Your job contains 1 sequence.
>004110
MKDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHK
AHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVE
SLEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSN
SDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFD
NTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATA
VPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSI
DSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQV
QQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASL
QQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIH
EDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGA
IGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQ
APIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR
HEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004110
(773 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2172389 - symbol:AT5G18230 species:3702 "Arabi... 775 1.1e-150 2
UNIPROTKB|O75175 - symbol:CNOT3 "CCR4-NOT transcription c... 426 3.4e-61 3
UNIPROTKB|F6XXD6 - symbol:CNOT3 "Uncharacterized protein"... 426 5.5e-61 3
FB|FBgn0033029 - symbol:l(2)NC136 "lethal (2) NC136" spec... 440 1.5e-60 3
MGI|MGI:2385261 - symbol:Cnot3 "CCR4-NOT transcription co... 426 2.7e-60 2
UNIPROTKB|E1BCS1 - symbol:CNOT3 "Uncharacterized protein"... 426 4.1e-60 3
RGD|1304771 - symbol:Cnot3 "CCR4-NOT transcription comple... 426 7.2e-60 2
UNIPROTKB|E2R344 - symbol:CNOT3 "Uncharacterized protein"... 412 2.0e-59 3
DICTYBASE|DDB_G0272056 - symbol:DDB_G0272056 "putative CC... 431 2.1e-59 4
ZFIN|ZDB-GENE-040927-6 - symbol:cnot3a "CCR4-NOT transcri... 402 1.1e-57 2
ASPGD|ASPL0000074489 - symbol:AN4585 species:162425 "Emer... 389 3.7e-52 2
POMBASE|SPAC1B3.05 - symbol:not3 "CCR4-Not complex subuni... 355 1.5e-51 2
WB|WBGene00003826 - symbol:ntl-3 species:6239 "Caenorhabd... 328 1.6e-42 3
UNIPROTKB|G5EFX8 - symbol:ntl-3 "Protein NTL-3, isoform a... 328 1.6e-42 3
ZFIN|ZDB-GENE-030131-5838 - symbol:cnot3b "CCR4-NOT trans... 259 1.1e-37 3
UNIPROTKB|H0Y5X7 - symbol:CNOT3 "CCR4-NOT transcription c... 340 7.0e-32 2
UNIPROTKB|F1RNH3 - symbol:CNOT3 "Uncharacterized protein"... 257 1.5e-31 3
CGD|CAL0002492 - symbol:NOT5 species:5476 "Candida albica... 198 4.0e-21 2
UNIPROTKB|Q5A755 - symbol:NOT5 "Potential mRNA deadenylas... 198 4.0e-21 2
UNIPROTKB|H7C148 - symbol:CNOT3 "CCR4-NOT transcription c... 253 3.9e-19 1
SGD|S000001300 - symbol:NOT3 "Component of the CCR4-NOT t... 169 3.2e-16 3
UNIPROTKB|H7C5J4 - symbol:CNOT3 "CCR4-NOT transcription c... 195 2.1e-14 1
SGD|S000006276 - symbol:NOT5 "Component of the CCR4-NOT t... 123 1.0e-11 3
CGD|CAL0005191 - symbol:orf19.6075 species:5476 "Candida ... 157 2.5e-10 1
UNIPROTKB|F1MID5 - symbol:CNOT2 "Uncharacterized protein"... 153 3.8e-09 2
UNIPROTKB|F1SH40 - symbol:CNOT2 "Uncharacterized protein"... 154 5.2e-09 2
MGI|MGI:1919318 - symbol:Cnot2 "CCR4-NOT transcription co... 153 6.6e-09 2
UNIPROTKB|E2QSF5 - symbol:CNOT2 "Uncharacterized protein"... 153 6.6e-09 2
UNIPROTKB|Q9NZN8 - symbol:CNOT2 "CCR4-NOT transcription c... 153 6.6e-09 2
UNIPROTKB|F1M3V0 - symbol:Cnot2 "Protein Cnot2" species:1... 153 6.9e-09 3
UNIPROTKB|F1LUT7 - symbol:Cnot2 "Protein Cnot2" species:1... 153 7.0e-09 2
SGD|S000002324 - symbol:CDC36 "Component of the CCR4-NOT ... 143 7.8e-09 1
UNIPROTKB|F1LY92 - symbol:Cnot2 "Protein Cnot2" species:1... 153 9.8e-09 3
UNIPROTKB|H0YHT6 - symbol:CNOT2 "CCR4-NOT transcription c... 142 1.0e-08 1
UNIPROTKB|F8VV52 - symbol:CNOT2 "CCR4-NOT transcription c... 153 2.0e-08 3
UNIPROTKB|E1BCE7 - symbol:CNOT2 "Uncharacterized protein"... 153 2.1e-08 3
ZFIN|ZDB-GENE-070410-70 - symbol:zgc:162316 "zgc:162316" ... 162 2.1e-08 2
UNIPROTKB|Q5ZKI3 - symbol:CNOT2 "Uncharacterized protein"... 153 3.1e-08 2
RGD|1311672 - symbol:Cnot2 "CCR4-NOT transcription comple... 142 5.6e-08 3
UNIPROTKB|Q52JK6 - symbol:VIP2 "Probable NOT transcriptio... 154 3.2e-07 2
TAIR|locus:505006107 - symbol:NOT2a "Negative on TATA les... 134 4.1e-06 3
FB|FBgn0017550 - symbol:Rga "Regena" species:7227 "Drosop... 109 1.1e-05 2
TAIR|locus:2174259 - symbol:VIP2 "VIRE2 interacting prote... 132 1.5e-05 2
DICTYBASE|DDB_G0284577 - symbol:DDB_G0284577 "putative CC... 122 2.3e-05 2
POMBASE|SPCC4G3.15c - symbol:not2 "CCR4-Not complex subun... 129 3.2e-05 1
UNIPROTKB|H7C3F5 - symbol:CNOT3 "CCR4-NOT transcription c... 101 0.00025 1
WB|WBGene00019273 - symbol:H43E16.1 species:6239 "Caenorh... 128 0.00032 1
WB|WBGene00003825 - symbol:ntl-2 species:6239 "Caenorhabd... 120 0.00064 1
UNIPROTKB|Q10923 - symbol:ntl-2 "Protein NTL-2, isoform a... 120 0.00064 1
>TAIR|locus:2172389 [details] [associations]
symbol:AT5G18230 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
EMBL:CP002688 GO:GO:0006355 KO:K12580 OMA:ESIYHLP IPI:IPI00939040
RefSeq:NP_001154716.1 UniGene:At.7555 ProteinModelPortal:F4JWJ7
PRIDE:F4JWJ7 EnsemblPlants:AT5G18230.2 GeneID:831941
KEGG:ath:AT5G18230 Uniprot:F4JWJ7
Length = 845
Score = 775 (277.9 bits), Expect = 1.1e-150, Sum P(2) = 1.1e-150
Identities = 156/289 (53%), Positives = 189/289 (65%)
Query: 487 IHQQSSQQTLMSGGQKD-ADVSHLKVXXXXXXXXXXXXXXXXXXXXXGLGKNLIHEDDLK 545
+ QQS+ + G Q ADV H++ K + EDD K
Sbjct: 570 LQQQSNAMSQQLGQQPSVADVDHVR------NDDQSQQNLPDDSASIAASKAIQSEDDSK 623
Query: 546 APYAIDSSTGVSASLTEPAQVVRDTDXXXXXXXXXXXXXXXXXVIGRRSVSDLGAIGDSL 605
+ D+ +G+ + + +P QV D VIGRRS S+LGAIGD
Sbjct: 624 VLF--DTPSGMPSYMLDPVQVSSGPDFSPGQPIQPGQSSSSLGVIGRRSNSELGAIGDP- 680
Query: 606 SGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS 665
+ V G MHDQM+N+QMLE+AFYK PQP DSER R Y PR+PA+TP ++PQ QAPI++
Sbjct: 681 --SAV--GPMHDQMHNLQMLEAAFYKRPQPSDSERPRPYSPRNPAITPQTFPQTQAPIIN 736
Query: 666 NPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPK 725
NP WERL D+YGTDTLFFAFYYQQN+YQQYLAAKELKKQSWRYHRK+NTWFQRH+EPK
Sbjct: 737 NPLLWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQRHKEPK 796
Query: 726 VANDEFEQGTYVYFDFHIANDDLQHG-WCQRIKTEFTFEYNYLEDELIV 773
+A DE+EQG YVYFDF D+ Q G WCQRIK EFTFEY+YLEDEL+V
Sbjct: 797 IATDEYEQGAYVYFDFQTPKDENQEGGWCQRIKNEFTFEYSYLEDELVV 845
Score = 717 (257.5 bits), Expect = 1.1e-150, Sum P(2) = 1.1e-150
Identities = 160/270 (59%), Positives = 190/270 (70%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAH 62
DPKEKAKSETRDWLNN+VSELESQIDSFEAELEGL+VKKGKTRPPRLTHLETSITRHK H
Sbjct: 124 DPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRHKDH 183
Query: 63 IMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESL 122
I+KLELILRLLDNDELSPEQVNDVKD L+DYVERNQDDF+EFSDVDELY LPLD+VE L
Sbjct: 184 IIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEVEGL 243
Query: 123 EDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSNSD 182
EDLVT GP LVKG Q+ + + TH Q E+ EDT+ DS+++
Sbjct: 244 EDLVTAGP--LVKGTPLSMKSSLAASAS-QVRSISLPTHHQ-----EKTEDTSLPDSSAE 295
Query: 183 VAARTPPAKS-SGVGSTASTPAVGPATPISINVPAQTLSNASNT-SPVLPGSSSVRGVFD 240
+ +TPP K+ +G+ S STPA G P S+NVPA +SN S T S +P +S+ +
Sbjct: 296 MVPKTPPPKNGAGLHSAPSTPAGG--RP-SLNVPAGNVSNTSVTLSTSIPTQTSIESM-G 351
Query: 241 NTGPISSSPP--VNLTSSTKEEDVGNFPGR 268
+ P+++ L S V + P R
Sbjct: 352 SLSPVAAKEEDATTLPSRKPPSSVADTPLR 381
Score = 523 (189.2 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 148/354 (41%), Positives = 184/354 (51%)
Query: 256 STKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSD 315
+ KEED P R+ S+ D + G G + +P+NG+ + ++
Sbjct: 357 AAKEEDATTLPSRKPPSSVADTPLRGIG-RVGIPNQPQPSQPPSPIPANGSRISATSAAE 415
Query: 316 VAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRV 375
VAKRNI+G E VQ L SPLS +M+L AKGNDGT S DSN G+ A GR
Sbjct: 416 VAKRNIMGVESN------VQPLTSPLS-KMVLPPTAKGNDGTAS-DSN-PGDVAASIGRA 466
Query: 376 FTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPL 433
F+PS+ G QWR G+ FQ+QNE RGRTEIAPDQREKF GH NLLG+P
Sbjct: 467 FSPSIVSGSQWRPGSPFQSQNET--VRGRTEIAPDQREKFLQRLQQVQQ-GHGNLLGIPS 523
Query: 434 --GGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQ 489
GGN KQFSSQQ NPLLQQ SSIS LG+GVQAPG N ++SASLQQQ N + Q
Sbjct: 524 LSGGNEKQFSSQQQNPLLQQ----SSSISPHGSLGIGVQAPGFNVMSSASLQQQSNAMSQ 579
Query: 490 QSSQQTLMSGGQKDADVSHLKVXXXXXXXXXXXXXXXXXXXXXGLGKNLIHEDDLKAPYA 549
Q QQ + ADV H++ K + EDD K +
Sbjct: 580 QLGQQPSV------ADVDHVR------NDDQSQQNLPDDSASIAASKAIQSEDDSKVLF- 626
Query: 550 IDSSTGVSASLTEPAQVVRDTDXXXXXXXXXXXXXXXXXVIGRRSVSDLGAIGD 603
D+ +G+ + + +P QV D VIGRRS S+LGAIGD
Sbjct: 627 -DTPSGMPSYMLDPVQVSSGPDFSPGQPIQPGQSSSSLGVIGRRSNSELGAIGD 679
Score = 70 (29.7 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 34/136 (25%), Positives = 53/136 (38%)
Query: 155 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSS-----GVGSTASTPAVGPATP 209
+T I T + S+ A ++ + + +R PP+ + G+G P+ P
Sbjct: 338 STSIPTQTSIESMGSLSPVAAKEEDATTLPSRKPPSSVADTPLRGIGRVGIPNQPQPSQP 397
Query: 210 ISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS------PPV-----NLTSSTK 258
S +PA S S TS ++ GV N P++S PP S +
Sbjct: 398 PS-PIPANG-SRISATSAAEVAKRNIMGVESNVQPLTSPLSKMVLPPTAKGNDGTASDSN 455
Query: 259 EEDVGNFPGRRSSPSL 274
DV GR SPS+
Sbjct: 456 PGDVAASIGRAFSPSI 471
>UNIPROTKB|O75175 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
[GO:2000036 "regulation of stem cell maintenance" evidence=IMP]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 GO:GO:0000932
GO:GO:0000289 EMBL:AF180474 EMBL:AB014591 EMBL:AL133647
EMBL:BC016474 IPI:IPI00005015 IPI:IPI00186188 IPI:IPI00478453
PIR:T43456 RefSeq:NP_055331.1 UniGene:Hs.343571
ProteinModelPortal:O75175 DIP:DIP-40297N IntAct:O75175
MINT:MINT-1439009 STRING:O75175 PhosphoSite:O75175 PaxDb:O75175
PRIDE:O75175 Ensembl:ENST00000221232 Ensembl:ENST00000358389
Ensembl:ENST00000406403 Ensembl:ENST00000570333
Ensembl:ENST00000570863 Ensembl:ENST00000570970
Ensembl:ENST00000570997 Ensembl:ENST00000571055
Ensembl:ENST00000571119 Ensembl:ENST00000572058
Ensembl:ENST00000572589 Ensembl:ENST00000572598
Ensembl:ENST00000572852 Ensembl:ENST00000573388
Ensembl:ENST00000573528 Ensembl:ENST00000573769
Ensembl:ENST00000574556 Ensembl:ENST00000574815
Ensembl:ENST00000574965 Ensembl:ENST00000575585
Ensembl:ENST00000576314 Ensembl:ENST00000576558
Ensembl:ENST00000576765 Ensembl:ENST00000577005 GeneID:4849
KEGG:hsa:4849 UCSC:uc002qdj.2 CTD:4849 GeneCards:GC19P054641
HGNC:HGNC:7879 HPA:HPA006408 MIM:604910 neXtProt:NX_O75175
PharmGKB:PA26674 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 InParanoid:O75175 KO:K12580 OMA:IFYYLEP
OrthoDB:EOG41JZDJ PhylomeDB:O75175 GenomeRNAi:4849 NextBio:18674
ArrayExpress:O75175 Bgee:O75175 CleanEx:HS_CNOT3
Genevestigator:O75175 GermOnline:ENSG00000088038 Uniprot:O75175
Length = 753
Score = 426 (155.0 bits), Expect = 3.4e-61, Sum P(3) = 3.4e-61
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 617 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 676
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667
Query: 677 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 736
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724
Query: 737 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+YFD+ W QR K FTFEY YLED
Sbjct: 725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749
Score = 261 (96.9 bits), Expect = 3.4e-61, Sum P(3) = 3.4e-61
Identities = 100/345 (28%), Positives = 145/345 (42%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSIT 57
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 115 DPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIE 174
Query: 58 RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPL 116
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L
Sbjct: 175 KHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDL 231
Query: 117 DKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTAS 176
+ + + LV PP + + + T+ E ED
Sbjct: 232 EDIP--QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDKK 287
Query: 177 QDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPGS 232
+ ++D PAK S V S +PAV P P S PA ++A +T+P G
Sbjct: 288 RGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYP-SGPPPA---ASALSTTPGNNGV 343
Query: 233 SSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD-----VRVMGRGGXXX 287
+ GP +S P + + + P S PS T V+ G GG
Sbjct: 344 PAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGS 403
Query: 288 XXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSG 332
++A G S V + AE L SSG
Sbjct: 404 GGGGSSSSSNSSAGGGAGKQNGATSYSSVVADS--PAEVALSSSG 446
Score = 72 (30.4 bits), Expect = 2.6e-40, Sum P(3) = 2.6e-40
Identities = 29/85 (34%), Positives = 39/85 (45%)
Query: 179 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPG 231
S S V A +P A SS G+ AS+ A+GP + N P T S +P V PG
Sbjct: 428 SYSSVVADSPAEVALSSSGGNNASSQALGPPSGPH-NPPPSTSKEPSAAAPTGAGGVAPG 486
Query: 232 SSSVRGVFDNTGPISSSPPVNLTSS 256
S + G P+ +PP + T S
Sbjct: 487 SGNNSGGPSLLVPLPVNPPSSPTPS 511
Score = 48 (22.0 bits), Expect = 3.4e-61, Sum P(3) = 3.4e-61
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 434 GGNKQFSSQQNPLLQQFN---SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQ 490
GGN S P N S SA A G G APG + + P P++
Sbjct: 446 GGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPP 505
Query: 491 SS 492
SS
Sbjct: 506 SS 507
Score = 44 (20.5 bits), Expect = 2.1e-37, Sum P(3) = 2.1e-37
Identities = 23/98 (23%), Positives = 33/98 (33%)
Query: 155 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINV 214
+ V + +V G + +SQ PP +S S A+ G P S N
Sbjct: 431 SVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNN 490
Query: 215 PAQTLSNASNTSPVLPGSSSVRGVFDN--TGPISSSPP 250
+ PV P SS D G + + PP
Sbjct: 491 SGGP--SLLVPLPVNPPSSPTPSFSDAKAAGALLNGPP 526
Score = 37 (18.1 bits), Expect = 4.8e-60, Sum P(3) = 4.8e-60
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 430 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 470
G L G QFS+ + S S++ +A + G++ P
Sbjct: 519 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 559
>UNIPROTKB|F6XXD6 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 CTD:4849 KO:K12580 GeneTree:ENSGT00390000014743
OMA:ESIYHLP EMBL:AAEX03000741 Ensembl:ENSCAFT00000004262
RefSeq:XP_541428.3 GeneID:484312 KEGG:cfa:484312 Uniprot:F6XXD6
Length = 753
Score = 426 (155.0 bits), Expect = 5.5e-61, Sum P(3) = 5.5e-61
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 617 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 676
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667
Query: 677 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 736
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724
Query: 737 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+YFD+ W QR K FTFEY YLED
Sbjct: 725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749
Score = 259 (96.2 bits), Expect = 5.5e-61, Sum P(3) = 5.5e-61
Identities = 95/352 (26%), Positives = 142/352 (40%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSIT 57
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 115 DPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIE 174
Query: 58 RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPL 116
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L
Sbjct: 175 KHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDL 231
Query: 117 DKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTAS 176
+ + + LV PP + + + T+ E ED
Sbjct: 232 EDIP--QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDKK 287
Query: 177 QDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVR 236
+ ++D PAK+ ++ PA P S ++A +T+P G+S+
Sbjct: 288 RGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPSYPPGPPPATSALSTTPGNNGASTPA 347
Query: 237 GVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR---VMGRGGXXXXXXXXX 293
GP +S P + + + P S S T R V GG
Sbjct: 348 APTSALGPKASPAPSHSSGTPAPYAQAVAPPAPSGSSTTQPRPPSVQPGGGGGSGGGGSG 407
Query: 294 XXXXATAVPSNG---NLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLS 342
+ + G GA S VA A G SG + P S
Sbjct: 408 GSGSSNSSGGGGAGKQNGATSYSSVVADSPAEVALSSSGGSGASSQALGPPS 459
Score = 76 (31.8 bits), Expect = 9.9e-41, Sum P(3) = 9.9e-41
Identities = 31/88 (35%), Positives = 40/88 (45%)
Query: 179 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPG 231
S S V A +P A SS GS AS+ A+GP + N P T S +P V PG
Sbjct: 428 SYSSVVADSPAEVALSSSGGSGASSQALGPPSGPH-NPPPSTSKEPSAAAPAGAGGVAPG 486
Query: 232 SSSVRGVFDNTGPISSSPPVNLTSSTKE 259
S + G P+ +PP + T S E
Sbjct: 487 SGNNTGGPSLLVPLPVNPPSSPTPSFSE 514
Score = 48 (22.0 bits), Expect = 5.5e-61, Sum P(3) = 5.5e-61
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 440 SSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSS 492
S NP S+ S +A AG G GV APG + T P P++ SS
Sbjct: 459 SGPHNP--PPSTSKEPSAAAPAGAG-GV-APGSGNNTGGPSLLVPLPVNPPSS 507
Score = 37 (18.1 bits), Expect = 7.8e-60, Sum P(3) = 7.8e-60
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 430 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 470
G L G QFS+ + S S++ +A + G++ P
Sbjct: 519 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 559
>FB|FBgn0033029 [details] [associations]
symbol:l(2)NC136 "lethal (2) NC136" species:7227 "Drosophila
melanogaster" [GO:0006351 "transcription, DNA-dependent"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 EMBL:AE013599
GO:GO:0005634 GO:GO:0005737 GO:GO:0022008 GO:GO:0006355
GO:GO:0030014 GO:GO:0000289 eggNOG:COG5665 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AY069428
EMBL:BT083390 RefSeq:NP_610176.1 UniGene:Dm.2133 IntAct:Q7K126
STRING:Q7K126 EnsemblMetazoa:FBtr0086062 EnsemblMetazoa:FBtr0331970
GeneID:35501 KEGG:dme:Dmel_CG8426 UCSC:CG8426-RA
FlyBase:FBgn0033029 InParanoid:Q7K126 OrthoDB:EOG4NVX23
ChiTaRS:l(2)NC136 GenomeRNAi:35501 NextBio:793729 Uniprot:Q7K126
Length = 844
Score = 440 (159.9 bits), Expect = 1.5e-60, Sum P(3) = 1.5e-60
Identities = 84/153 (54%), Positives = 104/153 (67%)
Query: 618 QMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDS 677
QM QM+E+A+Y LPQP D+E+ ++Y R P +TP YPQ Q PI F++RLS
Sbjct: 703 QM-QFQMMEAAYYHLPQPMDTEKLQTYFHRAPVLTPSHYPQAQMPIYDTVEFYQRLS--- 758
Query: 678 YGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYV 737
T+TLFF FYY + + QYLAAK LKKQSWR+H KY WFQRHEEPK+ ND++EQGTY+
Sbjct: 759 --TETLFFVFYYMEGSKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKIINDDYEQGTYI 816
Query: 738 YFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 770
YFD+ W QR K FTFEY YLED+
Sbjct: 817 YFDYE--------KWSQRKKEGFTFEYKYLEDK 841
Score = 254 (94.5 bits), Expect = 1.5e-60, Sum P(3) = 1.5e-60
Identities = 90/329 (27%), Positives = 145/329 (44%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKT----RPPRLTHLETSITR 58
DP ++ K + R+WL + +S L+ QID +E+E+E L K K + R+ L + R
Sbjct: 120 DPAQRIKDDARNWLTSSISSLQIQIDQYESEIESLLAGKKKRLDRDKQERMDDLRGKLDR 179
Query: 59 HKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDV---DEL 110
HK HI KLE +LRLLDND + EQVN +KD +E Y++ +Q+ DFEE + D+ DE+
Sbjct: 180 HKFHITKLETLLRLLDNDGVEAEQVNKIKDDVEYYIDSSQEPDFEENEFIYDDIIGLDEV 239
Query: 111 YHLLPLDKVESLEDLVTIGPPGLVK--GXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQ 168
L +S T G P V G S ++
Sbjct: 240 -ELSGTATTDSNNSNETSGSPSSVTSGGSPSQSPVTVQQILNTSSQGAASSGSSAASAAL 298
Query: 169 EQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPA--QTLSNASNTS 226
Q + TA+Q + ++V + + +S +T++ PA G + A + S+ SN
Sbjct: 299 FQQQLTAAQSNGNNVGYASDTSAASSSATTSTDPAGGTVAVNCVGGLADKRNKSSESNAL 358
Query: 227 PVLPGSSS-VRGV-FDNTG--PISSSPPVN-LTSSTKEEDVGNFPGRRSSPSLTDVRVMG 281
+ P ++ T P+SS VN + SST ++ P S + + ++
Sbjct: 359 KLKPQPHQLIKPTPVRATAKLPLSSDTQVNKIVSSTPSKNQQQLPTAASIVATSAMQSQS 418
Query: 282 RGGXXXXXXXXXXXXXATAVPSNGNLGAV 310
G A++ + GN AV
Sbjct: 419 SIGSCSSTGGTGASQSASSGNNPGNNPAV 447
Score = 51 (23.0 bits), Expect = 2.3e-39, Sum P(3) = 2.3e-39
Identities = 18/82 (21%), Positives = 33/82 (40%)
Query: 165 TSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPIS-INVPAQTLSNAS 223
T + + +N V P SG+ + A++ V AT +S NV Q++ +
Sbjct: 429 TGASQSASSGNNPGNNPAVQPNAPTPGQSGIAAAAASTNVVSATIVSSANVQGQSVIQPT 488
Query: 224 NTSPVLPGSSSVRGVFDNTGPI 245
T + + +N GP+
Sbjct: 489 PTIAFAAVAKHNTSLLEN-GPV 509
Score = 49 (22.3 bits), Expect = 3.3e-39, Sum P(2) = 3.3e-39
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 159 STHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 213
+ QQ+TS Q+Q Q N+ +AA T + GS A PIS N
Sbjct: 618 TNQQQLTSQQQQ------QLQNNSLAATTGSNNGTSTGSGLMNVANATGQPISGN 666
Score = 44 (20.5 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 356 GTGSIDSNNAGET 368
GT + DSNN+ ET
Sbjct: 243 GTATTDSNNSNET 255
Score = 43 (20.2 bits), Expect = 1.6e-38, Sum P(3) = 1.6e-38
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 302 PSNGNLGAVPLVSDVAKRNILGAEER-LGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSI 360
PS+ G P S V + IL + SSG + + ++ +Q+ N G S
Sbjct: 259 PSSVTSGGSPSQSPVTVQQILNTSSQGAASSGSSAASAALFQQQLTAAQSNGNNVGYAS- 317
Query: 361 DSNNAGET 368
D++ A +
Sbjct: 318 DTSAASSS 325
Score = 37 (18.1 bits), Expect = 1.5e-60, Sum P(3) = 1.5e-60
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 437 KQFSSQQNPLLQQFNSQGSSISAQ 460
+Q SQ++ LLQ FNS+ ++ Q
Sbjct: 600 RQPQSQKS-LLQHFNSETNTNQQQ 622
>MGI|MGI:2385261 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10090 "Mus musculus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:2000036 "regulation of stem cell
maintenance" evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
MGI:MGI:2385261 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0000932 CTD:4849 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 KO:K12580 OrthoDB:EOG41JZDJ EMBL:BC030332
EMBL:BC053437 EMBL:BC141041 IPI:IPI00169667 RefSeq:NP_666288.1
UniGene:Mm.358731 ProteinModelPortal:Q8K0V4 DIP:DIP-46844N
IntAct:Q8K0V4 STRING:Q8K0V4 PhosphoSite:Q8K0V4 PaxDb:Q8K0V4
PRIDE:Q8K0V4 Ensembl:ENSMUST00000038913 GeneID:232791
KEGG:mmu:232791 UCSC:uc009evl.2 GeneTree:ENSGT00390000014743
InParanoid:B2RUA7 OMA:ESIYHLP NextBio:381230 Bgee:Q8K0V4
CleanEx:MM_CNOT3 Genevestigator:Q8K0V4
GermOnline:ENSMUSG00000035632 Uniprot:Q8K0V4
Length = 751
Score = 426 (155.0 bits), Expect = 2.7e-60, Sum P(2) = 2.7e-60
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 617 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 676
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665
Query: 677 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 736
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722
Query: 737 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+YFD+ W QR K FTFEY YLED
Sbjct: 723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747
Score = 262 (97.3 bits), Expect = 2.7e-60, Sum P(2) = 2.7e-60
Identities = 107/389 (27%), Positives = 156/389 (40%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSIT 57
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 115 DPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIE 174
Query: 58 RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPL 116
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L
Sbjct: 175 KHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDL 231
Query: 117 DKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTAS 176
+ + + LV PP + + + T+ E ED
Sbjct: 232 EDIP--QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDKK 287
Query: 177 QDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPGS 232
+ ++D PAK S V S +PAV P P P T S S+T P G+
Sbjct: 288 RGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSG---PPPTTSALSST-PGNNGA 343
Query: 233 SSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGR-------GGX 285
S+ GP +S P + + + P S PS R GG
Sbjct: 344 STPAAPTSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGS 403
Query: 286 XXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSL-------- 337
A NG +V+D L + GSS Q+L
Sbjct: 404 GGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSSG--GSSASSQALGPTSGPHN 461
Query: 338 VSPLSNRMILSQAAKGNDGTGSIDSNNAG 366
+P +++ + A G S NN+G
Sbjct: 462 PAPSTSKESSTAAPSGAGNVASGSGNNSG 490
Score = 172 (65.6 bits), Expect = 8.0e-51, Sum P(2) = 8.0e-51
Identities = 114/502 (22%), Positives = 182/502 (36%)
Query: 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKKG-KTRPPRLTHLETSITRHKAHIMKLEL 68
+ T D LN V + ES+++S + KKG K + R+ L+ I +H+ H+ LE
Sbjct: 129 TNTIDTLNMQVDQFESEVESLSVQTRK---KKGDKDKQDRIEGLKRHIEKHRYHVRMLET 185
Query: 69 ILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKV-ESLEDLV 126
ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L+ + ++L +
Sbjct: 186 ILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDLEDIPQAL--VA 240
Query: 127 TIGPP-GLVKGXXXXXXXXXXXXXXXQMP---ATVISTHQQVTSVQEQGEDTASQDSNSD 182
T P ++ P + T + +++G T S+ S S
Sbjct: 241 TSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSP 300
Query: 183 VAARTPPAKSSGVGSTASTPAVGPA-TPISINVPAQTLSNASNTSPVLPGSSSVRGVFDN 241
+ P S+ + + P P+ P + + + T N ++P P +S G +
Sbjct: 301 AKNGSKPVHSNQHPQSPAVPPTYPSGPPPTTSALSSTPGNNGASTPAAP--TSALGPKAS 358
Query: 242 TGPI-SSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATA 300
P +S P + + + P GG A
Sbjct: 359 PAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGSGGSSSNSNSGTGGGA 418
Query: 301 VPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSL--------VSPLSNRMILSQAAK 352
NG +V+D L + GSS Q+L +P +++ + A
Sbjct: 419 GKQNGATSYSSVVADSPAEVTLSSSG--GSSASSQALGPTSGPHNPAPSTSKESSTAAPS 476
Query: 353 GNDGTGSIDSNNAGETVAMAGRVF------TPSMGMQWRTGNSFQNQNEPGQFRGRTEI- 405
G S NN+G + TPS G N P QF EI
Sbjct: 477 GAGNVASGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTLL---NGPPQFSTTPEIK 533
Query: 406 APDQREKFXXXXXXXXXXG--HSNLLGMPLGGNKQFSSQQN--PLLQQFNSQGSSISAQA 461
AP+ + + L S + P Q Q S ++
Sbjct: 534 APEPLSSLKSMAERAAISSGIEDPVPTLHLTDRDIILSSTSAPPTSSQPPLQLSEVNIP- 592
Query: 462 GLGLGVQAPGMNSVTSASLQQQ 483
L LGV G S+T L QQ
Sbjct: 593 -LSLGVCPLGPVSLTKEQLYQQ 613
>UNIPROTKB|E1BCS1 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:DAAA02047818
IPI:IPI00685943 RefSeq:XP_002695478.1 Ensembl:ENSBTAT00000019836
GeneID:527305 KEGG:bta:527305 NextBio:20874556 Uniprot:E1BCS1
Length = 744
Score = 426 (155.0 bits), Expect = 4.1e-60, Sum P(3) = 4.1e-60
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 617 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 676
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 601 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 658
Query: 677 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 736
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 659 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 715
Query: 737 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+YFD+ W QR K FTFEY YLED
Sbjct: 716 IYFDYE--------KWGQRKKEGFTFEYRYLED 740
Score = 255 (94.8 bits), Expect = 4.1e-60, Sum P(3) = 4.1e-60
Identities = 80/258 (31%), Positives = 118/258 (45%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSIT 57
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 115 DPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIE 174
Query: 58 RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPL 116
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L
Sbjct: 175 KHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDL 231
Query: 117 DKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTAS 176
+ + + LV PP + + + T+ E ED
Sbjct: 232 EDIP--QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDKK 287
Query: 177 QDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNA--SNTSPVLP 230
+ ++D PAK S V S+ +PAV P+ P A LS SN +P
Sbjct: 288 RGRSTDSEVSQSPAKNGSKPVHSSQHPQSPAVPPSYPPGPPPAASALSATPGSNGAPAAA 347
Query: 231 GSSSVRGVFDNTGPISSS 248
+S G + P S+
Sbjct: 348 APASALGAKASPAPSHSA 365
Score = 79 (32.9 bits), Expect = 4.1e-41, Sum P(3) = 4.1e-41
Identities = 31/88 (35%), Positives = 40/88 (45%)
Query: 179 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPV-----LPG 231
S S V A +P A SS GS+ + A+GP P N P T S T+PV PG
Sbjct: 419 SYSSVVADSPAEAALSSTGGSSTGSQALGPP-PGPHNPPPSTAKEPSATAPVGAGGVAPG 477
Query: 232 SSSVRGVFDNTGPISSSPPVNLTSSTKE 259
S + G P+ +PP + T S E
Sbjct: 478 SGNNAGGPSLLVPLPVNPPSSPTPSFSE 505
Score = 44 (20.5 bits), Expect = 7.6e-18, Sum P(2) = 7.6e-18
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 646 PRHPAVTPPSYPQVQAP 662
P H A TP Y Q AP
Sbjct: 361 PSHSAGTPAPYAQAVAP 377
Score = 43 (20.2 bits), Expect = 4.1e-60, Sum P(3) = 4.1e-60
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 458 SAQAGLGLGVQAPGM-NSVTSASLQQQPNPIHQQSS 492
SA A +G G APG N+ SL P P++ SS
Sbjct: 464 SATAPVGAGGVAPGSGNNAGGPSLLV-PLPVNPPSS 498
Score = 37 (18.1 bits), Expect = 1.7e-59, Sum P(3) = 1.7e-59
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 430 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 470
G L G QFS+ + S S++ +A + G++ P
Sbjct: 510 GSLLNGPPQFSAAPEIKAPEPLSSLKSMAERAAISSGIEDP 550
>RGD|1304771 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
RGD:1304771 GO:GO:0005634 GO:GO:0006355 GO:GO:0000932 CTD:4849
KO:K12580 OrthoDB:EOG41JZDJ OMA:ESIYHLP EMBL:AC103574 EMBL:AC126217
IPI:IPI00192709 RefSeq:NP_001100941.2 UniGene:Rn.212216
Ensembl:ENSRNOT00000064411 GeneID:308311 KEGG:rno:308311
UCSC:RGD:1304771 NextBio:658574 ArrayExpress:D3ZXE8 Uniprot:D3ZXE8
Length = 751
Score = 426 (155.0 bits), Expect = 7.2e-60, Sum P(2) = 7.2e-60
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 617 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 676
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665
Query: 677 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 736
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722
Query: 737 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+YFD+ W QR K FTFEY YLED
Sbjct: 723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747
Score = 258 (95.9 bits), Expect = 7.2e-60, Sum P(2) = 7.2e-60
Identities = 120/437 (27%), Positives = 179/437 (40%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSIT 57
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 115 DPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIE 174
Query: 58 RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPL 116
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L
Sbjct: 175 KHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDL 231
Query: 117 DKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTAS 176
+ + + LV PP + + + T+ E ED
Sbjct: 232 EDIP--QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDKK 287
Query: 177 QDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPGS 232
+ ++D PAK S V S +PAV P P S PA ++A +++P G+
Sbjct: 288 RGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYP-SGPPPA---TSALSSTPGNNGA 343
Query: 233 SSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGR-------GGX 285
S+ GP +S P + + + P S PS R GG
Sbjct: 344 STPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGS 403
Query: 286 XXXXXXXXXXXXATAVPSNGNLGAVPLVSD----VAKRNILGAE---ERLG-SSGMVQSL 337
A NG +V+D VA + G+ + LG +SG
Sbjct: 404 GGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVALSSSGGSSASSQALGPTSGPHNPA 463
Query: 338 VSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVF-----TPSMGMQWRTGNSFQN 392
S L + + G+ +GS +N+ G ++ + V TPS G
Sbjct: 464 PSTLKESSTAAPSGAGSVASGS-GNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTLL-- 520
Query: 393 QNEPGQFRGRTEI-APD 408
N P QF EI AP+
Sbjct: 521 -NGPPQFSTTPEIKAPE 536
Score = 174 (66.3 bits), Expect = 5.0e-51, Sum P(2) = 5.0e-51
Identities = 116/501 (23%), Positives = 188/501 (37%)
Query: 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKKG-KTRPPRLTHLETSITRHKAHIMKLEL 68
+ T D LN V + ES+++S + KKG K + R+ L+ I +H+ H+ LE
Sbjct: 129 TNTIDTLNMQVDQFESEVESLSVQTRK---KKGDKDKQDRIEGLKRHIEKHRYHVRMLET 185
Query: 69 ILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKV-ESLEDLV 126
ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L+ + ++L +
Sbjct: 186 ILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDLEDIPQAL--VA 240
Query: 127 TIGPP-GLVKGXXXXXXXXXXXXXXXQMP---ATVISTHQQVTSVQEQGEDTASQDSNSD 182
T P ++ P + T + +++G T S+ S S
Sbjct: 241 TSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSP 300
Query: 183 VAARTPPAKSSGVGSTASTPAVGPA-TPISINVPAQTLSNASNTSPVLPGSSSVRGVFDN 241
+ P S+ + + P P+ P + + + T N ++P P S+ G +
Sbjct: 301 AKNGSKPVHSNQHPQSPAVPPTYPSGPPPATSALSSTPGNNGASTPAAPPSAL--GPKAS 358
Query: 242 TGPI-SSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATA 300
P +S P + + + P GG A
Sbjct: 359 PAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGSGGSSSNSNSGTGGGA 418
Query: 301 VPSNGNLGAVPLVSD----VAKRNILGAE---ERLG-SSGMVQSLVSPLSNRMILSQAAK 352
NG +V+D VA + G+ + LG +SG S L + +
Sbjct: 419 GKQNGATSYSSVVADSPAEVALSSSGGSSASSQALGPTSGPHNPAPSTLKESSTAAPSGA 478
Query: 353 GNDGTGSIDSNNAGETVAMAGRVF-----TPSMGMQWRTGNSFQNQNEPGQFRGRTEI-A 406
G+ +GS +N+ G ++ + V TPS G N P QF EI A
Sbjct: 479 GSVASGS-GNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTLL---NGPPQFSTTPEIKA 534
Query: 407 PDQREKFXXXXXXXXXXG--HSNLLGMPLGGNKQFSSQQN--PLLQQFNSQGSSISAQAG 462
P+ + + L S + P Q Q S ++
Sbjct: 535 PEPLSSLKSMAERAAISSGIEDPVPTLHLTDRDIILSSTSAPPTSSQPPLQLSEVNIP-- 592
Query: 463 LGLGVQAPGMNSVTSASLQQQ 483
L LGV G S+T L QQ
Sbjct: 593 LSLGVCPLGPVSLTKEQLYQQ 613
>UNIPROTKB|E2R344 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 Ensembl:ENSCAFT00000004262 Uniprot:E2R344
Length = 710
Score = 412 (150.1 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 82/153 (53%), Positives = 100/153 (65%)
Query: 617 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 676
+Q+Y M E+A++ +P P DSER R++ PR+P TPP + Q+ P F++RLS
Sbjct: 568 EQLYQQAMEEAAWHHMPHPSDSERIRTF-PRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 624
Query: 677 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 736
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 625 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 681
Query: 737 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+YFD+ W QR K FTFEY YLED
Sbjct: 682 IYFDYE--------KWGQRKKEGFTFEYRYLED 706
Score = 247 (92.0 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 73/243 (30%), Positives = 114/243 (46%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSIT 57
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 115 DPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIE 174
Query: 58 RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPL 116
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L
Sbjct: 175 KHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDL 231
Query: 117 DKVESLEDLVTIGPPGL--VKGXXXXXXXXXXXXXXXQMP---ATVISTHQQVTSVQEQG 171
+ + + LV PP ++ P + T + +++G
Sbjct: 232 EDIP--QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRG 289
Query: 172 EDTASQDSNSDVAARTPPAKSSG-VGSTASTPAVGPATPISINVPAQTLSNASNTSPVLP 230
T S+ S S + P S+ S A P+ P P + + + T N ++P P
Sbjct: 290 RSTDSEVSQSPAKNGSKPVHSNQHPQSPALPPSYPPGPPPATSALSTTPGNNGASTPAAP 349
Query: 231 GSS 233
S+
Sbjct: 350 TSA 352
Score = 74 (31.1 bits), Expect = 4.6e-39, Sum P(3) = 4.6e-39
Identities = 30/86 (34%), Positives = 39/86 (45%)
Query: 181 SDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPGSS 233
S V A +P A SS GS AS+ A+GP + N P T S +P V PGS
Sbjct: 388 SSVVADSPAEVALSSSGGSGASSQALGPPSGPH-NPPPSTSKEPSAAAPAGAGGVAPGSG 446
Query: 234 SVRGVFDNTGPISSSPPVNLTSSTKE 259
+ G P+ +PP + T S E
Sbjct: 447 NNTGGPSLLVPLPVNPPSSPTPSFSE 472
Score = 59 (25.8 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 40/146 (27%), Positives = 52/146 (35%)
Query: 353 GNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFR------GRTEIA 406
GN+G S A T A+A R P G RT + G F G + +
Sbjct: 339 GNNGA----STPAAPTSALANRTAPPVSG---RTAGGWGGLGLAGSFHSLFPPPGYSSVV 391
Query: 407 PDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLG 466
D + S LG P G + NP S+ S +A AG G G
Sbjct: 392 ADSPAEVALSSSGGSGAS-SQALGPPSGPH-------NP--PPSTSKEPSAAAPAGAG-G 440
Query: 467 VQAPGMNSVTSASLQQQPNPIHQQSS 492
V APG + T P P++ SS
Sbjct: 441 V-APGSGNNTGGPSLLVPLPVNPPSS 465
Score = 43 (20.2 bits), Expect = 7.7e-36, Sum P(3) = 7.7e-36
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 188 PPAKSSGVGSTASTPAV-GPATPISINVPAQTLSNASNTSPVLPGSSS 234
PP + ++TP G +TP + P L+N T+P + G ++
Sbjct: 324 PPGPPPATSALSTTPGNNGASTPAA---PTSALAN--RTAPPVSGRTA 366
Score = 37 (18.1 bits), Expect = 4.1e-57, Sum P(3) = 4.1e-57
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 430 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 470
G L G QFS+ + S S++ +A + G++ P
Sbjct: 477 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 517
>DICTYBASE|DDB_G0272056 [details] [associations]
symbol:DDB_G0272056 "putative CCR4-NOT complex
subunit 3" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR007207
InterPro:IPR007282 InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153
PIRSF:PIRSF005290 dictyBase:DDB_G0272056 GO:GO:0005634
GO:GO:0006355 EMBL:AAFI02000007 eggNOG:COG5665 KO:K12580
RefSeq:XP_645358.1 ProteinModelPortal:Q55AA8
EnsemblProtists:DDB0219997 GeneID:8618247 KEGG:ddi:DDB_G0272056
InParanoid:Q55AA8 OMA:GHIKSEE Uniprot:Q55AA8
Length = 866
Score = 431 (156.8 bits), Expect = 2.1e-59, Sum P(4) = 2.1e-59
Identities = 83/157 (52%), Positives = 104/157 (66%)
Query: 614 GMHDQMY-NMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER 672
G + M M++ +F LP KD ER ++IPR+P P YPQ P+ +P +E+
Sbjct: 722 GFEEAMILTRHMMDISFKNLPDFKDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNVFEK 781
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFE 732
+D TLFF FY++Q TYQQY AAKELKKQ WRYH+KY TWF+RHEEPK +EFE
Sbjct: 782 FDID-----TLFFIFYFKQGTYQQYQAAKELKKQGWRYHKKYLTWFRRHEEPKEITNEFE 836
Query: 733 QGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
QGTYVYFD+ + GWCQR KTEFTFEY +LE+
Sbjct: 837 QGTYVYFDY-------ETGWCQRKKTEFTFEYRFLEE 866
Score = 205 (77.2 bits), Expect = 2.1e-59, Sum P(4) = 2.1e-59
Identities = 36/121 (29%), Positives = 72/121 (59%)
Query: 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMK 65
E AK+ + W + ++ L +Q++SF+ ELE + V+K KT R+ L+ HK H++
Sbjct: 126 EMAKTHVKTWASKAIATLRAQLESFDTELENIPVRKRKTESARVEQLQKFKNNHKYHLLA 185
Query: 66 LELILRLLDNDELSPEQVNDVKDLLEDYVER--NQDDFEEFSDVDELYHLLPLDKVESLE 123
LE +LR++D+D + +++ +KD +E Y++ +D +EE ++ +++ P + +E
Sbjct: 186 LEFLLRMMDDDRIPTDEIEKIKDSVECYIDSYTQEDTYEEPGEIYSIFNFKP-HNITDIE 244
Query: 124 D 124
D
Sbjct: 245 D 245
Score = 62 (26.9 bits), Expect = 2.1e-59, Sum P(4) = 2.1e-59
Identities = 23/89 (25%), Positives = 38/89 (42%)
Query: 180 NSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTL-SNASNTSPVLPGSSSVRGV 238
++ + + P S + +T +G TP + N+ QT + AS SP SS +
Sbjct: 316 STSIQQQLPQPNKSPILQPNNTARIGSPTPTT-NLSQQTQPTKASTPSPTF--SSVTKTS 372
Query: 239 FDNTGPISSSPPVNLTSSTKE-EDVGNFP 266
N S S P +T ++ +GN P
Sbjct: 373 IKNDNKQSHSQPTPVTIPNQQFPSLGNVP 401
Score = 61 (26.5 bits), Expect = 2.1e-59, Sum P(4) = 2.1e-59
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 436 NKQFSSQQN-PLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQ 494
N+QF S N P+ Q+ Q + A A L Q QQQ QQ QQ
Sbjct: 391 NQQFPSLGNVPMAQRLMQQQAQQQAAAAAQLAAQQAQTQQTQQQQQQQQQQQQQQQQQQQ 450
Score = 58 (25.5 bits), Expect = 5.5e-59, Sum P(4) = 5.5e-59
Identities = 31/110 (28%), Positives = 48/110 (43%)
Query: 169 EQGEDTASQDSNS---DVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNT 225
+ E ++ +DSNS D TP ++ TA+ A PI I+ Q N
Sbjct: 274 DDDESSSKKDSNSENEDEIKETPKVATA----TATATAEKSTQPI-ISTSIQQQLPQPNK 328
Query: 226 SPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLT 275
SP+L +++ R G S +P NL+ T+ P + S+PS T
Sbjct: 329 SPILQPNNTAR-----IG--SPTPTTNLSQQTQ-------PTKASTPSPT 364
Score = 49 (22.3 bits), Expect = 3.7e-58, Sum P(4) = 3.7e-58
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 481 QQQPNPIHQQSSQQTLMSGGQKDADVSH 508
QQQ HQQS QQ+ Q+ H
Sbjct: 577 QQQQQQSHQQSHQQSHQQSQQQSQQSQH 604
Score = 47 (21.6 bits), Expect = 1.9e-16, Sum P(4) = 1.9e-16
Identities = 18/98 (18%), Positives = 40/98 (40%)
Query: 633 PQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQN 692
PQP+ + + P P PQ Q P + + Y+QQ
Sbjct: 616 PQPQPQPQPQPQPQPQPQPQPQPQPQQQQPQHQSQQHQPQPQQPQQPQQPQHQP-YHQQQ 674
Query: 693 TYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDE 730
+YQQ + ++Q +Y ++ Q++++ +++ ++
Sbjct: 675 SYQQ-----QQQQQQQQYQQQQQQQQQQYQQQQMSQNQ 707
Score = 45 (20.9 bits), Expect = 9.7e-58, Sum P(4) = 9.7e-58
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 442 QQNPLLQQF-NSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQ 494
QQ P QQ N+Q + + Q+ + VQ +S++ +++QQ P Q QQ
Sbjct: 467 QQAPQQQQQQNTQFKNKTGQSDIN-DVQ----DSLSQLNIKQQQQPPQQPQQQQ 515
Score = 41 (19.5 bits), Expect = 2.5e-57, Sum P(4) = 2.5e-57
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 479 SLQQQPNPIHQQSSQQTLMS 498
S QQ HQQS QQ+ S
Sbjct: 583 SHQQSHQQSHQQSQQQSQQS 602
Score = 40 (19.1 bits), Expect = 3.2e-57, Sum P(4) = 3.2e-57
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 481 QQQPNPIHQQSSQQTLMSGGQKDADVSHLK 510
QQQ QQ QQ Q AD+ K
Sbjct: 512 QQQQQQQQQQQQQQQQQQQQQPQADLDDSK 541
Score = 39 (18.8 bits), Expect = 4.1e-57, Sum P(4) = 4.1e-57
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 481 QQQPNPIHQQSSQQ 494
Q Q P HQQ S Q
Sbjct: 664 QPQHQPYHQQQSYQ 677
Score = 39 (18.8 bits), Expect = 1.1e-56, Sum P(4) = 1.1e-56
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 469 APGMNSVTSASLQQQPNPIHQQSSQQTL 496
+P +SVT S++ H Q + T+
Sbjct: 362 SPTFSSVTKTSIKNDNKQSHSQPTPVTI 389
Score = 39 (18.8 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 648 HPAVTPPSYPQVQAPIVSNPAFWERL 673
H TP + P Q P + N +RL
Sbjct: 381 HSQPTPVTIPNQQFPSLGNVPMAQRL 406
>ZFIN|ZDB-GENE-040927-6 [details] [associations]
symbol:cnot3a "CCR4-NOT transcription complex,
subunit 3a" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-040927-6 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000014743 EMBL:CR854927 IPI:IPI00996653
Ensembl:ENSDART00000137699 ArrayExpress:E9QGK5 Bgee:E9QGK5
Uniprot:E9QGK5
Length = 901
Score = 402 (146.6 bits), Expect = 1.1e-57, Sum P(2) = 1.1e-57
Identities = 80/153 (52%), Positives = 98/153 (64%)
Query: 617 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 676
+Q+Y M E+A+ +P P DSER R Y+ R+P TPP + Q+ + F++RLS
Sbjct: 758 EQLYQQAMQEAAWTHMPHPSDSERIRQYLMRNPCPTPPFHHQMPPHHSDSIEFYQRLS-- 815
Query: 677 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 736
T+TLFF FYY + T QYL+AK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 816 ---TETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 872
Query: 737 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+YFD+ W QR K FTFEY YLED
Sbjct: 873 IYFDYE--------KWGQRKKEGFTFEYRYLED 897
Score = 269 (99.8 bits), Expect = 1.1e-57, Sum P(2) = 1.1e-57
Identities = 111/394 (28%), Positives = 166/394 (42%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSIT 57
DP +K K ET WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 115 DPAQKEKEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIE 174
Query: 58 RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPL 116
RH+ HI LE ILR+LDND + + ++ +KD +E Y++ +QD DFEE + LY L L
Sbjct: 175 RHRYHIRMLETILRMLDNDSIQVDAIHKIKDDVEYYIDSSQDPDFEEN---EFLYDDLDL 231
Query: 117 DKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQE--QGEDT 174
+ + + L+ P G ++ P S T + E +G T
Sbjct: 232 EDIPAT--LMATSPQGHIEDEMFLQSSSTPTSTTSSSPIPP-SPATGTTEILEDKRGRST 288
Query: 175 ASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSS 234
S+ S S V P + SS S +S + ++ +S+ + S S +L SS
Sbjct: 289 DSEVSQSPVKNGNP-SLSSFSSSASSGSSSSSSSLVSMATVVGGCTAVSGGSSLLASFSS 347
Query: 235 VRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXX-XXXX 293
V + V L+S++ + N P S P+L
Sbjct: 348 A--VQQHPPQSQQQTQVKLSSTSIPSN--NTPSPPSHPTLPASTASSLPSSSTPGPITSN 403
Query: 294 XXXXATAVPS--NGNLG------AVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRM 345
A++VP + LG V S V++ LG S + L+S S
Sbjct: 404 SLSQASSVPGVESSRLGLGKGGVTVTSSSSVSQMPGLGLTSLSSSLNTMAGLLSG-STPA 462
Query: 346 ILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPS 379
+QAA G TG S G + AG + PS
Sbjct: 463 PYAQAAAGGT-TGGASSGPVGSGSSSAG-ISIPS 494
Score = 63 (27.2 bits), Expect = 5.1e-36, Sum P(2) = 5.1e-36
Identities = 35/118 (29%), Positives = 44/118 (37%)
Query: 165 TSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASN 224
TS D S S + SS ST T GP+ SI +P T S A
Sbjct: 597 TSYSAVVADNTPDSSLSSASQSQNSHSSSSSSSTNQTLDNGPSLLSSITLPPSTPSPAFT 656
Query: 225 TSPVLPGSSSV-RGVFD---NTGPISS-SPPVNLTSSTKEEDVG-NFPGRRSSPSLTD 276
S PG S+ G NT I + PP +L + + +G G S LTD
Sbjct: 657 DST--PGGGSLLNGPHSYTPNTEAIKAPEPPSSLKAMAERAALGLALDGEIPSLHLTD 712
Score = 62 (26.9 bits), Expect = 6.5e-36, Sum P(2) = 6.5e-36
Identities = 38/177 (21%), Positives = 65/177 (36%)
Query: 325 EERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVA-MAGRVFTPSMGMQ 383
E++ G S + SP+ N + + +GS S+++ ++A + G S G
Sbjct: 281 EDKRGRSTDSEVSQSPVKNGNPSLSSFSSSASSGSSSSSSSLVSMATVVGGCTAVSGGSS 340
Query: 384 WRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQ 443
S Q P Q + +T++ H L + SS
Sbjct: 341 LLASFSSAVQQHPPQSQQQTQVKLSSTS--IPSNNTPSPPSHPTLPAST-ASSLPSSSTP 397
Query: 444 NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPN-PIHQQSSQQTLMSG 499
P+ SQ SS+ LG+ G+ +S+S+ Q P + SS M+G
Sbjct: 398 GPITSNSLSQASSVPGVESSRLGLGKGGVTVTSSSSVSQMPGLGLTSLSSSLNTMAG 454
Score = 57 (25.1 bits), Expect = 2.2e-35, Sum P(2) = 2.2e-35
Identities = 24/77 (31%), Positives = 34/77 (44%)
Query: 181 SDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFD 240
++VA PP+ G+T+ + V TP S A N+ ++S SSS D
Sbjct: 580 TNVAPARPPSGLKQNGATSYSAVVADNTPDSSLSSASQSQNSHSSS----SSSSTNQTLD 635
Query: 241 NTGPISSSPPVNLTSST 257
N GP S + L ST
Sbjct: 636 N-GP-SLLSSITLPPST 650
Score = 50 (22.7 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 452 SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADV 506
+ SS+S GLGL + +N++ P P Q ++ T +GG V
Sbjct: 429 TSSSSVSQMPGLGLTSLSSSLNTMAGLLSGSTPAPYAQAAAGGT--TGGASSGPV 481
Score = 48 (22.0 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 21/86 (24%), Positives = 33/86 (38%)
Query: 164 VTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNAS 223
+TS+ A S S A A G +S P ++ I++P+ + A
Sbjct: 442 LTSLSSSLNTMAGLLSGSTPAPYAQAAAGGTTGGASSGPVGSGSSSAGISIPSGVVGGA- 500
Query: 224 NTSPVLPGSSSVRGVFDNTGPISSSP 249
NT G+ G + G + SSP
Sbjct: 501 NTGATSNGT----GTGASIGLLGSSP 522
>ASPGD|ASPL0000074489 [details] [associations]
symbol:AN4585 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0006355 EMBL:BN001303 HOGENOM:HOG000184850
OMA:ESIYHLP EnsemblFungi:CADANIAT00005852 Uniprot:C8V7V5
Length = 616
Score = 389 (142.0 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 75/149 (50%), Positives = 98/149 (65%)
Query: 623 QMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 682
++L ++ P+P DSE+ R Y P++P TP YPQ I+ +P +E +D TDT
Sbjct: 478 RLLTASAANCPEPGDSEKPRHYKPQNPYNTPLYYPQEPLAILDDPRLYETGRID---TDT 534
Query: 683 LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFH 742
LF+ FYY+Q +YQQYLAAK LK QSWR+H++Y TWFQRHEEPK +EFEQGTY +FD+
Sbjct: 535 LFYLFYYRQGSYQQYLAAKALKGQSWRFHKQYQTWFQRHEEPKTITEEFEQGTYRFFDY- 593
Query: 743 IANDDLQHGWCQRIKTEFTFEYNYLEDEL 771
+ W R K +F F Y YLEDEL
Sbjct: 594 ------ESTWMNRRKADFKFIYKYLEDEL 616
Score = 219 (82.2 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 96/315 (30%), Positives = 137/315 (43%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL--TVKKGK---TRPPRLTHLETSIT 57
DPK+K K ET D+L+N+V EL+ +I++ EAE E L ++KKGK T+ RL L I
Sbjct: 114 DPKDKEKVETCDFLSNMVDELQQKIEAMEAEEESLQMSMKKGKKDVTKTNRLADLAHFIE 173
Query: 58 RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER-NQDDFEEFSDVDELYHLLPL 116
RHK H+ KLEL+LR L N + QV D+K+ ++ YVE NQ D+ + + LY L
Sbjct: 174 RHKWHVNKLELLLRSLQNGNIETSQVVDLKESIKYYVEDGNQIDYA--GEDETLYD--DL 229
Query: 117 DKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTAS 176
+ + E IG P S TS + +A
Sbjct: 230 NMGDDAEAQFGIGGDNDRVSSQDTQSMQDEEVEAKPKPKAEASA----TSHRRP---SAQ 282
Query: 177 QDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVR 236
S V A P+ SS S+AS + PA P + +P +TL AS + +
Sbjct: 283 MKSPLPVLATLHPSSSS---SSAS--GMKPAPPPT-RLPGETLKYASAAAAAAASDKNGV 336
Query: 237 GVFDNTGPISSSP------PVNLTSSTKEEDVGNF-PGRRSSPSLTDVRVMGRGGXXXXX 289
G+ P +SP P + SST V P +++P+ V GR
Sbjct: 337 GIAPLPPPPGASPAFPSAVPASKASSTASPVVTLAQPVPKATPAAAIVAEEGRSRTPAFS 396
Query: 290 XXXXXXXXAT-AVPS 303
A+ VPS
Sbjct: 397 PKVSAAVSASNTVPS 411
Score = 54 (24.1 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 19/79 (24%), Positives = 31/79 (39%)
Query: 188 PPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS 247
P A + S+ ++P V A P+ PA + S S V + + S
Sbjct: 352 PSAVPASKASSTASPVVTLAQPVPKATPAAAIVAEEGRSRTPAFSPKVSAAVSASNTVPS 411
Query: 248 SPPVNL--TSSTKEEDVGN 264
+P ++ T+STK N
Sbjct: 412 TPAMDKAETASTKPPAAAN 430
Score = 40 (19.1 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 16/63 (25%), Positives = 20/63 (31%)
Query: 171 GEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLP 230
GE + + PP + S T A P S Q L AS + P
Sbjct: 431 GESNKENQAGEESIYHLPPGLQDLIHSFEVTKNRASANPSSQPPSVQRLLTASAANCPEP 490
Query: 231 GSS 233
G S
Sbjct: 491 GDS 493
>POMBASE|SPAC1B3.05 [details] [associations]
symbol:not3 "CCR4-Not complex subunit Not3/5 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=IC] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
PomBase:SPAC1B3.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0006351 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850 PIR:T38023
RefSeq:NP_594789.2 STRING:O13870 EnsemblFungi:SPAC1B3.05.1
GeneID:2542126 OrthoDB:EOG4NW2V3 NextBio:20803198 Uniprot:O13870
Length = 640
Score = 355 (130.0 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
Identities = 70/144 (48%), Positives = 88/144 (61%)
Query: 627 SAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFA 686
S Y +P D+ + + YIP+ P P YPQ P+ + E + DTLF+
Sbjct: 505 SCVY-VPDATDAAKPQYYIPKDPYPVPHYYPQQPLPLFDSSEMTELVD-----PDTLFYM 558
Query: 687 FYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIAND 746
FYY+ TYQQY+A +ELKKQSWR+H+KY TWFQRHEEPK+ DEFE G+Y YFDF D
Sbjct: 559 FYYRPGTYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMITDEFESGSYRYFDFE--GD 616
Query: 747 DLQHGWCQRIKTEFTFEYNYLEDE 770
W QR K +F F Y YLED+
Sbjct: 617 -----WVQRKKADFRFTYQYLEDD 635
Score = 254 (94.5 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
Identities = 82/260 (31%), Positives = 125/260 (48%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL--TVKKGKTRPPRLTHL---ETSIT 57
DPKEK K +T W++N V ELE Q + EAE E L T K+GK +L+HL E+ I
Sbjct: 114 DPKEKEKQDTIQWISNAVEELERQAELIEAEAESLKATFKRGKKDLSKLSHLSELESRIE 173
Query: 58 RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLD 117
RHK H KLELI+R L+N ++SPE VND+++ + YVE +Q E+F++ + LY L LD
Sbjct: 174 RHKWHQDKLELIMRRLENSQISPEAVNDIQEDIMYYVECSQS--EDFAEDENLYDELNLD 231
Query: 118 KVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQ 177
+ + D G + ++V S +D A +
Sbjct: 232 EASASYDAERSGRSS--SSSHSPSPSASSSSSSENLLQDKAEAEEKV-SADASVQDIAEK 288
Query: 178 DS-NSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVR 236
+S ++D T + + A T G IS N Q S T+P +S+V
Sbjct: 289 ESLDADKELATNDQEDDEEENQAETQKDGA---ISNNENMQ--SEVQTTNPSA-STSAVT 342
Query: 237 GVFDNTGPISSSPPVNLTSS 256
+ T + S P+++++S
Sbjct: 343 NITKPTLIQNPSTPLSVSNS 362
Score = 49 (22.3 bits), Expect = 5.1e-30, Sum P(2) = 5.1e-30
Identities = 28/119 (23%), Positives = 53/119 (44%)
Query: 168 QEQGEDTASQDSNSDVAARTPPAKSSGVGS-TASTPAVGPATPISIN---VPAQTLSNAS 223
Q+ G + +++ S+V P A +S V + T T P+TP+S++ V + NA+
Sbjct: 314 QKDGAISNNENMQSEVQTTNPSASTSAVTNITKPTLIQNPSTPLSVSNSKVASPETPNAT 373
Query: 224 NTSP----------------VLPGSSSVRGVFDNTGPIS-SSPPVNLTS-STKEEDVGN 264
+T+P + S S + P + +SP +N T +K + +G+
Sbjct: 374 HTAPKVEMRYASAAAAAAAALAKESPSHHYIMQQVRPETPNSPRLNSTVIQSKWDSLGH 432
>WB|WBGene00003826 [details] [associations]
symbol:ntl-3 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 328 (120.5 bits), Expect = 1.6e-42, Sum P(3) = 1.6e-42
Identities = 74/147 (50%), Positives = 88/147 (59%)
Query: 625 LESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPA-FWERLSLDSYGTDTL 683
LE A K P DSE+ R+Y+ + P Y Q AP S+ ++ RL+ DTL
Sbjct: 566 LELACAKATFPLDSEKPRNYLSKVSFPVPSWYGQT-APNTSDSLEYYLRLA-----PDTL 619
Query: 684 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHI 743
FF FYY + T Q LAAK LKK SWR+H KY TWFQRHEEPK D++EQGTYVYFDF
Sbjct: 620 FFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQITDDYEQGTYVYFDFE- 678
Query: 744 ANDDLQHGWCQRIKTEFTFEYNYLEDE 770
W QR K FTFEY +LED+
Sbjct: 679 -------KWSQRKKESFTFEYKFLEDK 698
Score = 163 (62.4 bits), Expect = 1.6e-42, Sum P(3) = 1.6e-42
Identities = 42/122 (34%), Positives = 68/122 (55%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV------KKGKT--------RPPR 48
DPKEK K+ET DW+ + + L ++D E +LE L+ K+GK R R
Sbjct: 115 DPKEKEKAETMDWIQHQIRSLNEEVDRTEMQLESLSNTDTGKGKRGKKEDAKTKNEREKR 174
Query: 49 LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVND-VKDLLEDYVER-NQDDFEEFSD 106
+ L+ + R HI KLE+ +R++ N+ L+ + V + +K+ +E YVE N++D EE +
Sbjct: 175 VEGLKHHLERINFHIEKLEICMRMISNESLNAKMVLETLKEPIETYVEMMNEEDSEEADN 234
Query: 107 VD 108
D
Sbjct: 235 YD 236
Score = 79 (32.9 bits), Expect = 1.6e-42, Sum P(3) = 1.6e-42
Identities = 37/124 (29%), Positives = 57/124 (45%)
Query: 153 MPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPA--------------KSSGVGST 198
+P ++ S H +V + + AS+DSN D RTPP S G +
Sbjct: 304 VPLSMPSPH----AVTPELKRLASKDSNVD-RPRTPPVTPASAAPPPPGIPYNSVAAGRS 358
Query: 199 ASTPAVGPATPISINVPAQTLSNASN---TSPVLPGSSSVRGVFDNTGPISSSPPV--NL 253
+TP P+TPIS N PA +L+ A+ SPV P +++ +S P ++
Sbjct: 359 TTTPV--PSTPISANSPAPSLAQAAPIAAASPVFPPAAAAASKPVLAQSVSEMPQKKESI 416
Query: 254 TSST 257
TS+T
Sbjct: 417 TSTT 420
Score = 48 (22.0 bits), Expect = 1.5e-30, Sum P(3) = 1.5e-30
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 60 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKV 119
K I KL+ + + N + + E + D KD L Y + + E+F DV+ P K+
Sbjct: 49 KKEIKKLQRLRDQVKNWQNASE-IKD-KDKLNSYRKLIEQRMEQFKDVERENKTKPHSKL 106
Score = 42 (19.8 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
Identities = 20/88 (22%), Positives = 35/88 (39%)
Query: 175 ASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSS 234
AS+ + + P K S +T+ A PAT + T S+ P++ +
Sbjct: 397 ASKPVLAQSVSEMPQKKESITSTTSRGSAAAPAT--TTTTTTTTTSSEPAEVPLVV-QQT 453
Query: 235 VRGVFDNTGPISSSPPVNLTSSTKEEDV 262
V F N G S + LT +++ +
Sbjct: 454 VSETFVN-GVDSPAAATRLTQQERQQQL 480
Score = 37 (18.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 636 KDSERARSYIPRHPAVTPPS 655
KDS R PR P VTP S
Sbjct: 324 KDSNVDR---PRTPPVTPAS 340
>UNIPROTKB|G5EFX8 [details] [associations]
symbol:ntl-3 "Protein NTL-3, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 328 (120.5 bits), Expect = 1.6e-42, Sum P(3) = 1.6e-42
Identities = 74/147 (50%), Positives = 88/147 (59%)
Query: 625 LESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPA-FWERLSLDSYGTDTL 683
LE A K P DSE+ R+Y+ + P Y Q AP S+ ++ RL+ DTL
Sbjct: 566 LELACAKATFPLDSEKPRNYLSKVSFPVPSWYGQT-APNTSDSLEYYLRLA-----PDTL 619
Query: 684 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHI 743
FF FYY + T Q LAAK LKK SWR+H KY TWFQRHEEPK D++EQGTYVYFDF
Sbjct: 620 FFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQITDDYEQGTYVYFDFE- 678
Query: 744 ANDDLQHGWCQRIKTEFTFEYNYLEDE 770
W QR K FTFEY +LED+
Sbjct: 679 -------KWSQRKKESFTFEYKFLEDK 698
Score = 163 (62.4 bits), Expect = 1.6e-42, Sum P(3) = 1.6e-42
Identities = 42/122 (34%), Positives = 68/122 (55%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV------KKGKT--------RPPR 48
DPKEK K+ET DW+ + + L ++D E +LE L+ K+GK R R
Sbjct: 115 DPKEKEKAETMDWIQHQIRSLNEEVDRTEMQLESLSNTDTGKGKRGKKEDAKTKNEREKR 174
Query: 49 LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVND-VKDLLEDYVER-NQDDFEEFSD 106
+ L+ + R HI KLE+ +R++ N+ L+ + V + +K+ +E YVE N++D EE +
Sbjct: 175 VEGLKHHLERINFHIEKLEICMRMISNESLNAKMVLETLKEPIETYVEMMNEEDSEEADN 234
Query: 107 VD 108
D
Sbjct: 235 YD 236
Score = 79 (32.9 bits), Expect = 1.6e-42, Sum P(3) = 1.6e-42
Identities = 37/124 (29%), Positives = 57/124 (45%)
Query: 153 MPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPA--------------KSSGVGST 198
+P ++ S H +V + + AS+DSN D RTPP S G +
Sbjct: 304 VPLSMPSPH----AVTPELKRLASKDSNVD-RPRTPPVTPASAAPPPPGIPYNSVAAGRS 358
Query: 199 ASTPAVGPATPISINVPAQTLSNASN---TSPVLPGSSSVRGVFDNTGPISSSPPV--NL 253
+TP P+TPIS N PA +L+ A+ SPV P +++ +S P ++
Sbjct: 359 TTTPV--PSTPISANSPAPSLAQAAPIAAASPVFPPAAAAASKPVLAQSVSEMPQKKESI 416
Query: 254 TSST 257
TS+T
Sbjct: 417 TSTT 420
Score = 48 (22.0 bits), Expect = 1.5e-30, Sum P(3) = 1.5e-30
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 60 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKV 119
K I KL+ + + N + + E + D KD L Y + + E+F DV+ P K+
Sbjct: 49 KKEIKKLQRLRDQVKNWQNASE-IKD-KDKLNSYRKLIEQRMEQFKDVERENKTKPHSKL 106
Score = 42 (19.8 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
Identities = 20/88 (22%), Positives = 35/88 (39%)
Query: 175 ASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSS 234
AS+ + + P K S +T+ A PAT + T S+ P++ +
Sbjct: 397 ASKPVLAQSVSEMPQKKESITSTTSRGSAAAPAT--TTTTTTTTTSSEPAEVPLVV-QQT 453
Query: 235 VRGVFDNTGPISSSPPVNLTSSTKEEDV 262
V F N G S + LT +++ +
Sbjct: 454 VSETFVN-GVDSPAAATRLTQQERQQQL 480
Score = 37 (18.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 636 KDSERARSYIPRHPAVTPPS 655
KDS R PR P VTP S
Sbjct: 324 KDSNVDR---PRTPPVTPAS 340
>ZFIN|ZDB-GENE-030131-5838 [details] [associations]
symbol:cnot3b "CCR4-NOT transcription complex,
subunit 3b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-030131-5838 GO:GO:0005634 GO:GO:0006355
HOVERGEN:HBG051042 KO:K12580 EMBL:BC045499 IPI:IPI00859465
RefSeq:NP_956134.1 UniGene:Dr.6354 ProteinModelPortal:Q7ZVL4
STRING:Q7ZVL4 PRIDE:Q7ZVL4 GeneID:327627 KEGG:dre:327627 CTD:327627
InParanoid:Q7ZVL4 NextBio:20810115 ArrayExpress:Q7ZVL4 Bgee:Q7ZVL4
Uniprot:Q7ZVL4
Length = 908
Score = 259 (96.2 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 84/281 (29%), Positives = 134/281 (47%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSIT 57
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 115 DPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIE 174
Query: 58 RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPL 116
RH+ HI LE ILR+LDND + + + +KD +E Y++ +QD DFEE + LY L L
Sbjct: 175 RHRFHIRMLETILRMLDNDSIQVDSIRKIKDDVEYYLDSSQDPDFEEN---EFLYDDLDL 231
Query: 117 DKVESLEDLVTIGPPG-----LVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQG 171
+++ +V P G + + PAT +T+ + +++G
Sbjct: 232 EEIPL--PVVPTSPAGHPDDEIFQHSSSTPTSTTSSSPIPPSPATC-TTNSE--DEKKRG 286
Query: 172 EDTASQDSNSDVA-ARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLP 230
T S+ S S + + SS ++S+ + IS+ A + S+AS +S +L
Sbjct: 287 HSTDSEISQSPIKNGNQSSSLSSSSSLSSSSSGASSISLISMATLASSGSSASGSSSLL- 345
Query: 231 GSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSS 271
G+ SV N+G SS+ S ++ N S+
Sbjct: 346 GNISVP--LQNSGSYSSATQQQTQQSQQQHQPKNSASSHSN 384
Score = 235 (87.8 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 48/95 (50%), Positives = 61/95 (64%)
Query: 617 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 676
DQ+Y M ESA+ +P P DSER R Y+ R+P T P + Q+ P + F++RLS
Sbjct: 742 DQLYQQAMQESAWAHMPHPSDSERIRQYLMRNPCPTLPFHHQMPPPHSDSVEFYQRLS-- 799
Query: 677 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH 711
T+TLFF FYY + T QYLAAK LKKQSWR+H
Sbjct: 800 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFH 831
Score = 88 (36.0 bits), Expect = 8.4e-20, Sum P(3) = 8.4e-20
Identities = 55/238 (23%), Positives = 96/238 (40%)
Query: 159 STHQQVTSVQEQGE--DTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPA 216
+T QQ Q+Q + ++AS SNS A+ + +S S +T +GP TP S +
Sbjct: 361 ATQQQTQQSQQQHQPKNSASSHSNSTSASNSILLPTSASTSPPNTSTLGPLTPSSQSQTN 420
Query: 217 QTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD 276
+S +S+ + G+S++ G + S P +L+ G+ P + +
Sbjct: 421 LGMSLSSSLG-LGKGTSALTGTNQMPSLVLSGMPASLSGFLS----GSTPAPYAQAAAAG 475
Query: 277 VRVMGRGGXXXXXXXXXXXXXA-TAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQ 335
G T++ +NG+LG+ L+ + ILG LGS+
Sbjct: 476 CVGSGLSSAIGTNISSTNSSGVVTSLGTNGSLGSTSLLGSGS--GILG----LGSTFAAV 529
Query: 336 SLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMA---GRVFTPSMGMQWRTGNSF 390
+ L+ + S G++ G I S+ A A G P G + G+S+
Sbjct: 530 EPLPLLAPSPVGSTLTSGSN-VGVIGSSGGTSGTANATGSGTQPRPPSGPKQNGGSSY 586
Score = 67 (28.6 bits), Expect = 9.3e-18, Sum P(2) = 9.3e-18
Identities = 36/153 (23%), Positives = 55/153 (35%)
Query: 339 SPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNE-PG 397
S LS+ LS ++ G I T+A +G + S + QN
Sbjct: 305 SSLSSSSSLSSSSSGASSISLISM----ATLASSGSSASGSSSLLGNISVPLQNSGSYSS 360
Query: 398 QFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQ--FSSQQNPLLQQFNSQ-- 453
+ +T+ + Q + SN + +P + +S PL SQ
Sbjct: 361 ATQQQTQQSQQQHQPKNSASSHSNSTSASNSILLPTSASTSPPNTSTLGPLTPSSQSQTN 420
Query: 454 -GSSISAQAGLGLGVQA-PGMNSVTSASLQQQP 484
G S+S+ GLG G A G N + S L P
Sbjct: 421 LGMSLSSSLGLGKGTSALTGTNQMPSLVLSGMP 453
Score = 53 (23.7 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 452 SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQ 494
S GSS S + L + P NS + +S QQ QQS QQ
Sbjct: 333 SSGSSASGSSSLLGNISVPLQNSGSYSSATQQQT---QQSQQQ 372
Score = 49 (22.3 bits), Expect = 6.9e-16, Sum P(2) = 6.9e-16
Identities = 32/132 (24%), Positives = 56/132 (42%)
Query: 154 PATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGV---GSTASTPAVGPATPI 210
P+ V ST ++V G + + + + T P SG G ++ + VG +T
Sbjct: 537 PSPVGSTLTSGSNVGVIGSSGGTSGTANATGSGTQPRPPSGPKQNGGSSYSAVVGDSTSD 596
Query: 211 S-INVPAQTLSNASN------TSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVG 263
S +N +Q+ ++ S+ T+ ++ SS+ G P SS PV S +
Sbjct: 597 SALNSASQSQNSQSSSLNLAVTNQLMDSGSSLLGSM-TLAP-SSPSPVYSESKAGGGSLL 654
Query: 264 NFPGRRSSPSLT 275
N P + P+ T
Sbjct: 655 NGPHSYTQPADT 666
Score = 43 (20.2 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 435 GNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQ-QQPNPIHQQS 491
G+ S N Q NSQ SS++ L G + + S +L P+P++ +S
Sbjct: 591 GDSTSDSALNSASQSQNSQSSSLNLAVTNQL--MDSGSSLLGSMTLAPSSPSPVYSES 646
>UNIPROTKB|H0Y5X7 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H0Y5X7 Ensembl:ENST00000457463 Uniprot:H0Y5X7
Length = 288
Score = 340 (124.7 bits), Expect = 7.0e-32, Sum P(2) = 7.0e-32
Identities = 64/117 (54%), Positives = 79/117 (67%)
Query: 617 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 676
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 142 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 199
Query: 677 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQ 733
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQ
Sbjct: 200 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQ 253
Score = 41 (19.5 bits), Expect = 7.0e-32, Sum P(2) = 7.0e-32
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 458 SAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSS 492
SA A G G APG + + P P++ SS
Sbjct: 5 SAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPPSS 39
Score = 37 (18.1 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 430 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 470
G L G QFS+ + S S++ +A + G++ P
Sbjct: 51 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 91
>UNIPROTKB|F1RNH3 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580 OMA:IFYYLEP
GeneTree:ENSGT00390000014743 EMBL:FP476135 RefSeq:XP_003356092.1
Ensembl:ENSSSCT00000003625 GeneID:100520963 KEGG:ssc:100520963
Uniprot:F1RNH3
Length = 719
Score = 257 (95.5 bits), Expect = 1.5e-31, Sum P(3) = 1.5e-31
Identities = 86/286 (30%), Positives = 127/286 (44%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSIT 57
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 115 DPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIE 174
Query: 58 RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPL 116
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L
Sbjct: 175 KHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDL 231
Query: 117 DKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTAS 176
+ + + LV PP + + + T+ E ED
Sbjct: 232 EDIP--QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDKK 287
Query: 177 QDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPGS 232
+ ++D PAK S V S +PAV P+ P P T S A +T+P G+
Sbjct: 288 RGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPSYPSG---PPPTAS-ALSTTPGNNGA 343
Query: 233 SSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR 278
+ GP +S P + + + P S PS R
Sbjct: 344 PAPAAPASALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTAQPR 389
Score = 169 (64.5 bits), Expect = 1.5e-31, Sum P(3) = 1.5e-31
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 617 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 676
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 611 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 668
Query: 677 SYGTDTLFFAFYY 689
T+TLFF FYY
Sbjct: 669 ---TETLFFIFYY 678
Score = 76 (31.8 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 30/88 (34%), Positives = 40/88 (45%)
Query: 179 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPG 231
S S V A +P A SS G+T S+ A+GP + N P T S +P V PG
Sbjct: 429 SYSSVVADSPAEVALSSSGGNTTSSQALGPPSGPH-NPPPSTSKEPSAAAPTGAGGVAPG 487
Query: 232 SSSVRGVFDNTGPISSSPPVNLTSSTKE 259
S + G P+ +PP + T S E
Sbjct: 488 SGNNSGGPSLLVPLPVNPPSSPTPSFSE 515
Score = 47 (21.6 bits), Expect = 1.5e-31, Sum P(3) = 1.5e-31
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 434 GGNKQFSSQQNPLLQQFN---SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQ 490
GGN S P N S SA A G G APG + + P P++
Sbjct: 447 GGNTTSSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPP 506
Query: 491 SS 492
SS
Sbjct: 507 SS 508
Score = 45 (20.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 15/59 (25%), Positives = 21/59 (35%)
Query: 155 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 213
+ V + +V G T+SQ PP +S S A+ G P S N
Sbjct: 432 SVVADSPAEVALSSSGGNTTSSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGN 490
>CGD|CAL0002492 [details] [associations]
symbol:NOT5 species:5476 "Candida albicans" [GO:0030445
"yeast-form cell wall" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0016337 "cell-cell adhesion" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030015 "CCR4-NOT core
complex" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 CGD:CAL0002492
GO:GO:0005634 GO:GO:0030445 GO:GO:0071216 GO:GO:0036180
GO:GO:0009405 GO:GO:0006355 GO:GO:0016337 EMBL:AACQ01000053
EMBL:AACQ01000052 KO:K12580 RefSeq:XP_717570.1 RefSeq:XP_717644.1
STRING:Q5A755 GeneID:3640763 GeneID:3640828 KEGG:cal:CaO19.12573
KEGG:cal:CaO19.5107 Uniprot:Q5A755
Length = 662
Score = 198 (74.8 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 75/289 (25%), Positives = 129/289 (44%)
Query: 6 EKAK-SETRDWLNNLVSELESQIDSFEAELEGLTV----KKGKTRPPRLTHLETSITRHK 60
+ AK E ++N ++ +L Q + E EL+ L+ K G + + ++ I R+
Sbjct: 121 DDAKYQEACTYINEVIEQLNGQNEELEQELDSLSGQSKRKGGSSIQSSIDDVKYKIERNN 180
Query: 61 AHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVE 120
+HI KLE +L LDND+L P +++D+KD L+ YVE NQD E++ + DE Y L +D+
Sbjct: 181 SHISKLEEVLENLDNDKLDPARIDDIKDDLDYYVENNQD--EDYVEYDEFYDQLEVDE-- 236
Query: 121 SLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSN 180
ED V + G + + QQ ++S +
Sbjct: 237 --EDDVEV--QGSLAQMAAETEDERRRDEERKREEKEKEKQQQNPPRTSSSVSSSSSSNQ 292
Query: 181 SDVAARTPPA---KSS-----GVG---STASTPAVGPATPISINVPAQTLSNASNTSPVL 229
+++ TPPA K S +G + +++ A +TP+ P TL+ A P+
Sbjct: 293 NNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKLKP--TLAPAPAPPPIT 350
Query: 230 PGSSSVRGV-FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSP-SLTD 276
G+S + T SS+ ++ + + + N R SP + TD
Sbjct: 351 SGTSYSNAIKAAQTASTSSTSNSSIAHTANDNNNTNKGNRSVSPLASTD 399
Score = 134 (52.2 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 624 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS-NPAFWERLSLDSYGTDT 682
+LE++ P D+E+ R Y P + V P S Q P+ N + + + + DT
Sbjct: 493 LLETSLLNCPDSYDAEKPRQYNPVN--VHPSSIDYPQEPMYELNSSHY----MKKFDNDT 546
Query: 683 LFFAFYYQQ--NTYQQYLAAKELKKQSWRYHRKYNTWFQR 720
LFF FYY ++ +Y AAKEL ++ W ++ +++ WF +
Sbjct: 547 LFFCFYYGDGIDSISKYNAAKELSRRGWVFNTEFSQWFSK 586
Score = 62 (26.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 31/139 (22%), Positives = 54/139 (38%)
Query: 244 PISSSPPVNLTSSTKEEDVGNF--PGRRSSPSLTDVRVMG-RGGXXXXXXXXXXXXXATA 300
P +S V+ +SS+ + ++GN P + PS+ V +G +
Sbjct: 277 PPRTSSSVSSSSSSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKL 336
Query: 301 VPSNGNLGAVP-LVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGS 359
P+ A P + S + N + A + +S S ++ +N + KGN
Sbjct: 337 KPTLAPAPAPPPITSGTSYSNAIKAAQTASTSSTSNSSIAHTANDN--NNTNKGNRSVSP 394
Query: 360 IDSNNAGETVAMAGRVFTP 378
+ S + T A A V TP
Sbjct: 395 LASTD-NHTHAPAA-VSTP 411
Score = 46 (21.3 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 355 DGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNS 389
DG SI NA + ++ G VF QW + +S
Sbjct: 555 DGIDSISKYNAAKELSRRGWVFNTEFS-QWFSKDS 588
>UNIPROTKB|Q5A755 [details] [associations]
symbol:NOT5 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Not5p" species:237561 "Candida albicans SC5314"
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0016337 "cell-cell
adhesion" evidence=IMP] [GO:0030445 "yeast-form cell wall"
evidence=IDA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0071216 "cellular response to biotic stimulus"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
CGD:CAL0002492 GO:GO:0005634 GO:GO:0030445 GO:GO:0071216
GO:GO:0036180 GO:GO:0009405 GO:GO:0006355 GO:GO:0016337
EMBL:AACQ01000053 EMBL:AACQ01000052 KO:K12580 RefSeq:XP_717570.1
RefSeq:XP_717644.1 STRING:Q5A755 GeneID:3640763 GeneID:3640828
KEGG:cal:CaO19.12573 KEGG:cal:CaO19.5107 Uniprot:Q5A755
Length = 662
Score = 198 (74.8 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 75/289 (25%), Positives = 129/289 (44%)
Query: 6 EKAK-SETRDWLNNLVSELESQIDSFEAELEGLTV----KKGKTRPPRLTHLETSITRHK 60
+ AK E ++N ++ +L Q + E EL+ L+ K G + + ++ I R+
Sbjct: 121 DDAKYQEACTYINEVIEQLNGQNEELEQELDSLSGQSKRKGGSSIQSSIDDVKYKIERNN 180
Query: 61 AHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVE 120
+HI KLE +L LDND+L P +++D+KD L+ YVE NQD E++ + DE Y L +D+
Sbjct: 181 SHISKLEEVLENLDNDKLDPARIDDIKDDLDYYVENNQD--EDYVEYDEFYDQLEVDE-- 236
Query: 121 SLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSN 180
ED V + G + + QQ ++S +
Sbjct: 237 --EDDVEV--QGSLAQMAAETEDERRRDEERKREEKEKEKQQQNPPRTSSSVSSSSSSNQ 292
Query: 181 SDVAARTPPA---KSS-----GVG---STASTPAVGPATPISINVPAQTLSNASNTSPVL 229
+++ TPPA K S +G + +++ A +TP+ P TL+ A P+
Sbjct: 293 NNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKLKP--TLAPAPAPPPIT 350
Query: 230 PGSSSVRGV-FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSP-SLTD 276
G+S + T SS+ ++ + + + N R SP + TD
Sbjct: 351 SGTSYSNAIKAAQTASTSSTSNSSIAHTANDNNNTNKGNRSVSPLASTD 399
Score = 134 (52.2 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 624 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS-NPAFWERLSLDSYGTDT 682
+LE++ P D+E+ R Y P + V P S Q P+ N + + + + DT
Sbjct: 493 LLETSLLNCPDSYDAEKPRQYNPVN--VHPSSIDYPQEPMYELNSSHY----MKKFDNDT 546
Query: 683 LFFAFYYQQ--NTYQQYLAAKELKKQSWRYHRKYNTWFQR 720
LFF FYY ++ +Y AAKEL ++ W ++ +++ WF +
Sbjct: 547 LFFCFYYGDGIDSISKYNAAKELSRRGWVFNTEFSQWFSK 586
Score = 62 (26.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 31/139 (22%), Positives = 54/139 (38%)
Query: 244 PISSSPPVNLTSSTKEEDVGNF--PGRRSSPSLTDVRVMG-RGGXXXXXXXXXXXXXATA 300
P +S V+ +SS+ + ++GN P + PS+ V +G +
Sbjct: 277 PPRTSSSVSSSSSSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKL 336
Query: 301 VPSNGNLGAVP-LVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGS 359
P+ A P + S + N + A + +S S ++ +N + KGN
Sbjct: 337 KPTLAPAPAPPPITSGTSYSNAIKAAQTASTSSTSNSSIAHTANDN--NNTNKGNRSVSP 394
Query: 360 IDSNNAGETVAMAGRVFTP 378
+ S + T A A V TP
Sbjct: 395 LASTD-NHTHAPAA-VSTP 411
Score = 46 (21.3 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 355 DGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNS 389
DG SI NA + ++ G VF QW + +S
Sbjct: 555 DGIDSISKYNAAKELSRRGWVFNTEFS-QWFSKDS 588
>UNIPROTKB|H7C148 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 Pfam:PF04065 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C148 Ensembl:ENST00000440571 Uniprot:H7C148
Length = 375
Score = 253 (94.1 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 99/346 (28%), Positives = 144/346 (41%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKGKT--RPPRLTHLETSI 56
DP +K K E WL N + L Q+D FE+E+E L+V KKG + R+ L+ I
Sbjct: 36 DPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHI 95
Query: 57 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 115
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L
Sbjct: 96 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLD 152
Query: 116 LDKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTA 175
L+ + + LV PP + + + T+ E ED
Sbjct: 153 LEDIP--QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDK 208
Query: 176 SQDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPG 231
+ ++D PAK S V S +PAV P P S PA ++A +T+P G
Sbjct: 209 KRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYP-SGPPPA---ASALSTTPGNNG 264
Query: 232 SSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD-----VRVMGRGGXX 286
+ GP +S P + + + P S PS T V+ G GG
Sbjct: 265 VPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGG 324
Query: 287 XXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSG 332
++A G S V + AE L SSG
Sbjct: 325 SGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADS--PAEVALSSSG 368
>SGD|S000001300 [details] [associations]
symbol:NOT3 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IDA;IPI] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IMP] [GO:0016567 "protein ubiquitination"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
SGD:S000001300 GO:GO:0005634 GO:GO:0005737 EMBL:BK006942
GO:GO:0006351 GO:GO:0016567 EMBL:Z46861 GO:GO:0032968 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 KO:K12580 GeneTree:ENSGT00390000014743
KO:K10661 RefSeq:NP_012234.3 GeneID:854781 KEGG:sce:YIL030C
OrthoDB:EOG4NW2V3 EMBL:X04289 EMBL:AY692897 PIR:S49940
RefSeq:NP_012226.3 ProteinModelPortal:P06102 DIP:DIP-2256N
IntAct:P06102 MINT:MINT-426406 STRING:P06102 PaxDb:P06102
PeptideAtlas:P06102 EnsemblFungi:YIL038C GeneID:854773
KEGG:sce:YIL038C CYGD:YIL038c HOGENOM:HOG000113831 OMA:MEKYKAV
NextBio:977541 Genevestigator:P06102 GermOnline:YIL038C
Uniprot:P06102
Length = 836
Score = 169 (64.5 bits), Expect = 3.2e-16, Sum P(3) = 3.2e-16
Identities = 42/126 (33%), Positives = 71/126 (56%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV--KKGKTRPPRLTHLETSITRHK 60
DP+E+ + + ++L+ ++ ELE Q DS + E++ L + KK KT + R +
Sbjct: 115 DPQERERRDISEYLSQMIDELERQYDSLQVEIDKLLLLNKKKKTSSTTNDEKKEQYKRFQ 174
Query: 61 A----HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPL 116
A H ++EL LRLL N+EL P+ V +V+D + +VE NQD +F + + +Y L L
Sbjct: 175 ARYRWHQQQMELALRLLANEELDPQDVKNVQDDINYFVESNQDP--DFVEDETIYDGLNL 232
Query: 117 DKVESL 122
E++
Sbjct: 233 QSNEAI 238
Score = 95 (38.5 bits), Expect = 3.2e-16, Sum P(3) = 3.2e-16
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 682 TLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDF 741
+LF+ +Y+ ++ +A K L ++ W+ + WF R E K N+ E G Y F
Sbjct: 707 SLFYNYYFAITPLEREIAYKILNERDWKVSKDGTMWFLRQGEVKFFNEICEVGDYKIFKL 766
Query: 742 HIANDDLQHGWCQRIKTEFTFEYNYLE 768
DD W K F +Y++L+
Sbjct: 767 ----DD----WTVIDKINFRLDYSFLQ 785
Score = 70 (29.7 bits), Expect = 3.2e-16, Sum P(3) = 3.2e-16
Identities = 31/129 (24%), Positives = 59/129 (45%)
Query: 158 ISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQ 217
+ ++VTS +T+++ + A T +S +GS +TP + ++ +S+ P
Sbjct: 411 VEKDRKVTSASSTISNTSTKTPTTAAATTTSSNANSRIGSALNTPKLSTSS-LSLQ-PDN 468
Query: 218 T--LSNASNTSPVLP-GSSSVRG---VFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSS 271
T S+A+ + VL G+++V F S P V+L ++ K E ++
Sbjct: 469 TGASSSAATAAAVLAAGAAAVHQNNQAFYRNMSSSHHPLVSLATNPKSEHEVATTVNQNG 528
Query: 272 PSLTDVRVM 280
P T +VM
Sbjct: 529 PENTTKKVM 537
Score = 46 (21.3 bits), Expect = 9.0e-14, Sum P(3) = 9.0e-14
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 190 AKSSGVGST-ASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS 248
AK + +T A+ P GP++ S +P S + SP SSS + + T P +
Sbjct: 285 AKLAAKNATGAAIPVAGPSSTPSPVIPVADASKETERSP----SSSP--IHNATKP-EEA 337
Query: 249 PPVNLTSSTKEEDVGNFPGRRSSPS 273
++ S D P + SPS
Sbjct: 338 VKTSIKSPRSSAD-NLLPSLQKSPS 361
Score = 45 (20.9 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 22/98 (22%), Positives = 42/98 (42%)
Query: 187 TPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNT-GPI 245
T PAK +G A + + + T+SN S +P +++ ++ G
Sbjct: 392 TLPAKPAGELKWAVAASQAVEKDRKVTSASSTISNTSTKTPTTAAATTTSSNANSRIGSA 451
Query: 246 SSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRG 283
++P ++ +S + + D N G SS + T V+ G
Sbjct: 452 LNTPKLSTSSLSLQPD--N-TGASSSAA-TAAAVLAAG 485
Score = 45 (20.9 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 26/111 (23%), Positives = 45/111 (40%)
Query: 169 EQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNA-SNTSP 227
++ +A+ ++ ++V + G+T PA PA P A S A
Sbjct: 357 QKSPSSATPETPTNVHTHIHQTPNGITGATTLKPATLPAKPAGELKWAVAASQAVEKDRK 416
Query: 228 VLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVG---NFPGRRSSPSLT 275
V SS++ T P +++ TSS +G N P + S+ SL+
Sbjct: 417 VTSASSTISNTSTKT-PTTAA--ATTTSSNANSRIGSALNTP-KLSTSSLS 463
Score = 44 (20.5 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 16/92 (17%), Positives = 38/92 (41%)
Query: 179 SNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGV 238
S S ++ + +S +TA+ A + N A + +S+ P++ +++ +
Sbjct: 458 STSSLSLQPDNTGASSSAATAAAVLAAGAAAVHQNNQAFYRNMSSSHHPLVSLATNPKSE 517
Query: 239 FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRS 270
+ ++ + P N T E+ P R+
Sbjct: 518 HEVATTVNQNGPENTTKKVMEQKEEESPEERN 549
Score = 37 (18.1 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 636 KDSERARSYIPRHPAVTP 653
K++ER+ S P H A P
Sbjct: 317 KETERSPSSSPIHNATKP 334
>UNIPROTKB|H7C5J4 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C5J4 Ensembl:ENST00000471126 Bgee:H7C5J4
Uniprot:H7C5J4
Length = 88
Score = 195 (73.7 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 45/83 (54%), Positives = 48/83 (57%)
Query: 696 QYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQ-GTYVYFDFHIANDDLQ----- 749
QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQ ++ A Q
Sbjct: 2 QYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQIPDHLLVHSLTAFSPGQGTYIY 61
Query: 750 ---HGWCQRIKTEFTFEYNYLED 769
W QR K FTFEY YLED
Sbjct: 62 FDYEKWGQRKKEGFTFEYRYLED 84
>SGD|S000006276 [details] [associations]
symbol:NOT5 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IPI] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0030015 "CCR4-NOT core complex" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA;IPI]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0016567 "protein
ubiquitination" evidence=IMP] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IDA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IMP]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 SGD:S000006276
GO:GO:0005634 GO:GO:0005737 GO:GO:0016567 EMBL:Z71255 EMBL:BK006949
GO:GO:0006368 EMBL:U51033 EMBL:Z49219 GO:GO:0032968 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850
GeneTree:ENSGT00390000014743 GO:GO:0031087 OrthoDB:EOG4NW2V3
EMBL:AY692887 PIR:S54093 RefSeq:NP_015397.1
ProteinModelPortal:Q12514 DIP:DIP-2257N IntAct:Q12514
MINT:MINT-420084 STRING:Q12514 PaxDb:Q12514 PeptideAtlas:Q12514
EnsemblFungi:YPR072W GeneID:856186 KEGG:sce:YPR072W CYGD:YPR072w
OMA:HPTSIFF NextBio:981366 Genevestigator:Q12514 GermOnline:YPR072W
Uniprot:Q12514
Length = 560
Score = 123 (48.4 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 678 YGTDTLFFAFYYQQNTYQQYLAAKEL-KKQSWRYHRKYNTWFQRH-EEPKVANDEFEQGT 735
+ DTLFF FY+ Q +Y+Q+LAA+EL K ++W +++ W+ + E+ + E+ +
Sbjct: 472 FDLDTLFFIFYHYQGSYEQFLAARELFKNRNWLFNKVDRCWYYKEIEKLPPGMGKSEEES 531
Query: 736 YVYFDF 741
+ YFD+
Sbjct: 532 WRYFDY 537
Score = 116 (45.9 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 53 ETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDE 109
E RH+ HI LE IL+ L N+E+ PE V + +D ++ YVE N D DF E+ + E
Sbjct: 151 EEQTERHEFHIANLENILKKLQNNEMDPEPVEEFQDDIKYYVENNDDPDFIEYDTIYE 208
Score = 66 (28.3 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 21/91 (23%), Positives = 46/91 (50%)
Query: 1 MKDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHK 60
+KDPKE K + ++++ + EL+ Q++ +EA+ ++ + + +LE + + +
Sbjct: 116 IKDPKELKKRDQVLFIHDCLDELQKQLEQYEAQENEEQTERHEFH---IANLENILKKLQ 172
Query: 61 AHIMKLELILRLLDNDELSPEQVNDVKDLLE 91
+ M E + D+ + E ND D +E
Sbjct: 173 NNEMDPEPVEEFQDDIKYYVEN-NDDPDFIE 202
Score = 51 (23.0 bits), Expect = 3.3e-05, Sum P(3) = 3.3e-05
Identities = 29/120 (24%), Positives = 50/120 (41%)
Query: 16 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 75
++ L+ +++ I+ F+ E K T P +H E + K I KL+ +
Sbjct: 10 IDKLLKKVKEGIEDFDDIYE----KFQSTDPSNSSHREKLESDLKREIKKLQKHRDQIKT 65
Query: 76 DELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVK 135
LS E V D + +L ++ E F V++L K E+L + I P +K
Sbjct: 66 -WLSKEDVKDKQSVLMTNRRLIENGMERFKSVEKLMKTKQFSK-EALTNPDIIKDPKELK 123
Score = 47 (21.6 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 179 SNSDVAARTP--PAKSSGVGSTASTPAVGPATPISINVPAQTLSNAS 223
S SD A TP P S S +STP TP+S + P T+ + S
Sbjct: 256 SISD-RATTPIAPGVESASQSISSTP-----TPVSTDTPLHTVKDDS 296
>CGD|CAL0005191 [details] [associations]
symbol:orf19.6075 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030015 "CCR4-NOT core complex" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA] [GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0051726 "regulation of cell
cycle" evidence=IEA] [GO:0000749 "response to pheromone involved in
conjugation with cellular fusion" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 CGD:CAL0005191 GO:GO:0005634
GO:GO:0006355 EMBL:AACQ01000036 EMBL:AACQ01000035 eggNOG:COG5601
HOGENOM:HOG000246523 KO:K12605 RefSeq:XP_718935.1
RefSeq:XP_719037.1 STRING:Q5AB95 GeneID:3639296 GeneID:3639453
KEGG:cal:CaO19.13496 KEGG:cal:CaO19.6075 Uniprot:Q5AB95
Length = 182
Score = 157 (60.3 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 675 LDSYGTDTLFFAFYYQ-QNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEF 731
+ ++ +TLF+ FY + ++T Q+Y AA+EL ++WRYH+ W + EP + N +
Sbjct: 95 IQNFTDETLFYIFYMKPRDTLQEY-AARELVARNWRYHKGIQVWLTKDSNVEPVLINPDV 153
Query: 732 EQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLE 768
E+G Y++FD H W ++IK EF Y+ ++
Sbjct: 154 EKGVYIFFD--------PHNW-EKIKKEFVLHYSLVQ 181
>UNIPROTKB|F1MID5 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000001285 EMBL:DAAA02013212 EMBL:DAAA02013213
EMBL:DAAA02013214 EMBL:DAAA02013215 IPI:IPI00905002
UniGene:Bt.30639 Ensembl:ENSBTAT00000057053 ArrayExpress:F1MID5
Uniprot:F1MID5
Length = 403
Score = 153 (58.9 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 730
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 297 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 356
Query: 731 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 357 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 386
Score = 59 (25.8 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 31/112 (27%), Positives = 43/112 (38%)
Query: 168 QEQGEDTASQDSNSDVAARTPPAKSSGVGSTAS--TPAVGPATPISI-----NVPAQTLS 220
Q+ G + + SD A + G G+ P G A + + N +Q S
Sbjct: 78 QQNGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFS 137
Query: 221 NASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEEDVGNFPGRRSS 271
+ P LPGSS N S+ + TSST D FPG +SS
Sbjct: 138 IHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST---DGPKFPGDKSS 186
>UNIPROTKB|F1SH40 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
OMA:TQDFSIH GeneTree:ENSGT00390000001285 EMBL:CU467026
Ensembl:ENSSSCT00000000541 Uniprot:F1SH40
Length = 541
Score = 154 (59.3 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 41/123 (33%), Positives = 58/123 (47%)
Query: 649 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 708
P + P Y IV A + L YG D LF+ +Y Q LAA EL + W
Sbjct: 414 PFLMPIEYVTTVIHIVFQLA---AIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDW 470
Query: 709 RYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNY 766
RYH++ W R EP + + +E+GTY +FD N W +++ EF EY+
Sbjct: 471 RYHKEERVWITRAPGMEPTMKTNTYERGTYYFFD--CLN------W-RKVAKEFHLEYDK 521
Query: 767 LED 769
LE+
Sbjct: 522 LEE 524
Score = 61 (26.5 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 355 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 411
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 412 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 471
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 472 MNSVTSASLQQQP-NPIHQQSSQQ 494
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 59 (25.8 bits), Expect = 8.4e-09, Sum P(3) = 8.4e-09
Identities = 24/70 (34%), Positives = 30/70 (42%)
Query: 202 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEED 261
P VG T + N +Q S + P LPGSS N S+ TSS+ D
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTSSST--D 313
Query: 262 VGNFPGRRSS 271
FPG +SS
Sbjct: 314 GPKFPGDKSS 323
Score = 41 (19.5 bits), Expect = 8.4e-09, Sum P(3) = 8.4e-09
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 183 VAARTPPAKSSGVGSTA-STPAV 204
+ +RT SSG+GS + S+P++
Sbjct: 151 IPSRTNSMSSSGLGSPSRSSPSI 173
>MGI|MGI:1919318 [details] [associations]
symbol:Cnot2 "CCR4-NOT transcription complex, subunit 2"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001226 "RNA polymerase II transcription corepressor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010606 "positive
regulation of cytoplasmic mRNA processing body assembly"
evidence=ISO] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:2000036 "regulation of stem
cell maintenance" evidence=ISO] InterPro:IPR007282 Pfam:PF04153
MGI:MGI:1919318 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 CTD:4848 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH OrthoDB:EOG44MXRV
ChiTaRS:CNOT2 EMBL:AK011231 EMBL:AK078121 EMBL:AK149767
EMBL:BC043133 EMBL:BC063105 EMBL:BC065171 IPI:IPI00132821
IPI:IPI00410747 IPI:IPI00410748 RefSeq:NP_001032935.2
RefSeq:NP_001032936.2 RefSeq:NP_001032937.1 RefSeq:NP_082358.2
UniGene:Mm.351553 ProteinModelPortal:Q8C5L3 STRING:Q8C5L3
PhosphoSite:Q8C5L3 PaxDb:Q8C5L3 PRIDE:Q8C5L3
Ensembl:ENSMUST00000105265 Ensembl:ENSMUST00000105267
Ensembl:ENSMUST00000169921 GeneID:72068 KEGG:mmu:72068
UCSC:uc007hca.2 UCSC:uc007hcb.2 UCSC:uc007hcd.2
GeneTree:ENSGT00390000001285 InParanoid:Q8C5L3 NextBio:335352
Bgee:Q8C5L3 CleanEx:MM_CNOT2 Genevestigator:Q8C5L3
GermOnline:ENSMUSG00000020166 Uniprot:Q8C5L3
Length = 540
Score = 153 (58.9 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 730
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 731 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 61 (26.5 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 355 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 411
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 412 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 471
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 472 MNSVTSASLQQQP-NPIHQQSSQQ 494
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 60 (26.2 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 202 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 260
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 312
Query: 261 DVGNFPGRRSS 271
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 183 VAARTPPAKSSGVGS-TASTPAV 204
+ +RT SSG+GS S+P++
Sbjct: 151 IPSRTNSMSSSGLGSPNRSSPSI 173
>UNIPROTKB|E2QSF5 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
CTD:4848 KO:K12605 OMA:TQDFSIH GeneTree:ENSGT00390000001285
EMBL:AAEX03007054 EMBL:AAEX03007055 RefSeq:XP_850576.1
Ensembl:ENSCAFT00000000701 GeneID:474446 KEGG:cfa:474446
NextBio:20850458 Uniprot:E2QSF5
Length = 540
Score = 153 (58.9 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 730
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 731 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 61 (26.5 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 355 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 411
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 412 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 471
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 472 MNSVTSASLQQQP-NPIHQQSSQQ 494
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 57 (25.1 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 202 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 260
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 312
Query: 261 DVGNFPGRRSS 271
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 40 (19.1 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 183 VAARTPPAKSSGVGS-TASTPAV 204
+ +RT SSG+GS S+P++
Sbjct: 151 IPSRTNSMSSSGLGSPNRSSPSI 173
>UNIPROTKB|Q9NZN8 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=TAS] [GO:0005634
"nucleus" evidence=NAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=NAS] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0010606 "positive regulation
of cytoplasmic mRNA processing body assembly" evidence=IMP]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0001226 "RNA polymerase
II transcription corepressor binding" evidence=IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:2000036 "regulation of stem cell
maintenance" evidence=IMP] [GO:0033147 "negative regulation of
intracellular estrogen receptor signaling pathway" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR007282
Pfam:PF04153 GO:GO:0005829 GO:GO:0005634 GO:GO:0000289
GO:GO:0001104 EMBL:AF180473 EMBL:AF113226 EMBL:AF161480
EMBL:AK000662 EMBL:AL137674 EMBL:BX641116 EMBL:BC002597
EMBL:BC011826 EMBL:AF044215 IPI:IPI00005011 IPI:IPI00017733
IPI:IPI00410621 IPI:IPI00410622 IPI:IPI00410623 PIR:T46494
RefSeq:NP_001186231.1 RefSeq:NP_001186232.1 RefSeq:NP_055330.1
UniGene:Hs.133350 UniGene:Hs.730666 ProteinModelPortal:Q9NZN8
DIP:DIP-42656N IntAct:Q9NZN8 MINT:MINT-1438957 STRING:Q9NZN8
PhosphoSite:Q9NZN8 DMDM:46396017 PaxDb:Q9NZN8 PRIDE:Q9NZN8
DNASU:4848 Ensembl:ENST00000229195 Ensembl:ENST00000418359
Ensembl:ENST00000551043 Ensembl:ENST00000551483 GeneID:4848
KEGG:hsa:4848 UCSC:uc001svv.3 UCSC:uc001svw.1 CTD:4848
GeneCards:GC12P070636 HGNC:HGNC:7878 MIM:604909 neXtProt:NX_Q9NZN8
PharmGKB:PA26673 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 InParanoid:Q9NZN8 KO:K12605 OMA:TQDFSIH
OrthoDB:EOG44MXRV PhylomeDB:Q9NZN8 ChiTaRS:CNOT2 GenomeRNAi:4848
NextBio:18670 ArrayExpress:Q9NZN8 Bgee:Q9NZN8 CleanEx:HS_CNOT2
Genevestigator:Q9NZN8 GermOnline:ENSG00000111596 Uniprot:Q9NZN8
Length = 540
Score = 153 (58.9 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 730
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 731 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 61 (26.5 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 355 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 411
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 412 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 471
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 472 MNSVTSASLQQQP-NPIHQQSSQQ 494
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 57 (25.1 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 202 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 260
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 312
Query: 261 DVGNFPGRRSS 271
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 40 (19.1 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 183 VAARTPPAKSSGVGS-TASTPAV 204
+ +RT SSG+GS S+P++
Sbjct: 151 IPSRTNSMSSSGLGSPNRSSPSI 173
>UNIPROTKB|F1M3V0 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00949675 Ensembl:ENSRNOT00000064732
ArrayExpress:F1M3V0 Uniprot:F1M3V0
Length = 493
Score = 153 (58.9 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 730
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 387 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 446
Query: 731 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 447 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 476
Score = 60 (26.2 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 202 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 260
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 210 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 265
Query: 261 DVGNFPGRRSS 271
D FPG +SS
Sbjct: 266 DGPKFPGDKSS 276
Score = 54 (24.1 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 424 GHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQ 483
G + LG+P+ G S P L + SQG+ + + GV +++ S S
Sbjct: 30 GQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGIL 85
Query: 484 P-NPIHQQSSQQ 494
P NP + + Q
Sbjct: 86 PMNPRNMMNHSQ 97
Score = 40 (19.1 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 183 VAARTPPAKSSGVGS-TASTPAV 204
+ +RT SSG+GS S+P++
Sbjct: 104 IPSRTNSMSSSGLGSPNRSSPSI 126
>UNIPROTKB|F1LUT7 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00734620 Ensembl:ENSRNOT00000058355
ArrayExpress:F1LUT7 Uniprot:F1LUT7
Length = 549
Score = 153 (58.9 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 730
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 443 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 502
Query: 731 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 503 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 532
Score = 61 (26.5 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 355 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 411
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 14 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 73
Query: 412 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 471
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 74 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 129
Query: 472 MNSVTSASLQQQP-NPIHQQSSQQ 494
+++ S S P NP + + Q
Sbjct: 130 LHTPPSPSRGILPMNPRNMMNHSQ 153
Score = 60 (26.2 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 202 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 260
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 266 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 321
Query: 261 DVGNFPGRRSS 271
D FPG +SS
Sbjct: 322 DGPKFPGDKSS 332
Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 183 VAARTPPAKSSGVGS-TASTPAV 204
+ +RT SSG+GS S+P++
Sbjct: 160 IPSRTNSMSSSGLGSPNRSSPSI 182
>SGD|S000002324 [details] [associations]
symbol:CDC36 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0051726 "regulation of cell cycle"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0031087 "deadenylation-independent decapping
of nuclear-transcribed mRNA" evidence=IMP] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA;IPI] [GO:0000749 "response to pheromone
involved in conjugation with cellular fusion" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IGI;IMP;IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IMP] [GO:0016567
"protein ubiquitination" evidence=IMP] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] InterPro:IPR007282 Pfam:PF04153 SGD:S000002324
GO:GO:0005634 GO:GO:0005737 EMBL:BK006938 GO:GO:0016567
GO:GO:0000122 GO:GO:0051726 GO:GO:0006368 EMBL:Z67750 GO:GO:0032968
GO:GO:0000289 GO:GO:0030015 eggNOG:COG5601 HOGENOM:HOG000246523
KO:K12605 GeneTree:ENSGT00390000001285 GO:GO:0031087 EMBL:X03246
EMBL:X68020 GO:GO:0000749 OrthoDB:EOG4TB7MJ EMBL:X04287 EMBL:Z74213
EMBL:AY557644 PIR:S12304 RefSeq:NP_010116.1
ProteinModelPortal:P06100 DIP:DIP-590N IntAct:P06100
MINT:MINT-400720 STRING:P06100 PaxDb:P06100 PeptideAtlas:P06100
EnsemblFungi:YDL165W GeneID:851389 KEGG:sce:YDL165W CYGD:YDL165w
OMA:WAETSRS NextBio:968543 Genevestigator:P06100 GermOnline:YDL165W
Uniprot:P06100
Length = 191
Score = 143 (55.4 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 50/153 (32%), Positives = 77/153 (50%)
Query: 601 IGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYI-PRHPAVTPPSY--- 656
+G LS S G D + ++L++ ++ P +E +RS + PR TP S+
Sbjct: 30 LGADLSSMLYSLGIPRDSQ-DHRVLDT--FQSPW---AETSRSEVEPRF--FTPESFTNI 81
Query: 657 PQVQAPIVSNPAF------WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRY 710
P V V+ P F +R++L + +TLFF FY T Q L EL+K++WRY
Sbjct: 82 PGVLQSTVTPPCFNSIQNDQQRVAL--FQDETLFFLFYKHPGTVIQELTYLELRKRNWRY 139
Query: 711 HRKYNTWFQRHE--EPKVANDEF-EQGTYVYFD 740
H+ W + EP V+ D E+G+YV+FD
Sbjct: 140 HKTLKAWLTKDPMMEPIVSADGLSERGSYVFFD 172
>UNIPROTKB|F1LY92 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00366212 Ensembl:ENSRNOT00000006779
ArrayExpress:F1LY92 Uniprot:F1LY92
Length = 531
Score = 153 (58.9 bits), Expect = 9.8e-09, Sum P(3) = 9.8e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 730
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 425 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 484
Query: 731 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 485 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 514
Score = 60 (26.2 bits), Expect = 9.8e-09, Sum P(3) = 9.8e-09
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 202 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 260
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 248 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 303
Query: 261 DVGNFPGRRSS 271
D FPG +SS
Sbjct: 304 DGPKFPGDKSS 314
Score = 56 (24.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 23/120 (19%), Positives = 42/120 (35%)
Query: 376 FTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGG 435
F + + N + +Q+ R ++ G + LG+P+ G
Sbjct: 20 FVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRG 79
Query: 436 NKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 494
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 80 ----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 135
Score = 40 (19.1 bits), Expect = 9.8e-09, Sum P(3) = 9.8e-09
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 183 VAARTPPAKSSGVGS-TASTPAV 204
+ +RT SSG+GS S+P++
Sbjct: 142 IPSRTNSMSSSGLGSPNRSSPSI 164
>UNIPROTKB|H0YHT6 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7878 ChiTaRS:CNOT2 EMBL:AC025569
EMBL:AC092881 Ensembl:ENST00000551710 Bgee:H0YHT6 Uniprot:H0YHT6
Length = 104
Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 730
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 17 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 76
Query: 731 FEQGTYVYFD 740
+E+GTY +FD
Sbjct: 77 YERGTYYFFD 86
>UNIPROTKB|F8VV52 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 IPI:IPI00017733 HGNC:HGNC:7878 ChiTaRS:CNOT2
EMBL:AC025569 EMBL:AC092881 PRIDE:F8VV52 Ensembl:ENST00000548159
ArrayExpress:F8VV52 Bgee:F8VV52 Uniprot:F8VV52
Length = 531
Score = 153 (58.9 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 730
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 425 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 484
Query: 731 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 485 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 514
Score = 57 (25.1 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 202 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 260
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 248 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 303
Query: 261 DVGNFPGRRSS 271
D FPG +SS
Sbjct: 304 DGPKFPGDKSS 314
Score = 56 (24.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 23/120 (19%), Positives = 42/120 (35%)
Query: 376 FTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGG 435
F + + N + +Q+ R ++ G + LG+P+ G
Sbjct: 20 FVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRG 79
Query: 436 NKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 494
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 80 ----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 135
Score = 40 (19.1 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 183 VAARTPPAKSSGVGS-TASTPAV 204
+ +RT SSG+GS S+P++
Sbjct: 142 IPSRTNSMSSSGLGSPNRSSPSI 164
>UNIPROTKB|E1BCE7 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
OMA:TQDFSIH GeneTree:ENSGT00390000001285 EMBL:DAAA02013212
EMBL:DAAA02013213 EMBL:DAAA02013214 EMBL:DAAA02013215
IPI:IPI00692269 Ensembl:ENSBTAT00000004880 ArrayExpress:E1BCE7
Uniprot:E1BCE7
Length = 540
Score = 153 (58.9 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 730
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 731 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 57 (25.1 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 202 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 260
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 312
Query: 261 DVGNFPGRRSS 271
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 56 (24.8 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 23/120 (19%), Positives = 42/120 (35%)
Query: 376 FTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGG 435
F + + N + +Q+ R ++ G + LG+P+ G
Sbjct: 29 FVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRG 88
Query: 436 NKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 494
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 89 ----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 40 (19.1 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 183 VAARTPPAKSSGVGS-TASTPAV 204
+ +RT SSG+GS S+P++
Sbjct: 151 IPSRTNSMSSSGLGSPNRSSPSI 173
>ZFIN|ZDB-GENE-070410-70 [details] [associations]
symbol:zgc:162316 "zgc:162316" species:7955 "Danio
rerio" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 ZFIN:ZDB-GENE-070410-70
GO:GO:0005634 GO:GO:0006355 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH OrthoDB:EOG44MXRV
GeneTree:ENSGT00390000001285 EMBL:CR376836 EMBL:CR382363
EMBL:BC134959 IPI:IPI00799285 RefSeq:NP_001082993.1
UniGene:Dr.78739 STRING:A4QN63 Ensembl:ENSDART00000088383
GeneID:100037372 KEGG:dre:100037372 InParanoid:A4QN63
NextBio:20788534 Uniprot:A4QN63
Length = 520
Score = 162 (62.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 730
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 414 IKLGRYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNT 473
Query: 731 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+E+GTY +FD H W +++ EF EY+ LE+
Sbjct: 474 YERGTYYFFDCH--------NW-RKVAKEFHLEYDKLEE 503
Score = 46 (21.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 39/192 (20%), Positives = 70/192 (36%)
Query: 187 TPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVF--DNTGP 244
+P SSG S GP + + ++ SN +P L S +G ++ P
Sbjct: 40 SPSPSSSGQLSQLGASLYGPQSALGFSIRGM-----SNNNPQL-NRSLTQGTQLPSHSTP 93
Query: 245 ISSSPPVNLTSSTKEEDVGNFP-GRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPS 303
+ P ++L ++ + G P R+ S + MG G + PS
Sbjct: 94 TTGVPTMSLHTTPPSPNRGILPMNTRNMMSSQVGQGMGMSGRTNSMGSSGLGSPNRSSPS 153
Query: 304 NGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSL-VSPLSNRMILSQAAKGNDGTGSIDS 362
+ +P + + + G G Q ++ LSN + G DG+ ++
Sbjct: 154 ---IICMPKQQPARQPFTINSMSGFGM-GRSQGFGMNSLSNNIF-----NGTDGSENVTG 204
Query: 363 NNAGETVAMAGR 374
+ E A+A R
Sbjct: 205 IDLSEFPALADR 216
Score = 42 (19.8 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 22/123 (17%), Positives = 48/123 (39%)
Query: 378 PSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNK 437
P M + + FQ+++E + + Q + G + LG + G
Sbjct: 17 PDESMYYNQASMFQHRSEKDMLPSPSPSSSGQLSQLGASLY-----GPQSALGFSIRG-- 69
Query: 438 QFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLM 497
S NP L + +QG+ + + + GV +++ T S + P++ ++ + +
Sbjct: 70 --MSNNNPQLNRSLTQGTQLPSHSTPTTGVPTMSLHT-TPPSPNRGILPMNTRNMMSSQV 126
Query: 498 SGG 500
G
Sbjct: 127 GQG 129
>UNIPROTKB|Q5ZKI3 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR007282
Pfam:PF04153 GO:GO:0005634 GO:GO:0006355 eggNOG:COG5601
HOGENOM:HOG000246523 HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH
OrthoDB:EOG44MXRV GeneTree:ENSGT00390000001285 EMBL:AADN02009856
EMBL:AJ720101 IPI:IPI00592451 RefSeq:NP_001012826.1
UniGene:Gga.50456 UniGene:Gga.9400 STRING:Q5ZKI3
Ensembl:ENSGALT00000016314 GeneID:417851 KEGG:gga:417851
InParanoid:Q5ZKI3 NextBio:20821090 Uniprot:Q5ZKI3
Length = 520
Score = 153 (58.9 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 730
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 414 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 473
Query: 731 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 474 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 503
Score = 54 (24.1 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 424 GHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQ 483
G + LG+P+ G S P L + SQG+ + + GV +++ S S
Sbjct: 57 GQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGIL 112
Query: 484 P-NPIHQQSSQQ 494
P NP + + Q
Sbjct: 113 PMNPRNMMNHSQ 124
Score = 54 (24.1 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 25/71 (35%), Positives = 30/71 (42%)
Query: 202 PAVGPAT-PISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEE 260
P VG T P S +Q S + P LPGSS N S+ TSS+
Sbjct: 237 PYVGMVTKPASEQ--SQDFSIHNEDFPALPGSSYKDPTSSNDDNKSNLNTSGKTSSST-- 292
Query: 261 DVGNFPGRRSS 271
D FPG +SS
Sbjct: 293 DGPKFPGDKSS 303
Score = 40 (19.1 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 183 VAARTPPAKSSGVGS-TASTPAV 204
+ +RT SSG+GS S+P++
Sbjct: 131 IPSRTNSMSSSGLGSPNRSSPSI 153
>RGD|1311672 [details] [associations]
symbol:Cnot2 "CCR4-NOT transcription complex, subunit 2"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001226 "RNA polymerase II transcription corepressor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0010606 "positive regulation of
cytoplasmic mRNA processing body assembly" evidence=ISO]
[GO:0030014 "CCR4-NOT complex" evidence=ISO] [GO:0033147 "negative
regulation of intracellular estrogen receptor signaling pathway"
evidence=ISO] [GO:2000036 "regulation of stem cell maintenance"
evidence=ISO] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=ISO] InterPro:IPR007282 Pfam:PF04153 RGD:1311672
GO:GO:0005634 GO:GO:0006355 CTD:4848 eggNOG:COG5601
HOGENOM:HOG000246523 HOVERGEN:HBG051041 KO:K12605
GeneTree:ENSGT00390000001285 EMBL:BC087653 IPI:IPI00952054
RefSeq:NP_001011988.1 UniGene:Rn.99836 STRING:Q5PPJ8
Ensembl:ENSRNOT00000066396 GeneID:299805 KEGG:rno:299805
UCSC:RGD:1311672 InParanoid:Q5PPJ8 NextBio:645798
Genevestigator:Q5PPJ8 Uniprot:Q5PPJ8
Length = 429
Score = 142 (55.0 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 730
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 349 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 408
Query: 731 FEQGTYVYFD 740
+E+GTY +FD
Sbjct: 409 YERGTYYFFD 418
Score = 60 (26.2 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 202 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 260
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 172 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 227
Query: 261 DVGNFPGRRSS 271
D FPG +SS
Sbjct: 228 DGPKFPGDKSS 238
Score = 40 (19.1 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 183 VAARTPPAKSSGVGS-TASTPAV 204
+ +RT SSG+GS S+P++
Sbjct: 66 IPSRTNSMSSSGLGSPNRSSPSI 88
Score = 39 (18.8 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 441 SQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 494
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 5 SNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 59
>UNIPROTKB|Q52JK6 [details] [associations]
symbol:VIP2 "Probable NOT transcription complex subunit
VIP2" species:4100 "Nicotiana benthamiana" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0015074 "DNA integration" evidence=IMP]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
GO:GO:0006351 GO:GO:0015074 EMBL:DQ000202 Uniprot:Q52JK6
Length = 603
Score = 154 (59.3 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 38/122 (31%), Positives = 56/122 (45%)
Query: 621 NMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGT 680
N+ E+ + P E A+ P T P + P N A++ + LD
Sbjct: 463 NLNSAENLYKTFGSPWSDEPAKG----DPEFTVPQCYYAKQPPPLNQAYFSKFQLD---- 514
Query: 681 DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR--HEEPKVANDEFEQGTYVY 738
TLF+ FY Q AA EL + W YHR++ WF R + EP V + +E+G+Y+
Sbjct: 515 -TLFYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYIC 573
Query: 739 FD 740
FD
Sbjct: 574 FD 575
Score = 45 (20.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 39/157 (24%), Positives = 59/157 (37%)
Query: 250 PVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXAT--AVPSNGN- 306
P NL S+ + GN G S V+G G + GN
Sbjct: 34 PNNLPSALSQIPQGNSHGHSGMTSRGGTSVVGNPGYSSNTNGVGGSIPGILPTFAAIGNR 93
Query: 307 -----LGAVPLVSDVAKR------NILGAEE--RLGSSGMVQSLVSPLSNRMILSQAAKG 353
LG P++ + R NI+G R SSG S V L++R+ ++
Sbjct: 94 SSVPGLGVSPILGNAGPRMTNSVGNIVGGGNIGRSISSGAGLS-VPGLASRLNMN----A 148
Query: 354 NDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSF 390
N G+G++ N G M+G + S + GNS+
Sbjct: 149 NSGSGNL--NVQGPNRLMSGVLQQASPQVLSMLGNSY 183
Score = 43 (20.2 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 454 GSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSG 499
G +I G G+ PG+ S + + ++ Q + LMSG
Sbjct: 122 GGNIGRSISSGAGLSVPGLASRLNMNANSGSGNLNVQGPNR-LMSG 166
>TAIR|locus:505006107 [details] [associations]
symbol:NOT2a "Negative on TATA less2a" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR007282 Pfam:PF04153 EMBL:CP002684 GO:GO:0005634
GO:GO:0006355 EMBL:AC007583 eggNOG:COG5601 KO:K12605
HOGENOM:HOG000005739 IPI:IPI00852321 RefSeq:NP_001077478.1
UniGene:At.42289 PaxDb:A8MR45 PRIDE:A8MR45
EnsemblPlants:AT1G07705.2 GeneID:837284 KEGG:ath:AT1G07705
TAIR:At1g07705 InParanoid:A8MR45 OMA:RMNDADL PhylomeDB:A8MR45
ProtClustDB:CLSN2693279 Genevestigator:A8MR45 Uniprot:A8MR45
Length = 614
Score = 134 (52.2 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 29/92 (31%), Positives = 42/92 (45%)
Query: 649 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 708
P+ P + Q NP + +TLF+ FY Q AA EL + W
Sbjct: 492 PSKVDPEFSVPQCYYAKNPPPLHQGLFAKLLVETLFYVFYSMPKDEAQLYAANELYNRGW 551
Query: 709 RYHRKYNTWFQRHEEPKVANDEFEQGTYVYFD 740
YH+++ WF R EP V + +E+G+Y FD
Sbjct: 552 FYHKEHRLWFIRIGEPLVKTNAYERGSYHCFD 583
Score = 53 (23.7 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 68/297 (22%), Positives = 101/297 (34%)
Query: 211 SINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRS 270
S N+P LS S+ GSS N G + SP + S +GN G
Sbjct: 93 SSNIPV-ALSQMSH------GSSHGHSGLTNRGGLGVSPILGNVGSRMTSSMGNMVGGG- 144
Query: 271 SPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGS 330
T R + GG A S GN+G ++ V + LG+
Sbjct: 145 ----TMGRTLSSGGGLSIPSLGSRLNLAVNSGS-GNIGQNRMMGGVLPQGSPQVLSMLGN 199
Query: 331 S-----GMVQSLVSPLSN--RMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQ 383
S G+ Q+ V +++ M L ND T D NN + + R S G Q
Sbjct: 200 SYPSAGGLSQNHVQAMNSLSSMGLLNDMNSND-TSPFDINN--DFPQLTSR--PSSAGSQ 254
Query: 384 WRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHS-NLLGMPLGGNKQFSSQ 442
+ G+ + Q G + I +E G+ + P+ + +
Sbjct: 255 GQLGSRLK------QGLGISPIVQQNQEFSIQNEDFPALPGYKGSSADYPMDLHHKEQLH 308
Query: 443 QNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSG 499
+N +L SQ S+ G LG + TS QQQ SS + G
Sbjct: 309 ENSVLMM-QSQQLSMGRSGGFNLG------GAYTSHRPQQQQQHAQAVSSSGVSLHG 358
Score = 51 (23.0 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 590 IGRRSVSDLG-AIGDSLSGATVSSGG 614
+G R S +G +G G T+SSGG
Sbjct: 129 VGSRMTSSMGNMVGGGTMGRTLSSGG 154
Score = 50 (22.7 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 430 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQ--PNPI 487
G+ L G+ FSS P ++SQ G+GL NS+T QQ
Sbjct: 353 GVSLHGSDIFSSSHPP----YHSQ---TGGAPGIGLR-SMNSANSITGMGYDQQLIQQYQ 404
Query: 488 HQQSSQQ 494
HQQ+S Q
Sbjct: 405 HQQNSAQ 411
Score = 47 (21.6 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 192 SSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLP-GSSSVRGVFDNTGP 244
SSG G S P++G +++N + + VLP GS V + N+ P
Sbjct: 151 SSGGG--LSIPSLGSRLNLAVNSGSGNIGQNRMMGGVLPQGSPQVLSMLGNSYP 202
Score = 44 (20.5 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 451 NSQGS-SISAQAGLGLGVQAPGMNSVTSASLQQQPNPI 487
N G+ ++ AG LG + +N V SA +QQQ I
Sbjct: 50 NIHGNFNVPNLAG-SLGSRNSSLNGVPSAGVQQQNGSI 86
>FB|FBgn0017550 [details] [associations]
symbol:Rga "Regena" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IEA;NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0046331 "lateral inhibition" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR007282 Pfam:PF04153
EMBL:AE014297 GO:GO:0005634 GO:GO:0005737 GO:GO:0007095
GO:GO:0006355 GO:GO:0006351 GO:GO:0046331 EMBL:U75467 GO:GO:0030014
eggNOG:COG5601 KO:K12605 GeneTree:ENSGT00390000001285 EMBL:AY094772
EMBL:BT025208 RefSeq:NP_524239.2 RefSeq:NP_730966.1 UniGene:Dm.2486
STRING:Q94547 PaxDb:Q94547 PRIDE:Q94547 EnsemblMetazoa:FBtr0078741
GeneID:40683 KEGG:dme:Dmel_CG2161 UCSC:CG2161-RA CTD:40683
FlyBase:FBgn0017550 InParanoid:Q94547 OMA:KVTNIPA OrthoDB:EOG459ZWX
PhylomeDB:Q94547 ChiTaRS:Rga GenomeRNAi:40683 NextBio:820039
Bgee:Q94547 GermOnline:CG2161 Uniprot:Q94547
Length = 585
Score = 109 (43.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 681 DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVY 738
D LFF FY Q +AA EL + WRYH + W R + N E+GT+ Y
Sbjct: 491 DLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITRIPGIDQYEKNGTKERGTFYY 550
Query: 739 FD 740
FD
Sbjct: 551 FD 552
Score = 77 (32.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 42/181 (23%), Positives = 65/181 (35%)
Query: 194 GVGSTASTPAVGPAT--PISINVPAQTLSNASNTSPVLP-GSSSVRGVFDNTGPISSSPP 250
G GS STPA+ T P N Q ++P+ P GS F + G +
Sbjct: 149 GGGSDTSTPALLDPTEFPSLTNARGQNDQTLPQSNPLQPPGSKPYGNFFTSFGMVKQPTS 208
Query: 251 VNLTSSTKEEDVGNFPGRRSSPSLTDV--RVMGRGGXXXXXXXXXXXXXATAVPSNGNLG 308
+ ED PG ++S T+ V G GG T P N ++
Sbjct: 209 EQSEFTMSNEDFPALPGTQNSDGTTNAVGSVAGTGGSGGASTENHLD--GTEKPMN-SIV 265
Query: 309 AVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGET 368
S + N+ G +G +G+ ++ S + + G+ G G + N A
Sbjct: 266 VSGSASGSSGSNV-GV---VGGNGL-GAVGSGIGGLAVGGGGGAGSSGGGGVGGNAASGV 320
Query: 369 V 369
V
Sbjct: 321 V 321
>TAIR|locus:2174259 [details] [associations]
symbol:VIP2 "VIRE2 interacting protein 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0015074 "DNA integration" evidence=IMP]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0006351 GO:GO:0015074
eggNOG:COG5601 KO:K12605 EMBL:AB006705 EMBL:AK117230 EMBL:AF295433
IPI:IPI00536853 RefSeq:NP_568912.2 UniGene:At.24144 PaxDb:Q9FPW4
PRIDE:Q9FPW4 EnsemblPlants:AT5G59710.1 GeneID:836092
KEGG:ath:AT5G59710 TAIR:At5g59710 HOGENOM:HOG000005739
InParanoid:Q9FPW4 OMA:PEYLINM PhylomeDB:Q9FPW4
Genevestigator:Q9FPW4 Uniprot:Q9FPW4
Length = 614
Score = 132 (51.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 29/92 (31%), Positives = 41/92 (44%)
Query: 649 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 708
PA + + + P R S + + LF+ FY Q AA EL ++ W
Sbjct: 495 PAKSEVEFTVPNCYYATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGW 554
Query: 709 RYHRKYNTWFQRHEEPKVANDEFEQGTYVYFD 740
YH++ WF R EP V +E+GTY Y D
Sbjct: 555 FYHKELRVWFFRVGEPLVRAATYERGTYEYLD 586
Score = 52 (23.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 46/192 (23%), Positives = 76/192 (39%)
Query: 218 TLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGN--FPGRR----SS 271
T N+S S G G F + S++ PVNL+ + G+ P R +
Sbjct: 64 TSRNSSMNSIPSAGVQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHSGIPNRGLNVVGN 123
Query: 272 PSLTDVRVMGRGGXX-XXXXXXXXXXXATAVPSNGN---LG-AVPLVSDVAKRNILGAEE 326
P + G GG +VP G LG + P +++ + N++G
Sbjct: 124 PGFSS-NANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITN-SMGNMVGGGN 181
Query: 327 RLGSSGMVQSLVSP-LSNRMILSQAAKGNDGTG-SIDSNNA--GETVAMAGRVFTPSMGM 382
LG + L P LS+R+ L+ N G+G ++ N G + +V + +G
Sbjct: 182 -LGRNISSGGLSIPGLSSRLNLA----ANSGSGLNVQGQNRMMGGVLPQGSQVMS-MLGN 235
Query: 383 QWRTGNSFQNQN 394
+ TG +QN
Sbjct: 236 SYHTGGGPLSQN 247
Score = 43 (20.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 37/164 (22%), Positives = 57/164 (34%)
Query: 329 GSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGN 388
G SG+ ++ + N S A I S +AG ++ R P MG+ GN
Sbjct: 109 GHSGIPNRGLNVVGNPGFSSNANGVGGSIPGILSTSAG----LSNRNSVPGMGISQLLGN 164
Query: 389 SFQN-QNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQ-QNPL 446
S N G G + + G S+ L + + Q QN +
Sbjct: 165 SGPRITNSMGNMVGGGNLGRN------ISSGGLSIPGLSSRLNLAANSGSGLNVQGQNRM 218
Query: 447 LQQFNSQGSSISAQAG----LGLGVQAPG-MNSVTSASLQQQPN 485
+ QGS + + G G G + + SV + L PN
Sbjct: 219 MGGVLPQGSQVMSMLGNSYHTGGGPLSQNHVQSVNNMMLSDHPN 262
Score = 40 (19.1 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 472 MNSVTSASLQQQPN 485
MNS+ SA +QQ PN
Sbjct: 70 MNSIPSAGVQQ-PN 82
>DICTYBASE|DDB_G0284577 [details] [associations]
symbol:DDB_G0284577 "putative CCR4-NOT complex
subunit 2" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISS] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
InterPro:IPR007282 Pfam:PF04153 dictyBase:DDB_G0284577
GO:GO:0005634 GO:GO:0006355 GO:GO:0016567 EMBL:AAFI02000066
GO:GO:0030015 eggNOG:COG5601 KO:K12605 RefSeq:XP_638512.1
EnsemblProtists:DDB0237628 GeneID:8624662 KEGG:ddi:DDB_G0284577
OMA:HEEYQRK ProtClustDB:CLSZ2846720 Uniprot:Q54PG2
Length = 579
Score = 122 (48.0 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 662 PIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRH 721
P + +P F +++L +Y +TLF+ FY Q AA EL + WRYH++ W R
Sbjct: 433 PNLESPTF--KMNLFTY--ETLFYIFYSMPKDVLQLHAAIELYDRDWRYHKEGKIWLTRV 488
Query: 722 E--EPKVANDEFEQGTYVYFDFHI 743
+ EP + + FE G++ +FD I
Sbjct: 489 QGTEPNITST-FEVGSFFFFDVTI 511
Score = 60 (26.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 29/119 (24%), Positives = 49/119 (41%)
Query: 388 NSFQNQNEPGQ---FRGRTE-IAPDQREKFXXXXXXXXXXG----HSNLLGMPLGGNKQF 439
N QNQN+ Q FRG+ + + Q + +SN+ GMP GGN
Sbjct: 52 NQQQNQNQQNQQQNFRGQNQNMMGGQNQNNNNNNSSNINNNRVGNNSNINGMPTGGNMAT 111
Query: 440 SSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMS 498
+ ++ N+ ++ + + P ++S++ QQ P P QQ Q +S
Sbjct: 112 NINNMNMMNNNNNTNNNNNGR---------P----ISSSNSQQPPPPPQQQQQPQQPLS 157
>POMBASE|SPCC4G3.15c [details] [associations]
symbol:not2 "CCR4-Not complex subunit Not2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=IC] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0030015 "CCR4-NOT core
complex" evidence=ISO] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISO] InterPro:IPR007282 Pfam:PF04153 PomBase:SPCC4G3.15c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0006357 GO:GO:0000289 GO:GO:0030015 GO:GO:0006354
eggNOG:COG5601 HOGENOM:HOG000246523 PIR:T41361 RefSeq:NP_587823.2
STRING:P87240 EnsemblFungi:SPCC4G3.15c.1 GeneID:2538778
OrthoDB:EOG4TB7MJ NextBio:20799960 Uniprot:P87240
Length = 306
Score = 129 (50.5 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 37/120 (30%), Positives = 55/120 (45%)
Query: 653 PPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR 712
P Y V P PA + + + +TLF+ FY Q AA+EL ++WR+H+
Sbjct: 196 PACYKNVNPP----PAISK---IFQFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHK 248
Query: 713 KYNTWFQRHE--EPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+ W +P +FE+G Y++FD H W +RIK +F Y LED
Sbjct: 249 ELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIH---------W-KRIKKDFLLMYAALED 298
>UNIPROTKB|H7C3F5 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 Pfam:PF04065 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C3F5 Ensembl:ENST00000447684 Uniprot:H7C3F5
Length = 106
Score = 101 (40.6 bits), Expect = 0.00025, P = 0.00025
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR 45
DP +K K E WL N + L Q+D FE+E+E L+V+ K +
Sbjct: 34 DPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKK 76
>WB|WBGene00019273 [details] [associations]
symbol:H43E16.1 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] eggNOG:NOG12793
GeneTree:ENSGT00700000104630 EMBL:FO080627 RefSeq:NP_495358.1
ProteinModelPortal:Q9N5K0 PaxDb:Q9N5K0 EnsemblMetazoa:H43E16.1
GeneID:174101 KEGG:cel:CELE_H43E16.1 UCSC:H43E16.1 CTD:174101
WormBase:H43E16.1 InParanoid:Q9N5K0 OMA:NVVHSAG NextBio:882515
Uniprot:Q9N5K0
Length = 1203
Score = 128 (50.1 bits), Expect = 0.00033, P = 0.00032
Identities = 81/336 (24%), Positives = 118/336 (35%)
Query: 155 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINV 214
+T+ ST Q S + SQ + PP SS +T ST + T +S+
Sbjct: 622 STIGSTVTQAPSSSTSMGPSPSQSTAGSTMTSAPPVTSSSSANTGSTSS---GTTVSV-- 676
Query: 215 PAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSS---TKEEDVGNFPGRRS 270
QT +S TSPV SS + +G SS VN SS T+ +
Sbjct: 677 --QTTQVSSTTSPVASSSSQMTSTQQPSGSSSSIGSTVNQGSSSVTTQPPASSRSTASQG 734
Query: 271 SPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGS 330
S S + G +T+VPS+ GA S V + + L S
Sbjct: 735 SSSAQPIASSSTMGSTAGSSSPQPTASSTSVPSS--TGATSSGSTVGSSTMGSTQSSLPS 792
Query: 331 SGMVQ--SLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGN 388
S M S S ++N++ S + G T I S+ A + +G+ + G +
Sbjct: 793 STMTNTGSTGSTVTNQLA-SSSTYGASSTEPIASSTANPGSSTSGQTAVTTQG-----SS 846
Query: 389 SFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQ 448
S Q + G G T P + G G ++Q + Q
Sbjct: 847 STQTNSNTGS-TGSTVTNPPVSSSTSGSSSTQPIASSTANPGSSTSGTTVVTTQGSSSTQ 905
Query: 449 QFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP 484
+ GS+ G V P S TSAS QP
Sbjct: 906 TNPNTGST-------GSTVTQPSAFSSTSASSSTQP 934
>WB|WBGene00003825 [details] [associations]
symbol:ntl-2 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0019915 "lipid storage"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] InterPro:IPR007282 Pfam:PF04153
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006355 GO:GO:0040011 GO:GO:0040018 GO:GO:0019915
GO:GO:0040035 HOGENOM:HOG000246523 KO:K12605
GeneTree:ENSGT00390000001285 EMBL:FO080154 GeneID:173773
KEGG:cel:CELE_B0286.4 UCSC:B0286.4a.1 CTD:173773 NextBio:881031
PIR:T15310 RefSeq:NP_494772.1 ProteinModelPortal:Q10923
DIP:DIP-25406N IntAct:Q10923 MINT:MINT-1053402 STRING:Q10923
PRIDE:Q10923 EnsemblMetazoa:B0286.4a.1 EnsemblMetazoa:B0286.4a.2
WormBase:B0286.4a InParanoid:Q10923 OMA:THNHIRD ArrayExpress:Q10923
Uniprot:Q10923
Length = 444
Score = 120 (47.3 bits), Expect = 0.00064, P = 0.00064
Identities = 33/99 (33%), Positives = 43/99 (43%)
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVAND--E 730
L L+ D LF+ FY N Q AA EL + WR+H+ W R + V
Sbjct: 263 LRLNKVSEDVLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGN 322
Query: 731 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+E+G Y FD Q W ++I E EY LED
Sbjct: 323 YEKGHYNVFD--------QMQW-RKIPKELKLEYKELED 352
>UNIPROTKB|Q10923 [details] [associations]
symbol:ntl-2 "Protein NTL-2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0006355
GO:GO:0040011 GO:GO:0040018 GO:GO:0019915 GO:GO:0040035
HOGENOM:HOG000246523 KO:K12605 GeneTree:ENSGT00390000001285
EMBL:FO080154 GeneID:173773 KEGG:cel:CELE_B0286.4 UCSC:B0286.4a.1
CTD:173773 NextBio:881031 PIR:T15310 RefSeq:NP_494772.1
ProteinModelPortal:Q10923 DIP:DIP-25406N IntAct:Q10923
MINT:MINT-1053402 STRING:Q10923 PRIDE:Q10923
EnsemblMetazoa:B0286.4a.1 EnsemblMetazoa:B0286.4a.2
WormBase:B0286.4a InParanoid:Q10923 OMA:THNHIRD ArrayExpress:Q10923
Uniprot:Q10923
Length = 444
Score = 120 (47.3 bits), Expect = 0.00064, P = 0.00064
Identities = 33/99 (33%), Positives = 43/99 (43%)
Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVAND--E 730
L L+ D LF+ FY N Q AA EL + WR+H+ W R + V
Sbjct: 263 LRLNKVSEDVLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGN 322
Query: 731 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
+E+G Y FD Q W ++I E EY LED
Sbjct: 323 YEKGHYNVFD--------QMQW-RKIPKELKLEYKELED 352
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.129 0.366 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 773 697 0.00081 121 3 11 23 0.48 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 49
No. of states in DFA: 618 (66 KB)
Total size of DFA: 340 KB (2170 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 75.79u 0.14s 75.93t Elapsed: 00:00:03
Total cpu time: 75.80u 0.14s 75.94t Elapsed: 00:00:03
Start: Sat May 11 02:33:54 2013 End: Sat May 11 02:33:57 2013