BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004110
         (773 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3
           PE=1 SV=1
          Length = 751

 Score =  178 bits (451), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)

Query: 617 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 676
           +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665

Query: 677 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 736
              T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722

Query: 737 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
           +YFD+          W QR K  FTFEY YLED
Sbjct: 723 IYFDY--------EKWGQRKKEGFTFEYRYLED 747



 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 11/135 (8%)

Query: 3   DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK-----KGKTRPPRLTHLETSIT 57
           DP +K K E   WL N +  L  Q+D FE+E+E L+V+       K +  R+  L+  I 
Sbjct: 115 DPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIE 174

Query: 58  RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPL 116
           +H+ H+  LE ILR+LDND +  + +  +KD +E YV+ +QD DFEE    + LY  L L
Sbjct: 175 KHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEE---NEFLYDDLDL 231

Query: 117 DKVESLEDLVTIGPP 131
           + +   + LV   PP
Sbjct: 232 EDIP--QALVATSPP 244


>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3
           PE=1 SV=1
          Length = 753

 Score =  178 bits (451), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)

Query: 617 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 676
           +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667

Query: 677 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 736
              T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724

Query: 737 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
           +YFD+          W QR K  FTFEY YLED
Sbjct: 725 IYFDY--------EKWGQRKKEGFTFEYRYLED 749



 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 11/135 (8%)

Query: 3   DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK-----KGKTRPPRLTHLETSIT 57
           DP +K K E   WL N +  L  Q+D FE+E+E L+V+       K +  R+  L+  I 
Sbjct: 115 DPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIE 174

Query: 58  RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPL 116
           +H+ H+  LE ILR+LDND +  + +  +KD +E YV+ +QD DFEE    + LY  L L
Sbjct: 175 KHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEE---NEFLYDDLDL 231

Query: 117 DKVESLEDLVTIGPP 131
           + +   + LV   PP
Sbjct: 232 EDIP--QALVATSPP 244


>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=not3 PE=1 SV=2
          Length = 640

 Score =  145 bits (367), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 99/173 (57%), Gaps = 12/173 (6%)

Query: 598 LGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYP 657
           L  + ++L+ +     G  D+    + L  +   +P   D+ + + YIP+ P   P  YP
Sbjct: 475 LKDLVNALNTSKEQHKGAIDKEKLTEALNISCVYVPDATDAAKPQYYIPKDPYPVPHYYP 534

Query: 658 QVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTW 717
           Q   P+  +    E +       DTLF+ FYY+  TYQQY+A +ELKKQSWR+H+KY TW
Sbjct: 535 QQPLPLFDSSEMTELV-----DPDTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTW 589

Query: 718 FQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 770
           FQRHEEPK+  DEFE G+Y YFDF       +  W QR K +F F Y YLED+
Sbjct: 590 FQRHEEPKMITDEFESGSYRYFDF-------EGDWVQRKKADFRFTYQYLEDD 635



 Score = 97.4 bits (241), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 132/266 (49%), Gaps = 43/266 (16%)

Query: 3   DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL--TVKKGKTRPPRLTHL---ETSIT 57
           DPKEK K +T  W++N V ELE Q +  EAE E L  T K+GK    +L+HL   E+ I 
Sbjct: 114 DPKEKEKQDTIQWISNAVEELERQAELIEAEAESLKATFKRGKKDLSKLSHLSELESRIE 173

Query: 58  RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLD 117
           RHK H  KLELI+R L+N ++SPE VND+++ +  YVE +Q   E+F++ + LY  L LD
Sbjct: 174 RHKWHQDKLELIMRRLENSQISPEAVNDIQEDIMYYVECSQS--EDFAEDENLYDELNLD 231

Query: 118 KVESLEDLVTIG------------------PPGLVKGAPALSLKASLAASASQM--PATV 157
           +  +  D    G                     L++       K S  AS   +    ++
Sbjct: 232 EASASYDAERSGRSSSSSHSPSPSASSSSSSENLLQDKAEAEEKVSADASVQDIAEKESL 291

Query: 158 ISTHQQVTSVQEQGED------------TASQDSNSDVAARTPPAKSSGVGS-TASTPAV 204
            +  +  T+ QE  E+            + +++  S+V    P A +S V + T  T   
Sbjct: 292 DADKELATNDQEDDEEENQAETQKDGAISNNENMQSEVQTTNPSASTSAVTNITKPTLIQ 351

Query: 205 GPATPISIN---VPAQTLSNASNTSP 227
            P+TP+S++   V +    NA++T+P
Sbjct: 352 NPSTPLSVSNSKVASPETPNATHTAP 377


>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment)
           OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1
          Length = 603

 Score = 69.7 bits (169), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 85/214 (39%), Gaps = 29/214 (13%)

Query: 564 AQVVRDTDLSPGQPLQSSQPSGGLGVIG--RRSVSDLGAIGDSLSGATVSSGGMHDQMYN 621
            Q  RD  L   Q   +  P G LG++   R S  DL ++   +   T+          N
Sbjct: 412 GQPFRDQSLKSMQSQVAPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLG--------LN 463

Query: 622 MQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTD 681
           +   E+ +     P   E A+      P  T P     + P   N A++ +  LD     
Sbjct: 464 LNSAENLYKTFGSPWSDEPAKG----DPEFTVPQCYYAKQPPPLNQAYFSKFQLD----- 514

Query: 682 TLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR--HEEPKVANDEFEQGTYVYF 739
           TLF+ FY       Q  AA EL  + W YHR++  WF R  + EP V  + +E+G+Y+ F
Sbjct: 515 TLFYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICF 574

Query: 740 DFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 773
           D         + W    K  F      LE   ++
Sbjct: 575 D--------PNTWETIHKDNFVLHCEMLEKRPVL 600


>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2
           PE=1 SV=1
          Length = 540

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)

Query: 649 PAVTPPSYPQ-----VQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAA 700
           P  + P  PQ     V +  ++N    ++L+   L  YG D LF+ +Y       Q LAA
Sbjct: 402 PWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAA 461

Query: 701 KELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKT 758
            EL  + WRYH++   W  R    EP +  + +E+GTY +FD           W +++  
Sbjct: 462 VELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDC--------LNW-RKVAK 512

Query: 759 EFTFEYNYLEDE 770
           EF  EY+ LE+ 
Sbjct: 513 EFHLEYDKLEER 524


>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2
           PE=2 SV=2
          Length = 540

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 11/100 (11%)

Query: 673 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 730
           + L  YG D LF+ +Y       Q LAA EL  + WRYH++   W  R    EP +  + 
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493

Query: 731 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 770
           +E+GTY +FD           W +++  EF  EY+ LE+ 
Sbjct: 494 YERGTYYFFDC--------LNW-RKVAKEFHLEYDKLEER 524


>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3
           OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
           GN=NOT3 PE=1 SV=2
          Length = 836

 Score = 60.1 bits (144), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 7/108 (6%)

Query: 3   DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETS------I 56
           DP+E+ + +  ++L+ ++ ELE Q DS + E++ L +   K +    T+ E         
Sbjct: 115 DPQERERRDISEYLSQMIDELERQYDSLQVEIDKLLLLNKKKKTSSTTNDEKKEQYKRFQ 174

Query: 57  TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE 103
            R++ H  ++EL LRLL N+EL P+ V +V+D +  +VE NQD DF E
Sbjct: 175 ARYRWHQQQMELALRLLANEELDPQDVKNVQDDINYFVESNQDPDFVE 222



 Score = 42.7 bits (99), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 682 TLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDF 741
           +LF+ +Y+     ++ +A K L ++ W+  +    WF R  E K  N+  E G Y  F  
Sbjct: 707 SLFYNYYFAITPLEREIAYKILNERDWKVSKDGTMWFLRQGEVKFFNEICEVGDYKIFKL 766

Query: 742 HIANDDLQHGWCQRIKTEFTFEYNYLE 768
               DD    W    K  F  +Y++L+
Sbjct: 767 ----DD----WTVIDKINFRLDYSFLQ 785


>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis
           thaliana GN=VIP2 PE=1 SV=2
          Length = 614

 Score = 59.7 bits (143), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%)

Query: 672 RLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEF 731
           R S   +  + LF+ FY       Q  AA EL ++ W YH++   WF R  EP V    +
Sbjct: 518 RASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVGEPLVRAATY 577

Query: 732 EQGTYVYFD 740
           E+GTY Y D
Sbjct: 578 ERGTYEYLD 586


>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2
           OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
           GN=CDC36 PE=1 SV=1
          Length = 191

 Score = 56.6 bits (135), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 76/170 (44%), Gaps = 44/170 (25%)

Query: 625 LESAFYKLPQPKDS--------------ERARSYI-PRHPAVTPPSY---PQVQAPIVSN 666
           L S  Y L  P+DS              E +RS + PR    TP S+   P V    V+ 
Sbjct: 34  LSSMLYSLGIPRDSQDHRVLDTFQSPWAETSRSEVEPRF--FTPESFTNIPGVLQSTVTP 91

Query: 667 PAF------WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR 720
           P F       +R++L  +  +TLFF FY    T  Q L   EL+K++WRYH+    W  +
Sbjct: 92  PCFNSIQNDQQRVAL--FQDETLFFLFYKHPGTVIQELTYLELRKRNWRYHKTLKAWLTK 149

Query: 721 --HEEPKVANDEF-EQGTYVYFDFHIANDDLQHGW--CQRIKTEFTFEYN 765
               EP V+ D   E+G+YV+FD           W  CQR   +F   YN
Sbjct: 150 DPMMEPIVSADGLSERGSYVFFD--------PQRWEKCQR---DFLLFYN 188


>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5
           OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
           GN=NOT5 PE=1 SV=1
          Length = 560

 Score = 56.2 bits (134), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 101/227 (44%), Gaps = 50/227 (22%)

Query: 1   MKDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHK 60
           +KDPKE  K +   ++++ + EL+ Q++ +EA+                   E    RH+
Sbjct: 116 IKDPKELKKRDQVLFIHDCLDELQKQLEQYEAQ-----------------ENEEQTERHE 158

Query: 61  AHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKV 119
            HI  LE IL+ L N+E+ PE V + +D ++ YVE N D DF E+   D +Y        
Sbjct: 159 FHIANLENILKKLQNNEMDPEPVEEFQDDIKYYVENNDDPDFIEY---DTIY-------- 207

Query: 120 ESLEDL-VTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQD 178
              ED+   I P      AP          +     +++ S+ +Q  S +++      +D
Sbjct: 208 ---EDMGCEIQPSSSNNEAPK-------EGNNQTSLSSIRSSKKQERSPKKKA---PQRD 254

Query: 179 SNSDVAARTP--PAKSSGVGSTASTPAVGPATPISINVPAQTLSNAS 223
            +    A TP  P   S   S +STP     TP+S + P  T+ + S
Sbjct: 255 VSISDRATTPIAPGVESASQSISSTP-----TPVSTDTPLHTVKDDS 296



 Score = 50.1 bits (118), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 6/68 (8%)

Query: 678 YGTDTLFFAFYYQQNTYQQYLAAKEL-KKQSWRYHRKYNTWFQRHEE---PKVANDEFEQ 733
           +  DTLFF FY+ Q +Y+Q+LAA+EL K ++W +++    W+ +  E   P +     E+
Sbjct: 472 FDLDTLFFIFYHYQGSYEQFLAARELFKNRNWLFNKVDRCWYYKEIEKLPPGMGKS--EE 529

Query: 734 GTYVYFDF 741
            ++ YFD+
Sbjct: 530 ESWRYFDY 537


>sp|P87240|NOT2_SCHPO General negative regulator of transcription subunit 2
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=not2 PE=1 SV=2
          Length = 306

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 20/121 (16%)

Query: 659 VQAPIVSNPAFWERLS-------LDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH 711
           V  P+   PA ++ ++       +  +  +TLF+ FY       Q  AA+EL  ++WR+H
Sbjct: 188 VSQPMFKLPACYKNVNPPPAISKIFQFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFH 247

Query: 712 RKYNTWFQ--RHEEPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLE 768
           ++   W       +P     +FE+G Y++FD  H         W +RIK +F   Y  LE
Sbjct: 248 KELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIH---------W-KRIKKDFLLMYAALE 297

Query: 769 D 769
           D
Sbjct: 298 D 298


>sp|Q94547|RGA_DROME Regulator of gene activity OS=Drosophila melanogaster GN=Rga PE=2
           SV=2
          Length = 585

 Score = 50.4 bits (119), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 681 DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKV----ANDEFEQGTY 736
           D LFF FY       Q +AA EL  + WRYH +   W  R   P +     N   E+GT+
Sbjct: 491 DLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITR--IPGIDQYEKNGTKERGTF 548

Query: 737 VYFD 740
            YFD
Sbjct: 549 YYFD 552


>sp|Q32MK0|MYLK3_HUMAN Myosin light chain kinase 3 OS=Homo sapiens GN=MYLK3 PE=2 SV=3
          Length = 819

 Score = 35.0 bits (79), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 18/148 (12%)

Query: 154 PATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 213
           P  V+ST    +  +E GE++   D     A R PP ++SG+G+  +   V P     + 
Sbjct: 171 PKHVLSTSGVQSDAREPGEESQKADVLEGTAERLPPIRASGLGADPAQAVVSPGQGDGVP 230

Query: 214 VPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRS--S 271
            PAQ            PG   +    +   P   +P  NL +     ++   PGR +  S
Sbjct: 231 GPAQ----------AFPGHLPLPTKVEAKAP--ETPSENLRTGL---ELAPAPGRVNVVS 275

Query: 272 PSLTDVRVMGRGGLSSQPSSSIPLSSAT 299
           PSL      G+G  SS+P    PL   T
Sbjct: 276 PSLEVAPGAGQGASSSRPDPE-PLEEGT 302


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.127    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 296,315,226
Number of Sequences: 539616
Number of extensions: 13288785
Number of successful extensions: 45486
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 632
Number of HSP's that attempted gapping in prelim test: 42347
Number of HSP's gapped (non-prelim): 2613
length of query: 773
length of database: 191,569,459
effective HSP length: 125
effective length of query: 648
effective length of database: 124,117,459
effective search space: 80428113432
effective search space used: 80428113432
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)