 ~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~------~~---p~~sl~r~fsa 531 (863)
T TIGR02414 461 TPPTPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIA------EK---PVPSLLRGFSA 531 (863)
T ss_pred CCCCCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCC------CC---CeeeecCCCCc
Confidence 4322223334589999998653 2211 1235677788888887532 12 35788888888
Q ss_pred EEEEEcC--HHHHHHHHHHHHhcCCChhhhh---HHHHHH--HHH---HHhcc-CC-HHHHHHHHHhccCCCchhHHHHH
Q 004108 542 FYRVKYD--KDLAARLGYAIEMKQLSETDRF---GILDDH--FAL---CMARQ-QT-LTSLLTLMASYSEETEYTVLSNL 609 (773)
Q Consensus 542 yyrv~Yd--~~~w~~l~~~L~~~~~~~~~r~---~li~D~--~~l---a~~g~-l~-~~~~l~l~~~l~~E~~~~~w~~~ 609 (773)
+-++.|+ ++.+..|... + -...+|. |-|..- ..+ ...|. +. -..+++.+..+-.+.+.-++-.+
T Consensus 532 pv~l~~~~~~~~l~~l~~~---d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~a 607 (863)
T TIGR02414 532 PVNLEYPYSDEDLLLLLAH---D-SDPFNRWEAGQRLARRVILANIARAQGGEELPVDPAFIDALGKLLNDPHLDAAFKA 607 (863)
T ss_pred eEEEeCCCCHHHHHHHHhh---C-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 8888775 3444433332 1 1122332 211111 011 11232 11 23455555554322222222111
Q ss_pred --H--HHHHHHHHHHhccChHHH--------HHHHHHHHHHHHHHHHhcCCcc---CCCCCHHHHHHHHHHHHHHHhcCC
Q 004108 610 --I--TISYKIGRIAADARPELL--------DYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLGH 674 (773)
Q Consensus 610 --~--~~l~~l~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lR~~v~~~ac~~g~ 674 (773)
+ .....|...+..-+|+.- ..+..-++..+..+|+++--.. ...+..-.+.||..+++++|..+.
T Consensus 608 ~~l~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~ 687 (863)
T TIGR02414 608 LLLALPSEAYLAELMENIDPDALHAAREFLRAAIARQLADDLLRLYDALQENGPYSVDPAAAGRRALRNACLSYLSAADD 687 (863)
T ss_pred HHhcCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 111223332221122222 2233334444555666653111 011223458999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCchhhhhhhheeeecccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHH
Q 004108 675 KETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVL 754 (773)
Q Consensus 675 ~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~er~~ll~aL~~~~d~~ll~ 754 (773)
++..+.|.+.|++-- + -.-|-+.+.+++..-....++..+..+++++.....-+|.-.+.|.+ ..++.+.
T Consensus 688 ~~~~~~~~~~~~~a~---~-----mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~--~~~~~~~ 757 (863)
T TIGR02414 688 AEIRNLALEQFKSAD---N-----MTDRLAALSALVHFESDFRERALAAFYQKWKDDPLVMDKWFALQATS--PRPDTLE 757 (863)
T ss_pred hhHHHHHHHHHHhCC---C-----HHHHHHHHHHHhcCCChhHHHHHHHHHHHHCCCchhHHHHHHHHhCC--CcccHHH
Confidence 999999988887531 1 11233333443321111123346666777777666678888888754 3445555
Q ss_pred HHHHHhcCC
Q 004108 755 EVLNFLLSS 763 (773)
Q Consensus 755 ~~L~~~l~~ 763 (773)
++-.+.-++
T Consensus 758 ~v~~l~~h~ 766 (863)
T TIGR02414 758 RVKALLQHP 766 (863)
T ss_pred HHHHHhcCC
Confidence 555554444
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=3.6e-84 Score=754.60 Aligned_cols=710 Identities=22% Similarity=0.278 Sum_probs=499.7
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEE-EcCCCEEEEEecCcEEeEEEeeeccCCCCccccCeeEEEecCCeEEE
Q 004108 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILV 89 (773)
Q Consensus 11 p~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (773)
|..+...||+|+|+++++...++|+++|+... .++.+.|+||+.+|+|++|.+++. .+.+. .+..+++.++
T Consensus 16 ~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~------~~~~~--~~~~~~~~L~ 87 (875)
T PRK14015 16 PPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQ------PLAPS--AYELDEEGLT 87 (875)
T ss_pred CCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCE------EcCcc--ceEEcCCEEE
Confidence 55688899999999999999999999999876 456789999999999999998752 11111 4555567888
Q ss_pred EEeCCCCCcceEEEEEEEEeeeC--CCCcceEEeeeccCCeeeeeeeccCCcCCCCceeeccCCCCCceEEEEEEEeCC-
Q 004108 90 LEFAETLPTGMGVLAIGFEGVLN--DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPS- 166 (773)
Q Consensus 90 i~l~~~l~~g~~~l~i~y~g~~~--~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~ka~f~i~i~~p~- 166 (773)
|.. + ++.++|+|.|++... ....|+|++.+ +++|||||.+||+||||+|+|++||+|+++|++|+
T Consensus 88 I~~---l-~~~~~l~I~y~~~P~~n~~l~Gly~s~~--------~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~ 155 (875)
T PRK14015 88 IEN---L-PDRFTLEIETEIDPEANTALEGLYRSGG--------MFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKA 155 (875)
T ss_pred Eec---C-CccEEEEEEEEEecCCCCCceeeEEECC--------EEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccc
Confidence 872 3 346899999997653 44679998642 56899999999999999999999999999999999
Q ss_pred CC-eEeecCccceee-ecCCeEEEEEEeCCCccceEEEEEEeeeeEeeec--c--cCCeEEEEEEcCCchhhHHHHHHHH
Q 004108 167 EL-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH--T--SDGIKVRVYCQVGKANQGKFALNVA 240 (773)
Q Consensus 167 ~~-~~isn~~~~~~~-~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~--~--~~g~~v~v~~~~~~~~~~~~~l~~~ 240 (773)
.| +++|||+++.+. ..+++++++|+.++|||+||+||++|+|+.++.. + ..++++++|++|+..+.++++++.+
T Consensus 156 ~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~ 235 (875)
T PRK14015 156 KYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSL 235 (875)
T ss_pred cCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHH
Confidence 48 689999988774 4677889999999999999999999999987742 2 2359999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcCc
Q 004108 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 320 (773)
Q Consensus 241 ~~~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~ 320 (773)
+++|++||++||+|||++|+++|++|+|..|||||||+++|++..++.++...+...+..+..+||||+|||||||+||+
T Consensus 236 ~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~ 315 (875)
T PRK14015 236 KKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTC 315 (875)
T ss_pred HHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCccee
Confidence 99999999999999999999999999999999999999999999999888766666777889999999999999999999
Q ss_pred cccchhHHhhhHHHHHHHHHhhhhCCc-hhhHHHHHHHHHhhhhccccCCCCceeeecCCchhhccccccccccchhHHH
Q 004108 321 EWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 399 (773)
Q Consensus 321 ~~w~d~WL~EGfA~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl 399 (773)
.||+++|||||||+|++..+.....+. +.............+..|+...+||+... +..++...|+.++|.||++||
T Consensus 316 ~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~a~pi~p~--~~~~i~~~f~~~~Y~KGA~vL 393 (875)
T PRK14015 316 RDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPMAHPVRPD--SYIEINNFYTATVYEKGAEVI 393 (875)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccccccCCCCCCc--chhhHHhcccchhhhHHHHHH
Confidence 999999999999999987765554321 11111100000123445666677887532 344677889999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCceeEEEEEeC----C--EEEEEE
Q 004108 400 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQ 473 (773)
Q Consensus 400 ~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~~~v~~~~----~--~~~l~Q 473 (773)
|||+..||++.|+++|+.|+++|++++++++||++++++++|.|+.+|+ +|++|+|+|+++|+++. + +++++|
T Consensus 394 rMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q 472 (875)
T PRK14015 394 RMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQ 472 (875)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999986 89999999999999863 3 355666
Q ss_pred EeeecCCCCCCCeeEEEEEEEeCc--ccc----------eeeEEeecceeEEEecccccccccCCCCCCceEEeccCcee
Q 004108 474 SQFLSSGSPGDGQWIVPITLCCGS--YDV----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTG 541 (773)
Q Consensus 474 ~rf~~~~~~~~~~w~iPl~~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~g 541 (773)
.+....+......|.|||.+..-+ +.. ...+.++.+++++.++.+. .. ..+.++.+...
T Consensus 473 ~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~q~f~f~~~~------~~---p~~s~~r~fsa 543 (875)
T PRK14015 473 STPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTEAEQTFTFENVA------ER---PVPSLLRGFSA 543 (875)
T ss_pred eCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcCCeeEEEEcCCC------CC---ceEEecCCCCC
Confidence 543222333445899999986422 221 2236677888888888532 12 35788888888
Q ss_pred EEEEEcC--HHHHHHHHHHHHhcCCChhhhhHHHH-HH-HHHHHh-cc-CC-HHHHHHHHHhccCCC--chhHHHHHH--
Q 004108 542 FYRVKYD--KDLAARLGYAIEMKQLSETDRFGILD-DH-FALCMA-RQ-QT-LTSLLTLMASYSEET--EYTVLSNLI-- 610 (773)
Q Consensus 542 yyrv~Yd--~~~w~~l~~~L~~~~~~~~~r~~li~-D~-~~la~~-g~-l~-~~~~l~l~~~l~~E~--~~~~w~~~~-- 610 (773)
+-++.|+ ++.+..|...= .+.+..-+=+|-|. .. ..++.. |. +. -..+++.+..+-.+. +...-..++
T Consensus 544 pv~~~~~~~~~~l~~l~~~d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~l 622 (875)
T PRK14015 544 PVKLEYDYSDEDLLFLMAHD-SDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRAVLLDESLDPAFAAELLTL 622 (875)
T ss_pred cEEEeCCCCHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHccC
Confidence 8888776 34443333320 11122111122211 11 111111 22 11 234555555533222 222222111
Q ss_pred HHHHHHHHHHhccChHHHHH--------HHHHHHHHHHHHHHhcCCccC---CCCCHHHHHHHHHHHHHHHhcCCHHHHH
Q 004108 611 TISYKIGRIAADARPELLDY--------LKQFFISLFQNSAEKLGWDSK---PGESHLDALLRGEIFTALALLGHKETLN 679 (773)
Q Consensus 611 ~~l~~l~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~lg~~~~---~~~~~~~~~lR~~v~~~ac~~g~~~c~~ 679 (773)
.....|...+..-+++.... +..-+...+..+|+++--... ..+..-.+.||..++++++..+.++..+
T Consensus 623 p~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~~ 702 (875)
T PRK14015 623 PSEAELAEQMEVIDPDAIHAAREALRRALATALKDELLALYEALQTDGPYSPDAEAAGRRALRNVCLSYLAAADDEEAAE 702 (875)
T ss_pred CCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 11122322222112222222 223333444445555421110 1123445899999999999999888888
Q ss_pred HHHHHHHHHHcCCCCCCCCchhhhhhhheeeecccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004108 680 EASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNF 759 (773)
Q Consensus 680 ~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~er~~ll~aL~~~~d~~ll~~~L~~ 759 (773)
.|.+.|++-- + -.-|-+.+.+++..-....++..+..+++++.....-+|.-.+.|.+.. ++.+.++-.+
T Consensus 703 ~~~~~~~~a~---~-----mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~--~~~~~~v~~l 772 (875)
T PRK14015 703 LAEAQFDQAD---N-----MTDRLAALSALVNADLPERDEALADFYDRWKDDPLVMDKWFALQATSPA--PDTLERVRAL 772 (875)
T ss_pred HHHHHHhhCC---C-----HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCC--cCHHHHHHHH
Confidence 8888887431 1 1122333333332111112334666667777666667888888886544 4445444444
Q ss_pred hcCC
Q 004108 760 LLSS 763 (773)
Q Consensus 760 ~l~~ 763 (773)
.-++
T Consensus 773 ~~hp 776 (875)
T PRK14015 773 MQHP 776 (875)
T ss_pred hcCC
Confidence 4343
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=1.6e-77 Score=680.06 Aligned_cols=426 Identities=24% Similarity=0.396 Sum_probs=348.6
Q ss_pred CCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEEcC-CCEEEEEecCcEEeEEEeeeccCCCCccccCeeEEE----ec
Q 004108 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGD-TKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL----VE 83 (773)
Q Consensus 9 rLp~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~-~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~----~~ 83 (773)
.=|..++|.||+|+|++|+++.+|+|+|+|++++.++ ++.|+||+.+|+|++|.+++. +..+.. +.
T Consensus 6 sn~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~---------~~~~~~~~~~~~ 76 (601)
T TIGR02411 6 SNYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGL---------PADFAIGERKEP 76 (601)
T ss_pred cCCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCc---------ccceEeccccCC
Confidence 3477899999999999999999999999999999765 588999999999999988652 112222 23
Q ss_pred CCeEEEEEeCCCCCcc-eEEEEEEEEeeeCCCCcceEEeeec-cCCeeeeeeeccCCcCCCCceeeccCCCCCceEEEEE
Q 004108 84 ADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYE-LNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKIT 161 (773)
Q Consensus 84 ~~~~l~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~-~~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~ka~f~i~ 161 (773)
.++.+.|.+++++.+| .++|+|.|+|..+ ..|++...+. .+|..++++.|||||++||+||||||+|++||+|+++
T Consensus 77 ~g~~L~I~l~~~l~~g~~~~l~I~Y~~~~~--~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~ 154 (601)
T TIGR02411 77 LGSPLTISLPIATSKNKELVLNISFSTTPK--CTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAE 154 (601)
T ss_pred CCCeEEEEeCCccCCCceEEEEEEEeecCC--CceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEEE
Confidence 5678999999999998 8999999999753 3566544332 3566778889999999999999999999999999999
Q ss_pred EEeCCCCeEeecCccceeeecCCeEEEEEEeCCCccceEEEEEEeeeeEeeecccCCeEEEEEEcCCchhhHHHHHH-HH
Q 004108 162 LDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VA 240 (773)
Q Consensus 162 i~~p~~~~~isn~~~~~~~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~ 240 (773)
|++| +.|++||....+.. ++..+++|+.++|||+||+||+||+|+..+ .|.++++|++|+..+.+++.+. .+
T Consensus 155 I~~P--~~av~sg~~~~~~~-~~~~~~~F~~t~pmptYLia~avG~~~~~~----~g~~~~v~~~p~~~~~~~~~~~~~~ 227 (601)
T TIGR02411 155 VESP--LPVLMSGIPDGETS-NDPGKYLFKQKVPIPAYLIALASGDLASAP----IGPRSSVYSEPEQLEKCQYEFEHDT 227 (601)
T ss_pred EeeC--cceeccCCcccccc-CCCceEEEEeCCCcchhhheeeeccceecc----cCCceEEEccchhHHHHHHHHHHhH
Confidence 9999 88887665544332 345678999999999999999999998654 3678999999998888888888 99
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcC
Q 004108 241 VKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (773)
Q Consensus 241 ~~~l~~~e~~fg~~yP~~k~d~v~~-p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (773)
.++|+++|+++| |||++|+|+|++ |+|++||||||| ++|.+..++.+.. ....+||||||||||||+||
T Consensus 228 ~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~-ltf~~~~ll~~d~--------s~~~viaHElAHqWfGNlVT 297 (601)
T TIGR02411 228 ENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPN-LTFATPTLIAGDR--------SNVDVIAHELAHSWSGNLVT 297 (601)
T ss_pred HHHHHHHHHhCC-CCcCccceEEEecCccccccccccc-ceeeccccccCCh--------hhhhhHHHHHHhhccCceee
Confidence 999999999877 999999999987 789999999999 5677776765432 23579999999999999999
Q ss_pred ccccchhHHhhhHHHHHHHHHhhhhCCchhhH-HHHHH--HHHhhhhccccCCCCceeeecCCch--hhccccccccccc
Q 004108 320 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIW-TQFLD--ECTEGLRLDGLAESHPIEVEVNHTG--EIDEIFDAISYRK 394 (773)
Q Consensus 320 ~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~d~~~~~~pi~~~~~~~~--~~~~~f~~i~Y~K 394 (773)
++||+|+|||||||+|++.+++++.+|++... ..+.. .....+ +.+...+|+...+.+.. +++..|+.++|.|
T Consensus 298 ~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~K 375 (601)
T TIGR02411 298 NCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESV--KTLGEDPEYTKLVVDLKDNDPDDAFSSVPYEK 375 (601)
T ss_pred cCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHH--HhhcCCCCCCcccccCCCCChhhhccccchhh
Confidence 99999999999999999999999999986431 11111 111122 12233345444332222 5678999999999
Q ss_pred hhHHHHHHHHhhC-HHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcc-----CCCHHHH-HHHhhcCCCceeEEEEE
Q 004108 395 GASVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGS-----GEPVNKL-MNSWTKQKGYPVISVKV 464 (773)
Q Consensus 395 g~~vl~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~s-----g~~l~~~-~~~W~~~~G~P~~~v~~ 464 (773)
|+++|+||+..|| ++.|+++||.|+++|+|++++++|||++|.++. +.+++.+ |+.|++++|+|.++++.
T Consensus 376 Ga~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~ 452 (601)
T TIGR02411 376 GFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNF 452 (601)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCC
Confidence 9999999999999 999999999999999999999999999998763 2456666 89999999999987654
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=2.5e-75 Score=644.54 Aligned_cols=385 Identities=46% Similarity=0.823 Sum_probs=342.5
Q ss_pred CCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEEcCCCEEEEEecCcEEeEEEeeeccCCCCccccCeeEEEecCCeEE
Q 004108 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEIL 88 (773)
Q Consensus 9 rLp~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (773)
|||++++|.||+|.|++|++..+|+|+++|++++.++++.|+||+.+++|.++.+.+..... ......+.++.+++.+
T Consensus 1 RLp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~--~~~~~~~~~~~~~~~l 78 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSS--EYKSSPFEYDDENEKL 78 (390)
T ss_dssp S--TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSC--TECCEEEEEECCBTEE
T ss_pred CCCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccc--cccccceeecccccee
Confidence 89999999999999999999999999999999999999999999999999999997642211 1122237788888999
Q ss_pred EEEeCCCCCcc-eEEEEEEEEeeeCCCCcceEEeeecc--CCeeeeeeeccCCcCCCCceeeccCCCCCceEEEEEEEeC
Q 004108 89 VLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL--NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVP 165 (773)
Q Consensus 89 ~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~--~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~ka~f~i~i~~p 165 (773)
.|.+++++.+| .|+|+|.|+|.++++..|+|++.|.+ ++...++++||+||.+||+||||||+|.+||+|+++|++|
T Consensus 79 ~I~l~~~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p 158 (390)
T PF01433_consen 79 TITLPKPLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHP 158 (390)
T ss_dssp EEEEEEECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEE
T ss_pred ehhhhhhcccCcEEEEEEEEeecccccccccccceeecccccccCCceeecccccccceeeeeeccCCccceEEEeeecc
Confidence 99999999999 69999999999999999999999975 6888899999999999999999999999999999999999
Q ss_pred CCCeEeecCccceee-ecCCeEEEEEEeCCCccceEEEEEEeeeeEeeecccCCeEEEEEEcCCchhhHHHHHHHHHHHH
Q 004108 166 SELVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTL 244 (773)
Q Consensus 166 ~~~~~isn~~~~~~~-~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~~~~~l 244 (773)
++++|+|||++.+.. ..+++++++|..++|||+|++||++|+|..++..+.+|+++++|++|+..+..+++++.+.+++
T Consensus 159 ~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 238 (390)
T PF01433_consen 159 KDYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKAL 238 (390)
T ss_dssp TTTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHH
T ss_pred ccceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHH
Confidence 999999999998874 4468999999999999999999999999998866666799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcCccccc
Q 004108 245 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (773)
Q Consensus 245 ~~~e~~fg~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 324 (773)
++|+++||+|||++|+++|++|+|..|||||||+|+|++..++++++.++...+..+..+||||+|||||||+||++||+
T Consensus 239 ~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~ 318 (390)
T PF01433_consen 239 EYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWS 318 (390)
T ss_dssp HHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGG
T ss_pred HHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccch
Confidence 99999999999999999999999999999999999999999999998888888889999999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHhhhhCCchhhHHHHHHHHH-hhhhccccCCCCceeeecCCchhhccccccccccch
Q 004108 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKG 395 (773)
Q Consensus 325 d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg 395 (773)
|+||+||||+|++++++++.+|++.++..+..+.. .++..|+...++|+...+.++.++...|+.++|.||
T Consensus 319 d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 319 DLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 99999999999999999999999888888877665 679999999999999888889999999999999998
No 8
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-54 Score=452.50 Aligned_cols=431 Identities=25% Similarity=0.379 Sum_probs=337.2
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEEEcCCCEEEEEecCcEEeEEEeeeccCCCCccccCee-EEEecCCeEEE
Q 004108 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTK-VELVEADEILV 89 (773)
Q Consensus 11 p~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 89 (773)
+..+...|++|++++|++...++|++.+++++..+...|+|+.++|.|.+|++++... +..... -.+...+..+.
T Consensus 13 ~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~----~~~i~~~~~~~g~~~~~~ 88 (613)
T KOG1047|consen 13 YRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEP----PFRIGFRQPFLGSGQKLV 88 (613)
T ss_pred hhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCC----CCccCcccCCCCCceEEE
Confidence 4556689999999999999999999999999887766799999999999999976321 111111 11222333455
Q ss_pred EEeCCCCCcc-eEEEEEEEEeeeCCCCcceEEeee-ccCCeeeeeeeccCCcCCCCceeeccCCCCCceEEEEEEEeCCC
Q 004108 90 LEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE 167 (773)
Q Consensus 90 i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y-~~~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~ka~f~i~i~~p~~ 167 (773)
+..+.+ +.| +.+|.|.|+... +..|+-.-.- ...|+.+.|..+|+|..+||..|||+|.|+.|.||+..|.+|.+
T Consensus 89 l~~~~~-~a~~~~~l~i~y~Ts~--~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~ 165 (613)
T KOG1047|consen 89 LPAPSS-KAGERLQLLIWYETSP--SATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMG 165 (613)
T ss_pred eccccc-cccCceEEEEEEeccC--CcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCc
Confidence 554433 345 899999999753 3345533222 23477888999999999999999999999999999999999999
Q ss_pred CeEeecCccceee-ecCCeEEEEEEeCCCccceEEEEEEeeeeEeeecccCCeEEEEEEcCCchhhHHHHHH-HHHHHHH
Q 004108 168 LVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VAVKTLE 245 (773)
Q Consensus 168 ~~~isn~~~~~~~-~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~~~~l~ 245 (773)
+.+++++-...+. ...++..++|+...|+|+||+||++|+....+ -|.+-+||+.|...+.+++-+. .+.++|+
T Consensus 166 l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~e----IgpRs~VwaEp~~~~a~~~ef~~~~e~~L~ 241 (613)
T KOG1047|consen 166 LTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESRE----IGPRSRVWAEPCLLDACQEEFAGETEDFLK 241 (613)
T ss_pred ceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccc----cCCccceecchhhhHHHHHHHHhhhHHHHH
Confidence 9999887664443 33457889999999999999999999987655 3667899999999888877776 9999999
Q ss_pred HHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcCccccc
Q 004108 246 LYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (773)
Q Consensus 246 ~~e~~fg~~yP~~k~d~v~~-p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 324 (773)
.-|+.+| ||++.++|++++ |.|++|||||+.|.+.... ||-... ....+|||||||-||||+||...|.
T Consensus 242 ~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGDr--------sl~~vIaHEIAHSWtGNlVTN~sWe 311 (613)
T KOG1047|consen 242 AAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGDR--------SLVDVIAHEIAHSWTGNLVTNASWE 311 (613)
T ss_pred HHHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCCc--------chhhHHHHHhhhhhcccccccCccc
Confidence 9999999 999999999998 5899999999988777666 554433 2678999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHhhhhCCchhhHHHHHHHHH-hhhhccccCCCCceeeecCC--chhhccccccccccchhHHHHH
Q 004108 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNH--TGEIDEIFDAISYRKGASVIRM 401 (773)
Q Consensus 325 d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~--~~~~~~~f~~i~Y~Kg~~vl~m 401 (773)
+.||||||++|++..++..++|+...-........ -.-..|.+...++...-+.+ .-+++..|+.+.|.||..+|+.
T Consensus 312 hfWLNEGfTvylErrI~g~~~g~~~~~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~~ 391 (613)
T KOG1047|consen 312 HFWLNEGFTVYLERRIVGRLYGEAYRQFEALIGWRELRPSMDLFGETSEFTKLVVKLENVDPDDAFSQVPYEKGFALLFY 391 (613)
T ss_pred hhhhcccchhhhhhhhhhhhcchhHHHHHHhcChhhhhhHHHhcCCCcccchhhhhccCCChHHhhhcCchhhhhHHHHH
Confidence 99999999999999999999987432111111111 01123555555555432211 1355778999999999999999
Q ss_pred HHHhhC-HHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCC----CH--HHHHHHhhcCCCceeEEE
Q 004108 402 LQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE----PV--NKLMNSWTKQKGYPVISV 462 (773)
Q Consensus 402 L~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~----~l--~~~~~~W~~~~G~P~~~v 462 (773)
|++.+| ++.|...||.|+++|+|+.+.++||.+.|-+.... ++ +--++.|++.+|.|-..-
T Consensus 392 Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p 459 (613)
T KOG1047|consen 392 LEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKP 459 (613)
T ss_pred HHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCC
Confidence 999999 77899999999999999999999999998876432 22 235799999999997543
No 9
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=100.00 E-value=1.3e-40 Score=358.26 Aligned_cols=235 Identities=34% Similarity=0.574 Sum_probs=202.9
Q ss_pred eEEeccCceeEEEEEcCHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHhccCCHHHHHHHHHhc-cCCCchhHHHHHH
Q 004108 532 WIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASY-SEETEYTVLSNLI 610 (773)
Q Consensus 532 ~i~~N~~~~gyyrv~Yd~~~w~~l~~~L~~~~~~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l-~~E~~~~~w~~~~ 610 (773)
||++|.+++|||||+||+++|..|+++|..+.|++.+|++|++|+|+++++|+++++.+|+++.|+ ++|++|.||..++
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~ 80 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTAL 80 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 999999999999999999999999999987679999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Q 004108 611 TISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA 690 (773)
Q Consensus 611 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lR~~v~~~ac~~g~~~c~~~a~~~f~~~~~ 690 (773)
..|..+.+.+...++.....|++|+++++.++++++||+..+++++....+|..|+.+|| |+++|+++|.++|++|+.
T Consensus 81 ~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~ 158 (324)
T PF11838_consen 81 SNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhc
Confidence 999999977763334444459999999999999999999988899999999999999999 999999999999999998
Q ss_pred CCCC--CCCCchhhhhhhheeeecccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCC-CCC
Q 004108 691 DRTT--PLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-PRC 767 (773)
Q Consensus 691 ~~~~--~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~er~~ll~aL~~~~d~~ll~~~L~~~l~~~-vr~ 767 (773)
++.. ..||||+|.+|||+ ++++|+.++|++++++|++++++.+|..++.||||++||++++++|++++++. |+.
T Consensus 159 ~~~~~~~~i~~dlr~~v~~~---~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~ 235 (324)
T PF11838_consen 159 GNDSPESSIPPDLRWAVYCA---GVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRS 235 (324)
T ss_dssp TTT-TTSTS-HHHHHHHHHH---HTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-T
T ss_pred CCcccccccchHHHHHHHHH---HHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCccccc
Confidence 7433 37999999988876 45589999999999999999999999999999999999999999999999985 999
Q ss_pred Cccc
Q 004108 768 CVWT 771 (773)
Q Consensus 768 qD~~ 771 (773)
||+.
T Consensus 236 ~d~~ 239 (324)
T PF11838_consen 236 QDIR 239 (324)
T ss_dssp TTHH
T ss_pred HHHH
Confidence 9964
No 10
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=2.6e-35 Score=329.69 Aligned_cols=428 Identities=20% Similarity=0.282 Sum_probs=312.6
Q ss_pred eeEEEEEEE-ecCCCCeEEEEEEEEEEE-EcCCCEEEEEecCcEEeEEEeeeccCC---------------CCccccC--
Q 004108 16 PKRYDIRLT-PDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKV---------------SSKALEP-- 76 (773)
Q Consensus 16 p~~Y~l~l~-~d~~~~~~~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~~~~~~~~---------------~~~~~~~-- 76 (773)
-.|..+.|. +|+...++.|.++|++.. ..+...|+||++++.|.+|.|++..+. .+.....
T Consensus 27 ~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s 106 (1180)
T KOG1932|consen 27 VLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPAS 106 (1180)
T ss_pred ceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhh
Confidence 579999998 999999999999999997 455899999999999999999875110 0000000
Q ss_pred -------eeEEEecCCeEEEEEeCCCCCc-c----eEEEEEEEEeeeCCCCcceEEeeeccCCeeeeeeeccCC-cCCCC
Q 004108 77 -------TKVELVEADEILVLEFAETLPT-G----MGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFE-PADAR 143 (773)
Q Consensus 77 -------~~~~~~~~~~~l~i~l~~~l~~-g----~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~t~~e-p~~Ar 143 (773)
.-...+..++.|.|.++++++. | ..+++|.|+..=|..+--|++..|.....-..+.++..+ +.+||
T Consensus 107 ~~~~~~~~y~~l~~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar 186 (1180)
T KOG1932|consen 107 QSHFLAVQYEDLDEDNGELLIKIPKESKKVGEELKALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSAR 186 (1180)
T ss_pred hhhhHHHhhhccccCCCeEEEEcCchhhhhhhhccceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccc
Confidence 1112244568899999988543 3 456778998755555555776655333222334444444 55799
Q ss_pred ceeeccCCCCCceEEEEEEEeCCCCeEeecCccceee--ecCCeEEEEEEeCCCccceEEEEEEeeeeEeeecccCCeEE
Q 004108 144 RCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEK--VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKV 221 (773)
Q Consensus 144 ~~fPc~Dep~~ka~f~i~i~~p~~~~~isn~~~~~~~--~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v 221 (773)
.||||.|.+..+++|++.+++|+..+++|+|.+.... .+-+.++++|.-+.|+.+..+||+||+|+... ...++++
T Consensus 187 ~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~--~P~~~~i 264 (1180)
T KOG1932|consen 187 SWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYV--EPSMIDI 264 (1180)
T ss_pred eEEeecCCccccceEEEEEEecccceeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccC--CCccCcc
Confidence 9999999999999999999999999999999988762 23347899999999999999999999999773 2347899
Q ss_pred EEEEcCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHH
Q 004108 222 RVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRV 301 (773)
Q Consensus 222 ~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~ 301 (773)
..|+.|+.....+...-...++++|||+++|..|||+-+.+|++|.-..--|....|.+++.+ +||..+..+ .....
T Consensus 265 ~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~-lLy~~~iID--q~~~t 341 (1180)
T KOG1932|consen 265 THFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTS-LLYSKNIID--QTFLT 341 (1180)
T ss_pred eeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeecc-ccchHhhhh--HHHHH
Confidence 999999998888888889999999999999988999999999999876667777788888877 888876433 33446
Q ss_pred HHHHHHHHHHHHhcCCcCccccchhHHhhhHHHHHHHHHhhhhCCchhhHHHHHHHHHhhhhccccC----CCCceeeec
Q 004108 302 ATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLA----ESHPIEVEV 377 (773)
Q Consensus 302 ~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~pi~~~~ 377 (773)
...+|--||.||||-++|+..|+|.||.+|+|.|+..+++++++|..++..+.-.+.-....+|-.. .+.|+....
T Consensus 342 r~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~Pi~~s~ 421 (1180)
T KOG1932|consen 342 RRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRPISPSM 421 (1180)
T ss_pred HHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccCCCcch
Confidence 7789999999999999999999999999999999999999999998776433332222223333211 122332211
Q ss_pred C--------------CchhhccccccccccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCC
Q 004108 378 N--------------HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEP 443 (773)
Q Consensus 378 ~--------------~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~ 443 (773)
. .....+..|..-.-.|+..+.+|+++.+|.+-|.+..+..+. .++...
T Consensus 422 k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~-----------------~~~~~~ 484 (1180)
T KOG1932|consen 422 KFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLE-----------------LASKML 484 (1180)
T ss_pred hhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH-----------------hhhhhH
Confidence 1 000001111111124677777888888887776655544443 233333
Q ss_pred HHHHHHHhhcCCCceeEEEEEe
Q 004108 444 VNKLMNSWTKQKGYPVISVKVK 465 (773)
Q Consensus 444 l~~~~~~W~~~~G~P~~~v~~~ 465 (773)
++.|++.|++..|+|++.+...
T Consensus 485 ~k~~~~~Wv~~~g~~~~r~~~~ 506 (1180)
T KOG1932|consen 485 LKSFFQTWVYGLGVPILRLGQR 506 (1180)
T ss_pred HHHHHHHHHhccCCeeEEEEEE
Confidence 5778888888888888877743
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.32 E-value=1e-10 Score=124.36 Aligned_cols=303 Identities=16% Similarity=0.186 Sum_probs=181.1
Q ss_pred EEEEEEeCCCCeEeecCccceeeecCCeEEEEEEeCCCccceEEEEEEeeeeEeeecccCCeEEEEEEcCCc-hhhHHHH
Q 004108 158 FKITLDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGK-ANQGKFA 236 (773)
Q Consensus 158 f~i~i~~p~~~~~isn~~~~~~~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~-~~~~~~~ 236 (773)
+.+++.-|+ |.+.+..+.+.+... ...-..|++-.+-| +-+|.|...+-. ..|.++++-.+... ....+..
T Consensus 115 ~~~~~~~p~-wriAT~L~~~~~~~~-~F~aa~~~~lvDSP-----ve~g~~~~~~~e-~~g~ph~~~~~g~~p~~d~~~~ 186 (558)
T COG3975 115 LELTVIPPE-WRIATALPPVATGRF-VFYAASYEELVDSP-----VEAGLFELLDFE-VTGAPHTIALRGELPNFDKERL 186 (558)
T ss_pred eEEEecCcc-ceeeecCCccccCCc-eeecccHHHhcCCh-----hhccccceeeee-ccCCceeEEEeeccccccHHHH
Confidence 556665554 887777665443100 01111122211111 123434333311 12344444333222 2345667
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhc
Q 004108 237 LNVAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (773)
Q Consensus 237 l~~~~~~l~~~e~~fg~~yP~~k~d~v~~-p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (773)
.+.++++++.=-+.|| +-|+.++.+++. .+-..||||+-.-.........+ ++....+....+++||..|-|-+
T Consensus 187 ~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~l~~~r~~~----~~~~ky~~~l~llsHEyfH~WNv 261 (558)
T COG3975 187 ASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTALIYDRFGF----TDQDKYQDLLGLLSHEYFHAWNV 261 (558)
T ss_pred HHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceeccccccccccccc----cchhHHHHHHHHHHHHHHHhccc
Confidence 7888999999899999 789999887764 56667899985433322222222 11222466789999999999998
Q ss_pred CCcCccc-c----------chhHHhhhHHHHHHHHHhhhhCCchhhHHHHHH---HHHhhhhccccCCCCceeeecCCch
Q 004108 316 NLVTMEW-W----------THLWLNEGFATWVSYLAADSLFPEWKIWTQFLD---ECTEGLRLDGLAESHPIEVEVNHTG 381 (773)
Q Consensus 316 nlVt~~~-w----------~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~pi~~~~~~~~ 381 (773)
-.+.+.- | .-+|+.|||++|+..+..-.. +-.. .++++. +...++..-..+...|+.....++.
T Consensus 262 KrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRs-gl~~-~~~~l~~la~tl~~~~~~~gRl~~~laEsS~~aw 339 (558)
T COG3975 262 KRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRS-GLIS-LETYLNYLAKTLARYLNTPGRLRQSLAESSFDAW 339 (558)
T ss_pred eeccccccCCccccccCCCcceeeecCchHHHHHHHHHHh-ccCc-HHHHHHHHHHHHHHHhcCCceecccccccccchh
Confidence 8887754 2 459999999999997754332 1111 123332 2223332222222233332211110
Q ss_pred ----hhcccc-ccc--cccchhHHHHHHHHhh-----CHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHhccCCCHHHH
Q 004108 382 ----EIDEIF-DAI--SYRKGASVIRMLQNYL-----GAECFQRSLASYIKKYAC--SNAKTEDLWAALEEGSGEPVNKL 447 (773)
Q Consensus 382 ----~~~~~f-~~i--~Y~Kg~~vl~mL~~~l-----G~~~F~~~l~~yl~~~~~--~~~~~~df~~~l~~~sg~~l~~~ 447 (773)
..+..+ +.+ .|.||++|--+|...| |+..+...|+.+.+.+.. +..+++++..++++++|.++..|
T Consensus 340 ik~yr~d~ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~e~v~av~~~~tg~dl~~f 419 (558)
T COG3975 340 IKYYRPDENSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTPEDVQAVLENVTGLDLATF 419 (558)
T ss_pred HHhhcccccccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCHHHHHHHHHhhccccHHHH
Confidence 001111 122 3899999988888777 466788888888888766 66799999999999999999999
Q ss_pred HHHhhcCCCceeEEEEEeCCEEEEEEEe
Q 004108 448 MNSWTKQKGYPVISVKVKEEKLELEQSQ 475 (773)
Q Consensus 448 ~~~W~~~~G~P~~~v~~~~~~~~l~Q~r 475 (773)
|+..+++.--|.+.--.....+++++++
T Consensus 420 ~~~~i~~~~~~~l~~~l~~~gL~~~~~~ 447 (558)
T COG3975 420 FDEYIEGTEPPPLNPLLERFGLTFTPKP 447 (558)
T ss_pred HHHHhhcCCCCChhhhhhhcceEEEecC
Confidence 9999998876665433333456666654
No 12
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.18 E-value=4.4e-11 Score=109.66 Aligned_cols=106 Identities=29% Similarity=0.488 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHhcCCcCccccchhHHhhhHHHHHHHHHhhhhCCchhhHHHHHHHHHhhhhccccCCCCceeeecC
Q 004108 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVN 378 (773)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~ 378 (773)
.....+++||++|+|+++.+........|++||+|+|++... .. .+.......+..+...+-.++.....
T Consensus 23 ~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~----~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (128)
T PF13485_consen 23 DWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRI----ED------EFDEDLKQAIESGSLPPLEPLNSSFD 92 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCc----cc------hhHHHHHHHHHcCCCCChHHHhcccc
Confidence 346689999999999999998777888999999999999331 00 11111122233333222233321111
Q ss_pred CchhhccccccccccchhHHHHHHHHhhCHHHHHHHHHHH
Q 004108 379 HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASY 418 (773)
Q Consensus 379 ~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~y 418 (773)
. ...+....|.+|.+++++|....|++.|++.|++|
T Consensus 93 ~----~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 93 F----SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred c----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 33445678999999999999999999999999875
No 13
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.74 E-value=0.0019 Score=68.39 Aligned_cols=222 Identities=19% Similarity=0.227 Sum_probs=121.1
Q ss_pred cCCeEEEEEEcCC-----chh--hHHHHHH-HHH--HHHHHHHHHhCCCC-----CCCCcc------EEEe---cCC-CC
Q 004108 216 SDGIKVRVYCQVG-----KAN--QGKFALN-VAV--KTLELYKEYFAVPY-----SLPKLD------MIAI---PDF-AA 270 (773)
Q Consensus 216 ~~g~~v~v~~~~~-----~~~--~~~~~l~-~~~--~~l~~~e~~fg~~y-----P~~k~d------~v~~---p~~-~~ 270 (773)
.+|..+.||..-+ ... .++...+ ... ++.+...+.||-|+ ..+|+. +|.+ |+- ..
T Consensus 16 ~~g~~vnvWVed~e~~~~~is~~~~~~l~~~F~~~~~iYp~~~~ifG~pwg~d~d~~~~I~~~~~v~iviln~~~~~~~~ 95 (366)
T PF10460_consen 16 YDGRTVNVWVEDGEYGSNKISDAQADSLAQEFDNSGKIYPRLVEIFGEPWGSDVDGNGKIPTGQPVDIVILNFNPDGSPY 95 (366)
T ss_pred cCCcEEEEEEEcCccCccccCHHHHHHHHHHhccccccchhHHHhcCCCCCCCCCCCCcccCCCceEEEEEecCCCCCce
Confidence 5678888988765 211 2222222 222 35556677888663 233443 5655 211 11
Q ss_pred c----------------ccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhc--CCcCccc--cchhHHhh
Q 004108 271 G----------------AMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG--NLVTMEW--WTHLWLNE 330 (773)
Q Consensus 271 g----------------amE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG--nlVt~~~--w~d~WL~E 330 (773)
| .-.|.|.++|-....++.... .....+..++|||+-|+--- +.|...- -.|.||||
T Consensus 96 G~~GYF~s~d~~~~~~~~~SNe~e~~YiD~~~~~~~~~---~~~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE 172 (366)
T PF10460_consen 96 GTAGYFWSSDLYPKSSNPYSNESEYFYIDSETLYLGGN---SGPDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNE 172 (366)
T ss_pred eeeeeecHHHcccccccCCCcceeEEEEecHHhhccCC---ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 2 223445555544433322211 12345789999999998632 3444432 36999999
Q ss_pred hHHHHHHHHHhhhhCCchhhH-HHHHHHHHhhhhccccCCCCceeeecCCchhhccccccccccchhHHHHHHHHhhCHH
Q 004108 331 GFATWVSYLAADSLFPEWKIW-TQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 409 (773)
Q Consensus 331 GfA~y~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~ 409 (773)
|+|.-+|.++..+..+..... ...+..... .......+.+..- ... . -....|....++..-|....|.+
T Consensus 173 ~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~~---~~~~~~~~~l~~w-~~~---g--~~l~sYs~s~~Fg~~L~rQ~G~~ 243 (366)
T PF10460_consen 173 MLSMSAEDLYSSKIDPGYNNIRDSRIPYYNN---YTSGNYNCSLTAW-SSF---G--DSLASYSSSYSFGAYLYRQYGGD 243 (366)
T ss_pred HHHHHHHHHHhcCCCcccCccccccHHHHhh---ccccCCCcceeec-CCC---c--cccccchhHHHHHHHHHHHcChH
Confidence 999999998877764332110 010111110 0011111222111 111 1 11347999999999998888988
Q ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHh-c-cCCCHHHHHHHhhcCC
Q 004108 410 CFQRSLASYIKKYACSNAKTEDLWAALEE-G-SGEPVNKLMNSWTKQK 455 (773)
Q Consensus 410 ~F~~~l~~yl~~~~~~~~~~~df~~~l~~-~-sg~~l~~~~~~W~~~~ 455 (773)
.+++.|.. ....+.++...++.+ + .+.++.++|.+|...-
T Consensus 244 ~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~~w~~A~ 285 (366)
T PF10460_consen 244 FYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLRRWGVAL 285 (366)
T ss_pred HHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 87666651 133566776666544 4 3568999999997655
No 14
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=97.07 E-value=0.00037 Score=61.87 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhcCCcCccc-----------cchhHHhhhHHHHHHHHHhhhh
Q 004108 301 VATVVAHELAHQWFGNLVTMEW-----------WTHLWLNEGFATWVSYLAADSL 344 (773)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~-----------w~d~WL~EGfA~y~~~~~~~~~ 344 (773)
...+++||..|.|-+-.+.|.. -+.+|+-|||++|++.+++...
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~Ra 58 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRA 58 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHc
Confidence 4578999999999977766644 4678999999999998866543
No 15
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=96.87 E-value=0.12 Score=55.61 Aligned_cols=273 Identities=15% Similarity=0.134 Sum_probs=128.9
Q ss_pred EEEEEEEeeecCCCCCCCeeEEEEEEEeCc--ccc-----eeeEEeecceeEEEecccccccccCCCCCCceEEeccCce
Q 004108 468 KLELEQSQFLSSGSPGDGQWIVPITLCCGS--YDV-----CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 540 (773)
Q Consensus 468 ~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~ 540 (773)
+++++|......+...+..|.|||.+..-+ +.. ...+.++..++++.+..+. .. -...++-+.+
T Consensus 6 ~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~-------~~--PvpSllRgFS 76 (367)
T PF11940_consen 6 TLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVS-------EK--PVPSLLRGFS 76 (367)
T ss_dssp EEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES----------S----EEEESTTG-
T ss_pred EEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCC-------CC--ceeehhcCcc
Confidence 578889876555666667899999985433 222 1235678888999987642 22 4788899999
Q ss_pred eEEEEEcC--HHHHHHHHHHHHhcCCChhhhhHHH--------HHHHHHHHhc-cCCH-HHHHHHHHhccC--CCchhHH
Q 004108 541 GFYRVKYD--KDLAARLGYAIEMKQLSETDRFGIL--------DDHFALCMAR-QQTL-TSLLTLMASYSE--ETEYTVL 606 (773)
Q Consensus 541 gyyrv~Yd--~~~w~~l~~~L~~~~~~~~~r~~li--------~D~~~la~~g-~l~~-~~~l~l~~~l~~--E~~~~~w 606 (773)
.+-++.|| ++.+..|... + -.+-+|..-. .+...-..+| .... ..+++.++.+-. +-|...-
T Consensus 77 APV~l~~~~s~~eL~~L~~~---D-~D~FnRWdA~Q~L~~~~l~~~~~~~~~~~~~~~~~~~i~a~~~~L~d~~~d~a~~ 152 (367)
T PF11940_consen 77 APVKLEYDYSDEELAFLAAH---D-SDPFNRWDAAQTLATRILLALIADKQAGKPLALSAALIEAFRALLADDDLDPAFK 152 (367)
T ss_dssp SSSEEE----HHHHHHHHHH-----SSHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHH-SSS-HHHH
T ss_pred cceEecCCCCHHHHHHHHHc---C-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHcCCCCCHHHH
Confidence 99999886 3444334332 1 1233442211 1111111111 0111 124444444321 2222211
Q ss_pred HHH--HHHHHHHHHHHhccChHHH--------HHHHHHHHHHHHHHHHhcCCccC---CCCCHHHHHHHHHHHHHHHhcC
Q 004108 607 SNL--ITISYKIGRIAADARPELL--------DYLKQFFISLFQNSAEKLGWDSK---PGESHLDALLRGEIFTALALLG 673 (773)
Q Consensus 607 ~~~--~~~l~~l~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~lg~~~~---~~~~~~~~~lR~~v~~~ac~~g 673 (773)
..+ +.....|...+..-+|+.. ..+..-+...+..+|+++.-... ..+..-.+.||..++.+++..+
T Consensus 153 A~~L~LPs~~~l~~~~~~iDp~~i~~ar~~l~~~la~~l~~~l~~~y~~~~~~~~y~~~~~~~g~RaLkn~~L~yL~~~~ 232 (367)
T PF11940_consen 153 ALLLTLPSESELAEQMENIDPDAIHAAREALRRALAQALRDELLALYQALAATGPYSPDAEAAGRRALKNLCLSYLAAAD 232 (367)
T ss_dssp HHHTS---HHHHCTT-SSB-HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHTTTTT-SHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHccCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 111 1122222222211112221 12222233344445555511111 1223345899999999999999
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCCchhhhhhhheeeecccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHH
Q 004108 674 HKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIV 753 (773)
Q Consensus 674 ~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~er~~ll~aL~~~~d~~ll 753 (773)
.++..+.|.+.|+.-. + ---|-+.+.+++..-....++..+..+++|++....-+|.-.+.|.+... +.+
T Consensus 233 ~~~~~~la~~qy~~A~---n-----MTD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~LV~dKWFalQA~~~~~--~~l 302 (367)
T PF11940_consen 233 DPEAAELAQEQYKSAD---N-----MTDRLAALSALVNSDSPEREEALEDFYERWKDDPLVMDKWFALQASSPSP--DTL 302 (367)
T ss_dssp CTHHHHHHHHHHHHSS---S-----HHHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHHHHHHHHHHHHT--ST--THH
T ss_pred chHHHHHHHHHHHhCC---C-----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChHHHHHHHHHHhCCCCc--cHH
Confidence 9999999999987631 1 12233334444432112234456777777776666668888888876554 455
Q ss_pred HHHHHHhcCC
Q 004108 754 LEVLNFLLSS 763 (773)
Q Consensus 754 ~~~L~~~l~~ 763 (773)
.++-.+.-++
T Consensus 303 ~~V~~L~~Hp 312 (367)
T PF11940_consen 303 ERVKKLMQHP 312 (367)
T ss_dssp HHHHHHTTST
T ss_pred HHHHHHhcCC
Confidence 5555554444
No 16
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=96.12 E-value=0.0032 Score=56.60 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCcC---ccccchhHHhhhHHHHHHHHHh
Q 004108 303 TVVAHELAHQWFGNLVT---MEWWTHLWLNEGFATWVSYLAA 341 (773)
Q Consensus 303 ~~iaHElaHqWfGnlVt---~~~w~d~WL~EGfA~y~~~~~~ 341 (773)
.+++||.+||-.-|.=- ...| -.|+.||||+|+|-...
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~-P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADW-PRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCC-chHHHHhHHHHcCCCcc
Confidence 58999999999877421 1222 28999999999996644
No 17
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=95.89 E-value=0.2 Score=49.33 Aligned_cols=171 Identities=19% Similarity=0.256 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCCCCccEEEe--cCCCCccc----ccccceeeecccccccCCCChhHHHHHHHHHHHHH
Q 004108 236 ALNVAVKTLELYKEYFAVP-YSLPKLDMIAI--PDFAAGAM----ENYGLVTYRETALLYDDQHSAAANKQRVATVVAHE 308 (773)
Q Consensus 236 ~l~~~~~~l~~~e~~fg~~-yP~~k~d~v~~--p~~~~gam----E~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHE 308 (773)
+.....++..+..+.|-.+ .+-+..+.|.+ .++..-|- .+-.-|.++...+--.+. ....+..+..+|.||
T Consensus 26 a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~~gVA~t~gd~~~~~I~~S~~~i~~~~~--~~~~~~Ei~Gvl~HE 103 (205)
T PF04450_consen 26 AEQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDMDGVAYTSGDDDHKEIHFSARYIAKYPA--DGDVRDEIIGVLYHE 103 (205)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECCCeeEEEecCCCccEEEEeHHHHhhccc--ccchHHHHHHHHHHH
Confidence 3444555556666665433 22334444432 34321111 112356666553321111 122345689999999
Q ss_pred HHHHHhcCCcCccccchhHHhhhHHHHHHHHHhhhhCCchhhHHHHHHHHHhhhhccccCCCCceeeecCCchhhccccc
Q 004108 309 LAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFD 388 (773)
Q Consensus 309 laHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~f~ 388 (773)
++|-|=.+--.. .--||-||+|.|+-..+- +.|. ....|... ..++
T Consensus 104 ~~H~~Q~~~~~~---~P~~liEGIADyVRl~aG--~~~~--------------------~w~~p~~~---------~~wd 149 (205)
T PF04450_consen 104 MVHCWQWDGRGT---APGGLIEGIADYVRLKAG--YAPP--------------------HWKRPGGG---------DSWD 149 (205)
T ss_pred HHHHhhcCCCCC---CChhheecHHHHHHHHcC--CCCc--------------------cccCCCCC---------CCcc
Confidence 999765544221 224899999999976521 0110 01111110 1222
Q ss_pred cccccchhHHHHHHHH-hhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHH
Q 004108 389 AISYRKGASVIRMLQN-YLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS 450 (773)
Q Consensus 389 ~i~Y~Kg~~vl~mL~~-~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~ 450 (773)
-.|.-.|.+|.-|+. ..|+ .|.+-|..=+++..| ..+++|.. .+|++++++++.
T Consensus 150 -~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y---~~~~~~~~---l~G~~v~~LW~e 204 (205)
T PF04450_consen 150 -DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKY---SSDDFWKE---LLGKPVDELWAE 204 (205)
T ss_pred -cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCC---CcHhHHHH---HHCcCHHHHHhh
Confidence 368889999999998 6664 466666666666565 45666654 458899988765
No 18
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=92.58 E-value=0.47 Score=46.63 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCc-----ccccccceeeecccccc-cCCCChhHHHHHHHHHHHHHHHHHH
Q 004108 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAG-----AMENYGLVTYRETALLY-DDQHSAAANKQRVATVVAHELAHQW 313 (773)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~v~~p~~~~g-----amE~~gli~~~e~~ll~-~~~~~~~~~~~~~~~~iaHElaHqW 313 (773)
+.+++....+.+ |.+.+++.++|--+.+ .+...|-..+....+++ -+.. .....+..++|||+.|.+
T Consensus 5 i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~~---~~~~~l~~~iaHE~hH~~ 77 (195)
T PF10026_consen 5 IEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPND---YSLEELPALIAHEYHHNC 77 (195)
T ss_pred HHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCCc---ccHHHHHHHHHHHHHHHH
Confidence 344444445444 4568888766532222 11223344444443333 2221 233468899999999986
Q ss_pred hcCCcCc----cccchhHHhhhHHHHHHHHHhhhhC
Q 004108 314 FGNLVTM----EWWTHLWLNEGFATWVSYLAADSLF 345 (773)
Q Consensus 314 fGnlVt~----~~w~d~WL~EGfA~y~~~~~~~~~~ 345 (773)
--..+.. ..--|.-+.||+|.+++.....+..
T Consensus 78 r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 78 RYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred HHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 4443321 1223566899999999977665544
No 19
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.14 E-value=2.5 Score=49.24 Aligned_cols=197 Identities=18% Similarity=0.186 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHH-hccCCHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHhccChHH-
Q 004108 550 DLAARLGYAIEMKQLSETDRFGILDDHFALCM-ARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPEL- 627 (773)
Q Consensus 550 ~~w~~l~~~L~~~~~~~~~r~~li~D~~~la~-~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~- 627 (773)
.....|.+.+..++++..++++++.=+.+.+. .-.--.+.+++|++.=.-..+...+.+++-.+..+.+......+.+
T Consensus 357 ~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~ 436 (574)
T smart00638 357 PALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP 436 (574)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 35667777777788999999999887777763 3344445555665543344567888888888887766543322211
Q ss_pred ---HHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCCchhhhh
Q 004108 628 ---LDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKA 704 (773)
Q Consensus 628 ---~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lR~~v~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~ 704 (773)
...+.+|+...+....++ ++ ..-+...+..++..|++..+.. +..++.+ ....++.+|.+
T Consensus 437 ~~~~~~~~~~l~~~l~~~~~~-------~~----~~~~~~~LkaLGN~g~~~~i~~----l~~~l~~--~~~~~~~iR~~ 499 (574)
T smart00638 437 DFVLEELLKYLHELLQQAVSK-------GD----EEEIQLYLKALGNAGHPSSIKV----LEPYLEG--AEPLSTFIRLA 499 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHhc-------CC----chheeeHHHhhhccCChhHHHH----HHHhcCC--CCCCCHHHHHH
Confidence 233444444444432221 11 1235667888899999877754 3444443 33478889976
Q ss_pred hhheeeecccCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHh-CCCCCHHHHHHHHHHhcCC
Q 004108 705 AYVAVMQKVSASDRSGYESLLRVYRETDL-SQEKTRILSSL-ASCPDVNIVLEVLNFLLSS 763 (773)
Q Consensus 705 vy~~~~~~~~~g~~~~~~~l~~~y~~s~~-~~er~~ll~aL-~~~~d~~ll~~~L~~~l~~ 763 (773)
+..++-+.+..-....-+.++..|.+... ++-|..+..+| -|-++...++++.+.+..+
T Consensus 500 Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E 560 (574)
T smart00638 500 AILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKE 560 (574)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhc
Confidence 55555433334566778889999998654 45566655444 4559999999999887654
No 20
>PRK04860 hypothetical protein; Provisional
Probab=88.93 E-value=1 Score=42.46 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc--cccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 004108 236 ALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME--NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (773)
Q Consensus 236 ~l~~~~~~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE--~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (773)
+...+...+..-+++||.|+|.|+..+-. ....||+- .-+-|.+... ++.+. ....+..+|+||+||.|
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~--R~rtaG~~~l~~~~I~~Np~--ll~~~-----~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYTQ--RGTSAGTAWLQSNEIRLNPV--LLLEN-----QQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEee--cchhhcchhHhcCCeeeCHH--HHhhC-----cHHHHHhHHHHHHHHHH
Confidence 44566677778889999988877654332 22224432 2223444432 22222 33457889999999987
Q ss_pred h
Q 004108 314 F 314 (773)
Q Consensus 314 f 314 (773)
-
T Consensus 76 ~ 76 (160)
T PRK04860 76 V 76 (160)
T ss_pred H
Confidence 3
No 21
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=86.56 E-value=0.68 Score=45.93 Aligned_cols=40 Identities=33% Similarity=0.305 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhcCCcCccccchhHHhhhHHHHHHHHHhhhh
Q 004108 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (773)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 344 (773)
..++.+|-||+|||=|.- . +|.=+||+||+..|...+++.
T Consensus 195 ~~lA~LIFHELAHQk~Y~--~----~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 195 TYLASLIFHELAHQKIYV--N----NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred HHHHHHHHHHHhhheEee--c----CcchHhHHHHHHHHHHhHHHH
Confidence 358899999999997652 1 456789999999998877654
No 22
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=85.91 E-value=4.3 Score=40.12 Aligned_cols=93 Identities=20% Similarity=0.342 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHh
Q 004108 235 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (773)
Q Consensus 235 ~~l~~~~~~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (773)
.+.+.....++.|++.+|.++ +++.+=-.-. ..|....-|.|.+.-..+.+.+. -+..+|+|||||.-.
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~~--~~i~ir~~ks-rWGsc~~~~~I~ln~~L~~~P~~--------~idYVvvHEL~Hl~~ 177 (205)
T PF01863_consen 109 QAKEYLPERLKKYAKKLGLPP--PKIKIRDMKS-RWGSCSSKGNITLNWRLVMAPPE--------VIDYVVVHELCHLRH 177 (205)
T ss_pred HHHHHHHHHHHHHHHHcCCCc--ceEEEeehhh-ccccCCCCCcEEeecccccCCcc--------HHHHHHHHHHHHhcc
Confidence 345566677788888888643 3433322222 24655556778887763333332 377899999999976
Q ss_pred cCCcCccccchhHHhhhHHHHHHHHHhhhhCCchhhHHHH
Q 004108 315 GNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQF 354 (773)
Q Consensus 315 GnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~ 354 (773)
.|. -...| ..+++..|+|......
T Consensus 178 ~nH-----s~~Fw-----------~~v~~~~Pd~k~~~~~ 201 (205)
T PF01863_consen 178 PNH-----SKRFW-----------ALVEKYMPDYKERRKW 201 (205)
T ss_pred CCC-----CHHHH-----------HHHHHHCcCHHHHHHH
Confidence 553 33334 3456677887654443
No 23
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=83.18 E-value=1.1 Score=47.11 Aligned_cols=39 Identities=36% Similarity=0.423 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhcCCcCccccchhHHhhhHHHHHHHHHhhhh
Q 004108 300 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (773)
Q Consensus 300 ~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 344 (773)
.++.+|-||||||=+. .+ +|.=+||+||++.+...+.+.
T Consensus 164 ~LA~LIfHELaHq~~Y----v~--~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 164 ELARLIFHELAHQTLY----VK--GDTAFNESFATFVEREGARRW 202 (337)
T ss_pred HHHHHHHHHHhhceee----cC--CCchhhHHHHHHHHHHHHHHH
Confidence 5899999999999543 11 466789999999998876654
No 24
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=81.63 E-value=17 Score=42.90 Aligned_cols=195 Identities=15% Similarity=0.135 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHHHHH-HhccCCHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHhccC-----
Q 004108 551 LAARLGYAIEMKQLSETDRFGILDDHFALC-MARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADAR----- 624 (773)
Q Consensus 551 ~w~~l~~~L~~~~~~~~~r~~li~D~~~la-~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~----- 624 (773)
....|.+.+..+.++....+++|.-+.... +.-.--.+.+++|++.-.-..+..++.+++-.+..+.+.+....
T Consensus 396 av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~ 475 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEF 475 (618)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccccc
Confidence 455666666667888877777765555444 22222222333344332334567788888888877766553320
Q ss_pred --h---HHHHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCCc
Q 004108 625 --P---ELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPP 699 (773)
Q Consensus 625 --~---~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lR~~v~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~ 699 (773)
+ ...+.+.+++.+.+..... ..+..-+...+..++.+|++..+.. +..++.+ ....+.
T Consensus 476 ~~~~~~~~~~~~~~~l~~~l~~~~~-----------~~~~~~~~~~LkaLgN~g~~~~i~~----l~~~i~~--~~~~~~ 538 (618)
T PF01347_consen 476 CDPCSRCIIEKYVPYLEQELKEAVS-----------RGDEEEKIVYLKALGNLGHPESIPV----LLPYIEG--KEEVPH 538 (618)
T ss_dssp -----SS--GGGTHHHHHHHHHHHH-----------TT-HHHHHHHHHHHHHHT-GGGHHH----HHTTSTT--SS-S-H
T ss_pred ccccchhhHHHHHHHHHHHHHHHhh-----------ccCHHHHHHHHHHhhccCCchhhHH----HHhHhhh--ccccch
Confidence 1 1111222222222221111 1123556677888889999865544 4455554 225888
Q ss_pred hhhhhhhheeeecccCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHh-CCCCCHHHHHHHHHHhcC
Q 004108 700 DIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLS-QEKTRILSSL-ASCPDVNIVLEVLNFLLS 762 (773)
Q Consensus 700 dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~-~er~~ll~aL-~~~~d~~ll~~~L~~~l~ 762 (773)
.+|.++.-++.+.+..-.....+.++..|.+.+.. +-|..++..| -|-+....++++.+.+..
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLWN 603 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHhh
Confidence 99986655555334444567899999999987654 4555555444 465999999999887754
No 25
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=80.70 E-value=1.5 Score=40.92 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=33.2
Q ss_pred HHHHHH-HHhCCCCCCCCccEEEecCC--CCccccc-ccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhc
Q 004108 243 TLELYK-EYFAVPYSLPKLDMIAIPDF--AAGAMEN-YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (773)
Q Consensus 243 ~l~~~e-~~fg~~yP~~k~d~v~~p~~--~~gamE~-~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (773)
.++-++ .+|+-++|-++ +..-... .+|.-.. .+.|.++.. + .. ......+..+|.|||||.+..
T Consensus 6 ~~~~~n~~~F~~~l~~~~--i~w~~r~~~~~G~~~~~~~~I~ln~~-l-~~-----~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 6 RLEDASLRVFGRKLPHPK--VVWNKRLRKTGGRCLLKSAEIRLNPK-L-LT-----ENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHCCCCCCCE--EEEehhhhhhhHHhhcCCCEEEeCHH-H-Hh-----hccHHHHHhhHHHHHHHHHHH
Confidence 344444 78887777652 2222221 1232221 334444433 1 11 112235778999999999975
No 26
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=75.23 E-value=3 Score=44.32 Aligned_cols=32 Identities=38% Similarity=0.600 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCCcCccccchhHHhhhHHHHHHHHHhhhh
Q 004108 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (773)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 344 (773)
.-.++|||+|||- | ...|.=|.|+++++..+-
T Consensus 196 ~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~s 227 (318)
T PF12725_consen 196 LPFTICHELAHQL-G-----------FASEDEANFIAYLACINS 227 (318)
T ss_pred ccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhcC
Confidence 5579999999995 4 348899999999977543
No 27
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=73.09 E-value=6.8 Score=36.58 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEEEecCCCCcccccccceeeecccccccCCCC-hhHHHHHHHHHHHH
Q 004108 231 NQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFAAGAMENYGLVTYRETALLYDDQHS-AAANKQRVATVVAH 307 (773)
Q Consensus 231 ~~~~~~l~~~~~~l~~~e~~fg~~yP~~k--~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~-~~~~~~~~~~~iaH 307 (773)
..+..|...+.++.+||.+.|| .-++.. ..+++.=.+. ..+.| .....+.+.|..... ..........++||
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg-~~~~N---AfW~g~~m~yGdG~~~~f~~~~~~lDVvaH 141 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYG-KNYNN---AFWNGSQMVYGDGDGQIFKPFASSLDVVAH 141 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESES-SSTT----EEE-SSSEEEE---SSSBS-GGG-HHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCC-CCccC---ccccCCEEEEECCCCcccccCccccceeee
Confidence 3455677788999999999999 666653 3344332221 11222 111222344433211 00011113578999
Q ss_pred HHHHH
Q 004108 308 ELAHQ 312 (773)
Q Consensus 308 ElaHq 312 (773)
||+|-
T Consensus 142 EltHG 146 (150)
T PF01447_consen 142 ELTHG 146 (150)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 99995
No 28
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=71.17 E-value=9.4 Score=31.48 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCCchhhhhhhheeeecccCCCHHHHHHHHHHHHcCCCHHHHH
Q 004108 659 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 738 (773)
Q Consensus 659 ~~lR~~v~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~er~ 738 (773)
...|..++..++..+++..+....+++ .+ -++.+|..+..++.. -|+.+.++.+.+...++.+..-|.
T Consensus 14 ~~vr~~a~~~L~~~~~~~~~~~L~~~l----~d-----~~~~vr~~a~~aL~~---i~~~~~~~~L~~~l~~~~~~~vr~ 81 (88)
T PF13646_consen 14 PQVRAEAARALGELGDPEAIPALIELL----KD-----EDPMVRRAAARALGR---IGDPEAIPALIKLLQDDDDEVVRE 81 (88)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHH----TS-----SSHHHHHHHHHHHHC---CHHHHTHHHHHHHHTC-SSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHH----cC-----CCHHHHHHHHHHHHH---hCCHHHHHHHHHHHcCCCcHHHHH
Confidence 467888899999998876655554444 33 247888876655543 467778999999888877766688
Q ss_pred HHHHHhC
Q 004108 739 RILSSLA 745 (773)
Q Consensus 739 ~ll~aL~ 745 (773)
..+.|||
T Consensus 82 ~a~~aL~ 88 (88)
T PF13646_consen 82 AAAEALG 88 (88)
T ss_dssp HHHHHHH
T ss_pred HHHhhcC
Confidence 8888885
No 29
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=61.67 E-value=13 Score=36.30 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCCcCccccchhHHhhhHHHHHHHHHhhh
Q 004108 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 343 (773)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~ 343 (773)
...++|||+.|-|.- ..-----+.++-||+++.+++.+++.
T Consensus 93 ~gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~ 133 (212)
T PF12315_consen 93 TGSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLES 133 (212)
T ss_pred HhhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhh
Confidence 457899999999972 11111225789999999999987764
No 30
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=58.10 E-value=1.2e+02 Score=36.44 Aligned_cols=129 Identities=14% Similarity=0.210 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhcCCc-CccccchhHHhhhHHHHHHHHHhhhhCC---chhh-H--HHHHHHHHhhhhccccCCCCceee
Q 004108 303 TVVAHELAHQWFGNLV-TMEWWTHLWLNEGFATWVSYLAADSLFP---EWKI-W--TQFLDECTEGLRLDGLAESHPIEV 375 (773)
Q Consensus 303 ~~iaHElaHqWfGnlV-t~~~w~d~WL~EGfA~y~~~~~~~~~~~---~~~~-~--~~~~~~~~~~~~~d~~~~~~pi~~ 375 (773)
-.+-|||+|.+=+..+ .-..+.+.| |-=+|.++++..+..... .|-+ . .......+.+. .....|
T Consensus 238 W~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~----i~~~~~--- 309 (775)
T PF03272_consen 238 WGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIAL----IDNNKP--- 309 (775)
T ss_pred chhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHH----HhcCCC---
Confidence 3688999999988877 334567888 777888888776542111 1111 0 00111111110 001111
Q ss_pred ecCCchhhcccccccc-ccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCC--HHHHHHHHHhc-cCCCHHHHHHHh
Q 004108 376 EVNHTGEIDEIFDAIS-YRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAK--TEDLWAALEEG-SGEPVNKLMNSW 451 (773)
Q Consensus 376 ~~~~~~~~~~~f~~i~-Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~--~~df~~~l~~~-sg~~l~~~~~~W 451 (773)
|+... -.|=..+..|+...-|++.|+..=+.|=+. .-.+.. .-.+++-+... ++.|+.++++-|
T Consensus 310 -----------~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~-~~~~~~~~~~~i~d~l~~~~~~~D~~p~~~l~ 377 (775)
T PF03272_consen 310 -----------FDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQL-NTNGFNPNDHQIFDWLASLYSGYDFTPYFQLV 377 (775)
T ss_pred -----------cccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-ccCCCCcccccHHHHHHHhhcCCchHhHHHHh
Confidence 22211 235445555888889999998887777665 222222 22333444555 899999999988
No 31
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=57.35 E-value=33 Score=31.86 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=33.7
Q ss_pred cccCeeEEEecCCeEEEEEeCCCCCcceEEEEEEEEeeeCCCCcceEE
Q 004108 73 ALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGFYR 120 (773)
Q Consensus 73 ~~~~~~~~~~~~~~~l~i~l~~~l~~g~~~l~i~y~g~~~~~~~G~y~ 120 (773)
.+....+..+.++..+.|.+++|++|| -+++|.+.+.-+....|.|.
T Consensus 76 ~ipl~~v~~~~~~~~i~I~f~~PV~pG-~tv~V~l~~v~NP~~~G~Y~ 122 (146)
T PF10989_consen 76 SIPLAEVEWDEDGRTITITFDEPVPPG-TTVTVVLSPVRNPRSGGTYQ 122 (146)
T ss_pred ccCceEEEEcCCCCEEEEEeCCCCCCC-CEEEEEEEeeeCCCCCCeEE
Confidence 334466888899999999999999999 44555555544555567664
No 32
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=56.92 E-value=8.2 Score=38.63 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCCCCCCccEEEecCCCCccccc--ccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcCc
Q 004108 243 TLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN--YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 320 (773)
Q Consensus 243 ~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE~--~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~ 320 (773)
.++-+.+..|.+.|.+++-++-.|...+.++.. ...|..... ++.. .+...+..++|||++|-.-++....
T Consensus 36 ~v~~l~~~~~~~~~~~~v~v~~~~~~NA~~~g~~~~~~I~v~~~-ll~~------~~~~el~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 36 IVEELARRAGLGIPPPRVYVIDSPSPNAFATGGGPRKRIVVTSG-LLES------LSEDELAAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp HHHHHHHHHHCTSS--EEEEE--SSEEEEEETTTC--EEEEEHH-HHHH------SSHHHHHHHHHHHHHHHHTTHCCCC
T ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCCcEEEEccCCCcEEEEeCh-hhhc------ccHHHHHHHHHHHHHHHHcCCcchH
Confidence 333333444556665555555444432222211 112444444 4421 1334688999999999998765544
No 33
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=56.80 E-value=12 Score=41.10 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=61.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEEEecCCCCcccccccceeeecccccccCCCChh-HHHHHHHH
Q 004108 227 VGKANQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAA-ANKQRVAT 303 (773)
Q Consensus 227 ~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k--~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~-~~~~~~~~ 303 (773)
++....+..|-..+.+..+||.+.||. --++. +.++..--| | -++.-.......|+|....... ........
T Consensus 265 ~~~~~a~~dAh~~~g~vyD~yk~~fgr-~S~Dn~g~~l~s~vHy--G--~~ynNAfWdG~qMvyGDGDG~~f~~~S~sLD 339 (507)
T COG3227 265 PSSDEAAVDAHYNAGKVYDYYKNTFGR-NSYDNNGMPLVSTVHY--G--KNYNNAFWDGDQMVYGDGDGSFFTPFSGSLD 339 (507)
T ss_pred ccchhhhHHHHhhcchHHHHHHHHhcc-cCcCCCCCceEEEEee--c--cccccccccCceeEeecCCcceecccccccc
Confidence 344445566777889999999999993 34433 334433222 2 1222233333445554432111 01111246
Q ss_pred HHHHHHHHHHhc---CCcCccccchhHHhhhHHHHHHHHHhhhh
Q 004108 304 VVAHELAHQWFG---NLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (773)
Q Consensus 304 ~iaHElaHqWfG---nlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 344 (773)
++||||.|---. +|+.-..- ==|||+|+.-+.-++....
T Consensus 340 VvAHElTHGvtq~tA~L~Y~~qs--GALNEsfSDvfG~~i~~~~ 381 (507)
T COG3227 340 VVAHELTHGVTQQTAGLIYRGQS--GALNESFSDVFGTLIEQYV 381 (507)
T ss_pred eehhhhcchhhhhccCceecCCC--CchhhHHHHHHHHHHHHHh
Confidence 899999995443 44443322 2489999999986554433
No 34
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=56.47 E-value=11 Score=32.98 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhcCCc
Q 004108 301 VATVVAHELAHQWFGNLV 318 (773)
Q Consensus 301 ~~~~iaHElaHqWfGnlV 318 (773)
...+++|||+|.+++..-
T Consensus 42 ~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 42 QRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 467999999999998654
No 35
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=53.40 E-value=96 Score=33.63 Aligned_cols=118 Identities=18% Similarity=0.234 Sum_probs=75.3
Q ss_pred hhhhhHHHHHHHHHHHhc-cCCHHHHHHHHHhccCCCch--------hHHHHH----HHHHHHHHHHHhccChHHHH-HH
Q 004108 566 ETDRFGILDDHFALCMAR-QQTLTSLLTLMASYSEETEY--------TVLSNL----ITISYKIGRIAADARPELLD-YL 631 (773)
Q Consensus 566 ~~~r~~li~D~~~la~~g-~l~~~~~l~l~~~l~~E~~~--------~~w~~~----~~~l~~l~~~~~~~~~~~~~-~~ 631 (773)
+.+|.++|.|+..-..++ -++|..-|.+++.-.+|-.+ .+|... ...|..|.+.+... |+..+ .+
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~-p~l~nLl~ 390 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDEN-PELANLLL 390 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcC-cchhhhhc
Confidence 689999999996555544 57999999998887776554 445443 22344555555432 22222 13
Q ss_pred HHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHcCCCCCCCCchhhhh
Q 004108 632 KQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRKA 704 (773)
Q Consensus 632 ~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lR~~v~~~ac~~g~~-~c~~~a~~~f~~~~~~~~~~~i~~dlr~~ 704 (773)
..|+.+++.. ....+|.. +..|...|.+ +|...|...|+.|.. ..+|++|-++
T Consensus 391 ~pyF~~~~~~---------------~~~~~R~v-V~~a~~~giP~P~~ssalsy~Dsyr~----~~lpaNLiQA 444 (473)
T COG0362 391 APYFKSILEE---------------YQQSLRRV-VAYAVEAGIPVPAFSSALSYYDSYRT----ARLPANLIQA 444 (473)
T ss_pred CHHHHHHHHH---------------HHHHHHHH-HHHHHhcCCCchHHHHHHHHHHHhhh----ccccHHHHHH
Confidence 3444444331 23455654 4567788887 999999999999964 3578887663
No 36
>PRK04351 hypothetical protein; Provisional
Probab=53.11 E-value=16 Score=34.09 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 004108 298 KQRVATVVAHELAHQW 313 (773)
Q Consensus 298 ~~~~~~~iaHElaHqW 313 (773)
...+..+|+|||+|-.
T Consensus 58 ~~~l~~vv~HElcH~~ 73 (149)
T PRK04351 58 LEELIGIIKHELCHYH 73 (149)
T ss_pred HHHHHhhHHHHHHHHH
Confidence 4568899999999953
No 37
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=52.89 E-value=94 Score=31.17 Aligned_cols=93 Identities=20% Similarity=0.314 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 004108 234 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (773)
Q Consensus 234 ~~~l~~~~~~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (773)
+.+.+.....+..|.+.+|.++.--++. ..-.. .|.--..|-|.+... +..- ...-+..+++||+||-=
T Consensus 119 ~~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~k~~-WGScs~~~~i~~~~~-l~~~-------p~~~i~YVvvHELaHLk 187 (223)
T COG1451 119 EILREILEIRLKEYAKKLGVPPRAIKLK--NMKRR-WGSCSKAGEIRFNWR-LVMA-------PEEVIDYVVVHELAHLK 187 (223)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceeee--eccce-eeeecCCCcEEeehh-hhcC-------CHHHHHHHHHHHHHHHh
Confidence 3456677777888899999766532222 11111 233333333444433 1111 12347789999999998
Q ss_pred hcCCcCccccchhHHhhhHHHHHHHHHhhhhCCchhhHHH
Q 004108 314 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 353 (773)
Q Consensus 314 fGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~ 353 (773)
..|. ++ ..| ..++.++|++.....
T Consensus 188 e~nH-s~----~Fw-----------~lv~~~~P~~~~~~~ 211 (223)
T COG1451 188 EKNH-SK----RFW-----------RLVEKYMPDYRAAKR 211 (223)
T ss_pred hhhc-cH----HHH-----------HHHHHHCCChHHHHH
Confidence 8872 22 333 345667788765544
No 38
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=52.61 E-value=17 Score=39.95 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=32.4
Q ss_pred CCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhc
Q 004108 256 SLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (773)
Q Consensus 256 P~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (773)
|-..++++.|-+-...|--.+|--++--+.++...+ +...++.+||||++|-==+
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae-----~esElagViAHEigHv~qr 144 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE-----NESELAGVIAHEIGHVAQR 144 (484)
T ss_pred CCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC-----CHHHHHHHHHHHHHHHhhh
Confidence 344577888866555555555544333333333222 2345899999999996433
No 39
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=51.59 E-value=75 Score=27.07 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=32.3
Q ss_pred CCCEEEEEec-CcE--EeEEEeeeccCCCCccccCeeEEEecCCeEEEEEeCCCCCcceEEEEEEEEe
Q 004108 45 DTKFIVLNAA-DLT--INNRSVSFTNKVSSKALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEG 109 (773)
Q Consensus 45 ~~~~i~L~~~-~l~--i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~l~~g~~~l~i~y~g 109 (773)
+...|.|... .++ ...+.+.+.++ ..+.......+.....+.+.++.+|++|.|+|.-+--+
T Consensus 18 ~P~~v~L~F~e~v~~~~s~v~v~~~~g---~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs 82 (97)
T PF04234_consen 18 APEEVTLTFSEPVEPGFSSVTVTDPDG---KRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVS 82 (97)
T ss_dssp --SSEEEEESS---CCC-EEEEEEEEE---TTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEE
T ss_pred CCCEEEEEeCCCCccCccEEEEEcCCC---ceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEe
Confidence 3456777665 244 56677665322 12222333344456789999999999999987655443
No 40
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=50.47 E-value=1e+02 Score=33.65 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=25.4
Q ss_pred HHhhhHHHHHHHHHhhhhCCchhhHHHHHHHHH
Q 004108 327 WLNEGFATWVSYLAADSLFPEWKIWTQFLDECT 359 (773)
Q Consensus 327 WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~ 359 (773)
=+|||.|+|..+.++.+++.+...-..+..+.+
T Consensus 269 VMNEGWAtfWHytiln~lydE~~~~~~~~lEfL 301 (495)
T COG2719 269 VMNEGWATFWHYTILNHLYDEGKLTERAMLEFL 301 (495)
T ss_pred HhhhhHHHHHHHHHHHhhhhhcccChHHHHHHH
Confidence 489999999999999988877665555544433
No 41
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=49.78 E-value=12 Score=35.13 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 004108 298 KQRVATVVAHELAHQWFG 315 (773)
Q Consensus 298 ~~~~~~~iaHElaHqWfG 315 (773)
...+..+|.|||+|.|..
T Consensus 57 ~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 57 EEELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 446889999999999974
No 42
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=49.39 E-value=26 Score=36.86 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=41.7
Q ss_pred HHHHHHHhCCCCCCCCccEEEecCCCCcccccc---cceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcC
Q 004108 244 LELYKEYFAVPYSLPKLDMIAIPDFAAGAMENY---GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (773)
Q Consensus 244 l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE~~---gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (773)
+.-....-|++ +.+++.++-.|...+-++... |.|...+. ++- . .+...+..+++||++|.=-++.+.
T Consensus 105 v~~~a~~~~~~-~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~g-Ll~-~-----l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 105 VAELARQAGIP-HMPEVYILETPQPNAFALGGGPKNGRVVVTTG-LLD-L-----LNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHHHHHCCCC-CCCeeEEecCCCccceecCCCCCCeeEEecHH-HHh-h-----CCHHHHHHHHHHHHHHHhcccHHH
Confidence 33344455533 246677666665555555553 67776665 332 1 133468999999999988776554
No 43
>PRK05457 heat shock protein HtpX; Provisional
Probab=48.67 E-value=34 Score=35.79 Aligned_cols=68 Identities=28% Similarity=0.445 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCC---cccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 004108 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAA---GAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (773)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~v~~p~~~~---gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (773)
..+.++-+.+..|+ |.|++-++-.+...+ |.-.+-+.|.+... ++-. -+..++..++|||++|.=-|+
T Consensus 79 L~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~~------L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 79 LVETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LLQN------MSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hhhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 34555666777776 567776664433222 22222334555543 2211 123468999999999976654
No 44
>PRK04897 heat shock protein HtpX; Provisional
Probab=45.44 E-value=44 Score=35.24 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCccc---ccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 004108 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAM---ENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (773)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~v~~p~~~~gam---E~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (773)
..+.++-+.+..|+ |.|++-++-.+...+-+. .+-+.|.+... ++-. -+..++..++|||++|-=-|+
T Consensus 82 L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~g-Ll~~------l~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 82 LWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTG-LLAI------MNREELEGVIGHEISHIRNYD 152 (298)
T ss_pred HHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehH-HHhh------CCHHHHHHHHHHHHHHHhcCC
Confidence 45566667777776 566776554332222121 12234555443 2211 123568999999999965443
No 45
>PRK09687 putative lyase; Provisional
Probab=45.41 E-value=3.8e+02 Score=27.94 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCCchhhhhhhheeeecccCCCHHHHHHHHHHHHcCCCHHHHHH
Q 004108 660 LLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTR 739 (773)
Q Consensus 660 ~lR~~v~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~er~~ 739 (773)
..|..++..++..+++..+...... +++ -++++|.+.-.++.. +..++...-+.|..... ..+..-|..
T Consensus 143 ~VR~~a~~aLg~~~~~~ai~~L~~~----L~d-----~~~~VR~~A~~aLg~-~~~~~~~~~~~L~~~L~-D~~~~VR~~ 211 (280)
T PRK09687 143 NVRFAVAFALSVINDEAAIPLLINL----LKD-----PNGDVRNWAAFALNS-NKYDNPDIREAFVAMLQ-DKNEEIRIE 211 (280)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHH----hcC-----CCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhc-CCChHHHHH
Confidence 4555555555666655444333222 222 123455432212111 11223344444444442 223444555
Q ss_pred HHHHhCCCCCHHHHHHHHHHh
Q 004108 740 ILSSLASCPDVNIVLEVLNFL 760 (773)
Q Consensus 740 ll~aL~~~~d~~ll~~~L~~~ 760 (773)
.+.|||...++..+..+++.+
T Consensus 212 A~~aLg~~~~~~av~~Li~~L 232 (280)
T PRK09687 212 AIIGLALRKDKRVLSVLIKEL 232 (280)
T ss_pred HHHHHHccCChhHHHHHHHHH
Confidence 666666666665555555544
No 46
>PRK03982 heat shock protein HtpX; Provisional
Probab=45.18 E-value=51 Score=34.53 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc-----cccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHh
Q 004108 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME-----NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (773)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE-----~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (773)
..+.++-+.+..|+| .+++-++ ++-...|+- .-|.|...+. |+- . -+..++..++|||++|-=-
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~--~~~~~NAfa~G~~~~~~~V~vt~g-Ll~-~-----l~~~El~AVlAHElgHi~~ 138 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIV--PTQTPNAFATGRDPKHAVVAVTEG-ILN-L-----LNEDELEGVIAHELTHIKN 138 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEE--eCCCcceEEeccCCCCeEEEeehH-HHh-h-----CCHHHHHHHHHHHHHHHHc
Confidence 445555566667764 4555444 332222222 1234444444 321 1 1345689999999999765
Q ss_pred cC
Q 004108 315 GN 316 (773)
Q Consensus 315 Gn 316 (773)
++
T Consensus 139 ~h 140 (288)
T PRK03982 139 RD 140 (288)
T ss_pred CC
Confidence 54
No 47
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=43.74 E-value=63 Score=32.35 Aligned_cols=118 Identities=8% Similarity=0.012 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHHHhccCCHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhcC
Q 004108 568 DRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLG 647 (773)
Q Consensus 568 ~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg 647 (773)
-|.+++.=...+.+.|.++.+.+.+++..|-.|-+..|-.......+.+.+.++..+.. ...+.+.+=+.+..+..+ +
T Consensus 4 kr~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~~~-~~~~ldLlP~~Ls~L~~~-~ 81 (223)
T PF14675_consen 4 KRFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGDNK-NGKWLDLLPKCLSALSAS-E 81 (223)
T ss_dssp HHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS---S--STTTTHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCcc-cchHHHHHHHHHHHHhcC-c
Confidence 46778888888999999999999999999999999999888888877776666532211 112333333333332222 1
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 004108 648 WDSKPGESHLDALLRGEIFTALALLGH-KETLNEASKRFHA 687 (773)
Q Consensus 648 ~~~~~~~~~~~~~lR~~v~~~ac~~g~-~~c~~~a~~~f~~ 687 (773)
--...++...-...+..++.-.|...= +.|+-....+|++
T Consensus 82 ~i~~~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd 122 (223)
T PF14675_consen 82 SINYNGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRD 122 (223)
T ss_dssp --SSSS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhc
Confidence 111112223446788888888887763 3555555555554
No 48
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=43.13 E-value=17 Score=35.27 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 004108 296 ANKQRVATVVAHELAHQWFGNL 317 (773)
Q Consensus 296 ~~~~~~~~~iaHElaHqWfGnl 317 (773)
-....+..++.|||||.++|+-
T Consensus 77 l~~~~i~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 77 LPYETILGTMLHELAHNVHGPH 98 (186)
T ss_pred eeHHHHHHHHHHHHHhcccCCc
Confidence 3445689999999999999873
No 49
>PRK02870 heat shock protein HtpX; Provisional
Probab=43.08 E-value=49 Score=35.46 Aligned_cols=63 Identities=25% Similarity=0.352 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCCCCCccEEEecCCCCcccc---cccceeeecccccccCCCChhHHHHHHHHHHHHHHHHH
Q 004108 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 312 (773)
Q Consensus 242 ~~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 312 (773)
++++-+....|+|+ .|++-++-.+...+-++. .-+.|...+. ++- . -+...+..++|||++|-
T Consensus 119 ~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~G-LL~-~-----L~~dEL~aVlAHELgHi 184 (336)
T PRK02870 119 NVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTG-LLE-K-----LDRDELQAVMAHELSHI 184 (336)
T ss_pred HHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehH-Hhh-h-----CCHHHHHHHHHHHHHHH
Confidence 44455555567543 345554433322222322 2245555554 331 1 13456899999999996
No 50
>PRK01345 heat shock protein HtpX; Provisional
Probab=42.80 E-value=54 Score=34.88 Aligned_cols=68 Identities=28% Similarity=0.273 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCccccc---ccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 004108 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (773)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (773)
..+.++-+.+..|+| .+++-++-.+...+-+... -+.|.+.+. |+-. .+..++..++|||++|.==++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~g-LL~~------L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTG-LLQR------LSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 445666777778875 4565544333222222221 124555444 3321 123468999999999986554
No 51
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=40.89 E-value=18 Score=30.97 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHh
Q 004108 300 RVATVVAHELAHQWF 314 (773)
Q Consensus 300 ~~~~~iaHElaHqWf 314 (773)
....+++||++|-|=
T Consensus 78 GC~~TL~HEL~H~WQ 92 (141)
T PHA02456 78 GCRDTLAHELNHAWQ 92 (141)
T ss_pred chHHHHHHHHHHHHh
Confidence 356789999999993
No 52
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=40.00 E-value=97 Score=30.12 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q 004108 300 RVATVVAHELAHQW 313 (773)
Q Consensus 300 ~~~~~iaHElaHqW 313 (773)
..+.++||||+|++
T Consensus 130 ~~a~~~AHElGH~l 143 (194)
T cd04269 130 LFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHhhc
Confidence 46789999999996
No 53
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=39.05 E-value=20 Score=34.44 Aligned_cols=13 Identities=46% Similarity=0.527 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 004108 301 VATVVAHELAHQW 313 (773)
Q Consensus 301 ~~~~iaHElaHqW 313 (773)
-..++||||+||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 4567999999998
No 54
>PRK03072 heat shock protein HtpX; Provisional
Probab=38.89 E-value=61 Score=33.99 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc-cc--cceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhc
Q 004108 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME-NY--GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (773)
Q Consensus 239 ~~~~~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE-~~--gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (773)
...+.++-+.+..|+ |.|++-++-.+...+-+.. ++ +.+...+. ++- . -+...+..++|||++|-=-|
T Consensus 71 ~L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll~-~-----l~~~El~aVlAHElgHi~~~ 141 (288)
T PRK03072 71 AMYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-ILQ-I-----LNERELRGVLGHELSHVYNR 141 (288)
T ss_pred HHHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HHH-h-----CCHHHHHHHHHHHHHHHhcC
Confidence 345666677777886 4667655543332211111 11 12333333 331 1 12356899999999996544
Q ss_pred C
Q 004108 316 N 316 (773)
Q Consensus 316 n 316 (773)
+
T Consensus 142 d 142 (288)
T PRK03072 142 D 142 (288)
T ss_pred C
Confidence 3
No 55
>PRK02391 heat shock protein HtpX; Provisional
Probab=38.15 E-value=72 Score=33.60 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc---cccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 004108 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (773)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (773)
..+.++-+.+..|+| .|++-++-.+...+-+.. +-+.|.+.+. ++-. -+..++..++|||++|--=++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~~------L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTG-LMRR------LDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 345555666777764 556665544332222221 2234544443 3211 123458899999999976654
No 56
>PRK03001 M48 family peptidase; Provisional
Probab=37.50 E-value=55 Score=34.19 Aligned_cols=68 Identities=21% Similarity=0.241 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCC---CcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 004108 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFA---AGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (773)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~k~d~v~~p~~~---~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (773)
..+.++-+.+..|+|. |++-++-.+... .|.-.+.+.|...+. ++- . -+..++..++|||++|-=-++
T Consensus 69 L~~~v~~la~~~g~~~--p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll~-~-----l~~~El~aVlAHElgHi~~~h 139 (283)
T PRK03001 69 FYRMVRELAQRAGLPM--PKVYLINEDQPNAFATGRNPEHAAVAATTG-ILR-V-----LSEREIRGVMAHELAHVKHRD 139 (283)
T ss_pred HHHHHHHHHHHcCCCC--CeEEEecCCCcceEEecCCCCCeEEEecHH-HHh-h-----CCHHHHHHHHHHHHHHHhCCC
Confidence 4456666677788654 455443222111 111111233544444 321 1 123568999999999975543
No 57
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.70 E-value=99 Score=36.13 Aligned_cols=102 Identities=17% Similarity=0.245 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHcCCCCCCCCchhhh-hhhheeeecccCCCHHHHHHHHHHHHc
Q 004108 653 GESHLDALLRGEIFTALAL-LGHKETLNEASKRFHAFLADRTTPLLPPDIRK-AAYVAVMQKVSASDRSGYESLLRVYRE 730 (773)
Q Consensus 653 ~~~~~~~~lR~~v~~~ac~-~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~-~vy~~~~~~~~~g~~~~~~~l~~~y~~ 730 (773)
.|+.-.+..|.+.++.||- +|.+ +.|..+-++.+.+ -+|-+|. -+|..++.-+.+|+.....+|+.--.+
T Consensus 494 ~ETQHeki~RGl~vGiaL~~ygrq---e~Ad~lI~el~~d-----kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs 565 (929)
T KOG2062|consen 494 QETQHEKIIRGLAVGIALVVYGRQ---EDADPLIKELLRD-----KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS 565 (929)
T ss_pred hhhhHHHHHHHHHHhHHHHHhhhh---hhhHHHHHHHhcC-----CchhhhhhhHHHHHHHHhccCchhhHHHhhccccc
Confidence 3445568899999998874 3443 2555555555544 2566774 455555555567888889998887655
Q ss_pred CCCHHHHHHHHHHhC--CCCCHHHHHHHHHHhcC
Q 004108 731 TDLSQEKTRILSSLA--SCPDVNIVLEVLNFLLS 762 (773)
Q Consensus 731 s~~~~er~~ll~aL~--~~~d~~ll~~~L~~~l~ 762 (773)
..+.+-|+...-||| |++||+.+-+++.++-.
T Consensus 566 D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse 599 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE 599 (929)
T ss_pred ccchHHHHHHHHHheeeEecChhhchHHHHHHhh
Confidence 555666777888887 89999999998887643
No 58
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=34.88 E-value=1.9e+02 Score=31.20 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=47.9
Q ss_pred HHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHH-HH---------
Q 004108 243 TLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELA-HQ--------- 312 (773)
Q Consensus 243 ~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEla-Hq--------- 312 (773)
+=++..+|++ .. --++.+...++..++||-.-+-|.++.+.. ....++..++.||+. |.
T Consensus 118 ~~~~~~~y~~-~~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~~---------fs~~~l~~L~~HEigvH~lt~~Ng~~Q 186 (349)
T PF08014_consen 118 LQERLKKYFG-KE-GFEVKVELSDDLLARAMVSGDRLKINKNAM---------FSERDLEALLHHEIGVHLLTTLNGRAQ 186 (349)
T ss_pred HHHHHHHHhc-cc-CceEEEEEcCCcchhhcccCCeeEEcCCCC---------cCHHHHHHHHHHhhhhhhccccccccC
Confidence 3345566666 33 224555555778778876555555554421 134468899999994 42
Q ss_pred ---HhcCCcCccccchhHHhhhHHHHHHHHH
Q 004108 313 ---WFGNLVTMEWWTHLWLNEGFATWVSYLA 340 (773)
Q Consensus 313 ---WfGnlVt~~~w~d~WL~EGfA~y~~~~~ 340 (773)
|++...-+. .=..||+|.+.|++.
T Consensus 187 Pl~~l~~Glp~~----~~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 187 PLKILSLGLPGY----TPTQEGLAVLSEYLS 213 (349)
T ss_pred CcHHhCCCCCCC----CCCchHHHHHHHHHh
Confidence 332211111 123799999999774
No 59
>PRK01265 heat shock protein HtpX; Provisional
Probab=34.26 E-value=76 Score=33.80 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCccccc---ccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhc
Q 004108 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (773)
Q Consensus 241 ~~~l~~~e~~fg~~yP~~k~d~v~~p~~~~gamE~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (773)
.+.++-+.+..|+ |.|++-++-.+...+-+... -+-|...+. ++- . -+...+..++|||++|-=-+
T Consensus 86 ~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll~-~-----l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 86 YSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAGKRIAITLP-LLK-I-----LNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCCCEEEEehH-HHh-h-----CCHHHHHHHHHHHHHHHHcc
Confidence 4555666677776 45666555433221112111 134444443 321 1 13356899999999995433
No 60
>cd00244 AlgLyase Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond.
Probab=34.13 E-value=6e+02 Score=27.11 Aligned_cols=123 Identities=11% Similarity=0.098 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccC-CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc--CCCCCCCCchh
Q 004108 625 PELLDYLKQFFISLFQNSAEKLGWDSK-PGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA--DRTTPLLPPDI 701 (773)
Q Consensus 625 ~~~~~~~~~~~~~l~~~~~~~lg~~~~-~~~~~~~~~lR~~v~~~ac~~g~~~c~~~a~~~f~~~~~--~~~~~~i~~dl 701 (773)
++....++.++.+++.-+....+-.+. ...+|. ..--..|...|...|.++..+.+.+.|+.-.. .+++ ..|-++
T Consensus 148 ~~d~~~i~~Wf~~~l~wl~s~~~~~e~~~~NNHg-yWya~qVaa~A~~tg~~~l~~~a~~~~~~~~~QI~~DG-sqP~EL 225 (339)
T cd00244 148 TEQAERIEKWFARVADQVVSDWSGLPLKKINNHS-YWAAWSVMATGVATNRRDLFDWAVGEYKVAAGQVDEDG-FLPNEL 225 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcCchhhccCcH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhcccC-CCcHHH
Confidence 455678889998888876655443221 122232 24445677788889999999999988876432 1122 366665
Q ss_pred hh----hhhheee--------ecccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHH
Q 004108 702 RK----AAYVAVM--------QKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVL 757 (773)
Q Consensus 702 r~----~vy~~~~--------~~~~~g~~~~~~~l~~~y~~s~~~~er~~ll~aL~~~~d~~ll~~~L 757 (773)
.+ ..|..+. ..++..+.+-| ..+..+-...+-..++.++||+.+.++-
T Consensus 226 aR~tRslhYs~FnL~al~~iA~lAe~~GvDLw--------~~ng~sL~rl~~fvia~~~dP~~~~~~a 285 (339)
T cd00244 226 KRRQRALAYHNYALPPLAMIAEFAQRNGVDLR--------KENGGALHRLAKRVLAGVKDPDLFKEYA 285 (339)
T ss_pred hhhhhhhHHHhhhHHHHHHHHHHHHHcCCCcc--------ccCcHHHHHHHHHHHhhccCcHHHHHhc
Confidence 54 3333321 11112222222 3344444444556778888888876543
No 61
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=33.22 E-value=1.6e+02 Score=27.41 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=24.7
Q ss_pred eEEEEEEcCCch---hhHHHHHHHHHHHHHHHHHHhCCCC
Q 004108 219 IKVRVYCQVGKA---NQGKFALNVAVKTLELYKEYFAVPY 255 (773)
Q Consensus 219 ~~v~v~~~~~~~---~~~~~~l~~~~~~l~~~e~~fg~~y 255 (773)
.++++|..+... .......+.+.+++..+++..++.+
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~F 41 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLKF 41 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeEE
Confidence 467788777543 2344567788888888888765444
No 62
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=32.75 E-value=1.3e+02 Score=27.13 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=34.4
Q ss_pred CEEEEEecC---cEEeEEEeeeccCCCCccccCeeEEEecCC-eEEEEEeCCCCCcceEEEEEEEEe
Q 004108 47 KFIVLNAAD---LTINNRSVSFTNKVSSKALEPTKVELVEAD-EILVLEFAETLPTGMGVLAIGFEG 109 (773)
Q Consensus 47 ~~i~L~~~~---l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~l~~g~~~l~i~y~g 109 (773)
..|.|+..+ ..+..+.+.+.++. .+.......+..+ ..++|.++.+|++|.|+|.-+..+
T Consensus 47 ~~i~L~Fse~ve~~fs~~~l~~~d~~---~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS 110 (127)
T COG2372 47 AAITLEFSEGVEPGFSGAKLTGPDGE---EVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVS 110 (127)
T ss_pred eeEEEecCCccCCCcceeEEECCCCC---ccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEe
Confidence 355666542 33355666543221 1122222222322 469999999999999998877664
No 63
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.65 E-value=4.4e+02 Score=29.42 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=44.6
Q ss_pred EecCCCCeEEEEEEEEEEEEcC--CCEEEEEec-----CcEEeEEEeeeccCCCCccccCeeEEEecCCeEEEEEeCCCC
Q 004108 24 TPDLTSCKFGGSVAIDVDVVGD--TKFIVLNAA-----DLTINNRSVSFTNKVSSKALEPTKVELVEADEILVLEFAETL 96 (773)
Q Consensus 24 ~~d~~~~~~~G~v~I~~~~~~~--~~~i~L~~~-----~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~l 96 (773)
.+|+.+....=++.|++++..+ .+...|-.. .+..-++...+.............+.-....+...|.|++||
T Consensus 10 ~idl~~~~vk~~~~i~i~N~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~pl 89 (432)
T PF04597_consen 10 TIDLSKSYVKETIEITIKNIGDEPVSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVNSGSEIKYYEITLPKPL 89 (432)
T ss_pred EEEccCcEEEEEEEEEEEECCCCCceEEEEEECchhhccEEEEEEEECCCccccccccccccccCCCCcceEEEECCCCC
Confidence 4566666666677777776544 344444333 222233333221110000001112222223356899999999
Q ss_pred Ccc-eEEEEEEEEe
Q 004108 97 PTG-MGVLAIGFEG 109 (773)
Q Consensus 97 ~~g-~~~l~i~y~g 109 (773)
+|| +.+|.+.|.-
T Consensus 90 ~~~~~~~l~v~~~~ 103 (432)
T PF04597_consen 90 APGEKVTLTVEYVL 103 (432)
T ss_pred CCCCEEEEEEEEEe
Confidence 999 8888887763
No 64
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=32.48 E-value=60 Score=26.49 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=46.4
Q ss_pred CchhhhhhhheeeecccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC
Q 004108 698 PPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS 763 (773)
Q Consensus 698 ~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~er~~ll~aL~~~~d~~ll~~~L~~~l~~ 763 (773)
++..|..+..+++ +.++.+....+.+.. +..++.-|.....||+...++..+..+..++.++
T Consensus 13 ~~~vr~~a~~~L~---~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 13 DPQVRAEAARALG---ELGDPEAIPALIELL-KDEDPMVRRAAARALGRIGDPEAIPALIKLLQDD 74 (88)
T ss_dssp SHHHHHHHHHHHH---CCTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHH---HcCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 5777765444433 356667777888877 5678889999999999999999888888877664
No 65
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=32.22 E-value=82 Score=25.14 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=39.5
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCC
Q 004108 395 GASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE 442 (773)
Q Consensus 395 g~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~ 442 (773)
=+.++.+|...++.+.+ .-|..++++++-+-++-++|...+....|.
T Consensus 11 F~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 36789999999998885 556777778888889999999999998883
No 66
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=29.05 E-value=1.6e+02 Score=26.40 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=16.8
Q ss_pred cCCeEEEEEeCCCCCcceEEEEEEE
Q 004108 83 EADEILVLEFAETLPTGMGVLAIGF 107 (773)
Q Consensus 83 ~~~~~l~i~l~~~l~~g~~~l~i~y 107 (773)
.....+.+.++.+|.+|.|.|.+..
T Consensus 83 ~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 83 GGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp T-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred CCEEEEEEEEcCccCCCeEEEEEEE
Confidence 4445677777778999999999888
No 67
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=28.55 E-value=3.8e+02 Score=28.65 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC
Q 004108 717 DRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS 763 (773)
Q Consensus 717 ~~~~~~~l~~~y~~s~~~~er~~ll~aL~~~~d~~ll~~~L~~~l~~ 763 (773)
+++--+.+.++...+.+......+++|||++.........+..++++
T Consensus 213 ~~~l~~~l~~~~~~~~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~ 259 (340)
T PF12069_consen 213 PDKLAEALLERLEQAPDLELLSALLRALSSAPASDLVAILIDALLQS 259 (340)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCchhHHHHHHHHHhcC
Confidence 56667888888888877888888999999988888888877777765
No 68
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=28.17 E-value=2.3e+02 Score=27.19 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004108 297 NKQRVATVVAHELAHQWF 314 (773)
Q Consensus 297 ~~~~~~~~iaHElaHqWf 314 (773)
.+..+..+++|||.|.|=
T Consensus 67 ~~~~l~~~l~HELIHayD 84 (173)
T PF09768_consen 67 SQGHLEDTLTHELIHAYD 84 (173)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 344578999999999883
No 69
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=28.17 E-value=40 Score=35.22 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 004108 298 KQRVATVVAHELAHQWFGN 316 (773)
Q Consensus 298 ~~~~~~~iaHElaHqWfGn 316 (773)
...++.+++||+|||=-+.
T Consensus 272 ddglAtvLgHE~aHaVarH 290 (424)
T KOG2661|consen 272 DDGLATVLGHEIAHAVARH 290 (424)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3468999999999997664
No 70
>PRK10301 hypothetical protein; Provisional
Probab=27.95 E-value=3.4e+02 Score=24.33 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=19.0
Q ss_pred CCeEEEEEeCCCCCcceEEEEEEEEe
Q 004108 84 ADEILVLEFAETLPTGMGVLAIGFEG 109 (773)
Q Consensus 84 ~~~~l~i~l~~~l~~g~~~l~i~y~g 109 (773)
+...+.+.++.+|++|.|+|.-+--+
T Consensus 84 ~~~~~~v~l~~~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 84 DQKQLIVPLADSLKPGTYTVDWHVVS 109 (124)
T ss_pred CCcEEEEECCCCCCCccEEEEEEEEe
Confidence 34567888888899999987654443
No 71
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=27.75 E-value=47 Score=32.73 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=19.9
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHHHHhcCCcC
Q 004108 287 LYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (773)
Q Consensus 287 l~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (773)
+|++........-.+-.+|||||.|-.-...+.
T Consensus 22 ~f~~~~p~~~~yg~lG~ilahel~hafd~~g~~ 54 (206)
T PF01431_consen 22 FFDPNYPPALNYGGLGFILAHELMHAFDPEGIN 54 (206)
T ss_dssp T--TTS-HHHHHHTHHHHHHHHHHHCTSTTGGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 445444445555567889999999976443333
No 72
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=27.71 E-value=84 Score=29.05 Aligned_cols=13 Identities=54% Similarity=0.703 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 004108 300 RVATVVAHELAHQ 312 (773)
Q Consensus 300 ~~~~~iaHElaHq 312 (773)
.+..+|.|||||-
T Consensus 60 f~~~vV~HELaHl 72 (156)
T COG3091 60 FIEQVVPHELAHL 72 (156)
T ss_pred HHHHHHHHHHHHH
Confidence 4678899999873
No 73
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=26.56 E-value=2.2e+02 Score=28.30 Aligned_cols=39 Identities=18% Similarity=-0.014 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhcCCcC-----ccccchhHHhhhHHHHHHHH
Q 004108 301 VATVVAHELAHQWFGNLVT-----MEWWTHLWLNEGFATWVSYL 339 (773)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt-----~~~w~d~WL~EGfA~y~~~~ 339 (773)
-..++||||.|-|+..-.- ...|...=..|--|++++..
T Consensus 72 ~rFtlAHELGH~llH~~~~~~~~~~~~~~~~~~~E~~AN~FAa~ 115 (213)
T COG2856 72 KRFTLAHELGHALLHTDLNTRFDAEPTLQQDRKIEAEANAFAAE 115 (213)
T ss_pred HHHHHHHHHhHHHhccccchhhhcccccchhHHHHHHHHHHHHH
Confidence 4578999999999986531 11223333456667776643
No 74
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=26.46 E-value=1.5e+02 Score=35.28 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=44.3
Q ss_pred EEEEEEcCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCC--------Ccccccc----cceeeeccccc
Q 004108 220 KVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFA--------AGAMENY----GLVTYRETALL 287 (773)
Q Consensus 220 ~v~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k~d~v~~p~~~--------~gamE~~----gli~~~e~~ll 287 (773)
.+.+|..++.....+.+.+.....+.+=..++...-|.+-..++..-.|. .|+|=+. |++.+.+.
T Consensus 242 ~lE~Wt~~dki~~~~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~~~~--- 318 (716)
T KOG3607|consen 242 GLEIWTDGNKIDVSEDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKFHSD--- 318 (716)
T ss_pred EEEecCCCCeecccccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeecCcc---
Confidence 35678888776666556666666666655556533354444444332221 2344432 22222222
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHH
Q 004108 288 YDDQHSAAANKQRVATVVAHELAHQ 312 (773)
Q Consensus 288 ~~~~~~~~~~~~~~~~~iaHElaHq 312 (773)
.....+.++||||+|-
T Consensus 319 ---------~~~~~a~v~AhelgH~ 334 (716)
T KOG3607|consen 319 ---------ILLAFAVVLAHELGHN 334 (716)
T ss_pred ---------cchhHHHHHHHHHHhh
Confidence 1234788999999996
No 75
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=24.65 E-value=40 Score=28.49 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=22.1
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhccCCCCHHH
Q 004108 401 MLQNYLGAECFQRSLASYIKKYACSNAKTED 431 (773)
Q Consensus 401 mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~d 431 (773)
.++.+||++.|.+..+.|+.++.-.+....+
T Consensus 54 ~~~~llG~~~f~~la~~y~~~~p~~s~~l~~ 84 (94)
T PF09836_consen 54 VVRALLGEEFFDALARAYIRAHPSRSPDLND 84 (94)
T ss_dssp TGGGGS-HHHHHHHHHHHHHSGGGG-S-GGG
T ss_pred HHHHHhCHHHHHHHHHHHHHhCCCCCCcHHH
Confidence 3466789999999999999998765554433
No 76
>PF13205 Big_5: Bacterial Ig-like domain
Probab=23.81 E-value=4.4e+02 Score=22.19 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.1
Q ss_pred cCCeEEEEEeCCCCCcc-eEEEEEEEE
Q 004108 83 EADEILVLEFAETLPTG-MGVLAIGFE 108 (773)
Q Consensus 83 ~~~~~l~i~l~~~l~~g-~~~l~i~y~ 108 (773)
..+..+.|.+.++|.+| .|+|.|.-.
T Consensus 59 ~~~~~~~i~p~~~L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 59 WDGNTLTITPSQPLKPGTTYTVTIDSG 85 (107)
T ss_pred ccCCEEEEEECCcCCCCCEEEEEECCC
Confidence 56689999999999999 999998544
No 77
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=23.75 E-value=4.8e+02 Score=30.26 Aligned_cols=80 Identities=10% Similarity=0.084 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCCchhhhhhhheeeecccCCCHHHHHHHHHHHHcCCC---HH
Q 004108 659 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDL---SQ 735 (773)
Q Consensus 659 ~~lR~~v~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~---~~ 735 (773)
...|..+++.....|..+|+....++... ..+++.....++......++.-+.+..+.++++.+.... +.
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~-------~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~ 412 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKN-------KKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPY 412 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHH
Confidence 57889999999999999999887665542 246665555455555566677888899999998876533 23
Q ss_pred HHHHHHHHhC
Q 004108 736 EKTRILSSLA 745 (773)
Q Consensus 736 er~~ll~aL~ 745 (773)
-+...+-|+|
T Consensus 413 l~~sa~l~~~ 422 (574)
T smart00638 413 LRESALLAYG 422 (574)
T ss_pred HHHHHHHHHH
Confidence 4455555554
No 78
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=23.64 E-value=1.6e+02 Score=31.06 Aligned_cols=107 Identities=13% Similarity=0.060 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCC--------CCCccEEEecCCCCcccc-cccceeeecccccccCCCChhHHHHHHH
Q 004108 232 QGKFALNVAVKTLELYKEYFAVPYS--------LPKLDMIAIPDFAAGAME-NYGLVTYRETALLYDDQHSAAANKQRVA 302 (773)
Q Consensus 232 ~~~~~l~~~~~~l~~~e~~fg~~yP--------~~k~d~v~~p~~~~gamE-~~gli~~~e~~ll~~~~~~~~~~~~~~~ 302 (773)
.....++...++++...++.|++.+ .++..+|.-+....|.|- ..+-|.+..... +.- -.......-.
T Consensus 144 d~~~ll~~~D~ii~~~~el~Gl~~~~~~~~~~~~~~~r~v~~v~~~~g~m~a~g~~i~~~~~~~--~~~-l~~~~~~~~~ 220 (307)
T PF13402_consen 144 DPEELLRFWDRIIDAEYELAGLDKSSPGPENNPMPNNRFVFDVQISAGYMHASGYPIGFPPNWM--NEL-LNPNPLRKGG 220 (307)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT-BSS--GGGB--S--EEEEEETT----SEEEETTEEEEETT----HHH-H-HHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCccccCcccceEEEeccccccceeecCCcEEeeCcHH--hcc-cCHhHcCCCC
Confidence 3456677788899999999998773 223367777777767776 333344432200 000 0000111124
Q ss_pred HHHHHHHHHHHhcCCcCccccchhHHhhhHHHHHHHHHhhhhCC
Q 004108 303 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP 346 (773)
Q Consensus 303 ~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~ 346 (773)
-.+.||+.|+-= ..+=.|.. +-|.-...++........+
T Consensus 221 WG~~HE~GH~~Q---~~~~~~~g--~~EvTnNi~sl~~~~~~~~ 259 (307)
T PF13402_consen 221 WGPWHELGHNHQ---QGPWTWSG--MGEVTNNIYSLYVQEKFGN 259 (307)
T ss_dssp HHHHHHHHHHH----BGGG--TT---TTTTHHHHHHHHHHHTT-
T ss_pred eeehhhhhhhcC---ccccccCC--CCchhhHHHHHHHHHHHhc
Confidence 479999999842 11111333 6788888888776666553
No 79
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=23.09 E-value=1.8e+02 Score=28.93 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHH
Q 004108 301 VATVVAHELAHQW 313 (773)
Q Consensus 301 ~~~~iaHElaHqW 313 (773)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 4689999999985
No 80
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=22.87 E-value=51 Score=27.01 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCCCCCCCccEEEecCCCC--cccccccceeeecccccccCCC---ChhHHHHHHHHHHHHHHHHHH
Q 004108 243 TLELYKEYFAVPYSLPKLDMIAIPDFAA--GAMENYGLVTYRETALLYDDQH---SAAANKQRVATVVAHELAHQW 313 (773)
Q Consensus 243 ~l~~~e~~fg~~yP~~k~d~v~~p~~~~--gamE~~gli~~~e~~ll~~~~~---~~~~~~~~~~~~iaHElaHqW 313 (773)
+-..+|..||.+ |.+..+-.-|.-.. .+|. +--++.... +.+.+.. ++. .-..+++||++|-+
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a~~~~~~~~-A~A~T~G~~-I~f~~g~~~~~s~----~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAASRAAAALG-ARAFTVGND-IYFAPGKYNPDSP----EGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCchhhhhhccC-CeEEEECCE-EEEcCCCcCCCCC----CcchhHhHHHHHHH
Confidence 456789999954 55655543332111 1111 112333333 3332221 111 13468999999965
No 81
>PRK09687 putative lyase; Provisional
Probab=22.18 E-value=8.9e+02 Score=25.11 Aligned_cols=149 Identities=13% Similarity=0.098 Sum_probs=79.7
Q ss_pred CHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHH
Q 004108 586 TLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEI 665 (773)
Q Consensus 586 ~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lR~~v 665 (773)
.-..++.++.-|-++.+..+-..+...|..|..--.. ..+....+.. + +. .| .+..+|..+
T Consensus 51 ~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-~~~a~~~L~~----l----~~--------~D--~d~~VR~~A 111 (280)
T PRK09687 51 GGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-QDNVFNILNN----L----AL--------ED--KSACVRASA 111 (280)
T ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-hHHHHHHHHH----H----Hh--------cC--CCHHHHHHH
Confidence 3345555555555566777777777777665421000 0011111111 1 00 01 124566666
Q ss_pred HHHHHhcCCHHH--HHHHHHHHHHHHcCCCCCCCCchhhhhhhheeeecccCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004108 666 FTALALLGHKET--LNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSS 743 (773)
Q Consensus 666 ~~~ac~~g~~~c--~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~er~~ll~a 743 (773)
+..+...+...+ ...+.+.+...+.+ -++..|..+-.++. ..++....+.|....+. .++.-|.....|
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D-----~~~~VR~~a~~aLg---~~~~~~ai~~L~~~L~d-~~~~VR~~A~~a 182 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFD-----KSTNVRFAVAFALS---VINDEAAIPLLINLLKD-PNGDVRNWAAFA 182 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhC-----CCHHHHHHHHHHHh---ccCCHHHHHHHHHHhcC-CCHHHHHHHHHH
Confidence 666555543322 12344444444433 14677775444433 24678888888888764 455789999999
Q ss_pred hCCC--CCHHHHHHHHHHhcC
Q 004108 744 LASC--PDVNIVLEVLNFLLS 762 (773)
Q Consensus 744 L~~~--~d~~ll~~~L~~~l~ 762 (773)
||.. .++..+.-++..+-+
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~D 203 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQD 203 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhcC
Confidence 9954 477766655555433
No 82
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=20.94 E-value=65 Score=31.38 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q 004108 299 QRVATVVAHELAHQW 313 (773)
Q Consensus 299 ~~~~~~iaHElaHqW 313 (773)
.....++||||+|.+
T Consensus 140 ~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 140 YNGAITFAHEIGHNL 154 (196)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CceehhhHHhHHHhc
Confidence 346789999999987
No 83
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=20.26 E-value=4e+02 Score=23.87 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=18.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004108 665 IFTALALLGHKETLNEASKRFH 686 (773)
Q Consensus 665 v~~~ac~~g~~~c~~~a~~~f~ 686 (773)
|+..+|..|.+.|+.++++...
T Consensus 61 ilk~l~~~G~~~f~~~~~~~~~ 82 (122)
T cd03572 61 IIKHLCEKGNSDFKRELQRNSA 82 (122)
T ss_pred HHHHHHhhCCHHHHHHHHHhHH
Confidence 6899999999999988877654
Done!