Citrus Sinensis ID: 004109
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 773 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DN14 | 999 | Multiple C2 and transmemb | no | no | 0.495 | 0.383 | 0.216 | 9e-17 | |
| Q5RJH2 | 878 | Multiple C2 and transmemb | no | no | 0.507 | 0.446 | 0.224 | 1e-13 | |
| Q6DN12 | 878 | Multiple C2 and transmemb | no | no | 0.510 | 0.449 | 0.222 | 3e-13 | |
| O43581 | 403 | Synaptotagmin-7 OS=Homo s | no | no | 0.269 | 0.516 | 0.264 | 5e-13 | |
| Q9R0N7 | 403 | Synaptotagmin-7 OS=Mus mu | no | no | 0.269 | 0.516 | 0.272 | 2e-12 | |
| P40748 | 588 | Synaptotagmin-3 OS=Rattus | no | no | 0.280 | 0.369 | 0.294 | 2e-12 | |
| O35681 | 587 | Synaptotagmin-3 OS=Mus mu | no | no | 0.278 | 0.366 | 0.295 | 2e-12 | |
| Q9BQG1 | 590 | Synaptotagmin-3 OS=Homo s | no | no | 0.272 | 0.357 | 0.297 | 5e-12 | |
| P41885 | 1106 | Rabphilin-1 OS=Caenorhabd | no | no | 0.306 | 0.214 | 0.272 | 1e-11 | |
| Q9Y6V0 | 5065 | Protein piccolo OS=Homo s | no | no | 0.156 | 0.023 | 0.349 | 2e-11 |
| >sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 89.4 bits (220), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 102/471 (21%), Positives = 196/471 (41%), Gaps = 88/471 (18%)
Query: 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDR 95
M L + + + + L +D G+ DPYV+ K+G + ++ K NP W + D
Sbjct: 260 MYQLDITLRRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACILVDH 319
Query: 96 IQSSVLEVTVKDKDF-VKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED-RKGDKVRG 153
++ L + V D DF ++DDFMG DL ++ P D L L+D D G
Sbjct: 320 LREP-LYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLT-----LKDPHYPDHDLG 373
Query: 154 ELMLAVWMGTQADEA------FPEAWHSDAATVTGIEGLA---NIRSKVYLS------PK 198
++L+V + + E+ ++W + ++ E + +++S + + P
Sbjct: 374 IILLSVILTPKEGESRDVTMLMRKSWKRSSKELSENEVVGSYFSVKSLFWRTCGRPALPV 433
Query: 199 LWYLRVNV---------IEAQDLQPTD-----------------KGR---------FPEV 223
L + R + + Q L+ +D +GR +
Sbjct: 434 LGFCRAELQNPYCKNVQFQTQSLRLSDLHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDP 493
Query: 224 YVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKC 283
YVK +LG+Q ++++ +T+NP W E F E + +T D+ A +D+ +G+C
Sbjct: 494 YVKFRLGHQKYKSKI-MPKTLNPQWREQFDFHLYEERGGVIDITAWDKDAGKRDDFIGRC 552
Query: 284 MIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDEST 343
+ L + + HK + + E H+V + + + + D S
Sbjct: 553 QVDLSALSREQTHK-LELQLEEGEGHLV--------------LLVTLTASATVSISDLSV 597
Query: 344 HYSSDLRPTAKQLWKSS----------IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAK 393
+ D + + L + S +G L++ ++ A+GLM D G +D +CV +
Sbjct: 598 NSLEDQKEREEILKRYSPLRIFHNLKDVGFLQVKVIRAEGLM---AADVTGKSDPFCVVE 654
Query: 394 YGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAG 444
+ T T+ + P+WN+ +T+ + D +V+ + V+D D G
Sbjct: 655 LNNDRLLTHTVYKNLNPEWNKVFTFNIKDIHSVLEVTVYDEDRDRSADFLG 705
|
Homo sapiens (taxid: 9606) |
| >sp|Q5RJH2|MCTP2_MOUSE Multiple C2 and transmembrane domain-containing protein 2 OS=Mus musculus GN=Mctp2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/432 (22%), Positives = 186/432 (43%), Gaps = 40/432 (9%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM-GNYKGTTRHFEKKTNPEWNQVFAFSKDRIQS 98
L + + + ++L +D G+ DPYV+ K+ G ++ K NP W+++ +
Sbjct: 196 LTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYKSKVIYKNLNPIWDEIVVLPIQSLDQ 255
Query: 99 SVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELML 157
L V V D+D K DFMG L ++ + L +LED + G ++L
Sbjct: 256 K-LRVKVYDRDLTKSDFMGSAFVVLRDLELNRTTEHIL-----KLEDPNSLEDDMGVIVL 309
Query: 158 AVWMGTQADEAFPEAWHSDAATVTGIEGLA-NIR-SKVYLSPKLW--YLRVNVIEAQDLQ 213
+ + + + W + L N+R S+ +LW + + ++E +++
Sbjct: 310 NLNLVVKQGDFKRHRWSNRKRLSASKSSLIRNLRLSESLRKNQLWNGIISITLLEGKNVS 369
Query: 214 PTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVA 273
G E++V+ +LG Q +++ + ++ NP W E F L + V + +
Sbjct: 370 ---GGNMTEMFVQLKLGEQRYKSK-TLCKSANPQWQEQFDFHYFSDRMGILDIEVWGKDS 425
Query: 274 PNKDEVLGKCMIPLQYVDKRLDHK---PVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRI 330
+E LG C + + + + D+ P+ + L I + S + +
Sbjct: 426 KKHEERLGTCKVDISALPLKQDNCLELPLESCQGALLMLITLTP-----CTGVSISDLCV 480
Query: 331 C-LEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAY 389
C E S Y+ + + K + +G+L++ +L A L+ D G +D +
Sbjct: 481 CPFEDPSERQQISQRYA--FQNSLKDV--KDVGILQVKVLKASDLL---AADFSGKSDPF 533
Query: 390 CVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDS 449
C+ + G ++T TI + P+WN+ +T+ + D V+ + VFD GDKA
Sbjct: 534 CLLELGNDRLQTHTIYKNLNPEWNKVFTFPIKDIHDVLEVTVFD----EDGDKAPDF--- 586
Query: 450 RIGKVRIRLSTL 461
+GKV I L ++
Sbjct: 587 -LGKVAIPLLSI 597
|
Mus musculus (taxid: 10090) |
| >sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 100/450 (22%), Positives = 189/450 (42%), Gaps = 55/450 (12%)
Query: 13 TKPHLGGGKITGDKLTSTYDLVEQMQYLY-VRVVKAKDLPPKDVTGSCDPYVEVKM-GNY 70
T H + G+ +L YL + + + ++L +D G+ DPYV+ K+ G
Sbjct: 168 TSQHFEEQSVPGEASDGLSNLPSPFAYLLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKT 227
Query: 71 KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRV 130
++ K NP W+++ + L V V D+D DFMG L+++
Sbjct: 228 LYKSKVIYKNLNPVWDEIVVLPIQSLDQK-LRVKVYDRDLTTSDFMGSAFVILSDLELNR 286
Query: 131 PPDSPLAPQWYRLEDRKG-DKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLA-N 188
+ L +LED + G ++L + + + + W + L N
Sbjct: 287 TTEHIL-----KLEDPNSLEDDMGVIVLNLNLVVKQGDFKRHRWSNRKRLSASKSSLIRN 341
Query: 189 IR-SKVYLSPKLW--YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTIN 245
+R S+ +LW + + ++E +++ G E++V+ +LG+Q +++ + ++ N
Sbjct: 342 LRLSESLKKNQLWNGIISITLLEGKNVS---GGSMTEMFVQLKLGDQRYKSK-TLCKSAN 397
Query: 246 PMWNEDLMFVAAEPFEEHL-ILTVEDRVAPNK--DEVLGKCMIPLQYVDKRLDHKPVNTR 302
P W E F F + + IL +E NK +E LG C + + L K N
Sbjct: 398 PQWQEQFDF---HYFSDRMGILDIEVWGKDNKKHEERLGTCKVDIS----ALPLKQANCL 450
Query: 303 WYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDL----RPTAKQLWK 358
L+ + + + C G V D +DL + T + +
Sbjct: 451 ELPLDSCL---------GALLMLVTLTPC--AGVSVSDLCVCPLADLSERKQITQRYCLQ 499
Query: 359 SS------IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKW 412
+S +G+L++ +L A L+ D G +D +C+ + G ++T T+ + P+W
Sbjct: 500 NSLKDVKDVGILQVKVLKAADLL---AADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEW 556
Query: 413 NEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442
N+ +T+ + D V+ + VFD GDK
Sbjct: 557 NKVFTFPIKDIHDVLEVTVFD----EDGDK 582
|
Homo sapiens (taxid: 9606) |
| >sp|O43581|SYT7_HUMAN Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 120/261 (45%), Gaps = 53/261 (20%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVF--- 89
Q L V+++KA++LP KD +G+ DP+V++ + +K T+ K NP WN+ F
Sbjct: 148 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 207
Query: 90 AFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED-RK 147
F +++ +L + V D D F ++D +G V LN++ + + W L+
Sbjct: 208 GFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQTFWKDLKPCSD 262
Query: 148 GDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVI 207
G RGEL+L++ A+ VN+I
Sbjct: 263 GSGSRGELLLSLCYNPSANSII----------------------------------VNII 288
Query: 208 EAQDLQPTDKGRFPEVYVKAQLGNQALRTR----VSASRTINPMWNEDLMF-VAAEPFEE 262
+A++L+ D G + YVK L + R V+ R +NP++NE F + E E
Sbjct: 289 KARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRE 348
Query: 263 -HLILTVEDRVAPNKDEVLGK 282
+I+TV D+ ++++V+GK
Sbjct: 349 TTIIITVMDKDKLSRNDVIGK 369
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Homo sapiens (taxid: 9606) |
| >sp|Q9R0N7|SYT7_MOUSE Synaptotagmin-7 OS=Mus musculus GN=Syt7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 120/261 (45%), Gaps = 53/261 (20%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVF--- 89
Q L V+V+KA++LP KD +G+ DP+V++ + +K T+ K NP WN+ F
Sbjct: 148 QESTLTVKVMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 207
Query: 90 AFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED-RK 147
F +++ VL + V D D F ++D +G V LN++ + + W L+
Sbjct: 208 GFPYEKVVQRVLYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQTFWKDLKPCSD 262
Query: 148 GDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVI 207
G RGEL+L++ A+ VN+I
Sbjct: 263 GSGSRGELLLSLCYNPSANSII----------------------------------VNII 288
Query: 208 EAQDLQPTDKGRFPEVYVKAQLGNQALR----TRVSASRTINPMWNEDLMF-VAAEPFEE 262
+A++L+ D G + YVK L + R V+ R +NP++NE F + E E
Sbjct: 289 KARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRE 348
Query: 263 -HLILTVEDRVAPNKDEVLGK 282
+I+TV D+ ++++V+GK
Sbjct: 349 TTIIITVMDKDKLSRNDVIGK 369
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Mus musculus (taxid: 10090) |
| >sp|P40748|SYT3_RAT Synaptotagmin-3 OS=Rattus norvegicus GN=Syt3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 123/275 (44%), Gaps = 58/275 (21%)
Query: 37 MQYLY------VRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQ 87
++YLY VR+++A DLP KD G DPYV++ + K T+ K NP +N+
Sbjct: 305 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 364
Query: 88 VFAFSK--DRIQSSVLEVTVKDKD-FVKDDFMGRVLFD-LNEIPKRVPPDSPLAPQWYRL 143
F FS + L +V D D F + D +G+V+ D L E+ ++ PPD PL W +
Sbjct: 365 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPL---WRDI 420
Query: 144 EDRKGDKVR-GELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYL 202
+ +K GEL ++ YL P L
Sbjct: 421 LEGGSEKADLGELNFSL---------------------------------CYL-PTAGLL 446
Query: 203 RVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS----RTINPMWNEDLMF-VAA 257
V +I+A +L+ D F + YVKA L ++ R + + T+NP +NE L+F VA
Sbjct: 447 TVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP 506
Query: 258 EPFEE-HLILTVEDRVAPNKDEVLGKCMIPLQYVD 291
E E L + V D +EV+G C + + D
Sbjct: 507 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 541
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Rattus norvegicus (taxid: 10116) |
| >sp|O35681|SYT3_MOUSE Synaptotagmin-3 OS=Mus musculus GN=Syt3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 120/267 (44%), Gaps = 52/267 (19%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVFAFSK-- 93
+L VR+++A DLP KD G DPYV++ + K T+ K NP +N+ F FS
Sbjct: 312 HLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 371
Query: 94 DRIQSSVLEVTVKDKD-FVKDDFMGRVLFD-LNEIPKRVPPDSPLAPQWYRLEDRKGDKV 151
+ L +V D D F + D +G+V+ D L E+ ++ PPD PL W + + +K
Sbjct: 372 AELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPL---WRDILEGGSEKA 427
Query: 152 R-GELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQ 210
GEL ++ YL P L V +I+A
Sbjct: 428 DLGELNFSL---------------------------------CYL-PTAGRLTVTIIKAS 453
Query: 211 DLQPTDKGRFPEVYVKAQLGNQALRTRVSAS----RTINPMWNEDLMF-VAAEPFEE-HL 264
+L+ D F + YVKA L ++ R + + T+NP +NE L+F VA E E L
Sbjct: 454 NLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL 513
Query: 265 ILTVEDRVAPNKDEVLGKCMIPLQYVD 291
+ V D +EV+G C + + D
Sbjct: 514 SIAVVDYDCIGHNEVIGVCRVGPEAAD 540
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Mus musculus (taxid: 10090) |
| >sp|Q9BQG1|SYT3_HUMAN Synaptotagmin-3 OS=Homo sapiens GN=SYT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 121/269 (44%), Gaps = 58/269 (21%)
Query: 37 MQYLY------VRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQ 87
++YLY VR+++A DLP KD G DPYV++ + K T+ K NP +N+
Sbjct: 307 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPVFNE 366
Query: 88 VFAFSK--DRIQSSVLEVTVKDKD-FVKDDFMGRVLFD-LNEIPKRVPPDSPLAPQWYRL 143
F FS + L +V D D F + D +G+V+ D L E+ ++ PPD PL W +
Sbjct: 367 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPL---WRDI 422
Query: 144 EDRKGDKVR-GELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYL 202
+ +K GEL ++ YL P L
Sbjct: 423 VEGGSEKADLGELNFSL---------------------------------CYL-PTAGRL 448
Query: 203 RVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS----RTINPMWNEDLMF-VAA 257
V +I+A +L+ D F + YVKA L ++ R + + T+NP +NE L+F VA
Sbjct: 449 TVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP 508
Query: 258 EPFEE-HLILTVEDRVAPNKDEVLGKCMI 285
E E L + V D +EV+G C +
Sbjct: 509 ESVENVGLSIAVVDYDCIGHNEVIGVCRV 537
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Homo sapiens (taxid: 9606) |
| >sp|P41885|RBF1_CAEEL Rabphilin-1 OS=Caenorhabditis elegans GN=rbf-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 124/290 (42%), Gaps = 53/290 (18%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYKGT---T 74
G IT LT TY ++ L + +++AK+L D G DPYV+ + GN K T +
Sbjct: 829 GSIT---LTLTYHSADKK--LKMHLIRAKNLKAMDSNGFSDPYVKFHLLPGNTKATKLTS 883
Query: 75 RHFEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVP 131
+ EK NPEWN+ ++ ++D + +L VTV D+D + DF+G L
Sbjct: 884 KTIEKTLNPEWNEEMSYYGITEDDKEKKILRVTVLDRDRIGSDFLGETRIALK------- 936
Query: 132 PDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRS 191
+L D + K L A+ + Q E E G N+
Sbjct: 937 ----------KLNDNEMKKFNLYLESALPVPQQTKEEENED-----------RGKINVGL 975
Query: 192 KVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSA-SRTINPM 247
+ + + L +N+ +L D F + Y K L ++A R + S RT+NP
Sbjct: 976 QYNI--QQGSLFININRCVELVGMDSTGFSDPYCKVSLTPITSKAHRAKTSTKKRTLNPE 1033
Query: 248 WNEDLMFVAAEPFEE----HLILTVEDRVAPNKDEVLGKCMIPLQYVDKR 293
WNE L FV PF++ L + V D D+ +G ++ D+R
Sbjct: 1034 WNEQLQFVV--PFKDLPKKTLQIGVYDHDLGKHDDYIGGILLSTSAKDER 1081
|
Rab-3 effector. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1 SV=4 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 22/143 (15%)
Query: 15 PHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEV-----KMGN 69
P + K KL YDL L + +++A++L P+D G DP+V+V +
Sbjct: 4559 PSVSKKKHGSSKLQINYDLGN----LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGAE 4614
Query: 70 YKGTTRHFEKKTNPEWNQVF---AFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNE 125
YK T+H +K NPEWNQ + S ++++ LEVTV D D F +DF+G VL DL+
Sbjct: 4615 YKRRTKHVQKSLNPEWNQTVIYKSISMEQLKKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 4674
Query: 126 IPKRVPPDSPL--APQWYRLEDR 146
S L P+WY L+++
Sbjct: 4675 T-------SHLDNTPRWYPLKEQ 4690
|
May act as a scaffolding protein involved in the organization of synaptic active zones and in synaptic vesicle trafficking. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 773 | ||||||
| 449453842 | 776 | PREDICTED: uncharacterized protein LOC10 | 0.998 | 0.994 | 0.909 | 0.0 | |
| 449437599 | 774 | PREDICTED: multiple C2 and transmembrane | 0.998 | 0.997 | 0.928 | 0.0 | |
| 15230882 | 773 | calcium-dependent lipid-binding domain-c | 0.997 | 0.997 | 0.909 | 0.0 | |
| 110739553 | 773 | anthranilate phosphoribosyltransferase-l | 0.997 | 0.997 | 0.908 | 0.0 | |
| 14030691 | 773 | AT3g57880/T10K17_90 [Arabidopsis thalian | 0.997 | 0.997 | 0.908 | 0.0 | |
| 357509865 | 775 | Anthranilate phosphoribosyltransferase-l | 0.997 | 0.994 | 0.914 | 0.0 | |
| 225441389 | 777 | PREDICTED: multiple C2 and transmembrane | 0.998 | 0.993 | 0.907 | 0.0 | |
| 356504837 | 775 | PREDICTED: multiple C2 and transmembrane | 0.998 | 0.996 | 0.913 | 0.0 | |
| 356572078 | 775 | PREDICTED: multiple C2 and transmembrane | 0.998 | 0.996 | 0.910 | 0.0 | |
| 224120414 | 775 | predicted protein [Populus trichocarpa] | 0.998 | 0.996 | 0.901 | 0.0 |
| >gi|449453842|ref|XP_004144665.1| PREDICTED: uncharacterized protein LOC101203090 isoform 1 [Cucumis sativus] gi|449453844|ref|XP_004144666.1| PREDICTED: uncharacterized protein LOC101203090 isoform 2 [Cucumis sativus] gi|449522819|ref|XP_004168423.1| PREDICTED: uncharacterized LOC101203090 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1491 bits (3859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 703/773 (90%), Positives = 751/773 (97%), Gaps = 1/773 (0%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
+PP E+F LKET PHLGGGK+ GDKL STYDLVEQM YLYVRVVKAKDLP KDVTGSCDP
Sbjct: 4 KPPPEDFLLKETNPHLGGGKVAGDKLASTYDLVEQMYYLYVRVVKAKDLPGKDVTGSCDP 63
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTTRHFEKK+NPEWNQVFAFSKDRIQ+SVLEV+VKDKDFVKDDFMGRVLF
Sbjct: 64 YVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASVLEVSVKDKDFVKDDFMGRVLF 123
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNE+P+RVPPDSPLAPQWYRL+DRKGDKV+GELMLAVWMGTQADEAFPEAW+SDAATV+
Sbjct: 124 DLNEVPRRVPPDSPLAPQWYRLDDRKGDKVKGELMLAVWMGTQADEAFPEAWNSDAATVS 183
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G +GLANIRSKVYLSPKLWYLRVN+IEAQDLQPTDKGR+PEV+VKA LGNQALRTR+S S
Sbjct: 184 GADGLANIRSKVYLSPKLWYLRVNIIEAQDLQPTDKGRYPEVFVKAILGNQALRTRISQS 243
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINPMWNEDLMFVAAEPFEE LIL+VEDRVAPNKDEVLG+C I LQY+D+RLDH+ VNT
Sbjct: 244 RTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIQLQYIDRRLDHRAVNT 303
Query: 302 RWYNLEKHIVV-EGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS 360
RW+NLEKH+VV EGEKKK+ KF+SRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK+S
Sbjct: 304 RWFNLEKHVVVVEGEKKKEIKFSSRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKNS 363
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEV 420
IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW+RTRTIIDS PKWNEQYTWEV
Sbjct: 364 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFIPKWNEQYTWEV 423
Query: 421 FDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNG 480
FDPCTVITIGVFDNCHLHGG+KAG ++D+RIGKVRIRLSTLETDRVYTHSYPLLVL+PNG
Sbjct: 424 FDPCTVITIGVFDNCHLHGGEKAGVSKDARIGKVRIRLSTLETDRVYTHSYPLLVLHPNG 483
Query: 481 VKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLS 540
VKKMGEIHLAVRFTCSSLLNM+HMYS PLLPKMHY+HPLTVSQLDSLRHQATQIVSMRLS
Sbjct: 484 VKKMGEIHLAVRFTCSSLLNMLHMYSHPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLS 543
Query: 541 RAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPITT 600
RAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGV SG+IAVGKWFDQICNW+NPITT
Sbjct: 544 RAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVFSGLIAVGKWFDQICNWRNPITT 603
Query: 601 VLIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDE 660
VLIHILFIILV+YPELILPT+FLYLFLIGVW+YRWRPRHPPHMDTRLSHADS+HPDELDE
Sbjct: 604 VLIHILFIILVMYPELILPTIFLYLFLIGVWHYRWRPRHPPHMDTRLSHADSSHPDELDE 663
Query: 661 EFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIF 720
EFDTFPTSRP+DIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRA+ALFVIF
Sbjct: 664 EFDTFPTSRPADIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRASALFVIF 723
Query: 721 CLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
CL++AIVLYVTPFQVVALL+G YVLRHPRFR+KLPSVPLNFFRRLPARTDCML
Sbjct: 724 CLVSAIVLYVTPFQVVALLSGIYVLRHPRFRYKLPSVPLNFFRRLPARTDCML 776
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437599|ref|XP_004136579.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Cucumis sativus] gi|449501897|ref|XP_004161488.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1490 bits (3858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/772 (92%), Positives = 752/772 (97%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+F LKET PHLGGGK+TGDKLTSTYDLVEQMQYLYVRVVKAKDLP KDVTGSCDP
Sbjct: 3 RPPPEDFLLKETNPHLGGGKVTGDKLTSTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTTRHFEKK+NPEW+QVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF
Sbjct: 63 YVEVKLGNYKGTTRHFEKKSNPEWSQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
D+NEIPKRVPPDSPLAPQWYRLED+KGDK++GELMLAVWMGTQADEAFPEAWHSDAATV+
Sbjct: 123 DMNEIPKRVPPDSPLAPQWYRLEDKKGDKLKGELMLAVWMGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G +GLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGR+PEV+VKA LGNQALRTR+S +
Sbjct: 183 GTDGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRYPEVFVKAVLGNQALRTRISQN 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINP+WNEDLMFVAAEPFEE LIL+VEDRVAPNKDE LG+C IPLQYVD+RLDHKPVN+
Sbjct: 243 RTINPLWNEDLMFVAAEPFEEPLILSVEDRVAPNKDETLGRCAIPLQYVDRRLDHKPVNS 302
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSI 361
+WYNLEKHI++EGEKKK+ KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAK LWK SI
Sbjct: 303 KWYNLEKHIILEGEKKKEIKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKVLWKQSI 362
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDS TPKWNEQYTWEVF
Sbjct: 363 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSFTPKWNEQYTWEVF 422
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
DPCTV+TIGVFDNCHL GGDK GG +DSRIGKVRIRLSTLETDRVYTHSYPLLVL+PNGV
Sbjct: 423 DPCTVVTIGVFDNCHLLGGDKGGGTKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGV 482
Query: 482 KKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSR 541
KKMGEIHLAVRFTCSSLLNMMHMY+ PLLPKMHY+HPLTVSQLDSLRHQATQIVSMRL+R
Sbjct: 483 KKMGEIHLAVRFTCSSLLNMMHMYTHPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLTR 542
Query: 542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPITTV 601
AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSG+IAVGKWFDQICNWKNPITTV
Sbjct: 543 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPITTV 602
Query: 602 LIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661
LIHILFIILV+YPELILPT+FLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE
Sbjct: 603 LIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 662
Query: 662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFC 721
FDTFPTSR DIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV+FC
Sbjct: 663 FDTFPTSRGGDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFC 722
Query: 722 LIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
L+AAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML
Sbjct: 723 LVAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 774
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15230882|ref|NP_191347.1| calcium-dependent lipid-binding domain-containing plant phosphoribosyltransferase-like protein [Arabidopsis thaliana] gi|6729531|emb|CAB67616.1| anthranilate phosphoribosyltransferase-like protein [Arabidopsis thaliana] gi|332646191|gb|AEE79712.1| calcium-dependent lipid-binding domain-containing plant phosphoribosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1488 bits (3852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/772 (90%), Positives = 748/772 (96%), Gaps = 1/772 (0%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+FSLKET+PHLGGGK++GDKLTSTYDLVEQMQYLYVRVVKAK+LP KD+TGSCDP
Sbjct: 3 RPPPEDFSLKETRPHLGGGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTTRHFEKK+NPEWNQVFAFSKDRIQ+S LE TVKDKDFVKDD +GRV+F
Sbjct: 63 YVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGRVVF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNE+PKRVPPDSPLAPQWYRLEDRKGDKV+GELMLAVW GTQADEAFPEAWHSDAATV+
Sbjct: 123 DLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVNVIEAQDL PTDK R+PEVYVKA +GNQALRTRVS S
Sbjct: 183 GTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTRVSQS 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINPMWNEDLMFVAAEPFEE LIL+VEDRVAPNKDEVLG+C IPLQY+D+R DHKPVN+
Sbjct: 243 RTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHKPVNS 302
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSI 361
RWYNLEKHI+V+GEKK +TKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK +I
Sbjct: 303 RWYNLEKHIMVDGEKK-ETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNI 361
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
GVLELGILNA GLMPMKTKDGRGTTDAYCVAKYGQKW+RTRTIIDS TP+WNEQYTWEVF
Sbjct: 362 GVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVF 421
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
DPCTV+T+GVFDNCHLHGG+K GGA+DSRIGKVRIRLSTLETDRVYTHSYPLLVL+PNGV
Sbjct: 422 DPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGV 481
Query: 482 KKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSR 541
KKMGEIHLAVRFTCSSLLNMM+MYSQPLLPKMHY+HPLTVSQLD+LRHQATQIVSMRL+R
Sbjct: 482 KKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTR 541
Query: 542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPITTV 601
AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSG+IAVGKWF+QICNWKNPITTV
Sbjct: 542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTV 601
Query: 602 LIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661
LIH+LFIILVLYPELILPT+FLYLFLIG+WYYRWRPRHPPHMDTRLSHADSAHPDELDEE
Sbjct: 602 LIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661
Query: 662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFC 721
FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV+FC
Sbjct: 662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFC 721
Query: 722 LIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
LIAA++LYVTPFQVVAL G Y LRHPRFR+KLPSVPLNFFRRLPARTDCML
Sbjct: 722 LIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110739553|dbj|BAF01685.1| anthranilate phosphoribosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1486 bits (3848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 701/772 (90%), Positives = 747/772 (96%), Gaps = 1/772 (0%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+FSLKET+PHLGGGK++GDKLTSTYDLVEQMQYLYVRVVKAK+LP KD+TGSCDP
Sbjct: 3 RPPPEDFSLKETRPHLGGGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTTRHFEKK+NPEWNQVFAFSKDRIQ+S LE TVKDKDFVKDD +GRV+F
Sbjct: 63 YVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGRVVF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNE+PKRVPPDSPLAPQWYRLEDRKGDKV+GELMLAVW GTQADEAFPEAWHSDAATV+
Sbjct: 123 DLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVNVIEAQDL PTDK R+PEVYVKA +GNQALRTRVS S
Sbjct: 183 GTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTRVSQS 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINPMWNEDLMFVAAEPFEE LIL+VEDRVAPNKDE LG+C IPLQY+D+R DHKPVN+
Sbjct: 243 RTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEALGRCAIPLQYLDRRFDHKPVNS 302
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSI 361
RWYNLEKHI+V+GEKK +TKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK +I
Sbjct: 303 RWYNLEKHIMVDGEKK-ETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNI 361
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
GVLELGILNA GLMPMKTKDGRGTTDAYCVAKYGQKW+RTRTIIDS TP+WNEQYTWEVF
Sbjct: 362 GVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVF 421
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
DPCTV+T+GVFDNCHLHGG+K GGA+DSRIGKVRIRLSTLETDRVYTHSYPLLVL+PNGV
Sbjct: 422 DPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGV 481
Query: 482 KKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSR 541
KKMGEIHLAVRFTCSSLLNMM+MYSQPLLPKMHY+HPLTVSQLD+LRHQATQIVSMRL+R
Sbjct: 482 KKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTR 541
Query: 542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPITTV 601
AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSG+IAVGKWF+QICNWKNPITTV
Sbjct: 542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTV 601
Query: 602 LIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661
LIH+LFIILVLYPELILPT+FLYLFLIG+WYYRWRPRHPPHMDTRLSHADSAHPDELDEE
Sbjct: 602 LIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661
Query: 662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFC 721
FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV+FC
Sbjct: 662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFC 721
Query: 722 LIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
LIAA++LYVTPFQVVAL G Y LRHPRFR+KLPSVPLNFFRRLPARTDCML
Sbjct: 722 LIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14030691|gb|AAK53020.1|AF375436_1 AT3g57880/T10K17_90 [Arabidopsis thaliana] gi|21464555|gb|AAM52232.1| AT3g57880/T10K17_90 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1486 bits (3847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 701/772 (90%), Positives = 748/772 (96%), Gaps = 1/772 (0%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+FSLKET+PHLGGGK++GDKLTSTYDLVEQMQYLYVRVVKAK+LP KD+TGSCDP
Sbjct: 3 RPPPEDFSLKETRPHLGGGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTTRHFEKK+NPEWNQVFAFSKDRIQ+S LE TVKDKDFVKDD +GRV+F
Sbjct: 63 YVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGRVVF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNE+PKRVPPDSPLAPQWYRLEDRKGDKV+GELMLAVW GTQADEAFPEAWHSDAATV+
Sbjct: 123 DLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVNVIEAQDL PTDK R+PEVYVKA +GNQALRTRVS S
Sbjct: 183 GTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTRVSQS 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINPMWNEDLMFVAAEPFEE LIL+VEDRVAPNKDEVLG+C IPLQY+D+R DHKPVN+
Sbjct: 243 RTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHKPVNS 302
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSI 361
RWYNLEKHI+V+GEKK +TKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK +I
Sbjct: 303 RWYNLEKHIMVDGEKK-ETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNI 361
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
GVLELGILNA GLMPMKTKDGRGTTDAYCVAKYGQKW+RTRTIIDS TP+WNEQYTWEVF
Sbjct: 362 GVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVF 421
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
DPCTV+T+GVFDNCHLHGG+K GGA+DSRIGKVRIRLSTLETDRVYTHSYPLLVL+PNGV
Sbjct: 422 DPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGV 481
Query: 482 KKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSR 541
KKMGEIHLAVRFTCSSLLNMM+MYSQPLLPKMHY+HPLTVSQLD+LRHQATQIVSMRL++
Sbjct: 482 KKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTQ 541
Query: 542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPITTV 601
AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSG+IAVGKWF+QICNWKNPITTV
Sbjct: 542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTV 601
Query: 602 LIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661
LIH+LFIILVLYPELILPT+FLYLFLIG+WYYRWRPRHPPHMDTRLSHADSAHPDELDEE
Sbjct: 602 LIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661
Query: 662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFC 721
FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV+FC
Sbjct: 662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFC 721
Query: 722 LIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
LIAA++LYVTPFQVVAL G Y LRHPRFR+KLPSVPLNFFRRLPARTDCML
Sbjct: 722 LIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509865|ref|XP_003625221.1| Anthranilate phosphoribosyltransferase-like protein [Medicago truncatula] gi|124360660|gb|ABN08649.1| C2 [Medicago truncatula] gi|355500236|gb|AES81439.1| Anthranilate phosphoribosyltransferase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1483 bits (3840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 708/774 (91%), Positives = 747/774 (96%), Gaps = 3/774 (0%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+F LKETKPHLGG K++GDKLTSTYDLVEQMQYLYVRVVKAK+LP KDVTGSCDP
Sbjct: 3 RPPPEDFLLKETKPHLGG-KVSGDKLTSTYDLVEQMQYLYVRVVKAKELPSKDVTGSCDP 61
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTTRHFEKKTNPEWNQVFAFSKDRIQ+SVLEV VKDKDFVKDDF+GRV F
Sbjct: 62 YVEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQASVLEVFVKDKDFVKDDFIGRVWF 121
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNEIPKRVPPDSPLAPQWYRLEDRK DKV+GELMLAVWMGTQADEAFPEAWHSDAATV+
Sbjct: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKSDKVKGELMLAVWMGTQADEAFPEAWHSDAATVS 181
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVNVIEAQDLQP+DKGRFPEVYVKA LGNQ LRTR+S S
Sbjct: 182 GTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPSDKGRFPEVYVKAILGNQTLRTRISQS 241
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
R+INPMWNEDLMFVAAEPFEE LIL+VEDRVAPNK+E+LGKC+IPLQ +D+RLDHKPVNT
Sbjct: 242 RSINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKEELLGKCVIPLQMMDRRLDHKPVNT 301
Query: 302 RWYNLEKHIVV-EGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS 360
RW+N+EKH+V+ EG+KKK+ KFASRIHMR+CLEGGYHVLDESTHYSSDLRPTAKQLWKSS
Sbjct: 302 RWFNIEKHVVIMEGDKKKEIKFASRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSS 361
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEV 420
IGVLE+GILNA GLMPMK+ +GRGTTDAYCVAKYGQKWVRTRTIIDS P+WNEQYTWEV
Sbjct: 362 IGVLEVGILNASGLMPMKSNNGRGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEV 421
Query: 421 FDPCTVITIGVFDNCHLH-GGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPN 479
FDPCTVITIGVFDNCHLH GGDK GG RDS+IGKVRIRLSTLETDRVYTHSYPLLVL+P
Sbjct: 422 FDPCTVITIGVFDNCHLHHGGDKPGGQRDSKIGKVRIRLSTLETDRVYTHSYPLLVLHPT 481
Query: 480 GVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRL 539
GVKKMGEI LAVRFTCSSLLNMMHMYS PLLPKMHY+HPLTVSQLDSLRHQATQIVSMRL
Sbjct: 482 GVKKMGEIQLAVRFTCSSLLNMMHMYSNPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRL 541
Query: 540 SRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPIT 599
SRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSG+IAVGKWFDQICNWKNPIT
Sbjct: 542 SRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPIT 601
Query: 600 TVLIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELD 659
TVLIHILFIILV+YPELILPT+FLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELD
Sbjct: 602 TVLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELD 661
Query: 660 EEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVI 719
EEFDTFPT+RPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV+
Sbjct: 662 EEFDTFPTTRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVL 721
Query: 720 FCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
FCLIAAIVLYVTPFQVVALL+G YVLRHPRFRHKLPSVPLNFFRRLPARTDCML
Sbjct: 722 FCLIAAIVLYVTPFQVVALLSGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 775
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441389|ref|XP_002278165.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1478 bits (3825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 703/775 (90%), Positives = 749/775 (96%), Gaps = 3/775 (0%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP ++FSLKET PHLGGGK+TGDKLTSTYDLVEQMQYLYVRVVKAKDLP KDVTGSCDP
Sbjct: 3 RPPPDDFSLKETSPHLGGGKVTGDKLTSTYDLVEQMQYLYVRVVKAKDLPSKDVTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTT HFEKKTNPEWN+VFAFSKDR+Q+S+LEV VKDKDFVKDD++GRV+F
Sbjct: 63 YVEVKLGNYKGTTPHFEKKTNPEWNRVFAFSKDRMQASMLEVIVKDKDFVKDDYIGRVVF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRG-ELMLAVWMGTQADEAFPEAWHSDAATV 180
DLNE+PKRVPPDSPLAPQWYRLEDRKGDKV+G ELMLAVWMGTQADEAFP+AWHSDAA V
Sbjct: 123 DLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGGELMLAVWMGTQADEAFPDAWHSDAAAV 182
Query: 181 TGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSA 240
+G +GLAN+RSKVYLSPKLWYLRVNVIEAQDLQPTD+GR+PEV+VKA LGNQALRTR+S
Sbjct: 183 SGSDGLANMRSKVYLSPKLWYLRVNVIEAQDLQPTDRGRYPEVFVKAILGNQALRTRISQ 242
Query: 241 SRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVN 300
++INPMWNEDLMFVA+EPFEE LIL+VEDRV NKDEVLG+C IPLQYVD+R DHK +N
Sbjct: 243 IKSINPMWNEDLMFVASEPFEEPLILSVEDRVGNNKDEVLGRCAIPLQYVDRRFDHKIMN 302
Query: 301 TRWYNLEKHIVVEGE-KKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKS 359
+RW+NLEKHIVV+GE KKK+ KFASRIH+RICLEGGYHVLDESTHYSSDLRPT K+LWKS
Sbjct: 303 SRWFNLEKHIVVDGEQKKKEIKFASRIHLRICLEGGYHVLDESTHYSSDLRPTEKRLWKS 362
Query: 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWE 419
SIGVLELGILNAQGL+PMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDS TPKWNEQYTWE
Sbjct: 363 SIGVLELGILNAQGLLPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSSTPKWNEQYTWE 422
Query: 420 VFDPCTVITIGVFDNCHLHGGDKAGGA-RDSRIGKVRIRLSTLETDRVYTHSYPLLVLYP 478
V+DPCTVITIGVFDNCHLHGGDKAGGA +DSRIGKVRIRLSTLETDRVYTHSYPLLVL+P
Sbjct: 423 VYDPCTVITIGVFDNCHLHGGDKAGGATKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP 482
Query: 479 NGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMR 538
GVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTV+QLDSLRHQATQIVSMR
Sbjct: 483 TGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVNQLDSLRHQATQIVSMR 542
Query: 539 LSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPI 598
LSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVL G+IAVGKWFDQICNWKN I
Sbjct: 543 LSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLGGLIAVGKWFDQICNWKNSI 602
Query: 599 TTVLIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDEL 658
TTVLIHILF ILV+YPELILPT+FLYLFLIGVWY+RWRPRHPPHMDTRLSHADSAHPDEL
Sbjct: 603 TTVLIHILFFILVMYPELILPTIFLYLFLIGVWYFRWRPRHPPHMDTRLSHADSAHPDEL 662
Query: 659 DEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV 718
DEEFDTFPTSRPSD+VRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV
Sbjct: 663 DEEFDTFPTSRPSDVVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV 722
Query: 719 IFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
+FCL+AAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML
Sbjct: 723 LFCLVAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 777
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504837|ref|XP_003521201.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like isoform 1 [Glycine max] gi|356504839|ref|XP_003521202.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1475 bits (3818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 706/773 (91%), Positives = 747/773 (96%), Gaps = 1/773 (0%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+F LKETKPHLGGGK++GDKLTSTYDLVEQMQYLYVRVVKAKDLP KDVTGSCDP
Sbjct: 3 RPPPEDFLLKETKPHLGGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
Y EVK+GNYKGTTRHF+KK+NPEWNQVFAFSKDRIQ+S+LEVTVKDKD VKDDF+GRVLF
Sbjct: 63 YTEVKLGNYKGTTRHFDKKSNPEWNQVFAFSKDRIQASILEVTVKDKDVVKDDFIGRVLF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNEIPKRVPPDSPLAPQWYRLEDRKGDK +GELMLAVWMGTQADEAFPEAWHSDAATV+
Sbjct: 123 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKAKGELMLAVWMGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVN+IEAQDLQP+DKGR+PEV+VKA LGNQ LRTR+S S
Sbjct: 183 GTDALANIRSKVYLSPKLWYLRVNIIEAQDLQPSDKGRYPEVFVKAALGNQTLRTRISQS 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINPMWNEDLMFVAAEPFEE L L+VEDRVAPNK+E LGKC IPLQ VD+RLD KPVNT
Sbjct: 243 RTINPMWNEDLMFVAAEPFEEPLTLSVEDRVAPNKEESLGKCAIPLQMVDRRLDQKPVNT 302
Query: 302 RWYNLEKHIVV-EGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS 360
+WYN+EK+IV+ EGEKKK+ KF+S+IHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS
Sbjct: 303 KWYNIEKYIVIMEGEKKKEIKFSSKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS 362
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEV 420
IGVLELGILNAQGLMPMKTKDG+GTTDAYCVAKYGQKWVRTRTIIDS P+WNEQYTWEV
Sbjct: 363 IGVLELGILNAQGLMPMKTKDGKGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEV 422
Query: 421 FDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNG 480
FDPCTVITIGVFDNCHLHGGDK GGA+DS+IGKVRIRLSTLETDRVYTHSYPLLVL+PNG
Sbjct: 423 FDPCTVITIGVFDNCHLHGGDKPGGAKDSKIGKVRIRLSTLETDRVYTHSYPLLVLHPNG 482
Query: 481 VKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLS 540
VKKMGEIHLAVRFTCSSLLNMMHMYS PLLPKMHY+HPLTVSQLD+LRHQATQIVSMRLS
Sbjct: 483 VKKMGEIHLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLS 542
Query: 541 RAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPITT 600
RAEPPLRKE+VEYMLDVGSHMWSMRRSKANFFRIMGVL G+IAVGKWFDQICNWKNPITT
Sbjct: 543 RAEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMGVLGGLIAVGKWFDQICNWKNPITT 602
Query: 601 VLIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDE 660
VLIHILFIILV+YPELILPT+FLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDE
Sbjct: 603 VLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDE 662
Query: 661 EFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIF 720
EFDTFPT+RPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIF
Sbjct: 663 EFDTFPTTRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIF 722
Query: 721 CLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
CL+AAIVLYVTPFQ+VAL TG YVLRHPRFRHKLPSVPLNFFRRLPARTDCML
Sbjct: 723 CLVAAIVLYVTPFQIVALFTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 775
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572078|ref|XP_003554197.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1470 bits (3805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 704/773 (91%), Positives = 745/773 (96%), Gaps = 1/773 (0%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+F LKETKPHLGGGK++GDKLTSTYDLVEQMQYLYVRVVKAKDLP KDVTGSCDP
Sbjct: 3 RPPPEDFLLKETKPHLGGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
Y EVK+GNYKGTTRHFEKK+NPEWNQVFAFSKDRIQ+S+LEVTVKDKD VKDDF+GRVLF
Sbjct: 63 YTEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASILEVTVKDKDVVKDDFIGRVLF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNEIPKRVPPDSPLAPQWYRLEDRKGDK +GELMLAVWMGTQADEAFPEAWHSDAATV+
Sbjct: 123 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKAKGELMLAVWMGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVN+IEAQDLQP+DKGR+PEV+VKA LGNQ LRTR+S S
Sbjct: 183 GTDALANIRSKVYLSPKLWYLRVNIIEAQDLQPSDKGRYPEVFVKATLGNQTLRTRISQS 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINPMWNEDLMFVAAEPFEE LIL+VEDRVAPNK+E LG+C IPLQ VD+RLD KPVNT
Sbjct: 243 RTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKEESLGRCAIPLQMVDRRLDQKPVNT 302
Query: 302 RWYNLEKHIVV-EGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS 360
+WYN+EKHIV+ EGEKKK+ KF+S+IHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS
Sbjct: 303 KWYNIEKHIVIMEGEKKKEIKFSSKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS 362
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEV 420
IGVLELGIL+A GLMPMKTKDG+GTTDAYCVAKYGQKWVRTRTIIDS P+WNEQYTWEV
Sbjct: 363 IGVLELGILSAHGLMPMKTKDGKGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEV 422
Query: 421 FDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNG 480
FDPCTVITIGVFDNCHLHGGDK GG++DS+IGKVRIRLSTLETDRVYTHSYPLLVL PNG
Sbjct: 423 FDPCTVITIGVFDNCHLHGGDKPGGSKDSKIGKVRIRLSTLETDRVYTHSYPLLVLNPNG 482
Query: 481 VKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLS 540
VKKMGEIHLAVRFTCSSLLNMMHMYS PLLPKMHY+HPLTVSQLD+LRHQATQIVSMRLS
Sbjct: 483 VKKMGEIHLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLS 542
Query: 541 RAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPITT 600
RAEPPLRKE+VEYMLDVGSHMWSMRRSKANFFRIMGVL G+IAVGKWFDQICNWKNPITT
Sbjct: 543 RAEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMGVLGGLIAVGKWFDQICNWKNPITT 602
Query: 601 VLIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDE 660
VLIHILFIILV+YPELILPT+FLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDE
Sbjct: 603 VLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDE 662
Query: 661 EFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIF 720
EFDTFPT+R SDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIF
Sbjct: 663 EFDTFPTTRASDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIF 722
Query: 721 CLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
CL+AAIVLYVTPFQ+VAL TG YVLRHPRFRHKLPSVPLNFFRRLPARTDCML
Sbjct: 723 CLVAAIVLYVTPFQIVALFTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 775
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120414|ref|XP_002331042.1| predicted protein [Populus trichocarpa] gi|222872972|gb|EEF10103.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1469 bits (3804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 696/772 (90%), Positives = 739/772 (95%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
+PP ++F LKET PHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLP KDVTGSCDP
Sbjct: 4 KPPQDDFLLKETNPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDP 63
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTTRHFEKKTNPEWNQVFAFSK+RIQ+S+LEVTVKDKD VKDDF+GRVLF
Sbjct: 64 YVEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKERIQASMLEVTVKDKDLVKDDFIGRVLF 123
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
D+NEIPKRVPPDSPLAPQWYRLEDRKGDK +GELMLAVWMGTQADEAFPEAWHSDAATV+
Sbjct: 124 DMNEIPKRVPPDSPLAPQWYRLEDRKGDKFKGELMLAVWMGTQADEAFPEAWHSDAATVS 183
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVNVIEAQDL P+D+GR+PEVYVKA LGNQ LRTRVS S
Sbjct: 184 GTDSLANIRSKVYLSPKLWYLRVNVIEAQDLVPSDQGRYPEVYVKAILGNQVLRTRVSPS 243
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
R+INPMWNEDLMFVA+EPFEE LIL+VEDR+APNKDEVLG+C IP+ +VD+RLDH PVNT
Sbjct: 244 RSINPMWNEDLMFVASEPFEEPLILSVEDRIAPNKDEVLGRCAIPMHHVDRRLDHNPVNT 303
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSI 361
RW+NLEKH++VEGEKKK+ KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK SI
Sbjct: 304 RWFNLEKHVIVEGEKKKEIKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKHSI 363
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
GVLELGILNAQGLMPMK KDGRGTTDAYCVAKYGQKWVRTRTIIDS TPKWNEQYTWEVF
Sbjct: 364 GVLELGILNAQGLMPMKPKDGRGTTDAYCVAKYGQKWVRTRTIIDSFTPKWNEQYTWEVF 423
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
DPCTVITIGVFDNCHLHGGDK GG+RDSRIGKVRIRLSTLETDRVYTHSYPLLVL+ NGV
Sbjct: 424 DPCTVITIGVFDNCHLHGGDKPGGSRDSRIGKVRIRLSTLETDRVYTHSYPLLVLHRNGV 483
Query: 482 KKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSR 541
KKMGEIHLAVRFTCSSLLNMMHMYS PLLPKMHY+HPLTVSQLDSLRHQAT IVS+RLSR
Sbjct: 484 KKMGEIHLAVRFTCSSLLNMMHMYSHPLLPKMHYIHPLTVSQLDSLRHQATVIVSVRLSR 543
Query: 542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPITTV 601
+EPPLRKE+VEYMLDVGSHMWSMRRSKANFFRIM V G+IA+GKWFDQICNWKNPITTV
Sbjct: 544 SEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMNVFGGLIALGKWFDQICNWKNPITTV 603
Query: 602 LIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661
LIHILFIILVLYPELILPT+FLYLFLIGVW+YR R RHPPHMDTRLSHA+SAHPDELDEE
Sbjct: 604 LIHILFIILVLYPELILPTIFLYLFLIGVWHYRRRSRHPPHMDTRLSHAESAHPDELDEE 663
Query: 662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFC 721
FDTFPTS+ +DIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV+FC
Sbjct: 664 FDTFPTSQSADIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFC 723
Query: 722 LIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
LIAAIVLY+TPFQVVA+L G YVLRHPRFRHKLPSVPLNFFRRLPARTD ML
Sbjct: 724 LIAAIVLYITPFQVVAVLIGLYVLRHPRFRHKLPSVPLNFFRRLPARTDSML 775
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 773 | ||||||
| TAIR|locus:2095853 | 773 | AT3G57880 "AT3G57880" [Arabido | 0.997 | 0.997 | 0.878 | 0.0 | |
| TAIR|locus:2017627 | 776 | AT1G51570 [Arabidopsis thalian | 0.998 | 0.994 | 0.848 | 0.0 | |
| TAIR|locus:2182305 | 769 | AT5G12970 "AT5G12970" [Arabido | 0.984 | 0.989 | 0.788 | 0.0 | |
| TAIR|locus:2139727 | 1011 | AT4G11610 "AT4G11610" [Arabido | 0.987 | 0.754 | 0.670 | 8e-298 | |
| TAIR|locus:2162712 | 1036 | AT5G48060 "AT5G48060" [Arabido | 0.992 | 0.740 | 0.654 | 3.5e-288 | |
| TAIR|locus:2009492 | 1029 | AT1G22610 "AT1G22610" [Arabido | 0.992 | 0.745 | 0.641 | 5.9e-279 | |
| TAIR|locus:2127103 | 1006 | AT4G00700 "AT4G00700" [Arabido | 0.992 | 0.762 | 0.586 | 2.5e-255 | |
| TAIR|locus:2020280 | 1012 | AT1G04150 "AT1G04150" [Arabido | 0.968 | 0.740 | 0.588 | 8.6e-246 | |
| TAIR|locus:2119742 | 774 | AT4G20080 [Arabidopsis thalian | 0.976 | 0.975 | 0.571 | 5.1e-241 | |
| TAIR|locus:2098846 | 972 | AT3G61300 "AT3G61300" [Arabido | 0.968 | 0.770 | 0.569 | 4.6e-240 |
| TAIR|locus:2095853 AT3G57880 "AT3G57880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3671 (1297.3 bits), Expect = 0., P = 0.
Identities = 678/772 (87%), Positives = 723/772 (93%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+FSLKET+PHLGGGK++GDKLTSTYDLVEQMQYLYVRVVKAK+LP KD+TGSCDP
Sbjct: 3 RPPPEDFSLKETRPHLGGGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXXXMGRVLF 121
YVEVK+GNYKGTTRHFEKK+NPEWNQVFAFSKDRIQ+S LE T +GRV+F
Sbjct: 63 YVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGRVVF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNE+PKRVPPDSPLAPQWYRLEDRKGDKV+GELMLAVW GTQADEAFPEAWHSDAATV+
Sbjct: 123 DLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVNVIEAQDL PTDK R+PEVYVKA +GNQALRTRVS S
Sbjct: 183 GTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTRVSQS 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINPMWNEDLMFVAAEPFEE LIL+VEDRVAPNKDEVLG+C IPLQY+D+R DHKPVN+
Sbjct: 243 RTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHKPVNS 302
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSI 361
RWYNLEKHI+V+GEKK +TKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK +I
Sbjct: 303 RWYNLEKHIMVDGEKK-ETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNI 361
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
GVLELGILNA GLMPMKTKDGRGTTDAYCVAKYGQKW+RTRTIIDS TP+WNEQYTWEVF
Sbjct: 362 GVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVF 421
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
DPCTV+T+GVFDNCHLHGG+K GGA+DSRIGKVRIRLSTLETDRVYTHSYPLLVL+PNGV
Sbjct: 422 DPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGV 481
Query: 482 KKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSR 541
KKMGEIHLAVRFTCSSLLNMM+MYSQPLLPKMHY+HPLTVSQLD+LRHQATQIVSMRL+R
Sbjct: 482 KKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTR 541
Query: 542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPXXXX 601
AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSG+IAVGKWF+QICNWKNP
Sbjct: 542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTV 601
Query: 602 XXXXXXXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661
YPELILPT+FLYLFLIG+WYYRWRPRHPPHMDTRLSHADSAHPDELDEE
Sbjct: 602 LIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661
Query: 662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFC 721
FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV+FC
Sbjct: 662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFC 721
Query: 722 LIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
LIAA++LYVTPFQVVAL G Y LRHPRFR+KLPSVPLNFFRRLPARTDCML
Sbjct: 722 LIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
|
| TAIR|locus:2017627 AT1G51570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3568 (1261.1 bits), Expect = 0., P = 0.
Identities = 657/774 (84%), Positives = 711/774 (91%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+FSLKETKPHLGGGK+TGDKLT+TYDLVEQMQYLYVRVVKAK+LP KD+TGSCDP
Sbjct: 3 RPPPEDFSLKETKPHLGGGKVTGDKLTTTYDLVEQMQYLYVRVVKAKELPGKDLTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXXXMGRVLF 121
YVEVK+GNY+GTTRHFEKK+NPEWNQVFAFSKDR+Q+S LE T +GRV+F
Sbjct: 63 YVEVKLGNYRGTTRHFEKKSNPEWNQVFAFSKDRVQASYLEATVKDKDLVKDDLIGRVVF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNEIPKRVPPDSPLAPQWYRLED KG KV+GELMLAVW GTQADEAFPEAWHSDAATV+
Sbjct: 123 DLNEIPKRVPPDSPLAPQWYRLEDGKGQKVKGELMLAVWFGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVNVIEAQDL P+DKGR+PEV+VK +GNQALRTRVS S
Sbjct: 183 GTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPSDKGRYPEVFVKVIMGNQALRTRVSQS 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
R+INPMWNEDLMFV AEPFEE LIL+VEDRVAPNKDEVLG+C +PLQY+DKR D++PVN+
Sbjct: 243 RSINPMWNEDLMFVVAEPFEEPLILSVEDRVAPNKDEVLGRCAVPLQYLDKRFDYRPVNS 302
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSI 361
RW+NLEKH+++EG +KK+ KFAS+IHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK +I
Sbjct: 303 RWFNLEKHVIMEGGEKKEIKFASKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNI 362
Query: 362 GVLELGILNAQGLMPMKTKDG-RGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEV 420
GVLELG+LNA GLMPMK K+G RGTTDAYCVAKYGQKW+RTRTIIDS TP+WNEQYTWEV
Sbjct: 363 GVLELGVLNATGLMPMKAKEGGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEV 422
Query: 421 FDPCTVITIGVFDNCHLHGGDKA-GGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPN 479
FDPCTV+T+GVFDNCHLHGGDK GG +DSRIGKVRIRLSTLE DRVYTHSYPLLVL+P+
Sbjct: 423 FDPCTVVTVGVFDNCHLHGGDKNNGGGKDSRIGKVRIRLSTLEADRVYTHSYPLLVLHPS 482
Query: 480 GVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRL 539
GVKKMGEIHLAVRFTCSSLLNMM+MYS PLLPKMHYLHPLTVSQLD+LRHQATQIVS RL
Sbjct: 483 GVKKMGEIHLAVRFTCSSLLNMMYMYSMPLLPKMHYLHPLTVSQLDNLRHQATQIVSTRL 542
Query: 540 SRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPXX 599
+RAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWF+QIC WKNP
Sbjct: 543 TRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFEQICVWKNPIT 602
Query: 600 XXXXXXXXXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELD 659
YPELILPT+FLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELD
Sbjct: 603 TVLIHILFIILVIYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELD 662
Query: 660 EEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVI 719
EEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGER QSLLSWRDPRATALFV+
Sbjct: 663 EEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERFQSLLSWRDPRATALFVL 722
Query: 720 FCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
FCLIAA++LY+TPFQVVA G YVLRHPR R+KLPSVPLNFFRRLPARTDCML
Sbjct: 723 FCLIAAVILYITPFQVVAFAIGLYVLRHPRLRYKLPSVPLNFFRRLPARTDCML 776
|
|
| TAIR|locus:2182305 AT5G12970 "AT5G12970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3275 (1157.9 bits), Expect = 0., P = 0.
Identities = 605/767 (78%), Positives = 672/767 (87%)
Query: 7 EFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVK 66
+F+LKET P +G G +TGDKL STYDLVEQM YLYVRVVKAK+LP KDVTGSCDPYVEVK
Sbjct: 9 DFALKETSPKIGAGSVTGDKLCSTYDLVEQMHYLYVRVVKAKELPGKDVTGSCDPYVEVK 68
Query: 67 MGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXXXMGRVLFDLNEI 126
+GNY+G T+HFEK++NPEW QVFAFSK+RIQ+S+LEV +GR++FDLNEI
Sbjct: 69 LGNYRGMTKHFEKRSNPEWKQVFAFSKERIQASILEVVVKDKDVVLDDLIGRIMFDLNEI 128
Query: 127 PKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGL 186
PKRVPPDSPLAPQWYRLEDR G KV+GELMLAVWMGTQADEAF +AWHSDAATV G EG+
Sbjct: 129 PKRVPPDSPLAPQWYRLEDRHGRKVKGELMLAVWMGTQADEAFSDAWHSDAATV-GPEGV 187
Query: 187 ANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINP 246
+IRSKVYLSPKLWY+RVNVIEAQDL P DK +FPEVYVKA LGNQ LRTR+S ++T+NP
Sbjct: 188 THIRSKVYLSPKLWYVRVNVIEAQDLIPHDKTKFPEVYVKAMLGNQTLRTRISQTKTLNP 247
Query: 247 MWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306
MWNEDLMFV AEPFEE LIL VEDRVAPNKDE LG+C IPLQ V +RLDH+P+N+RW+NL
Sbjct: 248 MWNEDLMFVVAEPFEEALILAVEDRVAPNKDETLGRCAIPLQNVQRRLDHRPLNSRWFNL 307
Query: 307 EKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLEL 366
EKHI+VEGE+K + KFASRIH+RI LEGGYHVLDESTHYSSDLRPTAKQLWK SIG+LE+
Sbjct: 308 EKHIMVEGEQK-EIKFASRIHLRIFLEGGYHVLDESTHYSSDLRPTAKQLWKPSIGLLEV 366
Query: 367 GILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTV 426
GI++A GLMPMK+KDG+GTTDAYCVAKYGQKW+RTRTI+DS TPKWNEQYTWEVFD CTV
Sbjct: 367 GIISAHGLMPMKSKDGKGTTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQYTWEVFDTCTV 426
Query: 427 ITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGE 486
IT G FDN H+ GG +D RIGKVRIRLSTLE DR+YTHSYPLLV +P+G+KK GE
Sbjct: 427 ITFGAFDNGHIPGGS----GKDLRIGKVRIRLSTLEADRIYTHSYPLLVFHPSGIKKTGE 482
Query: 487 IHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSRAEPPL 546
I LAVRFTC SL+NM+HMYSQPLLPKMHY+HPL+V QLDSLRHQA IVS RL+RAEPPL
Sbjct: 483 IQLAVRFTCLSLINMLHMYSQPLLPKMHYIHPLSVLQLDSLRHQAMNIVSARLNRAEPPL 542
Query: 547 RKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPXXXXXXXXX 606
RKE+VEYMLDV SHMWSMRRSKANFFRIM VLSG+IAVGKWFDQICNW+NP
Sbjct: 543 RKEIVEYMLDVDSHMWSMRRSKANFFRIMNVLSGLIAVGKWFDQICNWRNPITTILIHVL 602
Query: 607 XXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFP 666
YPELILPTVFLYLFLIG+W +RWRPRHPPHMDTRLSHAD+ HPDELDEEFDTFP
Sbjct: 603 FIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAVHPDELDEEFDTFP 662
Query: 667 TSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAAI 726
TSR S+IVRMRYDRLRSI GR+QTV+GDLATQGER SLLSWRDPRAT LFV+FCLIAAI
Sbjct: 663 TSRSSEIVRMRYDRLRSIGGRVQTVIGDLATQGERFLSLLSWRDPRATTLFVLFCLIAAI 722
Query: 727 VLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
VLYVTPFQVVALL G YVLRHPRFRHKLPSVPLN FRRLPAR+D +L
Sbjct: 723 VLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNLFRRLPARSDSLL 769
|
|
| TAIR|locus:2139727 AT4G11610 "AT4G11610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2859 (1011.5 bits), Expect = 8.0e-298, P = 8.0e-298
Identities = 520/776 (67%), Positives = 635/776 (81%)
Query: 7 EFSLKETKPHLGGGKITG------DKL-TSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSC 59
+F+LKET PHLGGG++ G DK TSTYDLVE+M +LYVRVVKA++LP D+TGS
Sbjct: 240 DFALKETSPHLGGGRVVGGRVIHKDKTATSTYDLVERMYFLYVRVVKARELPIMDITGSV 299
Query: 60 DPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXXXMGRV 119
DP+VEV++GNYKG TRHFEK+ +PEWNQVFAF+K+R+Q+SVLEV +G V
Sbjct: 300 DPFVEVRVGNYKGITRHFEKRQHPEWNQVFAFAKERMQASVLEVVVKDKDLLKDDYVGFV 359
Query: 120 LFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAAT 179
FD+N++P RVPPDSPLAPQWYRLED+KG+K++GELMLAVW+GTQADEAF +AWHSDAA
Sbjct: 360 RFDINDVPLRVPPDSPLAPQWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAAM 419
Query: 180 VTGIEGL--ANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTR 237
A +RSKVY +P+LWY+RVNVIEAQDL PTDK RFP+VYVKAQLGNQ ++TR
Sbjct: 420 PVDCSPAISAVLRSKVYHAPRLWYVRVNVIEAQDLIPTDKTRFPDVYVKAQLGNQVMKTR 479
Query: 238 VSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHK 297
+RT+ +WNED +FV AEPFE+HL+LTVEDRVAP KDE++G+ IPL V+KR D
Sbjct: 480 PCQARTLGAVWNEDFLFVVAEPFEDHLVLTVEDRVAPGKDEIVGRTYIPLNTVEKRADDH 539
Query: 298 PVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLW 357
++ RWYNLE+ ++V+ ++ K KF+ RIH+R+CLEGGYHVLDESTHYSSDLRP+A+ LW
Sbjct: 540 MIHARWYNLERPVIVDVDQLKREKFSMRIHLRVCLEGGYHVLDESTHYSSDLRPSARPLW 599
Query: 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYT 417
+ IGVLELGILNA GL PMKT++GRGT+D +CV KYGQKWVRTRT++D+ PK+NEQYT
Sbjct: 600 RQPIGVLELGILNAVGLHPMKTREGRGTSDTFCVGKYGQKWVRTRTMVDNLCPKYNEQYT 659
Query: 418 WEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLY 477
WEVFDP TV+T+GVFDN L G+K G RD +IGK+RIRLSTLET R+YTHSYPLLVL+
Sbjct: 660 WEVFDPATVLTVGVFDNGQL--GEK--GNRDVKIGKIRIRLSTLETGRIYTHSYPLLVLH 715
Query: 478 PNGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSM 537
P GVKKMGE+H+AVRFTC S NM++ YS+PLLPKMHY+ P +V Q D LRHQA IV+
Sbjct: 716 PTGVKKMGELHMAVRFTCISFANMLYQYSKPLLPKMHYVRPFSVMQQDMLRHQAVNIVAA 775
Query: 538 RLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNP 597
RL RAEPPLRKE++E+M D SH+WSMR+SKANFFR+M V SG+IAVGKWF IC+W+NP
Sbjct: 776 RLGRAEPPLRKEIIEFMSDTDSHLWSMRKSKANFFRMMTVFSGVIAVGKWFSDICSWRNP 835
Query: 598 XXXXXXXXXXXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDE 657
PELILPT+FLY+FLIG+W YR+RPR+PPHM+T++S A++ HPDE
Sbjct: 836 ITTVLVHVLFLMLVCLPELILPTMFLYMFLIGLWNYRFRPRYPPHMNTKISQAEAVHPDE 895
Query: 658 LDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALF 717
LDEEFDTFPT+R D+VR+RYDRLRS+AGRIQTV+GDLATQGER Q+LLSWRDPRATA+F
Sbjct: 896 LDEEFDTFPTTRNPDMVRLRYDRLRSVAGRIQTVIGDLATQGERFQALLSWRDPRATAIF 955
Query: 718 VIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
VI C IAAIV ++TP Q+V L GF+ +RHPRFRH+LPSVP+NFFRRLPARTD ML
Sbjct: 956 VILCFIAAIVFFITPIQIVVALAGFFTMRHPRFRHRLPSVPVNFFRRLPARTDSML 1011
|
|
| TAIR|locus:2162712 AT5G48060 "AT5G48060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2768 (979.4 bits), Expect = 3.5e-288, P = 3.5e-288
Identities = 511/781 (65%), Positives = 633/781 (81%)
Query: 5 LEEFSLKETKPHLGG---GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
L++F +K+ LG G++ T TYDLVEQM YLYVRVVKAK+LPP +TG CDP
Sbjct: 258 LDDFKVKDMNLDLGERWPNPNAGERFTGTYDLVEQMFYLYVRVVKAKELPPGSITGGCDP 317
Query: 62 YVEVKMGNYKGTTRHFEKKTN-PEWNQVFAFSKDRIQSSVLEV-TXXXXXXXXXXXMGRV 119
YVEVK+GNYKG T+ F++KT PEWNQVFAF+K+RIQSSVLEV +G+V
Sbjct: 318 YVEVKLGNYKGRTKIFDRKTTIPEWNQVFAFTKERIQSSVLEVFVKDKETLGRDDILGKV 377
Query: 120 LFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK--VRGELMLAVWMGTQADEAFPEAWHSDA 177
+FDLNEIP RVPP+SPLAPQWYRLED +G+ VRGE+MLAVWMGTQADEAFPEAWH+D+
Sbjct: 378 VFDLNEIPTRVPPNSPLAPQWYRLEDWRGEGKVVRGEIMLAVWMGTQADEAFPEAWHADS 437
Query: 178 ATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTR 237
A+V G EG+ NIRSKVY+SPKLWYLRVNVIEAQD+ P+D+ R P+V+VKA +G Q L+T
Sbjct: 438 ASVHG-EGVFNIRSKVYVSPKLWYLRVNVIEAQDMIPSDRNRLPDVFVKASVGMQTLKTS 496
Query: 238 VSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHK 297
+ + +T NP+W EDL+FV AEPFEE L+++VEDRV +KDEV+GK +P+ +KRLDH+
Sbjct: 497 ICSIKTTNPLWKEDLVFVVAEPFEEQLVISVEDRVHTSKDEVIGKITLPMNVFEKRLDHR 556
Query: 298 PVNTRWYNLEKHI--VVEGE-KKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAK 354
PV++RW+NL+K+ V+E + ++K+ KF+SRIH+RICLEGGYHV+DEST Y SD RPTA+
Sbjct: 557 PVHSRWFNLDKYGTGVLEPDARRKEHKFSSRIHLRICLEGGYHVMDESTMYISDTRPTAR 616
Query: 355 QLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNE 414
QLWK +G+LE+GIL A GL+PMK KDGRG+T+AYCVAKYGQKWVRTRTI+D+ +P+WNE
Sbjct: 617 QLWKQPVGMLEIGILGANGLVPMKLKDGRGSTNAYCVAKYGQKWVRTRTILDTLSPRWNE 676
Query: 415 QYTWEVFDPCTVITIGVFDNCHLHGGDKAGGA--RDSRIGKVRIRLSTLETDRVYTHSYP 472
QYTWEV+DPCTVIT+GVFDN HL G ++G A RD+RIGKVRIRLSTLE ++YTHS+P
Sbjct: 677 QYTWEVYDPCTVITLGVFDNSHL-GSAQSGTADSRDARIGKVRIRLSTLEAHKIYTHSFP 735
Query: 473 LLVLYPNGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQAT 532
LLVL P+G+KK G++ ++VRFT SL N+++ Y PLLPKMHYL P TV+Q+D LR+QA
Sbjct: 736 LLVLQPHGLKKTGDLQISVRFTTLSLANIIYNYGHPLLPKMHYLFPFTVNQVDGLRYQAM 795
Query: 533 QIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQIC 592
IVS RL RAEPPLRKEVVEYMLDV SH+WSMRRSKANFFRIM +LSG VGKW + +C
Sbjct: 796 NIVSTRLGRAEPPLRKEVVEYMLDVDSHLWSMRRSKANFFRIMSLLSGYFLVGKWLEDVC 855
Query: 593 NWKNPXXXXXXXXXXXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADS 652
NW+ P YPELILPT+FLY+F IG+W +R RPRHPPHMD +LS A++
Sbjct: 856 NWRYPVTSVLVNVLFFILVMYPELILPTMFLYMFFIGLWNFRSRPRHPPHMDMKLSWAEA 915
Query: 653 AHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPR 712
PDELDEEFDTFPTSR ++VR+RYDRLRS+AGRIQTVVGD+A QGER+QSLLSWRDPR
Sbjct: 916 VGPDELDEEFDTFPTSRSQELVRLRYDRLRSVAGRIQTVVGDIAAQGERIQSLLSWRDPR 975
Query: 713 ATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCM 772
AT+LF++FCL A++VLY PF+ +AL +G Y LRHP+FR KLPS+P NFF+RLP+ TD +
Sbjct: 976 ATSLFILFCLAASVVLYAMPFKAIALASGLYYLRHPKFRSKLPSLPSNFFKRLPSSTDSL 1035
Query: 773 L 773
L
Sbjct: 1036 L 1036
|
|
| TAIR|locus:2009492 AT1G22610 "AT1G22610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2681 (948.8 bits), Expect = 5.9e-279, P = 5.9e-279
Identities = 506/789 (64%), Positives = 620/789 (78%)
Query: 1 MRPPLE---EFSLKETKPHLGGG-------KITGDKLTSTYDLVEQMQYLYVRVVKAKDL 50
M+PP + EF L ET P L + +GDK +STYDLVEQM YLYV VVKA+DL
Sbjct: 247 MQPPRQQNPEFQLIETSPPLAARMRQSYYYRSSGDKTSSTYDLVEQMHYLYVSVVKARDL 306
Query: 51 PPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXX 110
P DV+GS DPYVEVK+GNYKG T+H EK +NP W Q+FAFSK+R+QS++LEVT
Sbjct: 307 PVMDVSGSLDPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSNLLEVTVKDKDL 366
Query: 111 XXXXX-MGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWMGTQADEA 168
+GRV DL E+P RVPPDSPLAPQWYRLED+KG K RGE+MLAVWMGTQADE+
Sbjct: 367 LTKDDFVGRVHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMKTNRGEIMLAVWMGTQADES 426
Query: 169 FPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQ 228
FP+AWHSDA V+ L+N RSKVY SPKL+YLR++V+EAQDL P+DKGR P+ VK Q
Sbjct: 427 FPDAWHSDAHRVSH-SNLSNTRSKVYFSPKLYYLRIHVMEAQDLVPSDKGRVPDAIVKIQ 485
Query: 229 LGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQ 288
GNQ TR RT+NP W+E+LMFV +EPFE+ +I++V+DR+ P KDE+LG+ IP++
Sbjct: 486 AGNQMRATRTPQMRTMNPQWHEELMFVVSEPFEDMVIVSVDDRIGPGKDEILGRVFIPVR 545
Query: 289 YVDKRLD-HKPVNTRWYNLEKHIVV---EGEKKKDTKFASRIHMRICLEGGYHVLDESTH 344
V R + K + RW+NL++H + E EK+K+ KF+S+I +R+C+E GYHVLDESTH
Sbjct: 546 DVPVRQEVGKMPDPRWFNLQRHSMSMEEENEKRKE-KFSSKILLRVCIEAGYHVLDESTH 604
Query: 345 YSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTI 404
+SSDL+P++K L K SIG+LELGIL+A+ LMPMK KDGR TD YCVAKYG KWVRTRT+
Sbjct: 605 FSSDLQPSSKHLRKPSIGILELGILSARNLMPMKGKDGR-MTDPYCVAKYGNKWVRTRTL 663
Query: 405 IDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD 464
+D+ PKWNEQYTWEV DPCTVITIGVFDN H++ G G +D RIGKVR+RLSTLETD
Sbjct: 664 LDALAPKWNEQYTWEVHDPCTVITIGVFDNSHVNDG---GDFKDQRIGKVRVRLSTLETD 720
Query: 465 RVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQL 524
RVYTH YPLLVL P G+KK GE+ LA+R+TC+ +NMM Y +PLLPKMHY+ P+ V +
Sbjct: 721 RVYTHFYPLLVLTPGGLKKNGELQLALRYTCTGFVNMMAQYGRPLLPKMHYIQPIPVRHI 780
Query: 525 DSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAV 584
D LRHQA QIV+ RLSR+EPPLR+EVVEYMLDV HM+S+RRSKANF RIM +LS + V
Sbjct: 781 DLLRHQAMQIVATRLSRSEPPLRREVVEYMLDVDYHMFSLRRSKANFSRIMSLLSSVTLV 840
Query: 585 GKWFDQICNWKNPXXXXXXXXXXXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMD 644
KWF+ IC W+NP YPELILPTVFLYLF+IG+W YR+RPRHPPHMD
Sbjct: 841 CKWFNDICTWRNPITTCLVHVLFLILVCYPELILPTVFLYLFVIGMWNYRYRPRHPPHMD 900
Query: 645 TRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQS 704
R+S AD+AHPDELDEEFDTFPTSRP+DIVRMRYDRLRS+ GR+QTVVGDLATQGER+Q+
Sbjct: 901 ARVSQADNAHPDELDEEFDTFPTSRPADIVRMRYDRLRSVGGRVQTVVGDLATQGERIQA 960
Query: 705 LLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRR 764
LLSWRDPRATALF++F LI A+ +YVTPFQV+A++ G ++LRHPRFR ++PSVP NFF+R
Sbjct: 961 LLSWRDPRATALFIVFALIWAVFIYVTPFQVIAIIIGLFMLRHPRFRSRMPSVPANFFKR 1020
Query: 765 LPARTDCML 773
LPA++D +L
Sbjct: 1021 LPAKSDMLL 1029
|
|
| TAIR|locus:2127103 AT4G00700 "AT4G00700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2458 (870.3 bits), Expect = 2.5e-255, P = 2.5e-255
Identities = 460/784 (58%), Positives = 595/784 (75%)
Query: 3 PPLEEFSLKETKPHLGGGKITGDKL-------TS-TYDLVEQMQYLYVRVVKAKDLPPKD 54
PP +FS+KET P LGGG+I G ++ TS TYDLVE+M++LYVRVVKA+DLP KD
Sbjct: 227 PP--DFSVKETSPLLGGGRIVGGRVVRGTERPTSGTYDLVEEMKFLYVRVVKARDLPNKD 284
Query: 55 VTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXX 114
+TGS DPYV VK+GN+KG T HF K T+PEWNQVFAF+KD +QS+ LEV
Sbjct: 285 LTGSLDPYVVVKIGNFKGVTTHFNKNTDPEWNQVFAFAKDNLQSNFLEVMVKDKDILLDD 344
Query: 115 XMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWH 174
+G V FDL E+ RVPPDSPLAPQWYRLE+++G+K E+MLAVW GTQADEAF +A
Sbjct: 345 FVGIVKFDLREVQSRVPPDSPLAPQWYRLENKRGEKKNYEIMLAVWSGTQADEAFGDATF 404
Query: 175 SDAATVTGIEGL--ANIRSKVYLSPKLWYLRVNVIEAQD-LQPTDKGRFPEVYVKAQLGN 231
SD+ + + AN+RSKVY SP+LWYLRV ++EAQD + +DK R PEV+V+ ++GN
Sbjct: 405 SDSLVDSDSSNIISANLRSKVYHSPRLWYLRVQILEAQDVIIVSDKSRVPEVFVRVKVGN 464
Query: 232 QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVD 291
Q LRT+ R+ NP W ++ FV AEPFE++L+L+VED APN+DE +GK +I + ++
Sbjct: 465 QMLRTKFP-QRSNNPKWGDEFTFVVAEPFEDNLVLSVEDHTAPNRDEPVGKAVILMNDIE 523
Query: 292 KRLDHKPVNTRWYNLEKHI--VVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDL 349
KR+D KP + RW +LE I ++ +K K KFA+R+ + L+GGYHV DES + SSDL
Sbjct: 524 KRIDDKPFHDRWVHLEDSISDAMDVDKAKKVKFATRLRYKAVLDGGYHVFDESMYNSSDL 583
Query: 350 RPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPT 409
RP++++LWK +IGVLELGILNA MKT++G+GT+D Y VAKYG KWVR+RT+I+S
Sbjct: 584 RPSSRKLWKPAIGVLELGILNANVFHSMKTREGKGTSDTYVVAKYGHKWVRSRTVINSMN 643
Query: 410 PKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTH 469
PK+NEQYTWEVFDP TV+TI VFDN H GD G RD IGKVRIRLSTL+T RVYTH
Sbjct: 644 PKYNEQYTWEVFDPATVLTICVFDNAHFAAGD-GGNKRDQPIGKVRIRLSTLQTGRVYTH 702
Query: 470 SYPLLVLYPNGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRH 529
+YPLLVL P G+KK GE+HLAVRFTC+S+ +M+ Y++PLLPKMHY+ PL+ +Q ++L+
Sbjct: 703 AYPLLVLQPTGLKKRGELHLAVRFTCTSVSSMLMKYTKPLLPKMHYILPLSTNQQEALKM 762
Query: 530 QATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFD 589
QA I+ +RL R+EPPLR+EVV+Y+ D S ++SMRRSKANF R V SG ++V KW +
Sbjct: 763 QAINIIIVRLGRSEPPLRREVVDYLTDWKSQLFSMRRSKANFNRFTTVFSGALSVWKWME 822
Query: 590 QICNWKNPXXXXXXXXXXXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSH 649
Q+C WK P +PE+ILPTVFLY+ +IG+W YR++PR PPHMD +LS+
Sbjct: 823 QVCTWKTPVTTALVHVLYTMLVTFPEMILPTVFLYMAVIGMWNYRFKPRFPPHMDAKLSY 882
Query: 650 ADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWR 709
AD+ + DELDEEFDTFPT R DIV+MRYDRLRS+AG++Q+V GD+A QGER+Q+LLSWR
Sbjct: 883 ADNVNSDELDEEFDTFPTVRAPDIVKMRYDRLRSVAGKVQSVAGDIAAQGERVQALLSWR 942
Query: 710 DPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPART 769
DPRATA+FV FC I A+ LY+TPF++VALL+G+Y +RHP+ RH++PS P+NFFRRLPA T
Sbjct: 943 DPRATAIFVTFCFIIAMALYITPFKLVALLSGYYFMRHPKLRHRIPSAPVNFFRRLPAMT 1002
Query: 770 DCML 773
D ML
Sbjct: 1003 DSML 1006
|
|
| TAIR|locus:2020280 AT1G04150 "AT1G04150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2368 (838.6 bits), Expect = 8.6e-246, P = 8.6e-246
Identities = 465/790 (58%), Positives = 581/790 (73%)
Query: 7 EFSLKETKPHLGG-----GKITG--DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSC 59
EFSLKETKP LGG G ++ DK +STYDLVEQMQYLYV +VKAKDL V G
Sbjct: 241 EFSLKETKPCLGGTSNGLGGLSSHKDKTSSTYDLVEQMQYLYVNIVKAKDL---SVLG-- 295
Query: 60 DPYVEVKMGNYKGTTRHFEKKT-NPEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXXXMGR 118
+ EVK+GNY+G T+ + NPEWNQVF FSK+RIQSSV+E+ GR
Sbjct: 296 EVVSEVKLGNYRGVTKKVSSNSSNPEWNQVFVFSKERIQSSVVELFVKEGNKDEYT--GR 353
Query: 119 VLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAA 178
VLFDL+EIP RVPPDSPLAPQWY++E+R G + GELM++VW GTQADEAF EAWHS A
Sbjct: 354 VLFDLSEIPTRVPPDSPLAPQWYKIENRNGGRGNGELMVSVWFGTQADEAFAEAWHSKAG 413
Query: 179 TVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKG----RFPEVYVKAQLGNQAL 234
V IE L++I+SKVYLSPKLWYLR++VIEAQD+ DKG RFPE+ K Q+G+Q L
Sbjct: 414 NVH-IEELSSIKSKVYLSPKLWYLRISVIEAQDVAIMDKGSSLMRFPELSAKLQVGSQIL 472
Query: 235 RTRV-SASRT---INPMWNEDLMFVAAEPFEEHLILTVEDR-----VAPNKDEVLGKCMI 285
RT + SA T NP WNEDLMFV AEPFE+ + + VEDR + D +G+ I
Sbjct: 473 RTAIASAIPTKSFSNPYWNEDLMFVVAEPFEDCVTVVVEDRLNGGAIGGQNDVAVGRVQI 532
Query: 286 PLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHY 345
P+ V++R V +RW++L+ G + +F SRIH+R+ L+GGYHVLDE+T Y
Sbjct: 533 PISAVERRTGDTLVGSRWFSLDN-----GNN--NNRFGSRIHLRLSLDGGYHVLDEATMY 585
Query: 346 SSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGR--GTTDAYCVAKYGQKWVRTRT 403
+SD+RPTAK+LWK +G+LE+GIL+A GLMPMK +DG+ G D+YCVAKYG KWVRTRT
Sbjct: 586 NSDVRPTAKELWKPQVGLLEIGILSATGLMPMKVRDGKCGGIADSYCVAKYGPKWVRTRT 645
Query: 404 IIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET 463
++DS PKWNEQYTWEV+DPCTV+T+GVFDN ++ + + RD RIGKVRIRLSTLET
Sbjct: 646 VVDSLCPKWNEQYTWEVYDPCTVVTVGVFDNARVNENNNS---RDVRIGKVRIRLSTLET 702
Query: 464 DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQ 523
RVYTHSYPL+VL+P+GVKK GE+HLAVR +C + +NM+HMY+ PLLPKMHY PL V
Sbjct: 703 GRVYTHSYPLIVLHPSGVKKTGELHLAVRLSCGNAVNMLHMYALPLLPKMHYTQPLGVHM 762
Query: 524 LDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIA 583
L+ LR+Q V+ RLSRAEPPL +EVVEYMLD H+WSMRRSKANFFR++ V+SG++A
Sbjct: 763 LERLRYQTLNAVAARLSRAEPPLGREVVEYMLDHDFHVWSMRRSKANFFRLVNVISGLVA 822
Query: 584 VGKWFDQICNWKNPXXXXXXXXXXXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHM 643
V K + + +W P +PEL+LP + LY +GVW +R R R+PPHM
Sbjct: 823 VAKLVEVMRSWSKPVYSTVFVLAFLFMVLFPELLLPCLLLYTAAVGVWRFRRRSRYPPHM 882
Query: 644 DTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQ 703
D R+SHA++ PDELDEEFDTFPTSR D+VRMRYDR+RSIAGR+QTVVGD+A+QGER+Q
Sbjct: 883 DARISHAETVFPDELDEEFDTFPTSRGFDVVRMRYDRVRSIAGRVQTVVGDMASQGERVQ 942
Query: 704 SLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFR 763
+LLSWRDPRAT LF++FCL+AA+ Y P ++ ++G Y LR PRFR KLPS L+FFR
Sbjct: 943 ALLSWRDPRATFLFLMFCLLAAVGFYTVPVKLTVAISGLYYLRPPRFRRKLPSRGLSFFR 1002
Query: 764 RLPARTDCML 773
RLP+R D +L
Sbjct: 1003 RLPSRADSLL 1012
|
|
| TAIR|locus:2119742 AT4G20080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2323 (822.8 bits), Expect = 5.1e-241, P = 5.1e-241
Identities = 442/773 (57%), Positives = 572/773 (73%)
Query: 7 EFSLKETKPHLGGGKITG-DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEV 65
+FSLKET P++G G + G +KLTS++DLVE M +LY R+V+A+ LP D +V V
Sbjct: 14 DFSLKETSPNIGNGGVNGGEKLTSSFDLVEAMHFLYARIVRARALPVND------SFVAV 67
Query: 66 KMGNYKGTTRHF-EKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXX-XXXXXMGRVLFDL 123
K+G+YKG T+ NPE+++ FAF+K R+Q +LEV +G+ FD+
Sbjct: 68 KIGSYKGRTKQILNSNPNPEFHETFAFTKTRLQGDILEVVVRNRDNPNEDDIVGKCKFDV 127
Query: 124 NEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGI 183
EIP RVPPDSPLAPQWYRLEDR G K+ GE+M++VW+GTQADE F EAWHSD+A+VTG
Sbjct: 128 AEIPTRVPPDSPLAPQWYRLEDRNGVKIGGEIMVSVWIGTQADEVFSEAWHSDSASVTG- 186
Query: 184 EGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRF-PEVYVKAQLGNQALRTRVSASR 242
E + N RSKVYLSP+LWYLRVNVIEAQDL R PE+ +K LGN +R+R+S ++
Sbjct: 187 ENVVNTRSKVYLSPRLWYLRVNVIEAQDLVLLHPNRINPEILIKGFLGNVVVRSRISQTK 246
Query: 243 TINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTR 302
+++P+WNED+MFVA EPF++ LIL+VED+V P ++E LG+C I L V++R+ PV +
Sbjct: 247 SVSPVWNEDMMFVAVEPFDDSLILSVEDKVGP-REECLGRCEIKLSQVERRVLPGPVPSL 305
Query: 303 WYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIG 362
WYN+E HI GE + +FA RIH+R+ L+GGYHVLDES YSSD R +AK LW IG
Sbjct: 306 WYNVE-HI---GETGEGRRFAGRIHLRVSLDGGYHVLDESIQYSSDYRASAKLLWTPPIG 361
Query: 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD 422
VLELG+LNA GLMPMK++ GRGTTDAYCVAKYG KWVRTRTI+D+ PKWNEQYTWEV+D
Sbjct: 362 VLELGVLNATGLMPMKSRGGRGTTDAYCVAKYGTKWVRTRTIVDTFDPKWNEQYTWEVYD 421
Query: 423 PCTVITIGVFDNCHLHG-GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
P TVITIGVFDN L G G++ DSRIGK+RIRLSTL T ++YTHSYPL+VL P+GV
Sbjct: 422 PYTVITIGVFDNLKLFGAGNENRLINDSRIGKIRIRLSTLVTSKIYTHSYPLMVLKPDGV 481
Query: 482 KKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSR 541
KKMGEI LAVRFT +S+++M+ Y++PLLP+MHY+ PL++ QLDSLRHQAT I+ + L R
Sbjct: 482 KKMGEIQLAVRFTATSMMDMLQKYTEPLLPEMHYISPLSIYQLDSLRHQATHILCINLGR 541
Query: 542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPXXXX 601
EP L ++VVEYMLDVGS++WS+RR +ANF R++ G I KWFD+IC WK+P
Sbjct: 542 NEPALGRDVVEYMLDVGSNIWSLRRGRANFERLVSFFDGWIDAWKWFDEICKWKSPVTSV 601
Query: 602 XXXXXXXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661
P+ + ++ LY F+ G++ + RPRHPPHMD +LS ADSA PDELDEE
Sbjct: 602 LVHIVCLFVVFLPKYCVFSMLLYCFVFGLYRFGLRPRHPPHMDIKLSKADSALPDELDEE 661
Query: 662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFC 721
FD FP+S+ D+++ RYDRLR IAGR+ V+GDLATQGER++SLLSWRDPRAT+LF+ FC
Sbjct: 662 FDVFPSSKSGDVLKRRYDRLRGIAGRMMIVLGDLATQGERVKSLLSWRDPRATSLFLTFC 721
Query: 722 LIAAIVLYVTPFQVVALLTGFYVLRHPRFR-HKLPSVPLNFFRRLPARTDCML 773
++ V+ +++ FYV+RHPR R +PS+P NFFRRLP+R D +L
Sbjct: 722 FVSCGVICFVSMKLLLTFLAFYVMRHPRVRVFDIPSIPQNFFRRLPSRADSIL 774
|
|
| TAIR|locus:2098846 AT3G61300 "AT3G61300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2314 (819.6 bits), Expect = 4.6e-240, P = 4.6e-240
Identities = 443/778 (56%), Positives = 571/778 (73%)
Query: 3 PPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPY 62
P ++S+KETKP LGGGK +S +DLVE M++L++++VKA++LP D+TGS DPY
Sbjct: 217 PNPPDYSIKETKPILGGGKRAR---SSDHDLVEPMEFLFIKIVKARNLPSMDLTGSLDPY 273
Query: 63 VEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXXXMGRVLFD 122
+EVK+GNY G T+HFEK NP WN+VFAFSK QS+VLEV +G + FD
Sbjct: 274 IEVKLGNYTGKTKHFEKNQNPVWNEVFAFSKSNQQSNVLEVIVMDKDMVKDDFVGLIRFD 333
Query: 123 LNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTG 182
LN+IP RV PDSPLAP+WYR+ + KG GE+MLAVW GTQADEAF +A +SDA
Sbjct: 334 LNQIPTRVAPDSPLAPEWYRVNNEKG----GEIMLAVWFGTQADEAFSDATYSDALNAVN 389
Query: 183 IEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPT-DKGRFPEVYVKAQLGNQALRTRVSAS 241
+++RSKVY SP+LWYLRVNVIEAQDL D+ R P YVK +L NQ +RT+ S S
Sbjct: 390 ---KSSLRSKVYHSPRLWYLRVNVIEAQDLVIVPDRTRLPNPYVKIRLNNQVVRTKPSHS 446
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLD-HKPVN 300
+NP WNE+ VAAEPFE+ LI+++EDRVAPN++E LG+ IP+ +DKR+D ++ V
Sbjct: 447 --LNPRWNEEFTLVAAEPFED-LIISIEDRVAPNREETLGEVHIPIGTIDKRIDDNRTVP 503
Query: 301 TRWYNLEKHIVVEGEKKKDTKFAS-RIHMRICLEGGYHVLDESTHYSSDLRPTAKQLW-- 357
RW++L+ E ++ +FA+ R+H+ +CLEGGYHVLDEST+YSSD RP+ K+L
Sbjct: 504 NRWFSLKT------ENQRRVRFATTRLHLNVCLEGGYHVLDESTYYSSDFRPSMKELLSH 557
Query: 358 -KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQY 416
+ S GVLELGIL +GL + + + T DAYCVAKYG KWVRTRT+ + P++NEQY
Sbjct: 558 KQPSFGVLELGILRIEGLN-LSQEGKKETVDAYCVAKYGTKWVRTRTVTNCLNPRFNEQY 616
Query: 417 TWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476
TWEV++P TVITIGVFDN ++ G+ G D +IGK+R+R+STLE R+Y+HSYPLLVL
Sbjct: 617 TWEVYEPATVITIGVFDNNQINSGN--GNKGDGKIGKIRVRISTLEAGRIYSHSYPLLVL 674
Query: 477 YPNGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVS 536
P+G+KKMGE+HLA+RF+CSS+ M+ Y +PLLPKMHY PL V Q + LR A +V+
Sbjct: 675 RPSGLKKMGELHLAIRFSCSSMFQMLMQYWKPLLPKMHYARPLKVVQQEILRQHAVNLVA 734
Query: 537 MRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKN 596
RLSRAEPPLRKEVVEY+ D SH+WSMR+S+AN FR+ V SG++ G+WF IC WK
Sbjct: 735 ARLSRAEPPLRKEVVEYISDSNSHLWSMRKSRANLFRLSSVFSGLLGTGEWFQDICRWKK 794
Query: 597 PXXXXXXXXXXXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPD 656
P PE+ILP + L LF++GVW YR RPR PPHMDTRLS AD+ HP+
Sbjct: 795 PVETTAIHIIFLVLVCSPEMILPVMSLCLFMLGVWNYRLRPRQPPHMDTRLSFADNIHPE 854
Query: 657 ELDEEFDTFP-TSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATA 715
EL+EEFDTFP +S+ IV+MRY+RLRSIA R QTVVGD+A QGER+Q+LLSWRDPRAT+
Sbjct: 855 ELNEEFDTFPFSSQDPGIVKMRYERLRSIASRAQTVVGDIAGQGERVQALLSWRDPRATS 914
Query: 716 LFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
+F++ CL++ +VLYV PF+V LL G Y++R PRFR K P P+NFFRRLPA+TDCML
Sbjct: 915 IFMVLCLVSTVVLYVVPFKVFVLLAGLYIMRPPRFRGKTPPGPINFFRRLPAKTDCML 972
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 773 | |||
| pfam08372 | 156 | pfam08372, PRT_C, Plant phosphoribosyltransferase | 1e-114 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 1e-89 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 2e-71 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 2e-65 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 3e-24 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 6e-24 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 1e-23 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 5e-21 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 5e-20 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 2e-18 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 3e-18 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 1e-17 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-17 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 1e-16 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 3e-16 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 9e-16 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-15 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 5e-15 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 1e-14 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 3e-14 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 6e-14 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 1e-13 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 2e-13 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 2e-13 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 3e-13 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 4e-13 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 7e-13 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 9e-13 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-12 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 2e-12 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 3e-12 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 4e-12 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 4e-12 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 7e-12 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 1e-11 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 3e-11 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 3e-11 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 5e-11 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 6e-11 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 8e-11 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 2e-10 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 2e-10 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 3e-10 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 4e-10 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 5e-10 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 8e-10 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 1e-09 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 2e-09 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 2e-09 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 2e-09 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 3e-09 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 3e-09 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 5e-09 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 8e-09 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 1e-08 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 2e-08 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 3e-08 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 4e-08 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 5e-08 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 8e-08 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 1e-07 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 1e-07 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-07 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 2e-07 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 2e-07 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 2e-07 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-07 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 2e-07 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 3e-07 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 4e-07 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 6e-07 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 7e-07 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 9e-07 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 1e-06 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 1e-06 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 2e-06 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 2e-06 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 2e-06 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 2e-06 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 2e-06 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 2e-06 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 3e-06 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 3e-06 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 3e-06 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 4e-06 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 5e-06 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 5e-06 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 5e-06 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 5e-06 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 6e-06 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 6e-06 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 8e-06 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 8e-06 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 1e-05 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 1e-05 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 1e-05 | |
| cd08401 | 121 | cd08401, C2A_RasA2_RasA3, C2 domain first repeat p | 1e-05 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 2e-05 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 2e-05 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 4e-05 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 4e-05 | |
| cd04014 | 132 | cd04014, C2_PKC_epsilon, C2 domain in Protein Kina | 9e-05 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 1e-04 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 1e-04 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 1e-04 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 1e-04 | |
| pfam06398 | 360 | pfam06398, Pex24p, Integral peroxisomal membrane p | 1e-04 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 1e-04 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 2e-04 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 2e-04 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 2e-04 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 2e-04 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 3e-04 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 3e-04 | |
| cd08400 | 126 | cd08400, C2_Ras_p21A1, C2 domain present in RAS p2 | 3e-04 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 4e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 4e-04 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 5e-04 | |
| cd08394 | 127 | cd08394, C2A_Munc13, C2 domain first repeat in Mun | 5e-04 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 9e-04 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 0.001 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.001 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 0.001 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 0.002 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 0.002 | |
| cd08407 | 138 | cd08407, C2B_Synaptotagmin-13, C2 domain second re | 0.002 | |
| cd04048 | 120 | cd04048, C2A_Copine, C2 domain first repeat in Cop | 0.002 | |
| cd04015 | 158 | cd04015, C2_plant_PLD, C2 domain present in plant | 0.003 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 0.003 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 0.004 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 0.004 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.004 |
| >gnl|CDD|192017 pfam08372, PRT_C, Plant phosphoribosyltransferase C-terminal | Back alignment and domain information |
|---|
Score = 341 bits (876), Expect = e-114
Identities = 131/156 (83%), Positives = 149/156 (95%)
Query: 618 LPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMR 677
LPT+FLYLF+IG+W YR+RPRHPPHMDTRLSHAD+AHPDELDEEFDTFPTSRP D+VRMR
Sbjct: 1 LPTIFLYLFVIGLWNYRFRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRPPDVVRMR 60
Query: 678 YDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVA 737
YDRLRS+AGR+QTVVGD+ATQGERLQ+LLSWRDPRATA+FV+FCL+AA+VLYV PF+VVA
Sbjct: 61 YDRLRSVAGRVQTVVGDIATQGERLQALLSWRDPRATAIFVLFCLVAAVVLYVVPFKVVA 120
Query: 738 LLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773
LL GFY LRHPRFR ++PSVPLNFFRRLP+RTD ML
Sbjct: 121 LLAGFYYLRHPRFRSRMPSVPLNFFRRLPSRTDSML 156
|
This domain is found at the C-terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (pfam00168). Length = 156 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 278 bits (712), Expect = 1e-89
Identities = 105/151 (69%), Positives = 126/151 (83%), Gaps = 1/151 (0%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
YLRV VIEAQDL P+DK R PEV+VKAQLGNQ LRTR S +R NP WNE+LMFVAAEPF
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDT 320
E+HLIL+VEDRV PNKDE LG+ +IPL +++R+D +PV +RW++LE+ +KKK
Sbjct: 61 EDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKR- 119
Query: 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRP 351
KFASRIH+R+CL+GGYHVLDESTHYSSDLRP
Sbjct: 120 KFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 2e-71
Identities = 89/125 (71%), Positives = 102/125 (81%), Gaps = 4/125 (3%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQS 98
YLYVRVVKA+ LP S DP VEVK+GNYKG+T+ E+ +NPEWNQVFAFSKDR+Q
Sbjct: 1 YLYVRVVKARGLP----ANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQG 56
Query: 99 SVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLA 158
S LEV+V DKD KDDF+G V FDL+E+P RVPPDSPLAPQWYRLED+KG +V GELMLA
Sbjct: 57 STLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLA 116
Query: 159 VWMGT 163
VW GT
Sbjct: 117 VWFGT 121
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 213 bits (543), Expect = 2e-65
Identities = 88/128 (68%), Positives = 100/128 (78%), Gaps = 2/128 (1%)
Query: 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD 422
+LE+GIL AQGL ++ KDGRG+TDAYCVAKYG KWVRTRT+ DS P+WNEQYTW V+D
Sbjct: 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD 60
Query: 423 PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK 482
PCTV+T+GVFDN H K D IGKVRIRLSTLE DRVY HSYPLL L P+GVK
Sbjct: 61 PCTVLTVGVFDNSQSH--WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVK 118
Query: 483 KMGEIHLA 490
KMGE+ A
Sbjct: 119 KMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 3e-24
Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQS 98
L V V++A++LP KD+ G DPYV+V +G K T+ + NP WN+ F F +S
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 99 SVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143
L V V DKD F KDDF+G V L+E+ W L
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEG----ELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 6e-24
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG---TTRHFEKKTNPEWNQVFAFSKDRI 96
L V V+ AK+LPPKD+ G DPYV+V +G K T+ + NP WN+ F F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 97 QSSVLEVTVKDKD-FVKDDFMGRV 119
+ + L + V D D F KDDF+G V
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEV 84
|
Length = 85 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 1e-23
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY---KGTTRHFEKKTNPEWNQVFAFSKDR 95
L V+++ A++LPPKD G DPYV+V + K T+ + NP WN+ F F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 96 IQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPD 133
+ + LE+ V DKD F +DDF+G+V L+++ +
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 5e-21
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQ---ALRTRVSASRTINPMWNEDLMFVAAE 258
LRV VI A++L P D + YVK LG Q +T+V T+NP+WNE F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKV-VKNTLNPVWNETFTFEVTL 59
Query: 259 PFEEHLILTVEDRVAPNKDEVLGKC 283
P L + V D KD+ +G+
Sbjct: 60 PELAELRIEVYDYDRFGKDDFIGEV 84
|
Length = 85 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 5e-20
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQS 98
+L V+V++A L D+ G DP+ +++ N + T K NPEWN++F F I
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH- 60
Query: 99 SVLEVTVKDKDFVKD-DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELM 156
VLEVTV D+D K +F+G+V L I +WY L+D+K + +G ++
Sbjct: 61 DVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE-------RKWYALKDKKLRTRAKGSIL 113
Query: 157 L 157
L
Sbjct: 114 L 114
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 2e-18
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVFAFSKDRI 96
L VRV++A ++ D+ + D YVE+ + + K T+ + NP WN+ F F
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ 61
Query: 97 QSSVLEVTVKDKDFVKDDFMGRVLFDLNEIP 127
+VLE+TV D+D+V DD +G VLFD++++
Sbjct: 62 VKNVLELTVMDEDYVMDDHLGTVLFDVSKLK 92
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 3e-18
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-QALRTRVSASRTINPMWNEDLMFVAAEPF 260
LRV VIEA++L D + YVK LG Q +T+V T+NP+WNE F +P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKV-VKNTLNPVWNETFEFPVLDPE 59
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306
+ L + V D+ +KD+ LG+ IPL + W L
Sbjct: 60 SDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDS---GKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 1e-17
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 40 LYVRVVKAKDLPPKDV--TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQ 97
L V VV+AKDL KD G DPY + +G + T+ NP+WN F Q
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62
Query: 98 SSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK---VRG 153
+ +L++ + DKD F D++G L E+ + + +W L+ + K V G
Sbjct: 63 NQLLKLILWDKDRFAGKDYLGEFDIALEEV--FADGKTGQSDKWITLKSTRPGKTSVVSG 120
Query: 154 ELML 157
E+ L
Sbjct: 121 EIHL 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 47/128 (36%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKD---RI 96
L V VV A+DL PKD GS YVE+ K TR K NP WN+ F+ R+
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61
Query: 97 QSSVLEVTVKDK--DFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRG 153
+ VLEV V + + F+GRV P S Q Y LE R +VRG
Sbjct: 62 SNLVLEVYVYNDRRSGRRRSFLGRVRISGTS----FVPPSEAVVQRYPLEKRGLFSRVRG 117
Query: 154 ELMLAVWM 161
E+ L V++
Sbjct: 118 EIGLKVYI 125
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-16
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 19/116 (16%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAFS-- 92
L V V++A+DLPP+D +PYV+V + K T+ +K NPEWNQ F +S
Sbjct: 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77
Query: 93 -KDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPL--APQWYRLE 144
++ ++ LEVTV D D ++DF+G V+ DL D+ L P WY L+
Sbjct: 78 RRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA--------DALLDDEPHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 3e-16
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQ---ALRTRVSASRTINPMWNEDLMFVAA 257
L V +I A++L P DKG + YVK L +T+V T+NP+WNE F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKV-VKNTLNPVWNETFEFEVP 59
Query: 258 EPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKP 298
P L + V D+ +D+ +G+ IPL + H+
Sbjct: 60 PPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEK 100
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 9e-16
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSS 99
L V++A+DL PKD G+ DP+V V T +K P WN+VF F S
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61
Query: 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL--EDRKGDKVRGEL 155
L V V D D V K+DF+G+V+F + + + + W+RL + R ++ G L
Sbjct: 62 PLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEG-----WFRLLPDPRAEEESGGNL 115
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-15
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 44 VVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEV 103
+V+ K+LPP D G DPYV+ ++GN K ++ K NP+W + F QS +LE+
Sbjct: 6 LVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65
Query: 104 TVKDKDF-VKDDFMGRVLFDLNEIPK 128
V DKD KD+F+GR DL+ +P+
Sbjct: 66 EVWDKDTGKKDEFIGRCEIDLSALPR 91
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 5e-15
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 11/112 (9%)
Query: 40 LYVRVVKAKDLPPKD------VTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSK 93
L + V++A+DL KD V G DPYV V++G ++ ++ NP+WN+V+
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVV 62
Query: 94 DRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145
D + LE+ + D+D KDDF+GR+ DL + K +W LED
Sbjct: 63 DEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEK-----KGFIDEWLPLED 109
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-14
Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQS- 98
L VRVV+ +L +D T S DPYV + +GN K TR +K NP WN+ S + +
Sbjct: 4 LKVRVVRGTNLAVRDFTSS-DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLS---VPNP 59
Query: 99 -SVLEVTVKDKD-FVKDDFMGRVLFDL 123
+ L++ V DKD F KDD MG DL
Sbjct: 60 MAPLKLEVFDKDTFSKDDSMGEAEIDL 86
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-14
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 26/127 (20%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFE--KKTN-PEWNQVFAF---- 91
L VRV++ +DL K G+CDP+ V + K T+ + KKTN P +++ F F
Sbjct: 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 92 --SKDRIQS---------SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQ 139
S ++ S L V + V DDF+G V L + + +
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQA----- 114
Query: 140 WYRLEDR 146
WY L+ R
Sbjct: 115 WYFLQPR 121
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 6e-14
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWV---RTRTIIDSPTPKWNEQYTWEV 420
L + +++A+ L P D G +D Y G + +T+ + ++ P WNE +T+EV
Sbjct: 1 LRVTVISAKNLPPK---DLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEV 57
Query: 421 FDP-CTVITIGVFDNCHLHGGDKAGGARDSRIGKVR 455
P + I V+D +D IG+V
Sbjct: 58 TLPELAELRIEVYDYDRFG--------KDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-13
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVFAF---SK 93
L ++++KA +LP KD +G+ DP+V++ + +K T+ K NP WN+ F F
Sbjct: 18 LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 77
Query: 94 DRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEI 126
+++Q VL + V D D F ++D +G V LN++
Sbjct: 78 EKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKV 111
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-13
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-QKWVRTRTIIDSPTPKWNEQYTWEVFD 422
L + ++ A+ L D G +D Y G ++ +T+ + ++ P WNE + + V D
Sbjct: 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLD 57
Query: 423 P-CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR-VYTHSYPL 473
P +T+ V+ DK ++D +G+V I LS L PL
Sbjct: 58 PESDTLTVEVW--------DKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 2e-13
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 42 VR--VVKAKDLPPKDVTGSCDPYVEVKMGNYK-GTTRHFEKKT-NPEWNQVFAFSKDRIQ 97
VR VV+A++L PKD G DPY+++K+G K ++ T NP + ++F
Sbjct: 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG 61
Query: 98 SSVLEVTVKDKDFV-KDDFMGRVLFDL 123
+S+L+++V D D + DD +G + DL
Sbjct: 62 NSILKISVMDYDLLGSDDLIGETVIDL 88
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-13
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 40 LYVRVVKAKDLPPKD-VTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWN-QVFAFSKD--R 95
L VRVV A+DLP D + D +VEVK G+ T +K NP WN + F F D
Sbjct: 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60
Query: 96 IQSSVLEVTVKDKD-FVKDDFMGRVLFDLN 124
+Q L++ V D D + +D +G+V DLN
Sbjct: 61 LQDEPLQIRVMDHDTYSANDAIGKVYIDLN 90
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 4e-13
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Query: 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYKGTTR--HFEKKT 81
+LT Y Q Q L V V K ++LPP D + DPYV + + K T R +K
Sbjct: 6 QLTIRYS--SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDN 63
Query: 82 -NPEWNQVFAF--SKDRIQSSVLEVTVKDKD--FVKD-DFMGRVLFDLNEIPKRVPPDSP 135
NP +++ F F S + ++ L+V VK+ ++ +G+VL DL+++ S
Sbjct: 64 LNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL-----DLSK 118
Query: 136 LAPQWYRLE 144
QWY L
Sbjct: 119 GFTQWYDLT 127
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 7e-13
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 22/125 (17%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL------GNQALRTRVSASRTIN 245
+LWY L V V++A+DL P D G YVK L ++ RT+ +T+N
Sbjct: 8 QLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKR-RTKTVK-KTLN 65
Query: 246 PMWNEDLMF--VAAEPFEEHLI-LTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTR 302
P WN+ + V E +E + +TV D +++ LG+ +I L D LD +P
Sbjct: 66 PEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA--DALLDDEP---H 120
Query: 303 WYNLE 307
WY L+
Sbjct: 121 WYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 9e-13
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSS 99
L V +V+ +DL P + G DPY EV MG+ + T+ NP+WN F ++
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQD 76
Query: 100 VLEVTVKDKD-FVKDDFMGRVLFDLNEIPK 128
VL +TV D+D F DDF+GR + +I K
Sbjct: 77 VLCITVFDRDFFSPDDFLGRTEIRVADILK 106
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-12
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWE 419
L + I++A+ L P D G +D Y + +T+ + ++ P WNE + +E
Sbjct: 1 TLTVKIISARNLPPK---DKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE 57
Query: 420 VFDPCT-VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET 463
V P + I V+D RD IG+V I LS L
Sbjct: 58 VPPPELAELEIEVYDKDRFG--------RDDFIGQVTIPLSDLLL 94
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-12
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 13/115 (11%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAFS-K 93
L V V +AK+L P D G DPYV++K+ K T+ +K NP WN+ F F K
Sbjct: 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74
Query: 94 DRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147
+ L + V D D ++DFMG + F ++E+ K P D WY+L +++
Sbjct: 75 PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDG-----WYKLLNQE 123
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-12
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 12/95 (12%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEV-------KMGNYKGTTRHFEKKTNPEWNQVFAF- 91
L V V+KA++LPP D G DPYV+V K+ K + + NP +N+ F+F
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK--GTLNPVFNEAFSFD 73
Query: 92 -SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLN 124
++++ L +TV DKD +++ +G+V+ +
Sbjct: 74 VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPD 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 4e-12
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAF------- 91
Y+Y +A+DL D +G DP+ V N T ++ +P W+Q F
Sbjct: 6 YIY----QARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYG 61
Query: 92 SKDRIQSS----VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVP-PDSPLAPQWYRLED 145
S + I + V+E+ D+D V KD+F+GR + + K D P QW+ +
Sbjct: 62 SPEEIAQNPPLVVVELF--DQDSVGKDEFLGRSVAK--PLVKLDLEEDFPPKLQWFPI-- 115
Query: 146 RKGDKVRGELMLAV 159
KG + GEL+ A
Sbjct: 116 YKGGQSAGELLAAF 129
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-12
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-------GNYKGTTRHFEKKT-NPEWNQVF 89
Q L V ++ A++L P D GS DP+V+V++ T+ +KKT P +++ F
Sbjct: 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQ-VKKKTLFPLFDESF 74
Query: 90 AFS----KDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQ 139
F+ + ++ ++L TVKD D + +DF G LN+IP S
Sbjct: 75 EFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVEDTSSAQGFG 129
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 7e-12
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRI 96
L + + + ++L +D G+ DPYV+ K G YK T + K NP W++ F + +
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY--KNLNPVWDEKFTLPIEDV 59
Query: 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGEL 155
+ L + V D D DDFMG DL+ + P + L +LED D+ G +
Sbjct: 60 -TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKL-----KLEDPNSDEDLGYI 113
Query: 156 MLAV 159
L V
Sbjct: 114 SLVV 117
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-11
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAF----SKDR 95
+ + VV A+ L KD TG+ DPYV V++G K T+ + NP WN+ F F S DR
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62
Query: 96 IQSSVLEVTVKDKDFVK-------DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146
I+ V + K +K DDF+G+ + ++ + S WY LE R
Sbjct: 63 IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL-------SGEMDVWYNLEKR 113
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-11
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 16/120 (13%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQALRTRVSASR--TINPMWNEDLMF-VA 256
L V V++A++L P+D + YVK L G + L+ + ++ + T+NP++NE F V
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 257 AEPFEE-HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH---------KPVNTRWYNL 306
AE EE L++TV D+ + ++EV+G+ ++ + L+H KP+ RW+ L
Sbjct: 76 AEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPI-ARWHKL 134
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-11
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYKGT---TRHFEKKTNPEWNQVFAF--- 91
L+ +++AK L D G DPYV++ + G K T T+ K NPE+N+ +
Sbjct: 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76
Query: 92 SKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDL-NEIPKRV 130
+++ IQ L + V D+D +DF+G L P +
Sbjct: 77 TEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQT 116
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 5e-11
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGT-------TRHFEKKTNPEWNQVFAFS 92
L V+V+ DL KD+ G+ DPYV++ + + G T+ +K NP+WN+ F F
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 93 KDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVP-PDSPLAPQWYRLEDR--KGD 149
+ + +L + +DDF+G+V LN +P P + + Y L R K
Sbjct: 62 VNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS- 120
Query: 150 KVRGELML 157
+V+G L L
Sbjct: 121 RVKGHLRL 128
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-11
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQ 87
YD Q L V +++A DLP D+ G+ DPYV+V + K T+ K NP +N+
Sbjct: 11 YDF--QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 68
Query: 88 VFAFS--KDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEI 126
F F + + L +V D D F K D +G V L +
Sbjct: 69 TFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 8e-11
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 19/113 (16%)
Query: 368 ILNAQGLMPMKTKDGRGTTDAYCVAKY-GQKWVRTRTIIDSPTPKWNEQYTWEVFDPCT- 425
+++AQ LMP KDG+G++ AY + GQK RTRT P WNE+ + V DP
Sbjct: 6 VVDAQDLMP---KDGQGSSSAYVELDFDGQK-KRTRTKPKDLNPVWNEKLVFNVSDPSRL 61
Query: 426 ---VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL--ETDRVYTHSYPL 473
V+ + V++ D+ G R S +G+VRI ++ ++ V YPL
Sbjct: 62 SNLVLEVYVYN-------DRRSGRRRSFLGRVRISGTSFVPPSEAVVQR-YPL 106
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-10
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 20/116 (17%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEV------YVKAQLGNQALRTRVSASRTINPMWNEDLMFV 255
LR++VIEAQDL DK V YV ++G Q +++V +NP WNE ++
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKE-NLNPKWNE--VYE 59
Query: 256 AAEPFEEHLILTVE----DRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLE 307
A L +E D P+KD+ LG+ I L V+K K W LE
Sbjct: 60 AVVDEVPGQELEIELFDED---PDKDDFLGRLSIDLGSVEK----KGFIDEWLPLE 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-10
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 22/127 (17%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT--------NPEWNQVFA 90
L V V+KA++LP K DPY +++G KKT +PEW++
Sbjct: 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIG-------GVTKKTKTDFRGGQHPEWDEELR 54
Query: 91 FSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK 150
F + +L+V V D D K D +G DL+ K D WY L KG +
Sbjct: 55 FEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFD-----DWYEL-TLKG-R 107
Query: 151 VRGELML 157
GE+ L
Sbjct: 108 YAGEVYL 114
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-10
Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 38/133 (28%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPY------VEVKMGNYKGTTRHFEKKT------------ 81
L V V++AK L KDV G DPY + N + + + +
Sbjct: 30 LKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKS 89
Query: 82 -----------NPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRV 130
NP WN+ F F + + + L + + D D DDF+G V L ++P
Sbjct: 90 IKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLP--- 143
Query: 131 PPDSPLAPQWYRL 143
S W++L
Sbjct: 144 ---SCGLDSWFKL 153
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-10
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 21/122 (17%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-------NPEWNQVFAFS 92
+ V ++KA++L D+ G+ DPY VK+ R +KKT NP +N+ F F+
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPY--VKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74
Query: 93 --KDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVP--------PDSPLAPQWY 141
+R++ + L +TV DKD + ++D +G++ + P P+A QW+
Sbjct: 75 IPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVA-QWH 133
Query: 142 RL 143
RL
Sbjct: 134 RL 135
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-10
Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
+L+V VI A L D G + + +L N L+T + +T+NP WN+ F +
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTH-TIYKTLNPEWNKIFTF-PIKDI 59
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDT 320
+ L +TV D K E LGK IPL L K +WY L KD
Sbjct: 60 HDVLEVTVYDEDKDKKPEFLGKVAIPL------LSIKNGERKWYAL-----------KDK 102
Query: 321 KFASRIHMRICLE 333
K +R I LE
Sbjct: 103 KLRTRAKGSILLE 115
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 8e-10
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNE--DLMFVAAEP 259
+ + ++E ++L P D + YVK +LGN+ +++V S+T+NP W E DL
Sbjct: 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKV-CSKTLNPQWLEQFDLHL----- 55
Query: 260 FEEH---LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEK 308
F++ L + V D+ KDE +G+C I L L + ++ LE
Sbjct: 56 FDDQSQILEIEVWDKDTGKKDEFIGRCEIDLS----ALPREQTHSLELELED 103
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-09
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 42 VRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVL 101
V V A+ L +D G DPYV +K + + +PE++ F + + +S +
Sbjct: 7 VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIK 66
Query: 102 EVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAV 159
+ V + + + D+F+G+ + + PL + +V G + + V
Sbjct: 67 -IQVWNSNLLCDEFLGQATLSADPNDSQTLRTLPLRKR----GRDAAGEVPGTISVKV 119
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-09
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 31 YDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKM----GNYKGTTRHFEKKTNPEW 85
YDL E+ L V ++KA++LPP+ CDP+V+V + ++ K NP +
Sbjct: 9 YDLEEE--QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSL-QSKVKRKTQNPNF 65
Query: 86 NQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNE 125
++ F F S +Q L ++V D D F + +G VLF L +
Sbjct: 66 DETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKD 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-09
Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 21/138 (15%)
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWV--RTRTIIDSPTPKWNEQ-YT 417
IGVL + I +A+GL GT D Y + RT+ D+ P WNE Y
Sbjct: 1 IGVLAVTIKSARGLKGSDIIG--GTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKY- 57
Query: 418 WEVFDPCTVITIGVF-DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTH-SYPLLV 475
I + + +L D +D IG LS+L + + + LL
Sbjct: 58 ---------ILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLL- 107
Query: 476 LYPNGVKKMGEIHLAVRF 493
K +GE++ +RF
Sbjct: 108 ---RNGKPVGELNYDLRF 122
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-09
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-------NPEWNQVFAFS 92
L V V+KA+ LP DV+G DPYV+V + Y G R +KKT NP +N+ F F
Sbjct: 17 LTVVVLKARHLPKMDVSGLADPYVKVNL--YYGKKRISKKKTHVKKCTLNPVFNESFVFD 74
Query: 93 --KDRIQSSVLEVTVKDKDFV-KDDFMGRVL 120
+ ++ +E V D D V K++ +GR++
Sbjct: 75 IPSEELEDISVEFLVLDSDRVTKNEVIGRLV 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-09
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 39 YLY-VRVVKAKDLPPKDVTGSCDPYVEVKMGNYK---GTTRHFEKKTNPEWNQVFAFSKD 94
+L+ +R+V+A++L G DPYV + N K TR NP W++ F
Sbjct: 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60
Query: 95 RIQSSVLEVTVKDKDFVKD-DFMGRVLFDLNEIPKR 129
+ + TV D+ FV D GR L+ PKR
Sbjct: 61 AGEPLWISATVWDRSFVGKHDLCGRASLKLD--PKR 94
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-09
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 23/132 (17%)
Query: 42 VRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAF-----SKDRI 96
V V++A+ L K +G+ D YV +++G K +T EK T+P W + +F
Sbjct: 3 VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62
Query: 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEI------PKRVPPDSPLAPQWYRLEDRKG- 148
+ L++TV ++ + D F+G+V LN++ + +W++LE + G
Sbjct: 63 NRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRT---------RWFKLESKPGK 113
Query: 149 -DKVRGELMLAV 159
DK RGE+ + +
Sbjct: 114 DDKERGEIEVDI 125
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-09
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
Query: 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEV-------KMGNYKGTTRHFEKKT-NPEW 85
Q + L V +++ +L D G DP+V++ K +K + KKT NPE+
Sbjct: 9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVK---KKTLNPEF 65
Query: 86 NQVFAF--SKDRIQSSVLEVTVKDKDFVK-DDFMGRVLFDLN 124
N+ F + + LE+TV DKD K +D++G + +N
Sbjct: 66 NEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGIN 107
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 8e-09
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKT-NPEWNQVFAFSKDR 95
L V V+ A++LP D G DP+V+ + +K T KKT NP WN+ F
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKT---IKKTLNPVWNESFEVPVPS 57
Query: 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEI 126
+VL+V V D D KDD +G DL+++
Sbjct: 58 RVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDL 89
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRH--FEKKT-NPEWNQVFAF-- 91
M L V++++A++L P+D +G+ DPY +V++ + T+ KKT NPE+++ F F
Sbjct: 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEV 74
Query: 92 SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEI 126
+ LEV + D D F +D+ +G V L E+
Sbjct: 75 PPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-08
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-------NPEWNQVFAF- 91
L V +++AK+L DV G DPY VK+ + R +KKT NP +N+ F+F
Sbjct: 17 LTVVILEAKNLKKMDVGGLSDPY--VKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74
Query: 92 -SKDRIQSSVLEVTVKDKDFV-KDDFMGRVL 120
++IQ L VTV D D + K+D +G+V+
Sbjct: 75 VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVV 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 202 LRVNVIEAQDLQPTD-KGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
L+V V+ +L D P YV LGNQ ++TRV + +NP+WNE+L P
Sbjct: 4 LKVRVVRGTNLAVRDFTSSDP--YVVLTLGNQKVKTRV-IKKNLNPVWNEELTLSVPNP- 59
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQ 288
L L V D+ +KD+ +G+ I L+
Sbjct: 60 MAPLKLEVFDKDTFSKDDSMGEAEIDLE 87
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-08
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFS----- 92
YL V V++A+DL P D + +V+ ++GN TR + + NP WN+ F
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 93 KDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145
+D + SV + +KD +GR + LN+I +RV D P+ +W+ LE
Sbjct: 61 EDHLILSVEDRVGPNKDEP----LGRAVIPLNDIERRV-DDRPVPSRWFSLER 108
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-08
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 384 GTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKA 443
++D Y V G + V+TR I + P WNE+ T V +P + + VFD D
Sbjct: 20 TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSM 79
Query: 444 GGA 446
G A
Sbjct: 80 GEA 82
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 8e-08
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 380 KDGRGTTDAYCVAKYGQKWV-RTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438
+D GT+D Y KYG K V +++TI + P W+E++T + D + I VFD
Sbjct: 15 RDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDY---- 70
Query: 439 GGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494
D+ G D +G + LSTLE ++ L PN + +G I L V T
Sbjct: 71 --DR--GLTDDFMGSAFVDLSTLELNKPTEVKLKL--EDPNSDEDLGYISLVVTLT 120
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
YL V V++A+ L P + + V+ +LGN T+ + RT NP WN+ F
Sbjct: 1 YLYVRVVKARGL-PANSN---DPVVEVKLGNYKGSTK-AIERTSNPEWNQVFAFSKDRLQ 55
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRL--DHKPVNTRWYNLE 307
L ++V D+ KD+ LG L V R+ D P+ +WY LE
Sbjct: 56 GSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPD-SPLAPQWYRLE 102
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-07
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 203 RVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMF----VAAE 258
+V V++A+ L K + YV QLG + T V +T +P+W E+ F + +
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSV-KEKTTSPVWKEECSFELPGLLSG 60
Query: 259 PFEEH-LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKK 317
L LTV R D+ LG+ IPL +D+ + TRW+ L E +
Sbjct: 61 NGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRR--RTRWFKL------ESKPG 112
Query: 318 KDTKFASRIHMRI 330
KD K I + I
Sbjct: 113 KDDKERGEIEVDI 125
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-07
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 371 AQGLMPMKTKDGRGTTDAYCVAKYG-QKWVRTRTIIDSPTPKWNEQYTWEVF-DPCTVIT 428
+ L PM D G +D Y + G +K+ +++ + P+W EQ+ +F D ++
Sbjct: 9 GKNLPPM---DDNGLSDPYVKFRLGNEKY-KSKVCSKTLNPQWLEQFDLHLFDDQSQILE 64
Query: 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473
I V+ DK G +D IG+ I LS L ++ ++ L
Sbjct: 65 IEVW--------DKDTGKKDEFIGRCEIDLSALPREQTHSLELEL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L V ++E +DL+P + + Y + +G+Q +T+V S T+NP WN + F + +
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKV-VSDTLNPKWNSSMQFFVKDLEQ 75
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPL 287
+ L +TV DR + D+ LG+ I +
Sbjct: 76 DVLCITVFDRDFFSPDDFLGRTEIRV 101
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 209 AQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTV 268
A++L + P YV+ +G +++V RT NP+W E F+ P + L + V
Sbjct: 9 AKNLPLAKSTKEPSPYVELTVGKTTQKSKV-KERTNNPVWEEGFTFLVRNPENQELEIEV 67
Query: 269 EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT--RWYNLEK 308
+D + LG +PL L +P T + + L+
Sbjct: 68 KDD---KTGKSLGSLTLPL----SELLKEPDLTLDQPFPLDN 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEV-----KMGNYKGTTRHFEKKTNPEWNQVFAFSKD 94
L+V V +AK+LP G+ D +V+ K K T +K NP WN F +
Sbjct: 29 LHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGV 88
Query: 95 R---IQSSVLEVTVKDKD-FVKDDFMG 117
+ + LE+TV D D +DF+G
Sbjct: 89 SPEDLSQACLELTVWDHDKLSSNDFLG 115
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN--YKGTTRHFEKKTNPEWNQVFAFSKDRIQ 97
L V ++ AK L D G DPYV ++ K NPEWN+ F F+ +
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAK-GDGRNPEWNEKFKFTVEYPG 61
Query: 98 SSV---LEVTVKDKD-FVKDDFMGRVLFDLNEI 126
L + + DKD F DDF+G L +
Sbjct: 62 WGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 40 LYVRVVKAKDLPPKDV-TGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVFAF---S 92
L V +++ +DLP D +G+ DPYV++++ +K TR K NP +++ F F
Sbjct: 18 LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIP 77
Query: 93 KDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIP 127
+++Q L V D + +DD +G V+ L
Sbjct: 78 YNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGAD 113
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 3e-07
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)
Query: 42 VRVVKAKDLPPKDVTGSC--DPYVEVKM-GNYKGTTR-HFEKKTNPEWNQVFAFSKD--- 94
+ ++ A+DL K+V Y V + ++K +T + TNP WN+ F D
Sbjct: 4 ITIISAEDL--KNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERL 61
Query: 95 -RIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVR 152
+ L + V + + D +G V L ++ P L Y+L G K +
Sbjct: 62 LQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG-KPQ 120
Query: 153 G 153
G
Sbjct: 121 G 121
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L V V++AQDL P D YV+ Q RTR + +NP+WNE L+F ++P
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTK-PKDLNPVWNEKLVFNVSDP-S 59
Query: 262 EHLILTVE-----DRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEK 308
L +E DR + + LG+ I + + Y LEK
Sbjct: 60 RLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSF---VPPSEAVVQRYPLEK 108
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 26/108 (24%)
Query: 40 LYVRVVKAKDLPP--------------KDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEW 85
++ +A+DLP + DPYVEV K T + NPEW
Sbjct: 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEW 61
Query: 86 NQVFAFSK------DRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEI 126
N+ F + +RI+ + ++D D V DD +G DL++I
Sbjct: 62 NEQIVFPEMFPPLCERIK-----IQIRDWDRVGNDDVIGTHFIDLSKI 104
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-07
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 202 LRVNVIEAQDLQPTDKGRF--PEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEP 259
LRV+V+EA+DL D+ + Y +G Q +T+ T+NP WN F
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQT-IPNTLNPKWNYWCEFPIFSA 61
Query: 260 FEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHK-PVNTRWYNLE-----KHIVVE 313
+ L L + D+ + LG+ I L+ + D K + +W L+ K VV
Sbjct: 62 QNQLLKLILWDKDRFAGKDYLGEFDIALE--EVFADGKTGQSDKWITLKSTRPGKTSVVS 119
Query: 314 GEK 316
GE
Sbjct: 120 GEI 122
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-07
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
GVL + ++ A+ L K + G+G +D Y + G + +T+TI ++ PKWN + +F
Sbjct: 1 GVLRVHVVEAKDLAA-KDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIF 59
Query: 422 DP-CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYT-HSYPLLVLYPN 479
++ + ++D G D G + + +V T ++D+ T S
Sbjct: 60 SAQNQLLKLILWDKDRFAGKDYLGEFDIA-LEEVFADGKTGQSDKWITLKS----TRPGK 114
Query: 480 GVKKMGEIHLAVRFT 494
GEIHL +F+
Sbjct: 115 TSVVSGEIHL--QFS 127
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 29/137 (21%)
Query: 362 GVLELGILNAQGLMPMKTKD------GRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQ 415
GVL + ++ AQ L+ KD +G +D Y + + G + +++ I ++ PKWNE
Sbjct: 1 GVLRIHVIEAQDLV---AKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEV 57
Query: 416 YTWEVF---DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472
Y E P + I +FD +D +G++ I L ++E P
Sbjct: 58 Y--EAVVDEVPGQELEIELFDE---------DPDKDDFLGRLSIDLGSVEKKGFIDEWLP 106
Query: 473 LLVLYPNGVKKMGEIHL 489
L VK G +HL
Sbjct: 107 L-----EDVKS-GRLHL 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 32 DLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG-TTRHFEKKTNPEWNQVFA 90
++VE YL + + ++LP D G DP+V++ + T+ +K NP WN+ F
Sbjct: 1034 EMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFT 1093
Query: 91 FSKDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVP 131
VL + V D D K+D +G DL+++
Sbjct: 1094 IEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT 1135
|
Length = 1227 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQALRTRVSA--SRTINPMWNEDLMFVAA 257
L V ++EA++L+ D G + YVK L + L+ + + RT+NP +NE F
Sbjct: 17 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEV- 75
Query: 258 EPFEE----HLILTVEDRVAPNKDEVLGKCMI 285
PFE+ HLI+TV D K++ +GK ++
Sbjct: 76 -PFEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL-GNQALRTRVSASRTINPMWNEDLMFV--AAE 258
L + +I A+DL+ + +VY + + T V NP WNE L F
Sbjct: 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERL 61
Query: 259 PFEEHLILTVE--DRVAPNKDEVLGKCMIPLQYV 290
+ L LT+E D+++G+ +PL+ +
Sbjct: 62 LQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDL 95
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 29/129 (22%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYKGTTRHFE--KKTN-PEWNQVFAF--- 91
L VRV++ DL K+ G+CDPY V + N K T+ + KKTN P++++ F F
Sbjct: 2 LSVRVIECSDLALKN--GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVT 59
Query: 92 ---SKDRIQS-------SVLEVTVK---DKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAP 138
S ++ Q LE+ V D F+G V IP R +
Sbjct: 60 IDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEV-----RIPLRGLDLQAGSH 114
Query: 139 Q-WYRLEDR 146
Q WY L+ R
Sbjct: 115 QAWYFLQPR 123
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 40 LYVRVVKAKDLPPKDVT-GSCDPYVEV-----KMGNYKGTTRHFEKKTNPEWNQVFAF-- 91
L V + + ++L D +PYV+V K K T + TNP +N+ +
Sbjct: 16 LEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHI 75
Query: 92 SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143
SK ++++ L+++V D F ++ F+G V L+ DS +WY L
Sbjct: 76 SKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDL----DSQ-QSEWYPL 123
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 40 LYVRVVKAKDLPPKD-VTGSCDPYVEV---KMGNYKGTTRHFEKKTNPEWNQ--VFAFSK 93
L V + +A DLP D TGS DPYV K G +TR K NP W + +
Sbjct: 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTP 62
Query: 94 DRIQSSV-LEVTVKDKD-FVKDDFMGRVLFDLNEI 126
D +++ L + D D F DD +GRV DL E+
Sbjct: 63 DEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKEL 97
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 25/119 (21%)
Query: 40 LYVRVVKAKDLPPKDVTGSC-DPYVEVKMGNY---------KGTTRHFEKKTNPEWNQVF 89
L+V V+ AK+LP D GS DPYV+ Y K T+ K NP +N++
Sbjct: 15 LFVMVMHAKNLPLLD--GSDPDPYVKT----YLLPDPQKTTKRKTKVVRKTRNPTFNEML 68
Query: 90 A---FSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144
+ +Q VL+V+V D V+++F+G V L ++ + +WY L
Sbjct: 69 VYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETE-----KWYPLG 122
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
LR +V+EA+DL P D+ + +V+ Q L T V ++ P WNE F E +
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSV-VKKSCYPRWNEVFEFELMEGAD 60
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306
L + V D +K++ LGK + +Q L W+ L
Sbjct: 61 SPLSVEVWDWDLVSKNDFLGKVVFSIQ----TLQQAKQEEGWFRL 101
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-06
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAF--SKDRIQ 97
L+V + AK+LP T PYVE+ +G ++ E+ NP W + F F Q
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQ 61
Query: 98 SSVLEVTVKDKD 109
LE+ VKD
Sbjct: 62 E--LEIEVKDDK 71
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRIQS 98
LY+R+V+ K+LP KD+TGS DPY VK+ N T K NP W + +
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFH 61
Query: 99 SVLEVTVKDKDFV-KDDFMGRV 119
+V V D+D + +DD +G+V
Sbjct: 62 TV-SFYVLDEDTLSRDDVIGKV 82
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWV-RTRTIIDSPTPKWNEQYTWEVFD 422
L L IL A+ L +GT D YC Q V RT+T+ P W E++ ++
Sbjct: 2 LRLRILEAKNLPS------KGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDP- 53
Query: 423 PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK 482
P V F + DK RD IGKV LS L+ + +PL + P+
Sbjct: 54 PPDV----TFFTLSFYNKDKRSKDRDIVIGKV--ALSKLDLGQGKDEWFPLTPVDPDSE- 106
Query: 483 KMGEIHLAVRF 493
G + L R+
Sbjct: 107 VQGSVRLRARY 117
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-06
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 644 DTRLSHADSA-HPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQ 698
D SH A PD L + ++ D V L S+ +G+L
Sbjct: 71 DNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMF------- 254
+ + V+ AQ L DK + YV Q+G RT+ + + +NP+WNE F
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTK-TIPQNLNPVWNEKFHFECHNSSD 61
Query: 255 ---VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEK 308
V ++ + ++ + D+ LG+ +I ++ + +D WYNLEK
Sbjct: 62 RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMD------VWYNLEK 112
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-06
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L V +I A+ LQ TD + YV Q Q +++V+ NP WNE F P
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGW 62
Query: 262 E---HLILTVEDRVAPNKDEVLGKCMIPLQ 288
LIL + D+ + D+ +G+ I L+
Sbjct: 63 GGDTKLILRIMDKDNFSDDDFIGEATIHLK 92
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-06
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 48 KDLPPKD-VTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVF-AFSKDRIQSSVLEVT 104
K L + TG PY E+ + TTR +K NP WN DR + S + V
Sbjct: 1 KGLDTSESKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVV 59
Query: 105 VKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVW 160
VKD D +G V LN++ + + QW+ L ++R + A+W
Sbjct: 60 VKDDRDRHDPVLGSVSISLNDLIDA----TSVGQQWFPLSGNGQGRIR---ISALW 108
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 6e-06
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 200 WYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMF----- 254
+ LR + +A+DL DK + + + NQ+ T V T++P W++ L+F
Sbjct: 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIFDEVEL 59
Query: 255 ------VAAEPFEEHLILTVEDRVAPNKDEVLGKCMI-PLQYVDKRLDHKPVNTRWYNLE 307
+A P +++ + D+ + KDE LG+ + PL +D D P +W+ +
Sbjct: 60 YGSPEEIAQNP--PLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPK-LQWFPIY 116
Query: 308 KHIVVEGE 315
K GE
Sbjct: 117 KGGQSAGE 124
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 6e-06
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL-GNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
L V+VI A++L D+ + +VK L G + +T+ +T+NP+WNE
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKT-IKKTLNPVWNESFEVPVPSRV 59
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVD 291
L + V D KD++LG I L ++
Sbjct: 60 RAVLKVEVYDWDRGGKDDLLGSAYIDLSDLE 90
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-06
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 15/118 (12%)
Query: 50 LPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTV---- 105
L KD GS D Y K G TR E +NP WN+ + + +VL V V
Sbjct: 15 LRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNS 73
Query: 106 ---KDKDFVKDDFMGRVLFDLN--EIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLA 158
+ D +G+V L+ E + PL + G K GEL A
Sbjct: 74 QSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPL-----LSLNPSGVKKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-06
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 20/115 (17%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQA---LRTRVSASRTINPMWNEDLMFVA 256
L +I A+ L+ D + YVK L G LRT+ + +T NP +NE L +
Sbjct: 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTK-TVHKTRNPEFNETLTYYG 75
Query: 257 AEPFE---EHLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306
+ + L L V EDR ++ LG+ IPL K+L KP T+ +N+
Sbjct: 76 ITEEDIQRKTLRLLVLDEDRF---GNDFLGETRIPL----KKL--KPNQTKQFNI 121
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
G L++ ++ A GL D G +D +CV + ++T TI + P+WN+ +T+ +
Sbjct: 1 GFLQVKVIRASGLA---AADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIK 57
Query: 422 DPCTVITIGVFD 433
D V+ + V+D
Sbjct: 58 DIHDVLEVTVYD 69
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-05
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 203 RVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSA-SRTINPMWNEDLMFVAAEPFE 261
RV V+ A++LQP D + Y+K +LG + + R + T+NP++ + A P
Sbjct: 3 RVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGN 62
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPL 287
L ++V D D+++G+ +I L
Sbjct: 63 SILKISVMDYDLLGSDDLIGETVIDL 88
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP 423
+ + ++ AQGL+ KD GT+D Y + G+ RT+TI + P WNE++ +E +
Sbjct: 3 ISITVVCAQGLI---AKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS 59
Query: 424 CTVITIGVFD 433
I + V+D
Sbjct: 60 SDRIKVRVWD 69
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWV-RTRTIIDSPTPKWNEQYTWEVF 421
L++ I A+ L P D YC Q+ V RT+T+ S P + E + +E+
Sbjct: 1 SLKIKIGEAKNLPP--RSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP 58
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
++ ++D D RDS IGKV I+ L +PL + +
Sbjct: 59 RTFRHLSFYIYDR------DVLR--RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADS- 109
Query: 482 KKMGEIHLAVRF 493
+ G++HL +R
Sbjct: 110 EVQGKVHLELRL 121
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 21/128 (16%)
Query: 204 VNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTI----NPMWNEDLMFVAAEP 259
+ ++ A++L+ + YV L + + R++ +RTI NP W+E+ F P
Sbjct: 5 IRIVRAENLKADSSNGLSDPYV--TLVDTNGKRRIAKTRTIYDTLNPRWDEE--FELEVP 60
Query: 260 FEEHLIL--TVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTR--WYNLEK------H 309
E L + TV DR K ++ G+ + L D + R W +L+
Sbjct: 61 AGEPLWISATVWDRSFVGKHDLCGRASLKL---DPKRFGDDGLPREIWLDLDTQGRLLLR 117
Query: 310 IVVEGEKK 317
+ +EGE+
Sbjct: 118 VSMEGERD 125
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 191 SKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALR-----TRVSASRTIN 245
S YL P L + +I+A++L+ D F + YVK L + R T V + T+N
Sbjct: 6 SLCYL-PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN-TLN 63
Query: 246 PMWNEDLMF-VAAEPFEE-HLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDH----- 296
P +NE L+F V E + LI+ V DRV N E++G C + + +H
Sbjct: 64 PTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHN--ELIGVCRVGPNADGQGREHWNEML 121
Query: 297 ----KPVNTRWYNL 306
KP+ +W+ L
Sbjct: 122 ANPRKPI-AQWHQL 134
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 4e-05
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 40 LYVRVVKAKDLP-PKDVTGS-CDPYVEVKM------GNYKGTTRHFEKKT-NPEWNQVFA 90
L ++++ + LP PK GS DPYVEV++ + K T+ + NP WN+ F
Sbjct: 4 LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63
Query: 91 FSKDRIQSSVLEVTVKDKDFVKDDFMG 117
F + + L V D+D DDF+G
Sbjct: 64 FDVTVPELAFLRFVVYDEDSGDDDFLG 90
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-05
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 42 VRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAF----SKDRIQ 97
VRV++A+ L G+ DP V+V++G K T + P +N+ F F S D +
Sbjct: 8 VRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELF 63
Query: 98 SSVLEVTVKDKD-FVKDDFMGRVLFDL 123
+++++V D D +G D+
Sbjct: 64 DKIIKISVYDSRSLRSDTLIGSFKLDV 90
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 9e-05
Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 28/145 (19%)
Query: 201 YLRVNVIEAQDLQPTDKGR-----FPEV-----YVKAQLGNQALRTRVSASRTINPMWNE 250
L++ + EA DL+PTD YV + + + + +T +P+WNE
Sbjct: 5 TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNE 64
Query: 251 DLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHI 310
+ F +L LTV A D+ + C I + + +R W +LE
Sbjct: 65 E--FTTEVHNGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGS--FDLWVDLEPQ- 119
Query: 311 VVEGEKKKDTKFASRIHMRICLEGG 335
++H++I L+G
Sbjct: 120 -------------GKLHVKIELKGS 131
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L +++ E ++L D+G + YVK + G + + + + +NP+W+E + E
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFT-LPIEDVT 60
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPL 287
+ L + V D D+ +G + L
Sbjct: 61 QPLYIKVFDYDRGLTDDFMGSAFVDL 86
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 19/131 (14%)
Query: 368 ILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVI 427
+ +A+GL +D G D Y + K + VR+ D+ +P+++ Q + P + I
Sbjct: 9 VHSAEGL---SKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPI 65
Query: 428 TIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEI 487
I V+++ L D +G+ LS D + P L G GE+
Sbjct: 66 KIQVWNSNLL---------CDEFLGQA--TLSADPNDSQTLRTLP---LRKRGRDAAGEV 111
Query: 488 --HLAVRFTCS 496
++V+ T S
Sbjct: 112 PGTISVKVTSS 122
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 202 LRVNVIEAQDLQPTDK-GRFPEVYVKAQLGNQA--LRTRVSASRTINPMWNEDLMFVAAE 258
L V + A+ L+ +D G + YV + N+ RT+V T NP+WNE +
Sbjct: 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKV-KKDTSNPVWNETKYILVNS 62
Query: 259 PFEEHLILTVEDRVAPNKDEVLGKCMIPL 287
E L LTV D KD+++G L
Sbjct: 63 -LTEPLNLTVYDFNDKRKDKLIGTAEFDL 90
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL----GNQALRTRVSASRTINPMWNEDLMFVAA 257
L V +I +L D + + +VK L G ++ +T+NP +NE+ +
Sbjct: 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIK 74
Query: 258 EP--FEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH-----KPVN---TRWYNL 306
++ L +TV D+ ++ +G + + +RL H K + W+ L
Sbjct: 75 HSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDKKIEAWHTL 133
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|219008 pfam06398, Pex24p, Integral peroxisomal membrane peroxin | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 591 ICNWKNP-IT-TVLIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLS 648
I W NP T + L+ FI LV Y L+ + LF I V Y WR H S
Sbjct: 35 ILTWTNPDYTLSFLLVYTFICLVPYLLLVSLPLGPLLFGIMVPGYLWR-----HSPLPRS 89
Query: 649 HADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVV---------GDLATQG 699
S+ + E T + +IV LR + ++ ++ +
Sbjct: 90 SLISSDLNPTPAEGPTLDEAESMEIVLN----LRDLQNKMTLLLSPIDFLEKFLYPFFKD 145
Query: 700 ERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLR-HPRFR 751
E L +LL L + I + L + P++++ L+ G ++L HP +
Sbjct: 146 EDLSTLLF------LTLLLTPIYI-FLTLPLIPWRLILLILGAFLLTYHPSWS 191
|
Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p. Length = 360 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQAL-RTRVSASRTINPMWNEDLMFVAAEPF 260
LR+++ +A DL+ + + YV+ + RT ++ T+NP+W+E +++V
Sbjct: 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISN-TLNPVWDE-VLYVPVTSP 60
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQ-YVDKRLDHKPVNTRWYNLEKHIVVEGEKKKD 319
+ + L V D KD LG I + + K D K V Y+ E+ + K
Sbjct: 61 NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGKYVE---YDDEEERLKRLLSLKG 117
Query: 320 TK 321
K
Sbjct: 118 VK 119
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 40 LYVRVVKAKDL-PPKDVTGSCDPYVEVKMGNYK--GTTRHFEKKTNPEWNQVFAFSKDRI 96
L V + A+ L + G+ DPYV + N + T+ + +NP WN+ +
Sbjct: 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYI----L 59
Query: 97 QSS---VLEVTVKDK-DFVKDDFMGRVLFDLNEI 126
+S L +TV D D KD +G FDL+ +
Sbjct: 60 VNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSL 93
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 19/109 (17%)
Query: 197 PKLWYLRVNVIEAQDLQ-----PTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNED 251
P+ + +RV VIEA+ L P VK ++G Q T V T P +NE
Sbjct: 1 PQDFQVRVRVIEARQLVGGNIDP---------VVKVEVGGQKKYTSVKKG-TNCPFYNEY 50
Query: 252 LMF----VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH 296
F E F++ + ++V D + D ++G + + V + DH
Sbjct: 51 FFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDH 99
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 42 VRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVF 89
+ + KA DL + G DPYV V + KG T NP W++V
Sbjct: 5 LHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVL 53
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAF-SKDRIQS 98
L V V++A L D S D YV+V G + T NP WN F F S +
Sbjct: 30 LTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPG 88
Query: 99 SVLEVTVKDKD-FVKDDFMGR 118
L V D+D DD +G
Sbjct: 89 GKLRFEVWDRDNGWDDDLLGT 109
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQALRTR--VSASRTINPMWNEDLMF-VA 256
+ VN+I+A++L+ D + YVK L ++ + + V RT+NP++NE +F +
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIP 76
Query: 257 AEPFEE-HLILTVEDRVAPNKDEVLGKCMIP 286
E E LI+TV D+ ++++++GK +
Sbjct: 77 LERLRETTLIITVMDKDRLSRNDLIGKIYLG 107
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 44 VVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI--QSSVL 101
VV K+LP G D +V K TR E + NP WN+ F + L
Sbjct: 2 VVSLKNLPGL--KGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESL 59
Query: 102 EVTVKD 107
E+ VKD
Sbjct: 60 EIVVKD 65
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 23/136 (16%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFD 422
L+L +L A L P+K YCV + K RT+ P P W+E++ VFD
Sbjct: 6 LQLNVLEAHKL-PVKH-----VPHPYCVISLNEVKVARTKVREG-PNPVWSEEF---VFD 55
Query: 423 --PCTV--ITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYP 478
P V TI + + KA ++DS I +V ++LS L+ + YPL P
Sbjct: 56 DLPPDVNSFTISLSN--------KAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASP 107
Query: 479 NGVKKMGEIHLAVRFT 494
+ G + + R++
Sbjct: 108 LKGGEWGSLRIRARYS 123
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 31/123 (25%), Positives = 42/123 (34%), Gaps = 23/123 (18%)
Query: 202 LRVNVIEAQDLQPTDKGR---FPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAE 258
L V V+E +DL G F V + RT+V +T NP ++E F
Sbjct: 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVK-KKTNNPRFDEAFYFELTI 59
Query: 259 PFEEHLILT-VEDRVAPN--------------KDEVLGKCMIPLQYVDKRLDHKPVNTRW 303
F VE+ D+ LG+ IPLQ L + W
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQ----GLQQAGSHQAW 115
Query: 304 YNL 306
Y L
Sbjct: 116 YFL 118
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 39/220 (17%), Positives = 73/220 (33%), Gaps = 36/220 (16%)
Query: 40 LYVRVVKAKDLPPKD--VTGSCDPYVEVKM-GNYKGTTRHFEKKTNPEWNQVFAFSKDRI 96
+ V++ A+ L D + G+ DPY+ V G TR + NP WN+ F +
Sbjct: 438 VEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETF-YILLNS 496
Query: 97 QSSVLEVTVKDK-DFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGEL 155
+ L +++ D F D +G DL + + + L E + K G L
Sbjct: 497 FTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELY------EFLRNTKNVGRL 550
Query: 156 MLAVWMGTQADEAFPEAWHSDAAT----VTGIEGLANIRSKVYLSPKLWYLRVNVIEAQD 211
+ + +E L + + + L+V + E +
Sbjct: 551 ------------TYDLRFFPVIEDKKELKGSVEPLEDSNTGI--------LKVTLREVKA 590
Query: 212 LQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNED 251
L + + + + + T +P WN
Sbjct: 591 LD-ELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQ 629
|
Length = 1227 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTW---E 419
L + ++ AQ L+P D + + A+ G + +RTR + P WNE+ + E
Sbjct: 2 LRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAE 58
Query: 420 VFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462
F+ ++++ D+ G +D +G+ I L+ +E
Sbjct: 59 PFEDHLILSVE----------DRVGPNKDEPLGRAVIPLNDIE 91
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176040 cd08394, C2A_Munc13, C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 37 MQYLYVRVVKAK-DLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDR 95
M L V V KAK D P + YV +K+ N K TT + + P W Q F F +R
Sbjct: 1 MSLLCVLVKKAKLDGAP----DKFNTYVTLKVQNVKSTTIAV-RGSQPCWEQDFMFEINR 55
Query: 96 IQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIP 127
+ L + + +K + D +G V L+ I
Sbjct: 56 LDLG-LVIELWNKGLIWDTLVGTVWIPLSTIR 86
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 9e-04
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFS--KDRI 96
L +R+++AK+LP K G+ DPY V + + T+ EK NP W + F F +
Sbjct: 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEKL-NPFWGEEFVFDDPPPDV 57
Query: 97 QSSVLEVTVKDKD-FVKDDFMGRVLFD 122
L KDK +D +G+V
Sbjct: 58 TFFTLSFYNKDKRSKDRDIVIGKVALS 84
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTII--DSPTPKWNEQYTWE 419
G LE+ +++A+GL + D G D Y + + + R + D P+WNE++ +
Sbjct: 1 GTLEVLLISAKGL---QDTDFLGKIDPYVIIQCRTQ-ERKSKVAKGDGRNPEWNEKFKFT 56
Query: 420 VFDP 423
V P
Sbjct: 57 VEYP 60
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 26/146 (17%), Positives = 60/146 (41%), Gaps = 16/146 (10%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
YL + + ++L +D+ + + +VK L +++ +T+NP+WNE+
Sbjct: 1041 YLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRV 1100
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHK---PVNTRW-----------YNL 306
++ L + V D + K+++LG I L ++ P++ + +N
Sbjct: 1101 KDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNF 1160
Query: 307 E-KHIVVEGEK-KKDTKFASRIHMRI 330
K+ + K A ++ +
Sbjct: 1161 RSKYALNVSRKEGILGDIAKKVGTGL 1186
|
Length = 1227 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.001
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 380 KDGRGTTDAYCVAKYGQKWV-RTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438
KD G++D YC+ K + + RT T+ + P W E+YT + ++ V D L
Sbjct: 15 KDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTL- 73
Query: 439 GGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVR 492
+RD IGKV + + + L + GEIHL +
Sbjct: 74 -------SRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 352 TAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPK 411
A+ S IG L + I+ + L P + G +D YC G + +T+ + D+ PK
Sbjct: 5 LARSQRASGIGRLMVVIVEGRDLKPCNSN---GKSDPYCEVSMGSQEHKTKVVSDTLNPK 61
Query: 412 WNEQYTWEVFD-PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR 465
WN + V D V+ I VFD + D +G+ IR++ + +
Sbjct: 62 WNSSMQFFVKDLEQDVLCITVFDRDFF--------SPDDFLGRTEIRVADILKET 108
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.002
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMWNEDLMF-VAA 257
L V +I+A++LQP D + Y K +L + ++++ +T+NP ++E +F V
Sbjct: 18 LNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIH-KKTLNPEFDESFVFEVPP 76
Query: 258 EPFEEHLILTVE----DRVAPNKDEVLGKCMIPLQYVD 291
+ + T+E D ++DE +G +PL VD
Sbjct: 77 QELPKR---TLEVLLYDFDQFSRDECIGVVELPLAEVD 111
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176052 cd08407, C2B_Synaptotagmin-13, C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.002
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 18/108 (16%)
Query: 202 LRVNVIEAQDLQPTDKGRF---PEVYVKAQLGNQALRTRVSASR----TINPMWNEDLMF 254
L V VI+A++L +D+ + +V VK L +Q + + ++ INP+WNE +MF
Sbjct: 17 LLVVVIKAKNLH-SDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMF 75
Query: 255 ------VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH 296
+AA E L V ++ +P + LG+C + L H
Sbjct: 76 ELPSELLAASSVE----LEVLNQDSPGQSLPLGRCSLGLHTSGTERQH 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138 |
| >gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 45 VKAKDLPPKDVTGSCDPYVEVKM--GNYKGTTRHF-----EKKTNPEWNQVFAF-----S 92
+ ++L KDV DP+V V + G + NP++ F
Sbjct: 7 ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66
Query: 93 KDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEI 126
+++ V +V K KD DF+G L EI
Sbjct: 67 VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120 |
| >gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 23/99 (23%)
Query: 60 DPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRI----QSSVLEVTVKDKDFVKDD 114
DPY V + + TR E NP WN+ F I +S +E TVKD D V
Sbjct: 59 DPYATVDLAGARVARTRVIENSENPVWNESF-----HIYCAHYASHVEFTVKDNDVVGAQ 113
Query: 115 FMGRVLFDLNEIPKRVPPDSPLAPQ----WYRLEDRKGD 149
+GR +P + L+ + W + D G
Sbjct: 114 LIGRA---------YIPVEDLLSGEPVEGWLPILDSNGK 143
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 40 LYVRVVKAKDLPP-KDVTGS---CDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFS-KD 94
+++ + DLPP K++T + DP+V + G T NP +N+ AF
Sbjct: 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYP 62
Query: 95 RIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSP 135
++ ++ V DKD F +D++ + E+ P P
Sbjct: 63 HEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAPQPDP 104
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 192 KVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQL-------GNQALRTRVSASRTI 244
K Y LRV ++ A++L P D + +VK +L +T+V +T+
Sbjct: 8 KAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVK-KKTL 66
Query: 245 NPMWNEDLMF-VAAEPFEEH---LILTVEDRVAPNKDEVLGKCMIPLQ 288
P+++E F V E L+ TV+D ++ G+ +PL
Sbjct: 67 FPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLN 114
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.004
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 20/130 (15%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKY-GQKWVRTRTIIDSPTPKWNEQYTWEVFD 422
L + +++A+ L D G +D + G+K +T+TI + P WNE + V
Sbjct: 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPV-- 55
Query: 423 PC---TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPN 479
P V+ + V+D D GG D +G I LS LE + + P L
Sbjct: 56 PSRVRAVLKVEVYD------WD-RGGKDDL-LGSAYIDLSDLEPEETTELTLP---LDGQ 104
Query: 480 GVKKMGEIHL 489
G K+G + L
Sbjct: 105 GGGKLGAVFL 114
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 21/155 (13%)
Query: 344 HYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGR----GTTDAYCVAKYGQKWV 399
+ D+ ++IGV+E+ I +A+GL K GT D Y + + +
Sbjct: 418 SLTIDISQIMAGDSGTAIGVVEVKIKSAEGL-----KKSDSTINGTVDPYITVTFSDRVI 472
Query: 400 -RTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRL 458
+TR ++ P WNE + + + + ++ D D +G ++ L
Sbjct: 473 GKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLY--------DFNSFKSDKVVGSTQLDL 524
Query: 459 STLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493
+ L + V + L + K +G + +RF
Sbjct: 525 ALLHQNPVKKN---ELYEFLRNTKNVGRLTYDLRF 556
|
Length = 1227 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 773 | |||
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 100.0 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.96 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.96 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.94 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.94 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.89 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.89 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.88 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.88 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.88 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.86 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.86 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.85 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.83 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.83 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.82 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.82 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.82 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.81 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.8 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.8 | |
| PF04842 | 683 | DUF639: Plant protein of unknown function (DUF639) | 99.8 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.8 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.8 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.8 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.79 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.79 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 99.79 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.79 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.79 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.79 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.78 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.77 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.77 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.77 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.77 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.77 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.77 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.77 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.77 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.77 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.76 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.76 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.76 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.76 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.76 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.75 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.75 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.75 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.75 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.75 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.75 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.75 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.75 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.74 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.74 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.74 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.74 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.74 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.74 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.74 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.74 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.74 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.74 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.74 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.73 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.73 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.73 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.73 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.73 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.73 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.73 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.73 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.73 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.72 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.72 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.72 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.72 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.72 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.71 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.71 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.71 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.71 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.71 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.71 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.71 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.71 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.71 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.7 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.7 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.7 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.7 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.7 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.7 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.7 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.7 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.7 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.7 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.7 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.69 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.69 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.69 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.69 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.69 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.69 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.68 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.68 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.68 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.68 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.68 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.68 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.68 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.68 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.67 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.67 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.67 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.67 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.67 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.67 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.67 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.67 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.66 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.66 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.66 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.65 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.65 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.65 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.65 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.65 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.65 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.64 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.64 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.64 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.64 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.64 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.64 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.64 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.64 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.64 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.63 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.63 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.63 | |
| PLN03008 | 868 | Phospholipase D delta | 99.63 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.62 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.62 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.62 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.62 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.62 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.61 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.61 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.61 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.61 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.61 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.61 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.61 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.6 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.6 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.6 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.6 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.6 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.59 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.59 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.59 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.59 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.59 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.59 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.58 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.58 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.58 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.58 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.58 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.58 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.58 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.57 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.57 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.57 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.56 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.56 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.56 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.56 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.56 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.55 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.55 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.55 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.55 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.54 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.53 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.53 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.52 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.51 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.51 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.51 | |
| PLN03008 | 868 | Phospholipase D delta | 99.5 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.5 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.5 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.49 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.45 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.41 | |
| PF06398 | 359 | Pex24p: Integral peroxisomal membrane peroxin; Int | 99.4 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.39 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.39 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.38 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.35 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.3 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.29 | |
| PLN02270 | 808 | phospholipase D alpha | 99.29 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.26 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.18 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.17 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.17 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.15 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.13 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.13 | |
| PLN02270 | 808 | phospholipase D alpha | 99.07 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.06 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 99.04 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.02 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.02 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.0 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.96 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.95 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.95 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.91 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.88 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.82 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.81 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.79 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.78 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.76 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.75 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.73 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.71 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.64 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.63 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.59 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.58 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.58 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.56 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.48 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.46 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 98.42 | |
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 98.41 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.31 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 98.11 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.79 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.71 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.66 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.65 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.41 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.26 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.13 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.07 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.03 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.56 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.99 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.95 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.8 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.67 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.33 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.03 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 94.54 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 94.52 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 94.41 | |
| PF02453 | 169 | Reticulon: Reticulon; InterPro: IPR003388 Eukaryot | 94.19 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 94.16 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 93.94 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 93.26 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.17 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 92.59 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 91.65 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 91.61 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 91.48 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 90.98 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 90.97 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 90.57 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 88.4 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 87.61 | |
| PF08151 | 72 | FerI: FerI (NUC094) domain; InterPro: IPR012968 Th | 87.17 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 87.11 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 86.86 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 86.42 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 86.12 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 84.18 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 83.51 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 83.26 | |
| PF11618 | 107 | DUF3250: Protein of unknown function (DUF3250); In | 83.12 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 81.87 | |
| PF11618 | 107 | DUF3250: Protein of unknown function (DUF3250); In | 81.68 |
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=304.75 Aligned_cols=156 Identities=79% Similarity=1.402 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004109 618 LPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLAT 697 (773)
Q Consensus 618 ~p~~~l~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~ 697 (773)
+|+++++++++++|+|+++|+.|+|+|.++|+.+.+++||+|||+|..|++++.+.+++||+++++++++|||.||++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhhccCCccCCCCCCchhhhhhcCCCCccCCC
Q 004109 698 QGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773 (773)
Q Consensus 698 ~~e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~~~P~~r~~~~~~~~~~~~r~ps~~~~~~ 773 (773)
++||++|+++|+||.+|.+++++|+++++++|++|+|+++++||+|++|||++|.++|+.+.|||+||||++|+||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=265.45 Aligned_cols=400 Identities=19% Similarity=0.228 Sum_probs=298.2
Q ss_pred ccCceeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCC
Q 004109 33 LVEQMQYLYVRVVKAKDLPPKD--VTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKD 109 (773)
Q Consensus 33 ~~~~~~~L~V~v~~a~~L~~~d--~~~~~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~ 109 (773)
.....|+|.|+|.+|++|...+ ..+..|||+.+.+.+ ...+|++.+++.||+|||+|++.+... ++.|.++|||.+
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n 509 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFN 509 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecc
Confidence 4578899999999999999888 578999999999887 567999999999999999999999864 688999999988
Q ss_pred CC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEeccCCCCCCcccccccccccccccccc
Q 004109 110 FV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLAN 188 (773)
Q Consensus 110 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 188 (773)
.+ +|+.+|++.++|..|..+... ..+-+.+.. +.+..|+|...+.|.+......... .+. |..
T Consensus 510 ~~~sd~vvG~~~l~L~~L~~~~~~----~ne~~e~~~--~~k~vGrL~yDl~ffp~~e~k~~~~-~s~-------e~~-- 573 (1227)
T COG5038 510 SFKSDKVVGSTQLDLALLHQNPVK----KNELYEFLR--NTKNVGRLTYDLRFFPVIEDKKELK-GSV-------EPL-- 573 (1227)
T ss_pred ccCCcceeeeEEechHHhhhcccc----ccceeeeec--cCccceEEEEeeeeecccCCccccc-ccc-------CCc--
Confidence 88 999999999999999876432 223344332 4456899999998876433211100 000 000
Q ss_pred cccceeccCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEEeecccCCCCCccccceEEEEeeCCCCCeEEEE
Q 004109 189 IRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQ-ALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILT 267 (773)
Q Consensus 189 ~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~ 267 (773)
.+...|.+.+++.++++|..... ....-++.+++..+ .+.|+.++. +.+|.||+++.-.+.+.....+.+.
T Consensus 574 ------ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~-t~~~~wn~~~~~~v~~~~ns~~~~~ 645 (1227)
T COG5038 574 ------EDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKF-TNHPSWNLQYNVLVTDRKNSSIKVV 645 (1227)
T ss_pred ------ccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeee-ccCCceeeecceEeccCcceeEEEE
Confidence 01225789999999999975432 22233488888875 455577765 9999999999999988888889999
Q ss_pred EEEccCCCCCceeEEEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccCcccCCCCCccCC
Q 004109 268 VEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSS 347 (773)
Q Consensus 268 V~d~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~ 347 (773)
++|.. ..+.||+...+|.++... ......||++..+ .|+|.+..+..+.|...+
T Consensus 646 ~~d~~---~g~~i~~~~~~l~~li~~---t~dt~~~f~~~~~-------------kg~I~~t~~W~Pi~~~~~------- 699 (1227)
T COG5038 646 TFDVQ---SGKVIATEGSTLPDLIDR---TLDTFLVFPLRNP-------------KGRIFITNYWKPIYNAGG------- 699 (1227)
T ss_pred ecccc---cCceeccccccchHhhhc---cccceEEEEcCCC-------------cceEEEEeccceeecccc-------
Confidence 98864 456888888888887643 4456789999876 688888876544332110
Q ss_pred CCCccccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCCCce
Q 004109 348 DLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTV 426 (773)
Q Consensus 348 ~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~ 426 (773)
.+....+..++|.++|.|..|.+|... ...+.+|||+++.+++. ++||.....++||.||+....+|..+.+.
T Consensus 700 ---~~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r 773 (1227)
T COG5038 700 ---SSSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQR 773 (1227)
T ss_pred ---ccceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccE
Confidence 011222357889999999999999854 56788999999999875 58999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCcccc----CCeEEe---eEEeEeecCCCcccccEEEEEEEEeecc
Q 004109 427 ITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET----DRVYTH---SYPLLVLYPNGVKKMGEIHLAVRFTCSS 497 (773)
Q Consensus 427 l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~----~~~~~~---~~~L~~~~~~g~~~~G~v~l~~~~~~~~ 497 (773)
+.++++|....+ .|..||.+.|+++++.. +..+.. --+.......|.+..|++.+.++|-|..
T Consensus 774 ~~l~~~~~~~sg--------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~ 843 (1227)
T COG5038 774 LTLECMDYEESG--------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAV 843 (1227)
T ss_pred Eeeeeecchhcc--------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeec
Confidence 999999998876 79999999999999865 221111 0011111112334468888888886654
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-28 Score=260.31 Aligned_cols=226 Identities=32% Similarity=0.514 Sum_probs=190.5
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEe--cCC
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSK--DRI 96 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v--~~~ 96 (773)
.|...++..|++ +...|.|+|++|++|+..+..|.+||||++++.. .+.+|++.++++||+|||+|.|.+ .++
T Consensus 153 ~G~l~fsl~Yd~--~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l 230 (421)
T KOG1028|consen 153 VGNLQFSLQYDF--ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL 230 (421)
T ss_pred eeeEEEEEEecc--cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence 445566666664 5569999999999999999778899999999986 468999999999999999999997 346
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC--CceeeEEEEEEEEeccCCCCCCccc
Q 004109 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAVWMGTQADEAFPEAW 173 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~~~~~~~d~~~~~~~ 173 (773)
....|.+.|||.|++ +++++|++.++|..+..... ...|.+|..... ....|+|.+++.|.+.
T Consensus 231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~--------- 296 (421)
T KOG1028|consen 231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLCYLPT--------- 296 (421)
T ss_pred ccCEEEEEEEecCCcccccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEEeecC---------
Confidence 788999999999999 99999999999998886532 567999988641 1223899999988752
Q ss_pred ccccccccccccccccccceeccCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeecccCCCCCccc
Q 004109 174 HSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTRVSASRTINPMW 248 (773)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~w 248 (773)
.|.|+|.|++|++|..++.++.+||||++.+-. .+.+|.+.++ +.||+|
T Consensus 297 -------------------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~ 350 (421)
T KOG1028|consen 297 -------------------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVF 350 (421)
T ss_pred -------------------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcc
Confidence 357999999999999999999999999999952 4567777766 999999
Q ss_pred cceEEEEeeCC--CCCeEEEEEEEccCCCCCceeEEEEEeccc
Q 004109 249 NEDLMFVAAEP--FEEHLILTVEDRVAPNKDEVLGKCMIPLQY 289 (773)
Q Consensus 249 ne~f~f~~~~~--~~~~l~i~V~d~~~~~~d~~iG~~~i~L~~ 289 (773)
||+|.|.+... .+..+.|+|||++..+.+++||.|.+....
T Consensus 351 nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 351 NETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred cccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 99999988643 344799999999999999999999888774
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=241.37 Aligned_cols=216 Identities=26% Similarity=0.408 Sum_probs=179.2
Q ss_pred ceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEEeecccCCCCCccccceEEEEeeC--CCCCeEEEEEEEcc
Q 004109 198 KLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN---QALRTRVSASRTINPMWNEDLMFVAAE--PFEEHLILTVEDRV 272 (773)
Q Consensus 198 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~--~~~~~l~i~V~d~~ 272 (773)
+...|.|+|++|++|+.++..|.+||||++++.. .+.+|++.++ ++||.|||+|.|.+.. .....|.++|||+|
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 3447999999999999999777899999999974 5789999876 9999999999999643 34668999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccCcccCCCCCccCCCCCcc
Q 004109 273 APNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPT 352 (773)
Q Consensus 273 ~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~ 352 (773)
.++++++||++.++|..+... .....|.++........ ...|+|.++++.
T Consensus 244 rfsr~~~iGev~~~l~~~~~~----~~~~~w~~l~~~~~~~~------~~~gel~~sL~Y-------------------- 293 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLL----STTLFWKDLQPSSTDSE------ELAGELLLSLCY-------------------- 293 (421)
T ss_pred CcccccEEEEEEecCcccccc----ccceeeeccccccCCcc------cccceEEEEEEe--------------------
Confidence 999999999999998877532 22567999988632221 112899999884
Q ss_pred ccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC---eeeeeeeccCCCCCccccEEEEEEeCC---C
Q 004109 353 AKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP---C 424 (773)
Q Consensus 353 ~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~ 424 (773)
.+..|.|+|.|++|++|..+ +..+.+||||++.+ ++ .+.+|.++++++||+|||+|.|.|... .
T Consensus 294 -----~p~~g~ltv~v~kar~L~~~---~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~ 365 (421)
T KOG1028|consen 294 -----LPTAGRLTVVVIKARNLKSM---DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAE 365 (421)
T ss_pred -----ecCCCeEEEEEEEecCCCcc---cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhhe
Confidence 34459999999999999988 55689999999987 33 347999999999999999999987732 5
Q ss_pred ceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCc
Q 004109 425 TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 425 ~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~ 460 (773)
..|.|+|||+|.++ ++++||.+.+....
T Consensus 366 ~~l~l~V~d~d~~~--------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 366 VSLELTVWDHDTLG--------SNDLIGRCILGSDS 393 (421)
T ss_pred eEEEEEEEEccccc--------ccceeeEEEecCCC
Confidence 68999999999987 78899999998875
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=243.98 Aligned_cols=412 Identities=22% Similarity=0.286 Sum_probs=287.7
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCe
Q 004109 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDD 114 (773)
Q Consensus 36 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~ 114 (773)
..|++.+++.++++|..... ....-++++++++ ..+.|++++.+.+|.||+++...+.+.....+.+.++|.. ..+
T Consensus 577 n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~ 653 (1227)
T COG5038 577 NTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGK 653 (1227)
T ss_pred CcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCc
Confidence 35899999999999975431 2223348888887 4677899999999999999999998877888999999875 467
Q ss_pred eeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEeccCCCCCCccccccccccccccccccccccee
Q 004109 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVY 194 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (773)
.+|....+|.++.... .....||++..+ +|+|.++..+.|.... ....+..+
T Consensus 654 ~i~~~~~~l~~li~~t----~dt~~~f~~~~~-----kg~I~~t~~W~Pi~~~-------------------~~~~s~~~ 705 (1227)
T COG5038 654 VIATEGSTLPDLIDRT----LDTFLVFPLRNP-----KGRIFITNYWKPIYNA-------------------GGSSSKTV 705 (1227)
T ss_pred eeccccccchHhhhcc----ccceEEEEcCCC-----cceEEEEeccceeecc-------------------ccccceee
Confidence 8899999998888652 346789998754 4788888765542110 01122334
Q ss_pred ccCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccC
Q 004109 195 LSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVA 273 (773)
Q Consensus 195 ~~p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~ 273 (773)
....+|.++|.|..|.++......+.+|||+++.+++ .++||-.... +.||.||+....++..+ .+.+.++++|+..
T Consensus 706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~-~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~ 783 (1227)
T COG5038 706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSS-TLNPIWNEILYVPVTSK-NQRLTLECMDYEE 783 (1227)
T ss_pred ecCccceEEEEeehhhcccccccCcccccceEEEecceeEEEEecccC-ccccceeeeEEEEecCC-ccEEeeeeecchh
Confidence 5577899999999999999888889999999999998 5677777655 99999999998888775 3469999999999
Q ss_pred CCCCceeEEEEEeccccccccCCCCC--------------------------CceEEEcccCccc---------cccc--
Q 004109 274 PNKDEVLGKCMIPLQYVDKRLDHKPV--------------------------NTRWYNLEKHIVV---------EGEK-- 316 (773)
Q Consensus 274 ~~~d~~iG~~~i~L~~l~~~~~~~~~--------------------------~~~w~~L~~~~~~---------~~~~-- 316 (773)
.+.|..+|++.++++++..+.++... ..+.|+....... +.+.
T Consensus 784 sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~ 863 (1227)
T COG5038 784 SGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRK 863 (1227)
T ss_pred ccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHH
Confidence 99999999999999998763221100 0011111000000 0000
Q ss_pred ---------c---------------------cC--------------CceeeEE--------------EEEEEEcc-Ccc
Q 004109 317 ---------K---------------------KD--------------TKFASRI--------------HMRICLEG-GYH 337 (773)
Q Consensus 317 ---------~---------------------~~--------------~~~~G~l--------------~l~i~~~~-~~~ 337 (773)
. .+ .-..|-+ .+.+-++. .|.
T Consensus 864 ~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~ 943 (1227)
T COG5038 864 SEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHP 943 (1227)
T ss_pred hhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCc
Confidence 0 00 0001111 11111211 110
Q ss_pred cCCCCC--------c-----------c--------C----CC-------C-----------Ccc-----c--c-------
Q 004109 338 VLDEST--------H-----------Y--------S----SD-------L-----------RPT-----A--K------- 354 (773)
Q Consensus 338 ~~~~~~--------~-----------~--------~----~~-------~-----------~p~-----~--~------- 354 (773)
..-.+. . + . +| + .|. + .
T Consensus 944 ~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~ 1023 (1227)
T COG5038 944 QIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSY 1023 (1227)
T ss_pred eeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEE
Confidence 000000 0 0 0 00 0 000 0 0
Q ss_pred ---------ccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeC-C
Q 004109 355 ---------QLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFD-P 423 (773)
Q Consensus 355 ---------~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~-~ 423 (773)
..+-.+.|.|.|.+..|.||+.. |.+|.+||||++.++++ .++|+++++++||+|||++..+|.. .
T Consensus 1024 tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~---d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~ 1100 (1227)
T COG5038 1024 TPVPVKLPPVEMVENSGYLTIMLRSGENLPSS---DENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRV 1100 (1227)
T ss_pred eecccccCcceeecccCcEEEEEeccCCCccc---ccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccc
Confidence 00123579999999999999987 66799999999999887 6899999999999999999999994 5
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 424 ~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
.+.++|.|+|||.-. +++.||++.|+|+.+..+..+....+|.+.. .+ ...|.++....|
T Consensus 1101 ~D~~~i~v~Dwd~~~--------knd~lg~~~idL~~l~~~~~~n~~i~ldgk~-~~-~~~g~~~~~~~~ 1160 (1227)
T COG5038 1101 KDVLTINVNDWDSGE--------KNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT-FI-VLDGTLHPGFNF 1160 (1227)
T ss_pred cceEEEEEeecccCC--------CccccccccccHhhcCcCCccceeeeccCcc-eE-ecccEeecceec
Confidence 889999999998743 8999999999999999999998889886532 11 234555555555
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-23 Score=231.98 Aligned_cols=283 Identities=21% Similarity=0.277 Sum_probs=180.5
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEE--EeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCC
Q 004109 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQAL--RTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAP 274 (773)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~ 274 (773)
|..-.++|++++|-+|.+.|.+|.+||||++.+|++.. +...+.+ |+||+|++.|.+....+.+..++++|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 55567899999999999999999999999999998763 4555666 99999999999999999999999999999999
Q ss_pred CCCceeEEEEEeccc-cccccCCCCCCce---------EEEcccCccc------ccccccCCceeeEEEEEEEEccCcc-
Q 004109 275 NKDEVLGKCMIPLQY-VDKRLDHKPVNTR---------WYNLEKHIVV------EGEKKKDTKFASRIHMRICLEGGYH- 337 (773)
Q Consensus 275 ~~d~~iG~~~i~L~~-l~~~~~~~~~~~~---------w~~L~~~~~~------~~~~~~~~~~~G~l~l~i~~~~~~~- 337 (773)
+.|+.||+..++|+. .....+.+....+ |..-.++... .++. ..--+.+.. ..+.+.+...
T Consensus 689 ~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i-~~P~~~~e~-~~i~~~g~~~~ 766 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGI-PRPYYSYEV-SAIKWKGESDI 766 (1105)
T ss_pred cccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCC-CCCeecCCc-ceEEecChhhh
Confidence 999999999999985 3333333333322 3322111100 0000 000000000 0111111000
Q ss_pred ------------------------------cCCCC----CccCC------------------------CCCccccccccC
Q 004109 338 ------------------------------VLDES----THYSS------------------------DLRPTAKQLWKS 359 (773)
Q Consensus 338 ------------------------------~~~~~----~~~~~------------------------~~~p~~~~~~~~ 359 (773)
...+. +.++. .+.++. ..+
T Consensus 767 ~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itp---r~~ 843 (1105)
T KOG1326|consen 767 YDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITP---RKP 843 (1105)
T ss_pred hcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCC---CCh
Confidence 00000 00000 001110 123
Q ss_pred ccceEEEEEEEccCCCCCccC-CCCCCCCcEEEEEECC---eeeeeeeccCCC----CCccccEEEEEE-----------
Q 004109 360 SIGVLELGILNAQGLMPMKTK-DGRGTTDAYCVAKYGQ---KWVRTRTIIDSP----TPKWNEQYTWEV----------- 420 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~-~~~~~~dpyv~v~~~~---~~~~T~~~~~t~----~P~wne~~~f~v----------- 420 (773)
....++|.|-.-.++...|.. -+...+|.||+-.+-+ ++++|.+.++++ |-.|.-.|-|.-
T Consensus 844 ~~~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~k 923 (1105)
T KOG1326|consen 844 KKYELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAK 923 (1105)
T ss_pred hheeEEEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhh
Confidence 446788887777776654332 1233599999998843 458999988765 555643333311
Q ss_pred -------eC----CCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccc----------------------cCCeE
Q 004109 421 -------FD----PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE----------------------TDRVY 467 (773)
Q Consensus 421 -------~~----~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~----------------------~~~~~ 467 (773)
.+ ....|.|+|||.|.++ +|++||..+++|+++. ..+.+
T Consensus 924 ke~~ws~dete~k~p~rl~iqiWD~d~fs--------~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v 995 (1105)
T KOG1326|consen 924 KEYSWSLDETEFKIPARLIIQIWDNDKFS--------KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTV 995 (1105)
T ss_pred hhhccccccccccCchheEEEecccCccC--------hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccc
Confidence 01 1347999999999998 9999999999999982 13456
Q ss_pred EeeEEeEeecCCCcccccEEEEEEEE
Q 004109 468 THSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 468 ~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
.+||||.+.+.....-+|.+++.+.+
T Consensus 996 ~GWwP~~a~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 996 KGWWPCQAEEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred cccceeeecCCCcceecceeeeehhh
Confidence 78999998743322348999998876
|
|
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-22 Score=185.81 Aligned_cols=149 Identities=69% Similarity=1.135 Sum_probs=128.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeE
Q 004109 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLG 281 (773)
Q Consensus 202 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~iG 281 (773)
|+|+|++|++|+..+.+|.+||||++.++++.++|+++.+++.||.|||.|.|.+.++..+.+.|+|+|++..+++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 78999999999999999999999999999999999998654699999999999998777779999999999888899999
Q ss_pred EEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccCcccCCCCCccCCCCCc
Q 004109 282 KCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRP 351 (773)
Q Consensus 282 ~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p 351 (773)
++.++|+++....+.+....+||+|.+....+. .++..+..|+|++++++.+.|++.+++.+|++|++|
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~-~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAME-QKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCccc-ccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 999999998754334456789999998632111 123446789999999999999999999999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-22 Score=178.53 Aligned_cols=125 Identities=69% Similarity=1.174 Sum_probs=106.3
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 004109 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 442 (773)
.|+|+|++|+||+.+...|..|.+||||++++|+++.||+++++++||+|||+|.|.+.++...|+|+|||++..+- +.
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~-~~ 79 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHW-KE 79 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccc-cc
Confidence 37899999999433333377799999999999999999999999999999999999999888899999999987510 00
Q ss_pred CCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEE
Q 004109 443 AGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHL 489 (773)
Q Consensus 443 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l 489 (773)
...+|++||++.|+++.+..+..+..||||.+.+.+|.++.|+|++
T Consensus 80 -~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 80 -AVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred -cCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 0126899999999999999999999999999888777778898875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-22 Score=212.60 Aligned_cols=246 Identities=21% Similarity=0.374 Sum_probs=191.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCce
Q 004109 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEV 279 (773)
Q Consensus 201 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~ 279 (773)
.|+|.|.||+||+..+.+|..||||.|.+.+ ...+|.++.+ ++.|.|.|+|.|.+...+ ..|.|.|||.| +++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcce-eeEEEEEeccc-cccccc
Confidence 5899999999999999999999999999987 5789999987 999999999999997644 47999999999 999999
Q ss_pred eEEEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccCcccCCCCCccCCCCCccccccccC
Q 004109 280 LGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKS 359 (773)
Q Consensus 280 iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 359 (773)
||.+.|.-.+|... +..+.|+.|.+-+ .+..+.|++++++.+.....
T Consensus 83 IGKvai~re~l~~~----~~~d~W~~L~~VD-------~dsEVQG~v~l~l~~~e~~~---------------------- 129 (800)
T KOG2059|consen 83 IGKVAIKREDLHMY----PGKDTWFSLQPVD-------PDSEVQGKVHLELALTEAIQ---------------------- 129 (800)
T ss_pred cceeeeeHHHHhhC----CCCccceeccccC-------CChhhceeEEEEEEeccccC----------------------
Confidence 99999998888642 3578999999863 34468999999998643310
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCee----eeeeeccCCCCCccccEEEEEEeCC------------
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW----VRTRTIIDSPTPKWNEQYTWEVFDP------------ 423 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~----~~T~~~~~t~~P~wne~~~f~v~~~------------ 423 (773)
...+...++.++++.+. .++.+||||++...+.. .+|+++++|.+|.|+|.|.|.+...
T Consensus 130 -~~~~~c~~L~~r~~~P~----~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~ 204 (800)
T KOG2059|consen 130 -SSGLVCHVLKTRQGLPI----INGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPE 204 (800)
T ss_pred -CCcchhhhhhhcccCce----eCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcc
Confidence 01223334445555553 23459999999987655 4999999999999999999988743
Q ss_pred ----CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcc-----cccEEEEEEEEe
Q 004109 424 ----CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-----KMGEIHLAVRFT 494 (773)
Q Consensus 424 ----~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-----~~G~v~l~~~~~ 494 (773)
-..|+|.+|++..+. ..++|+|++++++..+........||-|..... |.+ ..|.+++.+.++
T Consensus 205 ~e~~~l~irv~lW~~~~~~-------~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~-g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 205 EEDDMLEIRVDLWNDLNLV-------INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPN-GEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred cCCceeeEEEeeccchhhh-------hhhhhceeEEeehhhhhhccCccceEEEecCCC-cccCCCCCCccceeeeEEee
Confidence 347889999854331 268999999999999886666789999976433 321 247777777764
Q ss_pred e
Q 004109 495 C 495 (773)
Q Consensus 495 ~ 495 (773)
-
T Consensus 277 ~ 277 (800)
T KOG2059|consen 277 E 277 (800)
T ss_pred e
Confidence 3
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-22 Score=212.35 Aligned_cols=249 Identities=21% Similarity=0.320 Sum_probs=196.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeeeE
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMG 117 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG 117 (773)
.|+|+|.+|+||++.+..|+.||||.|.++. ...||.++.+++.|.|.|.|+|.+.. .-..|.|-|||.|..+|+.||
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d~~~D~~IG 84 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRDLKRDDIIG 84 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccccccccccc
Confidence 6899999999999999999999999999997 57999999999999999999999875 357799999999933999999
Q ss_pred EEEEEcCccCCCCCCCCCCcCeEEEeeeCC-CCceeeEEEEEEEEeccCCCCCCcccccccccccccccccccccceecc
Q 004109 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLS 196 (773)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (773)
.+.|.=.+|...+ ..+.|+.|..-. ..+.+|+|++++.+.....
T Consensus 85 Kvai~re~l~~~~-----~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~------------------------------ 129 (800)
T KOG2059|consen 85 KVAIKREDLHMYP-----GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ------------------------------ 129 (800)
T ss_pred eeeeeHHHHhhCC-----CCccceeccccCCChhhceeEEEEEEeccccC------------------------------
Confidence 9999988887653 357899998876 4468899999986643111
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE----EEEeecccCCCCCccccceEEEEeeCC-------------
Q 004109 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQ----ALRTRVSASRTINPMWNEDLMFVAAEP------------- 259 (773)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~----~~kT~~~~~~t~nP~wne~f~f~~~~~------------- 259 (773)
...+...+++++++.+... +.+|||+++...+. ..+|++.++ |.+|.|+|.|.|.+...
T Consensus 130 --~~~~~c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 130 --SSGLVCHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred --CCcchhhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCccc
Confidence 0124555667777776654 45999999999763 358888877 99999999999988654
Q ss_pred --CCCeEEEEEEE-ccCCCCCceeEEEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEc
Q 004109 260 --FEEHLILTVED-RVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLE 333 (773)
Q Consensus 260 --~~~~l~i~V~d-~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~ 333 (773)
....|.+.+|+ ++....+.++|++.+++..+.. ......||-|.+.+ .+++..+++-.|.+.+.+++.
T Consensus 206 e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~----~s~p~~W~~Lqp~~--~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQ----KSSPAAWYYLQPRP--NGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred CCceeeEEEeeccchhhhhhhhhceeEEeehhhhhh----ccCccceEEEecCC--CcccCCCCCCccceeeeEEee
Confidence 22357788888 4556679999999999998763 23477899999874 333344556678888888754
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-21 Score=172.85 Aligned_cols=118 Identities=23% Similarity=0.380 Sum_probs=103.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccC-CCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 440 (773)
|.|+|+|++|++|+.. + .|++||||++.+|++++||+++.+ +.||+|||+|.|++.+....|.|+|||+|.++
T Consensus 2 g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~-- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT-- 75 (121)
T ss_pred cEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc--
Confidence 8999999999998754 3 578999999999999999999876 89999999999999877788999999999886
Q ss_pred CCCCCCCCCccEEEEEecC-ccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 441 DKAGGARDSRIGKVRIRLS-TLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 441 ~~~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+|++||.+.|++. .+..++..+.||+|... +|..+.|+|+|.++|
T Consensus 76 ------~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ------MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY 121 (121)
T ss_pred ------CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence 8999999999996 68888888999999753 344567999999875
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-21 Score=171.01 Aligned_cols=117 Identities=20% Similarity=0.320 Sum_probs=102.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCC-CCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004109 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEK-KTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~-~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (773)
|.|.|+|++|++++..+ .|++||||++++++++++|+++.+ +.||+|||+|.|.+.+. ...|.|+|||.|.+ +|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 78999999999998777 789999999999999999999865 79999999999999753 46799999999998 8999
Q ss_pred eEEEEEEcCc-cCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEE
Q 004109 116 MGRVLFDLNE-IPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (773)
Q Consensus 116 lG~~~i~l~~-l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (773)
||++.+++.+ +..+ ...+.||+|....+....|+|++++.|
T Consensus 80 iG~~~i~l~~~~~~g-----~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNG-----ETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCC-----CCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999964 5543 236899999987776678999999865
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-21 Score=171.85 Aligned_cols=121 Identities=74% Similarity=1.243 Sum_probs=108.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeeeEE
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGR 118 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~ 118 (773)
+|.|+|++|+||+.. .+||||++.+++++.+|++++++.||+|||+|.|.+..+....|.|+|||++..++++||+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 489999999999876 6899999999999999999999999999999999987767789999999999778999999
Q ss_pred EEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004109 119 VLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 119 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
+.++++++..+...++....+||+|.+..+.+.+|+|++++||++
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~~ 121 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFGT 121 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEecC
Confidence 999999998765444556789999999877678899999999973
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-20 Score=170.05 Aligned_cols=118 Identities=25% Similarity=0.411 Sum_probs=101.5
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeC------CCceEEEEEEeCCCC
Q 004109 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD------PCTVITIGVFDNCHL 437 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~------~~~~l~v~v~d~~~~ 437 (773)
++|+|++|+||+.+ +..|.+||||++.++++++||+++++++||+|||.|.|.+.. ....|.+.|||++.+
T Consensus 1 ~~V~V~~A~~L~~~---d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK---GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC---CCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999986 456889999999999999999999999999999999999976 367999999999987
Q ss_pred CCCCCCCCCCCCccEEEEEecCccc--cCCeEEeeEEeEeecCCCcccccEEEEEEE
Q 004109 438 HGGDKAGGARDSRIGKVRIRLSTLE--TDRVYTHSYPLLVLYPNGVKKMGEIHLAVR 492 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~ 492 (773)
+ +|++||++.|+++++. .+.....||+|.....+..+..|+|+|+++
T Consensus 78 ~--------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 G--------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred C--------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 6 7999999999999987 667788999997644333345699998874
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-20 Score=167.06 Aligned_cols=117 Identities=31% Similarity=0.562 Sum_probs=101.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecC-----CCCceEEEEEEeCCCC-CC
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDR-----IQSSVLEVTVKDKDFV-KD 113 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~-----~~~~~l~i~V~d~~~~-~d 113 (773)
++|+|++|+||+..+..|.+||||++++++++++|++++++.||+|||+|.|.+.. +....|.|+|||.+.+ +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999888999999999999999999999999999999999999865 3567899999999988 89
Q ss_pred eeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC--CceeeEEEEEE
Q 004109 114 DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAV 159 (773)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~ 159 (773)
++||++.|+|.++.... .....+||+|....+ .+..|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~---~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDK---GRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccC---CCcccEEEECcCCCCCCccccceEEEEe
Confidence 99999999999987422 223579999987554 24679999886
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-20 Score=167.70 Aligned_cols=95 Identities=28% Similarity=0.519 Sum_probs=89.2
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG 439 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~ 439 (773)
..|.|+|.|++|.||... |..++|||||++++|+++.||+++++++||+|||.|+|.+.+++..|++.|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~r---D~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIR---DFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeeee---ccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 459999999999999876 5558999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCccEEEEEecCccccCC
Q 004109 440 GDKAGGARDSRIGKVRIRLSTLETDR 465 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~~~ 465 (773)
.||+||.+.|+|..+....
T Consensus 80 -------~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 80 -------SDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred -------cccccceeeeccHHHHHHh
Confidence 8999999999999997765
|
|
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-19 Score=163.64 Aligned_cols=120 Identities=28% Similarity=0.388 Sum_probs=106.1
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 004109 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 441 (773)
.|+|+|++|+||+.. +..|.+||||++.+++ ..++|+++.++.||.|||.|.|.+.++...|.|+|||++..+
T Consensus 1 ~L~v~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~--- 74 (121)
T cd04042 1 QLDIHLKEGRNLAAR---DRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL--- 74 (121)
T ss_pred CeEEEEEEeeCCCCc---CCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC---
Confidence 378999999999987 4458899999999987 578999999999999999999999887889999999999876
Q ss_pred CCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEee
Q 004109 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
+|++||++.++++++..+.....|++|.+.+ +.+..|+|++.++|+|
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 -----TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLTP 121 (121)
T ss_pred -----CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEECC
Confidence 7999999999999999998899999996532 3356799999999854
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-19 Score=167.62 Aligned_cols=124 Identities=31% Similarity=0.543 Sum_probs=107.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCC-CCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEK-KTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~-~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (773)
+|+|+|++|+||+..+..|.+||||++++++++.+|+++.+ +.||+|||+|.|.+.++..+.|.|+|+|.+.. +|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 48999999999999999999999999999999999999966 69999999999999776667899999999987 89999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC-------CceeeEEEEEEEEec
Q 004109 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-------DKVRGELMLAVWMGT 163 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-------~~~~G~i~l~~~~~~ 163 (773)
|++.++|.++..+. .......+||+|.+..+ .+..|+|++.+.+..
T Consensus 81 G~v~i~L~~l~~~~-~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 81 GRAVIPLNDIERRV-DDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEEEEHHHCcccC-CCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 99999999997542 12345689999998754 356799999998863
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-19 Score=168.28 Aligned_cols=123 Identities=25% Similarity=0.330 Sum_probs=107.8
Q ss_pred ceEEEEEEEccCCCCCccC---------------------------CCCCCCCcEEEEEECCee-eeeeeccCCCCCccc
Q 004109 362 GVLELGILNAQGLMPMKTK---------------------------DGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWN 413 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~---------------------------~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wn 413 (773)
|.|.|+|++|++|+++|.. .+.|.+||||+|.+++.. .||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 8999999999999998731 246779999999999865 699999999999999
Q ss_pred cEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 414 EQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 414 e~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
|+|.|.+.++.+.|.|.|+|+|.++ +++||++.|+++++..+.....||+|.....++.+..|+|+++++|
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~~---------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVVG---------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCcC---------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 9999999888889999999998763 6899999999999998988999999987655555556899999998
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-19 Score=161.74 Aligned_cols=119 Identities=38% Similarity=0.513 Sum_probs=103.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCC---CCceEEEEEEeCCCC--CCe
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI---QSSVLEVTVKDKDFV--KDD 114 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~---~~~~l~i~V~d~~~~--~d~ 114 (773)
|+|+|++|++|+..+..+.+||||++.+++++++|++++++.||+|||+|.|.+.+. ....|.|+|||.+.. +++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 899999999999998889999999999999999999999999999999999998643 246899999999876 799
Q ss_pred eeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC-CCceeeEEEEEEEEe
Q 004109 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVWMG 162 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~~~ 162 (773)
+||++.+++.++... .....+||+|+.+. ..+.+|+|.+++++.
T Consensus 82 ~lG~v~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 82 FLGRVRISGTSFVPP----SEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred eeeEEEEcHHHcCCC----CCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 999999999999832 23467999999764 234689999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-19 Score=159.71 Aligned_cols=118 Identities=29% Similarity=0.485 Sum_probs=105.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (773)
+|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.+. ...|.|+|||.+.. +|++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 4899999999999999889999999999988 678999999999999999999998765 57899999999998 99999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEe
Q 004109 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (773)
|.+.+++.++..+.. ...|++|.+..+.+..|+|++.+.+.
T Consensus 80 G~~~~~l~~l~~~~~-----~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKP-----TEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCC-----eEEEEECCCCCCccCceEEEEEEEEC
Confidence 999999999986532 56899998876656789999998775
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-19 Score=193.80 Aligned_cols=180 Identities=22% Similarity=0.332 Sum_probs=152.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHHHHHccch--hHHHHHHHHHHHHhhcccc-CCCC
Q 004109 563 SMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPITTVLIHILFIILVLYPEL--ILPTVFLYLFLIGVWYYRW-RPRH 639 (773)
Q Consensus 563 s~~~~~~n~~Rl~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l--~~p~~~l~l~~~~~~~~~~-~~~~ 639 (773)
...-+-+|+.-|++++.|+..++.+++.+.+||+|.+|+.|++++++++|..|+ ++|++++++++.|++.+.. +.+.
T Consensus 481 kveGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~ 560 (683)
T PF04842_consen 481 KVEGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLGK 560 (683)
T ss_pred hhcCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 344567899999999999999999999999999999999999999999999887 6999999999999997664 3332
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCCChhhHHHHHH
Q 004109 640 PPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVI 719 (773)
Q Consensus 640 ~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~nl~~w~~p~~t~~~~~ 719 (773)
+. ++....++... .-.+++-++|+.+.++++.|+.++.++.|+|+++.|..|++|..+++
T Consensus 561 ~~------------------~~v~V~~pP~~--nTvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~ 620 (683)
T PF04842_consen 561 SF------------------GEVTVRDPPPK--NTVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVAL 620 (683)
T ss_pred cc------------------ceEEecCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 21 22222111122 22489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHhhhhhh-hccCCccCCCCCCchhhhhhcC
Q 004109 720 FCLIAAIVLYVTPFQVVALLTGFY-VLRHPRFRHKLPSVPLNFFRRL 765 (773)
Q Consensus 720 ~l~~~~~~~~~vP~r~i~l~~g~~-~~~~P~~r~~~~~~~~~~~~r~ 765 (773)
+++++|+++.++|+||++++..+. |+|+..+|+. +...|.||+
T Consensus 621 ~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~---s~er~~RRl 664 (683)
T PF04842_consen 621 ALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRRE---SSERFNRRL 664 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchh---hHHHHHHHH
Confidence 999999999999999999998888 8999889986 666776664
|
|
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-19 Score=158.96 Aligned_cols=113 Identities=31% Similarity=0.407 Sum_probs=97.9
Q ss_pred EEEEEEEEeec---CCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC----
Q 004109 39 YLYVRVVKAKD---LPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV---- 111 (773)
Q Consensus 39 ~L~V~v~~a~~---L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~---- 111 (773)
.|.|+|++|+| |+..|..|++||||++++++++.+|++++++.||+|||+|.|.+.+. ...|.|+|||.+..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~~~ 79 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWKE 79 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCccccc
Confidence 38999999999 88889999999999999999999999999999999999999999764 45899999999875
Q ss_pred ---CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC--CCceeeEEEE
Q 004109 112 ---KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK--GDKVRGELML 157 (773)
Q Consensus 112 ---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l 157 (773)
+|++||++.++|..+..+. ....||+|.+.. +.+..|+|.+
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 80 AVQPDVLIGKVRIRLSTLEDDR-----VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cCCCCceEEEEEEEHHHccCCC-----EEeeEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999998653 357899999765 2334577764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.3e-19 Score=161.27 Aligned_cols=124 Identities=30% Similarity=0.519 Sum_probs=105.6
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-C
Q 004109 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K 112 (773)
Q Consensus 34 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~ 112 (773)
-+.+|.|+|+|++|++|+..+..|.+||||++.++++.++|++++++.||.|||+|.|.+.++..+.|.|+|||.+.. +
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 367799999999999999999889999999999999999999999999999999999999877778999999999988 8
Q ss_pred CeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEE
Q 004109 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (773)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (773)
|++||++.+++.++............+|..|.. ...|+|++++.+
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~~~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLLHE----VPTGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEecccc----ccceeEEEEEEe
Confidence 999999999999998632222233446666632 346999999865
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-19 Score=158.04 Aligned_cols=119 Identities=28% Similarity=0.420 Sum_probs=102.6
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 004109 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 442 (773)
|.|.|++|+||++++. ..|.+||||.+.++++ ..+|+++++|+||.|||+|.|.+.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~~--~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSG--PNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCCC--CCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 6799999999998642 2468999999999876 57999999999999999999999876789999999999876
Q ss_pred CCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 443 AGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 443 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+|++||++.++++++..++....||+|......+. ..|+|+|+++|
T Consensus 76 ----~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 ----RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred ----CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 79999999999999988888899999976544332 46999998875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.8e-19 Score=158.47 Aligned_cols=117 Identities=29% Similarity=0.451 Sum_probs=102.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccC-CCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004109 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~-~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (773)
|.|+|+|++|+||+..+..+.+||||++.+++++.+|+++. ++.||+|||.|.|.+.....+.|.|+|||.+..+|++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 57999999999999999889999999999999999999885 57899999999999976556889999999987778999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEE
Q 004109 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (773)
|++.+++.++..+. ...+|++|.... +..|+|++++.|
T Consensus 81 G~~~~~l~~~~~~~-----~~~~w~~L~~~~--~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEG-----EFDDWYELTLKG--RYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcC-----CCCCcEEeccCC--cEeeEEEEEEEC
Confidence 99999999987642 257999998643 467999998864
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-19 Score=158.86 Aligned_cols=110 Identities=31% Similarity=0.531 Sum_probs=96.0
Q ss_pred CcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEe---cC
Q 004109 24 GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSK---DR 95 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v---~~ 95 (773)
...++++|+ .+.|.|+|++|+||+..+ .+.+||||++++.+ .+++|++++++.||+|||+|.|.+ .+
T Consensus 3 ~l~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~ 77 (122)
T cd08381 3 QVKLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED 77 (122)
T ss_pred eEEEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence 457888888 468999999999999999 89999999999973 468999999999999999999986 34
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004109 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
+....|.|+|||++.. ++++||++.++|.++..+. ....||+|
T Consensus 78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L 121 (122)
T cd08381 78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ-----ETEKWYPL 121 (122)
T ss_pred hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCC-----CccceEEC
Confidence 5678999999999988 8999999999999998653 35789987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-19 Score=191.29 Aligned_cols=214 Identities=21% Similarity=0.322 Sum_probs=156.0
Q ss_pred CCCccccccchhhHHHHH-HHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHHHHHccchhHHHHHHHHHHHHh----h
Q 004109 557 VGSHMWSMRRSKANFFRI-MGVLSGIIAVGKWFDQICNWKNPITTVLIHILFIILVLYPELILPTVFLYLFLIGV----W 631 (773)
Q Consensus 557 ~~~~~~s~~~~~~n~~Rl-~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l~~p~~~l~l~~~~~----~ 631 (773)
++.++||..+||+|++|| ..++-.+.++.+++.+|.+|++|+||++||++|++ +|+.++++|+++..++++.+ +
T Consensus 83 a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~-aW~~dll~p~~~~~L~~li~~P~~r 161 (642)
T PF11696_consen 83 AEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFI-AWLLDLLVPAFFAFLIALILSPPAR 161 (642)
T ss_pred cccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccc
Confidence 788999999999999999 55888999999999999999999999999999988 99999999999987777666 5
Q ss_pred ccccCCCCCCCCCCCcCCC-----------CC--------------------------------------CCCCCCCCCC
Q 004109 632 YYRWRPRHPPHMDTRLSHA-----------DS--------------------------------------AHPDELDEEF 662 (773)
Q Consensus 632 ~~~~~~~~~~~~~~~~s~~-----------~~--------------------------------------~~~~~~~~e~ 662 (773)
.++++|.+++.++....+. ++ +++++..++.
T Consensus 162 ~~lFPpap~alvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAvEqEAsNfV~siasvav~saaGK~~q~~p~~~~~~~ 241 (642)
T PF11696_consen 162 SILFPPAPPALVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAVEQEASNFVNSIASVAVSSAAGKHPQGDPDDDPEED 241 (642)
T ss_pred cccCCCCCcccccCCCCCccccccccccccccccCCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCccC
Confidence 6788887766555332100 00 0112111111
Q ss_pred -CCCCC-------------------CCChhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCCChh--------hH
Q 004109 663 -DTFPT-------------------SRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPR--------AT 714 (773)
Q Consensus 663 -~~~~~-------------------~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~nl~~w~~p~--------~t 714 (773)
..++. ....+.-..--.++...+..+|++|++++|.+||+-|+|+.+-|| +.
T Consensus 242 ~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~~~v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~RlRLa 321 (642)
T PF11696_consen 242 SEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMKEAVWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPRLRLA 321 (642)
T ss_pred CCCChhhhhHhhhhhhhhccCCCCCCccchhhchHHHHHHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHHHHHH
Confidence 00000 000001011122355678999999999999999999999999998 45
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhhhhhccCCccC-------CCCCCc-----h-hhhhhcCCCCccC
Q 004109 715 ALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFR-------HKLPSV-----P-LNFFRRLPARTDC 771 (773)
Q Consensus 715 ~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~~~P~~r-------~~~~~~-----~-~~~~~r~ps~~~~ 771 (773)
..++.+++++.++..++-.|.+.|++|+.||+.|-++ +++|+- + .-.|+.||+|+++
T Consensus 322 ~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r~~~~Lnr~~P~W~k~leLrntlLkGVPTNAQL 391 (642)
T PF11696_consen 322 AILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITRGIDYLNRKYPNWQKLLELRNTLLKGVPTNAQL 391 (642)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCchHHH
Confidence 5667777777788888899999999999999999875 344442 1 2347889988764
|
|
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-19 Score=160.86 Aligned_cols=94 Identities=40% Similarity=0.604 Sum_probs=89.0
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CC
Q 004109 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KD 113 (773)
Q Consensus 35 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d 113 (773)
...|.|+|+|++|.||..+|..+++||||.+++++++.+|+++++++||+|||.|.|.+.++ ...|.++|||+|.+ +|
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCcc
Confidence 45789999999999999999879999999999999999999999999999999999999986 67899999999999 99
Q ss_pred eeeEEEEEEcCccCCC
Q 004109 114 DFMGRVLFDLNEIPKR 129 (773)
Q Consensus 114 ~~lG~~~i~l~~l~~~ 129 (773)
|+||.++|+|..+...
T Consensus 82 D~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEA 97 (168)
T ss_pred cccceeeeccHHHHHH
Confidence 9999999999999865
|
|
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=158.98 Aligned_cols=119 Identities=28% Similarity=0.470 Sum_probs=102.1
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCC
Q 004109 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCH 436 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~ 436 (773)
...+|.|+|+|++|+||+.. +..|.+||||++.++++.++|++++++.||.|||.|.|.+.++ ...|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~---d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPC---NSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 56779999999999999987 4558899999999999999999999999999999999999875 5789999999998
Q ss_pred CCCCCCCCCCCCCccEEEEEecCcccc-----CCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 437 LHGGDKAGGARDSRIGKVRIRLSTLET-----DRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 437 ~~~~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
++ +|++||++.++++++.. ...+..|.++. + +..|+|+|++.|
T Consensus 88 ~~--------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~ 135 (136)
T cd08375 88 FS--------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDL 135 (136)
T ss_pred CC--------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEe
Confidence 75 78999999999999865 34455566652 2 345999999987
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=156.90 Aligned_cols=119 Identities=25% Similarity=0.473 Sum_probs=101.2
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCee-eeeeeccCCCCCccccEEEEEEeCCC-ceEEEEEEeCCCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPC-TVITIGVFDNCHLHG 439 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v~d~~~~~~ 439 (773)
..|+|.|++|+||+.. +.+||||++.+++.. .||++ +++.||.|||.|.|++..+. ..++|.|||++..+
T Consensus 4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC-
Confidence 5799999999999853 468999999998854 68887 56899999999999876653 68999999998876
Q ss_pred CCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEee
Q 004109 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
+|++||++.|+|.++..+.....||+|......+.+..|+|+|+++|..
T Consensus 76 -------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 -------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred -------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 8999999999999999998889999998754434456799999999954
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=156.61 Aligned_cols=116 Identities=26% Similarity=0.493 Sum_probs=100.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccC-CCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHG 439 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~ 439 (773)
|.|+|.|++|+||+.. +..+.+||||++.+++...+|+++.+ ++||.|||.|.|.+..+ ...|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNK---RKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCC---CcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 6899999999999987 45588999999999999999999865 79999999999999874 67899999998764
Q ss_pred CCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+|++||++.++++++..+.....||+|.. +| +..|+|+|+++|
T Consensus 76 -------~~~~iG~~~~~l~~~~~~~~~~~w~~L~~---~~-~~~G~i~l~l~f 118 (118)
T cd08681 76 -------KPDLIGDTEVDLSPALKEGEFDDWYELTL---KG-RYAGEVYLELTF 118 (118)
T ss_pred -------CCcceEEEEEecHHHhhcCCCCCcEEecc---CC-cEeeEEEEEEEC
Confidence 37899999999999877767789999964 23 456999999875
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-18 Score=157.00 Aligned_cols=121 Identities=30% Similarity=0.456 Sum_probs=105.2
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCe
Q 004109 38 QYLYVRVVKAKDLPPKDV--TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDD 114 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~--~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~ 114 (773)
|.|+|+|++|+||+..+. .+.+||||++.+++++++|++++++.||.|||+|.|.+.+.....|.|+|||.+.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 689999999999999887 78999999999999999999999999999999999999876678999999999988 899
Q ss_pred eeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC---CceeeEEEEEEE
Q 004109 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG---DKVRGELMLAVW 160 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~~~ 160 (773)
+||++.+++.++..+.. .....+||+|.+... ....|+|++++.
T Consensus 81 ~lG~~~i~l~~~~~~~~--~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 81 YLGEFDIALEEVFADGK--TGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred cceEEEEEHHHhhcccc--cCccceeEEccCcccCccccccceEEEEEE
Confidence 99999999999985321 234579999998742 236899999874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=151.71 Aligned_cols=108 Identities=19% Similarity=0.352 Sum_probs=89.3
Q ss_pred ceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeccCCCCCCeeecEEEEEec--CCCCc
Q 004109 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQSS 99 (773)
Q Consensus 26 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~----~~~~T~~~~~~~nP~WnE~f~f~v~--~~~~~ 99 (773)
.+++.|+ +..+.|.|+|++|+||+ . .|.+||||++.+.. .+++|++.++|+||+|||+|.|.+. ++...
T Consensus 4 ~fsL~Y~--~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 4 HYSLSYD--KQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDG 78 (118)
T ss_pred EEEEEEc--CcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence 3455555 66789999999999999 3 36699999999964 4779999999999999999999984 46678
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004109 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
.|.|.|||+|++ ++++||++.+++.++.... ...+|-+|
T Consensus 79 tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~-----~~~~W~~~ 118 (118)
T cd08677 79 TLTLTLRCCDRFSRHSTLGELRLKLADVSMML-----GAAQWVDL 118 (118)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEccccccCCc-----cccchhcC
Confidence 899999999999 9999999999999875442 23467553
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-18 Score=152.35 Aligned_cols=113 Identities=36% Similarity=0.588 Sum_probs=100.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (773)
+|+|+|++|+||+..+..+.+||||++++++++.+|++++++.||.|||+|.|.+.+.....|.|+|||++.. ++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 4789999999999998889999999999999999999999999999999999999776678999999999988 899999
Q ss_pred EEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEE
Q 004109 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (773)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (773)
++.++|.++..+. ....|++|.+. .|+|++.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~-----~G~~~~~~~~ 114 (116)
T cd08376 81 RCEIDLSALPREQ-----THSLELELEDG-----EGSLLLLLTL 114 (116)
T ss_pred EEEEeHHHCCCCC-----ceEEEEEccCC-----CcEEEEEEEe
Confidence 9999999988653 35789999864 3888887755
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-18 Score=152.58 Aligned_cols=113 Identities=25% Similarity=0.469 Sum_probs=101.2
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCC
Q 004109 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~ 441 (773)
+++|.|++|+||+.. +..+.+||||++.++++..+|++++++.||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~~~V~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~--- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPM---DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK--- 74 (116)
T ss_pred CEEEEEEEEECCCCC---CCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC---
Confidence 478999999999987 4457899999999999999999999999999999999999876 789999999998875
Q ss_pred CCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+|++||++.++++++..++....|++|.. ..|++++++.+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~ 114 (116)
T cd08376 75 -----KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTL 114 (116)
T ss_pred -----CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEe
Confidence 79999999999999999888999999953 14899888776
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-18 Score=153.12 Aligned_cols=118 Identities=26% Similarity=0.462 Sum_probs=102.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 441 (773)
|.|+|.|++|+||+.+ +..+.+||||++.+++...+|++++++.||.|||+|.|++.+....+.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 6899999999999987 4457899999999999999999999999999999999999877889999999998765
Q ss_pred CCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
++++||++.+++.++..+. ..||+|......+ +..|+|.++++|
T Consensus 75 -----~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 75 -----KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred -----CCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 7899999999999998765 5799997643333 346999999887
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-18 Score=150.71 Aligned_cols=102 Identities=29% Similarity=0.430 Sum_probs=89.2
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004109 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (773)
|+.|.|+|++|++|+..+ ..||||++++++++.+|++.++ .||.|||+|.|.+.+.. ..|.|+|||++..+|++|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCce
Confidence 578999999999997544 5699999999999999999987 59999999999998754 449999999997799999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004109 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
|++.|+|.++..+. .+..++||+|...
T Consensus 76 G~v~i~L~~v~~~~---~~~~~~Wy~L~~~ 102 (127)
T cd08394 76 GTVWIPLSTIRQSN---EEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEEhHHcccCC---CCCCCccEecChH
Confidence 99999999998763 4567899999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-18 Score=154.61 Aligned_cols=120 Identities=20% Similarity=0.353 Sum_probs=101.9
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC--eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 004109 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ--KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 441 (773)
|.|+|++|+||+. ..|.+||||++.+++ +..||+++++++||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5789999999985 347899999999974 568999999999999999999999766788999999998865
Q ss_pred CCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEeec
Q 004109 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~ 496 (773)
+|++||++.++++++..+.....|++|......+.+..|+|+++++|...
T Consensus 73 -----~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 73 -----DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred -----CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 79999999999999988877789999975432233457999999999544
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-18 Score=154.81 Aligned_cols=118 Identities=22% Similarity=0.355 Sum_probs=99.3
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC-
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR- 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~- 95 (773)
|..++++.|+... +.|.|+|++|+||++.+.. |.+||||++.+.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~Y~~~~--~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 2 GEIEFALHYNFRT--SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred cEEEEEEEEeCCC--CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH
Confidence 4567888888544 6999999999999998864 8999999999963 36799999999999999999999843
Q ss_pred -CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004109 96 -IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 96 -~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
+....|.|.|||.+.. ++++||++.|+|.++..... .+...+||+|.
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~--~~~~~~W~~l~ 128 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDT--DSQRFLWYPLN 128 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCC--CccccceEECc
Confidence 4467999999999988 99999999999999976532 23568999973
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-18 Score=155.25 Aligned_cols=121 Identities=32% Similarity=0.484 Sum_probs=101.8
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC----CceEEEEEEeCCCCC
Q 004109 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGVFDNCHLH 438 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v~d~~~~~ 438 (773)
.|.|+|++|+||+.. +..|.+||||++.++++..||++++++.||.|||.|.|.+.++ ...|.|.|||++.++
T Consensus 1 ~L~V~vi~A~~L~~~---d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPK---DGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 478999999999987 4557899999999999999999999999999999999999864 358999999988752
Q ss_pred CCCCCCCCCCCccEEEEEecCccc-cCCeEEeeEEeEeecCCCcccccEEEEEEEEe
Q 004109 439 GGDKAGGARDSRIGKVRIRLSTLE-TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (773)
Q Consensus 439 ~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~ 494 (773)
.+|++||++.++++++. .+.....||+|......+ +..|+|+|++.++
T Consensus 78 -------~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~ 126 (127)
T cd04022 78 -------RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFS-RVRGEIGLKVYIT 126 (127)
T ss_pred -------CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCC-CccEEEEEEEEEc
Confidence 15889999999999987 566778999997643332 3469999998774
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.9e-18 Score=152.73 Aligned_cols=100 Identities=22% Similarity=0.354 Sum_probs=89.1
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeC----CCceEEEEEE
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVF 432 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~ 432 (773)
+.|.|.|++|+||+++ + .+.+||||++.+.+ .+.||++++++.||.|||+|.|++.. ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~---~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLL---D-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCC---C-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 7899999999999987 4 57899999999963 46899999999999999999999832 3679999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004109 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
|+|.++ ++++||++.|+|+++..++....||+|
T Consensus 89 d~d~~~--------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV--------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc--------CCcEEEEEEEeccccccCCCccceEEC
Confidence 999876 789999999999999988888899997
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.8e-18 Score=154.70 Aligned_cols=115 Identities=27% Similarity=0.477 Sum_probs=97.3
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec--
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD-- 94 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~-- 94 (773)
|...+++.|+ +..+.|.|+|++|+||++.+.. |.+||||++++.+ .+++|++++++.||+|||+|.|.+.
T Consensus 2 G~i~~sl~y~--~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 2 GSVQFALDYD--PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred cEEEEEEEEE--CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 4456777776 4457899999999999999875 8999999999953 3579999999999999999999985
Q ss_pred CCCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004109 95 RIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 95 ~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
++....|.|+|||.+.. ++++||++.++|.++..+. ....||+|+
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSN-----TQPTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCC-----CCcceEECc
Confidence 35567899999999988 8999999999999997542 356899874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=7e-18 Score=155.06 Aligned_cols=123 Identities=24% Similarity=0.428 Sum_probs=102.9
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHLHGG 440 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~~~~ 440 (773)
|.|+|.|++|+||+..+.. +.+.+||||++.+++...+|++++++.||.|||+|.|++.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~-~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~-- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRS-GKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA-- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCC-CCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC--
Confidence 6899999999999987331 15789999999999999999999999999999999999997 4789999999998865
Q ss_pred CCCCCCCCCccEEEEEecCccc---cCCeEEeeEEeEeecCC-CcccccEEEEEEEE
Q 004109 441 DKAGGARDSRIGKVRIRLSTLE---TDRVYTHSYPLLVLYPN-GVKKMGEIHLAVRF 493 (773)
Q Consensus 441 ~~~~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~~-g~~~~G~v~l~~~~ 493 (773)
++++||++.+++.++. .......||+|...... .....|+|+|++.|
T Consensus 78 ------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 ------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 7899999999999986 33446789999765322 12357999998864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.7e-18 Score=155.37 Aligned_cols=116 Identities=26% Similarity=0.294 Sum_probs=98.1
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR 95 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~ 95 (773)
.|..++++.|+ .+.|.|+|++|+||++.+ ..|.+||||++++.+ .+.||++++++.||+|||+|.|.+.
T Consensus 17 ~G~l~lsl~y~----~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~- 91 (146)
T cd04028 17 MGDIQLGLYDK----KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS- 91 (146)
T ss_pred cceEEEEEEeC----CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-
Confidence 45667887773 478999999999998864 567899999999954 3679999999999999999999998
Q ss_pred CCCceEEEEEE-eCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 96 IQSSVLEVTVK-DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 96 ~~~~~l~i~V~-d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
+....|.|+|| |.+.+ ++++||++.|+|.++..+. ....||+|.+..
T Consensus 92 l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~Wy~L~~~~ 140 (146)
T cd04028 92 PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSN-----LVIGWYKLFPTS 140 (146)
T ss_pred CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCC-----CceeEEecCCcc
Confidence 66889999999 57777 8999999999999986543 257899998764
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-18 Score=149.66 Aligned_cols=103 Identities=28% Similarity=0.452 Sum_probs=92.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeeeEE
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGR 118 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~ 118 (773)
.|.|+|++|+||+..+..+.+||||++++++++++|+++.++.||.|||+|.|.+.++..+.|.|+|+|.+. +++||+
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~ 78 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGS 78 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEE
Confidence 489999999999998888999999999999999999999999999999999999987667899999999886 889999
Q ss_pred EEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004109 119 VLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 119 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
+.++|.++..+. ....++||+|.+.
T Consensus 79 ~~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 79 LTLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEEHHHhhccc---cceeeeeEecCCC
Confidence 999999998653 3346899999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=152.97 Aligned_cols=104 Identities=18% Similarity=0.296 Sum_probs=90.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C---eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEE-eCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVF-DNC 435 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~-d~~ 435 (773)
|.|.|.|++|+||++.+ +..|.+||||++.+. + .+.||+++++++||+|||+|.|.+......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 78999999999998753 235789999999993 3 267999999999999999999999866889999999 566
Q ss_pred CCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
.++ ++++||.+.|+|+++..+.....||+|..
T Consensus 107 ~~~--------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 107 RMD--------KKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CCC--------CCceEEEEEEEcccccCCCCceeEEecCC
Confidence 554 78999999999999988888899999965
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=149.08 Aligned_cols=116 Identities=35% Similarity=0.647 Sum_probs=102.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004109 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (773)
|.|.|+|++|+||+..+..+.+||||++.+++..++|++++++.||.|||+|.|.+.+. ...+.|+|||++.. ++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 67999999999999998888999999999999889999999999999999999998764 57899999999987 99999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC-CceeeEEEEEEEE
Q 004109 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAVWM 161 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~ 161 (773)
|++.+++.++..+ ..+||+|.+..+ .+..|+|.+++.+
T Consensus 80 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNG-------ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCC-------CceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999998643 358999987653 3468999998754
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=146.99 Aligned_cols=102 Identities=17% Similarity=0.214 Sum_probs=86.8
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC----eeeeeeeccCCCCCccccEEEEEEeC---CCceEEEE
Q 004109 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ----KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIG 430 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~----~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~ 430 (773)
.+..+.|.|.|++|+||+ . + |.+||||++.+.. .+.+|+++++|+||+|||+|.|.|.. +...|.|.
T Consensus 10 ~~~~~~L~V~vikA~~L~-~---~--g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~ 83 (118)
T cd08677 10 DKQKAELHVNILEAENIS-V---D--AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLT 83 (118)
T ss_pred cCcCCEEEEEEEEecCCC-C---C--CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEE
Confidence 455689999999999998 2 2 4599999999953 46799999999999999999999874 36789999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004109 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
|||.|.++ ++++||++.++++++..+....+|..|
T Consensus 84 V~d~Drfs--------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 84 LRCCDRFS--------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEeCCCCC--------CCceEEEEEEccccccCCccccchhcC
Confidence 99999987 899999999999988666666677653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=151.80 Aligned_cols=117 Identities=28% Similarity=0.508 Sum_probs=101.1
Q ss_pred ceEEEEEEEccCCCCCccCC---CCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKD---GRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHL 437 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~---~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~ 437 (773)
|.|+|.|++|+||+..+... ..|.+||||++.++++.++|++++++.||.|||.|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 67999999999999875321 14679999999999999999999999999999999999986 478999999999864
Q ss_pred CCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 438 HGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+|++||++.++++++..+.....||+|.. ...|+|+++++|
T Consensus 81 ---------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~------~~~G~~~~~~~~ 121 (121)
T cd08391 81 ---------KDDFLGRLSIDLGSVEKKGFIDEWLPLED------VKSGRLHLKLEW 121 (121)
T ss_pred ---------CCCcEEEEEEEHHHhcccCccceEEECcC------CCCceEEEEEeC
Confidence 58899999999999988877889999964 245999998875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=152.91 Aligned_cols=122 Identities=32% Similarity=0.530 Sum_probs=103.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-------KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-------~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~ 111 (773)
.|+|+|++|+||+..+..+.+||||++.+.++ +.+|++++++.||.|||+|.|.+... ...|.|+|||.+..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 38999999999999998889999999999764 46899999999999999999998653 56799999999988
Q ss_pred -CCeeeEEEEEEcCccCCCCCCC-CCCcCeEEEeeeCC-CCceeeEEEEEEEE
Q 004109 112 -KDDFMGRVLFDLNEIPKRVPPD-SPLAPQWYRLEDRK-GDKVRGELMLAVWM 161 (773)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~-~~~~~G~i~l~~~~ 161 (773)
++++||++.+++.++..+.+.+ .....+||+|+... ..+..|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8999999999999999764432 34567999999764 23468999999865
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=152.23 Aligned_cols=103 Identities=22% Similarity=0.353 Sum_probs=89.4
Q ss_pred cceEEEEEEEccCCCCCccCCC-CCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeC---CCceEEEEE
Q 004109 361 IGVLELGILNAQGLMPMKTKDG-RGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGV 431 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v 431 (773)
.+.|.|.|++|+||+++ +. .|.+||||++.+.+ ...||+++++++||.|||.|.|++.. ....|.|+|
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 14 LRELHVHVIQCQDLAAA---DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred CCEEEEEEEEeCCCCCc---CCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 47999999999999987 44 37899999999842 34799999999999999999999874 256899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
||++.++ ++++||.+.|+|.++..++....||+|.
T Consensus 91 ~d~~~~~--------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLG--------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCC--------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 9998876 7899999999999998877778999973
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=151.75 Aligned_cols=114 Identities=23% Similarity=0.316 Sum_probs=96.2
Q ss_pred CcceeeeecccCceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--
Q 004109 24 GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDV-TGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR-- 95 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~-- 95 (773)
...++++|+ +..+.|.|+|++|+||+..+. .+.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 3 ~i~~sl~y~--~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~ 80 (125)
T cd04029 3 EILFSLSYD--YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ 80 (125)
T ss_pred EEEEEEEEE--CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH
Confidence 356777775 666799999999999998765 47899999999953 35789999999999999999999853
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004109 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
+....|.|+|||++.. ++++||++.++|.++..+. ....||+|.
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~w~~l~ 125 (125)
T cd04029 81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDS-----QHEECLPLH 125 (125)
T ss_pred hCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccC-----CcccEEECc
Confidence 4567899999999988 9999999999999998653 367899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=150.68 Aligned_cols=105 Identities=16% Similarity=0.258 Sum_probs=90.8
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CeeeeeeeccCCCCCccccEEEEEEeC---CCceEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~ 430 (773)
+..+.|.|.|++|+||++.+. ..|.+||||++.+. ....||+++++++||.|||+|.|.+.. ....|.|.
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~--~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDE--AKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred CCCCeEEEEEEEecCCCccCC--CCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 444899999999999987632 25789999999884 235799999999999999999999875 25689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004109 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
|||++.++ ++++||.+.|++.++......+.||||
T Consensus 90 V~d~~~~~--------~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFG--------RNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCC--------CCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999876 889999999999999988889999998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-17 Score=148.86 Aligned_cols=118 Identities=20% Similarity=0.363 Sum_probs=98.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCe
Q 004109 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDD 114 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~ 114 (773)
...|+|+|++|+||+.. +.+||||+|.+++. ..+|++. ++.||.|||+|.|.+.+.....+.|.|||.+.. +|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 34799999999999874 47899999999884 4688874 689999999999987554446799999999988 999
Q ss_pred eeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC--CCceeeEEEEEEEEec
Q 004109 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK--GDKVRGELMLAVWMGT 163 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~~~~~~ 163 (773)
+||.+.++|.++..+. ....||+|.... +.+..|+|+++++|..
T Consensus 79 ~iG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 79 EIAEVTVQLSKLQNGQ-----ETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred eEEEEEEEHhHccCCC-----cccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999999999987643 357899998865 3456799999998864
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-17 Score=149.54 Aligned_cols=116 Identities=35% Similarity=0.562 Sum_probs=100.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (773)
.|+|+|++|++|+..+..+.+||||++++++++.+|++++++.||.|||+|.|.+.......|.|+|||++.. ++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 3899999999999998888999999999999999999999999999999999999766567899999999988 899999
Q ss_pred EEEEEcCccCCCCCCCCCCcCeEEEeeeCCC-----CceeeEEEEEE
Q 004109 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-----DKVRGELMLAV 159 (773)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-----~~~~G~i~l~~ 159 (773)
.+.++|.++.... ....||.|..... .+..|.|.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAK-----QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCC-----CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999997542 2468999986431 23579988875
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=149.10 Aligned_cols=101 Identities=31% Similarity=0.456 Sum_probs=86.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeccCCCCCCeeecEEEEEecC---CCCceEEEEEEeCC
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------YKGTTRHFEKKTNPEWNQVFAFSKDR---IQSSVLEVTVKDKD 109 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-------~~~~T~~~~~~~nP~WnE~f~f~v~~---~~~~~l~i~V~d~~ 109 (773)
|+|+|++|+||+..+ .|.+||||+|.+-+ ++++|+++.++.||+|||+|.|.+.. +....|.|.|||++
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 899999999999887 58999999999832 35689999999999999999999853 34567999999998
Q ss_pred CC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004109 110 FV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 110 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
.. ++++||++.+++.++..+. ....|++|...
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~-----~~~~w~~L~~~ 113 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAG-----SCACWLPLGRR 113 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCC-----cEEEEEECcCc
Confidence 77 7999999999999998653 35689999765
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-17 Score=150.86 Aligned_cols=122 Identities=27% Similarity=0.454 Sum_probs=100.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCC---------CCceEEEEEEeC
Q 004109 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI---------QSSVLEVTVKDK 108 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~---------~~~~l~i~V~d~ 108 (773)
++|+|+|++|++|+..|..|.+||||++.+++++++|++++++.||.|||+|.|.+..+ ....+.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 47999999999999999999999999999999999999999999999999999975322 125799999999
Q ss_pred CCC-CCeeeEEEEE-EcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004109 109 DFV-KDDFMGRVLF-DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 109 ~~~-~d~~lG~~~i-~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
+.. +|++||++.+ ++..+... ......++|++|.... ...|+|++++.+..
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~--~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGG--QSAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCC--CchhheeEEeEEEE
Confidence 988 8999999997 44444321 1245678999998543 35799999987753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=148.99 Aligned_cols=113 Identities=32% Similarity=0.523 Sum_probs=98.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (773)
|.|+|++|++|+..+..+.+||||++.+++ ++++|++++++.||+|||+|.|.+.......|.|+|||.+..+|++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 789999999999988888999999999964 67899999999999999999999876556789999999988789999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEE
Q 004109 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (773)
|++.+++.++..+. ....|++|..+. .|+|++.+.+
T Consensus 82 G~~~~~l~~l~~g~-----~~~~~~~L~~~~----~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGE-----KVRVTFSLNPQG----KEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCC-----cEEEEEECCCCC----CceEEEEEEe
Confidence 99999999998653 367899998652 5888887754
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-17 Score=147.81 Aligned_cols=115 Identities=24% Similarity=0.418 Sum_probs=97.7
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004109 40 LYVRVVKAKDLPPKD-VTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (773)
Q Consensus 40 L~V~v~~a~~L~~~d-~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (773)
|.|+|++|+||+..+ ..|.+||||++.++++ .++|+++++|.||.|||+|.|.+.+. ...|.|.|||.+.+ +|++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 689999999999874 4578999999999875 68999999999999999999999753 47899999999998 99999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCC-CCceeeEEEEEEE
Q 004109 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVW 160 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~ 160 (773)
|.+.++++++..+. ....||+|.... ..+..|+|++++.
T Consensus 81 G~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 81 GKVAIKKEDLHKYY-----GKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEHHHccCCC-----CcEeeEEEEccCCCCcccEEEEEEEE
Confidence 99999999998643 357899998753 2235799999864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=152.25 Aligned_cols=119 Identities=27% Similarity=0.413 Sum_probs=100.2
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-------eeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCC
Q 004109 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-------WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNC 435 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~ 435 (773)
.|+|+|++|+||+.. +..|.+||||++.+++. ..+|++++++.||.|||+|.|.+......|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~---d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKK---DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCcc---cCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC
Confidence 378999999999877 45578999999999764 47999999999999999999999776778999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEecCccccCCe------EEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRV------YTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
.++ ++++||++.++++++..+.. ...||+|......| +..|+|++++.|
T Consensus 78 ~~~--------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 78 RLT--------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCC--------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 875 78999999999999876543 35899997644333 346999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=150.76 Aligned_cols=118 Identities=25% Similarity=0.405 Sum_probs=99.7
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCC
Q 004109 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~ 441 (773)
+|+|.|++|++|+.+ +..+.+||||++.+++...+|++++++.||.|||+|.|.+.+. ...|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~---d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPK---DRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCC---CCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 488999999999887 4457899999999999999999999999999999999999875 578999999998875
Q ss_pred CCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCC---cccccEEEEEE
Q 004109 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNG---VKKMGEIHLAV 491 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g---~~~~G~v~l~~ 491 (773)
++++||.+.++++++..+.....||.|....... .+..|.|++.+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 75 -----KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred -----CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 7899999999999998776678899997533221 12368887765
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=147.74 Aligned_cols=106 Identities=25% Similarity=0.414 Sum_probs=92.7
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCC----CCceEEEEEEeCCC
Q 004109 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI----QSSVLEVTVKDKDF 110 (773)
Q Consensus 35 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~----~~~~l~i~V~d~~~ 110 (773)
++.+.|+|+|++|++|+ .+.+||||++++++++++|++++++.||.|||+|.|.+... ....|.|+|||.+.
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 35678999999999998 47899999999999999999999999999999999997432 35689999999998
Q ss_pred C-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004109 111 V-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 111 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
. ++++||++.++|+++..+. +++...+|++|.++
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~--~~~~~~~w~~L~~~ 111 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQP--DHAFLRKWLLLTDP 111 (111)
T ss_pred cccCCccEEEEECCccccCCC--CCcceEEEEEeeCc
Confidence 8 8999999999999998653 35678999999763
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=149.43 Aligned_cols=114 Identities=35% Similarity=0.609 Sum_probs=99.5
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC
Q 004109 38 QYLYVRVVKAKDLPPKDV------TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~------~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~ 111 (773)
|+|+|+|++|+||+..+. .+.+||||+++++++.++|++++++.||.|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998774 36899999999999999999999999999999999999766678999999999887
Q ss_pred CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEE
Q 004109 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVW 160 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~ 160 (773)
++++||.+.+++.++..+. ....||+|.+. ..|+|++.+.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~----~~G~~~~~~~ 120 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKG-----FIDEWLPLEDV----KSGRLHLKLE 120 (121)
T ss_pred CCCcEEEEEEEHHHhcccC-----ccceEEECcCC----CCceEEEEEe
Confidence 8899999999999998542 36799999864 2588888763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-17 Score=147.74 Aligned_cols=118 Identities=20% Similarity=0.304 Sum_probs=101.5
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004109 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (773)
..+|+|+|++|++|...+..|.+||||++.+++++++|++++++.||+|||.|.|.+.+. ...|.|+|||++..+|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCce
Confidence 468999999999999998889999999999999999999999999999999999988654 6789999999988889999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCC---CCceeeEEEEEEEEe
Q 004109 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK---GDKVRGELMLAVWMG 162 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~---~~~~~G~i~l~~~~~ 162 (773)
|.+++++.++.. ...+|++|.... ..+..|+|.+++.+.
T Consensus 81 G~~~~~l~~~~~-------~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 81 GQATLSADPNDS-------QTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEEEEecccCCC-------cCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 999999987542 245889997542 335679999998664
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-17 Score=148.23 Aligned_cols=117 Identities=29% Similarity=0.463 Sum_probs=99.6
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCee-eeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 004109 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 442 (773)
|.|.|++|+||+.+ +..|.+||||++.++++. .||+++++++||.|||.|.|.+......|.|+|||++.++
T Consensus 2 l~v~vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAK---DITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCC---CCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 78999999999987 445789999999998764 6999999999999999999999877789999999999876
Q ss_pred CCCCCCCccEEEEEecCccccC-CeEEeeEEeEeecCCCcccccEEEEEEE
Q 004109 443 AGGARDSRIGKVRIRLSTLETD-RVYTHSYPLLVLYPNGVKKMGEIHLAVR 492 (773)
Q Consensus 443 ~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~v~l~~~ 492 (773)
+|++||++.+++.++..+ .....|++|...+..+ +..|+|++.++
T Consensus 75 ----~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 75 ----RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred ----CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 899999999999888653 3467899997654333 34699988875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-17 Score=148.31 Aligned_cols=112 Identities=23% Similarity=0.338 Sum_probs=96.8
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC---eeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 004109 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHG 439 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~ 439 (773)
|.|.|++|+||+.. +..+.+||||++.+++ ...||++++++.||.|||+|.|.+..+ ...|.|+|||+|.+
T Consensus 2 L~V~vi~a~~L~~~---~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKG---DLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCcc---CCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--
Confidence 78999999999976 4457899999999863 568999999999999999999998865 56799999999875
Q ss_pred CCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+|++||++.++++++..+.....|++|.. +..|++++++.+
T Consensus 77 -------~~~~iG~~~~~l~~l~~g~~~~~~~~L~~------~~~g~l~~~~~~ 117 (119)
T cd04036 77 -------MDDHLGTVLFDVSKLKLGEKVRVTFSLNP------QGKEELEVEFLL 117 (119)
T ss_pred -------CCcccEEEEEEHHHCCCCCcEEEEEECCC------CCCceEEEEEEe
Confidence 48899999999999999999999999953 235888888765
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-17 Score=148.92 Aligned_cols=112 Identities=20% Similarity=0.366 Sum_probs=95.4
Q ss_pred ceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeccCCCCCCeeecEEEEEec--CCC
Q 004109 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHFEKKTNPEWNQVFAFSKD--RIQ 97 (773)
Q Consensus 26 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~------~~~~T~~~~~~~nP~WnE~f~f~v~--~~~ 97 (773)
.+++.|+ +..+.|.|+|++|+||+..+..+.+||||++.+-+ .+++|++.+++.||+|||+|.|++. ++.
T Consensus 4 ~~sL~Y~--~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 4 QIGLRYD--SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred EEEEEEC--CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 4566666 66679999999999999988888999999999853 3688999999999999999999984 456
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004109 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
...|.|.|||.+.. ++++||.+.|+|.++.... .....||+|
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~----~~~~~Wy~l 124 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSE----EMSTKWYNL 124 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCC----ccccccccC
Confidence 78999999999988 8999999999999996542 236789876
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.3e-17 Score=147.29 Aligned_cols=119 Identities=22% Similarity=0.296 Sum_probs=99.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 441 (773)
+.++|+|++|++|... +..|.+||||++.++++.++|++++++.||.|||.|.|.+.++...|.|+|||++.+
T Consensus 3 ~~~~V~v~~A~~L~~~---d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~---- 75 (126)
T cd04046 3 VVTQVHVHSAEGLSKQ---DSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL---- 75 (126)
T ss_pred EEEEEEEEeCcCCCCC---CCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC----
Confidence 6899999999999876 456889999999999999999999999999999999999988888999999999875
Q ss_pred CCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecC-CCcccccEEEEEEEEe
Q 004109 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYP-NGVKKMGEIHLAVRFT 494 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~-~g~~~~G~v~l~~~~~ 494 (773)
+|++||++.+++..+..+. ..+|+|..... ...+..|+|.+++.+.
T Consensus 76 -----~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 76 -----CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred -----CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 4799999999998865433 57889853221 1223469999988763
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-17 Score=153.32 Aligned_cols=119 Identities=27% Similarity=0.458 Sum_probs=101.1
Q ss_pred eeEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eeeeccCCCCCCee
Q 004109 37 MQYLYVRVVKAKDLPPKD------------------------------VTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEW 85 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d------------------------------~~~~~dpyv~v~~~~~~-~~T~~~~~~~nP~W 85 (773)
.|.|.|+|++|++|+.+| ..|++||||+|.+++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 378999999999999887 34678999999999854 69999999999999
Q ss_pred ecEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC--ceeeEEEEEEEE
Q 004109 86 NQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD--KVRGELMLAVWM 161 (773)
Q Consensus 86 nE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~~~~ 161 (773)
||+|.|.+... .+.|.|.|||.+.+++++||++.+++.++..+. ...+||+|.+..+. +..|.|++++.|
T Consensus 86 nE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~-----~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGE-----PVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCC-----CcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999998654 467999999999887899999999999998542 36799999886543 345899999876
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-17 Score=148.38 Aligned_cols=117 Identities=26% Similarity=0.426 Sum_probs=100.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN--YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~--~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (773)
|.|+|++|+||+. ..+.+||||++.+++ ++++|+++.++.||+|||+|.|.+.. ....|.|+|||.+.. +|++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 6799999999987 578999999999984 67899999999999999999999864 367899999999998 89999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC--CceeeEEEEEEEEecc
Q 004109 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAVWMGTQ 164 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~~~~~~ 164 (773)
|++.+++.++..+.. ...|++|....+ ....|+|.+.+.|...
T Consensus 78 G~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 78 GLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 999999999986532 468999987642 4568999999988653
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-17 Score=149.02 Aligned_cols=115 Identities=31% Similarity=0.470 Sum_probs=97.6
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecC--CC
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDR--IQ 97 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~--~~ 97 (773)
|...+++.|+. ..+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+.. ..
T Consensus 3 G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~ 80 (124)
T cd08385 3 GKLQFSLDYDF--QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELG 80 (124)
T ss_pred cEEEEEEEEeC--CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhC
Confidence 45567777774 4468999999999999998888999999999864 46799999999999999999999853 34
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004109 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
...|.|+|||.+.+ ++++||++.++|.++..+ ....+|++|.
T Consensus 81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~-----~~~~~W~~l~ 123 (124)
T cd08385 81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLG-----HVTEEWRDLE 123 (124)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEEecCcccCC-----CCcceEEEcc
Confidence 57899999999988 899999999999998764 2467999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-17 Score=148.93 Aligned_cols=113 Identities=27% Similarity=0.531 Sum_probs=97.0
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecC--CCCc
Q 004109 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDR--IQSS 99 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~--~~~~ 99 (773)
..+++.|+ +..+.|.|+|++|+||+..+..+.+||||++.+.. .+++|++++++.||+|||+|.|.+.. +...
T Consensus 5 l~~sl~y~--~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~ 82 (124)
T cd08387 5 LHFSLEYD--KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKR 82 (124)
T ss_pred EEEEEEEC--CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCC
Confidence 45666665 66789999999999999999889999999999942 56899999999999999999999853 3456
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004109 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
.|.|+|||++.. ++++||++.++|.++..+. ....||+|+
T Consensus 83 ~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08387 83 TLEVLLYDFDQFSRDECIGVVELPLAEVDLSE-----KLDLWRKIQ 123 (124)
T ss_pred EEEEEEEECCCCCCCceeEEEEEecccccCCC-----CcceEEECc
Confidence 899999999988 8999999999999998653 357899986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=148.88 Aligned_cols=117 Identities=25% Similarity=0.343 Sum_probs=96.2
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEE-ec--C
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFS-KD--R 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~-v~--~ 95 (773)
|..++++.|+.. .+.|.|+|++|+||+..+.. +.+||||++.+.+ ++.||++++++.||+|||+|.|. +. +
T Consensus 3 G~l~~~l~y~~~--~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~ 80 (128)
T cd08388 3 GTLFFSLRYNSE--KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ 80 (128)
T ss_pred eEEEEEEEEECC--CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence 556777777754 46999999999999998875 8999999999963 46799999999999999999993 43 3
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004109 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
.....|.|+|||++.. ++++||++.++|.++..... .....|++|+
T Consensus 81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~---~~~~~~~~~~ 127 (128)
T cd08388 81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNE---GELLVSREIQ 127 (128)
T ss_pred hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCC---ceEEEEEecc
Confidence 3456799999999988 99999999999999976521 2367888875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.4e-17 Score=148.07 Aligned_cols=105 Identities=21% Similarity=0.394 Sum_probs=91.9
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---CeeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVF 432 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~ 432 (773)
+..|.|.|.|++|+||+.. +..|.+||||++.++ ....||++++++.||.|||.|.|.+... ...|.|+||
T Consensus 13 ~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 13 KDMGILNVKLIQARNLQPR---DFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred CCCCEEEEEEEEeeCCCCC---CCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 3458999999999999987 455789999999983 3468999999999999999999998753 568999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004109 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
|++.++ ++++||.+.|+++++..+...+.||+|.
T Consensus 90 d~~~~~--------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 90 DFDQFS--------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ECCCCC--------CCceeEEEEEecccccCCCCcceEEECc
Confidence 998875 7899999999999998888889999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.4e-17 Score=145.76 Aligned_cols=116 Identities=32% Similarity=0.514 Sum_probs=98.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (773)
|.|+|++|++|+..+..|.+||||++.+++. ..+|++++++.||.|||.|.|.+... ...|.|+|||.+.. +|++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEEE
Confidence 7899999999999998999999999999885 47999999999999999999998653 47899999999988 899999
Q ss_pred EEEEEcCccCCCCCCCCCCcCeEEEeeeCC-CCceeeEEEEEEE
Q 004109 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVW 160 (773)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~ 160 (773)
++.+++.++... ......|++|.... +....|+|++.+.
T Consensus 81 ~~~~~~~~~~~~----~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAH----PRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccC----CCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 999999888643 12357899998754 3346799988764
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-17 Score=151.75 Aligned_cols=102 Identities=28% Similarity=0.482 Sum_probs=87.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec---------------CCCCc
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD---------------RIQSS 99 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~---------------~~~~~ 99 (773)
|.|+|++|+||+. ..|.+||||+|.+.+ ++++|++++++.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 8999999999998 468999999999976 5789999999999999999999984 22346
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
.|.|.|||++.. +|++||++.|++.++..+. .....||+|..+.
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~----~~~~~W~~L~~~~ 124 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA----GSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccC----CcCcceeecCCcc
Confidence 799999999988 9999999999999988651 2357899998765
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.72 E-value=8e-17 Score=146.62 Aligned_cols=104 Identities=20% Similarity=0.228 Sum_probs=88.1
Q ss_pred CccceEEEEEEEccCCCCCccCCC-CCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC---CceEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDG-RGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITI 429 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 429 (773)
+..+.|.|.|++|+||+++ +. .|.+||||++.+.+ .+.||+++++++||+|||+|.|++... ...|.|
T Consensus 12 ~~~~~L~V~V~~a~nL~~~---d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v 88 (128)
T cd08392 12 FRTSCLEITIKACRNLAYG---DEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQV 88 (128)
T ss_pred CCCCEEEEEEEecCCCCcc---CCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEE
Confidence 3347999999999999987 44 38899999999842 367999999999999999999998653 569999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecCccccC---CeEEeeEEe
Q 004109 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD---RVYTHSYPL 473 (773)
Q Consensus 430 ~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L 473 (773)
.|||.+.++ ++++||.+.|+|+++... .....||+|
T Consensus 89 ~V~~~~~~~--------~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 89 SVWHSRTLK--------RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEEeCCCCc--------CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999998765 789999999999998543 467789997
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.6e-17 Score=145.33 Aligned_cols=118 Identities=27% Similarity=0.444 Sum_probs=100.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCcee
Q 004109 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVL 280 (773)
Q Consensus 201 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~i 280 (773)
+|+|+|++|++|+.+ .+||||++.+++++.+|+++++ +.||.|||+|.|.+..+....|.|+|||++.. ++++|
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~l 74 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFL 74 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCC-CCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCcee
Confidence 388999999999887 5899999999999999999877 99999999999998776778999999999876 78999
Q ss_pred EEEEEeccccccccC-CCCCCceEEEcccCcccccccccCCceeeEEEEEEEE
Q 004109 281 GKCMIPLQYVDKRLD-HKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICL 332 (773)
Q Consensus 281 G~~~i~L~~l~~~~~-~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~ 332 (773)
|++.++++++..+.. +.....+||+|.+... .+..|+|++.+.+
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~--------~~~~G~i~l~~~~ 119 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG--------GRVGGELMLAVWF 119 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCCcceEEccCCCC--------CccceEEEEEEEe
Confidence 999999999865422 2344679999988621 3568999998875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-17 Score=144.50 Aligned_cols=100 Identities=18% Similarity=0.273 Sum_probs=86.3
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-C----C--eeeeeeeccCCCCCccccEEEEEEeCC----CceEEEEE
Q 004109 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-G----Q--KWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGV 431 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-~----~--~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v 431 (773)
.|+|.|++|+||+.. + .|.+||||+|.+ | . ++.+|+++.+++||+|||.|.|.+... ...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~---d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQ---T-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCcc---c-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 488999999999875 3 388999999997 3 2 346899999999999999999999732 45799999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
||+|..+ +|++||++.++++++..++....|++|.
T Consensus 77 ~D~d~~~--------~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 77 KDYCFAR--------DDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred EEecccC--------CCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 9998654 7899999999999999998889999994
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-17 Score=143.00 Aligned_cols=96 Identities=20% Similarity=0.301 Sum_probs=83.9
Q ss_pred ceEEEEEEEccCCCCCccCC-CCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC--CceEEEEEEeCCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKD-GRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDNCHLH 438 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~~~~~ 438 (773)
|.|.|+|++|+||+..+... .++.+||||+++++++.+||+++++++||+|||.|.|.+.+. +..|.|+|||+|.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999875421 224689999999999999999999999999999999999763 458999999999876
Q ss_pred CCCCCCCCCCCccEEEEEecCccccCC
Q 004109 439 GGDKAGGARDSRIGKVRIRLSTLETDR 465 (773)
Q Consensus 439 ~~~~~~~~~d~~lG~~~i~l~~l~~~~ 465 (773)
+|++||++.++|+++..+.
T Consensus 81 --------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 --------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred --------CCcceEEEEEEHHHHHhhC
Confidence 8999999999999997654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.7e-17 Score=142.92 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=85.9
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 441 (773)
+.|.|.|++|++|+.. +..||||++++|+++.+|++++++ ||.|||.|.|.+.++...|.|+|||+|.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~------~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~---- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAP------DKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI---- 70 (127)
T ss_pred ceEEEEEEEeeCCCCC------CCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc----
Confidence 6899999999999643 456999999999999999999884 99999999999988877899999999865
Q ss_pred CCCCCCCCccEEEEEecCccccCCeE--EeeEEeEe
Q 004109 442 KAGGARDSRIGKVRIRLSTLETDRVY--THSYPLLV 475 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~ 475 (773)
+|++||++.|+|+++..+... ..||+|..
T Consensus 71 -----~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 71 -----WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred -----CCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 699999999999998755444 78999963
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.2e-17 Score=146.24 Aligned_cols=115 Identities=23% Similarity=0.376 Sum_probs=96.8
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEE-ec--C
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFS-KD--R 95 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~-v~--~ 95 (773)
+|...+++.|+ +..+.|.|+|++|+||+..+..+.+||||++.+.+ ++++|+++++ .||+|||+|.|. +. +
T Consensus 2 ~G~l~~sl~Y~--~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~ 78 (124)
T cd08389 2 CGDLDVAFEYD--PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEE 78 (124)
T ss_pred CEEEEEEEEEC--CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHH
Confidence 35567777777 44568999999999999999888999999988743 5788998887 999999999998 53 3
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004109 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
+....|.|+|||.+.. ++++||++.|+|.++..+. ....||+|+
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~ 123 (124)
T cd08389 79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG-----ETTVWLTLE 123 (124)
T ss_pred hccCEEEEEEEECCCcccCceEEEEEEeccccCCCC-----CceEEEeCC
Confidence 4578899999999988 8999999999999996542 467899986
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.7e-17 Score=143.82 Aligned_cols=104 Identities=36% Similarity=0.575 Sum_probs=91.1
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeeccCCCCCCee-ecEEEEEecC--CCCceEEEEEEeCCCC-CCe
Q 004109 40 LYVRVVKAKDLPPKDV-TGSCDPYVEVKMGNYKGTTRHFEKKTNPEW-NQVFAFSKDR--IQSSVLEVTVKDKDFV-KDD 114 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~-~~~~dpyv~v~~~~~~~~T~~~~~~~nP~W-nE~f~f~v~~--~~~~~l~i~V~d~~~~-~d~ 114 (773)
|.|+|++|+||+..+. .+.+||||++.+++++++|++++++.||.| ||+|.|.+.. +....|.|+|||.+.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999998874 688999999999999999999999999999 9999999854 3357899999999988 889
Q ss_pred eeEEEEEEcCccCCCCCCCCCCcCeEEEeee
Q 004109 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (773)
+||++.+++.++.... +......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~--~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKD--SVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccC--CccccCCeEEccc
Confidence 9999999999998742 1334789999976
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=9e-17 Score=146.79 Aligned_cols=121 Identities=31% Similarity=0.416 Sum_probs=100.3
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC--eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 004109 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ--KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~ 438 (773)
+|.|+|.|++|+||+..+ ...+.+||||++.+++ ...+|+++.++.||.|||.|.|.+....+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~--~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSD--IIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCccc--ccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 489999999999998542 1345799999999987 789999999999999999999999866889999999998765
Q ss_pred CCCCCCCCCCCccEEEEEecCccccCCeEEe-eEEeEeecCCCcccccEEEEEEEEee
Q 004109 439 GGDKAGGARDSRIGKVRIRLSTLETDRVYTH-SYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 439 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
+|++||++.+++.++..+..... ++++. ..| +..|+|++.++|.|
T Consensus 79 --------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~---~~~-k~~G~i~~~l~~~p 124 (124)
T cd04044 79 --------KDKLIGTAEFDLSSLLQNPEQENLTKNLL---RNG-KPVGELNYDLRFFP 124 (124)
T ss_pred --------CCceeEEEEEEHHHhccCccccCcchhhh---cCC-ccceEEEEEEEeCC
Confidence 78999999999999987766653 44443 123 45699999999843
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=146.65 Aligned_cols=115 Identities=30% Similarity=0.494 Sum_probs=97.2
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec--C
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--R 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~--~ 95 (773)
|..++++.|+ ...+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+. +
T Consensus 3 G~l~~~l~y~--~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 3 GRIQLTIRYS--SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred eEEEEEEEEe--CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 4456777766 55679999999999999999889999999999963 5789999999999999999999984 3
Q ss_pred CCCceEEEEEEeCCCC---CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004109 96 IQSSVLEVTVKDKDFV---KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
+....|.|.|||.+.. ++++||++.++|.++..+. ....||+|+
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccC-----CccceEECc
Confidence 4457899999999873 7999999999999996542 357899984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-17 Score=141.93 Aligned_cols=94 Identities=22% Similarity=0.340 Sum_probs=82.9
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCC-CCceEEEEEEeCCCC-
Q 004109 38 QYLYVRVVKAKDLPPKDVT----GSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI-QSSVLEVTVKDKDFV- 111 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~----~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~-~~~~l~i~V~d~~~~- 111 (773)
|+|.|+|++|++|+..+.. +.+||||++.++++++||++++++.||+|||+|.|.+.+. ....|.|+|||++..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999987632 3589999999999999999999999999999999998543 345899999999988
Q ss_pred CCeeeEEEEEEcCccCCCCC
Q 004109 112 KDDFMGRVLFDLNEIPKRVP 131 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~ 131 (773)
+|++||++.++|.+|..+.+
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCcceEEEEEEHHHHHhhCC
Confidence 99999999999999987643
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.5e-17 Score=146.83 Aligned_cols=113 Identities=38% Similarity=0.620 Sum_probs=93.7
Q ss_pred CcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec---C
Q 004109 24 GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD---R 95 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~---~ 95 (773)
...+++.|+ +..+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+. +
T Consensus 4 ~l~~~l~~~--~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 81 (125)
T cd04031 4 RIQIQLWYD--KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81 (125)
T ss_pred EEEEEEEEe--CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence 345555655 55679999999999999998888999999999975 5789999999999999999999863 2
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004109 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
+....|.|+|||.+.. ++++||++.++|.+...+ ....||+|+
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~------~~~~W~~L~ 125 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADALLD------DEPHWYPLQ 125 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEeccccccc------CCcceEECc
Confidence 3467899999999988 899999999999983322 135899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=144.66 Aligned_cols=114 Identities=27% Similarity=0.400 Sum_probs=100.7
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCC--CCceEEEEEEeCCCC-CCeeeEEEE
Q 004109 44 VVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI--QSSVLEVTVKDKDFV-KDDFMGRVL 120 (773)
Q Consensus 44 v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~--~~~~l~i~V~d~~~~-~d~~lG~~~ 120 (773)
|++|++|+. ..+.+||||++.+++.+++|++++++.||+|||+|.|.+... ....|.|+|||++.. ++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999998 578999999999999999999999999999999999999653 468899999999988 899999999
Q ss_pred EEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEecc
Q 004109 121 FDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (773)
Q Consensus 121 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (773)
++++++..+. ....|++|.+..+....|+|+++++|.+.
T Consensus 80 ~~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 80 VSLQDLVSEG-----LLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEhhHcccCC-----ceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 9999998643 35789999887766667999999999864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=144.89 Aligned_cols=124 Identities=23% Similarity=0.422 Sum_probs=102.7
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCee-eeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 004109 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG 439 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~ 439 (773)
...|.|.|++|+||+++ .||||.+.+++.. .||+++.++.||.|||.|.|++..+...++|.||+.+...
T Consensus 10 ~~sL~v~V~EAk~Lp~~--------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~- 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK--------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK- 80 (146)
T ss_pred EEEEEEEEEEccCCCCc--------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc-
Confidence 36899999999999874 3799999999988 5999999999999999999988777788999998654321
Q ss_pred CCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCC-------cccccEEEEEEEEeec
Q 004109 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNG-------VKKMGEIHLAVRFTCS 496 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~v~l~~~~~~~ 496 (773)
+ +..++++||++.|++.++..+.....||||....... ....+.|+++++|.+.
T Consensus 81 ~---~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 K---KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred c---cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 0 1125789999999999999999999999998776543 2335789999999664
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.1e-17 Score=144.83 Aligned_cols=102 Identities=25% Similarity=0.477 Sum_probs=86.2
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCC-CCceEEEEEEeCC
Q 004109 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRI-QSSVLEVTVKDKD 109 (773)
Q Consensus 36 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~-~~~~l~i~V~d~~ 109 (773)
..+.|.|+|++|+||++.+ .|.+||||++.+.+ .+++|++++++.||+|||+|.|.+... ....|.|+|||.+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 3468999999999999988 78999999999975 356899999999999999999998431 2356899999998
Q ss_pred CC--CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004109 110 FV--KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 110 ~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
.. ++++||.+.|+|.++..+. ...+||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~-----~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQK-----EISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCc-----cccceEeC
Confidence 76 4799999999999997442 35789986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=142.52 Aligned_cols=107 Identities=26% Similarity=0.372 Sum_probs=93.4
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeecccCCCCCccccceEEEEeeCCC----CCeEEEEEEEcc
Q 004109 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF----EEHLILTVEDRV 272 (773)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~----~~~l~i~V~d~~ 272 (773)
|+.+.|+|+|++|++|. ++.+||||++++++++++|+++++ +.||.|||+|.|.+..+. +..|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 46788999999999998 467999999999999999999876 999999999999986543 468999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceEEEcccC
Q 004109 273 APNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (773)
Q Consensus 273 ~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~ 309 (773)
..+++++||++.++|+++... +.+....+|++|.++
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~-~~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ-PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCC-CCCcceEEEEEeeCc
Confidence 888899999999999999753 456778999999764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=144.50 Aligned_cols=123 Identities=27% Similarity=0.417 Sum_probs=97.7
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC--
Q 004109 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG-- 440 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~-- 440 (773)
.|+|.|++|++|+.. +..|.+||||++.+++...+|+++.++.||.|||.|.|.+..+...|.|+|||+|....+
T Consensus 2 ~L~V~vi~a~~L~~~---d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAK---DKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCC---CCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 689999999999987 455789999999999999999999999999999999999987778999999999852100
Q ss_pred -CCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEE
Q 004109 441 -DKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAV 491 (773)
Q Consensus 441 -~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~ 491 (773)
.+...+++++||.+.+++.++... ...||+|.....++ ...|+|.|++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCC--CCeEEECccCCCCC-cEeEEEEEEC
Confidence 011123689999999999988644 36899997544332 2368888763
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=143.22 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=97.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-C--Cee
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMG-NYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K--DDF 115 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~-~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~--d~~ 115 (773)
|+|+|++|++|+..+..+.+||||++.++ .+.++|++++++.||.|||+|.|.+.. ...|.|+|||++.. + |++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 78999999999999888999999999997 578899999999999999999999975 67999999999887 3 589
Q ss_pred eEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC---CceeeEEEEEE
Q 004109 116 MGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG---DKVRGELMLAV 159 (773)
Q Consensus 116 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~~ 159 (773)
||++.+++.++..... ....||+|..... ....|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~----~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKD----TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCC----CccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999975432 2457999977653 34679988764
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.9e-17 Score=143.73 Aligned_cols=102 Identities=27% Similarity=0.403 Sum_probs=89.7
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCcc-ccEEEEEEeCC---CceEEEEEEeCCCCCC
Q 004109 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKW-NEQYTWEVFDP---CTVITIGVFDNCHLHG 439 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w-ne~~~f~v~~~---~~~l~v~v~d~~~~~~ 439 (773)
|.|+|++|+||+.++. ..|.+||||++.++++..||+++++++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~--~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~- 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--SSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS- 77 (110)
T ss_pred CEEEEEEEECCCcccc--CCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-
Confidence 5799999999998742 2578999999999999999999999999999 99999999863 478999999999876
Q ss_pred CCCCCCCCCCccEEEEEecCcccc---CCeEEeeEEeEe
Q 004109 440 GDKAGGARDSRIGKVRIRLSTLET---DRVYTHSYPLLV 475 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 475 (773)
++++||++.++++++.. +..+..||+|.+
T Consensus 78 -------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 -------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred -------CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 78999999999999976 456889999964
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=144.08 Aligned_cols=104 Identities=27% Similarity=0.351 Sum_probs=90.7
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC---eeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEEe
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFD 433 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d 433 (773)
..+.|.|+|++|+||+.. +..+.+||||++.+.+ ...||++++++.||.|||.|.|.+... ...|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~---d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 14 QSNQLTVGIIQAADLPAM---DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCc---cCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 347999999999999987 4457899999999843 467999999999999999999998752 5689999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004109 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
++.++ ++++||++.++++++..+....+|++|.
T Consensus 91 ~d~~~--------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 91 FDRFS--------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCC--------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 98875 7899999999999998888889999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=146.57 Aligned_cols=118 Identities=25% Similarity=0.350 Sum_probs=101.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccC-CCCCCeeecEEEEEecCCC----CceEEEEEEeCCCC-
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFE-KKTNPEWNQVFAFSKDRIQ----SSVLEVTVKDKDFV- 111 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-~~~~T~~~~-~~~nP~WnE~f~f~v~~~~----~~~l~i~V~d~~~~- 111 (773)
.|+|+|++|++|+..+..+.+||||++++++ ++++|+++. ++.||.|||+|.|.+.+.. ...|.|+|||.+..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3899999999999988889999999999998 889999985 5899999999999997653 68899999999986
Q ss_pred CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEE
Q 004109 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELML 157 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l 157 (773)
+|++||++.+++.++..+...+......||+|....| +..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g-~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG-KPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC-CcCeEEeC
Confidence 8999999999999999775433345678999998765 46788864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=143.50 Aligned_cols=113 Identities=35% Similarity=0.614 Sum_probs=97.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-------
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV------- 111 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~------- 111 (773)
.|+|+|++|++|+..|..+.+||||++.++++.++|+++.++.||.|||+|.|.+... ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 5899999999999999889999999999998899999999999999999999988654 46899999999841
Q ss_pred -----CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC-ceeeEEEEEE
Q 004109 112 -----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAV 159 (773)
Q Consensus 112 -----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~ 159 (773)
++++||.+.+++.++... ...||+|....+. ..+|+|.+++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~-------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC-------CCeEEECccCCCCCcEeEEEEEEC
Confidence 689999999999987422 4699999976543 5789999863
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=148.64 Aligned_cols=101 Identities=21% Similarity=0.280 Sum_probs=86.4
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEe---------------C
Q 004109 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVF---------------D 422 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~---------------~ 422 (773)
.|.|.|++|+||+. ..|.+||||+|.+.+ ...+|+++++++||+|||.|.|++. +
T Consensus 1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 47899999999986 237899999999966 5689999999999999999999995 1
Q ss_pred -CCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccC-CeEEeeEEeEee
Q 004109 423 -PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD-RVYTHSYPLLVL 476 (773)
Q Consensus 423 -~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~ 476 (773)
....|.|.|||++..+ +|++||++.|++..+..+ .....||+|...
T Consensus 76 ~~~~~L~i~V~d~~~~~--------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 76 AEKLELRVDLWHASMGG--------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred ccEEEEEEEEEcCCCCC--------CCceeEEEEEecccccccCCcCcceeecCCc
Confidence 1357999999998765 789999999999999887 567899999644
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=143.35 Aligned_cols=101 Identities=20% Similarity=0.346 Sum_probs=86.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDN 434 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~ 434 (773)
+.|.|.|++|+||+++ + .|.+||||++.+.+ .+.||+++.++.||.|||+|.|++... ...|.|.|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~---~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRST---N-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCC---C-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 7899999999999987 4 47899999999953 356999999999999999999998753 45799999998
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004109 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
+..+ .++++||.+.|++.++..+....+||+|
T Consensus 88 ~~~~-------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS-------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc-------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8643 1368999999999999888878999986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-16 Score=143.73 Aligned_cols=120 Identities=26% Similarity=0.339 Sum_probs=98.7
Q ss_pred eeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-C
Q 004109 37 MQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN--YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K 112 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d-~~~~~dpyv~v~~~~--~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~ 112 (773)
+|.|+|+|++|+||+..+ ..+.+||||++++++ ..++|+++.++.||.|||.|.|.+.. ..+.|.|+|||++.. +
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 478999999999999655 346799999999998 78999999999999999999999873 478999999999988 8
Q ss_pred CeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004109 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
|++||++.+++.++..+... ...|+.+.. +.+..|+|++++.|.|
T Consensus 80 d~~iG~~~~~l~~l~~~~~~----~~~~~~~~~--~~k~~G~i~~~l~~~p 124 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQ----ENLTKNLLR--NGKPVGELNYDLRFFP 124 (124)
T ss_pred CceeEEEEEEHHHhccCccc----cCcchhhhc--CCccceEEEEEEEeCC
Confidence 99999999999999865321 123444442 3345799999998753
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-16 Score=143.50 Aligned_cols=112 Identities=22% Similarity=0.408 Sum_probs=94.3
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--C
Q 004109 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--I 96 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~--~ 96 (773)
..+++.|+ ...+.|.|+|++|+||+..+ ..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+.. +
T Consensus 3 i~~~l~y~--~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l 80 (123)
T cd08521 3 IEFSLSYN--YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL 80 (123)
T ss_pred EEEEEEEe--CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence 45666675 55679999999999999888 678999999999843 46789999999999999999999853 3
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004109 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
....|.|+|||.+.. ++++||++.++|.++..+. ....||+|
T Consensus 81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~l 123 (123)
T cd08521 81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS-----QQSEWYPL 123 (123)
T ss_pred CCCEEEEEEEeCCCCcCCceeeEEEEecccccccC-----CCccEEEC
Confidence 467899999999988 8999999999999997542 35789986
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=142.64 Aligned_cols=100 Identities=31% Similarity=0.473 Sum_probs=86.7
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecCC---CCceEEEEEEeCCC
Q 004109 38 QYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRI---QSSVLEVTVKDKDF 110 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~-~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~~---~~~~l~i~V~d~~~ 110 (773)
|+|+|+|++|++|+..+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 8999999999954 467999999999999999999987542 35689999999999
Q ss_pred C-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeee
Q 004109 111 V-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (773)
Q Consensus 111 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (773)
. +|++||++.+++.++... ..|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~--------~~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED--------RNWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC--------CCCCcccc
Confidence 8 899999999999999843 46777653
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-16 Score=139.26 Aligned_cols=102 Identities=25% Similarity=0.420 Sum_probs=91.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeE
Q 004109 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLG 281 (773)
Q Consensus 202 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~iG 281 (773)
|.|+|++|++|+..+..+.+||||+++++++.++|+++++ +.||.|||.|.|.+.++..+.|.|+|+|++. +++||
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 7899999999999988899999999999999999999876 9999999999999988777899999999875 88999
Q ss_pred EEEEeccccccccCCCCCCceEEEcccC
Q 004109 282 KCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (773)
Q Consensus 282 ~~~i~L~~l~~~~~~~~~~~~w~~L~~~ 309 (773)
++.++|.++... ......+||+|.+.
T Consensus 78 ~~~i~l~~l~~~--~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKE--PDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhcc--ccceeeeeEecCCC
Confidence 999999998743 23457899999874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-16 Score=142.51 Aligned_cols=115 Identities=27% Similarity=0.456 Sum_probs=98.4
Q ss_pred eEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eeeeccCCCCCCeeecEEEEEecCCCCceEEEEEE
Q 004109 38 QYLYVRVVKAKDLPPKDVT----------GSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~----------~~~dpyv~v~~~~~~-~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~ 106 (773)
|.|+|+|++|++|...+.. +.+||||++.+++++ .+|++++++.||.|||+|.|.+.+ ...|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEEE
Confidence 6899999999999988752 579999999999854 689999999999999999999974 578999999
Q ss_pred eCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004109 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
|.+.. ++++||++.++|.++..+. ......|++|.. .|.|++.+.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~~------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRG---SGSFDLWVDLEP------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccC---CCcccEEEEccC------CcEEEEEEEEec
Confidence 99887 8899999999999998641 223679999972 489999987764
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=143.24 Aligned_cols=115 Identities=31% Similarity=0.500 Sum_probs=96.4
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeecEEEEEec---CC
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSKD---RI 96 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~---~~~~~T~~~~~~~nP~WnE~f~f~v~---~~ 96 (773)
|...++..|+ ...+.|.|+|++|+||+..+..+.+||||++.+. +++.+|++++++.||.|||+|.|.+. .+
T Consensus 3 G~l~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 3 GRIQFSVSYD--FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred cEEEEEEEEC--CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 3456666776 4556899999999999999888899999999993 36789999999999999999999742 23
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004109 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
....|.++|||++.. ++++||++.+++.++..+. ....|+.|.
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~l~ 124 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTE-----EQTFWKDLK 124 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCC-----CcceEEecC
Confidence 456899999999988 8999999999999998643 367899885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=143.69 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=90.4
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CeeeeeeeccCCCCCccccEEEEEEeCC---CceEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~ 430 (773)
+..+.|.|.|++|+||+.. +..+.+||||++.+. ....||++++++.||.|||.|.|.+... ...|.|.
T Consensus 13 ~~~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~ 89 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPC---DSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVA 89 (127)
T ss_pred CCCCEEEEEEEEEECCCCc---cCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEE
Confidence 3347999999999999987 445789999999984 3568999999999999999999998643 4789999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004109 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
|||++.+. .+++++||.+.|++.++..+.....||+|
T Consensus 90 v~~~~~~~------~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 90 VKNSKSFL------SREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EEECCccc------CCCCceEEEEEEecccccccCCccceEEC
Confidence 99998641 01689999999999999888888999997
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=147.21 Aligned_cols=95 Identities=26% Similarity=0.367 Sum_probs=82.7
Q ss_pred eEEEEEEEccCCCCCccCC-----------CCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC--CceEEE
Q 004109 363 VLELGILNAQGLMPMKTKD-----------GRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITI 429 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~-----------~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v 429 (773)
.|.|+|++|++|+.+|... ..+.+||||+|.++++..||+++++++||+|||+|.|++..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999999986421 235799999999999999999999999999999999998754 579999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCC
Q 004109 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR 465 (773)
Q Consensus 430 ~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 465 (773)
+|||+|..+ +|++||++.|+++++....
T Consensus 81 ~v~D~d~~~--------~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 81 QIRDWDRVG--------NDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEECCCCC--------CCCEEEEEEEeHHHhccCC
Confidence 999999876 7999999999999986543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-16 Score=143.36 Aligned_cols=117 Identities=22% Similarity=0.355 Sum_probs=99.2
Q ss_pred ceEEEEEEEccCCCCCccCC-------CCCCCCcEEEEEECCee-eeeeeccCCCCCccccEEEEEEeCCCceEEEEEEe
Q 004109 362 GVLELGILNAQGLMPMKTKD-------GRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFD 433 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~-------~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d 433 (773)
|.|+|.|++|+||...+... +.+.+||||++.++++. .+|++++++.||.|||+|.|.+. ....|.|.|||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d 82 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFH 82 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEe
Confidence 88999999999998764310 13679999999999866 69999999999999999999997 46789999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecCcccc--CCeEEeeEEeEeecCCCcccccEEEEEEEEee
Q 004109 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLET--DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
++.++ ++++||++.++|+++.. +.....|++|. ..|+|+|++.+..
T Consensus 83 ~~~~~--------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 83 DAAIG--------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred CCCCC--------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 98765 78999999999999877 56678999994 3599999998743
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-16 Score=142.66 Aligned_cols=102 Identities=24% Similarity=0.350 Sum_probs=85.6
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeC----CCceEEEE
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIG 430 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~ 430 (773)
..+.|.|.|++|+||+.+ +..+.+||||++.+.+ ...||++++++.||.|||.|.|.+.. ....|.|+
T Consensus 14 ~~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 14 VTSQLIVTVLQARDLPPR---DDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred CCCEEEEEEEEecCCCCc---CCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 347999999999999987 4457899999999964 56799999999999999999998754 25789999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004109 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
|||++..+ ++++||++.++|++...+ ....||+|
T Consensus 91 V~d~~~~~--------~~~~iG~~~i~l~~~~~~-~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDG--------ENDFLGEVVIDLADALLD-DEPHWYPL 124 (125)
T ss_pred EEeCCCCC--------CCcEeeEEEEeccccccc-CCcceEEC
Confidence 99998765 789999999999983222 23689998
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-16 Score=142.55 Aligned_cols=115 Identities=22% Similarity=0.339 Sum_probs=99.9
Q ss_pred EEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCC
Q 004109 368 ILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAG 444 (773)
Q Consensus 368 v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~ 444 (773)
|++|+||+. ..|.+||||++.+++...+|++++++.||+|||.|.|++..+ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------ 70 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------ 70 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence 688999985 347899999999999999999999999999999999999753 689999999998875
Q ss_pred CCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEeecc
Q 004109 445 GARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSS 497 (773)
Q Consensus 445 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~~ 497 (773)
+|++||++.++++++..+.....|++|...+ +....|+++++++|.|+.
T Consensus 71 --~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 71 --RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPPD 119 (127)
T ss_pred --CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCCC
Confidence 7899999999999999988889999997543 323358999999997764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-16 Score=141.41 Aligned_cols=104 Identities=22% Similarity=0.282 Sum_probs=86.6
Q ss_pred ccceEEEEEEEccCCCCCccCCCC-CCCCcEEEEEEC---CeeeeeeeccCCCCCccccEEEEEEeC----CCceEEEEE
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGR-GTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGV 431 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~-~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v 431 (773)
..+.|+|+|++|+||+.. +.. +.+||||++.+. ++..||+++++++||.|||+|.|.... ....|.+.|
T Consensus 14 ~~~~L~V~Vi~a~~L~~~---~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 14 EKKALLVNIIECRDLPAM---DEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred CCCEEEEEEEEeECCCCC---CCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 347999999999999987 443 789999999985 346799999999999999999994332 245799999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccC--CeEEeeEEeE
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD--RVYTHSYPLL 474 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~ 474 (773)
||+|.++ +|++||++.|+|+++... +....|.+|.
T Consensus 91 ~d~d~~~--------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 91 LSFDRYS--------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEcCCCC--------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9998876 799999999999998544 7788898874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.5e-16 Score=141.70 Aligned_cols=104 Identities=26% Similarity=0.357 Sum_probs=89.9
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---CCeeeeeeeccCCCCCccccEEEEEEeC----CCceEEEEEE
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVF 432 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~ 432 (773)
..+.|.|.|++|+||+.+ +..+.+||||++.+ ++...+|++++++.||.|||.|.|.+.. ....|.++||
T Consensus 14 ~~~~L~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 14 QESTLTLKILKAVELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred CCCEEEEEEEEecCCCCc---cCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 347999999999999887 45578999999998 3467899999999999999999998542 2457999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004109 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
|++.++ ++++||++.++++++..+.....|++|.
T Consensus 91 d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 91 DYDRFS--------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eCCCCc--------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 998875 7899999999999999888889999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-16 Score=141.17 Aligned_cols=118 Identities=25% Similarity=0.317 Sum_probs=94.4
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-CeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 004109 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-QKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 442 (773)
|+|+|++|+||+.+ +..+.+||||++.++ .+.+||+++++++||.|||.|.|++.. ...|.|+|||++.++
T Consensus 2 l~v~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~---- 73 (123)
T cd08382 2 VRLTVLCADGLAKR---DLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK---- 73 (123)
T ss_pred eEEEEEEecCCCcc---CCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC----
Confidence 78999999999887 445789999999996 677899999999999999999999965 789999999998764
Q ss_pred CCCCCCCccEEEEEecCccccCC-eEEeeEEeEeecCCCc-ccccEEEEEE
Q 004109 443 AGGARDSRIGKVRIRLSTLETDR-VYTHSYPLLVLYPNGV-KKMGEIHLAV 491 (773)
Q Consensus 443 ~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~g~-~~~G~v~l~~ 491 (773)
...|++||++.++++++.... ....||+|........ .-.|+|.+++
T Consensus 74 --~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 --KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred --CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 112689999999999986543 3367999966543211 2257777664
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.1e-16 Score=141.52 Aligned_cols=105 Identities=19% Similarity=0.329 Sum_probs=89.7
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC---CceEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~ 430 (773)
+..+.|.|.|++|+||+.++. ..+.+||||++.+.+ ...+|++++++.||.|||+|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~--~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADE--KKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCC--CCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 344899999999999998741 457899999998832 457999999999999999999998753 5689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004109 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
|||++.++ ++++||.+.++++++..+.....||+|
T Consensus 89 v~d~~~~~--------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFG--------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCc--------CCceeeEEEEecccccccCCCccEEEC
Confidence 99998775 789999999999999877778899986
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-16 Score=148.76 Aligned_cols=105 Identities=30% Similarity=0.451 Sum_probs=89.7
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeecEEEEEe---cCCCCceEEEEEEe
Q 004109 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG-----NYKGTTRHFEKKTNPEWNQVFAFSK---DRIQSSVLEVTVKD 107 (773)
Q Consensus 36 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~-----~~~~~T~~~~~~~nP~WnE~f~f~v---~~~~~~~l~i~V~d 107 (773)
..|.|.|+|++|+||+..+..+.+||||++.+. .++++|++++++.||.|||+|.|.+ .+.....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 668999999999999999988999999999983 2578999999999999999999985 23345689999999
Q ss_pred CCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeee
Q 004109 108 KDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (773)
Q Consensus 108 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (773)
.+.+ ++++||++.+++.++.... ....|+.|..
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~~-----~~~~w~~~~~ 138 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSYG-----QAVDWMDSTG 138 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccCC-----CccccccCCh
Confidence 9988 8999999999999987543 2467877754
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=139.66 Aligned_cols=118 Identities=29% Similarity=0.466 Sum_probs=99.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCe
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDD 114 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~ 114 (773)
.|+|+|++|++|+..+..+.+||||++.+++ ..++|++++++.||.|||+|.|.+.......|.|+|||.+.. +++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 6899999999999998889999999999875 367999999999999999999999765567899999999988 899
Q ss_pred eeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEecc
Q 004109 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (773)
+||++.++|.++.... +......|++|.. .|+|++.+.+...
T Consensus 82 ~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~------~g~i~l~~~~~~~ 123 (126)
T cd04043 82 LCGRASLKLDPKRFGD--DGLPREIWLDLDT------QGRLLLRVSMEGE 123 (126)
T ss_pred eEEEEEEecCHHHcCC--CCCCceEEEEcCC------CCeEEEEEEEeee
Confidence 9999999999865432 1223568999964 4788888877653
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=141.59 Aligned_cols=105 Identities=17% Similarity=0.245 Sum_probs=89.3
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC----eeeeeeeccCCCCCccccEEEEEEeC---CCceEE
Q 004109 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ----KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVIT 428 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~----~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~ 428 (773)
.+..+.|.|.|++|+||+++ +..+.+||||++.+ ++ .+.||+++++++||+|||.|.|++.. ....|.
T Consensus 10 ~~~~~~L~V~V~~arnL~~~---~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSAL---SIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCCEEEEEEeEecCCccc---ccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 45558999999999999987 45688999999998 22 46899999999999999999999874 367999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccC-CeEEeeEEe
Q 004109 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD-RVYTHSYPL 473 (773)
Q Consensus 429 v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 473 (773)
|.|||.+.++ ++++||.+.|+|+++... ....+||+|
T Consensus 87 ~~V~~~~~~~--------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ--------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC--------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999998765 789999999999999554 457789875
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-16 Score=146.02 Aligned_cols=117 Identities=26% Similarity=0.263 Sum_probs=94.1
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec--C
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--R 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~--~ 95 (773)
|...+++.|+ +..+.|.|+|++|+||+..+..|.+||||++++.+ .+.+|++++++.||+|||+|.|.+. +
T Consensus 2 G~i~~sL~Y~--~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~ 79 (136)
T cd08406 2 GEILLSLSYL--PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIV 79 (136)
T ss_pred cEEEEEEEEc--CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHH
Confidence 3356666766 55568999999999999999889999999999953 2568999999999999999999984 3
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004109 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
+....|.|+|||.+.. ++++||++.+..... + +...+|..+....+
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~--g-----~~~~hW~~ml~~~~ 126 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS--G-----MGLSHWNQMLASLR 126 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC--C-----hhHHHHHHHHHCCC
Confidence 5678899999999988 999999999976532 1 22456777666543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-16 Score=140.78 Aligned_cols=113 Identities=28% Similarity=0.477 Sum_probs=94.9
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecC--CCC
Q 004109 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDR--IQS 98 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~--~~~ 98 (773)
..+++.|+ +..+.|.|+|++|+||+..+ ..+.+||||++++.+ ...+|++++++.||+|||+|.|.+.. ...
T Consensus 3 l~~~l~y~--~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~ 80 (123)
T cd08390 3 LWFSVQYD--LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQR 80 (123)
T ss_pred EEEEEEEC--CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcc
Confidence 45666666 55569999999999999988 578899999999843 56789999999999999999999853 234
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004109 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
..|.|+|||.+.. ++++||++.++|.++.... ....|++|+
T Consensus 81 ~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~w~~L~ 122 (123)
T cd08390 81 RTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVK-----GGVVWRDLE 122 (123)
T ss_pred cEEEEEEEECCcCCCCcEEEEEEEeccceecCC-----CceEEEeCC
Confidence 6899999999988 8999999999999998753 246899986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=141.28 Aligned_cols=120 Identities=26% Similarity=0.441 Sum_probs=98.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeecccCCCCCccccceEEEEeeCC---------CCCeEEEEEEEc
Q 004109 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEP---------FEEHLILTVEDR 271 (773)
Q Consensus 201 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~---------~~~~l~i~V~d~ 271 (773)
+|+|+|++|++|+.++..|.+||||++.+++++++|+++++ +.||.|||.|.|.+... ....|.++|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 69999999999999999999999999999999999999876 99999999999975322 124689999999
Q ss_pred cCCCCCceeEEEEE-eccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEE
Q 004109 272 VAPNKDEVLGKCMI-PLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICL 332 (773)
Q Consensus 272 ~~~~~d~~iG~~~i-~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~ 332 (773)
+..++|++||++.+ ++..+.. .+......+|++|... ....|+|.+.+.+
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~-~~~~~~~~~W~~L~~~----------~~~~Geil~~~~~ 131 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDL-EEDFPPKLQWFPIYKG----------GQSAGELLAAFEL 131 (135)
T ss_pred cCCCCCccceEEEeeeeeeccc-CCCCCCCceEEEeecC----------CCchhheeEEeEE
Confidence 99899999999987 4444432 2234567899999754 2358999888875
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.7e-16 Score=143.72 Aligned_cols=108 Identities=28% Similarity=0.467 Sum_probs=90.9
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCC-CCceEEEE
Q 004109 40 LYVRVVKAKDLPPKDVT--------------GSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI-QSSVLEVT 104 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~--------------~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~-~~~~l~i~ 104 (773)
|.|+|++|++|+.+|.. +.+||||+|.+++++.+|++++++.||+|||+|.|.+..+ ..+.|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999998744 3789999999999999999999999999999999997432 35789999
Q ss_pred EEeCCCC-CCeeeEEEEEEcCccCCCCCCC--CCCcCeEEEeeeCC
Q 004109 105 VKDKDFV-KDDFMGRVLFDLNEIPKRVPPD--SPLAPQWYRLEDRK 147 (773)
Q Consensus 105 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~--~~~~~~w~~L~~~~ 147 (773)
|||.|.. +|++||.+.+++.++....... ....++|+.|.+..
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 9999998 9999999999999987653110 12457999998764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-16 Score=139.16 Aligned_cols=98 Identities=28% Similarity=0.392 Sum_probs=84.6
Q ss_pred ceEEEEEEEccCCCCCccCCCC-CCCCcEEEEEEC---CeeeeeeeccCCCCCccccEEEEEEeCC----CceEEEEEEe
Q 004109 362 GVLELGILNAQGLMPMKTKDGR-GTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGVFD 433 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~-~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v~d 433 (773)
|.|+|+|++|+||+.. +.. +.+||||++.+. ....+|+++++++||.|||.|.|.+..+ ...|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKA---DFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 7899999999999987 444 789999999984 3468999999999999999999988753 5789999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004109 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
+|.++ +|++||++.++++++... ..|+++
T Consensus 78 ~d~~~--------~dd~lG~~~i~l~~l~~~---~~~~~~ 106 (111)
T cd04041 78 SDRFT--------ADDRLGRVEIDLKELIED---RNWMGR 106 (111)
T ss_pred CCCCC--------CCCcceEEEEEHHHHhcC---CCCCcc
Confidence 99876 789999999999999743 467776
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=144.49 Aligned_cols=105 Identities=21% Similarity=0.338 Sum_probs=89.9
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCeeeeeeeccCCCCCccccEEEEEEeCC----CceEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITI 429 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v 429 (773)
...|.|.|.|++|+||+.. +..+.+||||++.+ +...+||++++++.||.|||.|.|.+... ...|.|
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~---d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i 100 (162)
T cd04020 24 PSTGELHVWVKEAKNLPAL---KSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLEL 100 (162)
T ss_pred CCCceEEEEEEeeeCCCCC---CCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEE
Confidence 4569999999999999987 44688999999988 23568999999999999999999986432 458999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004109 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 430 ~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
+|||++.++ +|++||++.+++.++........|+.+.
T Consensus 101 ~V~d~d~~~--------~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 101 TVWDHDKLS--------SNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred EEEeCCCCC--------CCceEEEEEEeCCccccCCCccccccCC
Confidence 999999875 7999999999999997766678888774
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=138.31 Aligned_cols=104 Identities=19% Similarity=0.247 Sum_probs=88.6
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---CeeeeeeeccCCCCCccccEEEEE-EeC---CCceEEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWE-VFD---PCTVITIGV 431 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~-v~~---~~~~l~v~v 431 (773)
+..+.|.|+|++|+||+.. +..|.+||||++.+. .++.||+++++ .||+|||.|.|+ +.. ....|.+.|
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~---~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V 88 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTK---DRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL 88 (124)
T ss_pred CCCCEEEEEEEEecCCCch---hcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence 3347899999999999987 445789999998762 35689999887 999999999998 443 267899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
||++.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 89 ~~~~~~~--------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 89 YGVERMR--------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EECCCcc--------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9999876 7899999999999998888889999984
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-16 Score=143.51 Aligned_cols=102 Identities=31% Similarity=0.534 Sum_probs=89.9
Q ss_pred ccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------eeeeeeccCCCCCC
Q 004109 33 LVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----------------------------YKGTTRHFEKKTNP 83 (773)
Q Consensus 33 ~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----------------------------~~~~T~~~~~~~nP 83 (773)
..++.+.|.|+|++|+||...|..|.+||||++.+.+ +.++|+++.++.||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 3578899999999999999999999999999999964 23689999999999
Q ss_pred eeecEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004109 84 EWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 84 ~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
.|||+|.|.+.++....|.|+|||.+ +++||++.+++.++... ....||+|
T Consensus 103 ~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~------~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC------GLDSWFKL 153 (153)
T ss_pred ccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCC------CCCCeEeC
Confidence 99999999997766789999999997 88999999999999832 25799986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=139.33 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=85.7
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C-e--eeeeeeccCCCCCccccEEEEEEeC---CCceEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q-K--WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~-~--~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~ 430 (773)
+..+.|.|.|++|+||+.. +..|.+||||++.+. + + +.||+++++++||+|||+|.|.+.. ....|.|+
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~---~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 12 PTAERLTVVVVKARNLVWD---NGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred CCCCEEEEEEEEeeCCCCc---cCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 4447999999999999987 556889999999983 2 2 5689999999999999999999875 36789999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
|||+|..+ ++++||++.|+... .+....+|..+..
T Consensus 89 V~~~d~~~--------~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 89 VAESTEDG--------KTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EEeCCCCC--------CCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 99999876 78999999998764 4455567777654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=140.86 Aligned_cols=91 Identities=30% Similarity=0.535 Sum_probs=83.8
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 004109 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 440 (773)
.|.|+|.|++|+||+.. +. +.+||||+++++++..+|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~---d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVR---DF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCC---CC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 38899999999999875 33 6899999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCccEEEEEecCcccc
Q 004109 441 DKAGGARDSRIGKVRIRLSTLET 463 (773)
Q Consensus 441 ~~~~~~~d~~lG~~~i~l~~l~~ 463 (773)
+|++||++.+++.++..
T Consensus 75 ------~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 75 ------KDDSMGEAEIDLEPLVE 91 (145)
T ss_pred ------CCCEEEEEEEEHHHhhh
Confidence 78999999999998754
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=137.48 Aligned_cols=95 Identities=22% Similarity=0.394 Sum_probs=83.9
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeC--CCceEEEEEEeCC
Q 004109 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD--PCTVITIGVFDNC 435 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~--~~~~l~v~v~d~~ 435 (773)
....|.|+|+|++|+||+. +..+.+||||+|.++++.+||++++++.||+|||+|.|.... ....|+|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 4567999999999999974 455789999999999999999999999999999999998543 3789999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEecCccccC
Q 004109 436 HLHGGDKAGGARDSRIGKVRIRLSTLETD 464 (773)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~ 464 (773)
.++ +|++||++.++|.....+
T Consensus 100 ~~s--------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW--------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC--------CCCeeEEEEEEecCCcee
Confidence 876 899999999999976654
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=141.80 Aligned_cols=91 Identities=38% Similarity=0.569 Sum_probs=84.9
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004109 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (773)
.|.|+|+|++|+||+..+. +.+||||++++++++++|++++++.||+|||+|.|.+.++ ...+.|+|||++.+ +|++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCE
Confidence 3789999999999998886 8999999999999999999999999999999999999876 67899999999988 8999
Q ss_pred eEEEEEEcCccCCC
Q 004109 116 MGRVLFDLNEIPKR 129 (773)
Q Consensus 116 lG~~~i~l~~l~~~ 129 (773)
||.+.+++.++...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999999865
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=138.18 Aligned_cols=104 Identities=28% Similarity=0.430 Sum_probs=91.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCC-CCCCeeecEEEEEecCC---CCceEEEEEEeCCCC-C
Q 004109 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEK-KTNPEWNQVFAFSKDRI---QSSVLEVTVKDKDFV-K 112 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~-~~nP~WnE~f~f~v~~~---~~~~l~i~V~d~~~~-~ 112 (773)
|.|.|+|++|++|+..+..+.+||||+++++++.++|+++.+ +.||.|||+|.|.+... ....|.|+|||.+.+ +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999999888889999999999998889998874 89999999999999765 357899999999988 8
Q ss_pred CeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004109 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
+++||++.+++.++..+. ..+.|++|...
T Consensus 81 d~~iG~~~i~l~~l~~~~-----~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEG-----VEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCC-----CCcCceEeecc
Confidence 999999999999998653 24688888775
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=137.86 Aligned_cols=94 Identities=28% Similarity=0.322 Sum_probs=83.6
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEec-CCCCceEEEEEEeCCCC-
Q 004109 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKD-RIQSSVLEVTVKDKDFV- 111 (773)
Q Consensus 34 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~-~~~~~~l~i~V~d~~~~- 111 (773)
...++.|.|+|++|++|+. +..+.+||||+|++++++++|++++++.||+|||+|.|... ......|.|+|||++..
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 4677899999999999984 56788999999999999999999999999999999999753 23568999999999998
Q ss_pred CCeeeEEEEEEcCccCC
Q 004109 112 KDDFMGRVLFDLNEIPK 128 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~ 128 (773)
+|++||++.++|.....
T Consensus 103 ~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 103 DDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCeeEEEEEEecCCce
Confidence 99999999999997663
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=139.96 Aligned_cols=106 Identities=30% Similarity=0.455 Sum_probs=90.5
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeccCCCCCCeeecEEEEEec
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------YKGTTRHFEKKTNPEWNQVFAFSKD 94 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-------~~~~T~~~~~~~nP~WnE~f~f~v~ 94 (773)
+|...+++.|+ ...+.|.|+|++|++|+..+..+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+.
T Consensus 2 ~G~l~~~l~y~--~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~ 79 (133)
T cd04009 2 YGVLTVKAYYR--ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVP 79 (133)
T ss_pred ceEEEEEEEEc--CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEec
Confidence 34456666665 55679999999999999988888999999999963 4689999999999999999999985
Q ss_pred CC----CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCC
Q 004109 95 RI----QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKR 129 (773)
Q Consensus 95 ~~----~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 129 (773)
.. ....|.|+|||++.. ++++||++.++|.++..-
T Consensus 80 ~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 80 PEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred hhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 42 356899999999988 799999999999999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=139.40 Aligned_cols=89 Identities=29% Similarity=0.393 Sum_probs=76.5
Q ss_pred EEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----EEEEeecccCCCCCccccceEEEEeeCC--CCCeEEEEEEE
Q 004109 200 WYLRVNVIEAQDLQPTDK--GRFPEVYVKAQLGN-----QALRTRVSASRTINPMWNEDLMFVAAEP--FEEHLILTVED 270 (773)
Q Consensus 200 ~~L~V~v~~a~~L~~~~~--~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d 270 (773)
+.|.|.|++|+||..++. .+.+||||++++.. .+.||++.++ +.||+|||.|.|.+... .+..|.|+|+|
T Consensus 15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 479999999999999883 34589999999964 2568888776 99999999999998653 35679999999
Q ss_pred ccCCCCCceeEEEEEeccc
Q 004109 271 RVAPNKDEVLGKCMIPLQY 289 (773)
Q Consensus 271 ~~~~~~d~~iG~~~i~L~~ 289 (773)
++..+++++||++.+++..
T Consensus 94 ~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 94 QDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCCCcCcceeceEEecCcC
Confidence 9999999999999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-16 Score=143.28 Aligned_cols=114 Identities=25% Similarity=0.438 Sum_probs=93.8
Q ss_pred ceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--CCC
Q 004109 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQS 98 (773)
Q Consensus 26 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~--~~~ 98 (773)
.+++.|+ ...+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||.|||+|.|.+.. +..
T Consensus 3 ~~~l~y~--~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 3 LVSLMYN--TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred EEEEEEc--CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 3455555 66789999999999999999888999999999964 36789999999999999999999853 345
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004109 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
..|.|+|||.+.. ++++||.+.+++.... ....+|+++....+
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~-------~~~~~W~~~l~~~~ 124 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAKG-------ERLRHWLDCLKNPD 124 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCCC-------chHHHHHHHHhCCC
Confidence 7899999999988 8999999999997521 22467888766544
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-15 Score=135.54 Aligned_cols=104 Identities=27% Similarity=0.393 Sum_probs=92.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004109 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (773)
|.|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+... .+.|.|+|||++.. +|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 68999999999999998889999999999987 568999999999999999999998764 47899999999988 8899
Q ss_pred eEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004109 116 MGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 116 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
||++.+++.++..+. ...||.|.+.+.
T Consensus 80 IG~~~~~l~~l~~~~------~~~~~~~~~~~~ 106 (120)
T cd04045 80 LGSVEINVSDLIKKN------EDGKYVEYDDEE 106 (120)
T ss_pred eeEEEEeHHHhhCCC------CCceEEecCCCc
Confidence 999999999998652 367999888763
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-15 Score=138.19 Aligned_cols=117 Identities=23% Similarity=0.347 Sum_probs=93.0
Q ss_pred EEEEEEEccC--CCCCccCCCCCCCCcEEEEEE-----CCeeeeeeeccCCCCCccccEEEEEEeCC---------CceE
Q 004109 364 LELGILNAQG--LMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFDP---------CTVI 427 (773)
Q Consensus 364 l~v~v~~a~~--L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~~~---------~~~l 427 (773)
..++|..|+| |+.. +..+.+||||++.+ +.+..||+++++|+||+|||.|.|.+... ...|
T Consensus 4 ~el~i~~~~~~~l~~~---~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCC---cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 4455666666 5655 45678999999986 34679999999999999999999999654 3479
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCc-ccccEEEEEEEEe
Q 004109 428 TIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV-KKMGEIHLAVRFT 494 (773)
Q Consensus 428 ~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~-~~~G~v~l~~~~~ 494 (773)
.|+|||.+.+. .+|++||++.++|+.+..+.....|++|.. |. ...|.++++++..
T Consensus 81 ~~~V~d~~~f~-------~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~----~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 81 KFEVYHKGGFL-------RSDKLLGTAQVKLEPLETKCEIHESVDLMD----GRKATGGKLEVKVRLR 137 (155)
T ss_pred EEEEEeCCCcc-------cCCCeeEEEEEEcccccccCcceEEEEhhh----CCCCcCCEEEEEEEec
Confidence 99999998752 169999999999999988777788999963 22 2358999999873
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=140.26 Aligned_cols=100 Identities=27% Similarity=0.359 Sum_probs=84.6
Q ss_pred CcceeeeecccCceeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec--
Q 004109 24 GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDV--TGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD-- 94 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~--~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~-- 94 (773)
...+++.|. +..+.|.|+|++|+||...+. .+.+||||++++.. .++||++++++.||+|||+|.|.+.
T Consensus 3 el~~sL~Y~--~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 3 EVLLSISYL--PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred EEEEEEEEe--CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 345666666 666799999999999999873 35589999999875 2568999999999999999999984
Q ss_pred CCCCceEEEEEEeCCCC-CCeeeEEEEEEcCc
Q 004109 95 RIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNE 125 (773)
Q Consensus 95 ~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~ 125 (773)
++....|.|+|||.|.+ ++++||.+.+.+..
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 45577899999999998 99999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-15 Score=136.06 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=90.5
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---CeeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVF 432 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~ 432 (773)
+..+.|.|.|++|+||+.++. ..+.+||||++.+. ....+|+++++++||.|||.|.|.+... ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~--~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTK--DVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCCCEEEEEEEEecCCCCccC--CCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 444799999999999998731 35789999999983 3557999999999999999999998753 468999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004109 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
|.+..+ ++++||++.++|+++........|++|.
T Consensus 89 d~~~~~--------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFS--------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCC--------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 998765 7899999999999998888788999983
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-15 Score=138.31 Aligned_cols=113 Identities=26% Similarity=0.315 Sum_probs=94.7
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-eeeeeeecc-CCCCCccccEEEEEEeCC-----CceEEEEEEeCC
Q 004109 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTII-DSPTPKWNEQYTWEVFDP-----CTVITIGVFDNC 435 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~-~t~~P~wne~~~f~v~~~-----~~~l~v~v~d~~ 435 (773)
.|+|.|++|++|+.. +..+.+||||++++++ +..+|+++. ++.||.|||.|.|.+.++ ...|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~---~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNV---NLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCC---CcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 378999999999976 4457899999999988 889999986 589999999999999877 689999999998
Q ss_pred CCCCCCCCCCCCCCccEEEEEecCccccCCe-----EEeeEEeEeecCCCcccccEEEE
Q 004109 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRV-----YTHSYPLLVLYPNGVKKMGEIHL 489 (773)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~v~l 489 (773)
.++ +|++||.+.|++.++..+.. ...||+|.... | +..|.|++
T Consensus 78 ~~~--------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 78 PSL--------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CCC--------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 765 78999999999999976554 46899997633 3 34587763
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-15 Score=134.56 Aligned_cols=118 Identities=27% Similarity=0.338 Sum_probs=96.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (773)
.|.|+|++|+ |...+..+.+||||+++++++ ..+|++++++.||.|||+|.|.+.+ .+.|.|+|||.+.. ++++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 6999999998 555555788999999999987 8999999999999999999999864 57899999999998 99999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCC--CCceeeEEEEEE
Q 004109 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK--GDKVRGELMLAV 159 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~~ 159 (773)
|++.++|.++.............|++|.... +....|+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999865432222233589998665 235679988764
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-15 Score=137.15 Aligned_cols=103 Identities=25% Similarity=0.420 Sum_probs=91.9
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccC-CCCCccccEEEEEEeCC----CceEEEEEEeCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWEVFDP----CTVITIGVFDNCH 436 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~f~v~~~----~~~l~v~v~d~~~ 436 (773)
|.|+|.|++|+||+.. +..+.+||||++.+++...+|+++.+ +.||.|||.|.|.+..+ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDT---DFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCC---CCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999987 44578999999999999999999885 89999999999999986 5789999999988
Q ss_pred CCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 437 LHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 437 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
++ +|++||++.++++++..+.....|++|..
T Consensus 78 ~~--------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FS--------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CC--------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 75 78999999999999988777789999854
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=170.03 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=94.7
Q ss_pred CCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCcc
Q 004109 383 RGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (773)
Q Consensus 383 ~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l 461 (773)
.+++||||+|.++++ ..||+++++++||+|||+|.|.+.++...|++.|+|+|.++ +++||.+.|++.++
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g---------aD~IG~a~IPL~~L 144 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG---------AQIIGTAKIPVRDI 144 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC---------CceeEEEEEEHHHc
Confidence 357899999999876 46999999999999999999999999889999999999985 58999999999999
Q ss_pred ccCCeEEeeEEeEeecCCCcccccEEEEEEEEeecch
Q 004109 462 ETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSL 498 (773)
Q Consensus 462 ~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~~~ 498 (773)
..|...+.|++|.....+..+..|+|+++++|.|...
T Consensus 145 ~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 145 ASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQ 181 (868)
T ss_pred CCCCceEEEEEccccCCCCCCCCcEEEEEEEEEEccc
Confidence 9999999999998765544445689999999988754
|
|
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.9e-16 Score=141.99 Aligned_cols=117 Identities=28% Similarity=0.413 Sum_probs=96.1
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR-- 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~-- 95 (773)
|...++++|+ ...+.|.|+|++|+||+..+..|.+||||++.+.+ .+.+|++++++.||.|||+|.|.+..
T Consensus 2 G~l~~~l~y~--~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~ 79 (136)
T cd08404 2 GELLLSLCYQ--PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEE 79 (136)
T ss_pred CeEEEEEEEe--CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence 3456777776 45568999999999999999889999999999853 25789999999999999999999853
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004109 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
.....|.|+|||++.+ ++++||++.+++.. . . ....+|++|.+..+
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~-~-----~~~~~w~~l~~~~~ 126 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-S-G-----SGGHHWKEVCNPPR 126 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcC-C-C-----chHHHHHHHHhCCC
Confidence 3456799999999998 89999999999987 2 1 23578998877654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.7e-15 Score=134.55 Aligned_cols=116 Identities=27% Similarity=0.392 Sum_probs=95.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eeeeeeccCCCCCCee-ecEEEEEecCCCCceEEEE
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------------YKGTTRHFEKKTNPEW-NQVFAFSKDRIQSSVLEVT 104 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-------------~~~~T~~~~~~~nP~W-nE~f~f~v~~~~~~~l~i~ 104 (773)
+..|++++|+||+ .+..|++||||++.+.+ ++++|++++++.||+| ||+|.|.+.. .+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4679999999998 66789999999999953 3689999999999999 9999999853 5689999
Q ss_pred EEeCCCC----CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC-CCceeeEEEEEE
Q 004109 105 VKDKDFV----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAV 159 (773)
Q Consensus 105 V~d~~~~----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~ 159 (773)
|||++.. .+++||++.+++.++..+.. ......||+|.... .....|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~--~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHA--IGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhccccc--CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9997653 27999999999999986532 23367899998765 335789998865
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-15 Score=139.34 Aligned_cols=102 Identities=31% Similarity=0.549 Sum_probs=90.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeeeeccCCCCCCeeecEEEEEecCC---------------CCce
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMG----NYKGTTRHFEKKTNPEWNQVFAFSKDRI---------------QSSV 100 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~----~~~~~T~~~~~~~nP~WnE~f~f~v~~~---------------~~~~ 100 (773)
|+|+|++|+||+.. ..+.+||||+++++ .++++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 77899999999998 6789999999999999999999998654 4578
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
|.|+|||.+.. ++++||++.+++.++.... ....||+|....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAG-----SHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCC-----cccceEecCCcC
Confidence 99999999988 9999999999999987432 357899999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-15 Score=135.20 Aligned_cols=103 Identities=30% Similarity=0.363 Sum_probs=91.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 440 (773)
|.|+|.|++|+||+.. +..+.+||||++.+++ ...+|+++.++.||.|||.|.|++..+...|.|+|||++..+
T Consensus 1 g~L~V~Vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNL---EGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCc---cCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 6899999999999987 4458899999999977 468999999999999999999999888889999999998875
Q ss_pred CCCCCCCCCccEEEEEecCccccCCeEEeeEEeEee
Q 004109 441 DKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (773)
Q Consensus 441 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 476 (773)
+|++||++.+++.++..+ ....||-|.+.
T Consensus 76 ------~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 ------KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred ------CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 789999999999999776 55789988763
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.62 E-value=9e-15 Score=133.85 Aligned_cols=118 Identities=22% Similarity=0.392 Sum_probs=99.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCC
Q 004109 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN---QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKD 277 (773)
Q Consensus 201 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d 277 (773)
.++|+|++|++|+..+..+.+||||++.+++ +..+|+++++ +.||.|||+|.|.+.......|.|+|||++..+++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 5899999999999999889999999999864 4679999876 99999999999999876567899999999988899
Q ss_pred ceeEEEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEcc
Q 004109 278 EVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEG 334 (773)
Q Consensus 278 ~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~ 334 (773)
++||++.++|+.+... .+......|++|.+ .|++++.+++.+
T Consensus 81 ~~iG~~~i~l~~~~~~-~~~~~~~~w~~l~~--------------~g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFG-DDGLPREIWLDLDT--------------QGRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcC-CCCCCceEEEEcCC--------------CCeEEEEEEEee
Confidence 9999999999976432 11344678999975 478888888654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-16 Score=159.84 Aligned_cols=104 Identities=34% Similarity=0.589 Sum_probs=93.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC-CCCceEEEEEEeCCCC
Q 004109 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR-IQSSVLEVTVKDKDFV 111 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~-~~~~~l~i~V~d~~~~ 111 (773)
..|.|+|.+|+||.++|.+|.+||||++++-+ .+++|++++.++||+|||+|.|.+.. -....|.|+|||.|+.
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence 48999999999999999999999999999964 46899999999999999999999843 2467899999999999
Q ss_pred -CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 112 -KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
++||||+.++.+++|.+.+ ...||.|.+++
T Consensus 260 sRNDFMGslSFgisEl~K~p------~~GWyKlLsqe 290 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKAP------VDGWYKLLSQE 290 (683)
T ss_pred ccccccceecccHHHHhhcc------hhhHHHHhhhh
Confidence 9999999999999999753 57899998875
|
|
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-15 Score=140.74 Aligned_cols=116 Identities=22% Similarity=0.395 Sum_probs=92.2
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec--CCC
Q 004109 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQ 97 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~--~~~ 97 (773)
..+++.|. +..+.|.|+|++|+||+..+..|.+||||++.+.+ .+++|++++++.||+|||+|.|.+. +..
T Consensus 3 i~~~l~y~--~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~ 80 (135)
T cd08410 3 LLLSLNYL--PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE 80 (135)
T ss_pred EEEEEEEC--CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence 35566665 56679999999999999999889999999999832 3578999999999999999999984 334
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004109 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
...|.|+|||++.. ++++||++.+....... ....+|+.|....+
T Consensus 81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~------~~~~~W~~l~~~~~ 126 (135)
T cd08410 81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP------SETNHWRRMLNSQR 126 (135)
T ss_pred CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCc------hHHHHHHHHHhCCC
Confidence 55799999999988 99999999876533321 12467888877654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-15 Score=136.32 Aligned_cols=114 Identities=33% Similarity=0.524 Sum_probs=97.2
Q ss_pred CcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCC-C
Q 004109 24 GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRI-Q 97 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~-~ 97 (773)
...++.+|.. +.|+|+|++|+||+..+..+.+||||++.+.+ .+++|+++.++.||.|||+|.|.+... .
T Consensus 3 ~~~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~ 78 (131)
T cd04026 3 RIYLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADK 78 (131)
T ss_pred EEEEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhc
Confidence 3456666654 68999999999999988888999999999963 578999999999999999999998643 3
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
...|.|+|||++.. ++++||.+.+++.++... ....||+|.+.+
T Consensus 79 ~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~------~~~~w~~L~~~~ 123 (131)
T cd04026 79 DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM------PVDGWYKLLNQE 123 (131)
T ss_pred CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC------ccCceEECcCcc
Confidence 56899999999987 899999999999999854 257899998875
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.2e-15 Score=132.89 Aligned_cols=93 Identities=17% Similarity=0.270 Sum_probs=76.5
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeecccCCC-CCccccceEEEEeeCCC-CCeEEEEEE
Q 004109 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTRVSASRT-INPMWNEDLMFVAAEPF-EEHLILTVE 269 (773)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t-~nP~wne~f~f~~~~~~-~~~l~i~V~ 269 (773)
|..++|+|+|++|+||+.++..+.+||||++.+.. .+.||+++++ | .||.|||+|.|++.... +-.|.++||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEE
Confidence 34468999999999999886667789999998842 4678888776 7 46999999999997543 236888899
Q ss_pred EccCCCCCceeEEEEEecccc
Q 004109 270 DRVAPNKDEVLGKCMIPLQYV 290 (773)
Q Consensus 270 d~~~~~~d~~iG~~~i~L~~l 290 (773)
|++..+++++||++.++.+..
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCcCCceEEEEEECCccC
Confidence 998888999999999999764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-15 Score=136.77 Aligned_cols=117 Identities=26% Similarity=0.447 Sum_probs=94.3
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeccCCCCCCeeecEEEEEec--C
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG--N---YKGTTRHFEKKTNPEWNQVFAFSKD--R 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~--~---~~~~T~~~~~~~nP~WnE~f~f~v~--~ 95 (773)
|...+++.|+ +..+.|.|+|++|+||+..+..+.+||||++++. + .+.+|++++++.||.|||+|.|.+. .
T Consensus 2 G~l~~sl~y~--~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 2 GELLLSLCYN--PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred cEEEEEEEEc--CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 3456677776 5567999999999999998888999999999983 2 3578999999999999999999974 3
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004109 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
.....|.|+|||.+.+ ++++||++.+++.+... ...+|++|....+
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~-------~~~~w~~~~~~~~ 126 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL-------ELKHWKDMLSKPR 126 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccCCc-------hHHHHHHHHhCCC
Confidence 3456899999999988 89999999999987521 2456766665543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=134.48 Aligned_cols=118 Identities=20% Similarity=0.324 Sum_probs=94.5
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE--C---CeeeeeeccCCCCCCeeecEEEEEecCC--------CCceEEEE
Q 004109 40 LYVRVVKAKD--LPPKDVTGSCDPYVEVKM--G---NYKGTTRHFEKKTNPEWNQVFAFSKDRI--------QSSVLEVT 104 (773)
Q Consensus 40 L~V~v~~a~~--L~~~d~~~~~dpyv~v~~--~---~~~~~T~~~~~~~nP~WnE~f~f~v~~~--------~~~~l~i~ 104 (773)
..++|+.|++ |+..+..+.+||||++.+ . .++.||+++++|.||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4566777777 677777788999999997 2 3689999999999999999999998532 25679999
Q ss_pred EEeCCCC--CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004109 105 VKDKDFV--KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 105 V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
|||.+.+ +|++||++.++|..+..+. ....|++|.+.. ....|.|.+.+....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~-----~~~~~~~L~~~~-k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKC-----EIHESVDLMDGR-KATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccC-----cceEEEEhhhCC-CCcCCEEEEEEEecC
Confidence 9999986 7999999999999997653 245699998632 234689999987764
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=139.94 Aligned_cols=116 Identities=22% Similarity=0.371 Sum_probs=93.7
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeccCCCCCCeeecEEEEEec--CC
Q 004109 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHFEKKTNPEWNQVFAFSKD--RI 96 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~------~~~~T~~~~~~~nP~WnE~f~f~v~--~~ 96 (773)
..+++.|+ ...+.|.|+|++|+||+..+..|.+||||++.+.+ .+++|++++++.||+|||+|.|.+. ++
T Consensus 4 i~~sL~Y~--~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 4 LLLGLEYN--ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred EEEEeEEc--CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 34555565 66679999999999999998889999999999953 2568999999999999999999985 45
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004109 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
....|.|.|||.+.. ++++||++.+++...-.. ...+|+.+....+
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~~~~ 128 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKESKG 128 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCCCch------HHHHHHHHHhCCC
Confidence 667999999999988 999999999987643311 2357887766544
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-15 Score=135.80 Aligned_cols=90 Identities=31% Similarity=0.583 Sum_probs=81.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK--GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~--~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (773)
+|+|+|++|++|+..+..+.+||||++++++++ .+|++++++.||+|||+|.|.+..+....|.|+|||++.. +|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 479999999999999988999999999999864 5788888999999999999998666678999999999998 9999
Q ss_pred eEEEEEEcCccCC
Q 004109 116 MGRVLFDLNEIPK 128 (773)
Q Consensus 116 lG~~~i~l~~l~~ 128 (773)
||++.+++.+...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998774
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-15 Score=140.15 Aligned_cols=115 Identities=30% Similarity=0.384 Sum_probs=93.2
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--CC
Q 004109 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQ 97 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~--~~ 97 (773)
..+++.|. +..+.|.|+|++|++|+..+..+.+||||++.+.+ .+++|++++++.||.|||+|.|.+.. ..
T Consensus 4 l~~~l~y~--~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~ 81 (136)
T cd08402 4 ICFSLRYV--PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQ 81 (136)
T ss_pred EEEEeEEc--CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhC
Confidence 34555555 66789999999999999998889999999999953 35789999999999999999999853 33
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004109 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
...|.|+|||.+.. ++++||++.+++.... ....+|+++....+
T Consensus 82 ~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~-------~~~~~W~~~~~~~~ 126 (136)
T cd08402 82 KVHLIVTVLDYDRIGKNDPIGKVVLGCNATG-------AELRHWSDMLASPR 126 (136)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEECCccCC-------hHHHHHHHHHhCCC
Confidence 45899999999988 8999999999997532 22467887766543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=7e-15 Score=132.29 Aligned_cols=112 Identities=30% Similarity=0.473 Sum_probs=95.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (773)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.+.....+.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999988888999999999987 457999999999999999999999765678899999999988 899999
Q ss_pred EEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEE
Q 004109 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELML 157 (773)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l 157 (773)
++.+++.++..+. ....|++|....+ ...|.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~L~~~g~-~~~~~~~~ 114 (115)
T cd04040 81 SAYIDLSDLEPEE-----TTELTLPLDGQGG-GKLGAVFL 114 (115)
T ss_pred EEEEEHHHcCCCC-----cEEEEEECcCCCC-ccCceEEc
Confidence 9999999987642 3578999987543 34566643
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.1e-15 Score=131.85 Aligned_cols=111 Identities=27% Similarity=0.415 Sum_probs=94.3
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-eeeeeeeccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCCC
Q 004109 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~~~~~ 441 (773)
|+|.|++|++|+.. +..+.+||||++.+++ ...+|+++.++.+|.|||.|.|.+.+ ....+.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCC---CCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 57899999999987 4457899999999976 45799999999999999999999987 4789999999998765
Q ss_pred CCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEE
Q 004109 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIH 488 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~ 488 (773)
++++||++.+++.++..+.....|++|.. +|..+.|.+.
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~~~~L~~---~g~~~~~~~~ 113 (115)
T cd04040 75 -----KDDLLGSAYIDLSDLEPEETTELTLPLDG---QGGGKLGAVF 113 (115)
T ss_pred -----CCCceEEEEEEHHHcCCCCcEEEEEECcC---CCCccCceEE
Confidence 78999999999999998888899999964 3434456654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.60 E-value=6e-15 Score=136.46 Aligned_cols=116 Identities=21% Similarity=0.357 Sum_probs=92.9
Q ss_pred CcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec--CC
Q 004109 24 GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RI 96 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~--~~ 96 (773)
...+++.|+ +..+.|.|+|++|+||+..+ .+.+||||++.+.+ .+++|++++++.||+|||+|.|.+. ++
T Consensus 3 ~i~~sl~y~--~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l 79 (137)
T cd08409 3 DIQISLTYN--PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQL 79 (137)
T ss_pred EEEEEEEEC--CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHh
Confidence 345666666 55679999999999999888 78899999999864 3668999999999999999999984 45
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
....|.|+|||.+.. ++++||++.+.......+. ...+|..+....
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~-----~~~hW~~~~~~p 126 (137)
T cd08409 80 DTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGK-----ELEHWNDMLSKP 126 (137)
T ss_pred CccEEEEEEEeCCCCCCcceEEEEEECCcccCCCh-----HHHHHHHHHhCC
Confidence 567899999999987 9999999999865554331 245676666543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-15 Score=136.65 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=90.1
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEEC----CeeeeeeeccCCCCCccccEEEEEEeCC----------------
Q 004109 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYG----QKWVRTRTIIDSPTPKWNEQYTWEVFDP---------------- 423 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~----~~~~~T~~~~~t~~P~wne~~~f~v~~~---------------- 423 (773)
|.|.|++|+||+.+ . .|.+||||++.++ +...+|+++.++.||.|||.|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~-~---~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T cd08675 1 LSVRVLECRDLALK-S---NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76 (137)
T ss_pred CEEEEEEccCCCcc-c---CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccc
Confidence 57899999999875 2 3689999999998 7789999999999999999999998864
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecC
Q 004109 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYP 478 (773)
Q Consensus 424 ~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 478 (773)
...|.|+|||++..+ ++++||++.+++.++........||+|.....
T Consensus 77 ~~~l~i~V~d~~~~~--------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 77 KSELRVELWHASMVS--------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred ccEEEEEEEcCCcCc--------CCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 468999999998765 78999999999999987777899999976543
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=130.99 Aligned_cols=112 Identities=29% Similarity=0.487 Sum_probs=88.0
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCC
Q 004109 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHG 439 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~ 439 (773)
|+|.|++|+||+.. +.+||||+++++++ +.+|+++++ .||.|||+|.|.+... ...|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999853 67999999999885 479999999 9999999999999863 457788888876543
Q ss_pred CCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
++..+|++.|. .+..+.....||+|...+..+ +..|+|+|+++|
T Consensus 74 -------~~~~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 74 -------RDIVIGKVALS--KLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred -------CeeEEEEEEec--CcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 56667766554 454566778999997654422 457999999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=134.21 Aligned_cols=92 Identities=21% Similarity=0.298 Sum_probs=80.5
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-------CeeeeeeeccCCCCCccccEEEEEEeCC-----CceEE
Q 004109 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-------QKWVRTRTIIDSPTPKWNEQYTWEVFDP-----CTVIT 428 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-------~~~~~T~~~~~t~~P~wne~~~f~v~~~-----~~~l~ 428 (773)
.+.|.|.|++|++|+.+ +..+.+||||+|.+. ....||+++++++||+|||.|.|++... ...|.
T Consensus 15 ~~~L~V~Vi~A~~L~~~---~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 15 EQSLRVEILNARNLLPL---DSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred CCEEEEEEEEeeCCCCc---CCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 47899999999999987 445789999999985 3468999999999999999999998752 46899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecCcccc
Q 004109 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET 463 (773)
Q Consensus 429 v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 463 (773)
|+|||++.++ +|++||++.++|+++..
T Consensus 92 ~~V~d~d~~~--------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 92 FTVKDYDLLG--------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEecCCCC--------CCcEeEEEEEeHHHCCc
Confidence 9999999875 79999999999999863
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=134.39 Aligned_cols=102 Identities=27% Similarity=0.401 Sum_probs=89.0
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDN 434 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~ 434 (773)
+.|+|.|++|+||+.. +..+.+||||++.+.+ ...+|++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPM---DPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCc---CCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 7899999999999876 4457899999999953 568999999999999999999998764 56899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
+..+ ++++||++.++++++... ....||+|.+
T Consensus 90 ~~~~--------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 90 DRTT--------RNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCCC--------CcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8765 789999999999999754 5678999976
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=134.17 Aligned_cols=105 Identities=25% Similarity=0.301 Sum_probs=87.4
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C---eeeeeeeccCCCCCccccEEEEEEeCC---CceEEE
Q 004109 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITI 429 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 429 (773)
.++.|.|.|.|++|+||+.+ +..|.+||||++.++ + ...+|+++++++||.|||.|.|++... ...|.|
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred cCCCCeEEEEEEEeeCCCcc---cCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 45568999999999999987 456889999999984 2 346899999999999999999998643 348999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 430 ~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
+|||++.++ +|++||++.|++... +....+|+++..
T Consensus 88 ~v~d~~~~~--------~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 88 TVLDYDRIG--------KNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EEEeCCCCC--------CCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 999999876 789999999999864 445678888754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-15 Score=137.70 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=86.0
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--Ce---eeeeeeccCCCCCccccEEEEEEeC---CCceEEEEEE
Q 004109 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--QK---WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVF 432 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~~---~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~ 432 (773)
.+.|.|.|++|+||+.. +..|.+||||++.+. ++ ..||+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 14 TNRLTVVVLKARHLPKM---DVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred CCeEEEEEEEeeCCCcc---ccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 47899999999999987 455889999999983 32 4689999999999999999999874 3567999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
|+|.++ ++++||++.+++.. .+....+|++|..
T Consensus 91 d~d~~~--------~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 91 DSDRVT--------KNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred ECCCCC--------CCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 999876 78999999999998 3455678888854
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-15 Score=137.50 Aligned_cols=115 Identities=23% Similarity=0.338 Sum_probs=92.7
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--CC
Q 004109 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQ 97 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~--~~ 97 (773)
..+++.|. +..+.|+|+|++|++|+..+..|.+||||++++.+ .+++|++++++.||.|||+|.|.+.. ..
T Consensus 3 l~~~~~y~--~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~ 80 (134)
T cd08403 3 LMFSLCYL--PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD 80 (134)
T ss_pred EEEEEEEc--CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence 45666666 56689999999999999999889999999999842 35789999999999999999999843 33
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004109 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
...|.|+|||++.. ++++||++.+++.... .....|+++....+
T Consensus 81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~-------~~~~~w~~~~~~~~ 125 (134)
T cd08403 81 NVSLIIAVVDYDRVGHNELIGVCRVGPNADG-------QGREHWNEMLANPR 125 (134)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEECCCCCC-------chHHHHHHHHHCCC
Confidence 45799999999988 8999999999876221 12457777766544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=130.68 Aligned_cols=114 Identities=17% Similarity=0.303 Sum_probs=87.9
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCC-CCeeecEEEEEecCC-CCc
Q 004109 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKT-NPEWNQVFAFSKDRI-QSS 99 (773)
Q Consensus 27 ~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~-nP~WnE~f~f~v~~~-~~~ 99 (773)
+.++.-+.+..+.|.|+|++|+||++.+..+.+||||+|.+-. .++||++++++. ||+|||+|.|++... ..-
T Consensus 3 l~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v 82 (135)
T cd08692 3 LQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGI 82 (135)
T ss_pred EEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhee
Confidence 4445555588889999999999999875566789999999843 478899999985 699999999999532 345
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004109 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
.|.|+|||.+.. ++++||.+.+........ ...+|.++...
T Consensus 83 ~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~------~~~hW~~m~~~ 124 (135)
T cd08692 83 QFLIKLYSRSSVRRKHFLGQVWISSDSSSSE------AVEQWKDTIAN 124 (135)
T ss_pred EEEEEEEeCCCCcCCceEEEEEECCccCCch------hhhhHHHHHhC
Confidence 788899999887 999999999998753211 13466665443
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-15 Score=154.77 Aligned_cols=103 Identities=26% Similarity=0.466 Sum_probs=91.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeecccCCCCCccccceEEEEeeCC-CCCeEEEEEEEccCC
Q 004109 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLG-----NQALRTRVSASRTINPMWNEDLMFVAAEP-FEEHLILTVEDRVAP 274 (773)
Q Consensus 201 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~kT~~~~~~t~nP~wne~f~f~~~~~-~~~~l~i~V~d~~~~ 274 (773)
.|+|+|.+|+||.++|.+|.+||||++++- ..++||++++. ++||+|||+|+|.+... .+.+|.|+|||||..
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEeccccc
Confidence 699999999999999999999999999994 25789999987 99999999999998654 356899999999999
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceEEEcccC
Q 004109 275 NKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (773)
Q Consensus 275 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~ 309 (773)
++++++|+.++.+++|.. ...+.||.|...
T Consensus 260 sRNDFMGslSFgisEl~K-----~p~~GWyKlLsq 289 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQK-----APVDGWYKLLSQ 289 (683)
T ss_pred ccccccceecccHHHHhh-----cchhhHHHHhhh
Confidence 999999999999999984 347889988765
|
|
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-14 Score=132.59 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=83.6
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC---eeeeeeeccCCCCCccccEEEEEEeCC---CceEEE
Q 004109 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITI 429 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 429 (773)
.+..|.|.|.|++|++|+.+ +..|.+||||++.+ ++ ...+|++++++.||.|||.|.|.+... ...|.|
T Consensus 10 ~~~~~~L~V~vi~a~~L~~~---d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~ 86 (135)
T cd08410 10 LPSAGRLNVDIIRAKQLLQT---DMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVF 86 (135)
T ss_pred CCCCCeEEEEEEEecCCCcc---cCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEE
Confidence 34558999999999999987 44578999999997 22 347999999999999999999998642 347999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 430 ~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
+|||+|..+ ++++||++.|+...... ....+|+.|..
T Consensus 87 ~V~d~d~~~--------~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 87 TVYGHNVKS--------SNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EEEeCCCCC--------CCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 999998765 89999999877644332 22466777754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.1e-15 Score=137.21 Aligned_cols=116 Identities=29% Similarity=0.434 Sum_probs=96.7
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeeccCCCCCCeeecEEEEEecCC--C
Q 004109 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-----KGTTRHFEKKTNPEWNQVFAFSKDRI--Q 97 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-----~~~T~~~~~~~nP~WnE~f~f~v~~~--~ 97 (773)
..++..|+ +..+.|.|+|++|+||+..+..+.+||||++++.+. +++|+++.++.||.|||+|.|.+... .
T Consensus 3 i~~~l~y~--~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~ 80 (134)
T cd00276 3 LLLSLSYL--PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE 80 (134)
T ss_pred EEEEEEee--CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence 45666676 445699999999999999888889999999999652 57899999999999999999998643 3
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC
Q 004109 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD 149 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 149 (773)
...|.|+|||.+.. ++++||.+.+++.+ . .....+|++|.+..++
T Consensus 81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-~------~~~~~~W~~l~~~~~~ 126 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEVIGQVVLGPDS-G------GEELEHWNEMLASPRK 126 (134)
T ss_pred CcEEEEEEEecCCCCCCceeEEEEECCCC-C------CcHHHHHHHHHhCCCC
Confidence 57899999999987 89999999999998 2 2235789999887543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=129.05 Aligned_cols=111 Identities=29% Similarity=0.487 Sum_probs=87.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCC--CCceEEEEEEeCCCC-CCee
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRI--QSSVLEVTVKDKDFV-KDDF 115 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~--~~~~l~i~V~d~~~~-~d~~ 115 (773)
|.|+|++|+||+.. +.+||||+++++++ .++|+++++ .||.|||+|.|.+... ....|.|.+||.+.. ++..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999876 78999999999985 479999988 9999999999998642 245678888988766 6677
Q ss_pred eEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC-CceeeEEEEEEEE
Q 004109 116 MGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAVWM 161 (773)
Q Consensus 116 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~ 161 (773)
+|.+.++.... + .....||+|....+ ....|+|++.++|
T Consensus 78 ~g~v~l~~~~~--~-----~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSKLDL--G-----QGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecCcCC--C-----CcceeEEECccCCCCCCcCceEEEEEEC
Confidence 77766554333 2 23579999987653 3457999998864
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=134.68 Aligned_cols=102 Identities=30% Similarity=0.503 Sum_probs=88.4
Q ss_pred ccCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------EEEEeecccCCCCC
Q 004109 195 LSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----------------------------QALRTRVSASRTIN 245 (773)
Q Consensus 195 ~~p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----------------------------~~~kT~~~~~~t~n 245 (773)
..|..+.|+|+|++|++|..+|.+|.+||||++.++. +.++|+++++ +.|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tln 101 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLN 101 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCC
Confidence 3577899999999999999999999999999999963 2367888776 999
Q ss_pred ccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeEEEEEeccccccccCCCCCCceEEEc
Q 004109 246 PMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306 (773)
Q Consensus 246 P~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L 306 (773)
|.|||+|.|.+.+.....|.|+|||++ +++||++.++++++.. .....||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-----~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-----CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-----CCCCCeEeC
Confidence 999999999997766778999999986 8899999999999872 236899986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-15 Score=151.65 Aligned_cols=225 Identities=21% Similarity=0.309 Sum_probs=172.0
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEe--c-CC
Q 004109 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSK--D-RI 96 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v--~-~~ 96 (773)
.++...|+-+.. .+..+|..|++|++++..+..|||++..+.. .+.+|++..++.||.|||+..... . +.
T Consensus 82 ~~~~~~y~~~~~--~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~ 159 (362)
T KOG1013|consen 82 LEFELLYDSESR--MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDT 159 (362)
T ss_pred hhhhhhhhhhhh--hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchh
Confidence 456666665554 7899999999999999999999999999975 468899999999999999865543 2 23
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC------CCceeeEEEEEEEEeccCCCCC
Q 004109 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK------GDKVRGELMLAVWMGTQADEAF 169 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~------~~~~~G~i~l~~~~~~~~d~~~ 169 (773)
....+++.|.|.+.+ .+++.|+..+++..+..... .....|+.-..+. ..+.+|+|.+++.|.+.
T Consensus 160 ~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~---k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~----- 231 (362)
T KOG1013|consen 160 HLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQR---KSFNICLEKSLPSERADRDEDEERGAILISLAYSST----- 231 (362)
T ss_pred hhhhhheeeccCcccccccCcccchhhhhccChhhc---chhhhhhhccCCcccccccchhhccceeeeeccCcC-----
Confidence 356778899998888 88999999999888875432 2234454332221 11346777777644321
Q ss_pred CcccccccccccccccccccccceeccCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeecccCCCC
Q 004109 170 PEAWHSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTRVSASRTI 244 (773)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~ 244 (773)
...+.|+++.|.+|..+|.++.+||||+.++.. -+.||.+.++ +.
T Consensus 232 -----------------------------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~ 281 (362)
T KOG1013|consen 232 -----------------------------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TL 281 (362)
T ss_pred -----------------------------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cC
Confidence 124889999999999999999999999999862 3567888776 99
Q ss_pred CccccceEEEEeeCC--CCCeEEEEEEEccCCCCCceeEEEEEeccc
Q 004109 245 NPMWNEDLMFVAAEP--FEEHLILTVEDRVAPNKDEVLGKCMIPLQY 289 (773)
Q Consensus 245 nP~wne~f~f~~~~~--~~~~l~i~V~d~~~~~~d~~iG~~~i~L~~ 289 (773)
+|.||+.|.|.+... ....+.|.|||++..+..+.+|-+...+..
T Consensus 282 ~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 282 NPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred CccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccc
Confidence 999999999988543 355899999999888788999987665543
|
|
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.6e-14 Score=129.16 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=92.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 440 (773)
..|.|+|++|+ |... +..+.+||||++.++++ ..+|++++++.||.|||.|.|.+. ....|.|+|||++..+
T Consensus 2 ~~L~V~i~~a~-l~~~---~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~-- 74 (125)
T cd04021 2 SQLQITVESAK-LKSN---SKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK-- 74 (125)
T ss_pred ceEEEEEEeeE-CCCC---CcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC--
Confidence 36899999998 5443 33578999999999988 899999999999999999999985 4679999999998875
Q ss_pred CCCCCCCCCccEEEEEecCccccCC---e--EEeeEEeEeecCCCcccccEEEEEE
Q 004109 441 DKAGGARDSRIGKVRIRLSTLETDR---V--YTHSYPLLVLYPNGVKKMGEIHLAV 491 (773)
Q Consensus 441 ~~~~~~~d~~lG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~g~~~~G~v~l~~ 491 (773)
+|++||++.++|+++..+. . +..|+++........+..|.|.+.+
T Consensus 75 ------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ------ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred ------CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 7899999999999986432 1 3458888754421224468888765
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-14 Score=129.21 Aligned_cols=115 Identities=23% Similarity=0.383 Sum_probs=95.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCC-C----
Q 004109 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDF-V---- 111 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~-~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~-~---- 111 (773)
..|.|.|++|++|++.+ +|||.+.++++. .||+++.++.||.|+|.|.|..... ...|.|.||+.+. .
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcccccc
Confidence 47999999999998765 899999999976 6999999999999999999975433 4679999976543 2
Q ss_pred CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC---------ceeeEEEEEEEEec
Q 004109 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD---------KVRGELMLAVWMGT 163 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~---------~~~G~i~l~~~~~~ 163 (773)
++.+||++.|++.++..+ ...++||+|....+. ...+.|++++.|.+
T Consensus 85 ~~~~IG~V~Ip~~~l~~~-----~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSR-----QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CCcEEEEEEEEHHHhcCC-----CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 579999999999999854 346899999998754 23479999998875
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=128.77 Aligned_cols=101 Identities=28% Similarity=0.435 Sum_probs=86.1
Q ss_pred CCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEcCccCCCCCCC
Q 004109 55 VTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPD 133 (773)
Q Consensus 55 ~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~ 133 (773)
.+|.+||||+++++++ ..+|++++++.||+|||.|.|.+.+.....|.|+|+|.+..++++||++.++|.++...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~---- 84 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDA---- 84 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhh----
Confidence 3688999999999885 57999999999999999999999876678899999999887899999999999999654
Q ss_pred CCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004109 134 SPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 134 ~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
......||+|.+. ..|+|++++.|.+
T Consensus 85 ~~~~~~w~~L~~~----~~G~i~~~~~~~p 110 (111)
T cd04052 85 TSVGQQWFPLSGN----GQGRIRISALWKP 110 (111)
T ss_pred hhccceeEECCCC----CCCEEEEEEEEec
Confidence 2235799999862 3599999988764
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-15 Score=136.59 Aligned_cols=105 Identities=18% Similarity=0.292 Sum_probs=87.9
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC---CceEEE
Q 004109 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITI 429 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 429 (773)
.+..|.|.|+|++|+||+.+ +..|.+||||++.+.+ ...+|+++++++||.|||+|.|.+..+ ...|.|
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~---d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~ 85 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAM---DANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEI 85 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCc---CCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEE
Confidence 34458999999999999987 4457899999999843 357999999999999999999998753 468999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 430 ~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
+|||++..+ ++++||.+.+++.. .+....+||++..
T Consensus 86 ~V~d~d~~~--------~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 86 TVWDKDIGK--------SNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEEeCCCCC--------CccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999998765 78999999999986 3445578998854
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=131.04 Aligned_cols=105 Identities=14% Similarity=0.246 Sum_probs=85.1
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC------eeeeeeeccCCCCCccccEEEEEEeC---CCceEE
Q 004109 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVIT 428 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~ 428 (773)
.+..+.|.|.|++|+||+.+ +..|.+||||++.+.+ .+.||++++++.||+|||+|.|++.. ....|.
T Consensus 11 ~~~~~~L~V~VikarnL~~~---~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~ 87 (138)
T cd08408 11 NALTGRLSVEVIKGSNFKNL---AMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLM 87 (138)
T ss_pred cCCCCeEEEEEEEecCCCcc---ccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEE
Confidence 34558999999999999987 5567899999998832 24699999999999999999999874 356999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004109 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 429 v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
|.|||.+.++ ++++||.+.+++..... ....+|+.+.
T Consensus 88 ~~V~~~~~~~--------~~~~iG~v~l~~~~~~~-~~~~hW~~~l 124 (138)
T cd08408 88 FSVYNKRKMK--------RKEMIGWFSLGLNSSGE-EEEEHWNEMK 124 (138)
T ss_pred EEEEECCCCC--------CCcEEEEEEECCcCCCc-hHHHHHHHHH
Confidence 9999998765 89999999999875432 1235676664
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=131.98 Aligned_cols=103 Identities=25% Similarity=0.401 Sum_probs=84.0
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeecccCCCCCccccceEEEEeeCC--CCCeEEEEEEEcc
Q 004109 200 WYLRVNVIEAQDLQPTDKGRFPEVYVKAQLG--N---QALRTRVSASRTINPMWNEDLMFVAAEP--FEEHLILTVEDRV 272 (773)
Q Consensus 200 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~~ 272 (773)
+.|.|+|++|++|...+..+.+||||++.+. + .+.+|+++++ +.||.|||.|.|.+... .+..|.|+|||++
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 4799999999999998888999999999983 2 3578998876 99999999999987532 3458999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceEEEcccC
Q 004109 273 APNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (773)
Q Consensus 273 ~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~ 309 (773)
..+++++||++.+++.+... ...+|+.+...
T Consensus 94 ~~~~~~~lG~~~i~~~~~~~------~~~~w~~~~~~ 124 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSGGL------ELKHWKDMLSK 124 (136)
T ss_pred CCCCCcEeEEEEECCccCCc------hHHHHHHHHhC
Confidence 98899999999999987521 24556655443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.56 E-value=6e-14 Score=128.88 Aligned_cols=116 Identities=27% Similarity=0.446 Sum_probs=97.4
Q ss_pred eEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeeeeccCCCC-CCeeecEEEEEecCCCCceEEEEEEeC
Q 004109 38 QYLYVRVVKAKDLPPKD--VTGSCDPYVEVKMG------NYKGTTRHFEKKT-NPEWNQVFAFSKDRIQSSVLEVTVKDK 108 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d--~~~~~dpyv~v~~~------~~~~~T~~~~~~~-nP~WnE~f~f~v~~~~~~~l~i~V~d~ 108 (773)
..|+|+|++|+||+..+ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+.......|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36999999999999887 47789999999994 4568999987765 999999999998765567899999999
Q ss_pred CCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC-ceeeEEEEEEEE
Q 004109 109 DFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWM 161 (773)
Q Consensus 109 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~ 161 (773)
+..++++||.+.+++.++..+ ..|++|.+..|. ...|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 877899999999999999532 378999988765 456899888764
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-14 Score=134.90 Aligned_cols=105 Identities=18% Similarity=0.334 Sum_probs=86.4
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC---CceEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~ 430 (773)
+..+.|.|.|++|+||+.+ + .+.+||||++.+.+ .+.||++++++.||.|||.|.|.+... ...|.|+
T Consensus 12 ~~~~~L~V~V~~a~nL~~~---~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~ 87 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQL---D-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLS 87 (137)
T ss_pred CCCCeEEEEEEEecCCCcc---c-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEE
Confidence 3447999999999999987 3 46799999999843 356999999999999999999998632 4689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
|+|.+..+ ++++||++.|+......+....+|..+..
T Consensus 88 V~~~~~~~--------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 88 VMQSGGVR--------KSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EEeCCCCC--------CcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 99998765 78999999999776666666677777644
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-14 Score=128.03 Aligned_cols=105 Identities=29% Similarity=0.444 Sum_probs=88.3
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEe-c--
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSK-D-- 94 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v-~-- 94 (773)
|...+++.|+ +..+.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||.|||+|.|.. .
T Consensus 2 G~~~~~l~y~--~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 2 GTLEFTLLYD--PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred cEEEEEEEEe--CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 3456666776 55578999999999999888888999999999842 468999999999999999999963 2
Q ss_pred CCCCceEEEEEEeCCCCCCeeeEEEEEEcCccCCC
Q 004109 95 RIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKR 129 (773)
Q Consensus 95 ~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~ 129 (773)
+.....+.|+|||.+..++++||++.++++++..+
T Consensus 80 ~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 80 DIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPN 114 (123)
T ss_pred HhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCC
Confidence 23457899999999877889999999999999865
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=127.76 Aligned_cols=99 Identities=24% Similarity=0.312 Sum_probs=84.1
Q ss_pred CCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecC
Q 004109 382 GRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLS 459 (773)
Q Consensus 382 ~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~ 459 (773)
..|.+||||++.++++ ..+|++++++.||.|||.|.|.+.++ ...|.|.|+|++.+ +|++||++.++|+
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~---------~d~~iG~~~v~L~ 79 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR---------HDPVLGSVSISLN 79 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC---------CCCeEEEEEecHH
Confidence 3578999999999885 57999999999999999999999875 67899999999865 4899999999999
Q ss_pred cccc-CCeEEeeEEeEeecCCCcccccEEEEEEEEee
Q 004109 460 TLET-DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 460 ~l~~-~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
++.. +.....||+|.. ...|+|+++++|.|
T Consensus 80 ~l~~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 80 DLIDATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred HHHhhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 9843 445678999953 24599999999866
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.6e-14 Score=129.44 Aligned_cols=104 Identities=24% Similarity=0.300 Sum_probs=84.8
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C---eeeeeeeccCCCCCccccEEEEEEeCC---CceEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~ 430 (773)
+..|.|+|.|++|++|+.+ +..|.+||||++.+. + ...+|+++++++||.|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~v~~A~~L~~~---d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~ 87 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAM---DITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIA 87 (134)
T ss_pred CCCCEEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 4458999999999999987 455889999999983 2 256999999999999999999998642 3479999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
|||++.++ ++++||++.|++... +....+|+++..
T Consensus 88 v~d~~~~~--------~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 88 VVDYDRVG--------HNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred EEECCCCC--------CCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 99999876 799999999998743 344567877754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.7e-14 Score=127.57 Aligned_cols=118 Identities=22% Similarity=0.263 Sum_probs=89.8
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-------------eeeeeeeccCCCCCcc-ccEEEEEEeCCCceEE
Q 004109 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-------------KWVRTRTIIDSPTPKW-NEQYTWEVFDPCTVIT 428 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-------------~~~~T~~~~~t~~P~w-ne~~~f~v~~~~~~l~ 428 (773)
.+.|.+++|+||+ . +..|.+||||++.+.+ +..+|+++++++||+| ||.|.|.+. +.+.|.
T Consensus 2 ~~~~~~~~A~~L~-~---~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~ 76 (137)
T cd08691 2 SFSLSGLQARNLK-K---GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLE 76 (137)
T ss_pred EEEEEEEEeCCCC-C---ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEE
Confidence 4679999999997 4 4458999999999842 3689999999999999 999999985 467899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccC---CeEEeeEEeEeecCCCcccccEEEEEE
Q 004109 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD---RVYTHSYPLLVLYPNGVKKMGEIHLAV 491 (773)
Q Consensus 429 v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~g~~~~G~v~l~~ 491 (773)
|+|||++..+ + ...+++||++.|+++++..+ .....||+|......+ .-.|++.+.+
T Consensus 77 v~V~D~~~~~---~--~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s-~v~G~~~l~~ 136 (137)
T cd08691 77 IEVKDKFAKS---R--PIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTD-HVSGQLTFRF 136 (137)
T ss_pred EEEEecCCCC---C--ccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCC-cEEEEEEEEe
Confidence 9999976432 0 01278999999999999654 3456789886433222 2358777654
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-14 Score=133.63 Aligned_cols=104 Identities=24% Similarity=0.335 Sum_probs=88.4
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-----eeeeeeccCCCCCccccEEEEEEeCC---CceEEEEE
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-----WVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGV 431 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v 431 (773)
..+.|.|.|++|+||+.. +..+.+||||++.+.+. ..+|+++.++.||.|||+|.|.+... ...|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 12 TAERLTVVVLKARNLPPS---DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred CCCEEEEEEEEeeCCCCc---cCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 347999999999999976 44578999999998542 46999999999999999999998764 57899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEee
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 476 (773)
||.+..+ ++++||.+.+++++ .+....+|++|...
T Consensus 89 ~d~~~~~--------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 89 VDKDSVG--------RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred EecCCCC--------CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 9998764 78999999999999 56667889998653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-14 Score=176.64 Aligned_cols=119 Identities=24% Similarity=0.464 Sum_probs=103.5
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCCC--ceEEEEEEeCC
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPC--TVITIGVFDNC 435 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~--~~l~v~v~d~~ 435 (773)
.-.|.|.|+|++|+||. +..|++||||++++|++ +.||++++++.||+|||+|+|.+.+|. +.|+|+|||+|
T Consensus 1977 ~~~G~L~V~V~~a~nl~-----~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK-----QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hCCcceEEEEeeccccc-----cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 45799999999999996 22478999999999965 789999999999999999999999974 78999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccE---EEEEEEEee
Q 004109 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGE---IHLAVRFTC 495 (773)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---v~l~~~~~~ 495 (773)
.++ ++.||++.|++.++..++.++.||+|.. +| +|.|+ ++++++|++
T Consensus 2052 ~f~---------kd~~G~~~i~l~~vv~~~~~~~~~~L~~---~~-~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2052 TFG---------KSSLGKVTIQIDRVVMEGTYSGEYSLNP---ES-NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ccC---------CCCCceEEEEHHHHhcCceeeeeeecCc---cc-ccCCCcceEEEEEEecC
Confidence 885 4599999999999999999999999974 22 35577 999888853
|
|
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=119.85 Aligned_cols=98 Identities=27% Similarity=0.483 Sum_probs=72.1
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 004109 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~ 438 (773)
|.|.|++|+||+ +.+||||++.+++ ...||+++++|+||+|||+|.|++.. ...|.+.|||++.-.
T Consensus 1 L~V~V~~A~~L~--------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK--------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC--------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccc
Confidence 579999999995 4599999998853 35899999999999999999999864 779999999984100
Q ss_pred -CCCCCCCCCCCccEEEEEecC--ccccCCeEEeeEE
Q 004109 439 -GGDKAGGARDSRIGKVRIRLS--TLETDRVYTHSYP 472 (773)
Q Consensus 439 -~~~~~~~~~d~~lG~~~i~l~--~l~~~~~~~~~~~ 472 (773)
..+ +.++|+++|++.|.|+ .+....+....+.
T Consensus 72 ~~~d--~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~ 106 (118)
T cd08686 72 VKLD--GEGTDAIMGKGQIQLDPQSLQTKKWQEKVIS 106 (118)
T ss_pred cccc--ccCcccEEEEEEEEECHHHhccCCeeEEEEE
Confidence 000 1137999988777764 3444443333333
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=125.68 Aligned_cols=89 Identities=28% Similarity=0.413 Sum_probs=80.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEE--EEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCce
Q 004109 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA--LRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEV 279 (773)
Q Consensus 202 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~ 279 (773)
|+|.|++|++|+..+..+.+||||++.++++. .+|+++++ +.||.|||+|.|.+..+....|.|+|||++..++|++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 78999999999999998999999999999865 56777776 9999999999999877777899999999999899999
Q ss_pred eEEEEEeccccc
Q 004109 280 LGKCMIPLQYVD 291 (773)
Q Consensus 280 iG~~~i~L~~l~ 291 (773)
||++.+++++..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999999764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=123.77 Aligned_cols=99 Identities=24% Similarity=0.386 Sum_probs=81.6
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CeeeeeeeccCCCCCccccEEEEEEeCC----CceEEEEE
Q 004109 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGV 431 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v 431 (773)
.+.|+|.|++|++|+.. +..+.+||||++.+. ....||++++++.||.|||.|.|..... ...+.|+|
T Consensus 14 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 14 NSALHCTIIRAKGLKAM---DANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred CCEEEEEEEEeeCCCCC---CCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 47899999999999876 445789999999883 2468999999999999999999974432 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeE
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSY 471 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 471 (773)
||++.+ ++++||++.++++++..+.....++
T Consensus 91 ~d~~~~---------~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 91 LDEDRF---------GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EEcCCc---------CCeeEEEEEEEcccCCCCcceEeec
Confidence 999764 4789999999999998776444443
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.8e-14 Score=125.66 Aligned_cols=97 Identities=16% Similarity=0.229 Sum_probs=82.6
Q ss_pred EEEEccCCCCCccCCCCCCCCcEEEEEECCe-------eeeeeeccCCCCCccccEEEEEEeC-CCceEEEEEEeCCC--
Q 004109 367 GILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-------WVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCH-- 436 (773)
Q Consensus 367 ~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~-- 436 (773)
..++|++|+.. +..|.+||||++.+.+. ..||+++++++||.|||.|.|.+.. ....|.|+|||+|.
T Consensus 5 ~~i~a~~L~~~---d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDK---DVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCC---CCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 34789999987 44578999999999654 3899999999999999999998753 46789999999986
Q ss_pred --CCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004109 437 --LHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 437 --~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
.+ ++++||++.++++++..+.....|++|.
T Consensus 82 ~~~~--------~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 82 KDLS--------DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCC--------CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 44 7899999999999998777677888883
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=155.80 Aligned_cols=104 Identities=20% Similarity=0.368 Sum_probs=89.6
Q ss_pred CCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEcCccCCCCCCCCC
Q 004109 57 GSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSP 135 (773)
Q Consensus 57 ~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 135 (773)
+++||||+|.++++ +.||++++++.||+|||+|.|.+.+. ...|.|+|||.|.+++++||++.|+|.++..+.
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge----- 148 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGE----- 148 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCC-----
Confidence 47899999999886 56999999999999999999999875 468999999999998899999999999998763
Q ss_pred CcCeEEEeeeCCCCc--eeeEEEEEEEEeccCC
Q 004109 136 LAPQWYRLEDRKGDK--VRGELMLAVWMGTQAD 166 (773)
Q Consensus 136 ~~~~w~~L~~~~~~~--~~G~i~l~~~~~~~~d 166 (773)
....|++|.+..++. ..|+|+++++|.+...
T Consensus 149 ~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 149 RISGWFPVLGASGKPPKAETAIFIDMKFTPFDQ 181 (868)
T ss_pred ceEEEEEccccCCCCCCCCcEEEEEEEEEEccc
Confidence 357999999987653 3579999999987543
|
|
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=125.01 Aligned_cols=97 Identities=25% Similarity=0.310 Sum_probs=82.9
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCC----C-
Q 004109 44 VVKAKDLPPKDVTGSCDPYVEVKMGNY-------KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDF----V- 111 (773)
Q Consensus 44 v~~a~~L~~~d~~~~~dpyv~v~~~~~-------~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~----~- 111 (773)
.++|++|+..+..+.+||||++.+.+. .++|++++++.||+|||+|.|.+.....+.|.|+|||++. .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 588999999998899999999999775 3899999999999999999998654346789999999996 6
Q ss_pred CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeee
Q 004109 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (773)
++++||++.+++.+|.... ....|++|..
T Consensus 86 ~~d~iG~~~i~l~~l~~~~-----~~~~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSP-----GQKLTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCC-----CcEEEEEccC
Confidence 9999999999999998643 2456888844
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=120.85 Aligned_cols=78 Identities=28% Similarity=0.438 Sum_probs=67.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeC------
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDK------ 108 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~------ 108 (773)
|.|+|.+|+||+ +.+||||++.+++ .+.+|+++++|+||+|||+|.|.+.. ...|.+.|||.
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 689999999996 4589999999964 35899999999999999999999974 67999999997
Q ss_pred -CCC-CCeeeEEEEEEcC
Q 004109 109 -DFV-KDDFMGRVLFDLN 124 (773)
Q Consensus 109 -~~~-~d~~lG~~~i~l~ 124 (773)
|.. +|+++|.+.+.|.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 344 8999988888765
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-13 Score=123.02 Aligned_cols=117 Identities=21% Similarity=0.351 Sum_probs=92.7
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEE------CCeeeeeeeccCCC-CCccccEEEEEEeCCC-ceEEEEEEeC
Q 004109 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKY------GQKWVRTRTIIDSP-TPKWNEQYTWEVFDPC-TVITIGVFDN 434 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~------~~~~~~T~~~~~t~-~P~wne~~~f~v~~~~-~~l~v~v~d~ 434 (773)
.|+|+|++|+||+.++. +..+.+||||++++ +....||+++.++. ||.|||+|.|.+..+. ..|.++|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 68999999999998742 13578999999999 34568999988876 9999999999998764 6799999998
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+.. ++++||++.++++++..+ ..|++|....... ...|.|.+.+++
T Consensus 82 ~~~---------~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG---------DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CCC---------CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCC-CcceeEEEEEEE
Confidence 764 578999999999999765 3678887643321 234788877765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-13 Score=168.71 Aligned_cols=121 Identities=18% Similarity=0.329 Sum_probs=101.2
Q ss_pred ccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCC-CceEEEEEEeCCC
Q 004109 33 LVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQ-SSVLEVTVKDKDF 110 (773)
Q Consensus 33 ~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~-~~~l~i~V~d~~~ 110 (773)
++.-+|.|.|+|++|+||. +..+++||||+++++++ +.||++++++.||+|||+|.|.++++. .+.|.|+|||+|.
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 3466899999999999998 33689999999999975 889999999999999999999997764 4679999999999
Q ss_pred CCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeE---EEEEEEEe
Q 004109 111 VKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGE---LMLAVWMG 162 (773)
Q Consensus 111 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~---i~l~~~~~ 162 (773)
++++.||.++|++.++..++ ....||+|.+...+ .|. |.+.+.+.
T Consensus 2053 f~kd~~G~~~i~l~~vv~~~-----~~~~~~~L~~~~~k--~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2053 FGKSSLGKVTIQIDRVVMEG-----TYSGEYSLNPESNK--DGSSRTLEIEFQWS 2100 (2102)
T ss_pred cCCCCCceEEEEHHHHhcCc-----eeeeeeecCccccc--CCCcceEEEEEEec
Confidence 96779999999999999754 36789999964221 355 88876554
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=116.53 Aligned_cols=86 Identities=26% Similarity=0.414 Sum_probs=74.7
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEECCe------eeeeeccCCCCCCeeecEEEEEecCCC----CceEEEEEEeCCCC-
Q 004109 43 RVVKAKDLPPKDVTGSCDPYVEVKMGNY------KGTTRHFEKKTNPEWNQVFAFSKDRIQ----SSVLEVTVKDKDFV- 111 (773)
Q Consensus 43 ~v~~a~~L~~~d~~~~~dpyv~v~~~~~------~~~T~~~~~~~nP~WnE~f~f~v~~~~----~~~l~i~V~d~~~~- 111 (773)
-.++|++|+..+..+.+||||++++.+. .++|++++++.||+|| +|.|.+.++. ...|.|+|||++..
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 3679999999998899999999998653 5899999999999999 7888764332 57899999999998
Q ss_pred CCeeeEEEEEEcCccCCC
Q 004109 112 KDDFMGRVLFDLNEIPKR 129 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~ 129 (773)
+|++||++.+++.++...
T Consensus 84 ~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 84 KHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCcEEEEEEEEHHHHhcC
Confidence 999999999999999844
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-12 Score=138.87 Aligned_cols=180 Identities=26% Similarity=0.376 Sum_probs=126.9
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHH---HHhhhhcccCCchhHHHHHHHHHHHHHccchh---HHHHHHHHHHHHhhcc
Q 004109 560 HMWSMRRSKANFFRIMGVLSGIIAVG---KWFDQICNWKNPITTVLIHILFIILVLYPELI---LPTVFLYLFLIGVWYY 633 (773)
Q Consensus 560 ~~~s~~~~~~n~~Rl~~~~~~~~~~~---~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l~---~p~~~l~l~~~~~~~~ 633 (773)
+.+|+..+..|+.|+.+.+..++.++ +.+.++++|++|..|..++++|+++|++|.+. +|++++. +++++..|
T Consensus 1 p~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll-~~il~~~y 79 (359)
T PF06398_consen 1 PPLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLL-FGILLPSY 79 (359)
T ss_pred CCcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 35788899999999999999999999 99999999999999999999999999999883 4544433 34445555
Q ss_pred ccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----hccCC
Q 004109 634 RWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQS----LLSWR 709 (773)
Q Consensus 634 ~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~n----l~~w~ 709 (773)
..++..+.. .... +..+.+.+.+..|+ +...-..+..+++.+||.|+.+.+.++.+.. +++|+
T Consensus 80 l~~~p~~~~--~~~~-----~~~~~~~~~~~~pt------l~~~s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f~ 146 (359)
T PF06398_consen 80 LYRHPSPTS--SLPK-----SYEDHNPEPSEGPT------LDKPSREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNFS 146 (359)
T ss_pred HeecCCCcc--cccc-----cccccCCCcCCCCC------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 444311111 0000 00000011111111 1101234567888999999999999999985 45799
Q ss_pred ChhhHHHHHHHHHHHHHHHh----hhhhhHHHhhhhhh-hccCCccCCC
Q 004109 710 DPRATALFVIFCLIAAIVLY----VTPFQVVALLTGFY-VLRHPRFRHK 753 (773)
Q Consensus 710 ~p~~t~~~~~~l~~~~~~~~----~vP~r~i~l~~g~~-~~~~P~~r~~ 753 (773)
++..|.+++.+|+++.+.++ ++|+|++++++|.. .+.||..++.
T Consensus 147 ~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~~ 195 (359)
T PF06398_consen 147 DENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQA 195 (359)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHHH
Confidence 99999998888877766544 58999999999944 7889988753
|
Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p []. |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=109.75 Aligned_cols=81 Identities=38% Similarity=0.596 Sum_probs=73.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (773)
|.|+|++|+||+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.......|.|+|||.+.. +|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988788999999999998 569999999999999999999998655666799999999998 7999
Q ss_pred eEEEE
Q 004109 116 MGRVL 120 (773)
Q Consensus 116 lG~~~ 120 (773)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-12 Score=116.41 Aligned_cols=88 Identities=20% Similarity=0.225 Sum_probs=73.3
Q ss_pred EEEEEccCCCCCccCCCCCCCCcEEEEEECCe------eeeeeeccCCCCCccccEEEEEEeC-----CCceEEEEEEeC
Q 004109 366 LGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK------WVRTRTIIDSPTPKWNEQYTWEVFD-----PCTVITIGVFDN 434 (773)
Q Consensus 366 v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~------~~~T~~~~~t~~P~wne~~~f~v~~-----~~~~l~v~v~d~ 434 (773)
+-.++|++|+.+ +..|.+||||++.+.+. .++|+++++++||.|| .|.|++.+ +...|.|+|||+
T Consensus 4 ~~~i~a~~L~~~---d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 4 ELQFSGKKLDKK---DFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEeCCCCCC---CCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEe
Confidence 345689999987 45578999999988543 4899999999999999 78887643 267999999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecCccccCC
Q 004109 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDR 465 (773)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 465 (773)
+..+ +|++||++.++++++..++
T Consensus 80 d~~~--------~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 80 DSSG--------KHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCC--------CCcEEEEEEEEHHHHhcCC
Confidence 9876 7999999999999997554
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-13 Score=134.27 Aligned_cols=220 Identities=18% Similarity=0.236 Sum_probs=161.4
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeecccCCCCCccccceEEEEe--eCC-CCCeEEEEEEEc
Q 004109 200 WYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTRVSASRTINPMWNEDLMFVA--AEP-FEEHLILTVEDR 271 (773)
Q Consensus 200 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~~--~~~-~~~~l~i~V~d~ 271 (773)
..+..+|..|++|.+++.++..|||++..++. .+++|++..+ +.||.|||.-.+.. .+. ....+.+.|.|.
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeeccC
Confidence 35889999999999999999999999999973 4578888876 99999998865533 222 244678888998
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccCcccCCCCCccCCCCCc
Q 004109 272 VAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRP 351 (773)
Q Consensus 272 ~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p 351 (773)
+.....+++|+..+++..+...+. .....|+.-.-+.... ...+.+..|.+.+++.+
T Consensus 172 ~~~~~~~sqGq~r~~lkKl~p~q~--k~f~~cl~~~lp~~ra--d~~~~E~rg~i~isl~~------------------- 228 (362)
T KOG1013|consen 172 DKKTHNESQGQSRVSLKKLKPLQR--KSFNICLEKSLPSERA--DRDEDEERGAILISLAY------------------- 228 (362)
T ss_pred cccccccCcccchhhhhccChhhc--chhhhhhhccCCcccc--cccchhhccceeeeecc-------------------
Confidence 888889999999999888875432 2233454433331111 01122446666666542
Q ss_pred cccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC---
Q 004109 352 TAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP--- 423 (773)
Q Consensus 352 ~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~--- 423 (773)
......+.|.+++|..|..+ |.+|.+||||..++.. .+.+|.+.+++++|.||++|.|.+...
T Consensus 229 ------~s~~~~l~vt~iRc~~l~ss---Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa 299 (362)
T KOG1013|consen 229 ------SSTTPGLIVTIIRCSHLASS---DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLA 299 (362)
T ss_pred ------CcCCCceEEEEEEeeeeecc---ccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchh
Confidence 12235788999999999988 5568999999998843 247999999999999999999988753
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCc
Q 004109 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 424 ~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~ 460 (773)
...+.|.|+|.+.= ...+++|-+...+..
T Consensus 300 ~~kv~lsvgd~~~G--------~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 300 YKKVALSVGDYDIG--------KSNDSIGGSMLGGYR 328 (362)
T ss_pred cceEEEeecccCCC--------cCccCCCcccccccc
Confidence 56899999998752 146788877665443
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-12 Score=139.61 Aligned_cols=126 Identities=29% Similarity=0.422 Sum_probs=102.2
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC--
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG-- 439 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~-- 439 (773)
..+.++|+.|+||.+. |..|++||||.+.+|..+.||+++...+||+|||.|.|++....+.|+|.|||+|.--.
T Consensus 295 akitltvlcaqgl~ak---dktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAK---DKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred eeeEEeeeecccceec---ccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHH
Confidence 6889999999999987 66799999999999999999999999999999999999999999999999999875210
Q ss_pred -CCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 440 -GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 440 -~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
..+-.++.|||||+..|.+..+... ++-||.|.....+. .-.|.|+|.+.+
T Consensus 372 lrqkl~resddflgqtvievrtlsge--mdvwynlekrtdks-avsgairlhisv 423 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDKS-AVSGAIRLHISV 423 (1283)
T ss_pred HHHHhhhcccccccceeEEEEecccc--hhhhcchhhccchh-hccceEEEEEEE
Confidence 0011456899999999999988754 47899996543322 235777766554
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=104.10 Aligned_cols=82 Identities=30% Similarity=0.537 Sum_probs=74.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCc
Q 004109 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGN---QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDE 278 (773)
Q Consensus 202 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~ 278 (773)
|+|+|++|++|...+..+.+||||++.+++ ..++|+++++ +.+|.|||.|.|.+..+..+.|.|+|||++..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999987 6799999877 899999999999987777777999999999988899
Q ss_pred eeEEEE
Q 004109 279 VLGKCM 284 (773)
Q Consensus 279 ~iG~~~ 284 (773)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.7e-12 Score=134.75 Aligned_cols=118 Identities=31% Similarity=0.577 Sum_probs=101.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-------
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV------- 111 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~------- 111 (773)
.++++|+-|.+|.+.|..|++||||.+.++..+.+|++|.+.+||+|||.|.|...+ .++.+.+.|||.|..
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dlksklrq 374 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDLKSKLRQ 374 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999876 368899999998751
Q ss_pred -----CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC-ceeeEEEEEEEEecc
Q 004109 112 -----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWMGTQ 164 (773)
Q Consensus 112 -----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~~~ 164 (773)
+|||+|+..|.++.|... .+.||+|+.+... ...|-|.+.+.+.-.
T Consensus 375 kl~resddflgqtvievrtlsge-------mdvwynlekrtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 375 KLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred HhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhccceEEEEEEEEEc
Confidence 799999999999988643 5689999987643 356888877765443
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=137.38 Aligned_cols=128 Identities=19% Similarity=0.253 Sum_probs=108.0
Q ss_pred ceEEEEEEEccCCCCCcc---------------CCCCCCCCcEEEEEECCee-eeeeeccCC-CCCccccEEEEEEeCCC
Q 004109 362 GVLELGILNAQGLMPMKT---------------KDGRGTTDAYCVAKYGQKW-VRTRTIIDS-PTPKWNEQYTWEVFDPC 424 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~---------------~~~~~~~dpyv~v~~~~~~-~~T~~~~~t-~~P~wne~~~f~v~~~~ 424 (773)
|.|.++|++|++|++++- ..+++.+||||.|.+++.+ .||+++.+. .||.|||.|.+++..+.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 899999999999986310 1234678999999998876 599999884 69999999999999999
Q ss_pred ceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEeecch
Q 004109 425 TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSL 498 (773)
Q Consensus 425 ~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~~~ 498 (773)
+.+.+.|.|.|.++ ..+||++.||..++..|..+++|+++.+.+.+..+...+|+++++|.+...
T Consensus 88 ~~v~f~vkd~~~~g---------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 88 SNIIFTVKDDNPIG---------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred ceEEEEEecCCccC---------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 99999999999985 569999999999999999999999998765443333458999999988654
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-12 Score=142.13 Aligned_cols=89 Identities=25% Similarity=0.416 Sum_probs=80.0
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCee--eeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCC
Q 004109 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW--VRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHL 437 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~--~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~ 437 (773)
.-.++|.|++|.+|.+. |++|..|||+.+.+|++. -+++.+.+|+||+|++.|.+....| ...++|+|||+|..
T Consensus 612 ~~LvrVyvv~A~~L~p~---D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPS---DGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred eeeEEEEEEEeeecccc---CCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 45778999999999887 778999999999999988 4777888999999999999999987 67899999999987
Q ss_pred CCCCCCCCCCCCccEEEEEecCc
Q 004109 438 HGGDKAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~ 460 (773)
+ +|+.||...|+|..
T Consensus 689 ~--------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 A--------QDEKIGETTIDLEN 703 (1105)
T ss_pred c--------ccchhhceehhhhh
Confidence 6 89999999999875
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=105.01 Aligned_cols=94 Identities=19% Similarity=0.219 Sum_probs=78.3
Q ss_pred eEEEEEEEccCCCCCccCCCCC--CCCcEEEEEECC---eeeeeeeccCCCC--CccccEEEEEEeCC------------
Q 004109 363 VLELGILNAQGLMPMKTKDGRG--TTDAYCVAKYGQ---KWVRTRTIIDSPT--PKWNEQYTWEVFDP------------ 423 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~--~~dpyv~v~~~~---~~~~T~~~~~t~~--P~wne~~~f~v~~~------------ 423 (773)
.|+|.|.+|+|++..+.. ..| .+||||++.+.+ ..++|.+.++++| |.||+.|.|++..+
T Consensus 1 eLRViIw~~~~v~~~~~~-~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTN-ITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCcccccc-cCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 378999999997765432 234 599999999954 5689999999999 99999999987652
Q ss_pred ------------CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCC
Q 004109 424 ------------CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR 465 (773)
Q Consensus 424 ------------~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 465 (773)
...|.++|||.|.++ +|++||.+.++|..+..+.
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s--------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFS--------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccC--------CCCcceEEEEEhhhccccc
Confidence 358999999999987 8999999999999987654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-10 Score=99.78 Aligned_cols=100 Identities=40% Similarity=0.654 Sum_probs=85.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (773)
|.|+|++|++|......+.++|||.+.+.+ ..++|+++.++.||.|||.|.|.+.......+.|+||+.+.. ++.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 578999999998766667899999999998 889999999999999999999999764578899999999887 689999
Q ss_pred EEEEEcCccCCCCCCCCCCcCeEEEe
Q 004109 118 RVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
.+.+++.++... ......|++|
T Consensus 81 ~~~~~l~~l~~~----~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDS----GKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhc----CCcCcceecC
Confidence 999999999711 1234567764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-10 Score=100.31 Aligned_cols=99 Identities=27% Similarity=0.506 Sum_probs=84.5
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-eeeeeeeccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCCC
Q 004109 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~~~~~ 441 (773)
+.|.|++|++|... ...+..||||++.+.+ ...+|+++.++.||.|||.|.|++.. ....+.|+|||++..+
T Consensus 1 l~v~i~~~~~l~~~---~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 46899999999764 3346799999999988 88999999999999999999999998 6789999999987654
Q ss_pred CCCCCCCCccEEEEEecCccc-cCCeEEeeEEe
Q 004109 442 KAGGARDSRIGKVRIRLSTLE-TDRVYTHSYPL 473 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 473 (773)
++.+||.+.+++.++. .+.....|++|
T Consensus 75 -----~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 -----KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred -----CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 5889999999999998 55555667654
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-10 Score=99.05 Aligned_cols=90 Identities=37% Similarity=0.651 Sum_probs=80.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY---KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~---~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (773)
|.|+|++|++|......+..+|||++++.+. ..+|+++.++.||.|||+|.|.+.......|.|+|||.+.. .+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 7899999999988775568999999999875 79999999889999999999999775578999999999877 7999
Q ss_pred eEEEEEEcCccCCC
Q 004109 116 MGRVLFDLNEIPKR 129 (773)
Q Consensus 116 lG~~~i~l~~l~~~ 129 (773)
+|.+.+++.++..+
T Consensus 82 ~G~~~~~l~~~~~~ 95 (101)
T smart00239 82 IGQVTIPLSDLLLG 95 (101)
T ss_pred eEEEEEEHHHcccC
Confidence 99999999998765
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-10 Score=98.51 Aligned_cols=91 Identities=30% Similarity=0.494 Sum_probs=79.0
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe---eeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 004109 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK---WVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHG 439 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~---~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~ 439 (773)
+.|.|++|++|.... ..+..+|||++.+++. ..+|+++.++.||.|||.|.|++..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~~---~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKKD---KKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCCC---CCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 679999999998652 2257899999999775 79999999999999999999999987 899999999997653
Q ss_pred CCCCCCCCCCccEEEEEecCccccCC
Q 004109 440 GDKAGGARDSRIGKVRIRLSTLETDR 465 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~~~ 465 (773)
.+.++|.+.+++.++..+.
T Consensus 78 -------~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 -------RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred -------CCceeEEEEEEHHHcccCc
Confidence 5899999999999987665
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.7e-10 Score=122.30 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=93.7
Q ss_pred eEEEEEEEEeecCCCC-----CCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEe
Q 004109 38 QYLYVRVVKAKDLPPK-----DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKD 107 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~-----d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d 107 (773)
..|.|+|+.|.++... +....+||||+|.+.| .+++|++..++.||+|||+|.|.+..+.-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 4799999999987521 2234679999999976 35678777889999999999999987777889999999
Q ss_pred CCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCce-eeEEEEEEEE
Q 004109 108 KDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWM 161 (773)
Q Consensus 108 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~ 161 (773)
+|.. +++++|++.+++..|..+ -++++|.+..|... ...|.+.+.+
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~G--------yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEG--------IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCC--------ceeEeccCCCcCCCCCceEEEEEEe
Confidence 9987 899999999999999865 36789999887753 3466665543
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=124.24 Aligned_cols=121 Identities=19% Similarity=0.345 Sum_probs=101.9
Q ss_pred eEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCe-eeeeeccCCC-CCCeeecEEEEEecCCC
Q 004109 38 QYLYVRVVKAKDLPPKD------------------VTGSCDPYVEVKMGNY-KGTTRHFEKK-TNPEWNQVFAFSKDRIQ 97 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d------------------~~~~~dpyv~v~~~~~-~~~T~~~~~~-~nP~WnE~f~f~v~~~~ 97 (773)
|.|.|+|.+|++|+..+ ..+++||||.|.+++. ..||+++.+. .||.|||+|.+.+...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~- 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM- 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC-
Confidence 68999999999998521 1357899999999984 6799999875 6999999999999764
Q ss_pred CceEEEEEEeCCCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCcee--eEEEEEEEEecc
Q 004109 98 SSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVR--GELMLAVWMGTQ 164 (773)
Q Consensus 98 ~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~--G~i~l~~~~~~~ 164 (773)
...|.|.|+|.+.++..+||.+.+++.++..+. ..+.||++.+..|+... ..|+++++|.+.
T Consensus 87 ~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~-----~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGE-----EVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCccCceEEEEEEEEHHHhcCCC-----ccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 478999999999998889999999999998764 36899999998876543 489999988864
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.7e-10 Score=99.64 Aligned_cols=91 Identities=30% Similarity=0.397 Sum_probs=77.3
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEECC---eeeeeeccCCCCC--CeeecEEEEEecC---------------
Q 004109 40 LYVRVVKAKDLPPKD--VTG--SCDPYVEVKMGN---YKGTTRHFEKKTN--PEWNQVFAFSKDR--------------- 95 (773)
Q Consensus 40 L~V~v~~a~~L~~~d--~~~--~~dpyv~v~~~~---~~~~T~~~~~~~n--P~WnE~f~f~v~~--------------- 95 (773)
|+|.|.+|+|++..+ ..| .+||||++.+.+ .+++|.+..+++| |.||+.|.|++.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999976543 245 499999999986 4689999999999 9999999988643
Q ss_pred --------CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCC
Q 004109 96 --------IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRV 130 (773)
Q Consensus 96 --------~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~ 130 (773)
.....|.+.|||.|.+ +|+++|++.++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 2357899999999999 9999999999999988653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.3e-10 Score=93.38 Aligned_cols=84 Identities=23% Similarity=0.379 Sum_probs=73.4
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCee
Q 004109 40 LYVRVVKAKDLPPKD---VTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDF 115 (773)
Q Consensus 40 L~V~v~~a~~L~~~d---~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~ 115 (773)
|.|+|..|+|+.-.+ ..+.+||||.+++++. +.||+. +.||.|||+|.|+++. ...+.+.|||+.....-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGGDQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCCCeecc
Confidence 679999999998776 5788999999999995 888987 4899999999999953 688999999997767778
Q ss_pred eEEEEEEcCccCC
Q 004109 116 MGRVLFDLNEIPK 128 (773)
Q Consensus 116 lG~~~i~l~~l~~ 128 (773)
+|...+.++++..
T Consensus 76 i~llW~~~sdi~E 88 (109)
T cd08689 76 VGLLWLRLSDIAE 88 (109)
T ss_pred eeeehhhHHHHHH
Confidence 9999999998874
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-09 Score=119.56 Aligned_cols=116 Identities=25% Similarity=0.386 Sum_probs=92.6
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEE
Q 004109 38 QYLYVRVVKAKDLPPK------DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~------d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~ 106 (773)
..|.|+|+.|.+++.. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..+.-..|+|+|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 4799999999997532 1123459999999965 4679999998899999999999987766678999999
Q ss_pred eCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCce-eeEEEEEEEE
Q 004109 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWM 161 (773)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~ 161 (773)
|+|.. +++++|++.+++..|..+ -+|++|.+..|... .-.|.+.+++
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~G--------yR~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPG--------IRSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCC--------ceeEeCcCCCCCCCCCEEEEEEEEe
Confidence 99987 899999999999999865 26999998877642 2355555543
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=115.37 Aligned_cols=120 Identities=28% Similarity=0.444 Sum_probs=101.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccc-cEEEEEEeCC---CceEEEEEEeCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWN-EQYTWEVFDP---CTVITIGVFDNCHL 437 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wn-e~~~f~v~~~---~~~l~v~v~d~~~~ 437 (773)
|.|.|+|..|++||.||.+ ....|.||.+++++..+||.+-.+++||.|| +-|.|+|.|. ...|+|.+.|+|.-
T Consensus 3 gkl~vki~a~r~lpvmdka--sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA--SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccc--cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 7889999999999999754 3568999999999999999999999999999 6699999874 67899999999987
Q ss_pred CCCCCCCCCCCCccEEEEEecCccc----------cCCeEEeeEEeEeecCCCcccccEEEEEEEEe
Q 004109 438 HGGDKAGGARDSRIGKVRIRLSTLE----------TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~ 494 (773)
+ .+|-||+|.|++..+. .|..+..|+|+...- -| -.|+|.+-+++.
T Consensus 81 s--------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hg--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S--------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HG--IRGEINVIVKVD 136 (1169)
T ss_pred c--------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-cc--ccceeEEEEEEe
Confidence 6 7899999999999872 356788999997531 22 358988888764
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-09 Score=115.42 Aligned_cols=105 Identities=21% Similarity=0.301 Sum_probs=84.1
Q ss_pred cceEEEEEEEccCCCCC--ccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCCC-ceEEEEEE
Q 004109 361 IGVLELGILNAQGLMPM--KTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDPC-TVITIGVF 432 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~--~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v~ 432 (773)
...|.|+|+.|++++.. ++.+.....||||+|.+.| ...+|.+..++.||.|||+|.|.+..|. ..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 36899999999998621 1112234589999999855 3467877778999999999999999884 57999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEee
Q 004109 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 476 (773)
|+|..+ +|+++|+..||++.|..|- +..||.+.
T Consensus 488 D~D~~~--------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~ 520 (537)
T PLN02223 488 DYEVST--------ADAFCGQTCLPVSELIEGI---RAVPLYDE 520 (537)
T ss_pred ecCCCC--------CCcEEEEEecchHHhcCCc---eeEeccCC
Confidence 998765 7899999999999999985 67788654
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.3e-09 Score=111.50 Aligned_cols=242 Identities=18% Similarity=0.193 Sum_probs=155.1
Q ss_pred EEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccC----CCCCceeEEEEEeccccccccCCCCCCceEEEccc
Q 004109 233 ALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVA----PNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEK 308 (773)
Q Consensus 233 ~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~----~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~ 308 (773)
..+|.++.+ .+||.|.+.|.........+.+.+.++|.+. ....+++|++...++++..... ...-+.+++
T Consensus 42 ~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~----~~~~l~~~~ 116 (529)
T KOG1327|consen 42 VGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG----LTGPLLLKP 116 (529)
T ss_pred ccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh----hhhhhhccc
Confidence 347888887 9999999999888777677899999998764 3567899999999998874311 111122222
Q ss_pred CcccccccccCCceeeEEEEEEEEccCcccCCCCCccCCCCCccccccccCccceEEEEEEEccCCCCCccCCCCCCCCc
Q 004109 309 HIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDA 388 (773)
Q Consensus 309 ~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dp 388 (773)
. .....|.+.+.+.- .. .. .....-.++|++|... |..+++||
T Consensus 117 ~---------~~~~~g~iti~aee--~~----------------------~~-~~~~~~~~~~~~ld~k---d~f~ksd~ 159 (529)
T KOG1327|consen 117 G---------KNAGSGTITISAEE--DE----------------------SD-NDVVQFSFRAKNLDPK---DFFSKSDP 159 (529)
T ss_pred C---------ccCCcccEEEEeec--cc----------------------cc-CceeeeeeeeeecCcc---cccccCCc
Confidence 1 11235665554431 00 00 1122223458888765 66789999
Q ss_pred EEEEEE--C-Ce---eeeeeeccCCCCCccccEEEEEEe-----CCCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEe
Q 004109 389 YCVAKY--G-QK---WVRTRTIIDSPTPKWNEQYTWEVF-----DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIR 457 (773)
Q Consensus 389 yv~v~~--~-~~---~~~T~~~~~t~~P~wne~~~f~v~-----~~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~ 457 (773)
|..+.- + +. .++|.+++++++|.|. .|..+.. ++...+.|.+||++.-+ ++++||++.-+
T Consensus 160 ~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~--------~~~~ig~~~tt 230 (529)
T KOG1327|consen 160 YLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNG--------KHDLIGKFQTT 230 (529)
T ss_pred ceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCC--------CcCceeEeccc
Confidence 999854 2 22 3799999999999997 4555444 34678999999998764 78999999999
Q ss_pred cCccccCCeEEeeEEeEeecCCCcc----cccEEEEE-----------------EEEeecchhhhhhhccCCCCCcc-cc
Q 004109 458 LSTLETDRVYTHSYPLLVLYPNGVK----KMGEIHLA-----------------VRFTCSSLLNMMHMYSQPLLPKM-HY 515 (773)
Q Consensus 458 l~~l~~~~~~~~~~~L~~~~~~g~~----~~G~v~l~-----------------~~~~~~~~~~~~~~~~~~~~p~~-~~ 515 (773)
+.++.. ......+++.+...+..+ ..|.+.+. .+...+.+..+.+.++.|..|.+ ||
T Consensus 231 ~~~~~~-~~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~sSLHy 309 (529)
T KOG1327|consen 231 LSELQE-PGSPNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNPSSLHY 309 (529)
T ss_pred HHHhcc-cCCcccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCCCccee
Confidence 999864 111233444433332211 13443321 11122224556667778887777 89
Q ss_pred ccccchhhhHH
Q 004109 516 LHPLTVSQLDS 526 (773)
Q Consensus 516 ~~~~~~~~~~~ 526 (773)
..|...++++.
T Consensus 310 i~p~~~N~Y~~ 320 (529)
T KOG1327|consen 310 IDPHQPNPYEQ 320 (529)
T ss_pred cCCCCCCHHHH
Confidence 99977777663
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.6e-09 Score=117.00 Aligned_cols=116 Identities=26% Similarity=0.318 Sum_probs=93.7
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEE
Q 004109 38 QYLYVRVVKAKDLPPK------DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~------d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~ 106 (773)
..|.|+|+.|.+++.. +.....||||+|.+-| .+.+|++..++.||+|||+|.|.+..++-..|+|.|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 4799999999987421 2223579999999965 3578998889999999999999987766789999999
Q ss_pred eCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCce-eeEEEEEEEE
Q 004109 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWM 161 (773)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~ 161 (773)
|+|.. +|+++|+..+++..|..+ -+.++|.+..|... ...|.+++++
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~G--------yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQG--------IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCc--------cceEeccCCCcCCCCCCeeEEEEEe
Confidence 99987 999999999999999865 25679999888753 3466666654
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.5e-09 Score=114.79 Aligned_cols=120 Identities=23% Similarity=0.283 Sum_probs=93.4
Q ss_pred cceEEEEEEEccCCCCCcc---CCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEE
Q 004109 361 IGVLELGILNAQGLMPMKT---KDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGV 431 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~---~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v 431 (773)
...|.|.|+.|++++.-.. .+.....||||+|.+-| ...+|+++.++.||.|||+|.|++..| -..+.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 3689999999999853111 12223469999998843 457999999999999999999999987 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEe
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~ 494 (773)
+|+|..+ .++++|+..||++.|..|- +|+||.+. .|. ..+.+.|-++|.
T Consensus 549 ~D~D~~~--------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~--~G~-~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE--------KDDFGGQTCLPVSELRPGI---RSVPLHDK--KGE-KLKNVRLLMRFI 597 (599)
T ss_pred EecCCCC--------CCCeEEEEEcchhHhcCCc---eeEeCcCC--CCC-CCCCEEEEEEEE
Confidence 9998765 7899999999999999986 58899653 342 335667777764
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-08 Score=114.17 Aligned_cols=115 Identities=25% Similarity=0.387 Sum_probs=91.9
Q ss_pred eEEEEEEEEeecCC--CC----CCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEE
Q 004109 38 QYLYVRVVKAKDLP--PK----DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (773)
Q Consensus 38 ~~L~V~v~~a~~L~--~~----d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~ 106 (773)
..|.|+|+.|.+++ .. +.....||||+|.+.| .+.+|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 47999999998853 11 1234579999999965 4678999988899999999999987666789999999
Q ss_pred eCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCcee-eEEEEEEE
Q 004109 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVR-GELMLAVW 160 (773)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~-G~i~l~~~ 160 (773)
|+|.. +++++|++.+++..|..+ -+.++|.+..|.... ..|.+.+.
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~G--------yR~V~L~~~~g~~l~~a~Lfv~~~ 579 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQG--------IRAFPLHSRKGEKYKSVKLLVKVE 579 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCc--------cceEEccCCCcCCCCCeeEEEEEE
Confidence 99887 899999999999999865 356799998876533 35555554
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=112.48 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=95.6
Q ss_pred eEEEEEEEEeecCCC---C---CCCCCCCcEEEEEECC-----eeeeeeccCCCCCCee-ecEEEEEecCCCCceEEEEE
Q 004109 38 QYLYVRVVKAKDLPP---K---DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEW-NQVFAFSKDRIQSSVLEVTV 105 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~---~---d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~W-nE~f~f~v~~~~~~~l~i~V 105 (773)
..|.|+|++|.+|+. . +.....||||+|.+-| .+++|+++.++.||+| ||+|.|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 369999999998732 1 1223479999999865 3578999988899999 99999998766678999999
Q ss_pred EeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCce-eeEEEEEEEEec
Q 004109 106 KDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWMGT 163 (773)
Q Consensus 106 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~~~ 163 (773)
+|.|.. +|+++|++.+++..|..+ -+.++|.+..|+.. .+.|.+.+.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~G--------YR~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSG--------VRAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCC--------eeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 999877 899999999999999765 36779999988764 356888876653
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-08 Score=111.46 Aligned_cols=116 Identities=22% Similarity=0.435 Sum_probs=94.4
Q ss_pred EEEEEEEEeecCCCC-CC---CCCCCcEEEEEECC-----eeeeeecc-CCCCCCeeecEEEEEecCCCCceEEEEEEeC
Q 004109 39 YLYVRVVKAKDLPPK-DV---TGSCDPYVEVKMGN-----YKGTTRHF-EKKTNPEWNQVFAFSKDRIQSSVLEVTVKDK 108 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~-d~---~~~~dpyv~v~~~~-----~~~~T~~~-~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~ 108 (773)
.|.|+|+.|.++... +. ...+||||.|++-| ...+|+++ .++-||.|+|+|+|.+..+.-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 799999999976533 22 25689999999977 35789955 6789999999999999877778999999999
Q ss_pred CCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCce-eeEEEEEEEEe
Q 004109 109 DFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWMG 162 (773)
Q Consensus 109 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~~ 162 (773)
|.. +|+|+|+.++++..|..+- +-++|.+..|+.. ...|.+.+.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEEEe
Confidence 998 8999999999999998652 4568999887643 36677776553
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.81 E-value=4e-08 Score=109.59 Aligned_cols=105 Identities=17% Similarity=0.261 Sum_probs=84.2
Q ss_pred cceEEEEEEEccCCCCCcc---CCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEE
Q 004109 361 IGVLELGILNAQGLMPMKT---KDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGV 431 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~---~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v 431 (773)
...|.|+|+.+++++.... .+.....||||+|.+-| ...+|+++.++.||.|||+|.|++..| -..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 3679999999999753211 12233579999998843 347899888999999999999999987 47899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEee
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 476 (773)
+|+|..+ +|+++|+..||++.|..|- +..+|.+.
T Consensus 548 ~d~d~~~--------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~ 581 (598)
T PLN02230 548 HEHDINE--------KDDFGGQTCLPVSEIRQGI---HAVPLFNR 581 (598)
T ss_pred EECCCCC--------CCCEEEEEEcchHHhhCcc---ceEeccCC
Confidence 9998764 7999999999999999884 46778653
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.8e-08 Score=107.89 Aligned_cols=122 Identities=17% Similarity=0.213 Sum_probs=92.2
Q ss_pred cceEEEEEEEccCCCC---CccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCcc-ccEEEEEEeCC-CceEEEE
Q 004109 361 IGVLELGILNAQGLMP---MKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKW-NEQYTWEVFDP-CTVITIG 430 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~---~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w-ne~~~f~v~~~-~~~l~v~ 430 (773)
...|+|+|+.|++|+. .+..+.....||||+|.+.| ..+||++++++.||.| ||.|.|.+..| -..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3579999999999742 11112233489999998843 3479999998999999 99999999987 4789999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcc-cccEEEEEEEEee
Q 004109 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRFTC 495 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~v~l~~~~~~ 495 (773)
|+|+|..+ .|+++|+..||++.|..|- +.++|.+. +|.. ...++-+.+.+.+
T Consensus 510 V~D~d~~~--------~d~figq~~lPv~~Lr~GY---R~VpL~~~--~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 510 VQDYDNDT--------QNDFAGQTCLPLPELKSGV---RAVRLHDR--AGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEeCCCCC--------CCCEEEEEEcchhHhhCCe---eEEEccCC--CCCCCCCeEEEEEEEEcC
Confidence 99998765 7899999999999998874 46688654 3432 2355666666644
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.9e-08 Score=107.61 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=83.8
Q ss_pred cceEEEEEEEccCCCC--Cc-cCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEE
Q 004109 361 IGVLELGILNAQGLMP--MK-TKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGV 431 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~--~~-~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v 431 (773)
...|.|+|+.+++++. .+ ..+.....||||+|.+.| ...||+++.++.||.|||.|.|.+..| -..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 3679999999998531 11 112234589999999843 457999999999999999999999987 47899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEee
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 476 (773)
+|+|..+ .|+++|+..||++.|..|- +..||.+.
T Consensus 531 ~d~D~~~--------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~ 564 (581)
T PLN02222 531 HEYDMSE--------KDDFGGQTCLPVWELSQGI---RAFPLHSR 564 (581)
T ss_pred EECCCCC--------CCcEEEEEEcchhhhhCcc---ceEEccCC
Confidence 9998754 7899999999999999884 46677653
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-08 Score=84.01 Aligned_cols=86 Identities=21% Similarity=0.334 Sum_probs=71.2
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 004109 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 442 (773)
|.|.|..|+|+...++....+.+||||.+++++. +.||++ +.||.|||.|.|+| +-...+.+.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~------ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGG------ 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCC------
Confidence 5789999999987643224577999999999887 789998 59999999999999 568899999999843
Q ss_pred CCCCCCCccEEEEEecCccc
Q 004109 443 AGGARDSRIGKVRIRLSTLE 462 (773)
Q Consensus 443 ~~~~~d~~lG~~~i~l~~l~ 462 (773)
+..-.||-.=|.++++.
T Consensus 71 ---~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 71 ---DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred ---CeecceeeehhhHHHHH
Confidence 14678898888888884
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.7e-08 Score=107.59 Aligned_cols=118 Identities=20% Similarity=0.347 Sum_probs=90.9
Q ss_pred eEEEEEEEccCCCCCccCC-CCCCCCcEEEEEECCe-----eeeeeec-cCCCCCccccEEEEEEeCC-CceEEEEEEeC
Q 004109 363 VLELGILNAQGLMPMKTKD-GRGTTDAYCVAKYGQK-----WVRTRTI-IDSPTPKWNEQYTWEVFDP-CTVITIGVFDN 434 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~~~~-----~~~T~~~-~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~ 434 (773)
.|.|.|+.++|++...... .+..+||||.|++.|. ..+|+++ .++-||.|+|+|+|++..| -.-|++.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999887643222 2346999999998653 4799955 4688999999999999998 56899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcc-cccEEEEEEEE
Q 004109 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRF 493 (773)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~v~l~~~~ 493 (773)
|..+ +|+|+|+..||+..|..|- +.+||.+. .|.. ...++-+.+.+
T Consensus 697 d~~~--------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~--~G~~~~~asLfv~i~~ 743 (746)
T KOG0169|consen 697 DYIG--------KDDFIGQTTLPVSELRQGY---RHVPLLSR--EGEALSSASLFVRIAI 743 (746)
T ss_pred CCCC--------cccccceeeccHHHhhCce---eeeeecCC--CCccccceeEEEEEEE
Confidence 9876 8999999999999999884 56778664 3332 23445555544
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-09 Score=114.30 Aligned_cols=126 Identities=32% Similarity=0.560 Sum_probs=106.0
Q ss_pred ccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------e------------------eeeeeccCCCC
Q 004109 33 LVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------------Y------------------KGTTRHFEKKT 81 (773)
Q Consensus 33 ~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-------------~------------------~~~T~~~~~~~ 81 (773)
...+...|.|.+.+|+||.+.|.+|-+|||+...+-. + .+-|.+.++|+
T Consensus 109 ~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TL 188 (1103)
T KOG1328|consen 109 NKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTL 188 (1103)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccC
Confidence 3456677899999999999999999999999887621 0 12488889999
Q ss_pred CCeeecEEEEEecCCCCceEEEEEEeCCC------------------------------------C-CCeeeEEEEEEcC
Q 004109 82 NPEWNQVFAFSKDRIQSSVLEVTVKDKDF------------------------------------V-KDDFMGRVLFDLN 124 (773)
Q Consensus 82 nP~WnE~f~f~v~~~~~~~l~i~V~d~~~------------------------------------~-~d~~lG~~~i~l~ 124 (773)
||.|+|.|.|.+++.+.+.+.+.+||+|. . .|||+|.+.|+|+
T Consensus 189 nPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 189 NPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred CcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 99999999999999999999999999832 1 4899999999999
Q ss_pred ccCCCCCCCCCCcCeEEEeeeCCC-CceeeEEEEEEEEecc
Q 004109 125 EIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAVWMGTQ 164 (773)
Q Consensus 125 ~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~~~~ 164 (773)
++... ..++||+|+.++. .+.+|.+++.+|+.+.
T Consensus 269 EiP~~------Gld~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 269 EIPPD------GLDQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred cCCcc------hHHHHhccCcccccccccceEEEEEEEeee
Confidence 99854 3689999999874 4678999999999864
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-08 Score=105.48 Aligned_cols=124 Identities=28% Similarity=0.463 Sum_probs=102.0
Q ss_pred eeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeeccCCCCCCeeecE-EEEEec--CCCCceEEEEEEeCCCC-
Q 004109 37 MQYLYVRVVKAKDLPPKDV-TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQV-FAFSKD--RIQSSVLEVTVKDKDFV- 111 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~-~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~-f~f~v~--~~~~~~l~i~V~d~~~~- 111 (773)
+|.|.|+|+.||+|+.+|. +...|.||++++++..++|.+..+++||.||.. |.|.|+ ++++++|.|.+.|+|..
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 3678999999999999986 457799999999999999999999999999955 888884 56789999999999998
Q ss_pred CCeeeEEEEEEcCccCCCCC-----CCCCCcCeEEEeeeCCCCceeeEEEEEEEE
Q 004109 112 KDDFMGRVLFDLNEIPKRVP-----PDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~-----~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (773)
.+|-||.+.|++..|..... ..+.+...|+++.+.-- ..+|+|.+-+.+
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-girgeinvivkv 135 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-GIRGEINVIVKV 135 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-cccceeEEEEEE
Confidence 89999999999998875321 12456778999988641 246888776644
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.7e-08 Score=105.54 Aligned_cols=116 Identities=23% Similarity=0.357 Sum_probs=88.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----ee-eeeeccCCCCCCeee-cEEEEEecCCCCceEEEEEEeCCC
Q 004109 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YK-GTTRHFEKKTNPEWN-QVFAFSKDRIQSSVLEVTVKDKDF 110 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~-~~T~~~~~~~nP~Wn-E~f~f~v~~~~~~~l~i~V~d~~~ 110 (773)
-.|.|.|+.||.|+... .+.+.|||+|.+-| .+ ++|.++.+++||+|| |+|+|.+.+++-..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 36899999999999554 46778999999866 23 455566899999999 999999999989999999999999
Q ss_pred C-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCc-eeeEEEEEEEEe
Q 004109 111 V-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK-VRGELMLAVWMG 162 (773)
Q Consensus 111 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~ 162 (773)
+ ...|||++++++..+..+- +-.+|.+.-.+. ....|.+.+...
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf--------RsVpLkN~ySEdlELaSLLv~i~m~ 1189 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF--------RSVPLKNGYSEDLELASLLVFIEMR 1189 (1267)
T ss_pred cCCcceeeeeecchhhhhccc--------eeeecccCchhhhhhhhheeeeEec
Confidence 9 5669999999999987652 334666543221 124455554443
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-08 Score=110.49 Aligned_cols=104 Identities=29% Similarity=0.506 Sum_probs=89.0
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeccCCCCCCeeecEEEEEecC
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-------KGTTRHFEKKTNPEWNQVFAFSKDR 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-------~~~T~~~~~~~nP~WnE~f~f~v~~ 95 (773)
|...+...|+.-.+ .|.|.|+.|+++.+-|.+|.+||||.|.+++. .++|++..+|+||+|+|+|+|.|..
T Consensus 934 g~lsvr~~y~~n~q--~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~ 1011 (1103)
T KOG1328|consen 934 GVLSVRAYYNGNAQ--TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPP 1011 (1103)
T ss_pred CceEEEEEeecccc--chhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCc
Confidence 33455666665554 89999999999999999999999999999872 4689999999999999999999953
Q ss_pred C----CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCC
Q 004109 96 I----QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPK 128 (773)
Q Consensus 96 ~----~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~ 128 (773)
. ....|-|+|.|+|.. .+||-|++.+.|.++..
T Consensus 1012 e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1012 EPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cccccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 2 256789999999998 99999999999998874
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-07 Score=104.45 Aligned_cols=121 Identities=21% Similarity=0.246 Sum_probs=92.5
Q ss_pred ceEEEEEEEccCCCCCccC-C-CCCCCCcEEEEEECCee-eeeeeccCCCCCccccEEEEEEeCCC-ceEEEEEEeCCCC
Q 004109 362 GVLELGILNAQGLMPMKTK-D-GRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPC-TVITIGVFDNCHL 437 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~-~-~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v~d~~~~ 437 (773)
|.|.++|++|+-+...-.. . .....||||.|.+++.+ .|| .+..||.|||.|.+++..+. ..+.+.|.|.
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~--- 83 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK--- 83 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC---
Confidence 8899999999832211000 0 01223999999998866 588 55669999999999999987 7899999982
Q ss_pred CCCCCCCCCCCCccEEEEEecCccccCCe-EEeeEEeEeecCCCcccccEEEEEEEEeecchh
Q 004109 438 HGGDKAGGARDSRIGKVRIRLSTLETDRV-YTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSLL 499 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~~~~ 499 (773)
-.+||++.||..++..|.. +++|+|+.+...+.. +..++++.++|.+...-
T Consensus 84 ----------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 84 ----------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN-PELKLRFMLWFRPAELE 135 (758)
T ss_pred ----------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC-CCCEEEEEEEEEEhhhC
Confidence 4699999999999988865 999999987654333 22589999999887543
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.6e-08 Score=110.49 Aligned_cols=123 Identities=27% Similarity=0.386 Sum_probs=101.3
Q ss_pred CCCCCCccc-CcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecE
Q 004109 15 PHLGGGKIT-GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQV 88 (773)
Q Consensus 15 ~~~~~~~~~-~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~ 88 (773)
|+..+|+|| ..+++.+|. -|.|+|.|.-|++|+--..+..+||||+.++.+ -+.||+++.+|.||.|||.
T Consensus 1504 ps~~p~~iggqV~LsIsY~----~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~ 1579 (1639)
T KOG0905|consen 1504 PSRNPGEIGGQVKLSISYN----NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEM 1579 (1639)
T ss_pred CCCCccccCceEEEEEEEc----CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhh
Confidence 566677877 448888887 468999999999996555467899999999976 3678999999999999999
Q ss_pred EEEE---ecCCCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004109 89 FAFS---KDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 89 f~f~---v~~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
+... ...+....|.+.||..+.. .+.++|.+.++|.++...++ ...||+|...
T Consensus 1580 LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE-----~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1580 LVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE-----SVGWYNLGAC 1636 (1639)
T ss_pred eeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhh-----hcceeecccc
Confidence 8776 3445568899999998888 88999999999999987653 3489998653
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-07 Score=101.97 Aligned_cols=99 Identities=18% Similarity=0.321 Sum_probs=81.9
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeee-eeeccCCCCCccc-cEEEEEEeCC-CceEEEEEEe
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVR-TRTIIDSPTPKWN-EQYTWEVFDP-CTVITIGVFD 433 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~-T~~~~~t~~P~wn-e~~~f~v~~~-~~~l~v~v~d 433 (773)
-.|.|.|+.||.|+. .++|..-|||+|++-| .+++ |.++.+.+||+|| |.|+|.+.+| -.-|++.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 578999999999984 5667788999998844 3344 4455679999999 9999999998 5789999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
.|.++ ...|||++..|+..+..|- +..||.+
T Consensus 1141 eDmfs--------~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1141 EDMFS--------DPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred ccccC--------Ccceeeeeecchhhhhccc---eeeeccc
Confidence 99997 4569999999999998873 5677765
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.2e-07 Score=97.25 Aligned_cols=178 Identities=20% Similarity=0.236 Sum_probs=126.7
Q ss_pred eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-----CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeee
Q 004109 71 KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (773)
Q Consensus 71 ~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (773)
..+|.++.+.+||.|-+.|.+...-...+.+++.++|.+.. ..+|+|++...+..+....... . .|..
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~-----~--~l~~ 114 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT-----G--PLLL 114 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh-----h--hhhc
Confidence 45899999999999999998887555578999999997653 7899999999999988653211 1 1211
Q ss_pred CCCC-ceeeEEEEEEEEeccCCCCCCcccccccccccccccccccccceeccCceEEEEEEEEEeecCCCCCCCCCCCcE
Q 004109 146 RKGD-KVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVY 224 (773)
Q Consensus 146 ~~~~-~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~~~~dpy 224 (773)
..+. ...|+|.+.+.-. .+. .....-..+|++|..++..+++|||
T Consensus 115 ~~~~~~~~g~iti~aee~-----------~~~-----------------------~~~~~~~~~~~~ld~kd~f~ksd~~ 160 (529)
T KOG1327|consen 115 KPGKNAGSGTITISAEED-----------ESD-----------------------NDVVQFSFRAKNLDPKDFFSKSDPY 160 (529)
T ss_pred ccCccCCcccEEEEeecc-----------ccc-----------------------CceeeeeeeeeecCcccccccCCcc
Confidence 1111 1246666654110 000 0122223558999999999999999
Q ss_pred EEEEEC--C----EEEEeecccCCCCCccccceEEEEeeC----CCCCeEEEEEEEccCCCCCceeEEEEEeccccc
Q 004109 225 VKAQLG--N----QALRTRVSASRTINPMWNEDLMFVAAE----PFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVD 291 (773)
Q Consensus 225 v~v~l~--~----~~~kT~~~~~~t~nP~wne~f~f~~~~----~~~~~l~i~V~d~~~~~~d~~iG~~~i~L~~l~ 291 (773)
..+.-- . ..++|.++++ +++|.|.. |...... ..+..+.+.+||++..+++++||++..+++++.
T Consensus 161 l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 161 LEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred eEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 988653 1 3578999887 99999985 3333322 234578899999999999999999999999886
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.4e-07 Score=100.62 Aligned_cols=117 Identities=21% Similarity=0.352 Sum_probs=91.0
Q ss_pred eEEEEEEEEeecCCCC----CC-CCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC
Q 004109 38 QYLYVRVVKAKDLPPK----DV-TGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~----d~-~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~ 111 (773)
|.|.++|.+|+-+... +. ....||||.|.+++. ..|| .+..||.|||+|.+.+.......+.|.|+|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 6899999999843221 11 112399999999984 5677 556799999999999976555679999999
Q ss_pred CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceee-EEEEEEEEeccC
Q 004109 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRG-ELMLAVWMGTQA 165 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G-~i~l~~~~~~~~ 165 (773)
+..+||.+.+++.++..+. .....||++.+..|+...| .|+++++|.+..
T Consensus 83 ~~~~ig~~~~p~~~~~~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEA----SFINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred CCeEEEEEEEEHHHhhCCC----cccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 3679999999999998763 2368999999988765555 899999988643
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-07 Score=81.44 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=81.3
Q ss_pred EEEEEEEccCCCCCccC------C----CCCCCCcEEEEEE----CCeeeeeeeccCCCCCccccEEEEEEe--------
Q 004109 364 LELGILNAQGLMPMKTK------D----GRGTTDAYCVAKY----GQKWVRTRTIIDSPTPKWNEQYTWEVF-------- 421 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~------~----~~~~~dpyv~v~~----~~~~~~T~~~~~t~~P~wne~~~f~v~-------- 421 (773)
+.|.|+||.||.....+ + ..-..++||++.+ +++..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46889999999753221 1 1223689999985 567789999999999999999999876
Q ss_pred CC--------CceEEEEEEeCCCCCCCCC--CCCCCCCccEEEEEecCccccC-CeEEeeEEe
Q 004109 422 DP--------CTVITIGVFDNCHLHGGDK--AGGARDSRIGKVRIRLSTLETD-RVYTHSYPL 473 (773)
Q Consensus 422 ~~--------~~~l~v~v~d~~~~~~~~~--~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 473 (773)
+. ...+.++||..+.-+.++. ....+|-.||.+.||+.+|... .-+.+|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 21 4589999999876543331 1223788999999999998544 446789885
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00018 Score=75.71 Aligned_cols=244 Identities=18% Similarity=0.234 Sum_probs=156.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEec-------CCCCceEEEEEEeCCCC-
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKD-------RIQSSVLEVTVKDKDFV- 111 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~-------~~~~~~l~i~V~d~~~~- 111 (773)
+.|+|++|+|.+... ...-.+..+++++...|-.+..+..|.||..+.|.++ ..+..+|.+++|..+..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 679999999998763 3466899999999999999999999999999999873 23568899999998833
Q ss_pred -CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC--CceeeEEEEEEEEeccCCCCCCcc----ccccccccc-cc
Q 004109 112 -KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAVWMGTQADEAFPEA----WHSDAATVT-GI 183 (773)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~~~~~~~d~~~~~~----~~~~~~~~~-~~ 183 (773)
..+.+|.+.++|+...............||+|...++ ++.+-+|.+.+.+.........+. +........ ..
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 8899999999999982211111346789999998843 334678888888765443211000 000000000 00
Q ss_pred cc---ccc--c-------ccc--eec---cCceEEEEEEEEEeecCCCCC----C--CCCCCcEEEEEECCEEEEeeccc
Q 004109 184 EG---LAN--I-------RSK--VYL---SPKLWYLRVNVIEAQDLQPTD----K--GRFPEVYVKAQLGNQALRTRVSA 240 (773)
Q Consensus 184 ~~---~~~--~-------~~~--~~~---~p~~~~L~V~v~~a~~L~~~~----~--~~~~dpyv~v~l~~~~~kT~~~~ 240 (773)
.. ... . ..- ... .-..+.|.|++..|++|...- . .+....|....+-+....|..-+
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~ 238 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFK 238 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeecc
Confidence 00 000 0 000 001 234678999999999987652 1 12345666777766666666555
Q ss_pred CCCCCcccc-ceEE-EEeeCC---------CCCeEEEEEEEccCCCCCceeEEEEEecccccc
Q 004109 241 SRTINPMWN-EDLM-FVAAEP---------FEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDK 292 (773)
Q Consensus 241 ~~t~nP~wn-e~f~-f~~~~~---------~~~~l~i~V~d~~~~~~d~~iG~~~i~L~~l~~ 292 (773)
. ..+|.|- |.-. +.+... ....|.|.++. .+..||.+.+++..+..
T Consensus 239 ~-l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 239 S-LSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLP 295 (340)
T ss_pred c-cCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccC
Confidence 4 6777654 2222 444321 12356666665 36789999999999864
|
|
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-07 Score=86.16 Aligned_cols=101 Identities=19% Similarity=0.276 Sum_probs=75.6
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCCChHHHHHHHhcCC----Ccccccc--chhhHHHHHHHHHHHHHHHHHHhhhhcccC
Q 004109 522 SQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVG----SHMWSMR--RSKANFFRIMGVLSGIIAVGKWFDQICNWK 595 (773)
Q Consensus 522 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~--~~~~n~~Rl~~~~~~~~~~~~~i~~l~~W~ 595 (773)
.+++.+|.+...++..+++++|....+|+.|+++..+ .+..+++ +++.-..|++.+++.+...+++++.+++|+
T Consensus 13 ~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWr 92 (156)
T PF08372_consen 13 LWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWR 92 (156)
T ss_pred HhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3445556666666778889999888999988887632 2334333 888889999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHccchhHHHHHH
Q 004109 596 NPITTVLIHILFIILVLYPELILPTVFL 623 (773)
Q Consensus 596 ~p~~t~~~~~~~~~~~~~~~l~~p~~~l 623 (773)
+|.+|.++++++++++ ...+++|+=.+
T Consensus 93 dP~aT~lf~~~clv~a-vvly~vP~r~l 119 (156)
T PF08372_consen 93 DPRATALFVVFCLVAA-VVLYFVPFRVL 119 (156)
T ss_pred CccHHHHHHHHHHHHH-HHHHHhhHHHH
Confidence 9999999976665544 33445555443
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.9e-07 Score=101.98 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=85.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEe---C-CCceEEEEEE
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVF---D-PCTVITIGVF 432 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~---~-~~~~l~v~v~ 432 (773)
|.|.|.|..|+||+.. ..+..+||||+..+-. .+.||+++.+|.||.|||...+.-. . ....|++.||
T Consensus 1524 ~~LtImV~H~K~L~~L---qdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALL---QDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred ceEEEEhhhhcccccc---cCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeee
Confidence 8999999999999765 3346799999999943 2479999999999999999887622 1 1468999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004109 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
..+.+. .+.++|.+.|+|.++.-.+...+||+|-
T Consensus 1601 s~~~~~--------en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1601 SNGGLL--------ENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccccee--------eeeeeeeeecchhhcchhhhhcceeecc
Confidence 988765 7899999999999998877778999983
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0015 Score=68.96 Aligned_cols=238 Identities=15% Similarity=0.198 Sum_probs=159.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeecccCCCCCccccceEEEEeeC-------CCCCeEEEEEEEcc-C
Q 004109 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAE-------PFEEHLILTVEDRV-A 273 (773)
Q Consensus 202 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~-------~~~~~l~i~V~d~~-~ 273 (773)
+.|.|++|++.+... ...-.|..+++++...|..+.. +..|.||....|.+.. .+...|++++|..+ .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 678999999998763 2467889999999999998876 9999999999998742 23557999999987 5
Q ss_pred CCCCceeEEEEEecccc-ccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccCcccCC---------CCC
Q 004109 274 PNKDEVLGKCMIPLQYV-DKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLD---------EST 343 (773)
Q Consensus 274 ~~~d~~iG~~~i~L~~l-~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~---------~~~ 343 (773)
.+..+.||.+.++|... ...........+||+|-.... +-.+..-++.+.+++........ +.+
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~------~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS------KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEcccccc------ccccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 67889999999999988 111223346789999987521 11233456777777654332100 011
Q ss_pred ccCC-------CCCcccc--c-------------cccCccceEEEEEEEccCCCCCccCC---CCCCCCcEEEEEECCee
Q 004109 344 HYSS-------DLRPTAK--Q-------------LWKSSIGVLELGILNAQGLMPMKTKD---GRGTTDAYCVAKYGQKW 398 (773)
Q Consensus 344 ~~~~-------~~~p~~~--~-------------~~~~~~g~l~v~v~~a~~L~~~~~~~---~~~~~dpyv~v~~~~~~ 398 (773)
...+ ...+... . ......-.|.|+|-.|+||..+-... ..+...-|....+-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 1111 0001000 0 00123567889999999987652111 12335667777777778
Q ss_pred eeeeeccCCCCCccc-cEEE-EEEeCC----------CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccc
Q 004109 399 VRTRTIIDSPTPKWN-EQYT-WEVFDP----------CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462 (773)
Q Consensus 399 ~~T~~~~~t~~P~wn-e~~~-f~v~~~----------~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 462 (773)
..|..-+...+|.|- |.-. +.++.. ...|.|.++-. +..||.+.|++..+.
T Consensus 232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-------------~~~Lg~~~v~l~~Ll 294 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-------------NQSLGSTSVPLQPLL 294 (340)
T ss_pred eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-------------CcEEEEEEEEhhhcc
Confidence 888888888888773 3334 776632 34677777763 568999999999984
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.5e-05 Score=63.14 Aligned_cols=88 Identities=17% Similarity=0.281 Sum_probs=66.0
Q ss_pred EEEEEEeecCCCCCCCC-CCCcEEEEE--EC-CeeeeeeccCCCCCCeeecEEEEEe--cCCCCceEEEEEEeCCCCCCe
Q 004109 41 YVRVVKAKDLPPKDVTG-SCDPYVEVK--MG-NYKGTTRHFEKKTNPEWNQVFAFSK--DRIQSSVLEVTVKDKDFVKDD 114 (773)
Q Consensus 41 ~V~v~~a~~L~~~d~~~-~~dpyv~v~--~~-~~~~~T~~~~~~~nP~WnE~f~f~v--~~~~~~~l~i~V~d~~~~~d~ 114 (773)
.|+|++|++|.-....| .+.-|++=- +. ...+||....+..||+|+|+|.|.+ ..+..-.|.|.|+..-. +.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-RKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCC-ccc
Confidence 68999999997554332 233344422 23 2568899999999999999999987 45667789999998322 889
Q ss_pred eeEEEEEEcCccCCC
Q 004109 115 FMGRVLFDLNEIPKR 129 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~ 129 (773)
.||.++++++++-.+
T Consensus 81 ~iG~~sL~l~s~gee 95 (103)
T cd08684 81 TIGECSLSLRTLSTQ 95 (103)
T ss_pred eeeEEEeecccCCHH
Confidence 999999999988643
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.1e-05 Score=86.22 Aligned_cols=89 Identities=21% Similarity=0.358 Sum_probs=73.7
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEE-EECCeeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCC
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVA-KYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCH 436 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v-~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~ 436 (773)
.-.|.+.+++++|+ | ...|+|+.+ .+|.+.+||++.++|+||+||+...|.|... ....++.|||++.
T Consensus 51 ~~~~~~~~~~~~~~----~------~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 51 DFSGIALLTLVGAE----M------KFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred cccCeEEEEeehhh----h------ccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 34589999999998 3 225887766 6788999999999999999999999998853 2336999999999
Q ss_pred CCCCCCCCCCCCCccEEEEEecCccccCC
Q 004109 437 LHGGDKAGGARDSRIGKVRIRLSTLETDR 465 (773)
Q Consensus 437 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 465 (773)
++ +++++|.+.++|.++...+
T Consensus 121 ~s--------~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 121 LS--------KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred CC--------HHHhhhheeecHhhccHHH
Confidence 87 8999999999998886543
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.8e-05 Score=65.59 Aligned_cols=100 Identities=21% Similarity=0.362 Sum_probs=76.5
Q ss_pred EEEEEEEeecCCCCCC-------------CCCCCcEEEEEEC----CeeeeeeccCCCCCCeeecEEEEEec--------
Q 004109 40 LYVRVVKAKDLPPKDV-------------TGSCDPYVEVKMG----NYKGTTRHFEKKTNPEWNQVFAFSKD-------- 94 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~-------------~~~~dpyv~v~~~----~~~~~T~~~~~~~nP~WnE~f~f~v~-------- 94 (773)
|.|.|++|.+|+.... .--.|+||++.+. ++..+|+++.++-.|.|+-.++|...
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4577888888864311 1125899999953 36789999999999999999999853
Q ss_pred -------CCCCceEEEEEEeCCC----------C-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004109 95 -------RIQSSVLEVTVKDKDF----------V-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 95 -------~~~~~~l~i~V~d~~~----------~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
-++...+.++||+... . +|-+||++.|++.+|..+ ......||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~----rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK----RSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc----ccCccccccC
Confidence 1346789999998743 1 678999999999999976 3457889875
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.65 E-value=6.7e-05 Score=85.31 Aligned_cols=90 Identities=16% Similarity=0.221 Sum_probs=76.1
Q ss_pred ccCceeEEEEEEEEeecCCCCCCCCCCCcE-EEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC
Q 004109 33 LVEQMQYLYVRVVKAKDLPPKDVTGSCDPY-VEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (773)
Q Consensus 33 ~~~~~~~L~V~v~~a~~L~~~d~~~~~dpy-v~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~ 111 (773)
.++=.|.+.+++++|+ ++ ..||| +.+++|.+.++|.+.++|.||+|||...|.+.........|.|||.+.+
T Consensus 49 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred cccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 4455689999999997 33 25886 6777888999999999999999999999999765556679999999999
Q ss_pred -CCeeeEEEEEEcCccCCC
Q 004109 112 -KDDFMGRVLFDLNEIPKR 129 (773)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~ 129 (773)
.++++|.++++|.++..+
T Consensus 122 s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CHHHhhhheeecHhhccHH
Confidence 999999999999888754
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0002 Score=73.75 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=86.4
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-CC----eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEe
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-GQ----KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFD 433 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-~~----~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d 433 (773)
...|.+.|.|++|++|.... ..+..++|||+|.+ ++ .+.+|+...+|++|-+.++..|.-.-+...|.+.||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~--~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKP--GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccccC--CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 45689999999999998742 22347999999987 32 2368999999999999888888777778899999994
Q ss_pred -CCCCCCCCCCCCCCCCccEEEEEecCccccCC-eEEeeEEeEee
Q 004109 434 -NCHLHGGDKAGGARDSRIGKVRIRLSTLETDR-VYTHSYPLLVL 476 (773)
Q Consensus 434 -~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 476 (773)
...+ +.+.|+|-+.|-+.++.-.. ....||+|...
T Consensus 344 dygRm--------d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 344 DYGRM--------DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccc--------chHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 4333 27899999999999997665 78899999654
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00037 Score=56.53 Aligned_cols=87 Identities=16% Similarity=0.378 Sum_probs=63.1
Q ss_pred EEEEEEeecCCCCCC-CCCCCcEEEEEEC--C-EEEEeecccCCCCCccccceEEEEeeC--CCCCeEEEEEEEccCCCC
Q 004109 203 RVNVIEAQDLQPTDK-GRFPEVYVKAQLG--N-QALRTRVSASRTINPMWNEDLMFVAAE--PFEEHLILTVEDRVAPNK 276 (773)
Q Consensus 203 ~V~v~~a~~L~~~~~-~~~~dpyv~v~l~--~-~~~kT~~~~~~t~nP~wne~f~f~~~~--~~~~~l~i~V~d~~~~~~ 276 (773)
-|++++|++|.-... ...+.-|++-.+. + -..||+.. .+..||.|+|+|.|.+.. ..+-.|.|.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~r-rgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAK-EGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhh-cCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 478899999864332 2345567765553 2 35677764 459999999999998754 334577888887 5678
Q ss_pred CceeEEEEEecccccc
Q 004109 277 DEVLGKCMIPLQYVDK 292 (773)
Q Consensus 277 d~~iG~~~i~L~~l~~ 292 (773)
.+.||.|.+.+.++..
T Consensus 79 Ke~iG~~sL~l~s~ge 94 (103)
T cd08684 79 KRTIGECSLSLRTLST 94 (103)
T ss_pred cceeeEEEeecccCCH
Confidence 8999999999998864
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0003 Score=73.03 Aligned_cols=117 Identities=19% Similarity=0.257 Sum_probs=90.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeecEEEEEecC---CC--------CceEE
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMG-----NYKGTTRHFEKKTNPEWNQVFAFSKDR---IQ--------SSVLE 102 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~-----~~~~~T~~~~~~~nP~WnE~f~f~v~~---~~--------~~~l~ 102 (773)
.|.+.|+++.+++........|-||++.+- .++.+|.++++|..|.|+|.|.+.+.. .. .-.+.
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 678889999988766544456789988873 267889999999999999999999854 11 34689
Q ss_pred EEEEeCCCC--CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCc-eeeEEEEEEEEe
Q 004109 103 VTVKDKDFV--KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK-VRGELMLAVWMG 162 (773)
Q Consensus 103 i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~ 162 (773)
|++|++..+ +|.++|++.+.|..|...- .....|+|.+ |++ +.|.|.+.+.+.
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~c-----ei~e~~~l~D--GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMC-----EICEYLPLKD--GRKAVGGKLEVKVRIR 503 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhccc-----chhhceeccc--cccccCCeeEEEEEEe
Confidence 999999888 9999999999999887542 2345677777 443 457888887665
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00052 Score=71.32 Aligned_cols=120 Identities=23% Similarity=0.320 Sum_probs=95.4
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---C--CeeeeeeeccCCCCCccccEEEEEEeC-C----------
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---G--QKWVRTRTIIDSPTPKWNEQYTWEVFD-P---------- 423 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~--~~~~~T~~~~~t~~P~wne~~~f~v~~-~---------- 423 (773)
....|++.|+++++++.. .+....|-|+++++ + .+..+|.+++.|.+|.|+|.|.+.+.. +
T Consensus 365 ~d~elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~f 441 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRF 441 (523)
T ss_pred chhHhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHH
Confidence 345788889999988754 33456889999987 2 245799999999999999999999885 2
Q ss_pred -CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcc-cccEEEEEEEE
Q 004109 424 -CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRF 493 (773)
Q Consensus 424 -~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~v~l~~~~ 493 (773)
...+.|++|....+. + +|.++|++.|.|..|.+.-.+...|+|.+ |.+ ..|.+++.+++
T Consensus 442 kr~g~kfeifhkggf~---r----Sdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRi 502 (523)
T KOG3837|consen 442 KRLGKKFEIFHKGGFN---R----SDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRI 502 (523)
T ss_pred HhcCeeEEEeeccccc---c----ccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEE
Confidence 236899999987653 2 68999999999999999888888999975 333 35888888887
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00041 Score=71.51 Aligned_cols=112 Identities=25% Similarity=0.330 Sum_probs=89.0
Q ss_pred ecccCceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEE
Q 004109 31 YDLVEQMQYLYVRVVKAKDLPPKDV-TGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVT 104 (773)
Q Consensus 31 ~~~~~~~~~L~V~v~~a~~L~~~d~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~ 104 (773)
..+....|.|+|.|+.|++|..... ...++|||+|++-+ .+.+|+...+|..|-+-+...|.-. +....|.++
T Consensus 262 ~~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~t 340 (405)
T KOG2060|consen 262 IALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGT 340 (405)
T ss_pred hhhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEE
Confidence 3466778999999999999975533 33789999999854 3678988898988888888877755 357889999
Q ss_pred EEe-CCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 105 VKD-KDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 105 V~d-~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
||. +.+. .+.|+|.+.+-+.+|... ......||+|....
T Consensus 341 v~gdygRmd~k~fmg~aqi~l~eL~ls----~~~~igwyKlfgss 381 (405)
T KOG2060|consen 341 VWGDYGRMDHKSFMGVAQIMLDELNLS----SSPVIGWYKLFGSS 381 (405)
T ss_pred EeccccccchHHHhhHHHHHhhhhccc----cccceeeeeccCCc
Confidence 994 5566 888999999999999875 33467899998765
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.025 Score=52.38 Aligned_cols=126 Identities=13% Similarity=0.187 Sum_probs=85.1
Q ss_pred ceEEEEEEEccCCCC-CccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC--------------Cce
Q 004109 362 GVLELGILNAQGLMP-MKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--------------CTV 426 (773)
Q Consensus 362 g~l~v~v~~a~~L~~-~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--------------~~~ 426 (773)
-.|.+.|..++...- .+..++...+--.+-+.+++++++|+.+..+.+|.|+|.|-|++... ++.
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 467777777775421 10001122233444557799999999999999999999999988632 457
Q ss_pred EEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeE--EeeEEeEeecCCCcccccEEEEEEEEee
Q 004109 427 ITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVY--THSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 427 l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
|++.|.-.|..+ ...++|.-.+++..+...... .....|.+......-..|.+++++...|
T Consensus 89 ihivli~~d~~~--------~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 89 IHIVLIRTDPSG--------ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred eEEEEEEecCCC--------ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 899998877643 458999999999987544322 4455555543332224699999998754
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.094 Score=49.35 Aligned_cols=107 Identities=18% Similarity=0.273 Sum_probs=73.3
Q ss_pred ecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeeccCCCCCCeeecEEEEEe--cC-CCCceE
Q 004109 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYK----GTTRHFEKKTNPEWNQVFAFSK--DR-IQSSVL 101 (773)
Q Consensus 31 ~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~--~~~~----~~T~~~~~~~nP~WnE~f~f~v--~~-~~~~~l 101 (773)
.+++. .++|+|+++.++...+ .+|-||++.+ |++. ..|+.+.. .++.|||.+.|++ .+ +.+..|
T Consensus 4 wd~~~---~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL 76 (158)
T cd08398 4 WKINS---NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARL 76 (158)
T ss_pred eeCCC---CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheE
Confidence 45555 4889999999998653 4577877754 5532 34554543 6899999999987 33 347899
Q ss_pred EEEEEeCCCC-----CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEecc
Q 004109 102 EVTVKDKDFV-----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (773)
Q Consensus 102 ~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (773)
.|.||+.... ....+|.+.++|-+.... | -+|...+.+|..+.
T Consensus 77 ~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~~~-------------L-------r~G~~~L~lW~~~~ 124 (158)
T cd08398 77 CLSICSVKGRKGAKEEHCPLAWGNINLFDYTDT-------------L-------VSGKMALNLWPVPH 124 (158)
T ss_pred EEEEEEEecccCCCCceEEEEEEEEEEECCCCh-------------h-------hCCCEEEEEEcCCc
Confidence 9999997542 224689988888774311 1 14788888887543
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.13 Score=47.73 Aligned_cols=127 Identities=14% Similarity=0.121 Sum_probs=87.3
Q ss_pred CceeEEEEEEEEeecCCCCCC----CCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCC-------------
Q 004109 35 EQMQYLYVRVVKAKDLPPKDV----TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQ------------- 97 (773)
Q Consensus 35 ~~~~~L~V~v~~a~~L~~~d~----~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~------------- 97 (773)
+...+|.++|..|+-....-. ...+--.+.+.+++|.++|+.+..+.+|.++|.|.|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 444579999999987643221 122333566777899999999999999999999999984221
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC--ceeeEEEEEEEEecc
Q 004109 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD--KVRGELMLAVWMGTQ 164 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~~~~~~~ 164 (773)
.+.+.+.|.--|.. ...++|+..++-+.+...+.. ....-.+|....++ -..|-|.+++.+.+.
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~---~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNG---STSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCC---ccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 35677877766665 558999999998887765321 01223455554432 357999999877653
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.019 Score=65.52 Aligned_cols=98 Identities=21% Similarity=0.315 Sum_probs=73.4
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeecc-CCCCCCeeecE-EEEEe-cCCCCceEEEEEE
Q 004109 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------YKGTTRHF-EKKTNPEWNQV-FAFSK-DRIQSSVLEVTVK 106 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-------~~~~T~~~-~~~~nP~WnE~-f~f~v-~~~~~~~l~i~V~ 106 (773)
.+.+.|+|++|.-|..++ ...||.|.+=| ..++|+++ .++.||+|+|. |.|.- --+.-..|+|-||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 357999999999987654 45899999855 35789988 56899999987 77763 2223467999999
Q ss_pred eCCCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC
Q 004109 107 DKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD 149 (773)
Q Consensus 107 d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 149 (773)
+.+ ..++|+-.+++..|..+ -+.+.|....+.
T Consensus 778 eEg---gK~ig~RIlpvd~l~~G--------Yrhv~LRse~Nq 809 (1189)
T KOG1265|consen 778 EEG---GKFIGQRILPVDGLNAG--------YRHVCLRSESNQ 809 (1189)
T ss_pred ccC---CceeeeeccchhcccCc--------ceeEEecCCCCC
Confidence 974 57999999999988765 244566665443
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.068 Score=51.26 Aligned_cols=91 Identities=16% Similarity=0.209 Sum_probs=61.7
Q ss_pred ecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEE--ECCe----eeeeeccCCCCCCeeecEEEEEe--cC-CCCceE
Q 004109 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVK--MGNY----KGTTRHFEKKTNPEWNQVFAFSK--DR-IQSSVL 101 (773)
Q Consensus 31 ~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~--~~~~----~~~T~~~~~~~nP~WnE~f~f~v--~~-~~~~~l 101 (773)
.++++ .++|+|+.+.++...+ ...+-||++. .|++ ..+|+....+.++.|||.+.|++ .+ +....|
T Consensus 4 w~~~~---~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArL 78 (173)
T cd08693 4 WDIEE---KFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARL 78 (173)
T ss_pred eccCC---CEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeE
Confidence 34545 5899999999998622 3456676654 4553 33566665567899999999986 33 347899
Q ss_pred EEEEEeCCCC-----------------CCeeeEEEEEEcCcc
Q 004109 102 EVTVKDKDFV-----------------KDDFMGRVLFDLNEI 126 (773)
Q Consensus 102 ~i~V~d~~~~-----------------~d~~lG~~~i~l~~l 126 (773)
.|.||+.... .+..||.+.+.|-+.
T Consensus 79 citi~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 79 CFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred EEEEEEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 9999986532 135667766666653
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.11 Score=48.87 Aligned_cols=88 Identities=18% Similarity=0.294 Sum_probs=61.9
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCeee----eeeeccCCCCCccccEEEEEEe--C-C-CceEEEEE
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKWV----RTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGV 431 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~~~----~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v 431 (773)
..++|.|++|.++... ..+|-||.+.+ |++.. .|+.+.- .++.|||-++|++. + | ...|.|.|
T Consensus 8 ~~~~v~i~~~~~~~~~------~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti 80 (158)
T cd08398 8 SNLRIKILCATYVNVN------DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSI 80 (158)
T ss_pred CCeEEEEEeeccCCCC------CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEE
Confidence 4788999999998642 34788988855 66543 4444443 67999999999876 3 3 78999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCc
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~ 460 (773)
|+...-. +. ++....||.+.++|-+
T Consensus 81 ~~~~~~~-~~---k~~~~~iG~~ni~LFd 105 (158)
T cd08398 81 CSVKGRK-GA---KEEHCPLAWGNINLFD 105 (158)
T ss_pred EEEeccc-CC---CCceEEEEEEEEEEEC
Confidence 9965310 00 1134579999999876
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.16 Score=48.64 Aligned_cols=94 Identities=16% Similarity=0.279 Sum_probs=64.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCeee----eeeeccCCCCCccccEEEEEEe--C-C-CceEEEEE
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKWV----RTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGV 431 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~~~----~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v 431 (773)
..++|+|+.+.+|... ....+-||.+.+ |++.. .|+.+.-+.++.|||.+.|++. + | ...|.|.|
T Consensus 8 ~~f~i~i~~~~~~~~~-----~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti 82 (173)
T cd08693 8 EKFSITLHKISNLNAA-----ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAI 82 (173)
T ss_pred CCEEEEEEEeccCccC-----CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEE
Confidence 4789999999999751 234777888754 77653 5655555677999999999876 3 3 78999999
Q ss_pred EeCCCCCCCCC--------CCCCCCCccEEEEEecCc
Q 004109 432 FDNCHLHGGDK--------AGGARDSRIGKVRIRLST 460 (773)
Q Consensus 432 ~d~~~~~~~~~--------~~~~~d~~lG~~~i~l~~ 460 (773)
|+......+.+ ...+++..||.+.++|-+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 99754211111 012245788999888866
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.36 Score=45.60 Aligned_cols=92 Identities=23% Similarity=0.269 Sum_probs=65.4
Q ss_pred CCCCcEEEEEE--CCe----eeeeeccCCCCCCeeecEEEEEe--cC-CCCceEEEEEEeCCCC-CCeeeEEEEEEcCcc
Q 004109 57 GSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSK--DR-IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEI 126 (773)
Q Consensus 57 ~~~dpyv~v~~--~~~----~~~T~~~~~~~nP~WnE~f~f~v--~~-~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l 126 (773)
..+|-||.+.+ +++ ..+|+.+.-+..+.|||...|++ .+ +.+..|.|.|||.+.. +...+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34677877754 443 23566665567789999999997 33 3478899999998765 677999999998875
Q ss_pred CCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEeccCCCC
Q 004109 127 PKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEA 168 (773)
Q Consensus 127 ~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~ 168 (773)
. + .| -+|...+.+|....+|..
T Consensus 108 ~-g------------~L-------r~G~~~l~lw~~~~~d~~ 129 (159)
T cd08397 108 D-G------------TL-------RRGRQKLRVWPDVEADGS 129 (159)
T ss_pred C-C------------cE-------ecCCEEEEEEeCCCCCCc
Confidence 2 1 11 147888999887766653
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.1 Score=59.73 Aligned_cols=95 Identities=23% Similarity=0.377 Sum_probs=73.1
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------EEEEeecccCCCCCccccce-EEEE-eeCCCCCeEEEEEEE
Q 004109 200 WYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-------QALRTRVSASRTINPMWNED-LMFV-AAEPFEEHLILTVED 270 (773)
Q Consensus 200 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-------~~~kT~~~~~~t~nP~wne~-f~f~-~~~~~~~~l~i~V~d 270 (773)
+.+.|+|++|.=|..++. ..||.|.+-+ +.++|+++..++.||+|+|. |.|. +--+.-..|.|.||+
T Consensus 703 ~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 468999999999987764 5899999854 56889998877999999976 7774 344455689999998
Q ss_pred ccCCCCCceeEEEEEeccccccccCCCCCCceEEEcccC
Q 004109 271 RVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (773)
Q Consensus 271 ~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~ 309 (773)
. ...+||+-.+|+..+.. .-+.+.|...
T Consensus 779 E----ggK~ig~RIlpvd~l~~-------GYrhv~LRse 806 (1189)
T KOG1265|consen 779 E----GGKFIGQRILPVDGLNA-------GYRHVCLRSE 806 (1189)
T ss_pred c----CCceeeeeccchhcccC-------cceeEEecCC
Confidence 6 46799999999998753 3345556554
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.81 Score=42.37 Aligned_cols=116 Identities=17% Similarity=0.222 Sum_probs=77.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCee---eeeeec-cCCCCCccccEEEEEEeC---C------CceEE
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW---VRTRTI-IDSPTPKWNEQYTWEVFD---P------CTVIT 428 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~---~~T~~~-~~t~~P~wne~~~f~v~~---~------~~~l~ 428 (773)
-.+.|.|++..+++. .....||+.+-|+.. ..|... ..+..-.|||.|.+.+.- . ...++
T Consensus 7 f~~~l~i~~l~~~p~-------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 7 FQFDLTIHELENLPS-------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred EEEEEEEEEeECcCC-------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 467888999998874 223455566666553 344433 246677999999998762 1 23688
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecCcccc--CCeEEeeEEeEeecCCCcccccEEEEEEEEeec
Q 004109 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET--DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (773)
Q Consensus 429 v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~ 496 (773)
+.|+....-+ +...||++.|+|++..+ .......++|... .+....+++.+++.+.
T Consensus 80 ~~v~~~~~~~--------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 80 FSVFEVDGSG--------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSEL 137 (143)
T ss_pred EEEEEecCCC--------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEEC
Confidence 8888864211 23699999999999977 3567778888542 2345778888877543
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.014 Score=56.02 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=18.7
Q ss_pred HHHHHhHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhhccCCccCCC
Q 004109 692 VGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHK 753 (773)
Q Consensus 692 l~~~a~~~e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~~~P~~r~~ 753 (773)
...++..+..++.++.|++|..|..++.+|.+.+.+..+++...++.+..+..+.=|.+-..
T Consensus 90 ~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~ 151 (169)
T PF02453_consen 90 AEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEK 151 (169)
T ss_dssp CCCCCHHHHHHHCCCHCT-TTGGG--------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHH
Confidence 33555668888999999999999999999999999888888777766655544444555433
|
Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A. |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.38 Score=45.44 Aligned_cols=106 Identities=20% Similarity=0.329 Sum_probs=70.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeccCCCCCCeeecEEEEEe--cC-CCCceEEEEEEeCC
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSK--DR-IQSSVLEVTVKDKD 109 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~--~~~----~~~T~~~~~~~nP~WnE~f~f~v--~~-~~~~~l~i~V~d~~ 109 (773)
.++|++....++...+ ....+-||.+.+ |++ ...|+......++.|||.+.|++ .+ +.+..|.|.||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4788888888876522 223455666643 553 23444444447899999999986 33 34688999999976
Q ss_pred CC---CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEeccC
Q 004109 110 FV---KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQA 165 (773)
Q Consensus 110 ~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~ 165 (773)
.. .+..||.+.++|-+... .| .+|...+.+|-....
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~~-------------~L-------~~G~~~l~lW~~~~~ 126 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYKG-------------KL-------RQGMITLNLWPGKKT 126 (156)
T ss_pred cCCCCcceEEEEEeEEeEcccC-------------cE-------ecCCEEEeccCCccc
Confidence 54 35799999999887532 11 147788888765433
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.4 Score=40.72 Aligned_cols=117 Identities=21% Similarity=0.316 Sum_probs=76.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee---eeeecc-CCCCCCeeecEEEEEec--------CCCCceEEEEE
Q 004109 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK---GTTRHF-EKKTNPEWNQVFAFSKD--------RIQSSVLEVTV 105 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~---~~T~~~-~~~~nP~WnE~f~f~v~--------~~~~~~l~i~V 105 (773)
..+.|+|.+..+++. ....-+|+..-++.. .+|... ..+-.-.|||.|.+.+. ......+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 467899999999886 223445666655542 455544 33445789999999862 13456788999
Q ss_pred EeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004109 106 KDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 106 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
+..... +...+|.+.++|+++..... .....-++|... ......|.+++.+..
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~---~~~~~~~~l~~~--~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDE---EPITVRLLLKKC--KKSNATLSISISLSE 136 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCC---CcEEEEEeCccC--CCCCcEEEEEEEEEE
Confidence 887543 33699999999999986421 123345566654 233567888876654
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.6 Score=44.05 Aligned_cols=88 Identities=26% Similarity=0.357 Sum_probs=58.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEE----EEeecccCCCCCccccceEEEEee---CCCCCeEEEEEEEc
Q 004109 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQA----LRTRVSASRTINPMWNEDLMFVAA---EPFEEHLILTVEDR 271 (773)
Q Consensus 201 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l--~~~~----~kT~~~~~~t~nP~wne~f~f~~~---~~~~~~l~i~V~d~ 271 (773)
.++|.+....++... .....+-||++.+ |++. ..|..... ..++.|||...|++. -+.+..|.|+||+.
T Consensus 9 ~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 9 NLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 377888888777641 1223566777644 5542 23333221 368999999999763 24567899999998
Q ss_pred cCCC--CCceeEEEEEecccc
Q 004109 272 VAPN--KDEVLGKCMIPLQYV 290 (773)
Q Consensus 272 ~~~~--~d~~iG~~~i~L~~l 290 (773)
+..+ .+..||.+.++|-+-
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 6543 568999999988764
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.45 Score=44.94 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=52.4
Q ss_pred CCCCcEEEEEE--CCee----eeeeeccCCCCCccccEEEEEEe--C-C-CceEEEEEEeCCCCCCCCCCCCCCCCccEE
Q 004109 384 GTTDAYCVAKY--GQKW----VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGVFDNCHLHGGDKAGGARDSRIGK 453 (773)
Q Consensus 384 ~~~dpyv~v~~--~~~~----~~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~ 453 (773)
..+|-||.+.+ |++. .+|+.+.-+..+.|||-+.|++. + | .+.|.|.|||.+..+ +...||.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~--------~~~~vg~ 99 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG--------KAVPFGG 99 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC--------CceEEEE
Confidence 34788888865 6654 36666655677899999999887 2 3 789999999976422 4678999
Q ss_pred EEEecCcc
Q 004109 454 VRIRLSTL 461 (773)
Q Consensus 454 ~~i~l~~l 461 (773)
+.++|-+-
T Consensus 100 ~~~~lFd~ 107 (159)
T cd08397 100 TTLSLFNK 107 (159)
T ss_pred EEEeeECC
Confidence 99998764
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.59 Score=44.85 Aligned_cols=90 Identities=27% Similarity=0.361 Sum_probs=62.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEEE----Eeeccc--C-CCCCccccceEEEEee---CCCCCeEEEEE
Q 004109 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQAL----RTRVSA--S-RTINPMWNEDLMFVAA---EPFEEHLILTV 268 (773)
Q Consensus 201 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l--~~~~~----kT~~~~--~-~t~nP~wne~f~f~~~---~~~~~~l~i~V 268 (773)
.++|+|..+.+++........|-||++.+ |++.. .|+... + -...+.|||...|++. -+.+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 48899999999987765556788888855 55543 333211 1 1235779999999773 24577999999
Q ss_pred EEccCCC---------CCceeEEEEEecccc
Q 004109 269 EDRVAPN---------KDEVLGKCMIPLQYV 290 (773)
Q Consensus 269 ~d~~~~~---------~d~~iG~~~i~L~~l 290 (773)
|+....+ .+..||.+.++|-+-
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9976443 457899998887753
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.1 Score=42.92 Aligned_cols=105 Identities=23% Similarity=0.311 Sum_probs=70.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeeccC----CCCCCeeecEEEEEec--C-CCCceEEEEE
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYK----GTTRHFE----KKTNPEWNQVFAFSKD--R-IQSSVLEVTV 105 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~--~~~~----~~T~~~~----~~~nP~WnE~f~f~v~--~-~~~~~l~i~V 105 (773)
.+.|+|..+.+++........|-||.+.+ |++. ..|+... -...+.|||.+.|++. + +.+..|.|.|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 58999999999987764445677877754 5532 2444321 1235779999999872 2 3478999999
Q ss_pred EeCCCC----------CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004109 106 KDKDFV----------KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 106 ~d~~~~----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
|+.... .+..||.+.++|-+.. |.=.+|...+.+|...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~--------------------~~L~~G~~~L~lW~~~ 136 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR--------------------GVLRQGSLLLGLWPPS 136 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcch--------------------hhhccCCEEEEeccCC
Confidence 986543 2467788777776643 1112478888888654
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=91.61 E-value=2.2 Score=39.53 Aligned_cols=74 Identities=22% Similarity=0.331 Sum_probs=50.3
Q ss_pred eeeccCCC-CCCeeecEEEEEe--cC-CCCceEEEEEEeCCCC-CC----eeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004109 73 TTRHFEKK-TNPEWNQVFAFSK--DR-IQSSVLEVTVKDKDFV-KD----DFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 73 ~T~~~~~~-~nP~WnE~f~f~v--~~-~~~~~l~i~V~d~~~~-~d----~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
.|+...-+ .++.|||.+.|++ .+ +....|.|.||+.+.. .+ ..||.+.++|-+.... |
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-------------L 89 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-------------L 89 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-------------B
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-------------c
Confidence 55555545 7999999999986 33 3578999999998766 43 6999999998876321 1
Q ss_pred eeCCCCceeeEEEEEEEEeccCC
Q 004109 144 EDRKGDKVRGELMLAVWMGTQAD 166 (773)
Q Consensus 144 ~~~~~~~~~G~i~l~~~~~~~~d 166 (773)
.+|...+.+|-....+
T Consensus 90 -------~~G~~~L~lW~~~~~~ 105 (142)
T PF00792_consen 90 -------RQGPQKLSLWPDEEPD 105 (142)
T ss_dssp -------EEEEEEEE-EET-TTS
T ss_pred -------cCCCEEEEEEcCCCCc
Confidence 2588999987765433
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.48 E-value=2.4 Score=40.70 Aligned_cols=123 Identities=13% Similarity=0.087 Sum_probs=66.5
Q ss_pred eecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee---eeeeccCCCCCCeeecEEEEEe--cC-CCCceE
Q 004109 30 TYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVK--MGNYK---GTTRHFEKKTNPEWNQVFAFSK--DR-IQSSVL 101 (773)
Q Consensus 30 ~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~--~~~~~---~~T~~~~~~~nP~WnE~f~f~v--~~-~~~~~l 101 (773)
-.++.. .++|+|..+.++... ......-||++. .|++. .+|....-+.++.|||.+.|++ .+ +....|
T Consensus 5 lwdi~~---~friki~~~~~~~~~-~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arL 80 (178)
T cd08399 5 LWDCDR---KFRVKILGIDIPVLP-RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALL 80 (178)
T ss_pred eEecCC---CEEEEEEeecccCcC-CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEE
Confidence 345555 478888888744322 222223455543 34432 3566666677899999999987 33 347899
Q ss_pred EEEEEeCCCC--CCeeeEEEEEEcCccCCCCCCCCCCcCeEE--EeeeCCCCceeeEEEEEEEEec
Q 004109 102 EVTVKDKDFV--KDDFMGRVLFDLNEIPKRVPPDSPLAPQWY--RLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 102 ~i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~--~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
.|.||+.... +....|.... ...+ +....-.|. .|-+.++.=-+|...+.+|..+
T Consensus 81 c~ti~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~ 139 (178)
T cd08399 81 NLQIYCGKAPALSSKKSAESPS-----SESK--GKHQLLYYVNLLLIDHRFLLRTGEYVLHMWQIS 139 (178)
T ss_pred EEEEEEEecCcccccccccccc-----cccc--cccceEEEEEEEEEcCCCceecCCEEEEEecCC
Confidence 9999996432 1112222100 0000 011222443 3444444333688999998755
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.98 E-value=2.9 Score=40.13 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=59.5
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCee---eeeeeccCCCCCccccEEEEEEe--C-C-CceEEEEEE
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKW---VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGVF 432 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~~---~~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v~ 432 (773)
..++|+|.++..+ .. +......-||++.+ |+.. .+|..+.-+.++.|||-+.|++. + | ...|.|.||
T Consensus 10 ~~friki~~~~~~-~~---~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~ 85 (178)
T cd08399 10 RKFRVKILGIDIP-VL---PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIY 85 (178)
T ss_pred CCEEEEEEeeccc-Cc---CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEE
Confidence 3677888888743 32 11222446666643 5554 36666666778999999999877 3 3 789999999
Q ss_pred eCCCCCC-----CC---CCCCCCCCccEEEEEecCc
Q 004109 433 DNCHLHG-----GD---KAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 433 d~~~~~~-----~~---~~~~~~d~~lG~~~i~l~~ 460 (773)
+...... +. +..++.+..||.+.+.|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 86 CGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred EEecCcccccccccccccccccccceEEEEEEEEEc
Confidence 9632110 00 1112346788888888766
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=90.97 E-value=3.1 Score=34.63 Aligned_cols=64 Identities=25% Similarity=0.412 Sum_probs=48.9
Q ss_pred CCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEcCccC
Q 004109 59 CDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIP 127 (773)
Q Consensus 59 ~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~ 127 (773)
++-.|.+++.+ ...+|.-.. -.+..|++.|.+.++. +..|+|.||=+|. ..+-|...+.|.+..
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~~ 73 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDER 73 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhhc
Confidence 57889999988 567776554 3588999999999875 6789999987664 346677777777743
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.54 Score=47.73 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=61.5
Q ss_pred ecccCceeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEe
Q 004109 31 YDLVEQMQYLYVRVVKAKDLPPKD--VTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKD 107 (773)
Q Consensus 31 ~~~~~~~~~L~V~v~~a~~L~~~d--~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d 107 (773)
.++....|+|.++++++++|+-.. .+-+-+-||++....+ +.+|.+...+.-=.|.|+|..++-. ...+.+-||.
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 456677899999999999997443 2446788999999874 6678777777777899999998765 3567788887
Q ss_pred CCCC
Q 004109 108 KDFV 111 (773)
Q Consensus 108 ~~~~ 111 (773)
++.-
T Consensus 122 W~pq 125 (442)
T KOG1452|consen 122 WPPQ 125 (442)
T ss_pred cCch
Confidence 7654
|
|
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.40 E-value=0.57 Score=54.64 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=84.3
Q ss_pred CCCCcEEEEEECCee-eeeeeccCC-CCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCcc
Q 004109 384 GTTDAYCVAKYGQKW-VRTRTIIDS-PTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (773)
Q Consensus 384 ~~~dpyv~v~~~~~~-~~T~~~~~t-~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l 461 (773)
..+++|+.+.+.... .+|..+++. .+|.|.+.|..........+++.+-+.+..| ....+|.++++...+
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G--------~s~~w~~v~~s~~~~ 207 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG--------WSKRWGRVKISFLQY 207 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc--------ceeEEEEeccchhhh
Confidence 457999999997765 688888887 7999999998888888889999998887764 467999999999999
Q ss_pred ccCCeEEeeEEeEeecCCCcccccEEEEEEEEeecch
Q 004109 462 ETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSL 498 (773)
Q Consensus 462 ~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~~~ 498 (773)
..+.....|+++...+.+...+.-.+.+.++|.+...
T Consensus 208 ~~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~~ 244 (887)
T KOG1329|consen 208 CSGHRIGGWFPILDNDGKPHQKGSNESLRLGFTPMEK 244 (887)
T ss_pred hccccccceeeeeccCCccccCCcccceEEeeEeech
Confidence 9998899999997765533333234556666665543
|
|
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=87.61 E-value=3.2 Score=40.17 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=32.9
Q ss_pred eeeeeccCCCCCCeeecEEEEEec--CCCCceEEEEEEeCCC
Q 004109 71 KGTTRHFEKKTNPEWNQVFAFSKD--RIQSSVLEVTVKDKDF 110 (773)
Q Consensus 71 ~~~T~~~~~~~nP~WnE~f~f~v~--~~~~~~l~i~V~d~~~ 110 (773)
.++|.+...+.+|.|+|++.+.+. ......|.|++++...
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~ 95 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSS 95 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecc
Confidence 567888888999999999999873 4457889999988654
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain | Back alignment and domain information |
|---|
Probab=87.17 E-value=0.7 Score=36.90 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=33.8
Q ss_pred eccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccC
Q 004109 286 PLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGG 335 (773)
Q Consensus 286 ~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~ 335 (773)
++..++. +++|....+|..|.++.+... +..|++++++++.+.
T Consensus 2 DlgtVY~-qP~H~~~~KW~~L~dP~D~~~------G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 2 DLGTVYN-QPDHQFYRKWALLTDPDDTSA------GVKGYLKVDISVLGP 44 (72)
T ss_pred ceeeeec-CCCCeeEeceEEecCCCCCcc------CCceEEEEEEEEEcC
Confidence 5566664 678899999999999865433 568999999998765
|
They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains []. |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=87.11 E-value=8.4 Score=32.17 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=44.0
Q ss_pred CCcEEEEEECC-EEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeEEEEEeccc
Q 004109 221 PEVYVKAQLGN-QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQY 289 (773)
Q Consensus 221 ~dpyv~v~l~~-~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~iG~~~i~L~~ 289 (773)
++..+.+++.+ ...+|.- +. ..+..|++.|.+.+.. ...|+|.|+=+|- ..+.|-..+.|++
T Consensus 9 ~eV~avLklDn~~VgqT~W-k~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd 71 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQW-KP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLED 71 (98)
T ss_pred cceEEEEEEcCeEEeeccc-cc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhh
Confidence 57788999987 4566665 33 6789999999999864 4578888886642 3355555666666
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.86 E-value=1.5 Score=44.65 Aligned_cols=76 Identities=25% Similarity=0.326 Sum_probs=58.1
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCC
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHL 437 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~ 437 (773)
-.|.|.+.++.++||..... ..+-..+-||+++++.+ ..||.+......-.|.|.|...+.. ..++.+-||.|+.-
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~-~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQ-QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQ 125 (442)
T ss_pred ccceEEEEEecccccccChh-ccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCch
Confidence 34899999999999976422 12335789999999764 5677777667777899999998875 46788999999753
|
|
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=86.42 E-value=3.9 Score=37.80 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=44.5
Q ss_pred cEEEEEE--CCeee-----eeeeccCC-CCCccccEEEEEEe--C-C-CceEEEEEEeCCCCCCCCCCCCCCC----Ccc
Q 004109 388 AYCVAKY--GQKWV-----RTRTIIDS-PTPKWNEQYTWEVF--D-P-CTVITIGVFDNCHLHGGDKAGGARD----SRI 451 (773)
Q Consensus 388 pyv~v~~--~~~~~-----~T~~~~~t-~~P~wne~~~f~v~--~-~-~~~l~v~v~d~~~~~~~~~~~~~~d----~~l 451 (773)
-||.+.+ |++.. .|..+.-+ .++.|||.+.|++. + | ...|.|.||+.+... .+ ..|
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~--------~~~~~~~~l 75 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK--------KSKKKKVPL 75 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST--------TT--EEEEE
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC--------ccccceeEE
Confidence 3555543 66542 55555555 79999999999876 3 3 789999999876532 22 689
Q ss_pred EEEEEecCcc
Q 004109 452 GKVRIRLSTL 461 (773)
Q Consensus 452 G~~~i~l~~l 461 (773)
|.+.++|-+.
T Consensus 76 gw~n~~lFd~ 85 (142)
T PF00792_consen 76 GWVNLPLFDY 85 (142)
T ss_dssp EEEEEESB-T
T ss_pred EEEEEEeECC
Confidence 9999998775
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=86.12 E-value=4.1 Score=35.12 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=47.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeccCCCCCCeeecEEEEEec--C-CCCceEEEEEEeCC
Q 004109 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSKD--R-IQSSVLEVTVKDKD 109 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~--~~~----~~~T~~~~~~~nP~WnE~f~f~v~--~-~~~~~l~i~V~d~~ 109 (773)
+.+.+....+.........++-||.+.+ |++ ...|+.+.-...+.|||...|++. + +.+..|.|.||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5677777777766543333477777754 553 235655555566999999999872 3 34788999999854
|
Outlier of C2 family. |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=84.18 E-value=24 Score=33.71 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=57.4
Q ss_pred CCCcEEEEEECCE-EEEeecccC-CCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeEEEEEeccccccccCCC
Q 004109 220 FPEVYVKAQLGNQ-ALRTRVSAS-RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHK 297 (773)
Q Consensus 220 ~~dpyv~v~l~~~-~~kT~~~~~-~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~iG~~~i~L~~l~~~~~~~ 297 (773)
...-|+++.++++ ..+|+...- ..-.-.|||.|.+.+.. .-+.|.++||.... ..+..|+++.+++-.........
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~ 113 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTD 113 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCccccccc
Confidence 3467899999885 455554321 12335678999998866 56689999999866 68899999999987654221111
Q ss_pred CCCceEEEcccC
Q 004109 298 PVNTRWYNLEKH 309 (773)
Q Consensus 298 ~~~~~w~~L~~~ 309 (773)
.....|+.....
T Consensus 114 ~~~~~~~eFsS~ 125 (168)
T PF15625_consen 114 NVPLEEYEFSSD 125 (168)
T ss_pred CCceEeEEEcCC
Confidence 114455555443
|
|
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=83.51 E-value=2.5 Score=40.82 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=32.4
Q ss_pred eeeeeccCCCCCCeeecEEEEEec--CCCCceEEEEEEeCCC
Q 004109 71 KGTTRHFEKKTNPEWNQVFAFSKD--RIQSSVLEVTVKDKDF 110 (773)
Q Consensus 71 ~~~T~~~~~~~nP~WnE~f~f~v~--~~~~~~l~i~V~d~~~ 110 (773)
.++|.+...+.+|.|+|++.+.+. ......|.|+.++...
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 467888888999999999999884 3457789999888644
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=83.26 E-value=3.7 Score=39.89 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=32.8
Q ss_pred eeeeeccCCCCCCeeecEEEEEecC--CCCceEEEEEEeCCCC--C--CeeeEEEEEEcCc
Q 004109 71 KGTTRHFEKKTNPEWNQVFAFSKDR--IQSSVLEVTVKDKDFV--K--DDFMGRVLFDLNE 125 (773)
Q Consensus 71 ~~~T~~~~~~~nP~WnE~f~f~v~~--~~~~~l~i~V~d~~~~--~--d~~lG~~~i~l~~ 125 (773)
.+.|.+...+.+|.|+|+|.+.+.. .....|.|++++...- + +..+|.+.++|.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3467777888999999999998843 3467899999997653 2 2678887777776
|
|
| >PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function | Back alignment and domain information |
|---|
Probab=83.12 E-value=7.7 Score=33.84 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=50.6
Q ss_pred EEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC--------CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCc
Q 004109 389 YCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--------CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 389 yv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--------~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~ 460 (773)
||.+.+-...-.|..+....+|.+|-+-.|.|.-. ...+.|+++..-.. ....||.+.|++.+
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~---------d~~tla~~~i~l~~ 72 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS---------DFETLAAGQISLRP 72 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS----------EEEEEEEEE--SH
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC---------CeEEEEEEEeechh
Confidence 67777766554444445599999998888888732 45889999885321 46899999999999
Q ss_pred ccc--CCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 461 LET--DRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 461 l~~--~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+.. +..+.....|.+. .|. ..|.++..++.
T Consensus 73 ll~~~~~~i~~~~~l~g~--~~~-~~g~l~y~~rl 104 (107)
T PF11618_consen 73 LLESNGERIHGSATLVGV--SGE-DFGTLEYWIRL 104 (107)
T ss_dssp HHH--S--EEEEEEE-BS--SS--TSEEEEEEEEE
T ss_pred hhcCCCceEEEEEEEecc--CCC-eEEEEEEEEEe
Confidence 853 3346666666543 232 56888877775
|
It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A. |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=81.87 E-value=9.2 Score=32.91 Aligned_cols=70 Identities=24% Similarity=0.326 Sum_probs=44.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEEE----EeecccCCCCCccccceEEEEee---CCCCCeEEEEEEEcc
Q 004109 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQAL----RTRVSASRTINPMWNEDLMFVAA---EPFEEHLILTVEDRV 272 (773)
Q Consensus 202 L~V~v~~a~~L~~~~~~~~~dpyv~v~l--~~~~~----kT~~~~~~t~nP~wne~f~f~~~---~~~~~~l~i~V~d~~ 272 (773)
+.+.+..+.+.........++-||++.+ |++.. .|+.. .....+.|||...|++. -+.+..|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~-~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYK-PFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEeccc-CCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4556666666654433333578888755 55432 34432 22556899999999764 245678999999864
|
Outlier of C2 family. |
| >PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function | Back alignment and domain information |
|---|
Probab=81.68 E-value=3.9 Score=35.67 Aligned_cols=95 Identities=12% Similarity=0.059 Sum_probs=50.9
Q ss_pred EEEEEECC-eeeeeeccCCCCCCeeecEEEEEecC-------CCCceEEEEEEeCCCCCCeeeEEEEEEcCccCCCCCCC
Q 004109 62 YVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDR-------IQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPD 133 (773)
Q Consensus 62 yv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~-------~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~ 133 (773)
||.+.+-+ +.+.|.++. +.||.+|-+-.+.|.. +.+..+.|+++..-....+.+|.+.+++.++..+.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~--- 77 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESN--- 77 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH-----
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCC---
Confidence 56666656 455666666 8899999998888742 23678999999866447889999999999998543
Q ss_pred CCCcCeEEEeeeCCCCceeeEEEEEEEE
Q 004109 134 SPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (773)
Q Consensus 134 ~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (773)
+.....-..|.+..|+ .-|.|...+.+
T Consensus 78 ~~~i~~~~~l~g~~~~-~~g~l~y~~rl 104 (107)
T PF11618_consen 78 GERIHGSATLVGVSGE-DFGTLEYWIRL 104 (107)
T ss_dssp S--EEEEEEE-BSSS--TSEEEEEEEEE
T ss_pred CceEEEEEEEeccCCC-eEEEEEEEEEe
Confidence 1123344566665554 56877766544
|
It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 773 | ||||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 1e-10 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 1e-10 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 8e-08 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 3e-05 | ||
| 1rh8_A | 142 | Three-Dimensional Structure Of The Calcium-Free Pic | 1e-06 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 2e-06 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 4e-06 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 3e-04 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 9e-06 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 5e-05 | ||
| 1rlw_A | 126 | Calcium-Phospholipid Binding Domain From Cytosolic | 8e-05 | ||
| 1cjy_A | 749 | Human Cytosolic Phospholipase A2 Length = 749 | 1e-04 | ||
| 1bci_A | 138 | C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim | 2e-04 | ||
| 1v27_A | 141 | Solution Structure Of The First C2 Domain Of Rim2 L | 7e-04 |
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126 | Back alignment and structure |
|
| >pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749 | Back alignment and structure |
|
| >pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138 | Back alignment and structure |
|
| >pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2 Length = 141 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 1e-50
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 28 TSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQ 87
+ + V+ + L V+V+KA DL D +G DP+ +++GN + T K NPEWN+
Sbjct: 3 SGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNK 62
Query: 88 VFAFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146
VF F I VLEVTV D+D DF+G+V L I P Y L+++
Sbjct: 63 VFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNK 114
Query: 147 KGD-KVRGELMLAV 159
+ +G + L +
Sbjct: 115 DLEQAFKGVIYLEM 128
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 1e-19
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEV 420
+G+L++ +L A L+ D G +D +C+ + G ++T T+ + P+WN+ +T+ +
Sbjct: 12 VGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 421 FDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNG 480
D V+ + VFD D +GKV I L ++ + + Y L
Sbjct: 69 KDIHDVLEVTVFDE------DGDK--PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ 118
Query: 481 VKKMGEIHLAVRF 493
K G I+L +
Sbjct: 119 AFK-GVIYLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 3e-19
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 19/132 (14%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
L+V V++A DL D + + +LGN L+T + +NP WN+ F +
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT-VYKNLNPEWNKVFTFPIKDI- 71
Query: 261 EEHLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKK 318
+ L +TV ED + LGK IPL + Y L+ K
Sbjct: 72 HDVLEVTVFDEDGD--KPPDFLGKVAIPLLSIRDG------QPNCYVLKN-------KDL 116
Query: 319 DTKFASRIHMRI 330
+ F I++ +
Sbjct: 117 EQAFKGVIYLEM 128
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 5e-43
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 11/152 (7%)
Query: 18 GGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY------K 71
G + D E + + VRV+ L KD+ G+ DPYV V + +
Sbjct: 1 GMATCAVEVFGLLED-EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTS 59
Query: 72 GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRV 130
T+ +K NP+WN+ F Q L V D++ +DDF+G+V L +P
Sbjct: 60 VQTKTIKKSLNPKWNEEILFRVHPQQHR-LLFEVFDENRLTRDDFLGQVDVPLYPLPTEN 118
Query: 131 PPDS-PLAPQWYRLEDRKGD-KVRGELMLAVW 160
P P + + L R +V+G L L +
Sbjct: 119 PRLERPYTFKDFVLHPRSHKSRVKGYLRLKMT 150
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 6e-17
Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 22/161 (13%)
Query: 182 GIEGLANIR-SKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA------L 234
G+ A + +RV VI L D + YV+ L + +
Sbjct: 1 GMATCAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSV 60
Query: 235 RTRVSASRTINPMWNEDLMFVAAEPFEEHLILTV--EDRVAPNKDEVLGKCMIPLQYVDK 292
+T+ +++NP WNE+++F P + L+ V E+R+ +D+ LG+ +PL +
Sbjct: 61 QTKT-IKKSLNPKWNEEILFR-VHPQQHRLLFEVFDENRL--TRDDFLGQVDVPLYPLPT 116
Query: 293 R--LDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRIC 331
+P + + L + ++ + +++
Sbjct: 117 ENPRLERPYTFKDFVLHP-------RSHKSRVKGYLRLKMT 150
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 6e-14
Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 22/143 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW------VRTRTIIDSPTPKWNEQ 415
++ + ++ GL D G +D Y V+T+TI S PKWNE+
Sbjct: 20 RIVRVRVIAGIGLAKK---DILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE 76
Query: 416 YTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475
+ V + VFD ++ RD +G+V + L L T+
Sbjct: 77 ILFRVHPQQHRLLFEVFDE------NRLT--RDDFLGQVDVPLYPLPTENPRLERPYTFK 128
Query: 476 LYP-----NGVKKMGEIHLAVRF 493
+ + + G + L + +
Sbjct: 129 DFVLHPRSHKSRVKGYLRLKMTY 151
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 4e-40
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 7/124 (5%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQ-- 97
L V V A ++P K G DP V V + K T+ + + NP WN++ F I
Sbjct: 9 LRVIVESASNIP-KTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLD 67
Query: 98 -SSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGEL 155
SS L + VKD + ++ +G L ++ P + L + KG +
Sbjct: 68 FSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPY--KLISLLNEKGQDTGATI 125
Query: 156 MLAV 159
L +
Sbjct: 126 DLVI 129
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 8e-18
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 14/133 (10%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEP-- 259
LRV V A ++ P K P+ V ++ +T+ +NP+WNE L F
Sbjct: 9 LRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKK-VDNELNPVWNEILEFDLRGIPL 66
Query: 260 -FEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKK 318
F L + V+D +++++G + L+ + + Y L + +G+
Sbjct: 67 DFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGD----QSRSLPYKLISLLNEKGQDTG 122
Query: 319 DTKFASRIHMRIC 331
T I + I
Sbjct: 123 AT-----IDLVIG 130
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 1e-17
Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 17/142 (11%)
Query: 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYT 417
S G+L + + +A + K G D + + +T+ + + P WNE
Sbjct: 3 SGSSGMLRVIVESASNIPKTKF----GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILE 58
Query: 418 WEVF----DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473
+++ D + + I V D + G ++ IG + L L D+ + Y L
Sbjct: 59 FDLRGIPLDFSSSLGIIVKDF------ETIG--QNKLIGTATVALKDLTGDQSRSLPYKL 110
Query: 474 LVLY-PNGVKKMGEIHLAVRFT 494
+ L G I L + +
Sbjct: 111 ISLLNEKGQDTGATIDLVIGYD 132
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 5e-40
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 38 QYLYVRVVKAKDL---PPKDVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAF 91
V V++A + D+ + DPYVE+ + + + TRHF NP WN+ F F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 92 SKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV 151
D Q +VLE+T+ D ++V D+ +G F ++ + + + +
Sbjct: 63 ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----VPFIFNQVTEMVL 117
Query: 152 RGELMLA 158
L +A
Sbjct: 118 EMSLEVA 124
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 2e-15
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 21/140 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTW 418
+ +L A + D T D Y RTR + P WNE + +
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 419 EVFDPCT-VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLY 477
+ V+ I + D ++ D +G +S+++ +
Sbjct: 63 ILDPNQENVLEITLMDANYV---------MDETLGTATFTVSSMKVGEKKEVPFIF---- 109
Query: 478 PNGVKKMGEIHLAVRFTCSS 497
++ E+ L + +S
Sbjct: 110 ----NQVTEMVLEMSLEVAS 125
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 2e-13
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 16/116 (13%)
Query: 201 YLRVNVIEAQDLQ---PTDKGRFPEVYVKAQLG---NQALRTRVSASRTINPMWNEDLMF 254
V V+ A + D P+ YV+ + + RTR + INP+WNE F
Sbjct: 4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRH-FNNDINPVWNETFEF 62
Query: 255 VAAEPFEEHLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEK 308
+ E L +T+ + V DE LG + + + +
Sbjct: 63 ILDPNQENVLEITLMDANYV---MDETLGTATFTV----SSMKVGEKKEVPFIFNQ 111
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 1e-39
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSS 99
+ + VV A+ L KD TGS DPYV V++G K T+ NP W + F F S
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHN-SSD 77
Query: 100 VLEVTVKDKD------------FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147
++V V D+D DDF+G+ + ++ + + WY L+ R
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM-------DVWYNLDKRT 130
Query: 148 GD-KVRGELMLAV 159
V G + L +
Sbjct: 131 DKSAVSGAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 3e-21
Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 28/159 (17%)
Query: 188 NIRSKVYLSPKLW--YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTIN 245
++ V W + + V+ AQ LQ DK + YV Q+G RT+ +N
Sbjct: 3 AVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKT-IYGNLN 61
Query: 246 PMWNEDLMFVAAEPFEEHLILTVED-----------RVAPNKDEVLGKCMIPLQYVDKRL 294
P+W E+ F + + + V D R D+ LG+ +I ++ + +
Sbjct: 62 PVWEENFHFECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM 120
Query: 295 DHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLE 333
D WYNL+K + + + I + I +E
Sbjct: 121 D------VWYNLDK-------RTDKSAVSGAIRLHISVE 146
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 7e-20
Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 9/146 (6%)
Query: 349 LRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSP 408
++ + + + ++ AQGL KD G++D Y + G+ RT+TI +
Sbjct: 4 VKQSVLDGTSKWSAKISITVVCAQGLQA---KDKTGSSDPYVTVQVGKTKKRTKTIYGNL 60
Query: 409 TPKWNEQYTWEVFDPCTVITIGVFD---NCHLHGGDKAGGARDSRIGKVRIRLSTLETDR 465
P W E + +E + I + V D + + D +G+ I + TL +
Sbjct: 61 NPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE- 119
Query: 466 VYTHSYPLLVLYPNGVKKMGEIHLAV 491
Y L G I L +
Sbjct: 120 -MDVWYNLDKRTDKSAVS-GAIRLHI 143
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 1e-38
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI 96
M L V V KAK ++ + YV +K+ N K TT + + P W Q F F +R+
Sbjct: 4 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 59
Query: 97 QSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR---KGDKVRG 153
L V V +K + D +G V L I + + +W L+ + ++ G
Sbjct: 60 DLG-LTVEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMADSEICG 115
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 1e-12
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 9/123 (7%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
L V V +A+ +K YV ++ N T R P W +D MF
Sbjct: 6 LLCVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIAV--RGSQPSWEQDFMFEINRL- 59
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDT 320
+ L + V ++ D ++G IPL+ + + + P W L+ ++ + T
Sbjct: 60 DLGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEGP--GEWLTLDSQAIMADSEICGT 116
Query: 321 KFA 323
K
Sbjct: 117 KDP 119
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 3e-37
Identities = 67/300 (22%), Positives = 117/300 (39%), Gaps = 67/300 (22%)
Query: 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGT---TRHFEKKTNPEWNQ 87
YD Q L V +++A +LP D+ G+ DPYV+V + K T+ K NP +N+
Sbjct: 14 YD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 71
Query: 88 VFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144
F F + L + V D D F K D +G +N + + +W L+
Sbjct: 72 QFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE-----EWRDLQ 126
Query: 145 DRKGD--KVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYL 202
+ + + G++ ++ A + L
Sbjct: 127 SAEKEEQEKLGDICFSLRYVPTAGK----------------------------------L 152
Query: 203 RVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA-----LRTRVSASRTINPMWNEDLMF-VA 256
V ++EA++L+ D G + YVK L +T + T+NP +NE F V
Sbjct: 153 TVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI-KKNTLNPYYNESFSFEVP 211
Query: 257 AEPFEE-HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH---------KPVNTRWYNL 306
E ++ +++TV D K++ +GK + L H +P+ +W+ L
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPI-AQWHTL 270
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 3e-19
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAF--S 92
L V +++AK+L DV G DPYV++ + K T + NP +N+ F+F
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 211
Query: 93 KDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRV--------PPDSPLAPQWYRL 143
++IQ + VTV D D + K+D +G+V N + P P+A QW+ L
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 270
Query: 144 EDRK 147
+ +
Sbjct: 271 QVEE 274
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 3e-18
Identities = 64/268 (23%), Positives = 106/268 (39%), Gaps = 60/268 (22%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMWNEDLMF--VA 256
L V +I+A +L D G + YVK L + T+V +T+NP++NE F
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPY 79
Query: 257 AEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEK 316
+E + L++ V D +K +++G+ +P+ +D V W +L+ E EK
Sbjct: 80 SELAGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVTEEWRDLQSAEKEEQEK 135
Query: 317 KKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMP 376
D F+ R PTA G L + IL A+ L
Sbjct: 136 LGDICFSLRYV-----------------------PTA--------GKLTVVILEAKNLKK 164
Query: 377 MKTKDGRGTTDAYCVAKY---GQKWV--RTRTIIDSPTPKWNEQYTWEV--FDPCTV-IT 428
M D G +D Y G++ +T ++ P +NE +++EV V +
Sbjct: 165 M---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVV 221
Query: 429 IGVFDNCHLHGGDKAGGARDSRIGKVRI 456
+ V D ++ IGKV +
Sbjct: 222 VTVL--------DYDKIGKNDAIGKVFV 241
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 4e-36
Identities = 84/323 (26%), Positives = 125/323 (38%), Gaps = 69/323 (21%)
Query: 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGT---TRHFEKKTNPEWNQ 87
Y L VR+++A DLP KD G DPYV++ + + T+ K NP +N+
Sbjct: 15 YL--YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 72
Query: 88 VFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144
F F + L +V D D F + D +G+V+ D PPD PL W +
Sbjct: 73 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDIL 129
Query: 145 DRKGDKV-RGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYLR 203
+ +K GEL + + P L
Sbjct: 130 EGGSEKADLGELNFS----------------------------------LCYLPTAGLLT 155
Query: 204 VNVIEAQDLQPTDKGRFPEVYVKAQLGNQA-----LRTRVSASRTINPMWNEDLMF-VAA 257
V +I+A +L+ D F + YVKA L ++ +T + T+NP +NE L+F VA
Sbjct: 156 VTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSI-KKNTLNPTYNEALVFDVAP 214
Query: 258 EPFEE-HLILTVEDRVAPNKDEVLGKCMIPLQYVDKR-LDH---------KPVNTRWYNL 306
E E L + V D +EV+G C + + D +H KPV W+ L
Sbjct: 215 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPV-EHWHQL 273
Query: 307 ----EKHIVVEGEKKKDTKFASR 325
+G K K S
Sbjct: 274 VEEKTLSSFTKGGKGLSEKENSE 296
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 5e-18
Identities = 52/273 (19%), Positives = 101/273 (36%), Gaps = 59/273 (21%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMWNEDLMF--VA 256
L V +++A DL D F + YVK L + +T+V +T+NP++NE F
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKV-HRKTLNPIFNETFQFSVPL 80
Query: 257 AEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEK 316
AE + L +V D ++ +++G+ ++ + + + P W ++ +
Sbjct: 81 AELAQRKLHFSVYDFDRFSRHDLIGQVVLD--NLLELAEQPPDRPLWRDILEG------- 131
Query: 317 KKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMP 376
+ ++ +C + + G+L + I+ A L
Sbjct: 132 GSEKADLGELNFSLC-------------------------YLPTAGLLTVTIIKASNLKA 166
Query: 377 MKTKDGRGTTDAYCVAKY---GQKWV--RTRTIIDSPTPKWNEQYTWEV--FDPCTV-IT 428
M D G +D Y A G++ +T ++ P +NE ++V V ++
Sbjct: 167 M---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLS 223
Query: 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461
I V D + IG R+
Sbjct: 224 IAVV--------DYDCIGHNEVIGVCRVGPEAA 248
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 3e-35
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKD 94
+ L V V KAK ++ + YV +K+ N + TT + + P W Q F F +
Sbjct: 11 GILSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAV-RGSQPSWEQDFMFEIN 66
Query: 95 RIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK 150
R+ L V V +K + D +G V L I + + +W L+ +
Sbjct: 67 RLDLG-LTVEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMA 118
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 7e-12
Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 22/166 (13%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
L V V +A+ +K YV ++ N T R P W +D MF
Sbjct: 15 LLCVGVKKAKFDGAQEKFNT---YVTLKVQNVESTTIAV--RGSQPSWEQDFMFEINRL- 68
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDT 320
+ L + V ++ D ++G IPL+ + + + P W L+ ++ + T
Sbjct: 69 DLGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEGP--GEWLTLDSQAIMADSEICGT 125
Query: 321 KFASRIHMRICLEGGYHVLDESTHYS--SDLRPTAKQLWKSSIGVL 364
K + +H + H+ D+ + W + L
Sbjct: 126 KDPT-----------FHRILLDAHFELPLDIPEEEARYWAKKLEQL 160
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 7e-34
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY------KGTTRHFEKKTNPEWNQV 88
+ + + V+V+ L KD+ G+ DPYV V + + T+ +K NP+WN+
Sbjct: 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEE 64
Query: 89 FAFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPD-SPLAPQWYRLEDR 146
F Q + V D++ +DDF+G+V L +P P P + + L R
Sbjct: 65 ILFRVLP-QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR 123
Query: 147 KGD-KVRGELMLAV 159
+V+G L L +
Sbjct: 124 SHKSRVKGYLRLKM 137
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 5e-16
Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 22/150 (14%)
Query: 355 QLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW------VRTRTIIDSP 408
+L V+ + ++ GL D G +D Y V+T+TI S
Sbjct: 1 ELHNDDTRVVRVKVIAGIGLAKK---DILGASDPYVRVTLYDPMSGILTSVQTKTIKKSL 57
Query: 409 TPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYT 468
PKWNE+ + V I VFD ++ RD +G+V + L L T+
Sbjct: 58 NPKWNEEILFRVLPQRHRILFEVFDE------NRLT--RDDFLGQVDVPLYPLPTENPRM 109
Query: 469 HSYPLLVLYP-----NGVKKMGEIHLAVRF 493
+ + + G + L + +
Sbjct: 110 ERPYTFKDFVLHPRSHKSRVKGYLRLKMTY 139
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 3e-15
Identities = 31/168 (18%), Positives = 66/168 (39%), Gaps = 17/168 (10%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA------LRTRVSASRTINPMWNEDLMF 254
+RV VI L D + YV+ L + ++T+ +++NP WNE+++F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKT-IKKSLNPKWNEEILF 67
Query: 255 VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYV--DKRLDHKPVNTRWYNLEKHIVV 312
P ++ V D +D+ LG+ +PL + + +P + + L
Sbjct: 68 R-VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP---- 122
Query: 313 EGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS 360
+ ++ + +++ DE+ + +L P L +
Sbjct: 123 ---RSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPD 167
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 1e-30
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-NPEWNQVFAFSKDRIQS 98
L V +V AK L D + DPYV++ + E PEWN+ F F+ +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GT 70
Query: 99 SVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELML 157
+ L+ + DKD +DD +G L V + + P Y + K ++ +GE+ +
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEP----VFVEGSIPPTAYNV--VKDEEYKGEIWV 124
Query: 158 AV 159
A+
Sbjct: 125 AL 126
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 3e-20
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L V ++ A+ L+ D + YV+ Q ++ V+ P WNE +F +E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-T 70
Query: 262 EHLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGE 315
L + +D +D+ +G+ IPL+ V + YN+ K +GE
Sbjct: 71 TELKAKIFDKDVG--TEDDAVGEATIPLEPV---FVEGSIPPTAYNVVKDEEYKGE 121
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-17
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 15/135 (11%)
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWE 419
G LE+ +++A+GL + D D Y + ++ TP+WNE + +
Sbjct: 9 HGTLEVVLVSAKGL---EDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT 65
Query: 420 VFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPN 479
V + T + +FD D D +G+ I L + + + +V +
Sbjct: 66 VSEGTTELKAKIFDK------DVGT--EDDAVGEATIPLEPVFVEGSIPPTAYNVV--KD 115
Query: 480 GVKKMGEIHLAVRFT 494
K GEI +A+ F
Sbjct: 116 EEYK-GEIWVALSFK 129
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 7e-30
Identities = 28/142 (19%), Positives = 44/142 (30%), Gaps = 8/142 (5%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEK 79
G + + L + V+ AK K PYVEV + T
Sbjct: 18 GMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNN 77
Query: 80 KTNPEWNQVFAFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAP 138
+P+W Q S L V D +G D+ E K + L
Sbjct: 78 TNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLK--SNNMKLEE 133
Query: 139 QWYRLE---DRKGDKVRGELML 157
L+ D++ + G+L +
Sbjct: 134 VVVTLQLGGDKEPTETIGDLSI 155
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 4e-18
Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 11/133 (8%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L++ VI A+ + P YV+ + Q+ +T + T +P W + L +
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEK-CNNTNSPKWKQPLTVIVTP--V 94
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTK 321
L V D +LG + + K + K L+ G K+ T+
Sbjct: 95 SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEV-VVTLQL-----GGDKEPTE 148
Query: 322 FASRIHMRICLEG 334
+ ICL+G
Sbjct: 149 TIGDLS--ICLDG 159
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 1e-12
Identities = 16/132 (12%), Positives = 43/132 (32%), Gaps = 16/132 (12%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
L++ +++A+ K Y + +T ++ +PKW + T V
Sbjct: 36 SQLQITVISAKLKEN---KKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIV- 91
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL---ETDRVYTHSYPLLVLYP 478
P + + V+ + D +G + + ++ L +
Sbjct: 92 TPVSKLHFRVWSH------QTLK--SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD 143
Query: 479 N-GVKKMGEIHL 489
+ +G++ +
Sbjct: 144 KEPTETIGDLSI 155
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 3e-29
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 31 YDLVEQMQY--LYVRVVKAKDL---PPKDVTGSCDPYVEVKMG---NYKGTTRHFEKKTN 82
+ +VE V V++A + D+ + DPYVE+ + + + TRHF N
Sbjct: 9 HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDIN 68
Query: 83 PEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWY 141
P WN+ F F D Q +VLE+T+ D ++V D+ +G F ++ + + P
Sbjct: 69 PVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQV 127
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 66.1 bits (160), Expect = 2e-11
Identities = 36/213 (16%), Positives = 65/213 (30%), Gaps = 19/213 (8%)
Query: 190 RSKVYLSPKLWYLRVNVIEAQDLQ---PTDKGRFPEVYVKAQLG---NQALRTRVSASRT 243
V V V+ A + D P+ YV+ + + RTR +
Sbjct: 9 HIIVEHQYS-HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRH-FNND 66
Query: 244 INPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRW 303
INP+WNE F+ E L +T+ D DE LG + + +
Sbjct: 67 INPVWNETFEFILDPNQENVLEITLMDA-NYVMDETLGTATFTVSSMKVGEKKEVPFIFN 125
Query: 304 YNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGV 363
+ + + + L + D+ + + ++ K +G
Sbjct: 126 QV----------TEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGP 175
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ 396
L++ +P+ G G V G
Sbjct: 176 KNSEGLHSARDVPVVAILGSGGGFRAMVGFSGV 208
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 51.1 bits (121), Expect = 1e-06
Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 13/115 (11%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTW 418
+ +L A + D T D Y RTR + P WNE + +
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77
Query: 419 EVFDP-CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472
+ V+ I + D ++ D +G +S+++ +
Sbjct: 78 ILDPNQENVLEITLMDANYVM---------DETLGTATFTVSSMKVGEKKEVPFI 123
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-25
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 28/148 (18%)
Query: 18 GGGKITGD-KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--------- 67
ITG+ +L YD + L + +++A++L P+D G DP+V+V +
Sbjct: 1 ASHPITGEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMV 56
Query: 68 -----GNYKGTTRHFEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKD-FVKDDFMGR 118
YK T++ +K NPEWNQ + S +++ LEVTV D D F +DF+G
Sbjct: 57 VQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGE 116
Query: 119 VLFDLNEIPKRVPPDSPLAPQWYRLEDR 146
VL DL+ P+WY L+++
Sbjct: 117 VLIDLSSTSHLDN-----TPRWYPLKEQ 139
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 4e-13
Identities = 29/142 (20%), Positives = 63/142 (44%), Gaps = 28/142 (19%)
Query: 189 IRSKVYLSPKLWY----LRVNVIEAQDLQPTDKGRFPEVYVKAQL--------------G 230
I ++ L + Y L +++++A++L P D + + +VK L
Sbjct: 5 ITGEIQLQ--INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASA 62
Query: 231 NQALRTRVSASRTINPMWNEDLMFVA---AEPFEEHLILTVEDRVAPNKDEVLGKCMIPL 287
RT+ +++NP WN+ +++ + + ++ L +TV D + ++ LG+ +I L
Sbjct: 63 EYKRRTKY-VQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121
Query: 288 QYVDKRLDHKPVNTRWYNLEKH 309
+ RWY L++
Sbjct: 122 SSTSHLDNT----PRWYPLKEQ 139
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 29/131 (22%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCV--------------AKYGQKWVRTRTIIDS 407
G L + IL A+ L+P D G +D + + RT+ + S
Sbjct: 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS 74
Query: 408 PTPKWNEQYTWEVFDP----CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET 463
P+WN+ ++ + + V+D D+ + +G+V I LS+
Sbjct: 75 LNPEWNQTVIYKSISMEQLMKKTLEVTVWDY------DRFS--SNDFLGEVLIDLSSTSH 126
Query: 464 DRVYTHSYPLL 474
YPL
Sbjct: 127 LDNTPRWYPLK 137
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-25
Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 25/141 (17%)
Query: 39 YLYVRVVKAKDLPPKDV-----------TGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWN 86
L +++ +A L P T DPY+ + + + + G T +K +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 87 QVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145
F +E+ V + DDF+ E+ + W LE
Sbjct: 67 DEFVTDVC--NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED---WIDLE- 120
Query: 146 RKGDKVRGELMLAVWM-GTQA 165
G++ + + + G+
Sbjct: 121 -----PEGKVYVIIDLSGSSG 136
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 6e-20
Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 29/145 (20%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEV-----------YVKAQLGNQALRTRVSASRTINPMWN 249
L++ + EA L+PT V Y+ + + + + +T +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 250 EDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309
++ + + L V D+ + C I + + + W +LE
Sbjct: 67 DEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQN--GSRHFEDWIDLEPE 122
Query: 310 IVVEGEKKKDTKFASRIHMRICLEG 334
++++ I L G
Sbjct: 123 --------------GKVYVIIDLSG 133
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 2e-15
Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 28/147 (19%)
Query: 362 GVLELGILNAQGLMPM--------KTKDGRGTTDAYCVAKYG-QKWVRTRTIIDSPTPKW 412
G+L++ I A L P + D Y + +T T + +P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 413 NEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL--ETDRVYTHS 470
++++ +V + I + VF + G D + I+ L R +
Sbjct: 66 HDEFVTDVCNG-RKIELAVFHD------APIG--YDDFVANCTIQFEELLQNGSRHFEDW 116
Query: 471 YPLLVLYPNGVKKMGEIHLAVRFTCSS 497
L + G++++ + + SS
Sbjct: 117 IDL--------EPEGKVYVIIDLSGSS 135
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 4e-24
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE----KKT-NPEWNQVFA 90
+ L V V AK+L P D G DPYV++K+ + + K + NPEWN+ F
Sbjct: 29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFR 88
Query: 91 FS-KDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147
F K+ + L V + D D ++DFMG + F ++E+ K W++L ++
Sbjct: 89 FQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV------DGWFKLLSQE 141
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 1e-14
Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 20/145 (13%)
Query: 182 GIEGLANIRSKVYLSPKLWY----LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQ 232
GI R ++Y+ L V V +A++L P D + YVK +L
Sbjct: 11 GILDSMERRGRIYIQ--AHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSES 68
Query: 233 ALRTRVSASRTINPMWNEDLMF-VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVD 291
+T+ ++NP WNE F + + L + + D ++++ +G +
Sbjct: 69 KQKTKT-IKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGIS--- 124
Query: 292 KRLDHKPVNTRWYNLEKHIVVEGEK 316
L V W+ L EGE
Sbjct: 125 -ELQKAGV-DGWFKLLSQ--EEGEY 145
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 6e-09
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 19/120 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCV-----AKYGQKWVRTRTIIDSPTPKWNEQY 416
VL + + +A+ L+PM D G +D Y + +T+TI S P+WNE +
Sbjct: 31 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 87
Query: 417 TWEVF--DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
+++ D +++ ++D D R+ +G + +S L+ V + LL
Sbjct: 88 RFQLKESDKDRRLSVEIWDW------DLTS--RNDFMGSLSFGISELQKAGV-DGWFKLL 138
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 5e-24
Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGT---TRH 76
G+I + + Y+ Q L V+++KA++LP KD +G+ DP+V++ + K T+
Sbjct: 13 GRI---QFSVGYN--FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKV 67
Query: 77 FEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPP 132
K NP WN+ F F +++ +L + V D D F ++D +G V LN++
Sbjct: 68 KRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL---- 123
Query: 133 DSPLAPQWYRLEDRKGDK 150
+ + W L+
Sbjct: 124 -TQMQTFWKDLKPSGPSS 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-15
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 21/126 (16%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMW 248
+ Y L V +++AQ+L D + +VK L L T+V + +NP W
Sbjct: 18 SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKV-KRKNLNPHW 76
Query: 249 NEDLMF---VAAEPFEEHLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRW 303
NE +F + + L L V DR ++++ +G+ IPL ++D + T W
Sbjct: 77 NETFLFEGFPYEKVVQRILYLQVLDYDRF--SRNDPIGEVSIPL----NKVDLTQMQTFW 130
Query: 304 YNLEKH 309
+L+
Sbjct: 131 KDLKPS 136
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 18/119 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIIDSPTPKWNEQYTW 418
L + I+ AQ L D GT+D + + + T+ + P WNE + +
Sbjct: 26 STLTVKIMKAQELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82
Query: 419 EVFDPCTVIT----IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473
E F V+ + V D D+ R+ IG+V I L+ ++ ++ T L
Sbjct: 83 EGFPYEKVVQRILYLQVLDY------DRFS--RNDPIGEVSIPLNKVDLTQMQTFWKDL 133
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 7e-24
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 22/145 (15%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYKGTTR-- 75
G++ + +D + L V ++ AKDLP ++ +PYV++ R
Sbjct: 8 GQL---SIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT 62
Query: 76 HFEKKT-NPEWNQVFAF---SKDRIQSSVLEVTVKDKDFV---KDDFMGRVLFDLNEIPK 128
KKT P+WNQ F + + + +LE+T+ D+ V + +F+G +L +L
Sbjct: 63 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA-- 120
Query: 129 RVPPDSPLAPQWYRLEDRKGDKVRG 153
P WY+L+ G
Sbjct: 121 ----LLDDEPHWYKLQTHDSGPSSG 141
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 4e-15
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 24/129 (18%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASRTINP 246
KLW+ L V ++ A+DL + GR YVK RT+ +T+ P
Sbjct: 13 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKT-VKKTLEP 71
Query: 247 MWNEDLMFVAAEPFEE----HLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVN 300
WN+ ++ + E L +T+ + RV + E LG+ +I L+ LD +P
Sbjct: 72 KWNQTFIY-SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL--LDDEP-- 126
Query: 301 TRWYNLEKH 309
WY L+ H
Sbjct: 127 -HWYKLQTH 134
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-06
Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 19/122 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVA-----KYGQKWVRTRTIIDSPTPKWNEQY 416
L + IL A+ L + + Y + + RT+T+ + PKWN+ +
Sbjct: 21 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 77
Query: 417 TWEVFDPCTVIT----IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472
+ I ++D + +G++ I L T D H Y
Sbjct: 78 IYSPVHRREFRERMLEITLWDQ------ARVREEESEFLGEILIELETALLDDE-PHWYK 130
Query: 473 LL 474
L
Sbjct: 131 LQ 132
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 8e-24
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 16/148 (10%)
Query: 6 EEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEV 65
+E K GK+ + + YD Q L V +++A +LP D+ G+ DPYV+V
Sbjct: 15 SMVEKEEPKEEEKLGKL---QYSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKV 69
Query: 66 KMGNYKGTTR--HFEKKT-NPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRV 119
+ K +KT NP +N+ F F + L + V D D F K D +G
Sbjct: 70 FLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEF 129
Query: 120 LFDLNEIPKRVPPDSPLAPQWYRLEDRK 147
+N + +W L+ +
Sbjct: 130 KVPMNTVDFGHV-----TEEWRDLQSAE 152
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-13
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMW 248
L Y L V +I+A +L D G + YVK L + T+V +T+NP++
Sbjct: 34 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVF 92
Query: 249 NEDLMFV--AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306
NE F +E + L++ V D +K +++G+ +P+ +D V W +L
Sbjct: 93 NEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVTEEWRDL 148
Query: 307 E 307
+
Sbjct: 149 Q 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 4e-06
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAK---YGQKWVRTRTIIDSPTPKWNEQYTW 418
L +GI+ A L + D GT+D Y +K T+ + P +NEQ+T+
Sbjct: 42 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 98
Query: 419 EVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
+V + + V+D D+ + IG+ ++ ++T++ V L
Sbjct: 99 KVPYSELGGKTLVMAVYDF------DRFS--KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 9e-24
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 16/131 (12%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGT---TRH 76
GK+ + + YD Q L V +++A +LP D+ G+ DPYV+V + K T+
Sbjct: 21 GKL---QYSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV 75
Query: 77 FEKKTNPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPD 133
K NP +N+ F F + L + V D D F K D +G +N +
Sbjct: 76 HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV-- 133
Query: 134 SPLAPQWYRLE 144
+W L+
Sbjct: 134 ---TEEWRDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 5e-14
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMW 248
L Y L V +I+A +L D G + YVK L + T+V +T+NP++
Sbjct: 26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVF 84
Query: 249 NEDLMFV--AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306
NE F +E + L++ V D +K +++G+ +P+ +D V W +L
Sbjct: 85 NEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVTEEWRDL 140
Query: 307 E 307
+
Sbjct: 141 Q 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAK---YGQKWVRTRTIIDSPTPKWNEQYTW 418
L +GI+ A L + D GT+D Y +K T+ + P +NEQ+T+
Sbjct: 34 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Query: 419 EVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
+V + + V+D D+ + IG+ ++ ++T++ V L
Sbjct: 91 KVPYSELGGKTLVMAVYDF------DRFS--KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 97.0 bits (241), Expect = 1e-23
Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 21/133 (15%)
Query: 39 YLYVRVVKAKDLPPKDV----------TGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQ 87
YL VR+ +A L P DPY+ V + + G T +K P +N+
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 88 VFAFSKDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146
F + LE+ V + + D F+ E+ + S W LE
Sbjct: 90 EFCA--NVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRT-TGASDTFEGWVDLEP- 145
Query: 147 KGDKVRGELMLAV 159
G++ + +
Sbjct: 146 -----EGKVFVVI 153
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 93.9 bits (233), Expect = 1e-22
Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 26/144 (18%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEV----------YVKAQLGNQALRTRVSASRTINPMWNE 250
YLRV + EA LQPT + Y+ + + + +T P +NE
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 251 DLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHI 310
+ + HL L V D + C + Q + + W +LE
Sbjct: 90 EFCANVTDG--GHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPE- 146
Query: 311 VVEGEKKKDTKFASRIHMRICLEG 334
++ + I L G
Sbjct: 147 -------------GKVFVVITLTG 157
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 3e-15
Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 31/167 (18%)
Query: 342 STHYSSDL--RPTAKQLWKSSIGVLELGILNAQGLMPM-------KTKDGRGTTDAYCVA 392
H+SS L R + G L + I A GL P K G D Y
Sbjct: 7 HHHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTV 66
Query: 393 KYGQKWV-RTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRI 451
Q V +T T + P +NE++ V D + + VF L D +
Sbjct: 67 SVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-GHLELAVFHETPLG--------YDHFV 117
Query: 452 GKVRIRLSTL----ETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494
++ L + L + G++ + + T
Sbjct: 118 ANCTLQFQELLRTTGASDTFEGWVDL--------EPEGKVFVVITLT 156
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 7e-23
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 20/135 (14%)
Query: 22 ITGD-KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEV-----KMGNYKGTTR 75
++G + +D + L V ++ AKDLP ++ +PYV++ + K T+
Sbjct: 3 LSGQLSIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK 60
Query: 76 HFEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKDFV---KDDFMGRVLFDLNEIPKR 129
+K P+WNQ F + + + +LE+T+ D+ V + +F+G +L +L
Sbjct: 61 TVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA--- 117
Query: 130 VPPDSPLAPQWYRLE 144
P WY+L+
Sbjct: 118 ---LLDDEPHWYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 6e-16
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 26/136 (19%)
Query: 189 IRSKVYLSPKLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTR 237
+ ++ + LW+ L V ++ A+DL + GR YVK RT+
Sbjct: 3 LSGQLSIK--LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK 60
Query: 238 VSASRTINPMWNEDLMFVAAEPFEE----HLILTV--EDRVAPNKDEVLGKCMIPLQYVD 291
+T+ P WN+ ++ E L +T+ + RV + E LG+ +I L+
Sbjct: 61 T-VKKTLEPKWNQTFIYSPV-HRREFRERMLEITLWDQARVREEESEFLGEILIELETAL 118
Query: 292 KRLDHKPVNTRWYNLE 307
LD +P WY L+
Sbjct: 119 --LDDEPH---WYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 19/121 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVA-----KYGQKWVRTRTIIDSPTPKWNEQY 416
L + IL A+ L + + Y + + RT+T+ + PKWN+ +
Sbjct: 18 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 74
Query: 417 TWEVFDPCT----VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472
+ ++ I ++D + +G++ I L T D H Y
Sbjct: 75 IYSPVHRREFRERMLEITLWDQ------ARVREEESEFLGEILIELETALLDDE-PHWYK 127
Query: 473 L 473
L
Sbjct: 128 L 128
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 2e-22
Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 17/148 (11%)
Query: 17 LGGGKITGD-KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKM-----GN 69
LG +TG + Y+ +Q Q L V V + L D +PYV+ +
Sbjct: 3 LGNIFVTGRIAFSLKYE--QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQ 60
Query: 70 YKGTTRHFEKKTNPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEI 126
K T NP +++ + + + L+ +V F ++ F+G ++
Sbjct: 61 GKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS- 119
Query: 127 PKRVPPDSPLAPQWYRLEDRKGDKVRGE 154
D L L + + G
Sbjct: 120 ---WKLDKKL-DHCLPLHGKISAESEGH 143
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-10
Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 21/145 (14%)
Query: 185 GLANIRSKVYLSPKLWY------LRVNVIEAQDLQPTDKGR-FPEVYVKAQL-----GNQ 232
G + ++ S L Y L V+V E L D+ + YVK L
Sbjct: 4 GNIFVTGRIAFS--LKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQG 61
Query: 233 ALRTRVSASRTINPMWNEDLMFV--AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYV 290
+T + T+NP+++E L + + + L +V ++ LG+ I +
Sbjct: 62 KRKTSI-KRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQM--- 117
Query: 291 DKRLDHKPVNTRWYNLEKHIVVEGE 315
L I E E
Sbjct: 118 -DSWKLDKKLDHCLPLHGKISAESE 141
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 18/122 (14%), Positives = 48/122 (39%), Gaps = 22/122 (18%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYC-------VAKYGQKWVRTRTIIDSPTPKWNE 414
L + + L + + ++ Y ++ G++ +T D+ P ++E
Sbjct: 23 QSLVVHVKECHQLAYAD--EAKKRSNPYVKTYLLPDKSRQGKR--KTSIKRDTVNPLYDE 78
Query: 415 QYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSY 471
+E+ + + V+ + + G R++ +G+ I++ + + D+ H
Sbjct: 79 TLRYEIPESLLAQRTLQFSVWHH------GRFG--RNTFLGEAEIQMDSWKLDKKLDHCL 130
Query: 472 PL 473
PL
Sbjct: 131 PL 132
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 2e-22
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTT 74
G + + + YD + L +++AK L P D G DPYV++ + + K T
Sbjct: 16 GAL---EFSLLYD--QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRT 70
Query: 75 RHFEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRV 130
+ NP WN+ + +++ +Q L ++V D+D F ++F+G F L ++
Sbjct: 71 KTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ 130
Query: 131 PPDSPLAPQWYRLE 144
+ LE
Sbjct: 131 RKN-----FNICLE 139
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-13
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 19/127 (14%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASRTINP 246
L Y L+ +I A+ L+P D + YVK L + LRT+ T NP
Sbjct: 21 SLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKT-LRNTRNP 79
Query: 247 MWNEDLMFVA---AEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRW 303
+WNE L + + + L ++V D +E +G+ L K+L
Sbjct: 80 VWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL----KKLKANQRKNFN 135
Query: 304 YNLEKHI 310
LE+ I
Sbjct: 136 ICLERVI 142
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVA-----KYGQKWVRTRTIIDSPTPKWNEQY 416
L+ I+ A+GL PM D G D Y +RT+T+ ++ P WNE
Sbjct: 29 SNLQCTIIRAKGLKPM---DSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETL 85
Query: 417 TWEVFDPC----TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472
+ + I V D DK G + IG+ R L L+ ++ +
Sbjct: 86 QYHGITEEDMQRKTLRISVCDE------DKFG--HNEFIGETRFSLKKLKANQRKNFNIC 137
Query: 473 L 473
L
Sbjct: 138 L 138
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 2e-22
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYKGTTRHFEKKTNPEWNQVFAFSKDRIQ 97
+ + V+ AK+L KD DP+ ++ + +T + +P+WNQ + +
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD 66
Query: 98 SSVLEVTVKDKDFVKDD----FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-----G 148
S + ++V + + F+G V N I + + RL+ K
Sbjct: 67 S--ITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTG------YQRLDLCKLNPSDT 118
Query: 149 DKVRGELML 157
D VRG++++
Sbjct: 119 DAVRGQIVV 127
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 5e-13
Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 11/122 (9%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQALRTRVSASRTINPMWNEDLMFVAAEP 259
+R+ V+ A++L D R P+ + K + Q T T++P WN+
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDT-VKNTLDPKWNQHYDLY--VG 63
Query: 260 FEEHLILTV--EDRVAPNKDE-VLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEK 316
+ + ++V ++ + LG + + K + +L K + +
Sbjct: 64 KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAIS---RLKDTGYQRLDLCKLNPSDTDA 120
Query: 317 KK 318
+
Sbjct: 121 VR 122
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 13/134 (9%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKWVRTRTIIDSPTPKWNEQYTWEVF 421
+ L +L A+ L D D + + T T+ ++ PKWN+ Y V
Sbjct: 7 IRLTVLCAKNLAKK---DFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV- 62
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL--ETDRVYTHSYPLLVLYPN 479
ITI V+++ +H AG +G VR+ + + D Y + +
Sbjct: 63 GKTDSITISVWNHKKIHKKQGAG-----FLGCVRLLSNAISRLKDTGYQRLDLCKLNPSD 117
Query: 480 GVKKMGEIHLAVRF 493
G+I ++++
Sbjct: 118 TDAVRGQIVVSLQT 131
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 4e-22
Identities = 24/142 (16%), Positives = 47/142 (33%), Gaps = 18/142 (12%)
Query: 11 KETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--- 67
+ +G +I ++ YD E+ + + +++ +L + V +
Sbjct: 21 SDESEAVGATRI---QIALKYD--EKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPC 75
Query: 68 ---GNYKGTTRHFEKKTNPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLF 121
TR + +N+VF S + L V V D ++ +G
Sbjct: 76 SESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQI 135
Query: 122 DLNEIPKRVPPDSPLAPQWYRL 143
L E V + +WY L
Sbjct: 136 SLAE----VCRSGERSTRWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 8e-13
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 18/123 (14%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL------GNQALRTRVSASRTIN 245
L Y + +I+ +L + + +V ++ + RTR +
Sbjct: 35 ALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPL-DASDT 93
Query: 246 PMWNEDLMF-VAAEPFEEH-LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRW 303
++NE ++ + L + V + +E LG I L V + +TRW
Sbjct: 94 LVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRS---GERSTRW 150
Query: 304 YNL 306
YNL
Sbjct: 151 YNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 25/125 (20%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYC------VAKYGQKWVRTRTIIDSPTPKWNEQ 415
+ I+ L + + ++ RTR + S T +NE
Sbjct: 43 KQFAILIIQLSNLSAL---LQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEV 99
Query: 416 YTWEVFDPCTVIT-----IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE-TDRVYTH 469
+ + + + V D++ + +G +I L+ + + T
Sbjct: 100 FWVSM--SYPALHQKTLRVDVCTT------DRSH--LEECLGGAQISLAEVCRSGERSTR 149
Query: 470 SYPLL 474
Y LL
Sbjct: 150 WYNLL 154
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 1e-21
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 25/144 (17%)
Query: 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-------NPEWN 86
V L V +++AK+L DV G DPYV++ + + R +KKT NP +N
Sbjct: 21 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHL--MQNGKRLKKKKTTIKKNTLNPYYN 78
Query: 87 QVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRV--------PPDSP 135
+ F+F ++IQ + VTV D D K+D +G+V N + P P
Sbjct: 79 ESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRP 138
Query: 136 LAPQWYRLEDRKGDKVRGELMLAV 159
+A QW+ L+ + + MLAV
Sbjct: 139 IA-QWHTLQVEE----EVDAMLAV 157
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 6e-14
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA-----LRTRVSASRTINPMWNEDLMF-V 255
L V ++EA++L+ D G + YVK L +T + T+NP +NE F V
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI-KKNTLNPYYNESFSFEV 85
Query: 256 AAEPFEEH-LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH---------KPVNTRWYN 305
E ++ +++TV D K++ +GK + L H +P+ +W+
Sbjct: 86 PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPI-AQWHT 144
Query: 306 LE 307
L+
Sbjct: 145 LQ 146
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 1e-21
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 21/127 (16%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-------NPEWNQV 88
+ V ++KA++L D+ G+ DPYV+V + R +KKT NP +N+
Sbjct: 14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWL--MYKDKRVEKKKTVTKKRNLNPIFNES 71
Query: 89 FAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVP--------PDSPLA 137
FAF ++++ + + +TV DKD ++D +G++ P V P P+A
Sbjct: 72 FAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA 131
Query: 138 PQWYRLE 144
QW++L+
Sbjct: 132 -QWHQLK 137
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-14
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 18/122 (14%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALR-----TRVSASRTINPMWNEDLMF-V 255
+ VN+I+A++L+ D G + YVK L + R T R +NP++NE F +
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVT-KKRNLNPIFNESFAFDI 76
Query: 256 AAEPFEEH-LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH---------KPVNTRWYN 305
E E +I+TV D+ ++++V+GK + + + H +PV +W+
Sbjct: 77 PTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPV-AQWHQ 135
Query: 306 LE 307
L+
Sbjct: 136 LK 137
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 2e-21
Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-------NPEWNQVFAF- 91
L V +++ L D G DP+V++ + + + KT NPE+N+ F +
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWL--KPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 92 -SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVP--------PDSPLAPQWY 141
+ L+++V D D +D++G ++ +R+ D + +W+
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE-RWH 155
Query: 142 RLEDRK 147
+L++
Sbjct: 156 QLQNEN 161
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 4e-14
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 24/131 (18%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALR-----TRVSASRTINP 246
L Y L V +I L D + + +VK L + T++ +T+NP
Sbjct: 29 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQI-KKKTLNP 87
Query: 247 MWNEDLMF-VAAEPFEE-HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH-------- 296
+NE+ + + + L ++V D ++ +G C + + +RL H
Sbjct: 88 EFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNK 147
Query: 297 -KPVNTRWYNL 306
K + RW+ L
Sbjct: 148 DKKI-ERWHQL 157
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 4e-21
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTG-SCDPYVEVKMGNYKGT---TR 75
G + + Y+ + + V + +A+ LP D + DPY+++ + K TR
Sbjct: 9 GTL---FFSLEYN--FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTR 63
Query: 76 HFEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIP 127
K +P +++ F F +IQ L T+ D F +DD +G VL L+ I
Sbjct: 64 VLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-10
Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 17/125 (13%)
Query: 198 KLWY------LRVNVIEAQDLQPTD-KGRFPEVYVKAQL---GNQALRTRVSASRTINPM 247
L Y VN+ EA+ L D + + Y+K + ++TRV +T++P
Sbjct: 14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRV-LRKTLDPA 72
Query: 248 WNEDLMFVAAEPFEEH---LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWY 304
++E F + L T+ ++D+++G+ +IPL ++ +
Sbjct: 73 FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE---LSEGKMLMNR 129
Query: 305 NLEKH 309
+
Sbjct: 130 EIISG 134
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 7e-21
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 21/124 (16%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-------NPEWNQVFAF- 91
L V V+KA+ LP DV+G DPYV+V + Y R +KKT N +N++F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNL--YHAKKRISKKKTHVKKCTPNAVFNELFVFD 89
Query: 92 -SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVP--------PDSPLAPQWY 141
+ ++ +E V D + +++ +GR++ P +A +W+
Sbjct: 90 IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWH 148
Query: 142 RLED 145
L D
Sbjct: 149 MLCD 152
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-13
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALR-----TRVSASRTINPMWNEDLMF-V 255
L V V++A+ L +D + YVK L + R T V T N ++NE +F +
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHV-KKCTPNAVFNELFVFDI 90
Query: 256 AAEPFEE-HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH---------KPVNTRWYN 305
E EE + V D +++EV+G+ ++ H + + +W+
Sbjct: 91 PCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQI-AKWHM 149
Query: 306 L 306
L
Sbjct: 150 L 150
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 3e-20
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 23/141 (16%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPP-------KDVTGSCDPYVEVKMGNYKG 72
G + ++ YD +L VRV++A+DLPP + +PYV++ + +
Sbjct: 13 GML---HFSTQYD--LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQK 67
Query: 73 T---TRHFEKKTNPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEI 126
T K P + + + F Q L +TV D D F + +G+V L E+
Sbjct: 68 NSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV 127
Query: 127 PKRVPPDSPLAPQWYRLEDRK 147
W L
Sbjct: 128 DL-----VKGGHWWKALIPSG 143
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 3e-10
Identities = 34/128 (26%), Positives = 46/128 (35%), Gaps = 23/128 (17%)
Query: 198 KLWY------LRVNVIEAQDLQPT-------DKGRFPEVYVKAQL---GNQALRTRVSAS 241
Y L V VIEA+DL P YVK L + +T V
Sbjct: 18 STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKR- 76
Query: 242 RTINPMWNEDLMFV--AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPV 299
+T P++ E F E L+LTV D ++ V+GK +PL +D
Sbjct: 77 KTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPL----CEVDLVKG 132
Query: 300 NTRWYNLE 307
W L
Sbjct: 133 GHWWKALI 140
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 18/122 (14%)
Query: 362 GVLELGILNAQGLMPM----KTKDGRGTTDAYCVAKY---GQKWVRTRTIIDSPTPKWNE 414
L + ++ A+ L P ++ ++ Y + +T + P + E
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 415 QYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSY 471
+YT+E+ + + V D DK R IGKV + L ++ +
Sbjct: 86 RYTFEIPFLEAQRRTLLLTVVDF------DKFS--RHCVIGKVSVPLCEVDLVKGGHWWK 137
Query: 472 PL 473
L
Sbjct: 138 AL 139
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 3e-20
Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 16 HLGGGKITGD-KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GN 69
H K+ G +L + D Q + L + +++ K L K G+CDPYV++ +
Sbjct: 6 HHHSHKVQGAGQLRLSID--AQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRL 62
Query: 70 YKGTTRHFEKKTNPEWNQVFAFS-KDRIQSSVLEVTVKDKDFV--KDDFMGRVLFDLNEI 126
T+ +P +++ F F ++ L VTV ++ + +G + F + +
Sbjct: 63 RHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122
Query: 127 PKRVPPDSPLAPQWYRLEDRK 147
PD ++ WY L
Sbjct: 123 LT---PDKEIS-GWYYLLGEH 139
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 9e-12
Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Query: 189 IRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASRT 243
+ ++ + + L +++IE + L G + YVK L + +T+
Sbjct: 16 GQLRLSIDAQDRVLLLHIIEGKGLISKQPG-TCDPYVKISLIPEDSRLRHQKTQT-VPDC 73
Query: 244 INPMWNEDLMF-VAAEPFEEHLILTVEDRVAPNK-DEVLGKCMIPLQYVDKRLDHKPVNT 301
+P ++E F V E ++ L++TV +R + ++ ++G ++ K + +
Sbjct: 74 RDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVK--SLLTPDKEI-S 130
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRI 326
WY L G K K A R
Sbjct: 131 GWYYLLGE--HLGR-TKHLKVARRR 152
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-05
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 23/123 (18%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYC-------VAKYGQKWVRTRTIIDSPTPKWNE 414
VL L I+ +GL+ GT D Y ++ + +T+T+ D P ++E
Sbjct: 27 RVLLLHIIEGKGLISK----QPGTCDPYVKISLIPEDSRLRHQ--KTQTVPDCRDPAFHE 80
Query: 415 QYTWEVF--DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET-DRVYTHSY 471
+ + V D + + V++ + IG + + +L T D+ + Y
Sbjct: 81 HFFFPVQEEDDQKRLLVTVWNRASQ-------SRQSGLIGCMSFGVKSLLTPDKEISGWY 133
Query: 472 PLL 474
LL
Sbjct: 134 YLL 136
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 3e-20
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 21/141 (14%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEV-----KMGNYKGTT 74
G+I +LT + Q L V V ++L GS DPYV + K + + T
Sbjct: 11 GQI---QLTIRHS--SQRNKLIVVVHACRNLIAFSEDGS-DPYVRMYLLPDKRRSGRRKT 64
Query: 75 RHFEKKTNPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDD--FMGRVLFDLNEIPKR 129
+K NP ++Q F F S +Q L+V VK+ F+ D +G+VL L
Sbjct: 65 HVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELA 124
Query: 130 VPPDSPLAPQWYRLEDRKGDK 150
QWY L + G
Sbjct: 125 KG-----WTQWYDLTEDSGPS 140
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-11
Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 25/129 (19%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASRTINP 246
+ + L V V ++L + + YV+ L + +T V + +T+NP
Sbjct: 16 TIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHV-SKKTLNP 73
Query: 247 MWNEDLMFVAAEPFEE----HLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVN 300
++++ F E L + V +LGK ++ L +
Sbjct: 74 VFDQSFDFSV--SLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVAL----ASEELAKGW 127
Query: 301 TRWYNLEKH 309
T+WY+L +
Sbjct: 128 TQWYDLTED 136
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/123 (13%), Positives = 42/123 (34%), Gaps = 22/123 (17%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYC-------VAKYGQKWVRTRTIIDSPTPKWNE 414
L + + + L+ +D Y + G++ +T + P +++
Sbjct: 24 NKLIVVVHACRNLIAF----SEDGSDPYVRMYLLPDKRRSGRR--KTHVSKKTLNPVFDQ 77
Query: 415 QYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSY 471
+ + V + + V ++ +GKV + L++ E + +T Y
Sbjct: 78 SFDFSVSLPEVQRRTLDVAVKNS------GGFLSKDKGLLGKVLVALASEELAKGWTQWY 131
Query: 472 PLL 474
L
Sbjct: 132 DLT 134
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 4e-20
Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 20/135 (14%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM----GNYKGTTR 75
K+ YD Q L+V ++A + G CD YV+ + G+ + T
Sbjct: 13 PKL---HYCLDYD--CQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTA 64
Query: 76 HFEKKTNPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPP 132
+++ + W + +++ + ++ L +T++ D F + G + L+ +
Sbjct: 65 LKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGA 124
Query: 133 DSPLAPQWYRLEDRK 147
QW L+
Sbjct: 125 A-----QWGELKTSG 134
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 4e-10
Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 20/122 (16%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL----GNQALRTRVSASRTINPM 247
L Y L V +EA + + YV+ + G+ +T + R ++
Sbjct: 18 CLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTAL-KKRQLHTT 73
Query: 248 WNEDLMF-VAAEPFEEH-LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYN 305
W E L+ +A E L LT+ ++ V G+ + L +W
Sbjct: 74 WEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGL----DGTSVPLGAAQWGE 129
Query: 306 LE 307
L+
Sbjct: 130 LK 131
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 6e-20
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 19/118 (16%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEV-------KMGNYKGTTRHFEKKTNPEWNQVFAF- 91
L++ V+ KDL +D +PYV+ K K T+ K NP +N++ +
Sbjct: 22 LFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRK--TKISRKTRNPTFNEMLVYS 78
Query: 92 --SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146
SK+ ++ L+++V + ++ F+G + L + +WY+L
Sbjct: 79 GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKD----FNLSKET-VKWYQLTAA 131
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-10
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 198 KLWY----LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASRTINPMW 248
+ Y L + V+ +DL D P YVK L +T++ + +T NP +
Sbjct: 14 SVSYRNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKI-SRKTRNPTF 71
Query: 249 NEDLMF--VAAEPFEEH-LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYN 305
NE L++ + E + L L+V + ++ LG +PL+ + L + +WY
Sbjct: 72 NEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFN--LSKET--VKWYQ 127
Query: 306 LE 307
L
Sbjct: 128 LT 129
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 25/124 (20%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYC-------VAKYGQKWVRTRTIIDSPTPKWNE 414
G L + +++ + L+ DG + Y K ++ +T+ + P +NE
Sbjct: 20 GTLFIMVMHIKDLVTE---DG-ADPNPYVKTYLLPDTHKTSKR--KTKISRKTRNPTFNE 73
Query: 415 QYTWEVFDPCTVIT----IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHS 470
+ + T+ + V + + +G + + L +
Sbjct: 74 MLVYSGYSKETLRQRELQLSVLSA------ESLR--ENFFLGGITLPLKDFNLSKETVKW 125
Query: 471 YPLL 474
Y L
Sbjct: 126 YQLT 129
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 3e-17
Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 21/145 (14%)
Query: 17 LGGGKITGDKLTST-------YDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKM- 67
G ++ G + +T + ++ L V V++A+ L K + + PYV+V +
Sbjct: 2 PGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLL 61
Query: 68 -GNYKGTTR--HFEKKT-NPEWNQVFAFSKDRIQSSVLEVTVK-DKD-FVKDDFMGRVLF 121
+ +KT +P + Q F + Q VL+V V D FMG
Sbjct: 62 ENGACIAKKKTRIARKTLDPLYQQSLVFDES-PQGKVLQVIVWGDYGRMDHKCFMGVAQI 120
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDR 146
L E + S + WY+L
Sbjct: 121 LLEE----LDLSSMV-IGWYKLFPP 140
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-10
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 17/114 (14%)
Query: 202 LRVNVIEAQDLQPTDKGR-FPEVYVKAQL-----GNQALRTRVSASRTINPMWNEDLMFV 255
L V VI A+ L + P YVK L +TR+ A +T++P++ + L+F
Sbjct: 32 LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRI-ARKTLDPLYQQSLVF- 89
Query: 256 AAEPFEEHLILTV---EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306
P + L + V R+ +G I L + LD + WY L
Sbjct: 90 DESPQGKVLQVIVWGDYGRMD--HKCFMGVAQILL----EELDLSSMVIGWYKL 137
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 3e-06
Identities = 18/118 (15%), Positives = 39/118 (33%), Gaps = 14/118 (11%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAK--YGQKWV---RTRTIIDSPTPKWNEQY 416
G LE+ ++ A+ L + T Y + +TR + P + +
Sbjct: 30 GQLEVEVIRARSLTQKP--GSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSL 87
Query: 417 TWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
++ V+ + V+ + + +G +I L L+ + Y L
Sbjct: 88 VFDESPQGKVLQVIVWGD-----YGRMD--HKCFMGVAQILLEELDLSSMVIGWYKLF 138
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 77.3 bits (189), Expect = 8e-15
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFS-KD 94
+ +L V +A+ L T + D Y++V G + T NP W F
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTTAT-DAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVL 450
Query: 95 RIQSSVLEVTVKDKD-FVKDDFMGRVLFDL 123
L V V D D DD +G
Sbjct: 451 LSTGGPLRVQVWDADYGWDDDLLGSCDRSP 480
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 1e-09
Identities = 25/113 (22%), Positives = 36/113 (31%), Gaps = 11/113 (9%)
Query: 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMF-V 255
L +L V+ A+ L D + Y+K G Q RT V NP W + + F
Sbjct: 391 RGLAHLVVSNFRAEHL-WGDYTTATDAYLKVFFGGQEFRTGV-VWNNNNPRWTDKMDFEN 448
Query: 256 AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEK 308
L + V D D++LG C + L
Sbjct: 449 VLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH--------SGFHEVTCELNH 493
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 8e-05
Identities = 30/201 (14%), Positives = 58/201 (28%), Gaps = 34/201 (16%)
Query: 300 NTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRP---TAKQL 356
N + L + I + + SR C G + +S
Sbjct: 333 NPKREALRQAISHYIMSRARWQNCSRP----CRSGQHKSSHDSCQCECQDSKVTNQDCCP 388
Query: 357 WKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQY 416
+ + L + A+ L T TDAY +G + RT + ++ P+W ++
Sbjct: 389 RQRGLAHLVVSNFRAEHLWGDYTTA----TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKM 444
Query: 417 TWEVFD--PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
+E + + V+ D G D +G + + + L
Sbjct: 445 DFENVLLSTGGPLRVQVW--------DADYGWDDDLLGSCDRSPHSGFHE----VTCEL- 491
Query: 475 VLYPNGVKKMGEIHLAVRFTC 495
G + + C
Sbjct: 492 --------NHGRVKFSYHAKC 504
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 8e-10
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSS 99
L V V++A +L G +PY E+ MG+ TTR + NP+WN F +
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQD 448
Query: 100 VLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD 149
VL +T+ D+D F DDF+GR + +I P+ + E G+
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGE 499
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 7e-05
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 188 NIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPM 247
+++ + + L V+VIEA +L+ Y + +G+Q+ TR T+NP
Sbjct: 375 AYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTI-QDTLNPK 433
Query: 248 WNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLE 307
WN + F + +++ L LT+ DR + D+ LG+ IP+ + + K TR L
Sbjct: 434 WNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTR--RLL 491
Query: 308 KHIVVEGE 315
H V GE
Sbjct: 492 LHEVPTGE 499
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 57.3 bits (137), Expect = 1e-08
Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 13/118 (11%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT----NPEWNQVFAFSKDR 95
L + +++A++LPPK Y E+ + + + ++ W + F F+
Sbjct: 13 LKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67
Query: 96 IQSSVLEVTVKDKDFV----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD 149
++ +D D K ++G V + + R + G
Sbjct: 68 AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGG 125
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 48.1 bits (113), Expect = 9e-06
Identities = 32/198 (16%), Positives = 59/198 (29%), Gaps = 22/198 (11%)
Query: 363 VLELGILNAQGLMPMKTKDGRGTTDAYC-VAKYGQKWVRTRT---IIDSPTPKWNEQYTW 418
VL+L I+ A+ L P K YC + + RT + T W E + +
Sbjct: 12 VLKLWIIEARELPPKK--------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEF 63
Query: 419 EVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYP 478
+ + ++ + K + +G V + ++TL YP+ +
Sbjct: 64 NNLPAVRALRLHLYRDSD----KKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTG 119
Query: 479 NGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHY-----LHPLTVSQLDSLRHQATQ 533
+G G + + K Y L + +
Sbjct: 120 SG-GSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYVTNHYR 178
Query: 534 IVSMRLSRAEPPLRKEVV 551
++ L A KE V
Sbjct: 179 MLCAVLEPALNVKGKEEV 196
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 2e-05
Identities = 22/160 (13%), Positives = 41/160 (25%), Gaps = 11/160 (6%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL-GNQALRTRVS--ASRTINPMWNEDLMFVAAE 258
L++ +IEA++L P + Y + L RT ++ W E F
Sbjct: 13 LKLWIIEARELPPKKR-----YYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67
Query: 259 PFEE---HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGE 315
HL + + +K +G +P+ + R +
Sbjct: 68 AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMG 127
Query: 316 KKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQ 355
+ L S L +
Sbjct: 128 SGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYK 167
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 5e-08
Identities = 74/555 (13%), Positives = 150/555 (27%), Gaps = 162/555 (29%)
Query: 268 VEDRVAPN--------KDEVLGKCMIPLQYVDKRLDHKPVNTRWYN----LEKHIVVEGE 315
VE+ + N K E M+ Y+++R R YN K+ V +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-------DRLYNDNQVFAKYNVSRLQ 135
Query: 316 KKKDTKFA---SRIHMRICLEG----GYHVLDESTHYSSDLRPTAKQ----LWKSSIGVL 364
+ A R + ++G G + + K W ++
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV--CLSYKVQCKMDFKIFW-LNLKNC 192
Query: 365 ---ELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRT---RTIIDSPTPK------- 411
E + Q L+ + +D K ++ R + P
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 412 -WNEQYTWEVFDP-C-TVIT---IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR 465
N + W F+ C ++T V D +S
Sbjct: 253 VQNAK-AWNAFNLSCKILLTTRFKQVTD---------------FLSAATTTHISLDHHSM 296
Query: 466 VYTH--SYPLLVLY--------PNGVKKMGEIH-LAVRFTCSSLLNMMHM---YSQPLLP 511
T LL+ Y P V + + S+ + + +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLT---TNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 512 KMHYLHPLTVSQLDSLRHQA-----------TQIVSMRLSRAEPPLRKEVVEYMLDVGSH 560
K+ + +++ L+ ++ I ++ LS + K V +++ H
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-KLH 412
Query: 561 MWSM--RRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPITTVLIHILFI----ILVLYP 614
+S+ ++ K + I + + +N +H + I +
Sbjct: 413 KYSLVEKQPKESTISIPSIY---------LELKVKLENEYA---LHRSIVDHYNIPKTFD 460
Query: 615 --ELILPTVFLYLFLIGVWY--YRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRP 670
+LI P + Y + + + H + E F
Sbjct: 461 SDDLIPPYLDQYFY----SHIGH---------------HLKNIEHPERMTLF-------- 493
Query: 671 SDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWR---------DPRATAL---FV 718
RM + R + +I+ G L +L + DP+ L +
Sbjct: 494 ----RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 719 IFCLIAAIVLYVTPF 733
F L + +
Sbjct: 550 DFLPKIEENLICSKY 564
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 9e-08
Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 14/124 (11%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNP-EWNQVFAFSKDR--I 96
L V + +L G D +V +R E + ++++ F +
Sbjct: 23 LIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSID 77
Query: 97 QSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGEL 155
++ VLE+ + + + +G L ++ + L D ++ L
Sbjct: 78 RNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVE-----ENRVEVSDTLIDDNNAIIKTSL 132
Query: 156 MLAV 159
+ V
Sbjct: 133 SMEV 136
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 6e-05
Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 23/143 (16%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L V++ +L +GR + K Q+ +RV + ++E + A +
Sbjct: 23 LIVHLKTVSEL----RGR-ADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSID 77
Query: 262 --EHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKD 319
E L + + + ++++G + LQ V V + ++ D
Sbjct: 78 RNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV--------VEENRVEVSDTLI-------D 122
Query: 320 TKFASRIHMRICLEGGYHVLDES 342
+ I + +E Y D +
Sbjct: 123 DN-NAIIKTSLSMEVRYQAADGT 144
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 38 QYLYVRVVKAKDLPPKDVTGSC--DPYVEVKM------GNYKGTTRHFEKKTNPEWNQVF 89
+ L VR++ + LP + + DP V V++ + T NP W+ F
Sbjct: 497 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 556
Query: 90 AFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEI 126
F +++ V+D D K+DF+G+ N +
Sbjct: 557 EFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSL 594
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 9e-04
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 198 KLWYLRVNVIEAQDLQPTD--KGRFPEVYVKAQLG-----NQALRTRVSASRTINPMWNE 250
+ LRV +I Q L + K + V ++ + +T V + NP W+
Sbjct: 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDM 554
Query: 251 DLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQY 289
+ F P + VED + +K++ +G+ IP
Sbjct: 555 EFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNS 593
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A Length = 126 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 4e-04
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY----KGTTRHFEKKTN-PEWNQVFAFSK 93
+L + + + + P+ VKM +G T +K T PEW F
Sbjct: 7 FLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHI 66
Query: 94 DRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144
V+++ + ++ + V ++ + +R ++ A W L+
Sbjct: 67 YE--GRVIQIVLMRA---AEEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ 112
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 773 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.97 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.82 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.82 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.82 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.81 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.81 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.81 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.8 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.8 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.79 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.79 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.78 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.78 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.77 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.77 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.77 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.77 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.76 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.76 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.75 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.75 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.75 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.74 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.74 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.74 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.74 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.74 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.73 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.73 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.73 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.73 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.73 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.73 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.72 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.72 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.72 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.72 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.72 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.71 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.71 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.71 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.71 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.71 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.71 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.71 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.7 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.7 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.7 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.7 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.7 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.7 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.7 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.69 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.69 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.69 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.69 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.69 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.69 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.69 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.68 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.68 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.68 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.68 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.67 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.67 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.67 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.66 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.66 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.62 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.62 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.6 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.6 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.58 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.55 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.54 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.54 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.52 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.5 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.44 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.43 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.42 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.37 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.27 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.17 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.17 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.16 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.12 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.11 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.03 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.03 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.94 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.74 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.72 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.68 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.66 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 93.31 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 88.55 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 88.41 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 85.35 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 84.73 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 81.61 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 81.59 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=290.74 Aligned_cols=245 Identities=24% Similarity=0.391 Sum_probs=203.2
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEec--CCC
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKD--RIQ 97 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~--~~~ 97 (773)
|...+++.|+ ...+.|.|+|++|+||+..|..+.+||||++++++ ++++|++++++.||.|||+|.|.+. +..
T Consensus 6 G~l~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~ 83 (284)
T 2r83_A 6 GKLQYSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELA 83 (284)
T ss_dssp CEEEEEEEEE--TTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCT
T ss_pred eEEEEEEEEE--CCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhC
Confidence 4456777776 45689999999999999999889999999999964 4788999999999999999999985 345
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC--CceeeEEEEEEEEeccCCCCCCcccc
Q 004109 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAVWMGTQADEAFPEAWH 174 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~~~~~~~d~~~~~~~~ 174 (773)
...|.|+|||.+.. +|++||++.++|.++..+. ....|++|....+ ....|+|.+++.+.+
T Consensus 84 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p----------- 147 (284)
T 2r83_A 84 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSAEKEEQEKLGDICFSLRYVP----------- 147 (284)
T ss_dssp TCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSS-----CEEEEEECBCCSSCCCCCCCEEEEEEEEET-----------
T ss_pred cCEEEEEEEECCCCCCCceeEEEEEcchhcccCC-----cceeEEEeeccccccccccccEEEEEEecC-----------
Confidence 68999999999988 8999999999999997642 3578999988653 235699998887653
Q ss_pred cccccccccccccccccceeccCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeecccCCCCCcccc
Q 004109 175 SDAATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLG--N---QALRTRVSASRTINPMWN 249 (773)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~kT~~~~~~t~nP~wn 249 (773)
..+.|.|+|++|++|+.++.++.+||||++.+. + ++++|+++++ +.||.||
T Consensus 148 -----------------------~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wn 203 (284)
T 2r83_A 148 -----------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYN 203 (284)
T ss_dssp -----------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEE
T ss_pred -----------------------cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecC-CCCCEEc
Confidence 224699999999999999999999999999994 2 4678999876 9999999
Q ss_pred ceEEEEeeCCC--CCeEEEEEEEccCCCCCceeEEEEEeccccccc--------cCCCCCCceEEEcccC
Q 004109 250 EDLMFVAAEPF--EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKR--------LDHKPVNTRWYNLEKH 309 (773)
Q Consensus 250 e~f~f~~~~~~--~~~l~i~V~d~~~~~~d~~iG~~~i~L~~l~~~--------~~~~~~~~~w~~L~~~ 309 (773)
|.|.|.+.... ...|.|+|||++..+++++||++.+++..+... ...+....+|+.|.+.
T Consensus 204 e~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 204 ESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp EEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred eeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 99999986543 447999999999999999999999999864321 1233456789999875
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=283.52 Aligned_cols=229 Identities=25% Similarity=0.352 Sum_probs=190.4
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEEeecccCCCCCccccceEEEEeeCC--CCCeEEEEEEEccCC
Q 004109 200 WYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN---QALRTRVSASRTINPMWNEDLMFVAAEP--FEEHLILTVEDRVAP 274 (773)
Q Consensus 200 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~~~~ 274 (773)
+.|+|+|++|++|+.++.++.+||||++.++. +.++|+++++ +.||.|||+|.|.+... ....|.|+|||++..
T Consensus 19 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~ 97 (284)
T 2r83_A 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF 97 (284)
T ss_dssp TEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCS-CSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSS
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccC-CCCCeeCceEEEEechHHhCcCEEEEEEEECCCC
Confidence 47999999999999999999999999999963 5789999887 99999999999998643 356899999999998
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccCcccCCCCCccCCCCCcccc
Q 004109 275 NKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAK 354 (773)
Q Consensus 275 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~ 354 (773)
+++++||++.++|.++.. ......|++|...... .....|.+.+.+.+
T Consensus 98 ~~~~~lG~~~i~l~~l~~----~~~~~~w~~L~~~~~~------~~~~~G~i~l~l~~---------------------- 145 (284)
T 2r83_A 98 SKHDIIGEFKVPMNTVDF----GHVTEEWRDLQSAEKE------EQEKLGDICFSLRY---------------------- 145 (284)
T ss_dssp SCCCEEEEEEEEGGGCCC----SSCEEEEEECBCCSSC------CCCCCCEEEEEEEE----------------------
T ss_pred CCCceeEEEEEcchhccc----CCcceeEEEeeccccc------cccccccEEEEEEe----------------------
Confidence 899999999999999864 2346789999875211 12346888777653
Q ss_pred ccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C---eeeeeeeccCCCCCccccEEEEEEeCC---Cce
Q 004109 355 QLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTV 426 (773)
Q Consensus 355 ~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~ 426 (773)
.+..+.|.|.|++|+||+.+ +..|.+||||++.+. + ...+|+++++++||.|||.|.|.+... ...
T Consensus 146 ---~p~~~~l~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 219 (284)
T 2r83_A 146 ---VPTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQ 219 (284)
T ss_dssp ---ETTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEE
T ss_pred ---cCcCCceEEEEEEeECCCCc---CCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceE
Confidence 23347999999999999987 455889999999983 3 357999999999999999999998754 357
Q ss_pred EEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCcc------------ccCCeEEeeEEeEe
Q 004109 427 ITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL------------ETDRVYTHSYPLLV 475 (773)
Q Consensus 427 l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~~~~L~~ 475 (773)
|.|+|||+|.++ +|++||++.|++..+ ..++...+||+|..
T Consensus 220 l~i~V~d~d~~~--------~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 220 VVVTVLDYDKIG--------KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp EEEEEEECCSSS--------CCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred EEEEEEeCCCCC--------CCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence 999999999876 899999999999874 24567889999965
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=286.54 Aligned_cols=247 Identities=29% Similarity=0.426 Sum_probs=199.6
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeeeeccCCCCCCeeecEEEEEec--CC
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVFAFSKD--RI 96 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~---~~~~~~T~~~~~~~nP~WnE~f~f~v~--~~ 96 (773)
.|...+++.|+ ...+.|.|+|++|++|+..|..|.+||||++++ +.++++|++++++.||+|||+|.|.+. ++
T Consensus 6 ~G~l~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 83 (296)
T 1dqv_A 6 CGRISFALRYL--YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 83 (296)
T ss_dssp SCEEEEEEECC--SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred eeEEEEEEEEe--CCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHh
Confidence 34456666666 556899999999999999998999999999999 447889999999999999999999984 33
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEE-cCccCCCCCCCCCCcCeEEEeeeCCC-CceeeEEEEEEEEeccCCCCCCccc
Q 004109 97 QSSVLEVTVKDKDFV-KDDFMGRVLFD-LNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAVWMGTQADEAFPEAW 173 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~~~~~d~~~~~~~ 173 (773)
....|.|+|||.|.+ +|++||++.++ +.++.... .....|++|....+ ....|+|.+++.+.+
T Consensus 84 ~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~----~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~---------- 149 (296)
T 1dqv_A 84 AQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQP----PDRPLWRDILEGGSEKADLGELNFSLCYLP---------- 149 (296)
T ss_dssp SSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSC----SSCCCCEECBCCSSCCSCCCEEEEEEEEET----------
T ss_pred cCCEEEEEEEEcCCCCCCceEEEEEeccccccccCC----ccceeeeccccccccccccceEEEEEEecc----------
Confidence 456899999999998 89999999995 55554321 23467999987543 235699999887753
Q ss_pred ccccccccccccccccccceeccCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeecccCCCCCccc
Q 004109 174 HSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLG--N---QALRTRVSASRTINPMW 248 (773)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~kT~~~~~~t~nP~w 248 (773)
..+.|+|+|++|++|..++..|.+||||++++. + ++++|+++++ +.||.|
T Consensus 150 ------------------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~w 204 (296)
T 1dqv_A 150 ------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTY 204 (296)
T ss_dssp ------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEE
T ss_pred ------------------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecC-CCCCeE
Confidence 124799999999999999999999999999996 2 5789999876 999999
Q ss_pred cceEEEEeeCCC--CCeEEEEEEEccCCCCCceeEEEEEecccccc-cc--------CCCCCCceEEEcccC
Q 004109 249 NEDLMFVAAEPF--EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDK-RL--------DHKPVNTRWYNLEKH 309 (773)
Q Consensus 249 ne~f~f~~~~~~--~~~l~i~V~d~~~~~~d~~iG~~~i~L~~l~~-~~--------~~~~~~~~w~~L~~~ 309 (773)
||.|.|.+.... ...|.|+|||++..+++++||++.+++.++.. .. ..+....+|+.|...
T Consensus 205 ne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~ 276 (296)
T 1dqv_A 205 NEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE 276 (296)
T ss_dssp EECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred CceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence 999999886543 44799999999999999999999999997643 00 123456678888765
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-32 Score=283.33 Aligned_cols=229 Identities=23% Similarity=0.357 Sum_probs=187.3
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEEeecccCCCCCccccceEEEEeeCC--CCCeEEEEEEEccCC
Q 004109 200 WYLRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMWNEDLMFVAAEP--FEEHLILTVEDRVAP 274 (773)
Q Consensus 200 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l---~~~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~~~~ 274 (773)
+.|+|+|++|++|+.++.+|.+||||++.+ ++++++|+++++ +.||.|||+|.|.+... ....|.|+|||++..
T Consensus 20 ~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~ 98 (296)
T 1dqv_A 20 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF 98 (296)
T ss_dssp CEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred CEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCC-CCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCC
Confidence 479999999999999999999999999999 567899999877 99999999999998543 245899999999999
Q ss_pred CCCceeEEEEEe-ccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccCcccCCCCCccCCCCCccc
Q 004109 275 NKDEVLGKCMIP-LQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTA 353 (773)
Q Consensus 275 ~~d~~iG~~~i~-L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~ 353 (773)
+++++||++.++ +.++.. .......|+.|..... .....|.+.+.++.
T Consensus 99 ~~~~~iG~~~i~~l~~~~~---~~~~~~~w~~L~~~~~-------~~~~~G~i~vsl~y--------------------- 147 (296)
T 1dqv_A 99 SRHDLIGQVVLDNLLELAE---QPPDRPLWRDILEGGS-------EKADLGELNFSLCY--------------------- 147 (296)
T ss_dssp SCCCEEEEEECCCTTGGGS---SCSSCCCCEECBCCSS-------CCSCCCEEEEEEEE---------------------
T ss_pred CCCceEEEEEecccccccc---CCccceeeeccccccc-------cccccceEEEEEEe---------------------
Confidence 999999999996 444432 1233567999976521 12346888887763
Q ss_pred cccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C---eeeeeeeccCCCCCccccEEEEEEeCC---Cc
Q 004109 354 KQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CT 425 (773)
Q Consensus 354 ~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~ 425 (773)
.+..|.|.|.|++|+||+.+ +..|.+||||++.++ + .+.||+++++++||.|||.|.|.+... ..
T Consensus 148 ----~~~~~~l~v~v~~a~~L~~~---d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~ 220 (296)
T 1dqv_A 148 ----LPTAGLLTVTIIKASNLKAM---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENV 220 (296)
T ss_dssp ----ETTTTEEEEEEEEEESCCCC---SSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSC
T ss_pred ----ccccceeEEEEEEeecCCcc---CCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCc
Confidence 23348999999999999987 455889999999995 3 457999999999999999999998754 45
Q ss_pred eEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccc-------------cCCeEEeeEEeEe
Q 004109 426 VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE-------------TDRVYTHSYPLLV 475 (773)
Q Consensus 426 ~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~-------------~~~~~~~~~~L~~ 475 (773)
.|.|+|||+|.++ +|++||.+.|++..+. .++...+|++|..
T Consensus 221 ~L~i~V~d~d~~~--------~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~ 275 (296)
T 1dqv_A 221 GLSIAVVDYDCIG--------HNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 275 (296)
T ss_dssp CCCCEEEECCSSS--------CCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBB
T ss_pred EEEEEEEeCCCCC--------CCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccC
Confidence 8999999999876 8999999999998763 3556677888854
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-20 Score=171.24 Aligned_cols=124 Identities=25% Similarity=0.448 Sum_probs=109.6
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCC
Q 004109 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHL 437 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~ 437 (773)
....|.|.|.|++|+||+.+ +..|.+||||++.++++.+||+++++++||.|||.|.|.+.++...|.|+|||+|.+
T Consensus 9 ~~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 9 VKDVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD 85 (133)
T ss_dssp CCCSEEEEEEEEEEESCCCS---SSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred cCCceEEEEEEEeeECCCCC---CCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCC
Confidence 46679999999999999987 455889999999999999999999999999999999999998889999999999987
Q ss_pred CCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEee
Q 004109 438 HGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
+ +|++||++.|++.++..+. .+||+|.....++ +..|+|+|+++|.+
T Consensus 86 ~--------~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 86 K--------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLIY 132 (133)
T ss_dssp E--------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEEE
T ss_pred C--------CCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEEe
Confidence 5 7899999999999998776 5899998654433 45699999999854
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=166.69 Aligned_cols=126 Identities=21% Similarity=0.300 Sum_probs=108.0
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeC----CCceEEEEEEeCC
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVFDNC 435 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~d~~ 435 (773)
..|.|.|.|++|+||+.+ +. |.+||||+++++++.+||+++++++||+|||.|.|.+.. ....|+|+|||+|
T Consensus 5 ~~g~L~v~v~~a~~L~~~---~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d 80 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKT---KF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFE 80 (140)
T ss_dssp BCCEEEEEEEEEESCCCC---SS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETT
T ss_pred CCcEEEEEEEEeeCCCCC---CC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECC
Confidence 448999999999999987 45 789999999999999999999999999999999999975 3689999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEee-cCCCcccccEEEEEEEEeecc
Q 004109 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL-YPNGVKKMGEIHLAVRFTCSS 497 (773)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~-~~~g~~~~G~v~l~~~~~~~~ 497 (773)
.++ +|++||++.|++.++..+.....||++... ...+....|+|+|+++|.|..
T Consensus 81 ~~~--------~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~ 135 (140)
T 2dmh_A 81 TIG--------QNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPPS 135 (140)
T ss_dssp CSS--------SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCCB
T ss_pred CCC--------CCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECCC
Confidence 876 789999999999999988888899983322 223434569999999997643
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-19 Score=165.67 Aligned_cols=124 Identities=25% Similarity=0.401 Sum_probs=109.0
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCC---CCceEEEEEEeCCCC
Q 004109 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI---QSSVLEVTVKDKDFV 111 (773)
Q Consensus 35 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~---~~~~l~i~V~d~~~~ 111 (773)
...|.|.|+|++|+||+..+. +.+||||++++++++++|++++++.||+|||+|.|.+... ....|.|+|||++..
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~ 82 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETI 82 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCS
T ss_pred CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCC
Confidence 345799999999999999998 9999999999999999999999999999999999998643 468899999999998
Q ss_pred -CCeeeEEEEEEcCccCCCCCCCCCCcCeEEE---eeeCCCCceeeEEEEEEEEecc
Q 004109 112 -KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYR---LEDRKGDKVRGELMLAVWMGTQ 164 (773)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~---L~~~~~~~~~G~i~l~~~~~~~ 164 (773)
+|++||++.++|.++..+. ....|++ |.+..+....|+|++++.|.+.
T Consensus 83 ~~~~~lG~~~i~l~~l~~~~-----~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 83 GQNKLIGTATVALKDLTGDQ-----SRSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp SSCCCCEEEEEEGGGTCSSS-----CEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred CCCceEEEEEEEHHHhccCC-----CceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence 8999999999999997543 3468988 7777666678999999999864
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-20 Score=167.71 Aligned_cols=125 Identities=35% Similarity=0.540 Sum_probs=110.8
Q ss_pred eecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCC
Q 004109 30 TYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKD 109 (773)
Q Consensus 30 ~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~ 109 (773)
+..+.+..+.|.|+|++|++|+..+..|.+||||++++++++++|++++++.||.|||+|.|.+.+. ...|.|+|||.+
T Consensus 5 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d 83 (133)
T 2ep6_A 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDED 83 (133)
T ss_dssp CCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEE
T ss_pred cccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECC
Confidence 4556788999999999999999999889999999999999999999999999999999999999864 578999999999
Q ss_pred CC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC-ceeeEEEEEEEEe
Q 004109 110 FV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWMG 162 (773)
Q Consensus 110 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~ 162 (773)
.. +|++||++.++|.++..+ ..+||+|....+. ...|+|++++.+.
T Consensus 84 ~~~~~~~lG~~~i~l~~l~~~-------~~~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 84 GDKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp TTEEEEECCBCEEEGGGCCSS-------CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CCCCCCeeEEEEEEHHHccCC-------CceEEEeecCCCCCccceEEEEEEEEE
Confidence 98 899999999999999643 2489999987633 4679999998764
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=166.70 Aligned_cols=124 Identities=23% Similarity=0.360 Sum_probs=109.0
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeecc-CCCCCccccEEEEEEeCCCceEEEEEEeCCCC
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTII-DSPTPKWNEQYTWEVFDPCTVITIGVFDNCHL 437 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~-~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~ 437 (773)
.+.|.|.|+|++|+||+.. +..|.+||||+++++++.+||++++ +++||.|||.|.|.+.+....|+|+|||++.+
T Consensus 7 ~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~ 83 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG 83 (136)
T ss_dssp CCEEEEEEEEEEEEECSSC---CSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred CCcEEEEEEEEeccCCCCc---ccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCC
Confidence 4569999999999999987 4458899999999999999999998 89999999999999998888999999999987
Q ss_pred CCCCCCCCCCCCccEEEEEecCcc-ccCCeEEeeEEeEeecCCCcccccEEEEEEEEeecc
Q 004109 438 HGGDKAGGARDSRIGKVRIRLSTL-ETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSS 497 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~~ 497 (773)
+ +|++||++.|+|.++ ..+.....||+|.. . .+..|+|+|+++|.|..
T Consensus 84 ~--------~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~---~-~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 84 T--------EDDAVGEATIPLEPVFVEGSIPPTAYNVVK---D-EEYKGEIWVALSFKPSG 132 (136)
T ss_dssp T--------TTCCSEEEEEESHHHHHHSEEEEEEEEEEE---T-TEEEEEEEEEEEEEECC
T ss_pred C--------CCceEEEEEEEHHHhccCCCCCcEEEEeec---C-CccCEEEEEEEEEEeCC
Confidence 6 799999999999999 55666788999972 2 24569999999997753
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=168.61 Aligned_cols=119 Identities=22% Similarity=0.289 Sum_probs=101.9
Q ss_pred CccceEEEEEEEccCCCCCccCC-------CCCCCCcEEEEEECCee-eeeeeccCCCCCccccEEEEEEeCCCceEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKD-------GRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~-------~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~ 430 (773)
...|.|+|+|++|+||+++|... ..|.+||||++.++++. .||+++++|+||.|||+|.|.+.+ ...|.|+
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~ 104 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELA 104 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEE
Confidence 45699999999999999875210 13679999999999876 699999999999999999999876 4689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccC----CeEEeeEEeEeecCCCcccccEEEEEEEEe
Q 004109 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD----RVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~ 494 (773)
|||+|.++ +|++||++.|++.++..+ .....||+|. ..|+|+|+++|.
T Consensus 105 V~D~d~~~--------~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~--------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 105 VFHETPLG--------YDHFVANCTLQFQELLRTTGASDTFEGWVDLE--------PEGKVFVVITLT 156 (157)
T ss_dssp EEECCSSS--------SCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB--------SSCEEEEEEEEC
T ss_pred EEECCCCC--------CCCEEEEEEEEHHHhhcccCCCCcccEEEECC--------CCcEEEEEEEEE
Confidence 99999876 799999999999999754 7789999993 259999999873
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=166.36 Aligned_cols=124 Identities=27% Similarity=0.417 Sum_probs=109.0
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccC-CCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-C
Q 004109 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K 112 (773)
Q Consensus 35 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~-~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~ 112 (773)
.+.+.|.|+|++|++|+..+..+.+||||++++++++++|++++ ++.||.|||+|.|.+.+ ....|.|+|||++.+ +
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~~~ 85 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVGTE 85 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSCTT
T ss_pred CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCCCC
Confidence 56789999999999999999889999999999999999999998 89999999999999986 568899999999988 8
Q ss_pred CeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEeccC
Q 004109 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQA 165 (773)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~ 165 (773)
|++||++.++|.++.... .....||+|. .+.+..|+|++++.|.+..
T Consensus 86 d~~lG~~~i~l~~l~~~~----~~~~~w~~L~--~~~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 86 DDAVGEATIPLEPVFVEG----SIPPTAYNVV--KDEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp TCCSEEEEEESHHHHHHS----EEEEEEEEEE--ETTEEEEEEEEEEEEEECC
T ss_pred CceEEEEEEEHHHhccCC----CCCcEEEEee--cCCccCEEEEEEEEEEeCC
Confidence 999999999999995331 2356899998 3446789999999998643
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.9e-19 Score=164.14 Aligned_cols=128 Identities=23% Similarity=0.355 Sum_probs=104.8
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC-
Q 004109 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG- 439 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~- 439 (773)
.|.|.|.|++|+||+.+ +..|.+||||++.++++.++|+++++++||.|||.|.|.+..+...|.|+|||+|....
T Consensus 16 ~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~ 92 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAK---DKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKS 92 (148)
T ss_dssp CEEEEEEEEEEESCCCC---STTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHH
T ss_pred ccEEEEEEEeeeCCCCC---CCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccc
Confidence 48999999999999987 44588999999999999999999999999999999999999888999999999987400
Q ss_pred --CCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEe
Q 004109 440 --GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (773)
Q Consensus 440 --~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~ 494 (773)
.++...++|++||++.|++.++. ....+||+|......+ ...|+|+|++.|.
T Consensus 93 ~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~-~~~G~i~l~l~~e 146 (148)
T 3kwu_A 93 RVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKS-AVSGAIRLHISVE 146 (148)
T ss_dssp HHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTC-CCCCEEEEEEEEE
T ss_pred cccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCCC-CCceEEEEEEEEE
Confidence 00000027999999999999993 4568999997543322 3469999999884
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=164.01 Aligned_cols=129 Identities=29% Similarity=0.448 Sum_probs=103.1
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEe
Q 004109 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKD 107 (773)
Q Consensus 34 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~------~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d 107 (773)
.+..+.|.|+|++|++|+..+..+.+||||++++.+ .+++|++++++.||+|||+|.|.+... ...|.|+|||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d 94 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFD 94 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEE
Confidence 466789999999999999999889999999999974 578999999999999999999999763 5789999999
Q ss_pred CCCC-CCeeeEEEEEEcCccCCCCCCC-CCCcCeEEEeeeCC-CCceeeEEEEEEEEec
Q 004109 108 KDFV-KDDFMGRVLFDLNEIPKRVPPD-SPLAPQWYRLEDRK-GDKVRGELMLAVWMGT 163 (773)
Q Consensus 108 ~~~~-~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~-~~~~~G~i~l~~~~~~ 163 (773)
++.. +|++||++.++|.++..+.... .....+||+|.... .....|+|++++.|.+
T Consensus 95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred CCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 9998 8999999999999998664321 23446999998764 2356799999998853
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-19 Score=166.24 Aligned_cols=126 Identities=25% Similarity=0.372 Sum_probs=101.7
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC------eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEE
Q 004109 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGV 431 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v 431 (773)
.+..+.|.|.|++|+||+.+ +..|.+||||++.+++ ..+||+++++++||.|||.|.|.+......|+|+|
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V 92 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKK---DILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEV 92 (153)
T ss_dssp CTTCEEEEEEEEEEESCC----------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCC---CCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEE
Confidence 35568999999999999987 4457899999999964 56899999999999999999999998888999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCe------EEeeEEeEeecCCCcccccEEEEEEEEee
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRV------YTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
||+|.++ +|++||++.|++.++..+.. ...||+|.....++ +..|+|+|+++|.|
T Consensus 93 ~d~d~~~--------~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 93 FDENRLT--------RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLP 153 (153)
T ss_dssp EECCSSS--------CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEEEEEECC
T ss_pred EECCCCc--------CCCeeEEEEEEHHHcccCCCcccccccccccccccccCCC-CcceEEEEEEEEeC
Confidence 9999876 79999999999999976543 25899997654332 44699999999853
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=165.99 Aligned_cols=129 Identities=27% Similarity=0.452 Sum_probs=102.8
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeC
Q 004109 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDK 108 (773)
Q Consensus 35 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~------~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~ 108 (773)
...|.|+|+|++|++|+..+..+.+||||++++++ .+++|++++++.||.|||+|.|.+... ...|.|+|||.
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d~ 83 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFDE 83 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEEC
T ss_pred CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEEC
Confidence 55789999999999999999889999999999986 578999999999999999999999753 57899999999
Q ss_pred CCC-CCeeeEEEEEEcCccCCCCCC-CCCCcCeEEEeeeCCC-CceeeEEEEEEEEecc
Q 004109 109 DFV-KDDFMGRVLFDLNEIPKRVPP-DSPLAPQWYRLEDRKG-DKVRGELMLAVWMGTQ 164 (773)
Q Consensus 109 ~~~-~d~~lG~~~i~l~~l~~~~~~-~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~~~~ 164 (773)
+.+ +|++||++.++|.++..+... +.....+||+|....+ .+..|+|++++.|.+.
T Consensus 84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 998 899999999999999865432 1223448999998653 3467999999999875
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=160.44 Aligned_cols=119 Identities=32% Similarity=0.552 Sum_probs=104.6
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC----
Q 004109 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV---- 111 (773)
Q Consensus 36 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~---- 111 (773)
..+.|.|+|++|++|+..|..|.+||||++.+++++++|++++++.||.|||+|.|.+... ...|.|+|||.+..
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~~~~ 93 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSR 93 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSHHHH
T ss_pred cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 3589999999999999999899999999999999999999999999999999999999764 47899999999973
Q ss_pred --------CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC-ceeeEEEEEEEEe
Q 004109 112 --------KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWMG 162 (773)
Q Consensus 112 --------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~ 162 (773)
+|++||++.++|.++... ..+||+|....+. ...|+|++++.|.
T Consensus 94 ~~~~~~~~~~~~lG~~~i~l~~l~~~-------~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 94 VKQRFKRESDDFLGQTIIEVRTLSGE-------MDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHTTTSSCSSEEEEEEEEEGGGCCSE-------EEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred ccccccCCCCccEEEEEEEHHHCcCC-------CCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 899999999999999422 4689999976532 3579999998874
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=166.79 Aligned_cols=127 Identities=26% Similarity=0.386 Sum_probs=100.9
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC------eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEE
Q 004109 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGV 431 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v 431 (773)
....|.|.|.|++|+||+.+ +..|.+||||++.+++ ..++|+++++++||.|||.|.|.+......|.|+|
T Consensus 4 ~~~~g~L~V~v~~a~~L~~~---d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V 80 (176)
T 3m7f_B 4 NDDTRVVRVKVIAGIGLAKK---DILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEV 80 (176)
T ss_dssp CTTCEEEEEEEEEEESCC------CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEE
T ss_pred CCCcEEEEEEEEEeeCCCCc---CCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEE
Confidence 34569999999999999987 4558899999999975 56899999999999999999999997778999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeE-E-----eeEEeEeecCCCcccccEEEEEEEEeec
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVY-T-----HSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~-~-----~~~~L~~~~~~g~~~~G~v~l~~~~~~~ 496 (773)
||++.++ +|++||++.|+|.++..+... . .||+|.....++ +..|+|+|+++|.|.
T Consensus 81 ~d~d~~~--------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 81 FDENRLT--------RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLPK 142 (176)
T ss_dssp EECC------------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTC-CCCSEEEEEEEECC-
T ss_pred EECCCCC--------CCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCC-ccCEEEEEEEEEEeC
Confidence 9999876 799999999999999776433 2 799997654433 346999999999664
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=158.94 Aligned_cols=117 Identities=16% Similarity=0.214 Sum_probs=98.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC---eeeeeeeccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHL 437 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~ 437 (773)
|.|.|.|++|+||+.++..+..|.+||||++.+++ ..+||+++++++||.|||.|.|.+.. ....|+|+|||+|..
T Consensus 3 ~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~ 82 (126)
T 1rlw_A 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred cEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCC
Confidence 79999999999999753223457899999999985 67899999999999999999999965 477999999999875
Q ss_pred CCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 438 HGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+|++||++.|+|.++..+.....|++|.. ...|.|+++++.
T Consensus 83 ---------~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~~g~i~~~le~ 123 (126)
T 1rlw_A 83 ---------MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLEV 123 (126)
T ss_dssp ---------CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEEC
T ss_pred ---------CCceeEEEEEEHHHccCCCcEEEEEEcCC------CceEEEEEEEEe
Confidence 48899999999999999999999999943 223666666653
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=160.63 Aligned_cols=120 Identities=23% Similarity=0.328 Sum_probs=101.5
Q ss_pred CceEEEEEEEEEeecCCCCCC----------CCCCCcEEEEEECCEE-EEeecccCCCCCccccceEEEEeeCCCCCeEE
Q 004109 197 PKLWYLRVNVIEAQDLQPTDK----------GRFPEVYVKAQLGNQA-LRTRVSASRTINPMWNEDLMFVAAEPFEEHLI 265 (773)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~~~----------~~~~dpyv~v~l~~~~-~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~ 265 (773)
...|.|+|+|++|++|+++|. .+.+||||++.+++++ .+|+++++ |+||.|||+|.|.+.+ ...|.
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~k-tlnP~WNE~F~f~v~~--~~~L~ 102 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQK-TNKPTYNEEFCANVTD--GGHLE 102 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEE--ECEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCC-CCCCccCcEEEEEcCC--CCEEE
Confidence 456899999999999998873 3679999999999865 69999876 9999999999999875 35899
Q ss_pred EEEEEccCCCCCceeEEEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEc
Q 004109 266 LTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLE 333 (773)
Q Consensus 266 i~V~d~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~ 333 (773)
|+|||++..++|++||++.|+|.++....+.......||+|++ .|+|++++++.
T Consensus 103 ~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--------------~G~i~l~l~~~ 156 (157)
T 2fk9_A 103 LAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--------------EGKVFVVITLT 156 (157)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--------------SCEEEEEEEEC
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--------------CcEEEEEEEEE
Confidence 9999999999999999999999998754222345789999975 58999998864
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=159.69 Aligned_cols=119 Identities=19% Similarity=0.305 Sum_probs=100.5
Q ss_pred cceEEEEEEEccCCCCCccCCC--------CCCCCcEEEEEECCee-eeeeeccCCCCCccccEEEEEEeCCCceEEEEE
Q 004109 361 IGVLELGILNAQGLMPMKTKDG--------RGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGV 431 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~--------~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v 431 (773)
.|.|+|+|++|+||+++|.... .+.+||||++.+++.. .+|+++++++||.|||+|.|.+.++ ..|.|+|
T Consensus 5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V 83 (136)
T 1gmi_A 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAV 83 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEE
T ss_pred ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEEE
Confidence 4899999999999998753200 1349999999998866 6999999999999999999999876 8999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccC--CeEEeeEEeEeecCCCcccccEEEEEEEEeec
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD--RVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~ 496 (773)
||+|.++ +|++||++.|++.++..+ .....|++|. ..|+|+|+++|...
T Consensus 84 ~d~d~~~--------~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 84 FHDAPIG--------YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EECCSSS--------SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEE
T ss_pred EeCCCCC--------CCCEEEEEEEEHHHhcccCCCCccEEEEcC--------CCeEEEEEEEEEec
Confidence 9999876 799999999999999764 4568899883 25999999999654
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-18 Score=155.05 Aligned_cols=115 Identities=27% Similarity=0.443 Sum_probs=98.5
Q ss_pred eeEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCC
Q 004109 37 MQYLYVRVVKAKDLPPK---DVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDF 110 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~---d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~ 110 (773)
.+.|.|+|++|+||+.. +..|.+||||++++++ ++++|++++++.||+|||+|.|.+.......|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 47899999999999984 5568999999999986 68899999999999999999999965567899999999998
Q ss_pred CCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEE
Q 004109 111 VKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVW 160 (773)
Q Consensus 111 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~ 160 (773)
.+|++||++.++|.++..+. ....|++|... ..|+|++++.
T Consensus 82 ~~~~~iG~~~i~l~~l~~~~-----~~~~~~~L~~~----~~g~i~~~le 122 (126)
T 1rlw_A 82 VMDETLGTATFTVSSMKVGE-----KKEVPFIFNQV----TEMVLEMSLE 122 (126)
T ss_dssp SCCEEEEEEEEEGGGSCTTC-----EEEEEEEETTT----EEEEEEEEEE
T ss_pred CCCceeEEEEEEHHHccCCC-----cEEEEEEcCCC----ceEEEEEEEE
Confidence 88999999999999997542 35689999752 3577777663
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=157.93 Aligned_cols=116 Identities=20% Similarity=0.369 Sum_probs=98.8
Q ss_pred eeEEEEEEEEeecCCCCCCCC-----------CCCcEEEEEECCee-eeeeccCCCCCCeeecEEEEEecCCCCceEEEE
Q 004109 37 MQYLYVRVVKAKDLPPKDVTG-----------SCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVT 104 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~-----------~~dpyv~v~~~~~~-~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~ 104 (773)
.|.|+|+|++|+||++.|..+ .+||||++.++++. .+|+++.++.||+|||+|.|.+.+. ..|.|+
T Consensus 5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~~~ 82 (136)
T 1gmi_A 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIELA 82 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEEE
T ss_pred ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC--CEEEEE
Confidence 579999999999999887443 39999999998864 6899999999999999999999763 789999
Q ss_pred EEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004109 105 VKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 105 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
|||.+.. +|++||++.+++.++..+.. .....|++|.. .|+|++++.|.+
T Consensus 83 V~d~d~~~~dd~iG~~~i~l~~l~~~~~---~~~~~w~~L~~------~G~i~l~l~~~~ 133 (136)
T 1gmi_A 83 VFHDAPIGYDDFVANCTIQFEELLQNGS---RHFEDWIDLEP------EGKVYVIIDLSG 133 (136)
T ss_dssp EEECCSSSSCEEEEEEEEEHHHHTSTTC---SEEEEEEECBS------SCEEEEEEEEEE
T ss_pred EEeCCCCCCCCEEEEEEEEHHHhcccCC---CCccEEEEcCC------CeEEEEEEEEEe
Confidence 9999988 89999999999999986531 22478999864 589999998764
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-18 Score=154.44 Aligned_cols=115 Identities=20% Similarity=0.382 Sum_probs=97.0
Q ss_pred CcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeccCCCCCCeeecEEEEE-ec--C
Q 004109 24 GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAFS-KD--R 95 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~-----~~~~~~T~~~~~~~nP~WnE~f~f~-v~--~ 95 (773)
...+..+|+.. .+.|.|+|++|+||+. +..+.+||||++++ +..+++|++++++.||+|||+|.|. +. +
T Consensus 8 ~~~~~~~~~~~--~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~ 84 (134)
T 2b3r_A 8 SGAVKLSVSYR--NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKET 84 (134)
T ss_dssp CCEEEEEEEEE--TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHH
T ss_pred cEEEEEEEeec--CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHH
Confidence 34566677764 4799999999999997 66889999999999 3467899999999999999999999 74 3
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004109 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
+....|.|+|||.+.. ++++||++.++|.++..+. ...+||+|.+.
T Consensus 85 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L~~~ 131 (134)
T 2b3r_A 85 LRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSK-----ETVKWYQLTAA 131 (134)
T ss_dssp HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTS-----CEEEEEECBC-
T ss_pred hCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCC-----CcceeEECCCc
Confidence 3567999999999998 8999999999999997642 35799999875
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.5e-18 Score=161.70 Aligned_cols=127 Identities=20% Similarity=0.192 Sum_probs=104.0
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CC
Q 004109 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KD 113 (773)
Q Consensus 35 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d 113 (773)
...+.|.|+|++|++|+..+..+.+||||++++++++++|+++++++||+|||+|.|.+.. ...|.|+|||++.+ +|
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~~~d 110 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSD 110 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCC
T ss_pred CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCCCCC
Confidence 3457899999999999944434559999999999999999999999999999999999864 78899999999998 89
Q ss_pred eeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC-CceeeEEEEEEEEec
Q 004109 114 DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAVWMGT 163 (773)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~~~ 163 (773)
++||++.++|.++..+..........|++|....+ ....|+|.+++.+.+
T Consensus 111 d~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~ 161 (173)
T 2nq3_A 111 VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ 161 (173)
T ss_dssp EEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred ceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeee
Confidence 99999999999987543211112367999998742 346899999987764
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=162.42 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=98.3
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---e---eeeeeccCCCCCCeeecEEEEEecC-
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---Y---KGTTRHFEKKTNPEWNQVFAFSKDR- 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~---~~~T~~~~~~~nP~WnE~f~f~v~~- 95 (773)
|...+++.|+ ...+.|.|+|++|+||++.|..|.+||||++++.+ . ++||+++++++||+|||+|.|.+..
T Consensus 30 G~l~~sl~y~--~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~ 107 (155)
T 2z0u_A 30 TRIQIALKYD--EKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYP 107 (155)
T ss_dssp EEEEEEEEEE--TTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHH
T ss_pred EEEEEEEEEc--CCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHH
Confidence 4456666665 56689999999999999999999999999999965 2 7899999999999999999999853
Q ss_pred -CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004109 96 -IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 96 -~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
+....|.|+|||+|.. ++++||++.++|.++... .....+||+|.
T Consensus 108 ~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~----~~~~~~W~~L~ 154 (155)
T 2z0u_A 108 ALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRS----GERSTRWYNLL 154 (155)
T ss_dssp HHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTT----CCCEEEEEEEB
T ss_pred HhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCC----CCccccceEcc
Confidence 3357899999999998 999999999999999632 23467999986
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.8e-18 Score=153.37 Aligned_cols=113 Identities=29% Similarity=0.582 Sum_probs=93.3
Q ss_pred CcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeccCCCCCCeeecEEEEEe-c--C
Q 004109 24 GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAFSK-D--R 95 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~-----~~~~~~T~~~~~~~nP~WnE~f~f~v-~--~ 95 (773)
...+++.|+ +..+.|.|+|++|+||+..+..+.+||||++++ +..+++|++++++.||+|||+|.|.+ . +
T Consensus 6 ~l~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 83 (129)
T 2bwq_A 6 QLSIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE 83 (129)
T ss_dssp EEEEEEEEE--TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGG
T ss_pred EEEEEEEEc--cCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHH
Confidence 345666666 556899999999999999998899999999999 34688999999999999999999995 2 3
Q ss_pred CCCceEEEEEEeCCCC-C--CeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004109 96 IQSSVLEVTVKDKDFV-K--DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
+....|.|+|||.+.. + +++||++.++|.++..+. ..+||+|+
T Consensus 84 ~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~------~~~W~~Lq 129 (129)
T 2bwq_A 84 FRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQ 129 (129)
T ss_dssp GGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS------CEEEEECC
T ss_pred hcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc------CCccEECc
Confidence 3467999999999988 5 999999999999987542 57999984
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=156.53 Aligned_cols=118 Identities=28% Similarity=0.429 Sum_probs=100.2
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeecEEEEEecC--C
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSKDR--I 96 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~---~~~~~T~~~~~~~nP~WnE~f~f~v~~--~ 96 (773)
.|...+++.|+ ...+.|.|+|++|+||+..+..+.+||||++++. .++++|++++++.||+|||+|.|.+.. +
T Consensus 28 ~G~l~~~l~y~--~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 105 (152)
T 1rsy_A 28 LGKLQYSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 105 (152)
T ss_dssp CCEEEEEEEEE--TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHH
T ss_pred ceEEEEEEEEe--CCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHc
Confidence 34456666665 5668999999999999999988999999999994 367899999999999999999998853 3
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004109 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
....|.|+|||++.+ ++++||++.++|.++..+. ...+||+|.+.
T Consensus 106 ~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~ 151 (152)
T 1rsy_A 106 GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSA 151 (152)
T ss_dssp TTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSS-----CEEEEEECBCC
T ss_pred CCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCC-----CcceEEECCCC
Confidence 468899999999998 8999999999999997542 35799999864
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=154.75 Aligned_cols=118 Identities=29% Similarity=0.483 Sum_probs=100.3
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeecEEEEEec---CC
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSKD---RI 96 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~---~~~~~T~~~~~~~nP~WnE~f~f~v~---~~ 96 (773)
|...+++.|. .+.+.|.|+|++|++|+..+..+.+||||++++. .++++|++++++.||+|||+|.|.+. +.
T Consensus 13 G~l~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~ 90 (141)
T 2d8k_A 13 GRIQFSVGYN--FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKV 90 (141)
T ss_dssp CEEEEEEEEC--SSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHH
T ss_pred eEEEEEEEEe--CCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHc
Confidence 4445666665 6678999999999999999988999999999995 36789999999999999999999852 23
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
....|.|+|||++.+ ++++||++.++|.++..+. ....||+|....
T Consensus 91 ~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 137 (141)
T 2d8k_A 91 VQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ-----MQTFWKDLKPSG 137 (141)
T ss_dssp TTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTS-----CEEEEECCEECC
T ss_pred ccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCC-----CccEEEECcCCC
Confidence 467899999999998 8999999999999997653 367899999865
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=156.62 Aligned_cols=106 Identities=24% Similarity=0.322 Sum_probs=93.8
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---CCeeeeeeeccCCCCCccccEEEEEEeC---CCceEEEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVF 432 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~ 432 (773)
+..+.|.|+|++|+||+.+ +..+.+||||++.+ +.+.+||+++++++||.|||.|.|.+.. ....|.|+||
T Consensus 39 ~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~ 115 (152)
T 1rsy_A 39 FQNNQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVY 115 (152)
T ss_dssp TTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEE
T ss_pred CCCCEEEEEEEEeECCCCc---cCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEE
Confidence 3348999999999999987 44588999999999 4567899999999999999999998874 3679999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
|+|.++ +|++||++.|++.++..+....+||+|..
T Consensus 116 d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 116 DFDRFS--------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp ECCSSS--------CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred ECCCCC--------CCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 999876 79999999999999998888999999964
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-17 Score=152.01 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=93.1
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---CeeeeeeeccCCCCCccccEEEEEEeC----CCceEEEEEE
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVF 432 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~ 432 (773)
..+.|.|.|++|+||+.+ +..|.+||||++.+. ...+||+++++++||.|||.|.|.+.. ....|.|+||
T Consensus 24 ~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~ 100 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVL 100 (141)
T ss_dssp SSCCEEEEEEEEESCCCC---SSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCC---CCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEE
Confidence 348999999999999987 445889999999993 467899999999999999999998642 2578999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEee
Q 004109 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 476 (773)
|++.++ +|++||++.|++.++..+.....||+|...
T Consensus 101 d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 136 (141)
T 2d8k_A 101 DYDRFS--------RNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136 (141)
T ss_dssp ECCSSS--------SCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred ECCCCC--------CCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence 999876 799999999999999988888999999764
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=151.29 Aligned_cols=119 Identities=22% Similarity=0.342 Sum_probs=99.8
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-C-
Q 004109 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN--YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K- 112 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~--~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~- 112 (773)
...|+|+|++|++|+..|..|.+||||++++++ ++++|++++++.||+|||+|.|.+... +.|.|+|||++.. +
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~~~ 81 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIHKK 81 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTTSS
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCCCC
Confidence 457999999999999999999999999999975 789999999999999999999999764 3599999999987 4
Q ss_pred --CeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC---CceeeEEEEEEEE
Q 004109 113 --DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG---DKVRGELMLAVWM 161 (773)
Q Consensus 113 --d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~~~~ 161 (773)
|++||++.+++.++..... ...+|++|....+ ....|+|.+++..
T Consensus 82 ~~d~~lG~~~i~l~~l~~~~~----~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 82 QGAGFLGCVRLLSNAISRLKD----TGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp TTTTEEEEEEECHHHHHHHTT----SCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCceEEEEEeHHHhhcccc----cCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 8999999999998843321 2358999987642 2357999998754
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-18 Score=157.57 Aligned_cols=116 Identities=34% Similarity=0.611 Sum_probs=99.2
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe--------------eeeeeccCCCCCCeeecE
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY--------------KGTTRHFEKKTNPEWNQV 88 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~--------------~~~T~~~~~~~nP~WnE~ 88 (773)
|...+++.|+ .+.|.|+|++|+||+..+..|.+||||++++.+. +++|++++++.||+|||+
T Consensus 7 G~i~~~l~y~----~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~ 82 (142)
T 1rh8_A 7 GEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82 (142)
T ss_dssp CEEEEEEEEE----TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEE
T ss_pred eEEEEEEEEc----CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCE
Confidence 4456777777 5799999999999999998899999999999873 478999999999999999
Q ss_pred EEEE-ec--CCCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 89 FAFS-KD--RIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 89 f~f~-v~--~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
|.|. +. ++....|.|+|||++.. ++++||++.++|.++.... ...+||+|....
T Consensus 83 f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 140 (142)
T 1rh8_A 83 VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD-----NTPRWYPLKEQT 140 (142)
T ss_dssp EEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT-----TCCEEEECBCCC
T ss_pred EEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCC-----CCCeEEECCccC
Confidence 9997 53 33467899999999998 8999999999999987542 356999998764
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=155.02 Aligned_cols=116 Identities=28% Similarity=0.446 Sum_probs=98.8
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeeeeccCCCCCCeeecEEEEEec--CCC
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVFAFSKD--RIQ 97 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~---~~~~~~T~~~~~~~nP~WnE~f~f~v~--~~~ 97 (773)
|...+++.|. ...+.|.|+|++|++|+..+..+.+||||++++ +.++++|++++++.||+|||+|.|.+. ++.
T Consensus 21 G~l~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 98 (143)
T 3f04_A 21 GKLQYSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELG 98 (143)
T ss_dssp CEEEEEEEEE--TTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHT
T ss_pred EEEEEEEEEe--CCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcC
Confidence 4445555555 667899999999999999988889999999999 346889999999999999999999985 334
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeee
Q 004109 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (773)
...|.|+|||++.. +|++||++.++|.++..+. ...+||+|..
T Consensus 99 ~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~ 142 (143)
T 3f04_A 99 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQS 142 (143)
T ss_dssp TCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTS-----CEEEEEECBC
T ss_pred CCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCC-----CcceEEECcC
Confidence 57899999999998 9999999999999997643 3568999975
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=151.69 Aligned_cols=123 Identities=22% Similarity=0.266 Sum_probs=98.2
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC--eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ--KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG 439 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~ 439 (773)
..|+|+|++|+||+++ +..|.+||||++.+++ +.++|+++++++||.|||.|.|.+.++. .|.|+|||+|.++.
T Consensus 5 ~~L~V~v~~a~~L~~~---d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~ 80 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKK---DFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHK 80 (132)
T ss_dssp EEEEEEEEEEESCCCC---STTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTS
T ss_pred EEEEEEEEEeECCCCC---CCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCC
Confidence 6899999999999987 4558899999999975 7899999999999999999999998764 49999999998740
Q ss_pred CCCCCCCCCCccEEEEEecCcc-ccCCeEEeeEEeEeecCCC-cccccEEEEEEEE
Q 004109 440 GDKAGGARDSRIGKVRIRLSTL-ETDRVYTHSYPLLVLYPNG-VKKMGEIHLAVRF 493 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~g-~~~~G~v~l~~~~ 493 (773)
...|++||.+.|++..+ ........|++|......+ .+..|+|++++..
T Consensus 81 -----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 81 -----KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp -----STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred -----CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 01279999999999988 3333335789997643322 2347999988864
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-18 Score=156.72 Aligned_cols=118 Identities=28% Similarity=0.558 Sum_probs=100.1
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeccCCCCCCeeecEEEEEe-c--
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAFSK-D-- 94 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~-----~~~~~~T~~~~~~~nP~WnE~f~f~v-~-- 94 (773)
|...+++.|. +..+.|.|+|++|+||+..+..+.+||||++++ +.++++|++++++.||+|||+|.|.+ .
T Consensus 8 G~i~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~ 85 (141)
T 1v27_A 8 GQLSIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR 85 (141)
T ss_dssp CEEEEEEEEE--TTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTT
T ss_pred cEEEEEEEEe--CCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHH
Confidence 4456666666 556899999999999999998899999999999 34688999999999999999999994 2
Q ss_pred CCCCceEEEEEEeCCCC-C--CeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004109 95 RIQSSVLEVTVKDKDFV-K--DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 95 ~~~~~~l~i~V~d~~~~-~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
++....|.|+|||++.. + +++||++.++|.++..+. ..+||+|.....
T Consensus 86 ~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~------~~~W~~L~~~~~ 136 (141)
T 1v27_A 86 EFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQTHDS 136 (141)
T ss_dssp GGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS------EEEEEECBCCSS
T ss_pred HhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC------CCceEECccccc
Confidence 33458999999999988 5 999999999999987531 579999998764
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-18 Score=157.88 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=91.5
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC---e---eeeeeeccCCCCCccccEEEEEEeCC---CceEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---K---WVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITI 429 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~---~---~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 429 (773)
+..+.|.|.|++|+||+++ +..|.+||||++.+.+ . .+||+++++|+||+|||.|.|.+... ...|.|
T Consensus 40 ~~~~~L~V~Vi~a~~L~~~---d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~ 116 (155)
T 2z0u_A 40 EKNKQFAILIIQLSNLSAL---LQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRV 116 (155)
T ss_dssp TTTTEEEEEEEEEECGGGT---CCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEE
T ss_pred CCCCEEEEEEEEccCcCCc---ccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEE
Confidence 3448999999999999987 5568899999999965 2 68999999999999999999998742 568999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecCccc-cCCeEEeeEEeE
Q 004109 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE-TDRVYTHSYPLL 474 (773)
Q Consensus 430 ~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~ 474 (773)
+|||+|.++ ++++||++.|+|.++. .+....+||+|.
T Consensus 117 ~V~d~d~~~--------~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 117 DVCTTDRSH--------LEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEEEECTTS--------CEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred EEEECCCCC--------CCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 999999876 8999999999999995 467778999984
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.1e-18 Score=157.88 Aligned_cols=122 Identities=16% Similarity=0.259 Sum_probs=102.6
Q ss_pred ceeeEEEEEEEEccCcccCCCCCccCCCCCccccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----
Q 004109 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG----- 395 (773)
Q Consensus 321 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~----- 395 (773)
...|+|.+++.. .+..+.|.|.|++|+||+.++. ..+.+||||++.++
T Consensus 7 ~~~G~l~~sl~y-------------------------~~~~~~L~V~v~~a~~L~~~d~--~~~~~dpyv~v~l~~~~~~ 59 (148)
T 3fdw_A 7 FVTGRIAFSLKY-------------------------EQQTQSLVVHVKECHQLAYADE--AKKRSNPYVKTYLLPDKSR 59 (148)
T ss_dssp CCCCEEEEEEEE-------------------------ETTTTEEEEEEEEEESCCCSBT--TTTBCCEEEEEEEETCCSG
T ss_pred ccceEEEEEEEE-------------------------eCCCCEEEEEEEEecCCCCccc--CCCCCCeEEEEEEEcCCcc
Confidence 457899888874 2334899999999999998741 35789999999995
Q ss_pred CeeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEE
Q 004109 396 QKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472 (773)
Q Consensus 396 ~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 472 (773)
....+|+++++++||.|||.|.|.+... ...|.|+|||+|.++ +|++||++.|+|.++..+.....||+
T Consensus 60 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~ 131 (148)
T 3fdw_A 60 QGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFG--------RNTFLGEAEIQMDSWKLDKKLDHCLP 131 (148)
T ss_dssp GGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGG--------CEEEEEEEEEEHHHHHHHCCSEEEEE
T ss_pred cCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCc--------CCcEEEEEEEEcccccccCCccceEE
Confidence 2468999999999999999999998753 457999999999876 79999999999999987777889999
Q ss_pred eEeec
Q 004109 473 LLVLY 477 (773)
Q Consensus 473 L~~~~ 477 (773)
|....
T Consensus 132 L~~~~ 136 (148)
T 3fdw_A 132 LHGKI 136 (148)
T ss_dssp CBCC-
T ss_pred CcCcc
Confidence 97643
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.2e-17 Score=149.39 Aligned_cols=116 Identities=20% Similarity=0.338 Sum_probs=96.5
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeccCCCCCCeeecEEEEEecC--
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN----YKGTTRHFEKKTNPEWNQVFAFSKDR-- 95 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~----~~~~T~~~~~~~nP~WnE~f~f~v~~-- 95 (773)
.|...+++.|+ ...+.|.|+|++|++ .|..|.+||||++.+.+ .+++|++++++.||+|||+|.|.+..
T Consensus 12 ~G~l~~sl~y~--~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~ 86 (138)
T 1wfm_A 12 APKLHYCLDYD--CQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE 86 (138)
T ss_dssp CCEEEEEEEEE--TTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred ceEEEEEEEEe--CCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHH
Confidence 45566777776 556799999999994 56788999999999942 36899999999999999999999853
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
+....|.|+|||+|.+ +|++||++.++|.++..+. ...+|++|....
T Consensus 87 l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 134 (138)
T 1wfm_A 87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL-----GAAQWGELKTSG 134 (138)
T ss_dssp STTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCT-----TCCEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcc-----cccceeeCcCCC
Confidence 3467899999999998 9999999999999996432 367999998864
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=150.22 Aligned_cols=102 Identities=23% Similarity=0.374 Sum_probs=85.1
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCeeeeeeeccCCCCCccccEEEEEEeC----CCceEEEE
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIG 430 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~ 430 (773)
..+.|.|.|++|+||+.+ +..|.+||||++.+ +....+|+++++++||.|||.|.|.+.. ....|.|+
T Consensus 16 ~~~~L~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~ 92 (129)
T 2bwq_A 16 VGHQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 92 (129)
T ss_dssp TTTEEEEEEEEEESCCCC---TTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred CCCEEEEEEEEeeCCCCC---CCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEE
Confidence 348999999999999987 45588999999999 4567999999999999999999999643 25799999
Q ss_pred EEeCCCCCCCCCCCCCC--CCccEEEEEecCccccCCeEEeeEEe
Q 004109 431 VFDNCHLHGGDKAGGAR--DSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
|||+|.++ + |++||++.|++.++.... ..+||+|
T Consensus 93 V~d~d~~~--------~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 93 LWDQARVR--------EEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp EEEC---------------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred EEECCcCc--------CcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 99999875 4 899999999999987655 7899998
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=153.50 Aligned_cols=105 Identities=23% Similarity=0.321 Sum_probs=93.3
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---CCeeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVF 432 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~ 432 (773)
+..+.|.|.|++|+||+.++ ..+.+||||++.+ +.+..+|+++++++||.|||+|.|.+... ...|.|+||
T Consensus 31 ~~~~~L~v~v~~a~~L~~~d---~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~ 107 (143)
T 3f04_A 31 FQNNQLLVGIIQAAELPALD---MGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVY 107 (143)
T ss_dssp TTTTEEEEEEEEEECCCCBG---GGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEE
T ss_pred CCCCEEEEEEEEecCCCCCC---CCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEE
Confidence 34489999999999999874 4478999999999 55679999999999999999999998743 579999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004109 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
|+|.++ +|++||++.|+|.++..+....+||+|.
T Consensus 108 d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 108 DFDRFS--------KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp ECCSSS--------CCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred eCCCCC--------CCceEEEEEEEHHHccCCCCcceEEECc
Confidence 999876 7999999999999999998899999995
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=155.88 Aligned_cols=124 Identities=14% Similarity=0.164 Sum_probs=101.0
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~ 438 (773)
...+.|+|+|++|++|+..+ ..+.+||||++.++++.+||+++++++||+|||.|.|.+. +...|.|+|||+|.++
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~---~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~ 108 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKK---NWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLK 108 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC-----CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSS
T ss_pred CCceEEEEEEEEeECCCCcc---cCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCC
Confidence 34589999999999998432 2244999999999999999999999999999999999985 5889999999999876
Q ss_pred CCCCCCCCCCCccEEEEEecCccccC-----CeEEeeEEeEeecCCCcccccEEEEEEEEee
Q 004109 439 GGDKAGGARDSRIGKVRIRLSTLETD-----RVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 439 ~~~~~~~~~d~~lG~~~i~l~~l~~~-----~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
+|++||++.|++.++..+ .....|++|..... +.+..|+|.+.+.+.+
T Consensus 109 --------~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~-~~~~~G~L~v~l~~l~ 161 (173)
T 2nq3_A 109 --------SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE-PTETIGDLSICLDGLQ 161 (173)
T ss_dssp --------CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC-TTSEEEEEEEEEESEE
T ss_pred --------CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC-CCcccEEEEEEEeeee
Confidence 799999999999998532 12367999987532 3345699998887643
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=153.16 Aligned_cols=117 Identities=23% Similarity=0.418 Sum_probs=97.7
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEe--cC
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSK--DR 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v--~~ 95 (773)
|...+++.|. ...+.|.|+|++|+||+..+ .+.+||||++.+.+ .+++|++++++.||+|||+|.|.+ .+
T Consensus 14 G~~~lsL~y~--~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 90 (153)
T 3fbk_A 14 GAGQLRLSID--AQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEED 90 (153)
T ss_dssp CCCEEEEEEE--ESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGG
T ss_pred CEEEEEEEEE--CCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHH
Confidence 4456777776 55679999999999999998 68999999999943 578999999999999999999998 44
Q ss_pred CCCceEEEEEEeCCCC-C-CeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 96 IQSSVLEVTVKDKDFV-K-DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~-d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
.. ..|.|+|||.+.. + |++||++.++|.++... .....+||+|.+..
T Consensus 91 ~~-~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~----~~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 91 DQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTP----DKEISGWYYLLGEH 139 (153)
T ss_dssp TT-SEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC------CCEEEEEECBCTT
T ss_pred hC-CEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCC----CCccccEEECCChh
Confidence 43 4599999999997 5 99999999999999742 12357899999875
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=151.04 Aligned_cols=119 Identities=19% Similarity=0.350 Sum_probs=99.8
Q ss_pred ceeeEEEEEEEEccCcccCCCCCccCCCCCccccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----C
Q 004109 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----G 395 (773)
Q Consensus 321 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~ 395 (773)
...|+|.+++.+. +..+.|.|.|++|+||+.+ +..+.+||||++.+ +
T Consensus 5 ~~~G~i~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~ 56 (141)
T 1v27_A 5 SSGGQLSIKLWFD-------------------------KVGHQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSD 56 (141)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---SSSCCCCEEEECCCSSCCSS
T ss_pred CcccEEEEEEEEe-------------------------CCCCEEEEEEEEccCCCCc---CCCCCCCCEEEEEEecCCCC
Confidence 3478898888742 3348999999999999987 45588999999998 4
Q ss_pred CeeeeeeeccCCCCCccccEEEEEEeC----CCceEEEEEEeCCCCCCCCCCCCCC--CCccEEEEEecCccccCCeEEe
Q 004109 396 QKWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVFDNCHLHGGDKAGGAR--DSRIGKVRIRLSTLETDRVYTH 469 (773)
Q Consensus 396 ~~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~d~~~~~~~~~~~~~~--d~~lG~~~i~l~~l~~~~~~~~ 469 (773)
...+||+++++++||+|||.|.|.+.. ....|.|+|||++.++ + |++||++.|+|.++.... ..+
T Consensus 57 ~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~--------~~~~~~lG~~~i~l~~l~~~~-~~~ 127 (141)
T 1v27_A 57 KNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVR--------EEESEFLGEILIELETALLDD-EPH 127 (141)
T ss_dssp SSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSS--------SCCBCCCEEEEEEGGGCCCSS-EEE
T ss_pred CcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCc--------CCCCceEEEEEEEccccCCCC-CCc
Confidence 567899999999999999999999542 2579999999999875 4 899999999999987655 789
Q ss_pred eEEeEee
Q 004109 470 SYPLLVL 476 (773)
Q Consensus 470 ~~~L~~~ 476 (773)
||+|...
T Consensus 128 W~~L~~~ 134 (141)
T 1v27_A 128 WYKLQTH 134 (141)
T ss_dssp EEECBCC
T ss_pred eEECccc
Confidence 9999764
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=149.53 Aligned_cols=103 Identities=14% Similarity=0.239 Sum_probs=91.3
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCeeeeeeeccCCCCCccccEEEEE-EeC---CCceEEEEE
Q 004109 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWE-VFD---PCTVITIGV 431 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~-v~~---~~~~l~v~v 431 (773)
.+.|.|.|++|+||+. +..|.+||||++.+ +....||+++++++||.|||+|.|. +.. ....|.|+|
T Consensus 19 ~~~L~V~V~~a~~L~~----~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V 94 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVT----EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSV 94 (134)
T ss_dssp TTEEEEEEEEEECCCC----TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEE
T ss_pred CCEEEEEEEEeeCCCC----CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEE
Confidence 3899999999999985 34578999999998 4467899999999999999999999 653 357999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
||+|.++ +|++||++.|+|.++..+.....||+|..
T Consensus 95 ~d~d~~~--------~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 95 LSAESLR--------ENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp EECCSSS--------CCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred EECCCCC--------CCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 9999876 78999999999999998888899999965
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-17 Score=155.49 Aligned_cols=119 Identities=17% Similarity=0.239 Sum_probs=98.8
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCC
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRI 96 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~ 96 (773)
|...+++.|. +..+.|.|+|++|+||+..+ ..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+...
T Consensus 10 G~l~~sl~y~--~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 87 (148)
T 3fdw_A 10 GRIAFSLKYE--QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPES 87 (148)
T ss_dssp CEEEEEEEEE--TTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCST
T ss_pred eEEEEEEEEe--CCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChh
Confidence 3345555555 66789999999999999888 578999999999973 478999999999999999999998542
Q ss_pred --CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004109 97 --QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 97 --~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
....|.|+|||.+.. ++++||++.++|.++..+. ...+||+|..+.+
T Consensus 88 ~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~~ 137 (148)
T 3fdw_A 88 LLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDK-----KLDHCLPLHGKIS 137 (148)
T ss_dssp TGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHC-----CSEEEEECBCC--
T ss_pred HhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccC-----CccceEECcCccc
Confidence 356799999999998 8999999999999997653 2569999998753
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=151.82 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=99.2
Q ss_pred ceeeEEEEEEEEccCcccCCCCCccCCCCCccccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC----
Q 004109 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---- 396 (773)
Q Consensus 321 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~---- 396 (773)
...|+|++++... +..+.|.|.|++|+||+.+ +..| +||||++.+.+
T Consensus 8 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~---d~~g-~dpyv~v~l~~~~~~ 58 (142)
T 2dmg_A 8 SPLGQIQLTIRHS-------------------------SQRNKLIVVVHACRNLIAF---SEDG-SDPYVRMYLLPDKRR 58 (142)
T ss_dssp CSSCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCS---STTC-CCEEEEEEEESCCCS
T ss_pred CCcceEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCC---CCCC-CCeeEEEEEEcCCCC
Confidence 4578998888742 3348999999999999987 4457 99999999932
Q ss_pred -eeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEE
Q 004109 397 -KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472 (773)
Q Consensus 397 -~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 472 (773)
..++|+++++++||+|||.|.|.+... ...|.|+|||++.++ ...|++||++.|+|.++..+....+||+
T Consensus 59 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~------~~~~~~iG~~~i~l~~~~~~~~~~~W~~ 132 (142)
T 2dmg_A 59 SGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFL------SKDKGLLGKVLVALASEELAKGWTQWYD 132 (142)
T ss_dssp SSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSS------CCSCCCCEEEEEECCCSTTTTCBCCBCC
T ss_pred CCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCcc------ccCCcEEEEEEEecccccccccccceee
Confidence 568999999999999999999998642 459999999999764 0024799999999999988777889999
Q ss_pred eEee
Q 004109 473 LLVL 476 (773)
Q Consensus 473 L~~~ 476 (773)
|...
T Consensus 133 L~~~ 136 (142)
T 2dmg_A 133 LTED 136 (142)
T ss_dssp CBCS
T ss_pred ccCC
Confidence 9753
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=147.72 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=98.1
Q ss_pred ceeeEEEEEEEEccCcccCCCCCccCCCCCccccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---C-
Q 004109 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---Q- 396 (773)
Q Consensus 321 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~- 396 (773)
...|+|++++... ...+.|.|.|++|++ + +..|.+||||++.+. +
T Consensus 10 ~~~G~l~~sl~y~-------------------------~~~~~L~V~v~~a~~---~---d~~g~sDPyv~v~l~~~~~~ 58 (138)
T 1wfm_A 10 NQAPKLHYCLDYD-------------------------CQKAELFVTRLEAVT---S---NHDGGCDCYVQGSVANRTGS 58 (138)
T ss_dssp SSCCEEEEEEEEE-------------------------TTTTEEEEEEEEEEC---C---CCSSCCCEEEEEEEEETTEE
T ss_pred CcceEEEEEEEEe-------------------------CCCCEEEEEEEEEEc---C---CCCCCcceEEEEEEEcCCCc
Confidence 3468888888742 334899999999994 3 566889999999993 2
Q ss_pred eeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004109 397 KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 397 ~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
...+|+++++++||+|||.|.|.+... ...|.|+|||+|.++ +|++||++.|+|.++..+.....||+|
T Consensus 59 ~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~--------~dd~lG~~~i~l~~l~~~~~~~~W~~L 130 (138)
T 1wfm_A 59 VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS--------RHSVAGELRLGLDGTSVPLGAAQWGEL 130 (138)
T ss_dssp EEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSC--------TTSCSEEEEEESSSSSSCTTCCEEEEC
T ss_pred ccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCC--------CCcEEEEEEEEcccccCcccccceeeC
Confidence 358999999999999999999998753 568999999999876 899999999999999877777899999
Q ss_pred Eee
Q 004109 474 LVL 476 (773)
Q Consensus 474 ~~~ 476 (773)
...
T Consensus 131 ~~~ 133 (138)
T 1wfm_A 131 KTS 133 (138)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-17 Score=153.56 Aligned_cols=105 Identities=26% Similarity=0.389 Sum_probs=90.5
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCeeeeeeeccCCCCCccccEEEEEEe--CCCceEEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVF--DPCTVITIGV 431 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~--~~~~~l~v~v 431 (773)
+..+.|.|.|++|+||+.++ .|.+||||++.+ +....+|+++++++||.|||.|.|.+. +....|.|+|
T Consensus 24 ~~~~~L~V~v~~a~~L~~~d----~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V 99 (153)
T 3fbk_A 24 AQDRVLLLHIIEGKGLISKQ----PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTV 99 (153)
T ss_dssp ESSSEEEEEEEEEESCCCCS----SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEE
T ss_pred CCCCEEEEEEEEeeCCCCCC----CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEE
Confidence 34489999999999999873 378999999998 235689999999999999999999984 4556799999
Q ss_pred EeCCCCCCCCCCCCCC-CCccEEEEEecCcccc-CCeEEeeEEeEe
Q 004109 432 FDNCHLHGGDKAGGAR-DSRIGKVRIRLSTLET-DRVYTHSYPLLV 475 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~L~~ 475 (773)
||+|.++ + |++||++.|++.++.. +.....||+|..
T Consensus 100 ~d~d~~~--------~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~ 137 (153)
T 3fbk_A 100 WNRASQS--------RQSGLIGCMSFGVKSLLTPDKEISGWYYLLG 137 (153)
T ss_dssp EECCSSG--------GGCEEEEEEEEEHHHHTC--CCEEEEEECBC
T ss_pred EeCCCCC--------CCCcEEEEEEEEHHHhcCCCCccccEEECCC
Confidence 9999865 5 8999999999999985 788899999976
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=9e-17 Score=148.45 Aligned_cols=119 Identities=24% Similarity=0.315 Sum_probs=97.7
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEE-ec--C
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFS-KD--R 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~-v~--~ 95 (773)
|...+++.|+ ...+.|.|+|++|+||+..+.. +.+||||++++.+ ++++|++++++.||+|||+|.|. +. +
T Consensus 9 G~l~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~ 86 (138)
T 1ugk_A 9 GTLFFSLEYN--FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQ 86 (138)
T ss_dssp CEEEEEEEEE--GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTT
T ss_pred EEEEEEEEEE--CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHH
Confidence 3345555555 6678999999999999999974 8999999999964 68999999999999999999995 53 2
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
+....|.|+|||++.+ +|++||++.++|.++..... ....|++|....
T Consensus 87 ~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~----~~~~~~~l~~~~ 135 (138)
T 1ugk_A 87 IQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEG----KMLMNREIISGP 135 (138)
T ss_dssp GGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTC----CEEEEEECBSSS
T ss_pred hccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCC----cchhhhhhhcCC
Confidence 3457899999999988 89999999999999976531 234578887654
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-17 Score=156.32 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=92.1
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEE-eCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVF-DNC 435 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~-d~~ 435 (773)
+.|.|.|++|+||+.+|. ..|.+||||++.+++ ..+||+++++++||+|||+|.|.+......|.|+|| |+|
T Consensus 30 ~~L~V~v~~a~~L~~~d~--~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d 107 (171)
T 2q3x_A 30 GQLEVEVIRARSLTQKPG--SKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG 107 (171)
T ss_dssp TEEEEEEEEEESCCCCC-----CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred CEEEEEEEEeeCCCCCCc--CCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence 799999999999998732 257899999999853 378999999999999999999998766789999999 999
Q ss_pred CCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEee
Q 004109 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (773)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 476 (773)
.++ +|++||.+.|+|.++..+....+||+|...
T Consensus 108 ~~~--------~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 108 RMD--------HKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp TTC--------SSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCC--------CCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 876 789999999999999988889999999754
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=147.43 Aligned_cols=119 Identities=20% Similarity=0.253 Sum_probs=97.8
Q ss_pred ceeeEEEEEEEEccCcccCCCCCccCCCCCccccccccCccceEEEEEEEccCCCCCccCCC-CCCCCcEEEEEEC---C
Q 004109 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDG-RGTTDAYCVAKYG---Q 396 (773)
Q Consensus 321 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~-~~~~dpyv~v~~~---~ 396 (773)
...|+|.+++.. .+..+.|.|.|++|+||+.+ +. .+.+||||++.++ .
T Consensus 6 ~~~G~l~~~l~y-------------------------~~~~~~L~v~v~~a~~L~~~---d~~~~~~dpyv~v~~~~~~~ 57 (138)
T 1ugk_A 6 SGLGTLFFSLEY-------------------------NFERKAFVVNIKEARGLPAM---DEQSMTSDPYIKMTILPEKK 57 (138)
T ss_dssp CCCCEEEEEEEE-------------------------EGGGTEEEEEEEEEESCCCC---BTTTTBCEEEEEEEEETTTC
T ss_pred CccEEEEEEEEE-------------------------ECCCCEEEEEEEEeeCCCCC---CCCCCCCCCEEEEEEecCCC
Confidence 347888888864 23348999999999999987 44 3789999999995 3
Q ss_pred eeeeeeeccCCCCCccccEEEEE-EeC---CCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCC-eEEeeE
Q 004109 397 KWVRTRTIIDSPTPKWNEQYTWE-VFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR-VYTHSY 471 (773)
Q Consensus 397 ~~~~T~~~~~t~~P~wne~~~f~-v~~---~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~ 471 (773)
+.+||+++++++||.|||.|.|. +.. ....|.|+|||+|.++ +|++||++.|+|.++..+. ....|+
T Consensus 58 ~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~--------~~~~lG~~~i~l~~l~~~~~~~~~~~ 129 (138)
T 1ugk_A 58 HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS--------RDDIIGEVLIPLSGIELSEGKMLMNR 129 (138)
T ss_dssp SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSC--------CCCCCEEEEEECTTCCCTTCCEEEEE
T ss_pred ceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCC--------CCcEEEEEEEehhHccCCCCcchhhh
Confidence 67999999999999999999996 553 2469999999999876 7899999999999997654 445678
Q ss_pred EeEe
Q 004109 472 PLLV 475 (773)
Q Consensus 472 ~L~~ 475 (773)
+|..
T Consensus 130 ~l~~ 133 (138)
T 1ugk_A 130 EIIS 133 (138)
T ss_dssp ECBS
T ss_pred hhhc
Confidence 8854
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-17 Score=150.84 Aligned_cols=115 Identities=32% Similarity=0.543 Sum_probs=97.4
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCC-
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRI- 96 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~- 96 (773)
|...+++.|. .+.|.|+|++|+||+..+..+.+||||++++.+ .+++|++++++.||+|||+|.|.+...
T Consensus 20 G~l~~~l~~~----~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 95 (149)
T 1a25_A 20 GRIYIQAHID----REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD 95 (149)
T ss_dssp CEEEEEEEES----SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG
T ss_pred eEEEEEEEec----CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEecccc
Confidence 3445555553 468999999999999999889999999999973 578999999999999999999998643
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
....|.|+|||++.. +|++||++.++|.++..+ ...+||+|....
T Consensus 96 ~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~------~~~~W~~L~~~~ 141 (149)
T 1a25_A 96 KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA------GVDGWFKLLSQE 141 (149)
T ss_dssp GGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC------CEEEEEECBCHH
T ss_pred CCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC------ccCCeEEccCCC
Confidence 246899999999998 899999999999999754 257899998753
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-17 Score=155.12 Aligned_cols=116 Identities=27% Similarity=0.348 Sum_probs=98.1
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDV-TGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR 95 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~ 95 (773)
.|...++..| ..+.|.|+|++|+||+..|. .+.+||||++++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 18 ~G~l~~~l~y----~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 93 (171)
T 2q3x_A 18 MGDIQIGMED----KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP 93 (171)
T ss_dssp CCEEEEEEEE----ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC
T ss_pred ccEEEEEEEE----CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC
Confidence 3445666666 46799999999999999985 68999999999864 37899999999999999999999854
Q ss_pred CCCceEEEEEE-eCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 96 IQSSVLEVTVK-DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 96 ~~~~~l~i~V~-d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
....|.|+|| |++.+ +|++||++.++|.++..+. ...+||+|....
T Consensus 94 -~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 141 (171)
T 2q3x_A 94 -QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSS-----MVIGWYKLFPPS 141 (171)
T ss_dssp -TTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTS-----CEEEEEECBCGG
T ss_pred -CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCC-----CcceeEECCCcc
Confidence 4689999999 99988 8999999999999997543 367999998865
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=150.13 Aligned_cols=119 Identities=24% Similarity=0.299 Sum_probs=99.7
Q ss_pred ceeeEEEEEEEEccCcccCCCCCccCCCCCccccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC----
Q 004109 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---- 396 (773)
Q Consensus 321 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~---- 396 (773)
...|+|++++.+ .+..|.|.|.|++|+||+.+ +..|.+||||++.+++
T Consensus 9 ~~~G~l~~~l~y-------------------------~~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~ 60 (159)
T 1tjx_A 9 EKLGDICFSLRY-------------------------VPTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKR 60 (159)
T ss_dssp GCCCEEEEEEEE-------------------------ETTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEEETTEE
T ss_pred CcCCeEEEEEEE-------------------------cCCCCEEEEEEEEeeCCCCc---cCCCCCCeEEEEEEEeCCce
Confidence 457999888874 23448999999999999987 4558899999999952
Q ss_pred -eeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCcc-----------
Q 004109 397 -KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL----------- 461 (773)
Q Consensus 397 -~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l----------- 461 (773)
...+|+++++++||.|||.|.|.+... ...|.|+|||+|.++ +|++||.+.|++..+
T Consensus 61 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~--------~~~~iG~~~i~l~~~~~~~~~w~~l~ 132 (159)
T 1tjx_A 61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG--------KNDAIGKVFVGYNSTGAELRHWSDML 132 (159)
T ss_dssp EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS--------CCEEEEEEEEETTCCHHHHHHHHHHH
T ss_pred eceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCC--------CCceEEEEEECCCCCCcHHHHHHHHH
Confidence 468999999999999999999998754 468999999999876 799999999999954
Q ss_pred -ccCCeEEeeEEeEe
Q 004109 462 -ETDRVYTHSYPLLV 475 (773)
Q Consensus 462 -~~~~~~~~~~~L~~ 475 (773)
..++...+||+|..
T Consensus 133 ~~~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 133 ANPRRPIAQWHTLQV 147 (159)
T ss_dssp HSTTCCEEEEEECBC
T ss_pred HCCCCeeeeEEECcC
Confidence 34567889999965
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=149.71 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=100.5
Q ss_pred ceeeEEEEEEEEccCcccCCCCCccCCCCCccccccccCccceEEEEEEEccCCCCC-ccC---CCCCCCCcEEEEEEC-
Q 004109 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPM-KTK---DGRGTTDAYCVAKYG- 395 (773)
Q Consensus 321 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~-~~~---~~~~~~dpyv~v~~~- 395 (773)
...|+|.+++.+ .+..+.|.|.|++|+||+.. +.. +..+.+||||++.+.
T Consensus 10 ~~~G~l~~~l~y-------------------------~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~ 64 (147)
T 2enp_A 10 YQLGMLHFSTQY-------------------------DLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLP 64 (147)
T ss_dssp CCCCEEEEEEEE-------------------------ETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEET
T ss_pred CcceEEEEEEEE-------------------------cCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEe
Confidence 457899888874 23448999999999999973 331 123589999999995
Q ss_pred --CeeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEee
Q 004109 396 --QKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHS 470 (773)
Q Consensus 396 --~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 470 (773)
.+.+||+++++++||+|||.|.|.+... ...|+|+|||+|.++ +|++||++.|+|.++..+.....|
T Consensus 65 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~w 136 (147)
T 2enp_A 65 DQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFS--------RHCVIGKVSVPLCEVDLVKGGHWW 136 (147)
T ss_dssp CCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTC--------CSCCCEEEEEETTTSCTTTCCCEE
T ss_pred CCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCc--------CCcEEEEEEEechhcCCCCCccEE
Confidence 3578999999999999999999998642 468999999999876 789999999999999877666789
Q ss_pred EEeEe
Q 004109 471 YPLLV 475 (773)
Q Consensus 471 ~~L~~ 475 (773)
++|..
T Consensus 137 ~~L~~ 141 (147)
T 2enp_A 137 KALIP 141 (147)
T ss_dssp ECCBC
T ss_pred EEeec
Confidence 99864
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-17 Score=152.57 Aligned_cols=103 Identities=25% Similarity=0.365 Sum_probs=90.5
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe--------------eeeeeeccCCCCCccccEEEEE-EeC---C
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK--------------WVRTRTIIDSPTPKWNEQYTWE-VFD---P 423 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~--------------~~~T~~~~~t~~P~wne~~~f~-v~~---~ 423 (773)
|.|.|.|++|+||+.+ +..|.+||||++.+++. ..||+++++++||.|||.|.|. +.. .
T Consensus 18 ~~L~V~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~ 94 (142)
T 1rh8_A 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLM 94 (142)
T ss_dssp TEEEEEEEEEESCCCC---SSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHT
T ss_pred CEEEEEEEEecCCCCC---CCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHcc
Confidence 7999999999999987 45588999999999763 4799999999999999999997 442 3
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 424 ~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
...|.|+|||+|.++ +|++||.+.|+|.++..+.....||+|..
T Consensus 95 ~~~l~i~V~d~d~~~--------~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 138 (142)
T 1rh8_A 95 KKTLEVTVWDYDRFS--------SNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp TCEEEEEEEEECSSS--------CEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred CCEEEEEEEECCCCC--------CCceEEEEEEeccccccCCCCCeEEECCc
Confidence 679999999999876 78999999999999987777789999965
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.9e-17 Score=149.63 Aligned_cols=118 Identities=25% Similarity=0.451 Sum_probs=98.6
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEE-ecC
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFS-KDR 95 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~-v~~ 95 (773)
.|...+++.|+ +..+.|.|+|++|++|+..+..|.+||||++++.+ .+++|++++++.||+|||+|.|. +..
T Consensus 15 ~G~l~~~l~y~--~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 92 (142)
T 2chd_A 15 LGALEFSLLYD--QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITE 92 (142)
T ss_dssp CCEEEEEEEEE--GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCH
T ss_pred cceEEEEEEEe--CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCH
Confidence 34456666666 67789999999999999999889999999999975 68899999999999999999998 532
Q ss_pred --CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004109 96 --IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 96 --~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
+....|.|+|||++.. +|++||++.++|.++..+. ....|++|..+
T Consensus 93 ~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~-----~~~~~~~L~~p 141 (142)
T 2chd_A 93 EDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ-----RKNFNICLERV 141 (142)
T ss_dssp HHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTC-----CEEEEEECBCC
T ss_pred HHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCC-----ccEEEEecccC
Confidence 2246899999999998 8999999999999998653 24567777653
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-17 Score=150.21 Aligned_cols=118 Identities=29% Similarity=0.370 Sum_probs=97.8
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR-- 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~-- 95 (773)
|...+++.|. +..+.|.|+|++|+||+..+..+ +||||++++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 11 G~l~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 87 (142)
T 2dmg_A 11 GQIQLTIRHS--SQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPE 87 (142)
T ss_dssp CEEEEEEEEE--TTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHH
T ss_pred ceEEEEEEEe--CCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHH
Confidence 4456666665 66789999999999999999888 99999999943 57899999999999999999999842
Q ss_pred CCCceEEEEEEeCCCC-C--CeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004109 96 IQSSVLEVTVKDKDFV-K--DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
+....|.|+|||++.+ + +++||++.++|.++.... ...+||+|....+
T Consensus 88 l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 88 VQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAK-----GWTQWYDLTEDSG 138 (142)
T ss_dssp HHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTT-----CBCCBCCCBCSCS
T ss_pred hCcCEEEEEEEECCCccccCCcEEEEEEEecccccccc-----cccceeeccCCCC
Confidence 2346899999999986 3 479999999999987643 3678999998653
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.9e-17 Score=148.98 Aligned_cols=104 Identities=26% Similarity=0.434 Sum_probs=90.7
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEE-EeCC---CceEEEE
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWE-VFDP---CTVITIG 430 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~-v~~~---~~~l~v~ 430 (773)
..+.|.|.|++|+||+.+ +..|.+||||++.+++ ..+||+++++++||.|||.|.|. +... ...|.|+
T Consensus 27 ~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~ 103 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPM---DSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRIS 103 (142)
T ss_dssp GGTEEEEEEEEEESCCCC---CTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEE
T ss_pred CCCEEEEEEEEecCCCCC---CCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEE
Confidence 348999999999999987 4568899999999965 67899999999999999999998 5432 3689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004109 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
|||++.++ +|++||++.|++.++..++....|++|.
T Consensus 104 V~d~d~~~--------~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 139 (142)
T 2chd_A 104 VCDEDKFG--------HNEFIGETRFSLKKLKANQRKNFNICLE 139 (142)
T ss_dssp EEEECTTS--------CEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred EEECCCCC--------CCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence 99999876 7899999999999999888778888874
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=150.19 Aligned_cols=120 Identities=29% Similarity=0.378 Sum_probs=97.2
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR-- 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~-- 95 (773)
|...+++.|. +..+.|.|+|++|+||+..+..|.+||||++++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 12 G~l~~~l~y~--~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 89 (159)
T 1tjx_A 12 GDICFSLRYV--PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ 89 (159)
T ss_dssp CEEEEEEEEE--TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred CeEEEEEEEc--CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHH
Confidence 3345555554 66789999999999999999889999999999963 47899999999999999999999853
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCcc----------CCCCCCCCCCcCeEEEeeeCC
Q 004109 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEI----------PKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l----------~~~~~~~~~~~~~w~~L~~~~ 147 (773)
+....|.|+|||++.. +|++||.+.+++..+ .... .....+||+|....
T Consensus 90 l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~---~~~~~~W~~L~~~~ 149 (159)
T 1tjx_A 90 IQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP---RRPIAQWHTLQVEE 149 (159)
T ss_dssp GGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHST---TCCEEEEEECBCHH
T ss_pred hCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCC---CCeeeeEEECcCcc
Confidence 3356899999999998 899999999999864 2111 23456899988653
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=146.13 Aligned_cols=93 Identities=27% Similarity=0.344 Sum_probs=81.1
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCCC---ceEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDPC---TVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~~---~~l~v~ 430 (773)
+..+.|.|.|++|+||+.+ +..|.+||||++.+++ ...+|+++++++||.|||.|.|.+.... ..|.|+
T Consensus 13 ~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~ 89 (138)
T 3n5a_A 13 PSANSIIVNIIKARNLKAM---DIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIIT 89 (138)
T ss_dssp TTTTEEEEEEEEEESCCCC---BTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEE
T ss_pred CCCCeEEEEEEEeeCCCCc---CCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEE
Confidence 3448999999999999987 4458899999999964 4689999999999999999999987543 689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccc
Q 004109 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 462 (773)
|||+|.++ +|++||++.|++.++.
T Consensus 90 V~d~~~~~--------~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 90 VMDKDKLS--------RNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EEECCSSS--------CCEEEEEEEESSSSCH
T ss_pred EEECCCCC--------CCcEEEEEEEccccCC
Confidence 99999876 7999999999999763
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=148.80 Aligned_cols=102 Identities=25% Similarity=0.409 Sum_probs=90.5
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CeeeeeeeccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDN 434 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~ 434 (773)
+.|.|.|++|+||+.+ +..+.+||||++.++ ...+||+++++++||.|||+|.|.+... ...|.|+|||+
T Consensus 31 ~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 107 (149)
T 1a25_A 31 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 107 (149)
T ss_dssp SEEEEEEEEEESCCCC---STTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEEeeCCCCC---CCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEEC
Confidence 6899999999999987 455889999999996 3578999999999999999999999764 46899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
|.++ +|++||.+.|++.++..+ ...+||+|..
T Consensus 108 d~~~--------~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 108 DLTS--------RNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp CSSS--------CCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCC--------CCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 9876 799999999999999876 4789999965
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=149.41 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=98.3
Q ss_pred ceeeEEEEEEEEccCcccCCCCCccCCCCCccccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC----
Q 004109 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---- 396 (773)
Q Consensus 321 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~---- 396 (773)
...|+|.+++.+ .+..+.|.|.|++|+||+.+ +..|.+||||++.+++
T Consensus 21 ~~~G~l~~~l~y-------------------------~~~~~~L~V~v~~a~~L~~~---d~~g~~DPyv~v~l~~~~~~ 72 (166)
T 2cm5_A 21 EERGKILVSLMY-------------------------STQQGGLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGK 72 (166)
T ss_dssp CCCCEEEEEEEE-------------------------ETTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEETC---
T ss_pred CccceEEEEEEE-------------------------ECCCCEEEEEEEEeECCCCc---cCCCCCCcEEEEEEECCCCc
Confidence 457888888874 23348999999999999987 4458899999999965
Q ss_pred -eeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccc----------
Q 004109 397 -KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE---------- 462 (773)
Q Consensus 397 -~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~---------- 462 (773)
..+||+++++++||.|||.|.|.+... ...|.|+|||+|.++ +|++||.+.|++.++.
T Consensus 73 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~--------~~~~iG~~~i~l~~~~~~~~~W~~l~ 144 (166)
T 2cm5_A 73 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGK--------SNDYIGGCQLGISAKGERLKHWYECL 144 (166)
T ss_dssp CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS--------CCEEEEEEEEETTCCHHHHHHHHHHH
T ss_pred cceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCC--------CCcEEEeEEEecccCCchhHHHHHHH
Confidence 578999999999999999999999753 569999999999876 7899999999999863
Q ss_pred --cCCeEEeeEEeEe
Q 004109 463 --TDRVYTHSYPLLV 475 (773)
Q Consensus 463 --~~~~~~~~~~L~~ 475 (773)
.++....|++|..
T Consensus 145 ~~~~~~~~~Wh~L~~ 159 (166)
T 2cm5_A 145 KNKDKKIERWHQLQN 159 (166)
T ss_dssp HCTTCCEEEEEECBC
T ss_pred hCCCCcceEeeECCC
Confidence 3455666666644
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=150.69 Aligned_cols=101 Identities=24% Similarity=0.395 Sum_probs=88.3
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--CC
Q 004109 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQ 97 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~--~~ 97 (773)
..+++.|. +..+.|.|+|++|+||+..+..|.+||||++++.+ .+++|++++++.||+|||+|.|.+.. +.
T Consensus 26 l~~~l~y~--~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 103 (166)
T 2cm5_A 26 ILVSLMYS--TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLA 103 (166)
T ss_dssp EEEEEEEE--TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGG
T ss_pred EEEEEEEE--CCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcC
Confidence 44555554 67789999999999999999889999999999976 57899999999999999999999853 33
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccC
Q 004109 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIP 127 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~ 127 (773)
...|.|+|||++.. ++++||++.+++.++.
T Consensus 104 ~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 104 KKSLDISVWDYDIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp GCEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred CCEEEEEEEECCCCCCCcEEEeEEEecccCC
Confidence 57899999999998 8999999999999863
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=146.66 Aligned_cols=114 Identities=27% Similarity=0.493 Sum_probs=93.3
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--CC
Q 004109 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQ 97 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~--~~ 97 (773)
..+++.|. +..+.|.|+|++|+||+..+..|.+||||++++.+ .+++|++++++.||+|||+|.|.+.. +.
T Consensus 5 l~~sl~y~--~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~ 82 (138)
T 3n5a_A 5 LLLSLCYN--PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLR 82 (138)
T ss_dssp EEEEEEEE--TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGG
T ss_pred EEEEEEEc--CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcC
Confidence 45555555 66789999999999999999889999999999974 47899999999999999999999853 23
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
...|.|+|||.+.. +|++||++.+++.++..+ ..+|++|....
T Consensus 83 ~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~~~-------~~~W~~l~~~~ 126 (138)
T 3n5a_A 83 ETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGE-------VKHWKDMIARP 126 (138)
T ss_dssp GEEEEEEEEECCSSSCCEEEEEEEESSSSCHHH-------HHHHHHHHHST
T ss_pred ceEEEEEEEECCCCCCCcEEEEEEEccccCChH-------HHHHHHHHhCC
Confidence 47899999999998 899999999999875422 33555555443
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-16 Score=147.07 Aligned_cols=117 Identities=25% Similarity=0.350 Sum_probs=88.5
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--Ce---eeeeeccCCCCCCeeecEEEEEecCC
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG--NY---KGTTRHFEKKTNPEWNQVFAFSKDRI 96 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~--~~---~~~T~~~~~~~nP~WnE~f~f~v~~~ 96 (773)
.|...+++.|. +..+.|.|+|++|+||+..+..+.+||||++++. +. +++|++++++.||+|||+|.|.+...
T Consensus 16 ~G~l~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 93 (153)
T 1w15_A 16 RGELLVSLCYQ--STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE 93 (153)
T ss_dssp CCEEEEEEEEE--TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSS
T ss_pred ccEEEEEEEEc--CCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHH
Confidence 34445555555 6678999999999999999988999999999994 32 67999999999999999999998543
Q ss_pred --CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 97 --QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 97 --~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
....|.|+|||++.+ ++++||++.+++.+.. ....+|++|....
T Consensus 94 ~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~~~-------~~~~~W~~l~~~p 140 (153)
T 1w15_A 94 SLEEISVEFLVLDSERGSRNEVIGRLVLGATAEG-------SGGGHWKEICDFP 140 (153)
T ss_dssp SSTTEEEEEEEEECCTTSCCEEEEEEEESTTCCS-------HHHHHHHHHHHST
T ss_pred HhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCc-------hHHHHHHHHHhCC
Confidence 357899999999988 8999999999998721 1234566665543
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=148.89 Aligned_cols=119 Identities=25% Similarity=0.322 Sum_probs=97.2
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCC-CC------CCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEE
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPK-DV------TGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAF 91 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~-d~------~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f 91 (773)
.|...+++.|+ +..+.|.|+|++|+||+.. +. .+.+||||++++.+ ++++|++++++.||+|||+|.|
T Consensus 12 ~G~l~~~l~y~--~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f 89 (147)
T 2enp_A 12 LGMLHFSTQYD--LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTF 89 (147)
T ss_dssp CCEEEEEEEEE--TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEE
T ss_pred ceEEEEEEEEc--CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEE
Confidence 44456666665 5668999999999999984 43 35899999999973 5789999999999999999999
Q ss_pred EecC--CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 92 SKDR--IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 92 ~v~~--~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
.+.. +....|.|+|||++.+ ++++||++.++|.++.... ....|+.|....
T Consensus 90 ~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~~ 143 (147)
T 2enp_A 90 EIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVK-----GGHWWKALIPSG 143 (147)
T ss_dssp CCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTT-----CCCEEECCBCCC
T ss_pred EeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCC-----CccEEEEeecCC
Confidence 9853 2346899999999988 8999999999999997542 246899998653
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.66 E-value=8.5e-16 Score=144.58 Aligned_cols=116 Identities=18% Similarity=0.238 Sum_probs=88.6
Q ss_pred ceeeEEEEEEEEccCcccCCCCCccCCCCCccccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCe-
Q 004109 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQK- 397 (773)
Q Consensus 321 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~- 397 (773)
...|+|.+++.. .+..+.|.|.|++|+||+.+ +..|.+||||++.+ ++.
T Consensus 14 ~~~G~l~~~l~y-------------------------~~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~ 65 (153)
T 1w15_A 14 SGRGELLVSLCY-------------------------QSTTNTLTVVVLKARHLPKS---DVSGLSDPYVKVNLYHAKKR 65 (153)
T ss_dssp --CCEEEEEEEE-------------------------ETTTTEEEEEEEEEESCC---------CCCEEEEEEEEETTEE
T ss_pred ccccEEEEEEEE-------------------------cCCCCEEEEEEEEeECCCCc---CCCCCCCeEEEEEEEeCCeE
Confidence 457888888764 23348999999999999987 44578999999999 443
Q ss_pred --eeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEE
Q 004109 398 --WVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472 (773)
Q Consensus 398 --~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 472 (773)
.+||+++++++||.|||+|.|.+... ...|.|+|||+|.++ +|++||++.|++++. +....+||+
T Consensus 66 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~--------~~~~lG~~~i~l~~~--~~~~~~W~~ 135 (153)
T 1w15_A 66 ISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGS--------RNEVIGRLVLGATAE--GSGGGHWKE 135 (153)
T ss_dssp EEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTS--------CCEEEEEEEESTTCC--SHHHHHHHH
T ss_pred eceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCC--------CCcEEEEEEECCCCC--chHHHHHHH
Confidence 57999999999999999999998764 368999999999876 789999999999983 222344555
Q ss_pred eE
Q 004109 473 LL 474 (773)
Q Consensus 473 L~ 474 (773)
|.
T Consensus 136 l~ 137 (153)
T 1w15_A 136 IC 137 (153)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.9e-16 Score=137.58 Aligned_cols=116 Identities=16% Similarity=0.232 Sum_probs=101.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccC-CCCCCeeecEEEEEecC--CCCceEEEEEEeCCCC-CCe
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFSKDR--IQSSVLEVTVKDKDFV-KDD 114 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~-~~~nP~WnE~f~f~v~~--~~~~~l~i~V~d~~~~-~d~ 114 (773)
-|+|+|.+|.+|+ |++|||+++.+.+.+++|++++ ++.||+|||.|.|++.. ..++.|.|.|+|++++ +++
T Consensus 22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nr 96 (144)
T 3l9b_A 22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNK 96 (144)
T ss_dssp EEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCE
T ss_pred EEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCC
Confidence 4999999999998 4789999999999999999997 79999999999999843 3478999999999999 999
Q ss_pred eeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEecc
Q 004109 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (773)
+||++.++|+++..... ...+-+|.+.+++...++|.+.+.|.+.
T Consensus 97 lIG~~~i~Lq~lv~~~~-----l~l~~~LvD~n~~~~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 97 LIGTFRMVLQKVVEENR-----VEVSDTLIDDNNAIIKTSLSMEVRYQAA 141 (144)
T ss_dssp EEEEEEEESHHHHHHSE-----EEEEEEEECTTSCEEEEEEEEEEEEEET
T ss_pred EEEEEEEEhHHhccCCe-----EEEeecccCCCCCccccEEEEEEEecCC
Confidence 99999999999997642 2346788888887778999999999864
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=136.96 Aligned_cols=87 Identities=29% Similarity=0.391 Sum_probs=73.7
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccC-CCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CC
Q 004109 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KD 113 (773)
Q Consensus 36 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~-~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d 113 (773)
.++.|.|+|++|+++.. .|.+||||+++ .+..+|+++. ++.||+|||+|.|.+.+. ...|.|+|||+| . +|
T Consensus 3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~d 75 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIWD 75 (131)
T ss_dssp CCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-SSCE
T ss_pred cceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-CCCC
Confidence 36799999999998853 57899999999 3444566664 699999999999999764 567999999999 7 99
Q ss_pred eeeEEEEEEcCccCCC
Q 004109 114 DFMGRVLFDLNEIPKR 129 (773)
Q Consensus 114 ~~lG~~~i~l~~l~~~ 129 (773)
++||++.|+|.++...
T Consensus 76 d~iG~~~i~l~~l~~~ 91 (131)
T 2cjt_A 76 TMVGTVWIPLRTIRQS 91 (131)
T ss_dssp EEEEEEEEEGGGSCBC
T ss_pred CeEEEEEEEHHHhhhc
Confidence 9999999999998754
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=138.22 Aligned_cols=86 Identities=23% Similarity=0.388 Sum_probs=74.3
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeecc-CCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 004109 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTII-DSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG 439 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~-~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~ 439 (773)
.+.|.|+|++|++|+. .|.+||||+++ ++..+|++++ +++||.|||.|.|.+.++...|.|+|||+| ++
T Consensus 4 ~~~L~V~V~~A~~l~~------~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~- 73 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA------QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI- 73 (131)
T ss_dssp CEEEEEEEEEEECSSC------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SS-
T ss_pred ceEEEEEEEEeECCCC------CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CC-
Confidence 4899999999998842 36799999999 4455676665 699999999999999988889999999999 65
Q ss_pred CCCCCCCCCCccEEEEEecCcccc
Q 004109 440 GDKAGGARDSRIGKVRIRLSTLET 463 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~ 463 (773)
+|++||++.|+|+++..
T Consensus 74 -------~dd~iG~~~i~l~~l~~ 90 (131)
T 2cjt_A 74 -------WDTMVGTVWIPLRTIRQ 90 (131)
T ss_dssp -------CEEEEEEEEEEGGGSCB
T ss_pred -------CCCeEEEEEEEHHHhhh
Confidence 79999999999999854
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-15 Score=133.00 Aligned_cols=119 Identities=16% Similarity=0.250 Sum_probs=103.5
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeecc-CCCCCccccEEEEEEeCC---CceEEEEEEeCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTII-DSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHL 437 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~-~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~ 437 (773)
-.|+|.|.+|.||+ |++|||+++.+.+.+++|+++. .+.||+|||.|.|++..+ ...|.|.|+|++.+
T Consensus 21 msL~V~l~~a~~Lp--------g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v 92 (144)
T 3l9b_A 21 MALIVHLKTVSELR--------GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV 92 (144)
T ss_dssp EEEEEEEEEEESCC--------SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT
T ss_pred EEEEEEEEEecCCC--------CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc
Confidence 47899999999997 5799999999999999999998 599999999999999854 78999999999998
Q ss_pred CCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEeecch
Q 004109 438 HGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSL 498 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~~~ 498 (773)
+ ++.+||++.|+|.++..+.....+-+|.+.+.+ .-.++|.+.++|.|+.+
T Consensus 93 ~--------~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~--~~~a~I~l~l~Y~pp~g 143 (144)
T 3l9b_A 93 F--------SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNA--IIKTSLSMEVRYQAADG 143 (144)
T ss_dssp S--------CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSC--EEEEEEEEEEEEEETTC
T ss_pred c--------CCCEEEEEEEEhHHhccCCeEEEeecccCCCCC--ccccEEEEEEEecCCCC
Confidence 7 899999999999999888777778888775432 23488999999987653
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.9e-15 Score=139.89 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=89.3
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccC-CCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CC
Q 004109 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KD 113 (773)
Q Consensus 36 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~-~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d 113 (773)
.++.|.|+|++|++++ ..+.+||||+++ .+..+|++++ ++.||+|||+|.|.+.+. ...|.|+|||+| . +|
T Consensus 12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~d 84 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIWD 84 (167)
T ss_dssp CCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-SSCC
T ss_pred ceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-CCCC
Confidence 4679999999999884 257899999999 4455677775 699999999999999864 467999999999 6 99
Q ss_pred eeeEEEEEEcCccCCCCCCCC--CCcCeEEEeeeCCCC------ceeeEEEEEEEEe
Q 004109 114 DFMGRVLFDLNEIPKRVPPDS--PLAPQWYRLEDRKGD------KVRGELMLAVWMG 162 (773)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~--~~~~~w~~L~~~~~~------~~~G~i~l~~~~~ 162 (773)
++||++.|+|.++..... +. ...+.|+++....|+ ...|.+++.+++.
T Consensus 85 d~iG~~~i~L~~l~~~~~-~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 85 TMVGTVWIPLRTIRQSNE-EGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp EEEEEEEEEGGGSCBCSS-CCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred ceEEEEEEEHHHhcccCc-CCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence 999999999999875431 11 123345555544332 2345677777664
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=138.32 Aligned_cols=118 Identities=21% Similarity=0.323 Sum_probs=89.2
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeecc-CCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTII-DSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~-~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~ 438 (773)
..+.|.|+|++|++|+. .|.+||||+++ ++..||++++ +++||.|||.|.|.+.+....|.|+|||+| ++
T Consensus 12 ~~~~L~V~V~~A~~l~~------~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~ 82 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDGA------QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI 82 (167)
T ss_dssp CCCEEEEEEEEEECSSC------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SS
T ss_pred ceEEEEEEEEEEECCCC------CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CC
Confidence 35899999999998842 36799999999 4456787776 699999999999999988889999999999 65
Q ss_pred CCCCCCCCCCCccEEEEEecCccccCC------eEEeeEEeEeecCC--Cc--ccccEEEEEEEEe
Q 004109 439 GGDKAGGARDSRIGKVRIRLSTLETDR------VYTHSYPLLVLYPN--GV--KKMGEIHLAVRFT 494 (773)
Q Consensus 439 ~~~~~~~~~d~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~~--g~--~~~G~v~l~~~~~ 494 (773)
+|++||++.|+|.++.... +...||.+...+.+ |. ...|.+.+.++|.
T Consensus 83 --------~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 83 --------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp --------CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred --------CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence 7999999999999985432 34455665432211 11 1135566777763
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=164.82 Aligned_cols=119 Identities=26% Similarity=0.440 Sum_probs=102.7
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCC
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHL 437 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~ 437 (773)
...|.|.|.|++|+||++. |..|.+||||++.+++..++|+++++++||.|||.|.|.+..+ ...|+|+|||+|.+
T Consensus 384 ~~~~~l~v~v~~a~~L~~~---d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~ 460 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKAC---KPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF 460 (510)
T ss_dssp --CEEEEEEEEEEESCCCC---STTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred CCCceEEEEeceeecCCCC---CCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence 4568999999999999887 5568899999999999999999999999999999999999876 47899999999987
Q ss_pred CCCCCCCCCCCCccEEEEEecCccccCCe----EEeeEEeEeecCCCcccccEEEEEEEEe
Q 004109 438 HGGDKAGGARDSRIGKVRIRLSTLETDRV----YTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~g~~~~G~v~l~~~~~ 494 (773)
+ +|++||++.+++.++..+.. ...|++|.. +..|+|++++.+.
T Consensus 461 ~--------~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~------~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 461 S--------PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHE------VPTGEVWVRFDLQ 507 (510)
T ss_dssp S--------SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBS------SSSCEEEEEEEEE
T ss_pred C--------CCCceEEEEEEHHHhccccCCCCceeeeecCCC------CCCceEEEEEEEE
Confidence 6 89999999999999976543 678999853 2459999888773
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-14 Score=157.87 Aligned_cols=114 Identities=18% Similarity=0.290 Sum_probs=97.1
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeC--CCceEEEEEEeCCC
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD--PCTVITIGVFDNCH 436 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~--~~~~l~v~v~d~~~ 436 (773)
...|.|+|.|++|+||+. |..|.+||||+|+++++.+||+++++++||+|||.|.|.+.+ ....|+|+|||+|.
T Consensus 391 ~~~~~L~V~V~~A~~L~~----D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~ 466 (540)
T 3nsj_A 391 RGLAHLVVSNFRAEHLWG----DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY 466 (540)
T ss_dssp TTEEEEEEEEEEEESCCC----SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS
T ss_pred CcccEEEEEEEEccCCCc----ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC
Confidence 446899999999999986 345789999999999999999999999999999999998753 57899999999998
Q ss_pred CCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEeecc
Q 004109 437 LHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSS 497 (773)
Q Consensus 437 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~~ 497 (773)
.+ +||+||.+.++|.. | ....|++| +.|.|++.+.+++..
T Consensus 467 ~~--------~dD~LG~~~~~L~~---g-~~~~~~~l---------~~G~l~~~~~~~c~p 506 (540)
T 3nsj_A 467 GW--------DDDLLGSCDRSPHS---G-FHEVTCEL---------NHGRVKFSYHAKCLP 506 (540)
T ss_dssp SS--------CCEEEEEEEECCCS---E-EEEEEEEC---------SSSEEEEEEEEEECT
T ss_pred CC--------CCCEEEEEEEEeeC---C-cEEEEEEc---------CCeEEEEEEEEEECC
Confidence 76 78999999999983 3 35678876 238999888876643
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=163.56 Aligned_cols=123 Identities=27% Similarity=0.416 Sum_probs=105.0
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CC
Q 004109 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KD 113 (773)
Q Consensus 35 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d 113 (773)
...+.|.|+|++|+||++.|..|.+||||++.+++++++|++++++.||+|||+|.|.+.......|.|+|||.|.+ +|
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~ 463 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPD 463 (510)
T ss_dssp --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSC
T ss_pred CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCC
Confidence 46689999999999999999999999999999999999999999999999999999999877778899999999998 89
Q ss_pred eeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEe
Q 004109 114 DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (773)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (773)
++||++.++|.++..+.... .....|++|.... .|+|.+++.+.
T Consensus 464 d~lG~~~~~l~~l~~~~~~~-~~~~~~~~l~~~~----~G~i~l~~~l~ 507 (510)
T 3jzy_A 464 DFLGRTEIPVAKIRTEQESK-GPMTRRLLLHEVP----TGEVWVRFDLQ 507 (510)
T ss_dssp CEEEEEEEEHHHHHHHHHHH-CSCCEEEECBSSS----SCEEEEEEEEE
T ss_pred CceEEEEEEHHHhccccCCC-CceeeeecCCCCC----CceEEEEEEEE
Confidence 99999999999998643211 1256899987653 58888887653
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-14 Score=157.16 Aligned_cols=112 Identities=22% Similarity=0.284 Sum_probs=95.4
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEec-CCCCceEEEEEEeCCCC-C
Q 004109 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKD-RIQSSVLEVTVKDKDFV-K 112 (773)
Q Consensus 35 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~-~~~~~~l~i~V~d~~~~-~ 112 (773)
..++.|+|+|++|+||+. |..|.+||||+|++++++++|+++++++||+|||+|.|.+. ......|.|+|||.|.. +
T Consensus 391 ~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~ 469 (540)
T 3nsj_A 391 RGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWD 469 (540)
T ss_dssp TTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSC
T ss_pred CcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCC
Confidence 458899999999999998 88899999999999999999999999999999999999863 23578899999999998 8
Q ss_pred CeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004109 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
||+||++.++|.. + ....|++|. .|+|++++.+..
T Consensus 470 dD~LG~~~~~L~~---g------~~~~~~~l~-------~G~l~~~~~~~c 504 (540)
T 3nsj_A 470 DDLLGSCDRSPHS---G------FHEVTCELN-------HGRVKFSYHAKC 504 (540)
T ss_dssp CEEEEEEEECCCS---E------EEEEEEECS-------SSEEEEEEEEEE
T ss_pred CCEEEEEEEEeeC---C------cEEEEEEcC-------CeEEEEEEEEEE
Confidence 8999999999872 2 134687754 278888876543
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=156.42 Aligned_cols=119 Identities=23% Similarity=0.387 Sum_probs=103.0
Q ss_pred ceeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeeeeccCCC-CCCeeecEEEEEecCCCCceEEEEEEe
Q 004109 36 QMQYLYVRVVKAKDLPPKDV--TGSCDPYVEVKMGN-----YKGTTRHFEKK-TNPEWNQVFAFSKDRIQSSVLEVTVKD 107 (773)
Q Consensus 36 ~~~~L~V~v~~a~~L~~~d~--~~~~dpyv~v~~~~-----~~~~T~~~~~~-~nP~WnE~f~f~v~~~~~~~l~i~V~d 107 (773)
..+.|.|+|++|++|+..+. .+.+||||+|.+.+ .+++|++++++ .||+|||+|.|.+..+....|+|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 55789999999999998873 68899999999954 57899999887 999999999999976555789999999
Q ss_pred CCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCc-eeeEEEEEEEEe
Q 004109 108 KDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK-VRGELMLAVWMG 162 (773)
Q Consensus 108 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~ 162 (773)
.|.+ +|++||++.++|..|..+ .+|++|.+..|+. ..|.|.+.+.+.
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G--------~r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCE--------EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCC--------cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence 9988 999999999999999754 3799999988876 357888888663
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.5e-15 Score=163.33 Aligned_cols=121 Identities=20% Similarity=0.343 Sum_probs=21.2
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCC---CCCccccEEEEEEeCCCceEEEEEEeC-
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDS---PTPKWNEQYTWEVFDPCTVITIGVFDN- 434 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t---~~P~wne~~~f~v~~~~~~l~v~v~d~- 434 (773)
..+.|+|+|++|+||+++ + ||||++.++++ +.||+++++| +||.|||.|.|.+......|.|+|||+
T Consensus 9 ~~~~L~V~VieAk~L~~~---d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~ 80 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPK---K-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDS 80 (483)
T ss_dssp EEECC-----------------------------------------------------CCEECC----------------
T ss_pred eccEEEEEEEEcCCcCCC---C-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecC
Confidence 347899999999999875 2 99999999886 6799999999 999999999999766678999999994
Q ss_pred CC---CCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecC---------------------CCcccccEEEEE
Q 004109 435 CH---LHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYP---------------------NGVKKMGEIHLA 490 (773)
Q Consensus 435 ~~---~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~---------------------~g~~~~G~v~l~ 490 (773)
|. .+ +|++||++.|++.++..+....+||+|..... +|.+..|.|+|+
T Consensus 81 d~~~~~~--------~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~ 152 (483)
T 3bxj_A 81 DKKRKKD--------KAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLK 152 (483)
T ss_dssp ----------------------------------CCEECC--------------------------------------CE
T ss_pred CccccCC--------CCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEE
Confidence 42 33 78999999999999998888899999965443 122346899999
Q ss_pred EEEeec
Q 004109 491 VRFTCS 496 (773)
Q Consensus 491 ~~~~~~ 496 (773)
++|.+.
T Consensus 153 v~~~~~ 158 (483)
T 3bxj_A 153 ARYQTM 158 (483)
T ss_dssp EEEEEC
T ss_pred EEeeee
Confidence 998654
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-13 Score=152.73 Aligned_cols=120 Identities=18% Similarity=0.283 Sum_probs=98.9
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCC-CCCccccEEEEEEeCC-CceEEEEEE
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDS-PTPKWNEQYTWEVFDP-CTVITIGVF 432 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t-~~P~wne~~~f~v~~~-~~~l~v~v~ 432 (773)
..+.|+|+|++|++|+..+. ...+.+||||+|.+.+ ...||++++++ +||+|||+|.|.+..+ ...|+|+||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~-~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~ 573 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNK-NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE 573 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSS-CSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccc-cccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEE
Confidence 45899999999999998742 1257899999999944 57899999997 9999999999999876 478999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcc-cccEEEEEEEE
Q 004109 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRF 493 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~v~l~~~~ 493 (773)
|+|.++ +|++||++.|+|..+..|. +|+||.+. .|.. ..|.|.+.++|
T Consensus 574 D~D~~~--------~dd~iG~~~ipl~~L~~G~---r~v~L~d~--~g~~~~~~~L~v~i~~ 622 (624)
T 1djx_A 574 DYDSSS--------KNDFIGQSTIPWNSLKQGY---RHVHLLSK--NGDQHPSATLFVKISI 622 (624)
T ss_dssp ECCSSS--------CCEEEEEEEEEGGGBCCEE---EEEEEECT--TSCEEEEEEEEEEEEE
T ss_pred EcCCCC--------CCceeEEEEEEHHHcCCCc---EEEeCCCC--CcCCCCceEEEEEEEE
Confidence 999876 7999999999999998763 59999764 3332 34677777766
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=156.41 Aligned_cols=107 Identities=28% Similarity=0.481 Sum_probs=94.8
Q ss_pred CceeEEEEEEEEeecCCC---CCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeC
Q 004109 35 EQMQYLYVRVVKAKDLPP---KDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDK 108 (773)
Q Consensus 35 ~~~~~L~V~v~~a~~L~~---~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~ 108 (773)
.+.+.|.|+|++|++|+. .|..|.+||||++++++ .+++|++++++.||+|||+|.|.+.......|.|+|||+
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~ 94 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 94 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence 457899999999999998 77778999999999985 678999999999999999999999876678999999999
Q ss_pred CCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004109 109 DFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 109 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
|.++|++||++.++|.++..+. ....|++|...
T Consensus 95 D~~~ddfIG~v~I~L~~L~~g~-----~~~~w~~L~~~ 127 (749)
T 1cjy_A 95 NYVMDETLGTATFTVSSMKVGE-----KKEVPFIFNQV 127 (749)
T ss_dssp CSSSCEEEEEECCBSTTSCTTC-----CCCEEEEETTT
T ss_pred CCCCCceeEEEEEEHHHcCCCC-----ceEEEEecCCC
Confidence 9877999999999999997543 35689999754
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-13 Score=154.12 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=92.8
Q ss_pred CccceEEEEEEEccCCCC---CccCCCCCCCCcEEEEEECC---eeeeeeeccCCCCCccccEEEEEEeC-CCceEEEEE
Q 004109 359 SSIGVLELGILNAQGLMP---MKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGV 431 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~---~~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v 431 (773)
.+.|.|+|.|++|+||+. + |..|.+||||++.+++ ..+||+++++++||+|||.|.|.+.. ....|+|+|
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~---D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V 91 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFG---DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITL 91 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHH---HHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEE
T ss_pred CCccEEEEEEEEEECCCCcccc---CCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEE
Confidence 456999999999999997 5 3457899999999984 67899999999999999999999987 467999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
||+|.+ .|++||++.|+|.++..+.....|++|.
T Consensus 92 ~D~D~~---------~ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 92 MDANYV---------MDETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp EECCSS---------SCEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred EECCCC---------CCceeEEEEEEHHHcCCCCceEEEEecC
Confidence 999886 2889999999999999888888999994
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.5e-13 Score=150.30 Aligned_cols=100 Identities=21% Similarity=0.388 Sum_probs=13.1
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCC---CCCeeecEEEEEecCCCCceEEEEEEeC-C--
Q 004109 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKK---TNPEWNQVFAFSKDRIQSSVLEVTVKDK-D-- 109 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-~~~T~~~~~~---~nP~WnE~f~f~v~~~~~~~l~i~V~d~-~-- 109 (773)
.+.|+|+|++|++|+++| ||||++.++++ ..||++++++ .||+|||+|.|.+... ...|.|+|||. |
T Consensus 10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~d~~ 83 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDSDKK 83 (483)
T ss_dssp EECC--------------------------------------------------CCEECC--------------------
T ss_pred ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecCCcc
Confidence 467999999999999876 99999999985 6799999998 9999999999986433 57899999994 4
Q ss_pred -CC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 110 -FV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 110 -~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
.. +|++||++.|++.++..+. ...+||+|.+..
T Consensus 84 ~~~~~d~~lG~v~i~l~~l~~~~-----~~~~W~~L~~~~ 118 (483)
T 3bxj_A 84 RKKDKAGYVGLVTVPVATLAGRH-----FTEQWYPVTLPT 118 (483)
T ss_dssp ----------------------------CCEECC------
T ss_pred ccCCCCceEEEEEEEHHHhcCCC-----CCCeEEECCCCC
Confidence 24 8999999999999998643 357899996543
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-10 Score=134.17 Aligned_cols=112 Identities=19% Similarity=0.307 Sum_probs=94.1
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeccCC-CCCCeeecE-EEEE-ecCCCCceEEEEEE
Q 004109 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------YKGTTRHFEK-KTNPEWNQV-FAFS-KDRIQSSVLEVTVK 106 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-------~~~~T~~~~~-~~nP~WnE~-f~f~-v~~~~~~~l~i~V~ 106 (773)
.+.|.|+|++|++|+.. .+||||+|.+.+ .+++|+++++ +.||+|||+ |.|. +..+.-..|+|+||
T Consensus 649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~ 724 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS 724 (816)
T ss_dssp CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence 36899999999999853 589999999975 5679999975 699999998 9998 75544578999999
Q ss_pred eCCCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCcee-eEEEEEEEEec
Q 004109 107 DKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVR-GELMLAVWMGT 163 (773)
Q Consensus 107 d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~-G~i~l~~~~~~ 163 (773)
|.+ +++||++.++|..|..+ .++++|.+..|+... +.|.+.+.+..
T Consensus 725 D~d---ddfiG~~~ipL~~L~~G--------yR~vpL~~~~g~~~~~atLfv~i~~~~ 771 (816)
T 3qr0_A 725 EEN---GKFIGHRVMPLDGIKPG--------YRHVPLRNESNRPLGLASVFAHIVAKD 771 (816)
T ss_dssp ETT---SCEEEEEEEESTTCCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred ecC---CCeeeEEEEEHHHcCCc--------ceEEEEeCCCCCCCCceEEEEEEEEEe
Confidence 985 78999999999999754 368999999887654 89999887763
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-10 Score=135.42 Aligned_cols=111 Identities=21% Similarity=0.299 Sum_probs=93.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeccCC-CCCCeeec-EEEEE-ecCCCCceEEEEEEeC
Q 004109 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHFEK-KTNPEWNQ-VFAFS-KDRIQSSVLEVTVKDK 108 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~------~~~~T~~~~~-~~nP~WnE-~f~f~-v~~~~~~~l~i~V~d~ 108 (773)
..|.|+|++|++|+.. .+||||+|.+.+ .+++|+++.+ +.||+||| +|.|. +..+....|+|+|||.
T Consensus 725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~ 800 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE 800 (885)
T ss_dssp EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence 4799999999999853 589999999975 2579999965 69999999 69998 6544456899999998
Q ss_pred CCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCc-eeeEEEEEEEEec
Q 004109 109 DFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK-VRGELMLAVWMGT 163 (773)
Q Consensus 109 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~~ 163 (773)
| +++||++.++|..|..+ .++++|.+..|+. ..|.|.+.+.+..
T Consensus 801 d---ddfiG~~~lpL~~L~~G--------yR~vpL~~~~g~~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 801 G---GKFVGHRILPVSAIRSG--------YHYVCLRNEANQPLCLPALLIYTEASD 845 (885)
T ss_dssp T---TEEEEEEEEETTTCCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred C---ccEEeeEEEEHHHcCCC--------ceEEEecCCCCCccCceEEEEEEEEEe
Confidence 7 89999999999999754 3689999998876 5689999988764
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.16 E-value=6e-11 Score=138.54 Aligned_cols=113 Identities=32% Similarity=0.577 Sum_probs=95.2
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeccCCCCCCeeecEEEEEecCC-CCce
Q 004109 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAFSKDRI-QSSV 100 (773)
Q Consensus 27 ~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~-----~~~~~~T~~~~~~~nP~WnE~f~f~v~~~-~~~~ 100 (773)
+...+.+. .+.|.|+|++|++|.+.|..|.+||||++++ ...+++|+++++++||.|||+|.|.+... ....
T Consensus 163 i~~~~~~~--~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~ 240 (674)
T 3pfq_A 163 IYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRR 240 (674)
T ss_dssp EEEEEEEC--SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCE
T ss_pred ccccceec--cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccce
Confidence 34444433 4689999999999999999999999999999 33678999999999999999999998532 3456
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
|.|+|||.|.. +|++||++.+++.++.... ...|+.|....
T Consensus 241 L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~------~~~w~~Lls~~ 282 (674)
T 3pfq_A 241 LSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 282 (674)
T ss_dssp EEEEEEECCSSSCCEECCBCCCBTTHHHHCC------EEEEEECBCTT
T ss_pred eeeEEeecccccccccccccccchhhhccCC------cccceeecccc
Confidence 99999999998 9999999999999997542 47899998765
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-10 Score=132.65 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=91.3
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeee-ccC-CCCCCeeec-EEEE-EecCCCCceEEEEE
Q 004109 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTR-HFE-KKTNPEWNQ-VFAF-SKDRIQSSVLEVTV 105 (773)
Q Consensus 36 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~------~~~~T~-~~~-~~~nP~WnE-~f~f-~v~~~~~~~l~i~V 105 (773)
..+.|.|+|++|++|+. +.+||||+|.+.+ .+++|+ +++ ++.||+||| +|.| .+..+.-..|+|+|
T Consensus 676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V 751 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 751 (799)
T ss_dssp TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence 35789999999999984 4689999999943 357899 885 569999999 6999 77554456899999
Q ss_pred EeCCCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCce-eeEEEEEEEEe
Q 004109 106 KDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWMG 162 (773)
Q Consensus 106 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~~ 162 (773)
||.+ +++||++.++|..|..+ .+|++|.+..|... .+.|.+.+.+.
T Consensus 752 ~D~d---~d~iG~~~ipl~~L~~G--------~r~v~L~~~~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 752 MEEG---NKFLGHRIIPINALNSG--------YHHLCLHSESNMPLTMPALFIFLEMK 798 (799)
T ss_dssp EETT---TEEEEEEEEEGGGBCCE--------EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred EEeC---CCccceEeeehhhcCCC--------cEEEeccCCCCCCCCceEEEEEEEEE
Confidence 9986 79999999999999753 47899999887753 47888877653
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.11 E-value=8.6e-11 Score=137.25 Aligned_cols=102 Identities=25% Similarity=0.444 Sum_probs=90.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCeeeeeeeccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDN 434 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~ 434 (773)
+.|.|.|++|++|+++ |..|.+||||++.+ +..+.+|+++++++||.|||.|.|.+... ...|.|+|||+
T Consensus 172 ~~L~V~v~~a~~L~~~---d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~ 248 (674)
T 3pfq_A 172 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDW 248 (674)
T ss_dssp SEEEEEEEEEESCCCC---STTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEEC
T ss_pred ceeeeeeecccccCCC---CcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeec
Confidence 7899999999999988 55689999999998 44568999999999999999999998753 56799999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
|..+ +|++||.+.++++++..+. ...|++|.+
T Consensus 249 d~~~--------~dd~iG~~~i~l~~l~~~~-~~~w~~Lls 280 (674)
T 3pfq_A 249 DLTS--------RNDFMGSLSFGISELQKAG-VDGWFKLLS 280 (674)
T ss_dssp CSSS--------CCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred cccc--------ccccccccccchhhhccCC-cccceeecc
Confidence 9876 8999999999999998765 488999975
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=127.49 Aligned_cols=110 Identities=20% Similarity=0.279 Sum_probs=88.2
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-------eeeeeeeccC-CCCCccccE-EEEE-EeCC-CceEEE
Q 004109 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-------KWVRTRTIID-SPTPKWNEQ-YTWE-VFDP-CTVITI 429 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~-t~~P~wne~-~~f~-v~~~-~~~l~v 429 (773)
.+.|+|+|++|++|+. ..+||||+|.+.+ +++||+++++ ++||+|||+ |.|. |..+ ...|+|
T Consensus 649 ~~~L~V~Visaq~L~~-------~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf 721 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSD-------KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRI 721 (816)
T ss_dssp CEEEEEEEEEEECCCS-------SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEE
T ss_pred ceEEEEEEEEcccCCC-------CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEE
Confidence 4789999999999974 2589999999965 5679999987 599999998 9998 7655 468999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcc-cccEEEEEEEEe
Q 004109 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRFT 494 (773)
Q Consensus 430 ~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~v~l~~~~~ 494 (773)
.|||++ +++||++.|+|+.|..|- +++||.+. .|.. ..+.|.+.+.+.
T Consensus 722 ~V~D~d------------ddfiG~~~ipL~~L~~Gy---R~vpL~~~--~g~~~~~atLfv~i~~~ 770 (816)
T 3qr0_A 722 IVSEEN------------GKFIGHRVMPLDGIKPGY---RHVPLRNE--SNRPLGLASVFAHIVAK 770 (816)
T ss_dssp EEEETT------------SCEEEEEEEESTTCCCEE---EEEEEECT--TSCEEEEEEEEEEEEEE
T ss_pred EEEecC------------CCeeeEEEEEHHHcCCcc---eEEEEeCC--CCCCCCceEEEEEEEEE
Confidence 999973 689999999999998873 57899764 3332 236777777664
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.9e-10 Score=129.23 Aligned_cols=109 Identities=18% Similarity=0.247 Sum_probs=87.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC------eeeeeeeccC-CCCCcccc-EEEEE-EeCC-CceEEEEE
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIID-SPTPKWNE-QYTWE-VFDP-CTVITIGV 431 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~-t~~P~wne-~~~f~-v~~~-~~~l~v~v 431 (773)
..|.|+|++|++|+. ..+||||+|.+.+ .++||+++++ ++||+||| .|.|. |..+ ...|+|+|
T Consensus 725 ~~L~V~Visaq~L~~-------~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V 797 (885)
T 3ohm_B 725 NALRVKVISGQFLSD-------RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAA 797 (885)
T ss_dssp EEEEEEEEEEESCCS-------SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEE
T ss_pred eEEEEEEEEeccCcc-------cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEE
Confidence 489999999999974 2589999999954 2479999987 59999999 69998 6655 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcc-cccEEEEEEEEe
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRFT 494 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~v~l~~~~~ 494 (773)
||+| +++||++.|+|+.|..|- +++||.+. .|.. ..|.|.+.+.+.
T Consensus 798 ~D~d------------ddfiG~~~lpL~~L~~Gy---R~vpL~~~--~g~~l~~atLfv~i~~~ 844 (885)
T 3ohm_B 798 FEEG------------GKFVGHRILPVSAIRSGY---HYVCLRNE--ANQPLCLPALLIYTEAS 844 (885)
T ss_dssp EETT------------TEEEEEEEEETTTCCCEE---EEEEEECT--TSCEEEEEEEEEEEEEE
T ss_pred EcCC------------ccEEeeEEEEHHHcCCCc---eEEEecCC--CCCccCceEEEEEEEEE
Confidence 9974 589999999999998763 46888764 3332 357888888775
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=98.94 E-value=4.8e-09 Score=122.87 Aligned_cols=113 Identities=22% Similarity=0.331 Sum_probs=87.9
Q ss_pred ceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------EEEEee-cccCCCCCccccc-eEEE-EeeCCCCCeEEEEE
Q 004109 198 KLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN------QALRTR-VSASRTINPMWNE-DLMF-VAAEPFEEHLILTV 268 (773)
Q Consensus 198 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~------~~~kT~-~~~~~t~nP~wne-~f~f-~~~~~~~~~l~i~V 268 (773)
..+.|+|+|++|++|+. +.+||||+|.+.+ +++||+ ++++++.||.||| .|.| .+..+.-..|.|.|
T Consensus 676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V 751 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 751 (799)
T ss_dssp TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence 35789999999999985 3589999999942 368999 8876579999999 6999 88766666899999
Q ss_pred EEccCCCCCceeEEEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEE
Q 004109 269 EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICL 332 (773)
Q Consensus 269 ~d~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~ 332 (773)
+|++ +++||++.++|+.|.. ..+|++|.+.. + .....+.|.+.+.+
T Consensus 752 ~D~d----~d~iG~~~ipl~~L~~-------G~r~v~L~~~~---g----~~~~~~~Lfv~i~~ 797 (799)
T 2zkm_X 752 MEEG----NKFLGHRIIPINALNS-------GYHHLCLHSES---N----MPLTMPALFIFLEM 797 (799)
T ss_dssp EETT----TEEEEEEEEEGGGBCC-------EEEEEEEECTT---C----CEEEEEEEEEEEEE
T ss_pred EEeC----CCccceEeeehhhcCC-------CcEEEeccCCC---C----CCCCceEEEEEEEE
Confidence 9985 7999999999999863 35688887652 1 11224666666654
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.74 E-value=5e-08 Score=84.25 Aligned_cols=114 Identities=16% Similarity=0.271 Sum_probs=85.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe----eeee-eccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCC
Q 004109 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY----KGTT-RHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVK 112 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~----~~~T-~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~ 112 (773)
..|+|.+.++.--.........||||.|.+... ..+| .+.++|..|.|||+|.-.+.+ ...|.|.|++...
T Consensus 6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~-- 81 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE-- 81 (126)
T ss_dssp CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT--
T ss_pred ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC--
Confidence 478898877764332223346899999999763 2355 677889999999999999886 6889999997654
Q ss_pred CeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEe
Q 004109 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (773)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (773)
++++.+++.+.+|..+-........-|++|+. .|.|++.+.+.
T Consensus 82 -~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP------~Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 -EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP------QAKVLMSVQYF 124 (126)
T ss_dssp -EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS------SCEEEEEEEEE
T ss_pred -CeeeEEEEEHHHHHhhhccCCCceEEEEeccc------CcEEEEEEEEe
Confidence 89999999999998541001234678999986 48888887654
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-07 Score=81.29 Aligned_cols=108 Identities=13% Similarity=0.245 Sum_probs=83.0
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCee----eee-eeccCCCCCccccEEEEEEeCCCceEEEEEEeCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW----VRT-RTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCH 436 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~----~~T-~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~ 436 (773)
+.|+|.+.++.--..+ ......||||.|.+.... .+| .++++|..|.|||+|.-.|.+ ...|.|.||+.
T Consensus 6 ~flRi~~~~~~~~~~~---~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~-- 79 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQ---AEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRA-- 79 (126)
T ss_dssp CEEEEEEEEEECSSCC---CSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEE--
T ss_pred ccEEeeeccccccccC---CccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcC--
Confidence 5777877666532211 112358999999886543 365 778889999999999999876 68899999975
Q ss_pred CCCCCCCCCCCCCccEEEEEecCccc-----cCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 437 LHGGDKAGGARDSRIGKVRIRLSTLE-----TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 437 ~~~~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
.-++++.+.|++.+|. .+...+.|..|. ..|+|++.+++
T Consensus 80 ----------a~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe--------P~Gkl~~~i~~ 123 (126)
T 1yrk_A 80 ----------AEEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMSVQY 123 (126)
T ss_dssp ----------TTEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEE
T ss_pred ----------CCCeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEE
Confidence 2389999999999996 466788899983 36999999886
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-07 Score=82.29 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=85.2
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCee----eee-eeccCCCCCccccEEEEEEeCCCceEEEEEEeCC
Q 004109 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW----VRT-RTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNC 435 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~----~~T-~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~ 435 (773)
.+.|+|.+.++.-.+.+. -.....||||.|.+.... .+| .++++|..|.|||+|.-.|.+ ...|.|.||+.
T Consensus 9 ~~flRi~l~~~~~~~~~~--~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~- 84 (138)
T 2enj_A 9 SPFLRIGLSNFDCGSCQS--CQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGK- 84 (138)
T ss_dssp CCCEEEEEEEEECCCCCC--SCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECS-
T ss_pred CcceEEEeeccccCCCCC--cccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcC-
Confidence 367888887776433210 012469999999886542 677 777889999999999998876 68899999964
Q ss_pred CCCCCCCCCCCCCCccEEEEEecCccc-----cCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 436 HLHGGDKAGGARDSRIGKVRIRLSTLE-----TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
.-++++.+.|++.+|. .+...+.|..|. ..|+|++.+++
T Consensus 85 -----------a~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe--------P~Gkl~v~i~~ 128 (138)
T 2enj_A 85 -----------NVDLISETTVELYSLAERCRKNNGKTEIWLELK--------PQGRMLMNARY 128 (138)
T ss_dssp -----------SCSCCEEEEEESHHHHHHHHHTTTCEEEEEECB--------SSCEEEEEEEE
T ss_pred -----------CCCeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEE
Confidence 2389999999999996 456778899983 36999999988
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.3e-08 Score=85.17 Aligned_cols=114 Identities=17% Similarity=0.379 Sum_probs=86.4
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCCcEEEEEECCe----eeee-eccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC
Q 004109 38 QYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGNY----KGTT-RHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d-~~~~~dpyv~v~~~~~----~~~T-~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~ 111 (773)
+.|+|.+.+..-.+... .....||||.|.+... ..+| .+.++|..|+|||+|.-.+.+ ...|.|.|++...
T Consensus 10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~- 86 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKNV- 86 (138)
T ss_dssp CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSSC-
T ss_pred cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCCC-
Confidence 46889888876544332 2346899999999763 2566 666779999999999999886 6889999997654
Q ss_pred CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEe
Q 004109 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (773)
++++.++|.+.+|..+-........-|++|+. .|.|++.+.+.
T Consensus 87 --~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP------~Gkl~v~i~~~ 129 (138)
T 2enj_A 87 --DLISETTVELYSLAERCRKNNGKTEIWLELKP------QGRMLMNARYF 129 (138)
T ss_dssp --SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS------SCEEEEEEEEC
T ss_pred --CeeeEEEEEHHHHHhhhccCCCceEEEEeccc------CcEEEEEEEEE
Confidence 89999999999999541000234678999986 48899998775
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=93.31 E-value=0.19 Score=45.43 Aligned_cols=126 Identities=15% Similarity=0.128 Sum_probs=85.6
Q ss_pred ccCceeEEEEEEEEeecCCCCC--CCCCCCcEEEEEE--CC-eeeeeeccCCCCCCeeecEEEEEecC-------CCCce
Q 004109 33 LVEQMQYLYVRVVKAKDLPPKD--VTGSCDPYVEVKM--GN-YKGTTRHFEKKTNPEWNQVFAFSKDR-------IQSSV 100 (773)
Q Consensus 33 ~~~~~~~L~V~v~~a~~L~~~d--~~~~~dpyv~v~~--~~-~~~~T~~~~~~~nP~WnE~f~f~v~~-------~~~~~ 100 (773)
+.+.-+.+.|+|.++. +.+.. ..+..+|..-+.+ -+ +.+.|.+.. +.+|.+|-+-.+.|.. +.+..
T Consensus 13 l~~gEnlfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~ 90 (156)
T 2yrb_A 13 LERGENLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNT 90 (156)
T ss_dssp CCSSCEEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCC
T ss_pred ccCCCcEEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCC
Confidence 4456678999999986 32110 0134577555554 45 455565555 8899999998888742 12567
Q ss_pred EEEEEEeCCCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC-ceeeEEEEEEEEecc
Q 004109 101 LEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWMGTQ 164 (773)
Q Consensus 101 l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~~~ 164 (773)
+.++++.......+.+|.+.|+|.++..+.. ....-.+|....|. ..-|.|.+.+.+..+
T Consensus 91 l~lELhqa~g~~~~tla~~~I~l~~lLe~~~----~i~g~~~L~g~~g~~~~~G~LeywiRL~~P 151 (156)
T 2yrb_A 91 ITLEVHQAYSTEYETIAACQLKFHEILEKSG----RIFCTASLIGTKGDIPNFGTVEYWFRLRVS 151 (156)
T ss_dssp EEEEEEEECSSCEEEEEEEEECCSHHHHCCS----CEEEEEEECBSSSCCTTSEEEEEEEEEEEC
T ss_pred EEEEEEEeeCCCceEEEEEEEEhHHhhCcCC----ceEEEEEEEcCCCCcceEEEEEEEEEEecc
Confidence 9999988754477899999999999996532 23345578777663 357999888877654
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.55 E-value=5.1 Score=38.36 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=32.5
Q ss_pred eeeeeccCCCCCCeeecEEEEEec--CCCCceEEEEEEeCCC
Q 004109 71 KGTTRHFEKKTNPEWNQVFAFSKD--RIQSSVLEVTVKDKDF 110 (773)
Q Consensus 71 ~~~T~~~~~~~nP~WnE~f~f~v~--~~~~~~l~i~V~d~~~ 110 (773)
.++|.+...+.+|.|+|++.+.+. ......|.|++++...
T Consensus 78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 467888888999999999999884 3456889999998654
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=88.41 E-value=3 Score=49.32 Aligned_cols=106 Identities=14% Similarity=0.186 Sum_probs=68.5
Q ss_pred ecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeccCCCCCCeeecEEEEEe--cC-CCCceE
Q 004109 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSK--DR-IQSSVL 101 (773)
Q Consensus 31 ~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~--~~~----~~~T~~~~~~~nP~WnE~f~f~v--~~-~~~~~l 101 (773)
.++.+ .++|+|.++.++... ...+-||.+.+ |++ ..+|+.+....+|.|||.+.|++ .+ +....|
T Consensus 213 ~~~~~---~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L 286 (940)
T 2wxf_A 213 WSLEQ---PFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARL 286 (940)
T ss_dssp TTCCS---EEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEE
T ss_pred hhcCC---ceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEE
Confidence 45544 699999999999754 24577777655 553 33455555577899999999987 33 457899
Q ss_pred EEEEEeCCCC-------------CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEe
Q 004109 102 EVTVKDKDFV-------------KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (773)
Q Consensus 102 ~i~V~d~~~~-------------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (773)
.|.||+.... .+..+|-+.++|-+.. |.-.+|...+.+|-.
T Consensus 287 ~~ti~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~--------------------~~l~~G~~~l~lw~~ 340 (940)
T 2wxf_A 287 CFALYAVVEKAKKARSTKKKSKKADCPIAWANLMLFDYK--------------------DQLKTGERCLYMWPS 340 (940)
T ss_dssp EEEEEEEC----------------CEEEEEEEEESBCTT--------------------SBBCCEEEEEECEEC
T ss_pred EEEEEEecCCccCccccccccccccceEEEEeeeEECCc--------------------CccccCCEEEEEeeC
Confidence 9999995321 1235566555555433 322358888888863
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=85.35 E-value=5.4 Score=47.56 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=69.9
Q ss_pred ecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeccCCCCCCeeecEEEEEe--c-CCCCceE
Q 004109 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSK--D-RIQSSVL 101 (773)
Q Consensus 31 ~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~--~~~----~~~T~~~~~~~nP~WnE~f~f~v--~-~~~~~~l 101 (773)
.++.+ .++|+|.++.++.... ....+-||.+.+ |++ ..+|+.+. ..+|.|||.+.|++ . -+....|
T Consensus 351 w~~~~---~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL 425 (1091)
T 3hhm_A 351 WVINS---ALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARL 425 (1091)
T ss_dssp GGCCS---EEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEE
T ss_pred hhCCC---CEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEE
Confidence 45544 6899999999886543 334577877776 442 33454443 56888999999987 2 3457899
Q ss_pred EEEEEeCCCC-----CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEE
Q 004109 102 EVTVKDKDFV-----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (773)
Q Consensus 102 ~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (773)
.|.||+.... ....+|-+.+.|-+.. |.=.+|...+.+|-
T Consensus 426 ~~tl~~~~~~~~~~~~~~~lg~~n~~lfd~~--------------------~~L~~G~~~L~lW~ 470 (1091)
T 3hhm_A 426 CLSICSVKGRKGAKEEHCPLAWGNINLFDYT--------------------DTLVSGKMALNLWP 470 (1091)
T ss_dssp EEEECCCCCCC-------CCEEEEEESBCTT--------------------CBBCCEEEEEECEE
T ss_pred EEEEEEecCccCcccccceeEEeeeeeEccC--------------------CeEEcCCeEEEeec
Confidence 9999986542 2346677776666543 22225888888884
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=84.73 E-value=4.1 Score=36.73 Aligned_cols=125 Identities=14% Similarity=0.223 Sum_probs=80.3
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCc--EEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC--------CceEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDA--YCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--------CTVIT 428 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dp--yv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--------~~~l~ 428 (773)
+.-+.+.|.|.++. +.+. ....-+..+| ||.+.+-.....+..+....+|.+|-+-.|.|.-. ...+.
T Consensus 15 ~gEnlfEihi~~~~-~~~~-~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~ 92 (156)
T 2yrb_A 15 RGENLFEIHINKVT-FSSE-VLQASGDKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTIT 92 (156)
T ss_dssp SSCEEEEEEEEEEC-CCHH-HHHHHCSSCCEEEEEECSTTCCCEECCCEESSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred CCCcEEEEEEeEEE-EcHH-HHhhccccCCcEEEEEEEeceEeeecccccCCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence 44478889988887 3221 0000122344 55555555554444455599999999888888522 33788
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecCccc-cCCeEEeeEEeEeecCCCc-ccccEEEEEEEEeec
Q 004109 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE-TDRVYTHSYPLLVLYPNGV-KKMGEIHLAVRFTCS 496 (773)
Q Consensus 429 v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~-~~~G~v~l~~~~~~~ 496 (773)
|+++.... +.-+.||.+.|+|.++. ....+....+|.+. .|. ...|.|+..+++..+
T Consensus 93 lELhqa~g---------~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~--~g~~~~~G~LeywiRL~~P 151 (156)
T 2yrb_A 93 LEVHQAYS---------TEYETIAACQLKFHEILEKSGRIFCTASLIGT--KGDIPNFGTVEYWFRLRVS 151 (156)
T ss_dssp EEEEEECS---------SCEEEEEEEEECCSHHHHCCSCEEEEEEECBS--SSCCTTSEEEEEEEEEEEC
T ss_pred EEEEEeeC---------CCceEEEEEEEEhHHhhCcCCceEEEEEEEcC--CCCcceEEEEEEEEEEecc
Confidence 88887532 14579999999999985 44446667788664 332 356999988887543
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=81.61 E-value=4.2 Score=48.11 Aligned_cols=94 Identities=12% Similarity=0.247 Sum_probs=62.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCee----eeeeeccCCCCCccccEEEEEEe--C-C-CceEEEEE
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKW----VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGV 431 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v 431 (773)
..++|.|..+.++... ..++-||.+.+ |++. ..|..+.-..+|.|||.++|++. + | ...|.|.|
T Consensus 217 ~~f~i~i~~~~~~~~~------~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti 290 (940)
T 2wxf_A 217 QPFSIELIEGRKVNAD------ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFAL 290 (940)
T ss_dssp SEEEEEEEEEECCCC---------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEE
T ss_pred CceEEEEEEecccCCC------CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEE
Confidence 6899999999998642 34778888765 7654 35555555778999999999887 3 3 78999999
Q ss_pred EeCCCC--CC-CCC-CCCCCCCccEEEEEecCcc
Q 004109 432 FDNCHL--HG-GDK-AGGARDSRIGKVRIRLSTL 461 (773)
Q Consensus 432 ~d~~~~--~~-~~~-~~~~~d~~lG~~~i~l~~l 461 (773)
|+.... +. +.+ .....+..||.+.+++-+-
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~ 324 (940)
T 2wxf_A 291 YAVVEKAKKARSTKKKSKKADCPIAWANLMLFDY 324 (940)
T ss_dssp EEEC----------------CEEEEEEEEESBCT
T ss_pred EEecCCccCccccccccccccceEEEEeeeEECC
Confidence 996321 10 000 0011356999999998764
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=81.59 E-value=5.5 Score=47.54 Aligned_cols=91 Identities=20% Similarity=0.334 Sum_probs=61.9
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCee----eeeeeccCCCCCccccEEEEEEe--C-C-CceEEEEE
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKW----VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGV 431 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v 431 (773)
..++|.|+.+.++.. +.....+-||.+.+ |++. .+|+.+. ..+|.|||.++|++. + | .+.|.|.|
T Consensus 355 ~~f~v~i~~~~~~n~----~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl 429 (1091)
T 3hhm_A 355 SALRIKILCATYVNV----NIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSI 429 (1091)
T ss_dssp SEEEEEEEEESCCCC----CCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEE
T ss_pred CCEEEEEEEecCCCC----CccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEE
Confidence 689999999998864 22234678888876 6654 3444333 457889999999887 3 3 78999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCcc
Q 004109 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l 461 (773)
|+..... + +.+.+..||.+.++|-+-
T Consensus 430 ~~~~~~~-~---~~~~~~~lg~~n~~lfd~ 455 (1091)
T 3hhm_A 430 CSVKGRK-G---AKEEHCPLAWGNINLFDY 455 (1091)
T ss_dssp CCCCCCC-----------CCEEEEEESBCT
T ss_pred EEecCcc-C---cccccceeEEeeeeeEcc
Confidence 9865421 0 112457899999999764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 773 | ||||
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 3e-25 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-14 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-09 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 2e-23 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 1e-12 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 3e-10 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 3e-23 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 1e-08 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 9e-22 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-15 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-11 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 2e-21 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 3e-14 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 3e-12 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 2e-21 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-15 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-15 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 1e-20 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 3e-10 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 5e-07 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 1e-19 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 8e-14 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 8e-06 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 6e-19 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 4e-12 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 1e-10 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 7e-19 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 4e-12 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 1e-18 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 6e-12 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 8e-04 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 6e-16 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 7e-09 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 7e-16 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 6e-12 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 7e-04 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 8e-16 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 2e-08 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 4e-06 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 6e-15 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 1e-07 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 7e-04 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 9e-14 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 5e-12 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 1e-04 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 1e-13 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 3e-05 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 5e-13 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 5e-11 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 9e-10 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 1e-11 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 3e-07 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 4e-05 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 6e-08 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 4e-05 |
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 99.4 bits (247), Expect = 3e-25
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI 96
M L V V KAK ++ + YV +K+ N K TT + + P W Q F F +R+
Sbjct: 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 56
Query: 97 QSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR---KGDKVRG 153
+ V V +K + D +G V L I + + +W L+ + ++ G
Sbjct: 57 DLGLT-VEVWNKGLIWDTMVGTVWIPLRTIRQ---SNEEGPGEWLTLDSQAIMADSEICG 112
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 68.2 bits (166), Expect = 2e-14
Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 11/135 (8%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
L V V +A+ +K YV ++ N T R P W +D
Sbjct: 3 LLCVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIA--VRGSQPSWEQD-FMFEINRL 56
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDT 320
+ L + V ++ D ++G IPL+ R ++ W L+ ++ + T
Sbjct: 57 DLGLTVEVWNK-GLIWDTMVGTVWIPLR--TIRQSNEEGPGEWLTLDSQAIMADSEICGT 113
Query: 321 KFAS--RIHMRICLE 333
K + RI + E
Sbjct: 114 KDPTFHRILLDAHFE 128
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.4 bits (130), Expect = 2e-09
Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 21/145 (14%)
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEV 420
+ +L +G+ A+ + Y K T + P W + + +E+
Sbjct: 1 MSLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTI-AVRGSQPSWEQDFMFEI 53
Query: 421 FDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL--ETDRVYTHSYPLLVLYP 478
+T+ V++ D+ +G V I L T+ + L
Sbjct: 54 NRLDLGLTVEVWNKGL---------IWDTMVGTVWIPLRTIRQSNEEGPGEWLT---LDS 101
Query: 479 NGVKKMGEIHLAVRFTCSSLLNMMH 503
+ EI T +L H
Sbjct: 102 QAIMADSEICGTKDPTFHRILLDAH 126
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.4 bits (234), Expect = 2e-23
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 40 LYVRVVKAKDLPP---KDVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSK 93
V V++A + D+ + DPYVE+ + + + TRHF NP WN+ F F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 94 DRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRG 153
D Q +VLE+T+ D ++V D+ +G F ++ + + + +
Sbjct: 65 DPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----VPFIFNQVTEMVLEM 119
Query: 154 EL 155
L
Sbjct: 120 SL 121
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.2 bits (153), Expect = 1e-12
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 20/142 (14%)
Query: 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQY 416
S + +L A + D T D Y RTR + P WNE +
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60
Query: 417 TWEVFDPCT-VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475
+ + V+ I + D ++ D +G +S+++ +
Sbjct: 61 EFILDPNQENVLEITLMDANYV---------MDETLGTATFTVSSMKVGEKKEVPFIF-- 109
Query: 476 LYPNGVKKMGEIHLAVRFTCSS 497
N V + + +++ SS
Sbjct: 110 ---NQVTE-MVLEMSLEV-ASS 126
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (135), Expect = 3e-10
Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 10/119 (8%)
Query: 202 LRVNVIEAQDLQPT---DKGRFPEVYVKAQLGNQAL--RTRVSASRTINPMWNEDLMFVA 256
V V+ A + D P+ YV+ + + + INP+WNE F+
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 257 AEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGE 315
E L +T+ D DE LG + + + + + E
Sbjct: 65 DPNQENVLEITLMDA-NYVMDETLGTATFTV----SSMKVGEKKEVPFIFNQVTEMVLE 118
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.3 bits (231), Expect = 3e-23
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 10/128 (7%)
Query: 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSK 93
V+ + L V+V+KA DL D +G DP+ +++GN + T K NPEWN+VF F
Sbjct: 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61
Query: 94 DRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KV 151
I + EVTV D+D DF+G+V L I P Y L+++ +
Sbjct: 62 KDIHDVL-EVTVFDEDGDKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAF 113
Query: 152 RGELMLAV 159
+G + L +
Sbjct: 114 KGVIYLEM 121
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (123), Expect = 1e-08
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
L+V V++A DL D + + +LGN L+T + +NP WN+ F +
Sbjct: 7 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTV-YKNLNPEWNKVFTFPIKDIH 65
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDT 320
+ L +TV D + LGK IPL + + Y L+ K +
Sbjct: 66 -DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPN------CYVLKN-------KDLEQ 111
Query: 321 KFASRIHMRI 330
F I++ +
Sbjct: 112 AFKGVIYLEM 121
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.4 bits (221), Expect = 9e-22
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT---- 81
+ +D + L V ++ AKDLP ++ +PYV++ + KT
Sbjct: 4 SIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT 61
Query: 82 -NPEWNQVFAF---SKDRIQSSVLEVTVKDKDFV---KDDFMGRVLFDLNEIPKRVPPDS 134
P+WNQ F + + + +LE+T+ D+ V + +F+G +L +L
Sbjct: 62 LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA------LL 115
Query: 135 PLAPQWYRLE 144
P WY+L+
Sbjct: 116 DDEPHWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.3 bits (174), Expect = 2e-15
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 22/126 (17%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASRTINP 246
KLW+ L V ++ A+DL + GR YVK RT+ +T+ P
Sbjct: 6 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKT-VKKTLEP 64
Query: 247 MWNEDLMFVAAEPFEEH---LILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
WN+ ++ E L +T+ + RV + E LG+ +I L+ +
Sbjct: 65 KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-----P 119
Query: 302 RWYNLE 307
WY L+
Sbjct: 120 HWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.7 bits (144), Expect = 2e-11
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 19/121 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVA-----KYGQKWVRTRTIIDSPTPKWNEQY 416
L + IL A+ L + + Y + + RT+T+ + PKWN+ +
Sbjct: 14 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 70
Query: 417 TWEVFDPCT----VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472
+ ++ I ++D + +G++ I L T D H Y
Sbjct: 71 IYSPVHRREFRERMLEITLWDQ------ARVREEESEFLGEILIELETALLDDE-PHWYK 123
Query: 473 L 473
L
Sbjct: 124 L 124
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 88.2 bits (218), Expect = 2e-21
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG-----TTRHFEKKTNPEWNQVFAFS 92
+ L V V AK+L P D G DPYV++K+ T+ + NPEWN+ F F
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 93 -KDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147
K+ + L V + D D ++DFMG + F ++E+ K W++L ++
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 125
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 67.8 bits (165), Expect = 3e-14
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 18/136 (13%)
Query: 190 RSKVYLSPKLW--YLRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASR 242
R ++Y+ + L V V +A++L P D + YVK +L +T+
Sbjct: 3 RGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKT-IKC 61
Query: 243 TINPMWNEDLMFVAAEPFEEH-LILTVEDRVAPNKDEVLGKCMIPLQYVDK-RLDHKPVN 300
++NP WNE F E ++ L + + D ++++ +G + + K +D
Sbjct: 62 SLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG---- 117
Query: 301 TRWYNLEKHIVVEGEK 316
W+ L EGE
Sbjct: 118 --WFKLLSQ--EEGEY 129
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.4 bits (151), Expect = 3e-12
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQY 416
VL + + +A+ L+PM D G +D Y K + +T+TI S P+WNE +
Sbjct: 15 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 71
Query: 417 TWEVFDP--CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
+++ + +++ ++D +R+ +G + +S L+ V + LL
Sbjct: 72 RFQLKESDKDRRLSVEIWDWDLT--------SRNDFMGSLSFGISELQKAGV-DGWFKLL 122
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 88.3 bits (218), Expect = 2e-21
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG-TTRHFEKKTNPEWNQVFAFSKDRIQS 98
L V +V AK L D + DPYV++ + T PEWN+ F F+ +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GT 70
Query: 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELML 157
+ L+ + DKD +DD +G L + + + P Y + K ++ +GE+ +
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEPVFV----EGSIPPTAYNV--VKDEEYKGEIWV 124
Query: 158 AV 159
A+
Sbjct: 125 AL 126
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 72.5 bits (177), Expect = 1e-15
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L V ++ A+ L+ D + YV+ Q ++ V+ P WNE +F +E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-T 70
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGE 315
L + D+ +D+ +G+ IPL+ V + YN+ K +GE
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEPV---FVEGSIPPTAYNVVKDEEYKGE 121
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 72.1 bits (176), Expect = 1e-15
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 15/138 (10%)
Query: 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTII-DSPTPKWNEQY 416
G LE+ +++A+GL D D Y + ++ TP+WNE +
Sbjct: 6 SGPHGTLEVVLVSAKGLED---ADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETF 62
Query: 417 TWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476
+ V + T + +FD D +G+ I L + + + +V
Sbjct: 63 IFTVSEGTTELKAKIFDKDVGT--------EDDAVGEATIPLEPVFVEGSIPPTAYNVV- 113
Query: 477 YPNGVKKMGEIHLAVRFT 494
+ GEI +A+ F
Sbjct: 114 --KDEEYKGEIWVALSFK 129
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 86.5 bits (213), Expect = 1e-20
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 28/144 (19%)
Query: 22 ITGD-KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM------------- 67
ITG+ +L YD + L + +++A++L P+D G DP+V+V +
Sbjct: 5 ITGEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNA 60
Query: 68 -GNYKGTTRHFEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKDFV-KDDFMGRVLFD 122
YK T++ +K NPEWNQ + S +++ LEVTV D D +DF+G VL D
Sbjct: 61 SAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLID 120
Query: 123 LNEIPKRVPPDSPLAPQWYRLEDR 146
L+ P+WY L+++
Sbjct: 121 LSSTSHLDN-----TPRWYPLKEQ 139
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.8 bits (136), Expect = 3e-10
Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 26/141 (18%)
Query: 189 IRSKVYLSPKLWY----LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS--- 241
I ++ L + Y L +++++A++L P D + + +VK L + V +
Sbjct: 5 ITGEIQLQ--INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASA 62
Query: 242 ----------RTINPMWNEDLMFV---AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQ 288
+++NP WN+ +++ + ++ L +TV D + ++ LG+ +I L
Sbjct: 63 EYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS 122
Query: 289 YVDKRLDHKPVNTRWYNLEKH 309
+ RWY L++
Sbjct: 123 STSHLDNT----PRWYPLKEQ 139
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.6 bits (112), Expect = 5e-07
Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 29/133 (21%)
Query: 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCV--------------AKYGQKWVRTRTII 405
+G L + IL A+ L+P D G +D + + RT+ +
Sbjct: 16 DLGNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ 72
Query: 406 DSPTPKWNEQYTWEVFDPCT----VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461
S P+WN+ ++ + + V+D + +G+V I LS+
Sbjct: 73 KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS--------SNDFLGEVLIDLSST 124
Query: 462 ETDRVYTHSYPLL 474
YPL
Sbjct: 125 SHLDNTPRWYPLK 137
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 83.6 bits (206), Expect = 1e-19
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAF--S 92
L V V+KA+ LP DV+G DPYV+V + + K T + N +N++F F
Sbjct: 17 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 76
Query: 93 KDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVP--------PDSPLAPQWYRL 143
+ ++ +E V D + +++ +GR++ P +A +W+ L
Sbjct: 77 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWHML 135
Query: 144 ED 145
D
Sbjct: 136 CD 137
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 67.0 bits (163), Expect = 8e-14
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 26/139 (18%)
Query: 190 RSKVYLSPKLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA-----LRTRV 238
R ++ +S L Y L V V++A+ L +D + YVK L + +T V
Sbjct: 1 RGELLVS--LCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHV 58
Query: 239 SASRTINPMWNEDLMF--VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH 296
T N ++NE +F E + V D +++EV+G+ ++ H
Sbjct: 59 K-KCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGH 117
Query: 297 ---------KPVNTRWYNL 306
+ + +W+ L
Sbjct: 118 WKEICDFPRRQI-AKWHML 135
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.9 bits (103), Expect = 8e-06
Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 21/124 (16%)
Query: 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW-----VRTRTIIDSPTPKWN 413
S+ L + +L A+ L D G +D Y +T +P +N
Sbjct: 12 STTNTLTVVVLKARHLPKS---DVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFN 68
Query: 414 EQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHS 470
E + +++ + V D+ R+ IG++ + + H
Sbjct: 69 ELFVFDIPCESLEEISVEFLVLDSERGS--------RNEVIGRLVLGAT--AEGSGGGHW 118
Query: 471 YPLL 474
+
Sbjct: 119 KEIC 122
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 81.7 bits (201), Expect = 6e-19
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTN 82
+ + YD Q L V +++A +LP D+ G+ DPYV+V + K T+ K N
Sbjct: 24 QYSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 83 PEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQ 139
P +N+ F F + L + V D D F K D +G +N + + +
Sbjct: 82 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV-----DFGHVTEE 136
Query: 140 WYRLE 144
W L+
Sbjct: 137 WRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.1 bits (150), Expect = 4e-12
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 184 EGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSA 240
E L ++ + + L V +I+A +L D G + YVK L + T+V
Sbjct: 18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV-H 76
Query: 241 SRTINPMWNEDLMF--VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKP 298
+T+NP++NE F +E + L++ V D +K +++G+ +P+ +D
Sbjct: 77 RKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGH 132
Query: 299 VNTRWYNLE 307
V W +L+
Sbjct: 133 VTEEWRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.8 bits (139), Expect = 1e-10
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYC---VAKYGQKWVRTRTIIDSPTPKWNEQYTW 418
L +GI+ A L + D GT+D Y + +K T+ + P +NEQ+T+
Sbjct: 34 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Query: 419 EVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
+V + D ++ IG+ ++ ++T++ V L
Sbjct: 91 KVPYSELGGKT-----LVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.3 bits (200), Expect = 7e-19
Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 6/123 (4%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSS 99
L + V+ AK K PYVEV + T +P+W Q +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKL 67
Query: 100 VLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE---DRKGDKVRGELM 156
V D +G D+ E K + L L+ D++ + G+L
Sbjct: 68 HFRVWSHQT-LKSDVLLGTAALDIYETLK--SNNMKLEEVVVTLQLGGDKEPTETIGDLS 124
Query: 157 LAV 159
+ +
Sbjct: 125 ICL 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (150), Expect = 4e-12
Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 11/133 (8%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L++ VI A+ + P YV+ + Q+ +T + T +P W + L + +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEK-CNNTNSPKWKQPLTVIVTPVSK 66
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTK 321
H + + D +LG + + K + K + + + G+K+
Sbjct: 67 LHFRVWSHQTL--KSDVLLGTAALDIYETLKSNNMK-----LEEVVVTLQLGGDKEPTET 119
Query: 322 FASRIHMRICLEG 334
+ ICL+G
Sbjct: 120 ---IGDLSICLDG 129
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 81.4 bits (200), Expect = 1e-18
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 21/140 (15%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG-----TTRHFEKKTNPEWNQVFA 90
L V +++AK+L DV G DPYV++ + T + NP +N+ F+
Sbjct: 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS 82
Query: 91 F--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRV--------PPDSPLAPQ 139
F ++IQ + VTV D D K+D +G+V N + P P+A Q
Sbjct: 83 FEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-Q 141
Query: 140 WYRLEDRKGDKVRGELMLAV 159
W+ L+ + + MLAV
Sbjct: 142 WHTLQVEE----EVDAMLAV 157
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.1 bits (150), Expect = 6e-12
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 18/149 (12%)
Query: 183 IEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTR 237
+E L +I + P L V ++EA++L+ D G + YVK L + +T
Sbjct: 8 LEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTT 67
Query: 238 VSASRTINPMWNEDLMFVAAEPFEEH--LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLD 295
+ T+NP +NE F + +++TV D K++ +GK + L
Sbjct: 68 IKK-NTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELR 126
Query: 296 H---------KPVNTRWYNLEKHIVVEGE 315
H +P+ +W+ L+ V+
Sbjct: 127 HWSDMLANPRRPI-AQWHTLQVEEEVDAM 154
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.6 bits (89), Expect = 8e-04
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 15/121 (12%)
Query: 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWN 413
+ G L + IL A+ L M D G +D Y Q K +T ++ P +N
Sbjct: 22 PTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN 78
Query: 414 EQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473
E +++EV + D ++ IGKV + + T H +
Sbjct: 79 ESFSFEVPFEQI-----QKVQVVVTVLDYDKIGKNDAIGKVFVGYN--STGAELRHWSDM 131
Query: 474 L 474
L
Sbjct: 132 L 132
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.3 bits (179), Expect = 6e-16
Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 18/129 (13%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-----KGTTRHFEKKTNPEWNQVFA 90
L V ++KA +L D+TG DPYV+ + + K T + NP +N+
Sbjct: 18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77
Query: 91 F--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRV---------PPDSPLAP 138
F + + +++ L + V D D ++ +G P P+
Sbjct: 78 FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE- 136
Query: 139 QWYRLEDRK 147
W++L + K
Sbjct: 137 HWHQLVEEK 145
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.9 bits (126), Expect = 7e-09
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTI----NPMWNEDL 252
P L V +I+A +L+ D F + YVKA L ++ R + + NP +NE L
Sbjct: 17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEAL 76
Query: 253 MF--VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKR-LDH---------KPVN 300
+F L + V D +EV+G C + + D +H KPV
Sbjct: 77 VFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPV- 135
Query: 301 TRWYNL 306
W+ L
Sbjct: 136 EHWHQL 141
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.9 bits (178), Expect = 7e-16
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAF--S 92
L V +++ L D G DP+V++ + K T+ +K NPE+N+ F +
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76
Query: 93 KDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV 151
+ L+++V D D +D++G ++ +R+ WY K K+
Sbjct: 77 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERL-------KHWYECLKNKDKKI 129
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.4 bits (148), Expect = 6e-12
Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 16/130 (12%)
Query: 190 RSKVYLS----PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTI- 244
R K+ +S + L V +I L D + + +VK L + ++
Sbjct: 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 60
Query: 245 ---NPMWNEDLMF--VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPV 299
NP +NE+ + ++ ++ L ++V D ++ +G C + + +RL H
Sbjct: 61 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKH--- 117
Query: 300 NTRWYNLEKH 309
WY K+
Sbjct: 118 ---WYECLKN 124
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.3 bits (88), Expect = 7e-04
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 15/123 (12%)
Query: 357 WKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVA-----KYGQKWVRTRTIIDSPTPK 411
+ + G L +GI+ L M D G +D + + +T+ + P+
Sbjct: 10 YSTQQGGLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 66
Query: 412 WNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSY 471
+NE++ +++ + + D G + IG ++ H Y
Sbjct: 67 FNEEFFYDIKHS-----DLAKKSLDISVWDYDIGKSNDYIGGCQL--GISAKGERLKHWY 119
Query: 472 PLL 474
L
Sbjct: 120 ECL 122
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.8 bits (178), Expect = 8e-16
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 19/137 (13%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTG-SCDPYVEVKM---GNYKGTTR 75
G + + Y+ + + V + +A+ LP D + DPY+++ + +K TR
Sbjct: 9 GTL---FFSLEYN--FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTR 63
Query: 76 HFEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVP 131
K +P +++ F F +IQ L T+ D F +DD +G VL L+ I
Sbjct: 64 VLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI----- 118
Query: 132 PDSPLAPQWYRLEDRKG 148
+ E G
Sbjct: 119 -ELSEGKMLMNREIISG 134
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (123), Expect = 2e-08
Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 181 TGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDK-GRFPEVYVKAQL---GNQALRT 236
+G GL + + + + VN+ EA+ L D+ + Y+K + ++T
Sbjct: 3 SGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKT 62
Query: 237 RVSASRTINPMWNEDLMFV---AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKR 293
RV +T++P ++E F + E L T+ ++D+++G+ +IPL ++
Sbjct: 63 RV-LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE-- 119
Query: 294 LDHKPVNTRWYNLE 307
L + N E
Sbjct: 120 LSEGKM---LMNRE 130
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (106), Expect = 4e-06
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 17/108 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIIDSPTPKWNEQYTW 418
+ I A+GL M + T+D Y + V+TR + + P ++E +T+
Sbjct: 22 KAFVVNIKEARGLPAMD--EQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79
Query: 419 EVFDP----CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462
+ + RD IG+V I LS +E
Sbjct: 80 YGIPYTQIQELALHFTILSFDRFS--------RDDIIGEVLIPLSGIE 119
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 70.0 bits (170), Expect = 6e-15
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 14/132 (10%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVE---VKMGNYKGTTRH 76
G+I Y L VR+++A DLP KD G DPYV+ + K T+
Sbjct: 5 GRI---SFALRYL--YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKV 59
Query: 77 FEKKTNPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPD 133
K NP +N+ F F + L +V D D F + D +G+V+ D PPD
Sbjct: 60 HRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD 119
Query: 134 SPLAPQWYRLED 145
PL W + +
Sbjct: 120 RPL---WRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.2 bits (116), Expect = 1e-07
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMWNEDLMFV--A 256
L V +++A DL D F + YVK L + +T+V +T+NP++NE F
Sbjct: 20 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVH-RKTLNPIFNETFQFSVPL 78
Query: 257 AEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEK 308
AE + L +V D ++ +++G+ ++ + + + P W ++ +
Sbjct: 79 AELAQRKLHFSVYDFDRFSRHDLIGQVVLDN--LLELAEQPPDRPLWRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.4 bits (88), Expect = 7e-04
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 11/120 (9%)
Query: 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTW 418
L + IL A L + + +K +T+ + P +NE + +
Sbjct: 15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 74
Query: 419 EVFDPCTVITIGVFDNCHLHG--GDKAGGARDSRIGKVRIRLSTLETDRVY--THSYPLL 474
V LH D +R IG+V + ++ +L
Sbjct: 75 SVPLA-------ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.7 bits (162), Expect = 9e-14
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 17/123 (13%)
Query: 38 QYLYVRVVKAKDLPP--KDVTGSCDPYVEVKMGNYKGTTRHFEKKT------NPEWNQVF 89
+ L VR++ + LP K+ DP V V++ T + NP W+ F
Sbjct: 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63
Query: 90 AFSKDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148
F +++ V+D D K+DF+G+ N + + + L + G
Sbjct: 64 EFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNG 115
Query: 149 DKV 151
D+
Sbjct: 116 DQH 118
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.7 bits (149), Expect = 5e-12
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 202 LRVNVIEAQDLQPT--DKGRFPEVYVKAQ-----LGNQALRTRVSASRTINPMWNEDLMF 254
LRV +I Q L +K + V + + +T V + NP W+ + F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 255 VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTR 302
P + VED + +K++ +G+ IP + + H + ++
Sbjct: 66 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSK 113
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 17/117 (14%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSP-TPKWNEQYT 417
L + I++ Q L P K+ D + + +T I ++ P+W+ ++
Sbjct: 6 LRVRIISGQQL-PKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64
Query: 418 WEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
+EV P D +++ IG+ I + + LL
Sbjct: 65 FEVTVPD-------LALVRFMVEDYDSSSKNDFIGQSTIP---WNSLKQGYRHVHLL 111
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.3 bits (161), Expect = 1e-13
Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 17/122 (13%)
Query: 45 VKAKDL-PPKDVTGSCDPYVEVKMGNY-----KGTTRHFEKKTNPEWNQVFAFSKDRIQS 98
+ +L + + P+ VKM T + PEW F +
Sbjct: 9 FNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGR- 67
Query: 99 SVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLA 158
V+++ + D M V ++ + +R ++ A W L+ + ++++
Sbjct: 68 -VIQIVLMRAAE---DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP------QAKVLMC 117
Query: 159 VW 160
V
Sbjct: 118 VQ 119
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.7 bits (97), Expect = 3e-05
Identities = 10/120 (8%), Positives = 30/120 (25%), Gaps = 21/120 (17%)
Query: 379 TKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFD 433
+ + +C K + + P+W + + VI I +
Sbjct: 17 LQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI-YEGRVIQIVLMR 75
Query: 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493
+ +G + + + L + ++ + V++
Sbjct: 76 AAEDPMSEV-------TVGVSVLAERCKKNNGKAEFWLDL--------QPQAKVLMCVQY 120
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 64.5 bits (156), Expect = 5e-13
Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 22/135 (16%)
Query: 39 YLYVRVVKAKDLPPKD-----------VTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWN 86
L +++ +A L P T DPY+ + + + + G T +K +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 87 QVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146
F + L V DDF+ E+ + S W LE
Sbjct: 67 DEFVTDVCNGRKIELAVFHDAP-IGYDDFVANCTIQFEELLQN---GSRHFEDWIDLEP- 121
Query: 147 KGDKVRGELMLAVWM 161
G++ + + +
Sbjct: 122 -----EGKVYVIIDL 131
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 58.7 bits (141), Expect = 5e-11
Identities = 20/145 (13%), Positives = 50/145 (34%), Gaps = 29/145 (20%)
Query: 201 YLRVNVIEAQDLQPTDKGR-----------FPEVYVKAQLGNQALRTRVSASRTINPMWN 249
L++ + EA L+PT + Y+ + + + + +T +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 250 EDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309
++ + + L + + + D+ + C I + + + W +LE
Sbjct: 67 DEFVTDVCNGRKIELAVFHDAPI--GYDDFVANCTIQFEELLQN--GSRHFEDWIDLEPE 122
Query: 310 IVVEGEKKKDTKFASRIHMRICLEG 334
++++ I L G
Sbjct: 123 --------------GKVYVIIDLSG 133
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 55.3 bits (132), Expect = 9e-10
Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 28/147 (19%)
Query: 362 GVLELGILNAQGLMPMKT--------KDGRGTTDAYCVAKYG-QKWVRTRTIIDSPTPKW 412
G+L++ I A L P + D Y + +T T + +P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 413 NEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL--ETDRVYTHS 470
++++ +V + I + VF + + D + I+ L R +
Sbjct: 66 HDEFVTDVCNGRK-IELAVFHDAPIGYDD--------FVANCTIQFEELLQNGSRHFEDW 116
Query: 471 YPLLVLYPNGVKKMGEIHLAVRFTCSS 497
L + G++++ + + SS
Sbjct: 117 IDL--------EPEGKVYVIIDLSGSS 135
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.7 bits (146), Expect = 1e-11
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 17/129 (13%)
Query: 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG----TTRHFEKKT 81
YD Q L+V ++A + G CD YV+ + N G T +++
Sbjct: 16 HYCLDYD--CQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQL 70
Query: 82 NPEWNQVFAFSKDRIQSSVLEVTVKDKDFVK---DDFMGRVLFDLNEIPKRVPPDSPLAP 138
+ W + + +T+ + + G + L+ +
Sbjct: 71 HTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA----- 125
Query: 139 QWYRLEDRK 147
QW L+
Sbjct: 126 QWGELKTSG 134
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (113), Expect = 3e-07
Identities = 17/116 (14%), Positives = 26/116 (22%), Gaps = 15/116 (12%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY----GQKWVRTRTIIDSPTPKWNEQYT 417
L + L A + G D Y G +T W E
Sbjct: 26 AELFVTRLEAVTS------NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLV 79
Query: 418 WEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473
+ + L +R S G++R+ L L
Sbjct: 80 LPLAEEELPTAT-----LTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (97), Expect = 4e-05
Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 14/132 (10%)
Query: 184 EGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA----LRTRVS 239
+ + + L V +EA + + YV+ + N+ +T +
Sbjct: 10 NQAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTAL- 65
Query: 240 ASRTINPMWNEDL--MFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHK 297
R ++ W E L E L LT+ ++ V G+ + L
Sbjct: 66 KKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGL----DGTSVP 121
Query: 298 PVNTRWYNLEKH 309
+W L+
Sbjct: 122 LGAAQWGELKTS 133
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (118), Expect = 6e-08
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 25/121 (20%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM------GNYKGTTRHFEKKT--NPEWNQ--VF 89
L + V+ + L + V YVEV++ + T+ NP W +
Sbjct: 3 LSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 90 AFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD 149
+ + L V V ++ + F+G + +N + L
Sbjct: 59 FEKILMPELASLRVAVMEEG---NKFLGHRIIPINAL--------NSGYHHLCLHSESNM 107
Query: 150 K 150
Sbjct: 108 P 108
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (97), Expect = 4e-05
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVK---AQLGNQALRTRVSASRTINPMWNEDLMF--VA 256
L + VI Q L + EV + + ++ +INP+W E+
Sbjct: 3 LSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKI 62
Query: 257 AEPFEEHLILTVEDRVAPNKDEVLGKCMIPL 287
P L + V + ++ LG +IP+
Sbjct: 63 LMPELASLRVAVME----EGNKFLGHRIIPI 89
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 773 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.86 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.84 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.81 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.81 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.78 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.78 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.77 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.77 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.76 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.76 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.75 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.75 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.74 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.74 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.74 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.73 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.73 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.73 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.71 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.71 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.7 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.7 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.7 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.67 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.67 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.67 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.66 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.66 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.65 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.64 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.64 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.64 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.63 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.63 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.59 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.55 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.55 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.52 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.41 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.24 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 94.46 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 92.11 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=5.8e-22 Score=177.97 Aligned_cols=123 Identities=25% Similarity=0.458 Sum_probs=108.3
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~ 438 (773)
+++|.|+|+|++|+||+.+ +..|.+||||+++++++.++|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 3 ~~~G~L~V~v~~A~~L~~~---d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~ 79 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK 79 (126)
T ss_dssp CCSEEEEEEEEEEESCCCS---SSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred CccEEEEEEEEEeECCCCC---CCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCc
Confidence 4679999999999999987 5568899999999999999999999999999999999999998899999999998876
Q ss_pred CCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEee
Q 004109 439 GGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 439 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
+|++||++.|+|+++..+. .+|++|......+. ..|+|+|++++.+
T Consensus 80 --------~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~-~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 80 --------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQA-FKGVIYLEMDLIY 125 (126)
T ss_dssp --------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSC-CSSEEEEEEEEEE
T ss_pred --------CcceEEEEEEEHHHCCCCC--ceEEEccccCCCCc-eeEEEEEEEEEEE
Confidence 7899999999999998776 57999876554443 3599999998853
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=3.5e-21 Score=172.82 Aligned_cols=120 Identities=36% Similarity=0.565 Sum_probs=106.2
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CC
Q 004109 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KD 113 (773)
Q Consensus 35 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d 113 (773)
+++|+|+|+|++|+||+..+..|++||||++++++++++|++++++.||.|||+|.|.+.++ ...|.|+|||++.. +|
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~~d 81 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDKPP 81 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTEEE
T ss_pred CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCCcCc
Confidence 57899999999999999999899999999999999999999999999999999999999875 47899999999988 88
Q ss_pred eeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC-ceeeEEEEEEEEe
Q 004109 114 DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWMG 162 (773)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~ 162 (773)
++||++.++|.++..+ ..+|+.|....++ ...|+|++++.+.
T Consensus 82 ~~lG~~~i~l~~l~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 82 DFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp EECCBCEEEGGGCCSS-------CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred ceEEEEEEEHHHCCCC-------CceEEEccccCCCCceeEEEEEEEEEE
Confidence 9999999999998654 3479988776533 4569999998764
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.81 E-value=6.9e-20 Score=166.63 Aligned_cols=124 Identities=23% Similarity=0.348 Sum_probs=106.6
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeecc-CCCCCccccEEEEEEeCCCceEEEEEEeCCC
Q 004109 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTII-DSPTPKWNEQYTWEVFDPCTVITIGVFDNCH 436 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~-~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~ 436 (773)
..+.|.|+|+|++|+||+.. +..|++||||+++++++..+|++++ ++.||.|||.|.|.+.++...|+|+|||+|.
T Consensus 6 ~~p~G~L~V~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~ 82 (136)
T d1wfja_ 6 SGPHGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV 82 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSC---CSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred CCCcEEEEEEEEEeeCCCCC---CCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecC
Confidence 45669999999999999987 5568899999999999999999987 5899999999999999888889999999998
Q ss_pred CCCCCCCCCCCCCccEEEEEecCcccc-CCeEEeeEEeEeecCCCcccccEEEEEEEEeec
Q 004109 437 LHGGDKAGGARDSRIGKVRIRLSTLET-DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (773)
Q Consensus 437 ~~~~~~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~ 496 (773)
++ +|++||++.|+|.++.. +.....||++.. ..+..|+|++.++|.|.
T Consensus 83 ~~--------~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~----~~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 83 GT--------EDDAVGEATIPLEPVFVEGSIPPTAYNVVK----DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp CT--------TTCCSEEEEEESHHHHHHSEEEEEEEEEEE----TTEEEEEEEEEEEEEEC
T ss_pred CC--------CCCEEEEEEEEhHHhcccCCcCcEEEEecC----CCccCEEEEEEEEEEeC
Confidence 76 78999999999999744 454577999854 12446999999999764
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.81 E-value=6.7e-20 Score=166.71 Aligned_cols=123 Identities=26% Similarity=0.412 Sum_probs=106.7
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccC-CCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-C
Q 004109 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K 112 (773)
Q Consensus 35 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~-~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~ 112 (773)
.+.|+|+|+|++|++|+..+..+++||||++++++++.+|++++ ++.||.|||+|.|.+.+. ...|.|+|||++.. +
T Consensus 7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~ 85 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVGTE 85 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSCTT
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecCCCC
Confidence 56799999999999999999889999999999999998999986 589999999999999864 46699999999998 8
Q ss_pred CeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEecc
Q 004109 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (773)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (773)
|++||++.|+|.++... ......|+.|... .+..|+|++++.|.+.
T Consensus 86 d~~iG~~~i~L~~l~~~----~~~~~~~~~l~~~--~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 86 DDAVGEATIPLEPVFVE----GSIPPTAYNVVKD--EEYKGEIWVALSFKPS 131 (136)
T ss_dssp TCCSEEEEEESHHHHHH----SEEEEEEEEEEET--TEEEEEEEEEEEEEEC
T ss_pred CCEEEEEEEEhHHhccc----CCcCcEEEEecCC--CccCEEEEEEEEEEeC
Confidence 99999999999998644 2234689998753 3568999999999764
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2e-19 Score=161.31 Aligned_cols=118 Identities=16% Similarity=0.212 Sum_probs=100.9
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC---eeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHL 437 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~ 437 (773)
+.|+|+|++|+||+.....|..|.+||||++.+++ ++.||+++.++.||.|||.|.|.+.++ ...|+|+|||++..
T Consensus 3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~ 82 (126)
T d1rlwa_ 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred cEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCC
Confidence 68999999999998754334457899999999976 568999999999999999999999876 56899999999864
Q ss_pred CCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEe
Q 004109 438 HGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~ 494 (773)
+|++||++.|+|+++..++....||+|.. ...|.+++++++.
T Consensus 83 ---------~d~~lG~~~i~L~~l~~~~~~~~~~~L~~------~~~g~i~~~l~~~ 124 (126)
T d1rlwa_ 83 ---------MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLEVA 124 (126)
T ss_dssp ---------CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEECC
T ss_pred ---------CCCeEEEEEEEHHHccCCCeEEEEEEccC------CCeEEEEEEEEEE
Confidence 58899999999999999999999999932 2358888888763
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.78 E-value=1.2e-18 Score=157.79 Aligned_cols=120 Identities=20% Similarity=0.319 Sum_probs=101.9
Q ss_pred ceEEEEEEEccCCCCCcc--------CCCCCCCCcEEEEEECCee-eeeeeccCCCCCccccEEEEEEeCCCceEEEEEE
Q 004109 362 GVLELGILNAQGLMPMKT--------KDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVF 432 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~--------~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~ 432 (773)
|.|+|.|++|+||++.+. ....+.+||||++.++++. .+|++++++.||.|||.|.|++.+ ...|+|+||
T Consensus 6 G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V~ 84 (136)
T d1gmia_ 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELAVF 84 (136)
T ss_dssp EEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEE
T ss_pred EEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEEEEE
Confidence 899999999999997541 1245679999999999866 589999999999999999999976 478999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccC--CeEEeeEEeEeecCCCcccccEEEEEEEEeecch
Q 004109 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETD--RVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSL 498 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~~~ 498 (773)
|++.++ +|++||++.|+|+++..+ .....|++|. ..|+++++++++++++
T Consensus 85 d~~~~~--------~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------p~G~v~l~v~~~~~~g 136 (136)
T d1gmia_ 85 HDAPIG--------YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGSSG 136 (136)
T ss_dssp ECCSSS--------SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEEEC
T ss_pred EecCCC--------CceeEEEEEEEHHHhhhcCCcceeEEEeCC--------CCcEEEEEEEEEeCCC
Confidence 999876 799999999999998543 4567899983 3599999999988653
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.1e-18 Score=155.52 Aligned_cols=122 Identities=21% Similarity=0.216 Sum_probs=98.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004109 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (773)
+.|.|+|++|++++..+..+.+||||+++++++.++|++++++.||.|||.|.|.+.+ .+.|.|+|||++.+ +|++|
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d~~i 83 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLL 83 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCEEE
T ss_pred eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCCceE
Confidence 5799999999999988888899999999999999999999999999999999999975 46899999999998 89999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCC-CCceeeEEEEEEEE
Q 004109 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVWM 161 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~~ 161 (773)
|++.++|.++.............|+.|.... +....|+|.+.+..
T Consensus 84 G~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~ 129 (133)
T d2nq3a1 84 GTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG 129 (133)
T ss_dssp EEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred EEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence 9999999998654221112233455555543 44567999987743
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1e-18 Score=156.57 Aligned_cols=116 Identities=27% Similarity=0.450 Sum_probs=99.0
Q ss_pred eEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC
Q 004109 38 QYLYVRVVKAKDLPPK---DVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~---d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~ 111 (773)
+.|+|+|++|+||+.. |..|++||||++.+++ ++++|+++.++.||.|||+|.|.+.+.....|.|+|||.+..
T Consensus 3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~ 82 (126)
T d1rlwa_ 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred cEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCC
Confidence 5799999999999864 3357899999999976 678999999999999999999999877778899999999888
Q ss_pred CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEe
Q 004109 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (773)
+|++||++.++|.++..+. ....||+|... ..|+|++++.+.
T Consensus 83 ~d~~lG~~~i~L~~l~~~~-----~~~~~~~L~~~----~~g~i~~~l~~~ 124 (126)
T d1rlwa_ 83 MDETLGTATFTVSSMKVGE-----KKEVPFIFNQV----TEMVLEMSLEVA 124 (126)
T ss_dssp CCEEEEEEEEEGGGSCTTC-----EEEEEEEETTT----EEEEEEEEEECC
T ss_pred CCCeEEEEEEEHHHccCCC-----eEEEEEEccCC----CeEEEEEEEEEE
Confidence 9999999999999997543 35689999654 258888877553
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1.4e-18 Score=156.23 Aligned_cols=120 Identities=30% Similarity=0.423 Sum_probs=97.5
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEec--CC
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKD--RI 96 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~--~~ 96 (773)
+|...+++.|+ +..+.|.|+|++|+||+..+..+.+||||++++.+ ++++|++++++.||+|||+|.|.+. +.
T Consensus 4 ~G~l~~sl~y~--~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~ 81 (130)
T d1dqva1 4 CGRISFALRYL--YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 81 (130)
T ss_dssp SCEEEEEEECC--SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred cEEEEEEEEEE--CCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHc
Confidence 45566777776 55679999999999999999889999999999943 5789999999999999999999984 33
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004109 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
....|.|+|||++.+ +|++||++.|++.....+.+. ....|++|.+.
T Consensus 82 ~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~---~~~~W~~L~~~ 129 (130)
T d1dqva1 82 AQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPP---DRPLWRDILEG 129 (130)
T ss_dssp SSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCS---SCCCCEECBCC
T ss_pred CCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCC---CCcEEEecccC
Confidence 467899999999988 899999999986544333222 24569999863
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=2.7e-18 Score=157.24 Aligned_cols=117 Identities=27% Similarity=0.464 Sum_probs=99.5
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeeeeccCCCCCCeeecEEEEEec--CC
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVFAFSKD--RI 96 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~---~~~~~~T~~~~~~~nP~WnE~f~f~v~--~~ 96 (773)
+|...+++.|+... +.|.|+|++|+||+..+..+.+||||++++ +.++++|++++++.||.|||+|.|.+. ++
T Consensus 20 ~G~l~~sl~y~~~~--~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l 97 (143)
T d1rsya_ 20 LGKLQYSLDYDFQN--NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97 (143)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHH
T ss_pred ceEEEEEEEEeCCC--CEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeecc
Confidence 45567777777554 699999999999999998899999999999 336789999999999999999999874 33
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeee
Q 004109 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (773)
....|.|+|||++.. ++++||.+.|+|.++..+. ...+||+|+.
T Consensus 98 ~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~s 142 (143)
T d1rsya_ 98 GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQS 142 (143)
T ss_dssp TTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSS-----CEEEEEECBC
T ss_pred CCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCC-----CCccEEeCCC
Confidence 567899999999988 8999999999999997543 3568999975
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=2.7e-18 Score=154.97 Aligned_cols=102 Identities=25% Similarity=0.432 Sum_probs=90.0
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCeeeeeeeccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDN 434 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~ 434 (773)
+.|.|.|++|+||+++ +..|.+||||++.+ +..+.+|+++++|.||.|||.|.|.+..+ ...|.|+|||+
T Consensus 15 ~~L~V~V~~a~~L~~~---d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 91 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 91 (132)
T ss_dssp SEEEEEEEEEESCCCC---STTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEeeeCCCCC---CCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEec
Confidence 6899999999999987 55588999999998 45678999999999999999999998864 46899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
|.++ +|++||.+.|+|+++..+. ..+||+|.+
T Consensus 92 d~~~--------~d~~iG~~~i~l~~l~~~~-~~~W~~L~~ 123 (132)
T d1a25a_ 92 DLTS--------RNDFMGSLSFGISELQKAG-VDGWFKLLS 123 (132)
T ss_dssp CSSS--------CCEEEEEEEEEHHHHTTCC-EEEEEECBC
T ss_pred CCCC--------CCcEeEEEEEeHHHcCCCC-CCeEEECCC
Confidence 9876 7899999999999987654 688999965
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.75 E-value=4.7e-18 Score=153.88 Aligned_cols=116 Identities=21% Similarity=0.387 Sum_probs=98.6
Q ss_pred eeEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEECCee-eeeeccCCCCCCeeecEEEEEecCCCCceEEEE
Q 004109 37 MQYLYVRVVKAKDLPPKD-----------VTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVT 104 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d-----------~~~~~dpyv~v~~~~~~-~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~ 104 (773)
.|.|+|+|++|++|++.+ ..+.+||||+++++++. .+|+++.++.||.|||+|.|.+.+ ...|.|+
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~i~ 82 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIELA 82 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec--CCceEEE
Confidence 589999999999998753 35689999999999865 689999999999999999999975 4689999
Q ss_pred EEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004109 105 VKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 105 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
|||.+.+ +|++||.++|+|.++..+.. .....|++|+. .|+|++.+.+.+
T Consensus 83 V~d~~~~~~d~~iG~~~i~l~~l~~~~~---~~~~~w~~L~p------~G~v~l~v~~~~ 133 (136)
T d1gmia_ 83 VFHDAPIGYDDFVANCTIQFEELLQNGS---RHFEDWIDLEP------EGKVYVIIDLSG 133 (136)
T ss_dssp EEECCSSSSCEEEEEEEEEHHHHTSTTC---SEEEEEEECBS------SCEEEEEEEEEE
T ss_pred EEEecCCCCceeEEEEEEEHHHhhhcCC---cceeEEEeCCC------CcEEEEEEEEEe
Confidence 9999998 89999999999999986642 23568999964 488998887754
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=5.1e-18 Score=153.16 Aligned_cols=104 Identities=35% Similarity=0.628 Sum_probs=90.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeccCCCCCCeeecEEEEEecCC-CCceEEEEEEeCCCC
Q 004109 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAFSKDRI-QSSVLEVTVKDKDFV 111 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~-----~~~~~~T~~~~~~~nP~WnE~f~f~v~~~-~~~~l~i~V~d~~~~ 111 (773)
+.|.|+|++|+||+..+..|.+||||++++ +..+++|++++++.||+|||+|.|.+... ....|.|+|||++..
T Consensus 15 ~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~ 94 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 94 (132)
T ss_dssp SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCCC
Confidence 689999999999999999999999999999 33578999999999999999999998543 245799999999998
Q ss_pred -CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 112 -KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
+|++||.+.|+|.++..+ ...+||+|.+.+
T Consensus 95 ~~d~~iG~~~i~l~~l~~~------~~~~W~~L~~~~ 125 (132)
T d1a25a_ 95 SRNDFMGSLSFGISELQKA------GVDGWFKLLSQE 125 (132)
T ss_dssp SCCEEEEEEEEEHHHHTTC------CEEEEEECBCHH
T ss_pred CCCcEeEEEEEeHHHcCCC------CCCeEEECCCCC
Confidence 899999999999998643 246899998753
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=6.8e-18 Score=154.56 Aligned_cols=104 Identities=24% Similarity=0.336 Sum_probs=92.1
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---CCeeeeeeeccCCCCCccccEEEEEEeC---CCceEEEEEEeC
Q 004109 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDN 434 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~ 434 (773)
.+.|.|.|++|+||+.+ +..|.+||||++.+ +.+..+|++++++.||.|||.|.|.+.. ....|.|+|||+
T Consensus 33 ~~~L~V~V~~a~~L~~~---~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~ 109 (143)
T d1rsya_ 33 NNQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDF 109 (143)
T ss_dssp TTEEEEEEEEEESCCCC---STTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEEC
T ss_pred CCEEEEEEEEccCCCCC---CCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEc
Confidence 37999999999999977 55688999999998 5566899999999999999999998864 257899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
+.++ ++++||.+.|+|+++..++...+||+|.+
T Consensus 110 d~~~--------~~~~iG~~~i~L~~~~~~~~~~~W~~L~s 142 (143)
T d1rsya_ 110 DRFS--------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp CSSS--------CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred CCCC--------CCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence 8876 78899999999999998888899999964
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=1e-18 Score=160.23 Aligned_cols=116 Identities=35% Similarity=0.657 Sum_probs=97.5
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--------------eeeeeeccCCCCCCeeecE
Q 004109 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN--------------YKGTTRHFEKKTNPEWNQV 88 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~--------------~~~~T~~~~~~~nP~WnE~ 88 (773)
|...++..|+ .+.|.|+|++|+||+..+..|.+||||++++.+ ++++|++++++.||.|||+
T Consensus 7 G~l~lsl~y~----~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~ 82 (142)
T d1rh8a_ 7 GEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82 (142)
T ss_dssp CEEEEEEEEE----TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEE
T ss_pred eEEEEEEEEe----CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEE
Confidence 3456777775 478999999999999999999999999999842 2367999999999999999
Q ss_pred EEEEe---cCCCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 89 FAFSK---DRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 89 f~f~v---~~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
|.|.. .++....|.|+|||++.+ +|++||++.|+|.++..+. ...+||+|.+++
T Consensus 83 f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~-----~~~~W~~L~~~~ 140 (142)
T d1rh8a_ 83 VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD-----NTPRWYPLKEQT 140 (142)
T ss_dssp EEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT-----TCCEEEECBCCC
T ss_pred EEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCC-----CceEEEECcCcC
Confidence 99974 234567899999999988 8999999999999997653 356999999875
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=2.3e-17 Score=146.50 Aligned_cols=102 Identities=30% Similarity=0.454 Sum_probs=88.0
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004109 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (773)
|+.|.|+|++|++|.+.+ ++||||++++++++.+|++++ +.||.|||+|.|.+.++ ...|.|+|||.+..+|++|
T Consensus 1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~~d~~l 75 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIWDTMV 75 (128)
T ss_dssp CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSSCEEEE
T ss_pred CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCcCCcce
Confidence 578999999999999866 679999999999999999886 56999999999999876 5779999999988899999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004109 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
|++.|+|+++.... .....+||+|..+
T Consensus 76 G~~~I~L~~l~~~~---~~~~~~W~~L~~~ 102 (128)
T d2cjta1 76 GTVWIPLRTIRQSN---EEGPGEWLTLDSQ 102 (128)
T ss_dssp EEEEEEGGGSCBCS---SCCCCEEEECBC-
T ss_pred EEEEEEehhhccCC---CCCCCeeEECCcc
Confidence 99999999997543 2235689999764
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=4.2e-17 Score=146.61 Aligned_cols=117 Identities=24% Similarity=0.405 Sum_probs=94.4
Q ss_pred eEEEEEEEEeecCCC--CCCCCCCCcEEEEEEC-----CeeeeeeccCC-CCCCeeecEEEEEecCCCCceEEEEEEeCC
Q 004109 38 QYLYVRVVKAKDLPP--KDVTGSCDPYVEVKMG-----NYKGTTRHFEK-KTNPEWNQVFAFSKDRIQSSVLEVTVKDKD 109 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~--~d~~~~~dpyv~v~~~-----~~~~~T~~~~~-~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~ 109 (773)
..|.|+|++|++|+. .+.++.+||||++++. .++++|+++++ +.||.|||+|.|.+.......|.|+|||+|
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 479999999999975 4456789999999994 36788998865 479999999999987666678999999999
Q ss_pred CC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCce-eeEEEEEEEEe
Q 004109 110 FV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWMG 162 (773)
Q Consensus 110 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~~ 162 (773)
.. +|++||++.++|..+..+ .+|++|.+..|+.. .+.|.+.+.+.
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g--------~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCE--------EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEEEEeccCCC--------CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence 98 899999999999998643 37999999888753 46888877653
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.7e-17 Score=149.51 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=94.9
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 441 (773)
+.|+|+|++|++++.. +..+.+||||++.+|++.++|++++++.||.|||.|.|++.+ .+.|+|+|||+|.++
T Consensus 6 ~~L~v~v~~A~~~~~~---~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~--- 78 (133)
T d2nq3a1 6 SQLQITVISAKLKENK---KNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLK--- 78 (133)
T ss_dssp EEEEEEEEEEEECCCC-----CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSS---
T ss_pred eEEEEEEEEeECCCcC---CCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCC---
Confidence 7899999999999875 344679999999999999999999999999999999999864 678999999999886
Q ss_pred CCCCCCCCccEEEEEecCccc---cCCeEEeeEEeEeec-CCCcccccEEEEEEEE
Q 004109 442 KAGGARDSRIGKVRIRLSTLE---TDRVYTHSYPLLVLY-PNGVKKMGEIHLAVRF 493 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~-~~g~~~~G~v~l~~~~ 493 (773)
+|++||++.|+|+++. .+.....++++.... .++....|+|.+.+..
T Consensus 79 -----~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~ 129 (133)
T d2nq3a1 79 -----SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG 129 (133)
T ss_dssp -----CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred -----CCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence 8999999999999873 233333444443222 2344456888876653
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=3.8e-17 Score=146.91 Aligned_cols=118 Identities=19% Similarity=0.303 Sum_probs=90.5
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCeeeeeeeccCC-CCCccccEEEEEEeCC-CceEEEEEEeC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDS-PTPKWNEQYTWEVFDP-CTVITIGVFDN 434 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t-~~P~wne~~~f~v~~~-~~~l~v~v~d~ 434 (773)
..|+|.|++|+||+..+. +..+.+||||++++ +.+..+|++++++ +||.|||+|.|.+..+ ...|.|+|||+
T Consensus 4 ~~l~V~Vi~a~~L~~~~~-~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~ 82 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNK-NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY 82 (131)
T ss_dssp EEEEEEEEEEESCCCCC------CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred EEEEEEEEEeeCCCCCCC-CCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEe
Confidence 479999999999976533 45678999999998 3467899988765 7999999999998765 56899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcc-cccEEEEEEEE
Q 004109 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRF 493 (773)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~v~l~~~~ 493 (773)
|..+ +|++||++.|+|+.+..| .+|+||.+. +|.. ..+.+.+.+.+
T Consensus 83 d~~~--------~d~~iG~~~i~l~~l~~g---~~~~~L~~~--~g~~~~~~~L~v~i~~ 129 (131)
T d1qasa2 83 DSSS--------KNDFIGQSTIPWNSLKQG---YRHVHLLSK--NGDQHPSATLFVKISI 129 (131)
T ss_dssp CTTT--------CCEEEEEEEEEGGGBCCE---EEEEEEECT--TSCEEEEEEEEEEEEE
T ss_pred cCCC--------CCcEEEEEEEEEeccCCC---CEEEECCCC--CcCCCCCCEEEEEEEE
Confidence 9876 789999999999999776 368999663 3322 23555555554
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=2.9e-17 Score=145.77 Aligned_cols=98 Identities=18% Similarity=0.240 Sum_probs=85.6
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 441 (773)
+.|.|.|.+|++|.+. ++.||||++++++.+.+|.+++ +.||.|||.|.|++.++...|.|+|||++..
T Consensus 2 ~~L~V~v~~a~~l~~~------~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~---- 70 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI---- 70 (128)
T ss_dssp EEEEEEEEEEECSSCG------GGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS----
T ss_pred eEEEEEEEEEECCCCC------CCcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc----
Confidence 6899999999999764 4689999999999999999886 5599999999999999999999999999865
Q ss_pred CCCCCCCCccEEEEEecCcccc--CCeEEeeEEeEe
Q 004109 442 KAGGARDSRIGKVRIRLSTLET--DRVYTHSYPLLV 475 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~ 475 (773)
+|++||++.|+|+++.. +.....||+|..
T Consensus 71 -----~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~ 101 (128)
T d2cjta1 71 -----WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 101 (128)
T ss_dssp -----CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred -----CCcceEEEEEEehhhccCCCCCCCeeEECCc
Confidence 58899999999999853 344568999954
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.1e-17 Score=146.39 Aligned_cols=112 Identities=29% Similarity=0.573 Sum_probs=89.7
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeecEEEEE-ec--CC
Q 004109 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG-----NYKGTTRHFEKKTNPEWNQVFAFS-KD--RI 96 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~-----~~~~~T~~~~~~~nP~WnE~f~f~-v~--~~ 96 (773)
..+++.|+ +..+.|.|+|++|+||+..+..+.+||||++.+. ..+++|++++++.||.|||+|.|. +. +.
T Consensus 3 l~l~l~y~--~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l 80 (125)
T d2bwqa1 3 LSIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF 80 (125)
T ss_dssp EEEEEEEE--TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGG
T ss_pred EEEEEEEE--CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhc
Confidence 45566665 5557999999999999999888999999999993 256899999999999999999996 32 33
Q ss_pred CCceEEEEEEeCCCC---CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004109 97 QSSVLEVTVKDKDFV---KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
....|.|+|||.+.. ++++||++.|+|.++..+. ..+||+|+
T Consensus 81 ~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~------~~~Wy~L~ 125 (125)
T d2bwqa1 81 RERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQ 125 (125)
T ss_dssp GGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS------CEEEEECC
T ss_pred CCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC------CCEEEeCc
Confidence 456899999999875 5679999999999987553 35899985
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=4.7e-18 Score=155.69 Aligned_cols=103 Identities=25% Similarity=0.372 Sum_probs=89.4
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC--------------eeeeeeeccCCCCCccccEEEEEEeC----C
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ--------------KWVRTRTIIDSPTPKWNEQYTWEVFD----P 423 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~--------------~~~~T~~~~~t~~P~wne~~~f~v~~----~ 423 (773)
|.|.|.|++|+||+++ +..|.+||||++.+.+ ...||++++++.||.|||.|.|.+.. .
T Consensus 18 ~~L~V~V~~A~~L~~~---d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~ 94 (142)
T d1rh8a_ 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLM 94 (142)
T ss_dssp TEEEEEEEEEESCCCC---SSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHT
T ss_pred CEEEEEEEEeECCCCc---CCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccC
Confidence 7899999999999987 5568899999999832 23689999999999999999997543 3
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004109 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 424 ~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
...|.|.|||+|.++ +|++||.+.|+|+++..+....+||+|..
T Consensus 95 ~~~L~i~V~d~d~~~--------~~~~lG~~~i~L~~l~~~~~~~~W~~L~~ 138 (142)
T d1rh8a_ 95 KKTLEVTVWDYDRFS--------SNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp TCEEEEEEEEECSSS--------CEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred CCEEEEEEEEecCCC--------CCeeeEEEEEEhHHcCCCCCceEEEECcC
Confidence 668999999999876 78999999999999988888889999965
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=5.7e-17 Score=145.61 Aligned_cols=108 Identities=23% Similarity=0.355 Sum_probs=88.9
Q ss_pred eEEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEEeecccCCCCCccccceEEEEeeCC--CCCeEEEEEEEccC
Q 004109 199 LWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLG---NQALRTRVSASRTINPMWNEDLMFVAAEP--FEEHLILTVEDRVA 273 (773)
Q Consensus 199 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~---~~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~~~ 273 (773)
.+.|.|+|++|+||+.++.++.+||||++++. .++++|+++++ +.||.|||.|.|.+... ....|.|+|||++.
T Consensus 17 ~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~ 95 (130)
T d1dqva1 17 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR 95 (130)
T ss_dssp SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS
T ss_pred CCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcC-CCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCC
Confidence 34799999999999999999999999999994 46789999876 99999999999998543 35579999999999
Q ss_pred CCCCceeEEEEEeccccccccCCCCCCceEEEcccC
Q 004109 274 PNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (773)
Q Consensus 274 ~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~ 309 (773)
.+++++||++.|++....... ......|++|.+.
T Consensus 96 ~~~d~~iG~~~i~~~~~l~~~--~~~~~~W~~L~~~ 129 (130)
T d1dqva1 96 FSRHDLIGQVVLDNLLELAEQ--PPDRPLWRDILEG 129 (130)
T ss_dssp SSCCCEEEEEECCCTTGGGSS--CSSCCCCEECBCC
T ss_pred CCCCceEEEEEECchhhhhcC--CCCCcEEEecccC
Confidence 999999999999865433221 2234569999874
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.8e-16 Score=142.53 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=88.6
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC----eeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 004109 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ----KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVF 432 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~----~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~ 432 (773)
..+.|.|.|++|+||+. .|.+||||++.+.+ ...+|++++++.||.|||.|.|.+... ...|.|+||
T Consensus 24 ~~~~L~V~v~~a~~L~~------~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T d1wfma_ 24 QKAELFVTRLEAVTSNH------DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp TTTEEEEEEEEEECCCC------SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred CCCEEEEEEEEcCCCCC------CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEe
Confidence 34799999999999943 36789999999932 347899999999999999999998742 578999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEee
Q 004109 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 476 (773)
|++.++ ++++||++.|+|.++..+.....|++|...
T Consensus 98 d~~~~~--------~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~ 133 (138)
T d1wfma_ 98 TCDRFS--------RHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp ECCSSC--------TTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred eecccc--------cceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence 999876 789999999999999877778899999764
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.3e-16 Score=142.29 Aligned_cols=105 Identities=22% Similarity=0.364 Sum_probs=81.9
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCeeeeeeeccCCCCCccccEEEEEEeCC----CceEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITI 429 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v 429 (773)
+..+.|.|.|++|+||++. +..+.+||||++.+ +....||++++++.||.|||.|.|....+ ...|.|
T Consensus 11 ~~~~~L~V~V~~a~~L~~~---~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i 87 (125)
T d2bwqa1 11 KVGHQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEI 87 (125)
T ss_dssp TTTTEEEEEEEEEESCCCC---TTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEE
T ss_pred CCCCEEEEEEEEeECCCCc---CCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEE
Confidence 3347999999999999986 45588999999998 23458999999999999999999974332 458999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004109 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 430 ~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
.|||.+.++ .+++++||++.|+|+++..+.. .+||+|
T Consensus 88 ~v~d~~~~~------~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L 124 (125)
T d2bwqa1 88 TLWDQARVR------EEESEFLGEILIELETALLDDE-PHWYKL 124 (125)
T ss_dssp EEEEC-------------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred EEEECCCCC------CCCCeeEEEEEEEchhcCCCCC-CEEEeC
Confidence 999998753 1256799999999999876553 579998
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.9e-16 Score=142.40 Aligned_cols=114 Identities=21% Similarity=0.335 Sum_probs=93.2
Q ss_pred ceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeccCCCCCCeeecEEEEEec--CCCCc
Q 004109 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQSS 99 (773)
Q Consensus 26 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~----~~~~T~~~~~~~nP~WnE~f~f~v~--~~~~~ 99 (773)
++....++....+.|.|+|++|+||.. .+.+||||++.+.+ ..++|++++++.||.|||+|.|.+. ++...
T Consensus 14 ~l~~sl~y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~ 90 (138)
T d1wfma_ 14 KLHYCLDYDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTA 90 (138)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTC
T ss_pred EEEEEEEECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccce
Confidence 344444444566799999999999953 46789999999954 3578999999999999999999984 44578
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
.|.|+|||.+.+ ++++||++.|+|.++.... ....|++|....
T Consensus 91 ~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~W~~L~~~~ 134 (138)
T d1wfma_ 91 TLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL-----GAAQWGELKTSG 134 (138)
T ss_dssp EEEEEEEECCSSCTTSCSEEEEEESSSSSSCT-----TCCEEEECCCCS
T ss_pred EEEEEEeeecccccceeeeEEEEEhHHccCCC-----CceEeEeCCCCC
Confidence 899999999988 8999999999999986542 357899998864
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=4e-16 Score=141.52 Aligned_cols=106 Identities=26% Similarity=0.458 Sum_probs=89.2
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCC-CCCcEEEEEE---CCeeeeeeccCCCCCCeeecEEEEE-ec--
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTG-SCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVFAFS-KD-- 94 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~-~~dpyv~v~~---~~~~~~T~~~~~~~nP~WnE~f~f~-v~-- 94 (773)
+|...+++.|+. ..+.|.|+|++|+||+..+..+ .+||||++.+ +.++++|++++++.||.|||+|.|. +.
T Consensus 8 ~G~l~~sl~Y~~--~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 85 (138)
T d1ugka_ 8 LGTLFFSLEYNF--ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT 85 (138)
T ss_dssp CCEEEEEEEEEG--GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCST
T ss_pred CEEEEEEEEEeC--CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHH
Confidence 566778888875 4469999999999999887655 5799999999 3467899999999999999999996 33
Q ss_pred CCCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCC
Q 004109 95 RIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKR 129 (773)
Q Consensus 95 ~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 129 (773)
+.....|+|+|||.+.+ ++++||++.|+|.++...
T Consensus 86 ~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~ 121 (138)
T d1ugka_ 86 QIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121 (138)
T ss_dssp TGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCT
T ss_pred HcccceEEEEEEECCCCCCCcEEEEEEEEcccccCC
Confidence 23456899999999988 899999999999998644
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=3.2e-16 Score=142.25 Aligned_cols=115 Identities=24% Similarity=0.421 Sum_probs=92.8
Q ss_pred CcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec--CC
Q 004109 24 GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RI 96 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~--~~ 96 (773)
...+++.|+ +..+.|.|+|++|+||+..+..+.+||||++++.+ .+++|++++++.||.|||+|.|.+. ++
T Consensus 3 ~l~l~l~Y~--~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l 80 (137)
T d2cm5a1 3 KILVSLMYS--TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDL 80 (137)
T ss_dssp EEEEEEEEE--TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred EEEEEEEEE--CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHc
Confidence 345666666 56679999999999999988889999999999832 4678999999999999999999984 34
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004109 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
....|.|.|||.+.. ++++||++.+++..+..+ ..+|++|.+..
T Consensus 81 ~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~~-------~~~W~~l~~~~ 125 (137)
T d2cm5a1 81 AKKSLDISVWDYDIGKSNDYIGGCQLGISAKGER-------LKHWYECLKNK 125 (137)
T ss_dssp GGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHH-------HHHHHHHHHCT
T ss_pred cccEEEEEeeeCCCCCCCCEEEEEEeCccccCcc-------hhhhhhHhhCC
Confidence 467899999999988 999999999999765322 23466555543
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=7.3e-16 Score=139.88 Aligned_cols=103 Identities=21% Similarity=0.332 Sum_probs=83.1
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCeeeeeeeccCCCCCccccEEEEEEeCC---CceEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~ 430 (773)
+..+.|.|.|++|+||+.. +..+.+||||++.+ .....||++++++.||.|||.|.|++... ...|.|.
T Consensus 12 ~~~~~L~V~v~~a~nL~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~ 88 (137)
T d2cm5a1 12 TQQGGLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDIS 88 (137)
T ss_dssp TTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEE
T ss_pred CCCCEEEEEEEEEECCCCC---CCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEE
Confidence 4448999999999999876 44578999999998 23457999999999999999999998743 5689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004109 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
|||++.++ ++++||++.|++..+..+ ..+||+|.
T Consensus 89 v~~~~~~~--------~~~~iG~~~i~l~~~~~~--~~~W~~l~ 122 (137)
T d2cm5a1 89 VWDYDIGK--------SNDYIGGCQLGISAKGER--LKHWYECL 122 (137)
T ss_dssp EEECCSSS--------CCEEEEEEEEETTCCHHH--HHHHHHHH
T ss_pred eeeCCCCC--------CCCEEEEEEeCccccCcc--hhhhhhHh
Confidence 99998876 789999999999875322 23455543
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=3.9e-16 Score=144.96 Aligned_cols=122 Identities=30% Similarity=0.402 Sum_probs=96.4
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC-
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR- 95 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~- 95 (773)
.|...+++.|+ +..+.|.|+|++|+||+..+..+.+||||++++.. .+++|++++++.||+|||+|.|.+..
T Consensus 11 ~G~l~~sl~Y~--~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~ 88 (157)
T d1uowa_ 11 LGDICFSLRYV--PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 88 (157)
T ss_dssp CCEEEEEEEEE--TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred eeEEEEEEEEc--CCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHH
Confidence 45556776666 55579999999999999988889999999999843 34689999999999999999999853
Q ss_pred -CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCC--------CCCCCCCcCeEEEeeeC
Q 004109 96 -IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKR--------VPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 96 -~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~--------~~~~~~~~~~w~~L~~~ 146 (773)
.....|.|+|||++.+ ++++||++.|++...... ..+ .....+|++|..+
T Consensus 89 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~-~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP-RRPIAQWHTLQVE 148 (157)
T ss_dssp GGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHST-TCCEEEEEECBCH
T ss_pred HcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCC-CCceeEeEeCCCC
Confidence 3456899999999998 899999999999764211 001 2335689988764
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=6e-16 Score=140.42 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=82.0
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC---eeeeeeeccCCCCCccccEEEEEEeCC---CceEEEE
Q 004109 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~ 430 (773)
+..+.|.|.|++|+||+.+ +..+.+||||++.+ ++ ...||++++++.||.|||+|.|.+... ...|.|.
T Consensus 12 ~~~~~L~V~v~~a~~L~~~---~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~ 88 (138)
T d1w15a_ 12 STTNTLTVVVLKARHLPKS---DVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFL 88 (138)
T ss_dssp TTTTEEEEEEEEEESCC---------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEE
T ss_pred CCCCEEEEEEEEeECCCCC---CCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEE
Confidence 4447999999999999987 45578999999998 33 246899999999999999999998643 4579999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCcc------------ccCCeEEeeEEeE
Q 004109 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTL------------ETDRVYTHSYPLL 474 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~~~~L~ 474 (773)
|||++.++ ++++||++.|++... ..++.+.+||+|.
T Consensus 89 v~d~~~~~--------~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~ 136 (138)
T d1w15a_ 89 VLDSERGS--------RNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLC 136 (138)
T ss_dssp EEECCTTS--------CCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred EEeCCCCC--------CCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEcc
Confidence 99999876 789999999999864 2356677777774
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.4e-15 Score=137.93 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=93.1
Q ss_pred eeeEEEEEEEEccCcccCCCCCccCCCCCccccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---CCee
Q 004109 322 FASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKW 398 (773)
Q Consensus 322 ~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~~~ 398 (773)
..|+|++++++. +..+.|.|.|++|+||+..+.. .+.+||||++.+ +...
T Consensus 7 ~~G~l~~sl~Y~-------------------------~~~~~L~V~V~~a~~L~~~d~~--~~~~dpyV~v~l~~~~~~~ 59 (138)
T d1ugka_ 7 GLGTLFFSLEYN-------------------------FERKAFVVNIKEARGLPAMDEQ--SMTSDPYIKMTILPEKKHK 59 (138)
T ss_dssp CCCEEEEEEEEE-------------------------GGGTEEEEEEEEEESCCCCBTT--TTBCEEEEEEEEETTTCSE
T ss_pred CCEEEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCCCCC--CCccceEEEEEEcCCCCEe
Confidence 368998888742 2337899999999999987432 345899999999 4567
Q ss_pred eeeeeccCCCCCccccEEEEEEeCC----CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCcccc-CCeEEeeEEe
Q 004109 399 VRTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET-DRVYTHSYPL 473 (773)
Q Consensus 399 ~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L 473 (773)
+||++++++.||.|||.|.|..... ...|+|+|||.|.++ +|++||.+.|+|+++.. +.....|+.+
T Consensus 60 ~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~--------~~~~iG~~~i~L~~~~~~~~~~~~~~~~ 131 (138)
T d1ugka_ 60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS--------RDDIIGEVLIPLSGIELSEGKMLMNREI 131 (138)
T ss_dssp EECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSC--------CCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred EeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCC--------CCcEEEEEEEEcccccCCCCeEEEEeec
Confidence 8999999999999999999974432 458999999998876 78999999999999853 3344555555
Q ss_pred E
Q 004109 474 L 474 (773)
Q Consensus 474 ~ 474 (773)
.
T Consensus 132 ~ 132 (138)
T d1ugka_ 132 I 132 (138)
T ss_dssp B
T ss_pred c
Confidence 3
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=4.1e-16 Score=141.51 Aligned_cols=100 Identities=27% Similarity=0.423 Sum_probs=79.3
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeccCCCCCCeeecEEEEEec--CCC
Q 004109 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG--N---YKGTTRHFEKKTNPEWNQVFAFSKD--RIQ 97 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~--~---~~~~T~~~~~~~nP~WnE~f~f~v~--~~~ 97 (773)
..+++.|+ +..+.|.|+|++|+||+..+..+.+||||++++. + .+++|++++++.||.|||+|.|.+. +..
T Consensus 4 l~~sl~Y~--~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~ 81 (138)
T d1w15a_ 4 LLVSLCYQ--STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLE 81 (138)
T ss_dssp EEEEEEEE--TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSST
T ss_pred EEEEEEEc--CCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhC
Confidence 45565665 5667999999999999999888899999999983 2 3568999999999999999999984 344
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCcc
Q 004109 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEI 126 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l 126 (773)
...|.|.|||++.+ ++++||++.|++...
T Consensus 82 ~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 82 EISVEFLVLDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp TEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred ccEEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence 56799999999988 899999999998754
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=1.4e-15 Score=141.12 Aligned_cols=120 Identities=23% Similarity=0.282 Sum_probs=98.3
Q ss_pred CceeeEEEEEEEEccCcccCCCCCccCCCCCccccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--Ce
Q 004109 320 TKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--QK 397 (773)
Q Consensus 320 ~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~~ 397 (773)
....|+|.+++++ .+..+.|.|.|++|+||+.. +..+.+||||++.+. +.
T Consensus 8 ~~~~G~l~~sl~Y-------------------------~~~~~~L~V~V~~a~~L~~~---~~~~~~dpyV~v~l~~~~~ 59 (157)
T d1uowa_ 8 LEKLGDICFSLRY-------------------------VPTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGK 59 (157)
T ss_dssp GGCCCEEEEEEEE-------------------------ETTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEEETTE
T ss_pred ceeeeEEEEEEEE-------------------------cCCCCEEEEEEEEEEEcccc---cCCCCCCeeEEEEEecCCc
Confidence 3458999988874 23448999999999999876 455889999999983 32
Q ss_pred ---eeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCcc----------
Q 004109 398 ---WVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL---------- 461 (773)
Q Consensus 398 ---~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l---------- 461 (773)
..+|++++++.||+|||.|.|++... ...|.|.|||.+.++ ++++||++.|++...
T Consensus 60 ~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~--------~~~~iG~~~i~l~~~~~~~~hW~~~ 131 (157)
T d1uowa_ 60 RLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG--------KNDAIGKVFVGYNSTGAELRHWSDM 131 (157)
T ss_dssp EEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS--------CCCEEEEEEEETTCCHHHHHHHHHH
T ss_pred cccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCCCC--------CCceeEEEEEecccCChhHHHHHHH
Confidence 35899999999999999999998754 458999999999876 789999999999764
Q ss_pred --ccCCeEEeeEEeEe
Q 004109 462 --ETDRVYTHSYPLLV 475 (773)
Q Consensus 462 --~~~~~~~~~~~L~~ 475 (773)
..++.+..||+|..
T Consensus 132 ~~~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 132 LANPRRPIAQWHTLQV 147 (157)
T ss_dssp HHSTTCCEEEEEECBC
T ss_pred HhCCCCceeEeEeCCC
Confidence 23567789999964
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=2e-16 Score=144.96 Aligned_cols=104 Identities=23% Similarity=0.365 Sum_probs=88.5
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec--
Q 004109 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD-- 94 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~-- 94 (773)
+|...+++.|+ +..|.|.|+|++|+||+..+..+.+||||++++.+ .+++|++++++.||.|||+|.|.+.
T Consensus 6 ~G~l~~sl~Y~--~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~ 83 (145)
T d1dqva2 6 LGELNFSLCYL--PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 83 (145)
T ss_dssp CCEEEEEEEEE--TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSG
T ss_pred ceEEEEEEEEc--CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehh
Confidence 34456777776 66789999999999999988888999999999965 2568999999999999999999874
Q ss_pred CCCCceEEEEEEeCCCC-CCeeeEEEEEEcCccC
Q 004109 95 RIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIP 127 (773)
Q Consensus 95 ~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~ 127 (773)
++....|.|.|||.+.. ++++||.+.|++..+.
T Consensus 84 ~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~ 117 (145)
T d1dqva2 84 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 117 (145)
T ss_dssp GGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred hcCCCEEEEEEEecCCCCCCcEEEEEEECchHcC
Confidence 34567899999999988 8999999999998763
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=4.7e-15 Score=130.76 Aligned_cols=113 Identities=17% Similarity=0.277 Sum_probs=86.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCC
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-----KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKD 113 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-----~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d 113 (773)
.|+|+|....--+.....+.+||||+|++++. +.+|+++++|+||+|||+|.|.+.+ ...|.|.|||.| +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---d 78 (123)
T d1bdya_ 4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---E 78 (123)
T ss_dssp EEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET---T
T ss_pred eEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc---c
Confidence 45555555433333455789999999999652 4678889999999999999999976 468999999975 7
Q ss_pred eeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEe
Q 004109 114 DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (773)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (773)
+++|.+.+.+.++...........+.|++|.. .|+|++++.|.
T Consensus 79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~------~Gkl~l~v~~f 121 (123)
T d1bdya_ 79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP------QAKVLMCVQYF 121 (123)
T ss_dssp EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS------SCEEEEEEEEE
T ss_pred cccCccEEehhheeeccccCCCcccEEEeCCC------CEEEEEEEEEe
Confidence 89999999999987542222345678999963 48999998765
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=9.6e-16 Score=140.38 Aligned_cols=105 Identities=22% Similarity=0.341 Sum_probs=87.6
Q ss_pred eeeEEEEEEEEccCcccCCCCCccCCCCCccccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe----
Q 004109 322 FASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK---- 397 (773)
Q Consensus 322 ~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~---- 397 (773)
..|+|+++++. .+..|.|.|.|++|+||+.. +..+.+||||++.+.+.
T Consensus 5 ~~G~l~~sl~Y-------------------------~~~~~~L~V~V~~a~nL~~~---~~~~~~dpyv~v~l~~~~~~~ 56 (145)
T d1dqva2 5 DLGELNFSLCY-------------------------LPTAGLLTVTIIKASNLKAM---DLTGFSDPYVKASLISEGRRL 56 (145)
T ss_dssp CCCEEEEEEEE-------------------------ETTTTEEEEEEEEEESCCCC---SSSSCCCEEEEECCCTTCCTT
T ss_pred cceEEEEEEEE-------------------------cCCCCEEEEEEEEEeCCCCc---CCCCCcCceEEEEEccCCccc
Confidence 37999999874 23448999999999999876 44578999999998532
Q ss_pred -eeeeeeccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccc
Q 004109 398 -WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462 (773)
Q Consensus 398 -~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 462 (773)
..||++++++.||.|||.|.|.+.. ....|.|.|||++.++ ++++||.+.|++..+.
T Consensus 57 ~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~--------~~~~iG~~~i~l~~~~ 117 (145)
T d1dqva2 57 KKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIG--------HNEVIGVCRVGPEAAD 117 (145)
T ss_dssp SCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSS--------CCEEEEECCCSSCTTC
T ss_pred eeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCCCC--------CCcEEEEEEECchHcC
Confidence 3689999999999999999998763 2567999999998876 7899999999998763
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=3.3e-14 Score=125.29 Aligned_cols=106 Identities=12% Similarity=0.257 Sum_probs=86.5
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-----eeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCC
Q 004109 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-----WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCH 436 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~ 436 (773)
-.+.|.++.+..++. ..+.+||||+|.+++. ..+|+++++|+||+|||+|.|.+.+ ...+.|.|||+|
T Consensus 5 ~~~~~~~~~~~~~~~-----~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d- 77 (123)
T d1bdya_ 5 LRISFNSYELGSLQA-----EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA- 77 (123)
T ss_dssp EEEEEEEEECCTTCC-----CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET-
T ss_pred EEEEEEEeecccCCC-----CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc-
Confidence 356666677776653 3578999999999553 3678899999999999999999976 578999999973
Q ss_pred CCCCCCCCCCCCCccEEEEEecCccc-----cCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004109 437 LHGGDKAGGARDSRIGKVRIRLSTLE-----TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 437 ~~~~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
++++|.+.|++.++. .+.....|++|. +.|+|++.++|
T Consensus 78 -----------d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--------~~Gkl~l~v~~ 120 (123)
T d1bdya_ 78 -----------EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMCVQY 120 (123)
T ss_dssp -----------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEE
T ss_pred -----------ccccCccEEehhheeeccccCCCcccEEEeCC--------CCEEEEEEEEE
Confidence 679999999999983 466788999983 46999999997
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2e-12 Score=113.42 Aligned_cols=108 Identities=21% Similarity=0.325 Sum_probs=82.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeecc--CCCCCCeeecE-EEE-EecCCCCceEEEEEEeC
Q 004109 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHF--EKKTNPEWNQV-FAF-SKDRIQSSVLEVTVKDK 108 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~------~~~~T~~~--~~~~nP~WnE~-f~f-~v~~~~~~~l~i~V~d~ 108 (773)
.|.|+|++|++|+.. ++||||+|++-| .+.+|++. .++.||.|||+ |.| .+..+....|.|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 689999999999754 479999999832 33445443 67899999976 444 34544556899999998
Q ss_pred CCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCce-eeEEEEEEEE
Q 004109 109 DFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWM 161 (773)
Q Consensus 109 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~ 161 (773)
+ |++||++.++|..+..+ .+|++|.+..|+.. .+.|.+.+.+
T Consensus 78 d---~~~lG~~~ipl~~l~~G--------yR~vpL~~~~g~~l~~~~L~v~i~~ 120 (122)
T d2zkmx2 78 G---NKFLGHRIIPINALNSG--------YHHLCLHSESNMPLTMPALFIFLEM 120 (122)
T ss_dssp T---TEEEEEEEEEGGGBCCE--------EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred C---CCEEEEEEEEcccCcCC--------ceEEEccCCCcCCCCCceEEEEEEE
Confidence 5 79999999999999754 48899999888753 4566666543
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=6e-11 Score=103.74 Aligned_cols=94 Identities=27% Similarity=0.462 Sum_probs=72.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CEEEEeecc-cCCCCCccccce-EEE-EeeCCCCCeEEEEEEEc
Q 004109 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLG------NQALRTRVS-ASRTINPMWNED-LMF-VAAEPFEEHLILTVEDR 271 (773)
Q Consensus 201 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~------~~~~kT~~~-~~~t~nP~wne~-f~f-~~~~~~~~~l~i~V~d~ 271 (773)
.|+|+|++|++|+..+ .||||++.+- .++.+|++. ++++.||.|||. |.| .+..+....|.|.|||+
T Consensus 2 tl~V~Visaq~L~~~~----~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSSC----CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCCC----CCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 4899999999998653 7999999993 244555553 445899999987 444 34555556899999997
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceEEEcccC
Q 004109 272 VAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (773)
Q Consensus 272 ~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~ 309 (773)
+ |++||++.+|++.+.. ..++++|.+.
T Consensus 78 d----~~~lG~~~ipl~~l~~-------GyR~vpL~~~ 104 (122)
T d2zkmx2 78 G----NKFLGHRIIPINALNS-------GYHHLCLHSE 104 (122)
T ss_dssp T----TEEEEEEEEEGGGBCC-------EEEEEEEECT
T ss_pred C----CCEEEEEEEEcccCcC-------CceEEEccCC
Confidence 4 7899999999998863 4578888875
|