Query 004110
Match_columns 773
No_of_seqs 256 out of 446
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 17:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2150 CCR4-NOT transcription 100.0 2E-68 4.4E-73 585.2 32.7 144 614-770 431-574 (575)
2 COG5665 NOT5 CCR4-NOT transcri 100.0 4.2E-59 9E-64 492.1 21.8 122 637-770 425-546 (548)
3 PF04153 NOT2_3_5: NOT2 / NOT3 100.0 4.6E-38 1E-42 295.3 10.5 128 628-768 1-134 (134)
4 PF04065 Not3: Not1 N-terminal 100.0 8E-34 1.7E-38 288.6 12.8 116 2-119 113-233 (233)
5 COG5601 CDC36 General negative 100.0 1.6E-33 3.5E-38 268.1 2.5 159 587-768 6-172 (172)
6 KOG2151 Predicted transcriptio 99.5 1.6E-14 3.5E-19 152.5 3.4 105 584-708 203-312 (312)
7 KOG2151 Predicted transcriptio 99.2 6E-12 1.3E-16 133.3 4.9 133 600-769 37-175 (312)
8 PF03357 Snf7: Snf7; InterPro 95.9 0.032 6.9E-07 53.2 7.9 89 11-99 1-122 (171)
9 KOG2911 Uncharacterized conser 94.6 0.087 1.9E-06 59.4 7.3 87 13-99 235-355 (439)
10 PTZ00446 vacuolar sorting prot 93.0 0.43 9.4E-06 49.0 8.4 25 75-99 124-148 (191)
11 PF03962 Mnd1: Mnd1 family; I 92.2 1.4 3E-05 44.9 10.7 82 7-96 65-150 (188)
12 PTZ00464 SNF-7-like protein; P 91.9 0.72 1.6E-05 47.9 8.5 89 10-99 17-142 (211)
13 PHA00425 DNA packaging protein 90.7 0.54 1.2E-05 42.8 5.4 67 23-99 6-76 (88)
14 PF11123 DNA_Packaging_2: DNA 89.8 0.84 1.8E-05 41.2 5.8 67 23-99 4-74 (82)
15 PF01544 CorA: CorA-like Mg2+ 89.2 2 4.3E-05 43.8 8.9 79 14-97 121-208 (292)
16 PF07106 TBPIP: Tat binding pr 88.6 6.8 0.00015 38.6 11.8 76 20-95 81-159 (169)
17 KOG1656 Protein involved in gl 87.7 1.7 3.7E-05 45.5 7.2 106 10-115 20-167 (221)
18 KOG1655 Protein involved in va 83.8 5 0.00011 42.0 8.3 24 76-99 121-144 (218)
19 PF06013 WXG100: Proteins of 1 78.1 25 0.00054 29.1 9.3 70 2-73 4-74 (86)
20 PF05008 V-SNARE: Vesicle tran 76.1 17 0.00037 31.4 8.0 58 7-71 21-78 (79)
21 PF11932 DUF3450: Protein of u 76.1 14 0.00031 38.6 8.9 88 11-98 63-166 (251)
22 PF07352 Phage_Mu_Gam: Bacteri 75.9 10 0.00022 37.0 7.2 64 11-101 3-67 (149)
23 KOG3771 Amphiphysin [Intracell 75.3 1.8E+02 0.0038 34.3 18.1 8 89-96 206-213 (460)
24 KOG1899 LAR transmembrane tyro 73.9 1.4E+02 0.0031 36.4 16.8 97 6-103 194-298 (861)
25 PF07851 TMPIT: TMPIT-like pro 73.8 4.2 9.1E-05 45.2 4.5 48 49-96 34-83 (330)
26 COG4911 Uncharacterized conser 72.6 7 0.00015 37.6 5.1 71 10-83 10-81 (123)
27 PF11593 Med3: Mediator comple 70.9 62 0.0013 36.9 12.6 35 65-99 73-107 (379)
28 PF09755 DUF2046: Uncharacteri 70.3 11 0.00023 41.8 6.6 84 16-99 82-177 (310)
29 KOG2398 Predicted proline-seri 70.2 2.6E+02 0.0056 34.0 18.5 63 51-116 147-218 (611)
30 PF03962 Mnd1: Mnd1 family; I 69.8 12 0.00025 38.3 6.3 77 12-92 104-188 (188)
31 cd07648 F-BAR_FCHO The F-BAR ( 66.1 12 0.00025 39.2 5.7 14 86-99 236-249 (261)
32 PF07889 DUF1664: Protein of u 65.6 21 0.00047 34.8 6.9 69 13-92 38-107 (126)
33 PF14282 FlxA: FlxA-like prote 65.5 11 0.00024 35.2 4.8 56 17-72 18-76 (106)
34 cd00238 ERp29c ERp29 and ERp38 64.6 32 0.0007 31.7 7.5 39 52-90 48-87 (93)
35 cd00890 Prefoldin Prefoldin is 64.3 13 0.00027 34.3 4.9 33 6-38 82-114 (129)
36 PF10779 XhlA: Haemolysin XhlA 63.4 31 0.00068 30.0 6.9 34 48-94 21-54 (71)
37 PF08317 Spc7: Spc7 kinetochor 63.1 66 0.0014 35.2 10.8 48 46-95 243-290 (325)
38 PF00435 Spectrin: Spectrin re 62.5 55 0.0012 27.5 8.2 43 48-92 42-84 (105)
39 PRK10947 global DNA-binding tr 60.4 31 0.00067 34.1 7.0 37 48-84 40-76 (135)
40 PF10146 zf-C4H2: Zinc finger- 60.3 54 0.0012 34.9 9.3 17 17-33 31-47 (230)
41 PF11068 YlqD: YlqD protein; 58.8 34 0.00073 33.6 6.9 40 6-45 15-54 (131)
42 PRK10328 DNA binding protein, 58.7 34 0.00073 33.8 6.9 36 48-83 40-75 (134)
43 PF12325 TMF_TATA_bd: TATA ele 58.7 38 0.00083 32.8 7.2 78 13-93 18-108 (120)
44 PF10112 Halogen_Hydrol: 5-bro 58.5 53 0.0011 33.2 8.6 25 13-37 70-94 (199)
45 PF06005 DUF904: Protein of un 58.3 82 0.0018 28.1 8.6 57 8-75 15-71 (72)
46 PF02388 FemAB: FemAB family; 58.0 24 0.00053 39.6 6.7 54 19-72 243-298 (406)
47 KOG4438 Centromere-associated 57.9 50 0.0011 38.3 9.0 70 7-90 302-371 (446)
48 PF05667 DUF812: Protein of un 57.8 38 0.00081 40.5 8.4 81 8-89 325-405 (594)
49 PLN03188 kinesin-12 family pro 57.5 22 0.00047 45.7 6.6 49 5-54 878-926 (1320)
50 PRK04654 sec-independent trans 57.2 2.7E+02 0.0059 29.8 15.7 49 10-67 26-74 (214)
51 PRK09546 zntB zinc transporter 57.1 1E+02 0.0022 33.3 11.0 56 17-76 156-211 (324)
52 PF02996 Prefoldin: Prefoldin 57.1 15 0.00032 33.7 4.1 31 7-37 73-103 (120)
53 COG0598 CorA Mg2+ and Co2+ tra 56.2 66 0.0014 35.0 9.4 63 12-77 148-210 (322)
54 cd07627 BAR_Vps5p The Bin/Amph 54.8 91 0.002 32.1 9.7 78 19-97 116-199 (216)
55 PF10805 DUF2730: Protein of u 54.5 33 0.00071 32.1 5.9 72 7-78 31-103 (106)
56 PF04108 APG17: Autophagy prot 53.8 74 0.0016 36.1 9.6 77 19-99 45-140 (412)
57 PF05957 DUF883: Bacterial pro 53.8 53 0.0012 29.5 6.9 71 21-97 1-72 (94)
58 cd00584 Prefoldin_alpha Prefol 53.4 23 0.0005 33.2 4.8 32 6-37 82-113 (129)
59 PRK13729 conjugal transfer pil 53.1 31 0.00066 40.3 6.5 32 7-38 65-96 (475)
60 COG4026 Uncharacterized protei 52.6 1E+02 0.0023 33.4 9.7 39 48-92 164-202 (290)
61 PRK15422 septal ring assembly 52.1 1.1E+02 0.0023 28.3 8.4 34 5-38 12-45 (79)
62 PF08317 Spc7: Spc7 kinetochor 51.8 87 0.0019 34.3 9.5 25 14-38 145-169 (325)
63 PHA02562 46 endonuclease subun 51.8 1E+02 0.0022 35.2 10.4 27 48-74 256-282 (562)
64 PF03904 DUF334: Domain of unk 51.6 32 0.00069 36.8 5.9 80 13-95 52-134 (230)
65 PF00038 Filament: Intermediat 51.3 31 0.00067 36.6 5.9 29 8-36 185-213 (312)
66 KOG4398 Predicted coiled-coil 51.2 39 0.00085 37.4 6.6 72 18-96 5-76 (359)
67 TIGR01843 type_I_hlyD type I s 51.2 1.6E+02 0.0034 32.0 11.2 35 57-91 172-206 (423)
68 COG2433 Uncharacterized conser 50.9 50 0.0011 39.8 7.8 21 48-68 482-502 (652)
69 PRK03947 prefoldin subunit alp 49.8 28 0.0006 33.3 4.8 31 7-37 90-120 (140)
70 TIGR03007 pepcterm_ChnLen poly 49.1 1.5E+02 0.0032 33.8 11.0 97 7-103 157-276 (498)
71 PF10359 Fmp27_WPPW: RNA pol I 48.6 55 0.0012 37.8 7.7 68 11-78 163-231 (475)
72 TIGR01069 mutS2 MutS2 family p 48.5 59 0.0013 39.9 8.3 30 64-93 579-608 (771)
73 PF11932 DUF3450: Protein of u 47.2 2.1E+02 0.0046 30.1 11.1 17 48-64 85-101 (251)
74 PRK04406 hypothetical protein; 47.1 66 0.0014 28.8 6.3 47 19-73 5-51 (75)
75 PF10168 Nup88: Nuclear pore c 46.8 74 0.0016 38.9 8.7 26 50-75 600-625 (717)
76 PRK05431 seryl-tRNA synthetase 46.8 67 0.0014 36.6 7.9 62 22-96 39-102 (425)
77 TIGR03687 pupylate_cterm ubiqu 46.7 8.2 0.00018 30.0 0.5 22 81-102 3-24 (33)
78 PF04102 SlyX: SlyX; InterPro 46.7 88 0.0019 27.2 6.9 26 49-74 20-45 (69)
79 TIGR00383 corA magnesium Mg(2+ 46.6 1.1E+02 0.0025 32.4 9.2 62 15-76 139-204 (318)
80 TIGR00293 prefoldin, archaeal 46.5 20 0.00043 33.5 3.2 32 6-37 81-112 (126)
81 PRK09039 hypothetical protein; 46.5 41 0.00088 37.4 6.0 21 15-35 141-161 (343)
82 PF12729 4HB_MCP_1: Four helix 46.4 2.2E+02 0.0047 26.1 9.9 31 49-79 108-138 (181)
83 PF06120 Phage_HK97_TLTM: Tail 46.4 1.1E+02 0.0023 34.1 9.0 27 5-32 43-69 (301)
84 TIGR03185 DNA_S_dndD DNA sulfu 46.3 1.6E+02 0.0034 35.2 11.1 47 46-92 261-311 (650)
85 PF10234 Cluap1: Clusterin-ass 46.2 1E+02 0.0022 33.7 8.7 85 11-103 162-252 (267)
86 KOG0250 DNA repair protein RAD 46.2 41 0.00088 42.7 6.5 23 618-640 823-845 (1074)
87 PF09325 Vps5: Vps5 C terminal 46.0 1.2E+02 0.0025 30.7 8.8 52 46-97 162-219 (236)
88 PRK10780 periplasmic chaperone 45.8 1.8E+02 0.0039 28.9 9.8 85 13-98 45-137 (165)
89 PF07350 DUF1479: Protein of u 45.5 67 0.0015 37.1 7.6 43 72-115 77-120 (416)
90 PF10458 Val_tRNA-synt_C: Valy 45.4 1.1E+02 0.0025 26.1 7.3 56 18-73 4-65 (66)
91 PF05523 FdtA: WxcM-like, C-te 45.2 13 0.00029 35.6 1.8 33 678-721 29-61 (131)
92 smart00340 HALZ homeobox assoc 45.1 32 0.00069 28.4 3.6 27 12-38 6-32 (44)
93 smart00502 BBC B-Box C-termina 45.1 70 0.0015 28.6 6.3 70 6-75 16-100 (127)
94 PF05377 FlaC_arch: Flagella a 45.1 79 0.0017 27.2 6.1 48 20-75 2-49 (55)
95 cd00179 SynN Syntaxin N-termin 44.6 1E+02 0.0023 29.1 7.7 88 11-99 6-106 (151)
96 PF08946 Osmo_CC: Osmosensory 44.5 20 0.00044 29.8 2.5 30 9-38 3-32 (46)
97 PF11155 DUF2935: Domain of un 44.4 2.7E+02 0.0059 26.2 10.3 87 2-95 27-120 (124)
98 PRK11637 AmiB activator; Provi 44.0 30 0.00066 38.8 4.7 11 49-59 105-115 (428)
99 KOG3433 Protein involved in me 43.8 44 0.00095 35.0 5.3 29 8-36 78-106 (203)
100 PRK11637 AmiB activator; Provi 43.8 79 0.0017 35.6 7.9 7 88-94 159-165 (428)
101 PF05816 TelA: Toxic anion res 43.6 76 0.0016 34.9 7.5 77 2-78 61-154 (333)
102 smart00787 Spc7 Spc7 kinetocho 43.5 89 0.0019 34.6 8.0 78 14-96 140-219 (312)
103 PF08514 STAG: STAG domain ; 43.0 39 0.00084 32.2 4.5 45 12-57 73-117 (118)
104 PF05852 DUF848: Gammaherpesvi 42.9 1.7E+02 0.0036 29.6 9.0 18 80-97 95-112 (146)
105 PF02609 Exonuc_VII_S: Exonucl 42.8 55 0.0012 27.0 4.8 37 60-96 2-39 (53)
106 KOG0977 Nuclear envelope prote 42.7 1.3E+02 0.0028 36.0 9.5 69 2-70 34-115 (546)
107 PF04136 Sec34: Sec34-like fam 42.6 1.1E+02 0.0023 30.6 7.7 93 10-103 13-119 (157)
108 COG1730 GIM5 Predicted prefold 42.3 26 0.00056 35.0 3.3 33 6-38 89-121 (145)
109 cd00632 Prefoldin_beta Prefold 41.5 92 0.002 28.7 6.6 28 8-35 60-87 (105)
110 PRK04778 septation ring format 41.4 1.1E+02 0.0023 36.2 8.7 89 9-115 103-204 (569)
111 PLN03188 kinesin-12 family pro 41.2 3E+02 0.0065 36.2 12.7 104 20-124 448-575 (1320)
112 PRK00578 prfB peptide chain re 41.2 65 0.0014 36.5 6.6 49 48-97 60-108 (367)
113 KOG0260 RNA polymerase II, lar 40.9 2.7E+02 0.0059 36.5 12.1 21 79-99 1374-1394(1605)
114 PF04156 IncA: IncA protein; 40.8 1.8E+02 0.004 28.8 9.1 26 49-74 125-150 (191)
115 PF12761 End3: Actin cytoskele 40.7 1E+02 0.0022 32.4 7.4 64 22-92 100-171 (195)
116 COG3074 Uncharacterized protei 40.2 54 0.0012 29.7 4.6 31 7-37 14-44 (79)
117 PF00509 Hemagglutinin: Haemag 40.1 10 0.00022 44.6 0.3 53 46-99 402-459 (550)
118 PF09537 DUF2383: Domain of un 39.8 78 0.0017 28.8 5.8 60 11-76 1-60 (111)
119 PF04568 IATP: Mitochondrial A 39.7 39 0.00084 32.0 3.9 21 51-71 80-100 (100)
120 PHA03011 hypothetical protein; 39.6 1.2E+02 0.0025 29.4 7.0 55 15-90 61-115 (120)
121 PF13166 AAA_13: AAA domain 39.1 87 0.0019 37.0 7.6 46 48-94 371-416 (712)
122 TIGR01010 BexC_CtrB_KpsE polys 39.0 2.5E+02 0.0055 30.7 10.6 68 6-73 165-233 (362)
123 PF06160 EzrA: Septation ring 38.9 1E+02 0.0023 36.3 8.1 88 10-115 100-200 (560)
124 PF03920 TLE_N: Groucho/TLE N- 38.9 33 0.00071 34.1 3.4 32 10-41 22-53 (135)
125 PF02403 Seryl_tRNA_N: Seryl-t 38.7 1.3E+02 0.0029 27.4 7.2 50 21-70 39-90 (108)
126 KOG0981 DNA topoisomerase I [R 38.6 92 0.002 37.6 7.4 60 11-70 636-699 (759)
127 PF10153 DUF2361: Uncharacteri 38.6 1.3E+02 0.0029 29.0 7.3 77 17-94 20-102 (114)
128 PRK00591 prfA peptide chain re 38.6 1E+02 0.0022 35.0 7.6 81 16-97 4-91 (359)
129 PF11488 Lge1: Transcriptional 37.9 1.2E+02 0.0026 27.2 6.5 47 10-71 29-79 (80)
130 PHA03161 hypothetical protein; 37.9 2.9E+02 0.0062 28.2 9.7 59 11-97 54-112 (150)
131 PF10776 DUF2600: Protein of u 37.9 24 0.00052 39.5 2.6 84 45-128 158-274 (330)
132 PF10136 SpecificRecomb: Site- 37.7 1.8E+02 0.0039 35.5 9.8 76 20-97 212-289 (643)
133 PF06810 Phage_GP20: Phage min 37.6 32 0.00069 34.3 3.2 12 67-78 100-111 (155)
134 cd05024 S-100A10 S-100A10: A s 37.6 93 0.002 29.0 6.0 65 23-104 3-70 (91)
135 PRK10803 tol-pal system protei 37.5 98 0.0021 33.1 7.0 35 18-67 54-88 (263)
136 PRK11085 magnesium/nickel/coba 37.4 2.2E+02 0.0048 31.5 9.8 78 16-94 137-227 (316)
137 smart00338 BRLZ basic region l 37.2 2E+02 0.0044 24.2 7.5 46 10-70 18-63 (65)
138 PRK01433 hscA chaperone protei 37.1 1.1E+02 0.0023 36.5 7.8 49 61-118 542-593 (595)
139 PF04977 DivIC: Septum formati 37.0 41 0.0009 28.4 3.4 15 20-34 26-40 (80)
140 PRK10884 SH3 domain-containing 36.9 59 0.0013 34.0 5.1 52 18-73 93-144 (206)
141 COG0576 GrpE Molecular chapero 36.7 2E+02 0.0044 29.8 8.8 86 13-98 45-135 (193)
142 PHA03065 Hypothetical protein; 36.7 87 0.0019 36.4 6.7 50 45-97 85-134 (438)
143 PF09177 Syntaxin-6_N: Syntaxi 36.6 1.6E+02 0.0035 26.8 7.3 44 48-91 40-87 (97)
144 TIGR00414 serS seryl-tRNA synt 36.5 1.7E+02 0.0036 33.5 9.0 62 22-96 41-105 (418)
145 PF03961 DUF342: Protein of un 36.4 1.7E+02 0.0036 33.4 9.0 71 13-93 336-408 (451)
146 PF01025 GrpE: GrpE; InterPro 36.4 57 0.0012 31.7 4.7 84 15-98 22-109 (165)
147 KOG0996 Structural maintenance 36.0 1.1E+02 0.0024 39.5 8.0 30 9-38 863-898 (1293)
148 PRK05771 V-type ATP synthase s 35.6 79 0.0017 37.6 6.5 77 16-92 213-296 (646)
149 PF13815 Dzip-like_N: Iguana/D 35.6 1.5E+02 0.0032 28.1 7.2 27 11-37 66-92 (118)
150 PF05873 Mt_ATP-synt_D: ATP sy 35.6 36 0.00078 34.2 3.2 58 18-77 65-126 (161)
151 PF02050 FliJ: Flagellar FliJ 35.5 87 0.0019 27.5 5.3 57 10-67 51-107 (123)
152 KOG4603 TBP-1 interacting prot 35.3 3.8E+02 0.0083 28.2 10.3 80 12-97 87-168 (201)
153 KOG0996 Structural maintenance 35.3 82 0.0018 40.6 6.7 18 21-38 861-878 (1293)
154 PF10211 Ax_dynein_light: Axon 35.1 1E+02 0.0022 31.7 6.4 9 86-94 168-176 (189)
155 cd07674 F-BAR_FCHO1 The F-BAR 35.1 77 0.0017 33.6 5.8 14 86-99 236-249 (261)
156 PF06785 UPF0242: Uncharacteri 35.1 1E+02 0.0023 35.0 6.8 69 9-77 66-143 (401)
157 PRK09039 hypothetical protein; 35.0 1.5E+02 0.0033 33.0 8.2 50 47-96 137-187 (343)
158 PF12777 MT: Microtubule-bindi 34.8 1.7E+02 0.0036 32.4 8.4 73 14-94 238-311 (344)
159 PF06103 DUF948: Bacterial pro 34.8 2.4E+02 0.0053 25.0 8.0 27 11-37 26-52 (90)
160 COG3883 Uncharacterized protei 34.5 1E+02 0.0022 33.7 6.6 23 16-38 43-65 (265)
161 PF14257 DUF4349: Domain of un 34.4 1.1E+02 0.0023 32.3 6.6 25 47-71 132-156 (262)
162 PF04350 PilO: Pilus assembly 34.2 88 0.0019 29.2 5.4 68 20-99 1-68 (144)
163 COG0216 PrfA Protein chain rel 34.0 1.2E+02 0.0027 34.4 7.2 80 16-96 5-91 (363)
164 PF05062 RICH: RICH domain; I 34.0 2.8E+02 0.0061 25.7 8.3 28 4-31 3-30 (82)
165 smart00502 BBC B-Box C-termina 33.6 3E+02 0.0066 24.5 8.6 22 16-37 5-26 (127)
166 KOG4809 Rab6 GTPase-interactin 33.5 1.9E+02 0.0041 34.9 8.9 93 4-96 324-436 (654)
167 cd07673 F-BAR_FCHO2 The F-BAR 33.4 84 0.0018 33.7 5.8 13 86-98 243-255 (269)
168 PRK04098 sec-independent trans 33.4 4.1E+02 0.0089 27.3 10.1 69 11-92 27-95 (158)
169 PF07749 ERp29: Endoplasmic re 33.4 82 0.0018 28.9 4.9 40 50-90 48-88 (95)
170 TIGR01554 major_cap_HK97 phage 33.4 60 0.0013 35.8 4.8 19 21-39 2-20 (378)
171 COG1196 Smc Chromosome segrega 32.9 2.9E+02 0.0062 35.5 11.1 31 47-77 870-900 (1163)
172 cd00176 SPEC Spectrin repeats, 32.9 3.8E+02 0.0083 25.3 9.6 26 12-37 41-66 (213)
173 TIGR00634 recN DNA repair prot 32.8 3.8E+02 0.0083 31.5 11.3 15 23-37 187-201 (563)
174 KOG4484 Uncharacterized conser 32.6 1.7E+02 0.0037 30.5 7.4 34 62-95 94-130 (199)
175 PRK14155 heat shock protein Gr 32.6 1.9E+02 0.0041 30.6 7.9 81 16-98 25-114 (208)
176 PHA02562 46 endonuclease subun 32.4 1.6E+02 0.0035 33.7 8.1 26 13-38 301-326 (562)
177 TIGR03545 conserved hypothetic 32.2 1.9E+02 0.0041 34.5 8.8 29 12-40 176-206 (555)
178 smart00503 SynN Syntaxin N-ter 32.2 3.1E+02 0.0067 24.6 8.4 88 11-99 8-107 (117)
179 PRK06285 chorismate mutase; Pr 31.9 2E+02 0.0044 26.3 7.2 66 17-90 6-82 (96)
180 PRK00488 pheS phenylalanyl-tRN 31.5 67 0.0015 36.1 4.8 70 49-119 65-149 (339)
181 PRK14011 prefoldin subunit alp 31.5 1.3E+02 0.0029 29.9 6.4 33 6-38 83-115 (144)
182 PRK04778 septation ring format 31.4 1.8E+02 0.0038 34.4 8.4 33 63-95 454-490 (569)
183 PRK03918 chromosome segregatio 31.1 1.7E+02 0.0037 35.5 8.4 32 8-39 449-480 (880)
184 PF00170 bZIP_1: bZIP transcri 31.0 3.2E+02 0.007 23.0 8.1 28 10-37 18-45 (64)
185 cd05030 calgranulins Calgranul 31.0 3.8E+02 0.0081 23.9 8.6 63 22-84 2-74 (88)
186 KOG4348 Adaptor protein CMS/SE 30.9 72 0.0016 37.3 4.9 32 6-37 557-588 (627)
187 COG3937 Uncharacterized conser 30.8 2E+02 0.0043 27.9 7.1 61 9-69 41-105 (108)
188 PF05974 DUF892: Domain of unk 30.8 1.1E+02 0.0023 30.4 5.6 47 50-96 38-86 (159)
189 cd00089 HR1 Protein kinase C-r 30.8 1.4E+02 0.003 25.8 5.6 11 18-28 9-19 (72)
190 PRK04325 hypothetical protein; 30.8 2E+02 0.0043 25.6 6.7 27 48-74 24-50 (74)
191 PF06632 XRCC4: DNA double-str 30.6 1.8E+02 0.004 32.7 7.9 29 10-38 129-157 (342)
192 PF07139 DUF1387: Protein of u 30.6 2E+02 0.0044 32.1 8.1 44 55-98 216-260 (302)
193 PRK00736 hypothetical protein; 30.2 1.9E+02 0.0042 25.3 6.4 26 49-74 21-46 (68)
194 PRK02951 DNA replication termi 30.1 3.6E+02 0.0078 30.3 9.9 31 8-38 2-32 (309)
195 TIGR02894 DNA_bind_RsfA transc 30.0 2.9E+02 0.0062 28.5 8.4 10 10-19 83-92 (161)
196 PLN02678 seryl-tRNA synthetase 30.0 1.7E+02 0.0038 34.0 7.9 61 23-96 45-107 (448)
197 smart00435 TOPEUc DNA Topoisom 30.0 1.8E+02 0.0039 33.5 7.8 66 11-76 277-365 (391)
198 PRK11546 zraP zinc resistance 29.8 4E+02 0.0086 26.9 9.3 59 2-61 44-103 (143)
199 PF00816 Histone_HNS: H-NS his 29.8 37 0.00079 30.5 2.0 16 22-37 2-17 (93)
200 PF06657 Cep57_MT_bd: Centroso 29.8 43 0.00094 30.1 2.4 36 3-38 2-37 (79)
201 TIGR01791 CM_archaeal chorisma 29.7 1.7E+02 0.0036 25.8 6.1 19 20-38 1-19 (83)
202 PF11083 Streptin-Immun: Lanti 29.7 1.1E+02 0.0024 29.2 5.2 26 51-76 67-92 (99)
203 TIGR01280 xseB exodeoxyribonuc 29.6 92 0.002 27.3 4.3 39 61-99 5-44 (67)
204 PF01627 Hpt: Hpt domain; Int 29.6 2.4E+02 0.0053 23.4 6.9 37 58-96 50-86 (90)
205 KOG0995 Centromere-associated 29.5 1.4E+02 0.0031 35.8 7.1 79 6-84 303-409 (581)
206 TIGR00831 a_cpa1 Na+/H+ antipo 29.5 3.8E+02 0.0081 31.4 10.5 25 68-92 494-518 (525)
207 KOG0250 DNA repair protein RAD 29.4 1.7E+02 0.0037 37.6 8.0 64 12-76 662-725 (1074)
208 KOG0161 Myosin class II heavy 29.4 1.7E+02 0.0038 39.8 8.5 77 11-93 1055-1144(1930)
209 cd07596 BAR_SNX The Bin/Amphip 29.4 4.1E+02 0.009 26.0 9.4 76 21-97 120-201 (218)
210 PF06698 DUF1192: Protein of u 29.3 1.2E+02 0.0026 26.4 4.9 20 19-38 22-41 (59)
211 PF01923 Cob_adeno_trans: Coba 29.3 3.6E+02 0.0079 26.8 9.0 77 9-98 21-100 (163)
212 PF05508 Ran-binding: RanGTP-b 29.2 1.2E+02 0.0027 33.8 6.2 56 18-73 84-141 (302)
213 COG3945 Uncharacterized conser 29.1 1.5E+02 0.0032 31.2 6.3 49 49-97 7-58 (189)
214 PF09177 Syntaxin-6_N: Syntaxi 29.0 1.8E+02 0.004 26.4 6.4 30 7-36 35-64 (97)
215 PF09590 Env-gp36: Lentivirus 28.8 66 0.0014 38.2 4.3 34 6-41 45-78 (591)
216 PLN02320 seryl-tRNA synthetase 28.7 2.6E+02 0.0056 33.2 9.0 45 22-67 104-150 (502)
217 PRK00977 exodeoxyribonuclease 28.5 94 0.002 28.1 4.3 40 59-98 12-52 (80)
218 KOG2150 CCR4-NOT transcription 28.5 1E+03 0.022 29.1 13.6 95 1-112 112-222 (575)
219 PRK14158 heat shock protein Gr 28.3 1.9E+02 0.0042 30.2 7.1 51 48-98 85-137 (194)
220 PF05639 Pup: Pup-like protein 28.1 17 0.00036 32.5 -0.4 24 79-102 37-60 (69)
221 COG3096 MukB Uncharacterized p 28.0 1.8E+02 0.004 36.4 7.7 44 50-96 906-949 (1480)
222 PRK10865 protein disaggregatio 27.9 1.4E+02 0.003 37.1 7.1 41 19-59 411-451 (857)
223 PRK03918 chromosome segregatio 27.9 1.3E+02 0.0028 36.5 6.7 13 23-35 638-650 (880)
224 PRK09343 prefoldin subunit bet 27.8 1.5E+02 0.0032 28.4 5.8 72 19-96 32-114 (121)
225 cd07665 BAR_SNX1 The Bin/Amphi 27.7 2.3E+02 0.005 30.3 7.8 48 50-97 166-215 (234)
226 PF09787 Golgin_A5: Golgin sub 27.6 3.2E+02 0.0069 32.0 9.5 52 10-72 280-331 (511)
227 PF12718 Tropomyosin_1: Tropom 27.5 3.2E+02 0.0068 27.0 8.1 17 20-36 37-53 (143)
228 PF01166 TSC22: TSC-22/dip/bun 27.5 50 0.0011 28.9 2.3 28 10-37 13-40 (59)
229 PF12252 SidE: Dot/Icm substra 27.5 1.5E+02 0.0032 38.3 6.9 58 20-77 1065-1147(1439)
230 PF11176 DUF2962: Protein of u 27.4 1.9E+02 0.0041 29.0 6.7 48 5-57 64-111 (155)
231 KOG3705 Glycoprotein 6-alpha-L 27.4 62 0.0013 37.6 3.7 23 16-38 49-71 (580)
232 PRK04863 mukB cell division pr 27.2 2.7E+02 0.0058 37.2 9.6 52 48-99 405-456 (1486)
233 PF03938 OmpH: Outer membrane 27.1 3.6E+02 0.0078 25.8 8.4 91 11-102 36-134 (158)
234 PF08376 NIT: Nitrate and nitr 27.1 1.4E+02 0.0031 29.8 5.8 78 6-83 9-91 (247)
235 PF07106 TBPIP: Tat binding pr 27.0 1.9E+02 0.0041 28.6 6.6 25 13-37 81-105 (169)
236 KOG2509 Seryl-tRNA synthetase 27.0 1.1E+02 0.0023 35.9 5.4 69 19-96 49-118 (455)
237 PF10473 CENP-F_leu_zip: Leuci 27.0 1.5E+02 0.0033 29.6 5.8 54 16-69 57-116 (140)
238 TIGR00020 prfB peptide chain r 26.9 1.6E+02 0.0036 33.4 6.8 49 48-97 57-108 (364)
239 PRK02793 phi X174 lysis protei 26.9 2.4E+02 0.0051 25.0 6.5 27 48-74 23-49 (72)
240 TIGR00998 8a0101 efflux pump m 26.9 3.4E+02 0.0073 28.9 8.9 42 52-93 117-158 (334)
241 KOG2264 Exostosin EXT1L [Signa 26.7 1.7E+02 0.0037 35.5 7.0 68 19-99 80-153 (907)
242 cd07909 YciF YciF bacterial st 26.6 2.1E+02 0.0045 28.6 6.7 52 46-97 32-85 (147)
243 PRK07720 fliJ flagellar biosyn 26.6 1E+02 0.0022 29.7 4.5 59 12-71 72-130 (146)
244 PF08641 Mis14: Kinetochore pr 26.4 1.7E+02 0.0037 28.5 6.1 49 22-70 37-89 (139)
245 COG4467 Regulator of replicati 26.3 2.7E+02 0.0059 27.2 7.1 53 16-79 6-58 (114)
246 PF08657 DASH_Spc34: DASH comp 26.3 1.9E+02 0.0041 31.4 6.9 60 15-74 191-259 (259)
247 PF10228 DUF2228: Uncharacteri 26.2 85 0.0018 34.0 4.3 39 64-102 171-213 (253)
248 COG5509 Uncharacterized small 26.1 30 0.00064 30.5 0.7 21 19-39 26-46 (65)
249 PRK14066 exodeoxyribonuclease 26.1 1.1E+02 0.0024 27.5 4.3 39 59-97 6-45 (75)
250 PF09210 DUF1957: Domain of un 26.0 1.1E+02 0.0023 29.0 4.4 36 52-87 53-88 (102)
251 KOG1850 Myosin-like coiled-coi 25.9 3.2E+02 0.0069 31.2 8.6 140 10-158 228-389 (391)
252 cd07597 BAR_SNX8 The Bin/Amphi 25.9 4E+02 0.0087 28.3 9.1 67 6-91 105-183 (246)
253 PRK00295 hypothetical protein; 25.8 2.6E+02 0.0056 24.6 6.4 25 49-73 21-45 (68)
254 PF11853 DUF3373: Protein of u 25.6 42 0.0009 39.4 2.0 10 108-117 73-82 (489)
255 PF10267 Tmemb_cc2: Predicted 25.6 1.9E+02 0.0042 33.2 7.1 29 10-38 211-239 (395)
256 COG5124 Protein predicted to b 25.6 3.1E+02 0.0068 29.0 7.9 118 7-128 78-199 (209)
257 PF10079 DUF2317: Uncharacteri 25.5 1.2E+02 0.0025 36.1 5.6 58 54-120 478-535 (542)
258 PF10392 COG5: Golgi transport 25.5 1.5E+02 0.0033 28.4 5.5 34 48-81 66-99 (132)
259 PF08397 IMD: IRSp53/MIM homol 25.2 5E+02 0.011 26.9 9.5 32 6-37 90-121 (219)
260 PF14131 DUF4298: Domain of un 25.1 1.1E+02 0.0025 27.9 4.3 49 48-102 1-50 (90)
261 PF07798 DUF1640: Protein of u 24.8 2.7E+02 0.0059 28.0 7.3 22 17-38 72-93 (177)
262 PRK02119 hypothetical protein; 24.8 3.2E+02 0.0069 24.4 6.9 27 48-74 24-50 (73)
263 KOG0241 Kinesin-like protein [ 24.7 1.4E+02 0.003 38.2 6.1 18 19-36 365-382 (1714)
264 KOG0964 Structural maintenance 24.7 2.1E+02 0.0045 36.7 7.5 82 6-87 688-788 (1200)
265 PHA01794 hypothetical protein 24.6 4.4E+02 0.0096 26.5 8.3 37 56-92 91-128 (134)
266 PF12329 TMF_DNA_bd: TATA elem 24.4 3.7E+02 0.008 23.9 7.2 52 15-74 2-53 (74)
267 PHA03161 hypothetical protein; 24.3 3.3E+02 0.0071 27.9 7.6 36 49-86 56-91 (150)
268 PTZ00419 valyl-tRNA synthetase 24.3 1.7E+02 0.0036 37.0 6.9 58 17-74 928-991 (995)
269 PF02388 FemAB: FemAB family; 24.3 1E+02 0.0022 34.7 4.7 28 11-38 242-269 (406)
270 KOG0977 Nuclear envelope prote 24.3 2.4E+02 0.0052 33.9 7.8 18 80-97 203-220 (546)
271 PF13148 DUF3987: Protein of u 24.3 2.8E+02 0.0061 30.0 7.8 46 52-97 316-367 (378)
272 PF07716 bZIP_2: Basic region 24.2 1.7E+02 0.0036 24.1 4.8 26 12-37 26-51 (54)
273 KOG2011 Sister chromatid cohes 24.1 1.9E+02 0.0041 37.2 7.2 66 10-76 225-290 (1048)
274 PF10602 RPN7: 26S proteasome 24.1 2.4E+02 0.0053 28.3 6.8 57 14-75 3-61 (177)
275 PTZ00446 vacuolar sorting prot 24.1 2E+02 0.0043 30.1 6.3 89 11-99 27-126 (191)
276 PF12128 DUF3584: Protein of u 24.1 2.9E+02 0.0063 35.7 9.0 43 57-99 746-795 (1201)
277 PF07851 TMPIT: TMPIT-like pro 24.1 2.5E+02 0.0054 31.8 7.5 61 10-70 28-91 (330)
278 cd00584 Prefoldin_alpha Prefol 24.1 6E+02 0.013 23.8 9.7 21 50-70 90-110 (129)
279 PF09006 Surfac_D-trimer: Lung 24.1 61 0.0013 27.1 2.1 19 20-38 1-19 (46)
280 PRK07639 acyl carrier protein; 23.9 77 0.0017 28.5 3.0 42 84-127 8-49 (86)
281 PF11559 ADIP: Afadin- and alp 23.9 4.1E+02 0.0088 25.8 8.1 23 13-35 68-90 (151)
282 PF09606 Med15: ARC105 or Med1 23.9 26 0.00056 43.2 0.0 75 5-81 535-610 (799)
283 cd05023 S-100A11 S-100A11: S-1 23.8 4.1E+02 0.0089 24.0 7.6 39 22-60 3-41 (89)
284 TIGR01005 eps_transp_fam exopo 23.8 2.6E+02 0.0056 33.8 8.1 70 7-76 190-270 (754)
285 COG1283 NptA Na+/phosphate sym 23.7 6.4E+02 0.014 30.4 11.0 41 51-91 440-481 (533)
286 PF06008 Laminin_I: Laminin Do 23.7 2.5E+02 0.0054 29.7 7.2 87 17-103 44-146 (264)
287 KOG1161 Protein involved in va 23.6 3.5E+02 0.0076 30.5 8.4 44 49-96 65-108 (310)
288 PRK10476 multidrug resistance 23.6 3.2E+02 0.0069 29.7 8.1 75 19-93 87-164 (346)
289 PRK00888 ftsB cell division pr 23.5 1.7E+02 0.0037 27.5 5.3 16 20-35 29-44 (105)
290 cd02678 MIT_VPS4 MIT: domain c 23.5 4E+02 0.0086 23.2 7.2 45 54-99 21-65 (75)
291 PF04111 APG6: Autophagy prote 23.4 7.7E+02 0.017 27.3 11.0 15 53-67 96-110 (314)
292 PRK10869 recombination and rep 23.4 7.6E+02 0.016 29.4 11.6 18 8-25 182-199 (553)
293 PRK12704 phosphodiesterase; Pr 23.3 2.1E+02 0.0046 33.7 7.1 26 11-36 50-75 (520)
294 PF04740 LXG: LXG domain of WX 23.3 7.6E+02 0.016 24.7 11.3 29 10-38 9-37 (204)
295 PRK00409 recombination and DNA 23.3 3E+02 0.0065 34.1 8.6 24 15-38 517-540 (782)
296 COG3685 Uncharacterized protei 23.2 1.9E+02 0.0041 30.0 5.8 45 50-99 42-86 (167)
297 KOG0100 Molecular chaperones G 23.2 56 0.0012 38.1 2.4 25 80-104 598-623 (663)
298 TIGR01837 PHA_granule_1 poly(h 23.2 2.4E+02 0.0053 26.9 6.3 16 9-24 39-54 (118)
299 TIGR02132 phaR_Bmeg polyhydrox 23.2 5.7E+02 0.012 27.0 9.2 46 48-99 115-160 (189)
300 PF05565 Sipho_Gp157: Siphovir 23.1 1.2E+02 0.0026 30.2 4.5 14 83-96 77-90 (162)
301 TIGR02338 gimC_beta prefoldin, 23.0 2.5E+02 0.0055 26.2 6.3 25 9-33 65-89 (110)
302 PF10960 DUF2762: Protein of u 23.0 1.5E+02 0.0033 26.5 4.6 30 54-93 39-68 (71)
303 PF14193 DUF4315: Domain of un 22.9 3.4E+02 0.0073 25.0 6.8 24 69-92 39-62 (83)
304 PF04102 SlyX: SlyX; InterPro 22.9 1.3E+02 0.0029 26.1 4.2 24 13-36 13-36 (69)
305 TIGR00019 prfA peptide chain r 22.7 2.7E+02 0.0059 31.7 7.5 80 16-97 5-91 (360)
306 PF05529 Bap31: B-cell recepto 22.7 2.1E+02 0.0046 28.8 6.1 19 47-65 161-179 (192)
307 PF00038 Filament: Intermediat 22.6 2.5E+02 0.0055 29.9 7.0 76 9-98 207-286 (312)
308 cd07602 BAR_RhoGAP_OPHN1-like 22.6 3.7E+02 0.008 28.5 8.0 23 50-72 145-167 (207)
309 cd07604 BAR_ASAPs The Bin/Amph 22.6 2.3E+02 0.005 29.8 6.6 56 19-74 105-174 (215)
310 PRK14069 exodeoxyribonuclease 22.6 1.4E+02 0.0029 28.3 4.3 39 60-98 11-50 (95)
311 TIGR00293 prefoldin, archaeal 22.4 3.2E+02 0.007 25.5 6.9 27 12-38 14-40 (126)
312 KOG3802 Transcription factor O 22.3 1.3E+02 0.0028 34.7 5.0 19 72-90 313-331 (398)
313 cd08065 MPN_eIF3h Mpr1p, Pad1p 22.3 2.6E+02 0.0057 29.9 7.0 61 13-81 202-264 (266)
314 PF13864 Enkurin: Calmodulin-b 22.2 57 0.0012 29.9 1.8 22 18-39 44-65 (98)
315 PHA02047 phage lambda Rz1-like 22.2 3.8E+02 0.0083 25.8 7.1 39 48-99 42-80 (101)
316 PF02949 7tm_6: 7tm Odorant re 22.1 1.6E+02 0.0035 29.6 5.2 52 18-69 141-192 (313)
317 PF04799 Fzo_mitofusin: fzo-li 22.1 2.5E+02 0.0054 29.1 6.4 61 16-97 107-167 (171)
318 PRK05729 valS valyl-tRNA synth 22.0 2E+02 0.0042 35.8 6.8 56 18-73 811-872 (874)
319 PF04959 ARS2: Arsenite-resist 22.0 2.5E+02 0.0054 29.9 6.6 17 80-97 102-118 (214)
320 PF06705 SF-assemblin: SF-asse 22.0 1.1E+02 0.0025 32.0 4.2 54 48-104 144-201 (247)
321 PF10083 DUF2321: Uncharacteri 21.9 1.2E+02 0.0025 31.1 4.0 40 58-97 77-117 (158)
322 PF13801 Metal_resist: Heavy-m 21.8 5.5E+02 0.012 22.5 9.0 80 2-82 42-122 (125)
323 PF10368 YkyA: Putative cell-w 21.8 3.1E+02 0.0067 28.6 7.2 31 63-93 142-172 (204)
324 COG3883 Uncharacterized protei 21.7 4E+02 0.0087 29.4 8.3 25 13-37 54-78 (265)
325 PRK09281 F0F1 ATP synthase sub 21.6 2.5E+02 0.0054 33.2 7.2 47 50-96 451-499 (502)
326 PRK01156 chromosome segregatio 21.5 3E+02 0.0064 33.9 8.1 80 6-95 464-550 (895)
327 PRK11199 tyrA bifunctional cho 21.4 2.4E+02 0.0053 31.4 6.8 81 18-99 3-87 (374)
328 PF08537 NBP1: Fungal Nap bind 21.3 2.3E+02 0.0051 31.9 6.5 52 11-80 175-226 (323)
329 PF08006 DUF1700: Protein of u 21.3 1.2E+02 0.0025 30.3 3.9 34 61-99 5-38 (181)
330 PF10186 Atg14: UV radiation r 21.2 3.5E+02 0.0076 28.1 7.6 22 16-37 25-46 (302)
331 PRK09841 cryptic autophosphory 21.1 8E+02 0.017 30.0 11.5 37 5-41 261-297 (726)
332 KOG0639 Transducin-like enhanc 21.1 96 0.0021 37.0 3.7 32 10-41 22-53 (705)
333 KOG1029 Endocytic adaptor prot 21.0 3E+02 0.0066 34.6 7.8 35 5-39 536-570 (1118)
334 KOG3048 Molecular chaperone Pr 20.9 88 0.0019 31.8 2.9 29 6-34 96-124 (153)
335 PF12932 Sec16: Vesicle coat t 20.9 81 0.0018 29.7 2.6 22 7-28 68-89 (118)
336 PF12631 GTPase_Cys_C: Catalyt 20.8 1.3E+02 0.0029 26.1 3.8 53 57-115 12-69 (73)
337 COG3352 FlaC Putative archaeal 20.8 3.7E+02 0.0079 27.7 7.2 45 48-92 73-122 (157)
338 PRK14064 exodeoxyribonuclease 20.8 1.6E+02 0.0035 26.4 4.3 35 59-93 8-43 (75)
339 KOG3091 Nuclear pore complex, 20.8 6.3E+02 0.014 30.3 10.0 31 43-73 458-488 (508)
340 PRK14070 exodeoxyribonuclease 20.8 1.3E+02 0.0029 26.8 3.7 28 64-91 2-30 (69)
341 smart00787 Spc7 Spc7 kinetocho 20.6 8.9E+02 0.019 27.0 10.8 43 49-93 241-283 (312)
342 cd00446 GrpE GrpE is the adeni 20.6 2.4E+02 0.0053 27.1 5.8 78 21-98 2-83 (137)
343 PF02994 Transposase_22: L1 tr 20.5 2.1E+02 0.0045 32.3 6.1 85 1-92 89-183 (370)
344 PF10337 DUF2422: Protein of u 20.5 6.2E+02 0.013 28.9 9.9 46 47-92 255-304 (459)
345 PF08687 ASD2: Apx/Shroom doma 20.5 2.8E+02 0.0061 30.5 6.8 31 6-36 88-118 (264)
346 PF10127 Nuc-transf: Predicted 20.5 2E+02 0.0043 30.0 5.6 56 27-85 184-243 (247)
347 COG1729 Uncharacterized protei 20.4 1.7E+02 0.0038 31.9 5.3 21 18-38 56-76 (262)
348 TIGR02350 prok_dnaK chaperone 20.4 5.1E+02 0.011 30.5 9.4 15 77-91 547-561 (595)
349 PRK13411 molecular chaperone D 20.4 8.3E+02 0.018 29.5 11.3 22 75-96 549-573 (653)
350 COG3109 ProQ Activator of osmo 20.3 81 0.0018 33.0 2.6 53 651-713 20-73 (208)
351 KOG2160 Armadillo/beta-catenin 20.3 1.1E+02 0.0023 34.7 3.8 57 48-104 64-123 (342)
352 PF14644 DUF4456: Domain of un 20.2 4.1E+02 0.0088 27.5 7.7 30 9-38 42-71 (208)
353 PF11559 ADIP: Afadin- and alp 20.1 3.2E+02 0.0068 26.5 6.5 25 13-37 54-78 (151)
354 cd00890 Prefoldin Prefoldin is 20.0 3.8E+02 0.0081 24.7 6.8 17 18-34 87-103 (129)
355 PF11221 Med21: Subunit 21 of 20.0 2.7E+02 0.0058 27.3 6.0 25 51-75 119-143 (144)
No 1
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=2e-68 Score=585.17 Aligned_cols=144 Identities=53% Similarity=0.978 Sum_probs=140.3
Q ss_pred CcccccchhhhhHHHhhcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCcceEEEeecCCCc
Q 004110 614 GMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNT 693 (773)
Q Consensus 614 ~~~~~~LNLnslE~ly~tFpsPwDsep~r~y~Pr~P~~tP~cYpq~p~P~L~np~lfeK~Ki~kf~~ETLFYIFY~~PgD 693 (773)
+++++...+-++|.++..++.|.|.+.++.|.|++|+.+|.+|++++++.++...+|+| |+.|||||||||++|+
T Consensus 431 ~~~e~i~~~~~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~~~~q~~~~~~ds~~~~~r-----l~~dTLFfiFY~~qgt 505 (575)
T KOG2150|consen 431 ITNEQIRFLYALEAACKLVPIPSDSEKPQGYLPKTPLPTPSYFPQTPPSLTDSTEITER-----LDPDTLFFIFYYQQGT 505 (575)
T ss_pred ccccccchHHHHHhhhccCCCCchhhcccCCCCCCCCCCCccCCCCCCcccchhhHHhh-----ccccceeeEEeeecch
Confidence 67999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHhhcccccccccceeeeccCCCcccCCcceeEEEEEeccccCccccccccccccccCeeeechhhhhh
Q 004110 694 YQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 770 (773)
Q Consensus 694 ~~Ql~AA~EL~~RgWRYHKk~k~Wf~R~~eP~v~T~~yErGsY~yFD~~~~~d~~~~~W~qr~K~eFtfeY~~LE~~ 770 (773)
++|++||+||++|+||||++|.+||+|+.||+.+|+.||+|+|+|||+. .||+|.|.+|+|+|.|||+.
T Consensus 506 ~eQylAaKeLkk~sWrfhkky~tWFqR~~EpK~itd~~E~G~y~yFD~~--------~W~qrkK~dFtfeY~yLE~~ 574 (575)
T KOG2150|consen 506 YEQYLAAKELKKRSWRFHKKYTTWFQRHEEPKNITDIYEQGDYRYFDYK--------DWSQRKKIDFTFEYQYLEDS 574 (575)
T ss_pred HHHHHHHHHHhhcceeEeecceeEeeeccCccchhhhhhcCceEEEehh--------HhhhhhccceeeehhhccCC
Confidence 9999999999999999999999999999999999999999999999995 89999999999999999985
No 2
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=4.2e-59 Score=492.09 Aligned_cols=122 Identities=44% Similarity=0.885 Sum_probs=116.0
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCcceEEEeecCCCcHHHHHHHHHHhhcccccccccce
Q 004110 637 DSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNT 716 (773)
Q Consensus 637 Dsep~r~y~Pr~P~~tP~cYpq~p~P~L~np~lfeK~Ki~kf~~ETLFYIFY~~PgD~~Ql~AA~EL~~RgWRYHKk~k~ 716 (773)
..+-.+.|+|+.|+.+|.+||+.|++.|+...+|.+ |+.||||||||+.+|+++||+||+||++|+|||||+|.+
T Consensus 425 ~~D~~KkY~P~~P~~~Ps~~P~~PL~~F~S~~if~k-----~D~DTLFfiFY~~~GTyQQY~Aa~eLKk~SWRFHkKY~T 499 (548)
T COG5665 425 ENDTDKKYKPGKPSKAPSKKPDDPLSRFSSARIFMK-----FDLDTLFFIFYHYQGTYQQYLAARELKKRSWRFHKKYRT 499 (548)
T ss_pred cchhhhccCCCCCCCCCCCCCCCccccccHHHHHHh-----cCccceEEEeeeccchHHHHHHHHHHHhhhhhhhcchhh
Confidence 333445899999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred eeeccCCCcccCCcceeEEEEEeccccCccccccccccccccCeeeechhhhhh
Q 004110 717 WFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 770 (773)
Q Consensus 717 Wf~R~~eP~v~T~~yErGsY~yFD~~~~~d~~~~~W~qr~K~eFtfeY~~LE~~ 770 (773)
||+|+.||+.+|.+||+|+|.|||+. ..|..|.|.+|+|.|.|||+.
T Consensus 500 WFQR~~EPK~IT~~~E~Gs~ryFDy~-------~~W~~rKK~DF~F~Y~YLE~~ 546 (548)
T COG5665 500 WFQREIEPKPITGKSEEGSWRYFDYK-------KSWLARKKNDFVFNYEYLEKL 546 (548)
T ss_pred hhhhhcccccccCccccCceeEeecc-------chHHHhhcccceeehhhhhhc
Confidence 99999999999999999999999998 699999999999999999973
No 3
>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=4.6e-38 Score=295.29 Aligned_cols=128 Identities=45% Similarity=0.910 Sum_probs=114.2
Q ss_pred HhhcCCCCCCCCcc----CCCC-CCCCCCCCCCCCCCCCCC-CCChhHHhhhccCCCCCcceEEEeecCCCcHHHHHHHH
Q 004110 628 AFYKLPQPKDSERA----RSYI-PRHPAVTPPSYPQVQAPI-VSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAK 701 (773)
Q Consensus 628 ly~tFpsPwDsep~----r~y~-Pr~P~~tP~cYpq~p~P~-L~np~lfeK~Ki~kf~~ETLFYIFY~~PgD~~Ql~AA~ 701 (773)
||.+|.+||++.++ ..|. |+.+..+|.|||+.+++. ++++.+|+| |++||||||||+||||++|++||+
T Consensus 1 L~~sf~sp~~~~~~~~~~~~y~~P~~~~~~~~~~p~~p~~~~~~~~~~~~k-----~~~eTLFyiFY~~p~~~~Q~~AA~ 75 (134)
T PF04153_consen 1 LYSSFASPPSDSDSRQQEPQYQIPSCYLPTPSSYPQRPPPIILDSPEKFQK-----FSEETLFYIFYYMPGDYQQLLAAK 75 (134)
T ss_pred CccccCCCCCCCCCCCCCCCCCCCCCcCcCccccCCCcCcccccchHHHhh-----cCCceEEEEEeecCCcHHHHHHHH
Confidence 57889999988755 3443 666666778888887776 677878887 999999999999999999999999
Q ss_pred HHhhcccccccccceeeeccCCCcccCCcceeEEEEEeccccCccccccccccccccCeeeechhhh
Q 004110 702 ELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLE 768 (773)
Q Consensus 702 EL~~RgWRYHKk~k~Wf~R~~eP~v~T~~yErGsY~yFD~~~~~d~~~~~W~qr~K~eFtfeY~~LE 768 (773)
||++|||||||++++||+|+++++++++.+|+|+|+|||++ +||+++|.||+|+|++||
T Consensus 76 eL~~R~Wryhk~~~~W~~r~~~~~~~~~~~e~g~y~~FD~~--------~W~~~~k~~f~~~y~~LE 134 (134)
T PF04153_consen 76 ELYKRGWRYHKEYKTWFQRDSEPKPITEQYERGSYVYFDPE--------SWEKRRKKNFTFDYSDLE 134 (134)
T ss_pred HHHHCCcEEecCcCEEeeECCCCCccccceeeeeEEEechH--------HhcCcchhccEEeHHHcC
Confidence 99999999999999999999999999999999999999996 799989999999999998
No 4
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=8e-34 Score=288.56 Aligned_cols=116 Identities=54% Similarity=0.855 Sum_probs=106.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCC-----CCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004110 2 KDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGK-----TRPPRLTHLETSITRHKAHIMKLELILRLLDND 76 (773)
Q Consensus 2 lDP~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgK-----k~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd 76 (773)
+||+|++|.|+++||+++|++|++|||.||+|+|+|+.+++| +..+|+++|+.+|+||+|||.|||+|||+|+|+
T Consensus 113 ~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~ 192 (233)
T PF04065_consen 113 LDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDND 192 (233)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 699999999999999999999999999999999999973332 246799999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhCCCCccccccccccccCCCCCcc
Q 004110 77 ELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKV 119 (773)
Q Consensus 77 ~LdPe~V~dIKDDIeyYVEsNQdDF~Ef~dde~iYD~L~Ld~~ 119 (773)
.|+|++|++|||||+||||+|+| ++|++||+|||+|||+++
T Consensus 193 ~l~~e~V~~ikedieyYve~n~d--~Df~ede~iYddl~Ldee 233 (233)
T PF04065_consen 193 ELDPEQVEDIKEDIEYYVESNQD--PDFEEDEDIYDDLNLDEE 233 (233)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCC--CcccchHhHhhccCCCCC
Confidence 99999999999999999999999 455568999999999874
No 5
>COG5601 CDC36 General negative regulator of transcription subunit [Transcription]
Probab=99.97 E-value=1.6e-33 Score=268.05 Aligned_cols=159 Identities=24% Similarity=0.479 Sum_probs=133.0
Q ss_pred ccccccccCCCCc--cccCCCCCcccccCCcccccchh----hhhHHHhhcCCCCCCCCccCCCCCCCCCCCCCCCCCCC
Q 004110 587 LGVIGRRSVSDLG--AIGDSLSGATVSSGGMHDQMYNM----QMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQ 660 (773)
Q Consensus 587 LGvi~rms~pDl~--AiG~DLT~~~~tLG~~~~~~LNL----nslE~ly~tFpsPwDsep~r~y~Pr~P~~tP~cYpq~p 660 (773)
+-++ +|.|..+. .||-||. ++| ++| ...+....+|-+||+...-++..| -+.+|.||+..|
T Consensus 6 ~pl~-~ied~e~s~~~lg~Dl~----s~~------~sl~~p~~~qDr~~~t~~sPwae~tkk~vqp--~f~lP~cy~n~p 72 (172)
T COG5601 6 KPLE-QIEDEEQSIHDLGKDLL----SEI------LSLVRPKKYQDRPSTTLYSPWAESTKKPVQP--MFMLPNCYPNAP 72 (172)
T ss_pred hhHH-HHHHhhhhHHHhchhHH----HHH------HhhcCcccccccccccccChhhhhccCcccc--hhcCccccCCCC
Confidence 3344 77787777 7899999 666 555 344567778999999984444332 267999999988
Q ss_pred CCCCCChhHHhhhccCCCCCcceEEEeecCCCcHHHHHHHHHHhhcccccccccceeeeccC--CCcccCCcceeEEEEE
Q 004110 661 APIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVY 738 (773)
Q Consensus 661 ~P~L~np~lfeK~Ki~kf~~ETLFYIFY~~PgD~~Ql~AA~EL~~RgWRYHKk~k~Wf~R~~--eP~v~T~~yErGsY~y 738 (773)
.|+.-+.. .+.+||+.|++||||||||.||+|++|..|+.||.+|+|||||.+++|++.+. +|.+.++..|||+|++
T Consensus 73 ~pp~f~~~-~~~~k~~~f~dETLFyiFY~~P~dvlQe~ay~el~krnwrfhK~lk~wlT~~p~m~P~~~~~~~ergsyvf 151 (172)
T COG5601 73 NPPIFKVN-IEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWLTFNPGMSPATADHVKERGSYVF 151 (172)
T ss_pred CCCceecc-hHHHHHHhhccceeEEEEeeCCcHHHHHHHHHHHHHhchhhhhhheeeeccCCCCCccccccccccceEEE
Confidence 76544444 56689999999999999999999999999999999999999999999999984 7888889999999999
Q ss_pred eccccCccccccccccccccCeeeechhhh
Q 004110 739 FDFHIANDDLQHGWCQRIKTEFTFEYNYLE 768 (773)
Q Consensus 739 FD~~~~~d~~~~~W~qr~K~eFtfeY~~LE 768 (773)
|||. .|. |++.+|.|+|+.++
T Consensus 152 FDP~--------~W~-k~~~dfll~y~av~ 172 (172)
T COG5601 152 FDPF--------SWS-KVSLDFLLDYKAVR 172 (172)
T ss_pred Ecch--------hHH-HHhHHHHHHHHhhC
Confidence 9996 895 99999999999875
No 6
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.47 E-value=1.6e-14 Score=152.48 Aligned_cols=105 Identities=24% Similarity=0.348 Sum_probs=85.6
Q ss_pred CCCccccc--cccCCC--Cc-cccCCCCCcccccCCcccccchhhhhHHHhhcCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 004110 584 SGGLGVIG--RRSVSD--LG-AIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQ 658 (773)
Q Consensus 584 ~GlLGvi~--rms~pD--l~-AiG~DLT~~~~tLG~~~~~~LNLnslE~ly~tFpsPwDsep~r~y~Pr~P~~tP~cYpq 658 (773)
+|+.|++. |+.+.| .. .+|.||+ ++| |+|+..+.++.+|-+||...|++. . -.+.+|.||+.
T Consensus 203 fgm~gLL~~ir~~~~~g~~~l~lg~Dl~----~ll------lsla~~~di~~~F~~P~~~~P~~~-~--~~~~lp~~y~~ 269 (312)
T KOG2151|consen 203 FGMKGLLTLIRGAQGEGQTTLPLGADLN----SLL------LSLAVPEDIIPTFQGPWGEVPTSQ-E--ASFNLPNCYLN 269 (312)
T ss_pred hhhhcchhhheecccCcceeeccCCChh----hhh------ccccccccccccccCCcccCCccc-c--hhhhcchhhhc
Confidence 45555554 666665 22 8999999 999 999999999999999999999983 1 23779999998
Q ss_pred CCCCCCCChhHHhhhccCCCCCcceEEEeecCCCcHHHHHHHHHHhhccc
Q 004110 659 VQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 708 (773)
Q Consensus 659 ~p~P~L~np~lfeK~Ki~kf~~ETLFYIFY~~PgD~~Ql~AA~EL~~RgW 708 (773)
.+++ +.. .++..|++||||||||.+++|.+|..||.||.+|+|
T Consensus 270 v~~~-~~~------~~~~~~~dE~lff~fyt~~~d~~Q~~aa~el~~r~w 312 (312)
T KOG2151|consen 270 VNPK-LQF------SKIDQFQDETLFYIFYTFPGDVMQELAAAELLKRNW 312 (312)
T ss_pred cCCc-cch------HHHhhhcccceeeeeccCCcchhhhhHHHHhhccCC
Confidence 4433 221 236669999999999999999999999999999999
No 7
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.23 E-value=6e-12 Score=133.30 Aligned_cols=133 Identities=29% Similarity=0.571 Sum_probs=107.4
Q ss_pred cccCCCCCcccccCCcccccchhhhhH-HHhhcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhHHhh---hcc
Q 004110 600 AIGDSLSGATVSSGGMHDQMYNMQMLE-SAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER---LSL 675 (773)
Q Consensus 600 AiG~DLT~~~~tLG~~~~~~LNLnslE-~ly~tFpsPwDsep~r~y~Pr~P~~tP~cYpq~p~P~L~np~lfeK---~Ki 675 (773)
++|.||+ +|| +|+|.-+ .+|.+|..||++++.+.- ....+|.||...+. ++.+ ..+
T Consensus 37 ~~~~d~~----~lg------~~~n~~~~~~~~~f~g~~~s~~l~~l---~~~~~P~~~~~~~~-------~~~~~~~~~~ 96 (312)
T KOG2151|consen 37 ALGYDLT----TLG------LNLNLSERKLLMNFAGPWASEPLRHL---LDTKVPEEYMTHRH-------LRSKLPSLRL 96 (312)
T ss_pred eeccchh----ccC------cccccccccccccccCcCCCcccccc---ccccCccccccchh-------hhhcCCcccc
Confidence 8899999 999 5554333 688889999999998842 34568999984322 2222 225
Q ss_pred CCCCCcceEEEeecCCCcHHHHHHHHHHhhcccccccccceeeeccC--CCcccCCcceeEEEEEeccccCccccccccc
Q 004110 676 DSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWC 753 (773)
Q Consensus 676 ~kf~~ETLFYIFY~~PgD~~Ql~AA~EL~~RgWRYHKk~k~Wf~R~~--eP~v~T~~yErGsY~yFD~~~~~d~~~~~W~ 753 (773)
+++....|||+||++| |.||..|.||||++.+.|+.+.. .+...++.++.|.|..||.. .|+
T Consensus 97 ~kv~~~~l~~~~~~~P--------a~e~~~r~~~~~~~~~~~l~~s~yg~~~~~~~~~~~g~~~~~~q~--------s~~ 160 (312)
T KOG2151|consen 97 NKVGERVLFYLFYNLP--------AGELQAREWRFHKSEQVWLTRSQYGGVKELPGNYMKGHFNVFDQM--------SWR 160 (312)
T ss_pred cccccccceeeeccCC--------CcccccccccccccccccccccccCCccccccchhhchhccccch--------hhh
Confidence 6699999999999999 99999999999999999999974 56667789999999999995 786
Q ss_pred cccccCeeeechhhhh
Q 004110 754 QRIKTEFTFEYNYLED 769 (773)
Q Consensus 754 qr~K~eFtfeY~~LE~ 769 (773)
++-.+--++|..+|+
T Consensus 161 -~~~ke~~l~~~~~~~ 175 (312)
T KOG2151|consen 161 -KIPKELKLAYSDLED 175 (312)
T ss_pred -hcccchhhccccccc
Confidence 677788888888886
No 8
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=95.89 E-value=0.032 Score=53.18 Aligned_cols=89 Identities=24% Similarity=0.384 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc------ccCCCCCh-----hhHHHHHHHHHHHHHHHHHHHHHHhhh-----
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTV------KKGKTRPP-----RLTHLETSITRHKAHIMKLELILRLLD----- 74 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~------KKgKk~~~-----r~e~Le~~IeRhk~HI~KLE~iLRlLd----- 74 (773)
|++-=|+..++.|+++++.||.+++++-. |||++..+ ++..++..+++......+||.++--|+
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666888999999999999999988753 34443322 344455555555555555554433222
Q ss_pred -----------------CCCCChhhHHHHHHHHHHHHHhCCC
Q 004110 75 -----------------NDELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 75 -----------------Nd~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
|..|++++|+++.|||+.-++..++
T Consensus 81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~e 122 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDE 122 (171)
T ss_dssp HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999765
No 9
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=0.087 Score=59.44 Aligned_cols=87 Identities=29% Similarity=0.383 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc------cccCCCCCh-----hhHHHHHHHHHHHHHHHHHHHHHHhhhCC-----
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGLT------VKKGKTRPP-----RLTHLETSITRHKAHIMKLELILRLLDND----- 76 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkLs------~KKgKk~~~-----r~e~Le~~IeRhk~HI~KLE~iLRlLdNd----- 76 (773)
.--|...+..|.+|+|.|+.|+|+.. .|+|+|.-+ ++.-+++.++|----..+||.||-.++|-
T Consensus 235 V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkv 314 (439)
T KOG2911|consen 235 VADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKV 314 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHH
Confidence 44577889999999999999999864 377776522 34446667777777788899888777653
Q ss_pred ------------------CCChhhHHHHHHHHHHHHHhCCC
Q 004110 77 ------------------ELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 77 ------------------~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
.+.+|.|+++-|||+.-+++..|
T Consensus 315 vl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~E 355 (439)
T KOG2911|consen 315 VLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEE 355 (439)
T ss_pred HHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHH
Confidence 46788888888888777766544
No 10
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=92.96 E-value=0.43 Score=49.00 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=21.4
Q ss_pred CCCCChhhHHHHHHHHHHHHHhCCC
Q 004110 75 NDELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 75 Nd~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
|..|+.++|++|.|||+..++-..|
T Consensus 124 ~k~~~idkVd~lmDei~E~~e~~~E 148 (191)
T PTZ00446 124 NNEINTQKVEKIIDTIQENKDIQEE 148 (191)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999987655
No 11
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=92.17 E-value=1.4 Score=44.92 Aligned_cols=82 Identities=26% Similarity=0.357 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCC-h---hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhh
Q 004110 7 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRP-P---RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQ 82 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~-~---r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~ 82 (773)
+.+...++=|+.-|++++..++.++.+++.+ |++|... + .+++++.+-++++--...|+ .-...||+.
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~--~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~------~~~~~Dp~~ 136 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEA--KKGREESEEREELLEELEELKKELKELKKELE------KYSENDPEK 136 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccccHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcCHHH
Confidence 3455566666666666666666666666665 4455443 2 34444444444443333333 122358999
Q ss_pred HHHHHHHHHHHHHh
Q 004110 83 VNDVKDLLEDYVER 96 (773)
Q Consensus 83 V~dIKDDIeyYVEs 96 (773)
|+.+++++..+.+.
T Consensus 137 i~~~~~~~~~~~~~ 150 (188)
T PF03962_consen 137 IEKLKEEIKIAKEA 150 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888776
No 12
>PTZ00464 SNF-7-like protein; Provisional
Probab=91.90 E-value=0.72 Score=47.93 Aligned_cols=89 Identities=15% Similarity=0.284 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc--cccCCC------C-Ch-----hhHHHHHHHHHHHHHHHHHHHHH-----
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLT--VKKGKT------R-PP-----RLTHLETSITRHKAHIMKLELIL----- 70 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs--~KKgKk------~-~~-----r~e~Le~~IeRhk~HI~KLE~iL----- 70 (773)
.|+..=|.+-++.|.++++.++.|+++.- .|++|. + .+ |+.-++..+++-.-++.+||.++
T Consensus 17 ~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~ 96 (211)
T PTZ00464 17 EDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTES 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788888888888888888877653 122221 0 00 22223333333333333333332
Q ss_pred ------------------HhhhCCCCChhhHHHHHHHHHHHHHhCCC
Q 004110 71 ------------------RLLDNDELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 71 ------------------RlLdNd~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
+.+ |..|+.++|++|.|||+..++...|
T Consensus 97 a~~~~~vv~amk~g~kaLK~~-~k~i~id~Vd~l~Dei~E~~e~~~E 142 (211)
T PTZ00464 97 VKDTKVQVDAMKQAAKTLKKQ-FKKLNVDKVEDLQDELADLYEDTQE 142 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 222 4568999999999999999987654
No 13
>PHA00425 DNA packaging protein, small subunit
Probab=90.74 E-value=0.54 Score=42.81 Aligned_cols=67 Identities=22% Similarity=0.332 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhhhccccCC---CC-ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCC
Q 004110 23 LESQIDSFEAELEGLTVKKGK---TR-PPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQ 98 (773)
Q Consensus 23 L~~QiE~lEaEiEkLs~KKgK---k~-~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQ 98 (773)
|.+=+|.++.|+-++-..-.| |+ +.--..|..+++||||||.||- .|..-+-++-+-++.|=+--.
T Consensus 6 L~k~LemlDTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RHkF~isKl~----------pD~~iLg~la~~l~ey~~~~g 75 (88)
T PHA00425 6 LIKFLEMLDTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRHKFQISKLQ----------PDENILGGLAAALEEYKEKVG 75 (88)
T ss_pred HHHHHHHHhHHHHHHHHHHhcCccccChHHHHHHHHHHHHhcccccccC----------CcHHHHHHHHHHHHHHHHhcC
Confidence 555567778887665432222 22 3345778899999999999985 233344567788888887666
Q ss_pred C
Q 004110 99 D 99 (773)
Q Consensus 99 d 99 (773)
.
T Consensus 76 ~ 76 (88)
T PHA00425 76 A 76 (88)
T ss_pred C
Confidence 5
No 14
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=89.82 E-value=0.84 Score=41.24 Aligned_cols=67 Identities=21% Similarity=0.348 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhhccccCC---CC-ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCC
Q 004110 23 LESQIDSFEAELEGLTVKKGK---TR-PPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQ 98 (773)
Q Consensus 23 L~~QiE~lEaEiEkLs~KKgK---k~-~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQ 98 (773)
|+.=+|.+..|+-..-.+-.| |+ +.=-..+..+++||||||.||- .|.+.+-++.+-++.|=+--.
T Consensus 4 L~klLemlDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF~iskl~----------pd~~~LG~L~~aL~ey~~~~g 73 (82)
T PF11123_consen 4 LEKLLEMLDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKFQISKLQ----------PDENILGELAAALEEYKKMVG 73 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccchhhhcC----------ccHHHHHHHHHHHHHHHHHcC
Confidence 445566677776554332222 22 3345678889999999999984 445556688999999988766
Q ss_pred C
Q 004110 99 D 99 (773)
Q Consensus 99 d 99 (773)
+
T Consensus 74 ~ 74 (82)
T PF11123_consen 74 A 74 (82)
T ss_pred C
Confidence 5
No 15
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=89.20 E-value=2 Score=43.78 Aligned_cols=79 Identities=29% Similarity=0.427 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCC--ChhhHHHHHHHHHHHHHHHHHHHHH-Hhhh---CCCCChhh---HH
Q 004110 14 DWLNNLVSELESQIDSFEAELEGLTVKKGKTR--PPRLTHLETSITRHKAHIMKLELIL-RLLD---NDELSPEQ---VN 84 (773)
Q Consensus 14 dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~--~~r~e~Le~~IeRhk~HI~KLE~iL-RlLd---Nd~LdPe~---V~ 84 (773)
+.....+++|+++++.+|.++ .+..++ -.++-+++..+-+.+..+..+..++ +++. ...++.+. +.
T Consensus 121 ~~~~~~l~~l~~~l~~le~~~-----~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 195 (292)
T PF01544_consen 121 DDYFEVLEELEDELDELEDEL-----DDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLR 195 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----THTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc-----ccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 334444455555555555554 222222 3478889999999999999998888 9998 44455555 77
Q ss_pred HHHHHHHHHHHhC
Q 004110 85 DVKDLLEDYVERN 97 (773)
Q Consensus 85 dIKDDIeyYVEsN 97 (773)
++.++++...+.-
T Consensus 196 ~~~~~~~~~~~~~ 208 (292)
T PF01544_consen 196 DLLDRIERLLERA 208 (292)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877664
No 16
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.58 E-value=6.8 Score=38.59 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhhhhccccC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CChhhHHHHHHHHHHHHH
Q 004110 20 VSELESQIDSFEAELEGLTVKKG-KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE--LSPEQVNDVKDLLEDYVE 95 (773)
Q Consensus 20 IdeL~~QiE~lEaEiEkLs~KKg-Kk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~--LdPe~V~dIKDDIeyYVE 95 (773)
|.+|+.|+..++.++-.|...-. =......++|...|+..+--+..||.-|..|..+. ++++++..|+...+.|..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k 159 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRK 159 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 66666666666666555543111 12244567778888888888888888888777644 789999999999988875
No 17
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.72 E-value=1.7 Score=45.50 Aligned_cols=106 Identities=21% Similarity=0.301 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh-c--ccc-CCCC--------------ChhhHHHHHHHHHHHHHHHHHHH---
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGL-T--VKK-GKTR--------------PPRLTHLETSITRHKAHIMKLEL--- 68 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkL-s--~KK-gKk~--------------~~r~e~Le~~IeRhk~HI~KLE~--- 68 (773)
.|++.-|+++++-|.+.-|-||..|+.- . .|| +.|+ +..+.++...+.+-.+...-||.
T Consensus 20 ~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~ 99 (221)
T KOG1656|consen 20 QEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANT 99 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccc
Confidence 4788888888888888888777766543 1 122 2221 12233344444444444333332
Q ss_pred ---HHHhhhC---------CCCChhhHHHHHHHHHHHHHhCCC--C-------ccccccccccccCCC
Q 004110 69 ---ILRLLDN---------DELSPEQVNDVKDLLEDYVERNQD--D-------FEEFSDVDELYHLLP 115 (773)
Q Consensus 69 ---iLRlLdN---------d~LdPe~V~dIKDDIeyYVEsNQd--D-------F~Ef~dde~iYD~L~ 115 (773)
+||-|.. ..+|-++|+++-|+|..-.|.-++ | |-+-.|+|+|-.+|+
T Consensus 100 n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELd 167 (221)
T KOG1656|consen 100 NTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELD 167 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHH
Confidence 1222211 346788899999999888876543 2 311244577777664
No 18
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.76 E-value=5 Score=42.00 Aligned_cols=24 Identities=17% Similarity=0.558 Sum_probs=20.8
Q ss_pred CCCChhhHHHHHHHHHHHHHhCCC
Q 004110 76 DELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 76 d~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
..|.-++|++|+|++++|+|.+.|
T Consensus 121 kkvnId~IedlQDem~Dlmd~a~E 144 (218)
T KOG1655|consen 121 KKVNIDKIEDLQDEMEDLMDQADE 144 (218)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 347789999999999999998755
No 19
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=78.08 E-value=25 Score=29.06 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 2 KDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV-KKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 73 (773)
Q Consensus 2 lDP~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~-KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlL 73 (773)
.||.+. .++..-|....++|+.+++.++..++.|.. =+|.-...=.+..+.+....+-.+..|+.+.+.|
T Consensus 4 vd~~~l--~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l 74 (86)
T PF06013_consen 4 VDPEQL--RAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELSQAL 74 (86)
T ss_dssp SCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666 677888999999999999999999999964 3466554444455555555555555665554444
No 20
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=76.11 E-value=17 Score=31.37 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 004110 7 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 71 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLR 71 (773)
.+|...+.=+...|+|.+.-++.+|.|+-.+. ......++..|..||-.+.+|+.-||
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p-------~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLP-------PSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36788888899999999999999999986553 24567888889999998888887665
No 21
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=76.09 E-value=14 Score=38.62 Aligned_cols=88 Identities=20% Similarity=0.241 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccC-----CCC-----ChhhHHHHHHHH-----HHHHHHHHHHHHHHhhhC
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTVKKG-----KTR-----PPRLTHLETSIT-----RHKAHIMKLELILRLLDN 75 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKg-----Kk~-----~~r~e~Le~~Ie-----Rhk~HI~KLE~iLRlLdN 75 (773)
.-.++|+..+++|+++++..+.|+++|..+.. +.. ...++.|+.+++ .......+|+.+-.+|++
T Consensus 63 ~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~ 142 (251)
T PF11932_consen 63 REIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDD 142 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhc
Confidence 34566667777777777777777777654221 111 125677777777 445567789999999999
Q ss_pred CCCC-hhhHHHHHHHHHHHHHhCC
Q 004110 76 DELS-PEQVNDVKDLLEDYVERNQ 98 (773)
Q Consensus 76 d~Ld-Pe~V~dIKDDIeyYVEsNQ 98 (773)
-.|+ .+++..|-+-+.--++-+.
T Consensus 143 ~dv~~~ek~r~vlea~~~E~~yg~ 166 (251)
T PF11932_consen 143 ADVSLAEKFRRVLEAYQIEMEYGR 166 (251)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCC
Confidence 9987 5666666554443333333
No 22
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=75.88 E-value=10 Score=37.01 Aligned_cols=64 Identities=28% Similarity=0.433 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHH
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 90 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDI 90 (773)
+..+|.-.-|.+|+++++.++++++ +++....+++.-++..|+ +.|+.+...|
T Consensus 3 ~~a~~al~ki~~l~~~~~~i~~~~~--------------~~I~~i~~~~~~~~~~l~-------------~~i~~l~~~l 55 (149)
T PF07352_consen 3 EEADWALRKIAELQREIARIEAEAN--------------DEIARIKEWYEAEIAPLQ-------------NRIEYLEGLL 55 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHCHHHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Confidence 4567888889999999999999974 355666677777777777 7888999999
Q ss_pred HHHHHhCCC-Cc
Q 004110 91 EDYVERNQD-DF 101 (773)
Q Consensus 91 eyYVEsNQd-DF 101 (773)
..|.+.|-+ +|
T Consensus 56 ~~y~e~~r~e~~ 67 (149)
T PF07352_consen 56 QAYAEANRDELT 67 (149)
T ss_dssp HHHHHCTHHHH-
T ss_pred HHHHHHCHHhcc
Confidence 999999987 54
No 23
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.28 E-value=1.8e+02 Score=34.28 Aligned_cols=8 Identities=25% Similarity=-0.247 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 004110 89 LLEDYVER 96 (773)
Q Consensus 89 DIeyYVEs 96 (773)
.+.||=|-
T Consensus 206 q~vf~~Em 213 (460)
T KOG3771|consen 206 QLVFHKEM 213 (460)
T ss_pred HHHHHHHH
Confidence 33344333
No 24
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=73.90 E-value=1.4e+02 Score=36.43 Aligned_cols=97 Identities=27% Similarity=0.299 Sum_probs=58.3
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhcc-ccCCCCChhhHHHHHHHHHHHHHHHH-HHHHHHhhhCCCC-C
Q 004110 6 EKAKSETRDWL---NNLVSELESQIDSFEAELEGLTV-KKGKTRPPRLTHLETSITRHKAHIMK-LELILRLLDNDEL-S 79 (773)
Q Consensus 6 EkeK~Ea~dwL---~~~IdeL~~QiE~lEaEiEkLs~-KKgKk~~~r~e~Le~~IeRhk~HI~K-LE~iLRlLdNd~L-d 79 (773)
|||+.|..+=+ .+.|++++ |+.--|.+-|.|.- +|+|.....+..|++..+--+.-+.+ ++.+.+-|.-|.. -
T Consensus 194 Ekeq~e~E~K~R~se~l~qevn-~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~ 272 (861)
T KOG1899|consen 194 EKEQNETEKKLRLSENLMQEVN-QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHK 272 (861)
T ss_pred HHHhhhHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccch
Confidence 45555554444 34566665 44444444555653 67776555666666655544444433 4555555544443 3
Q ss_pred hhhHHHHHHHHHHHHHhCCC--Cccc
Q 004110 80 PEQVNDVKDLLEDYVERNQD--DFEE 103 (773)
Q Consensus 80 Pe~V~dIKDDIeyYVEsNQd--DF~E 103 (773)
.+.++.+|-.+|--+-.|.+ ||+|
T Consensus 273 ~~rd~~lk~a~eslm~ane~kdr~ie 298 (861)
T KOG1899|consen 273 SLRDNTLKNALESLMRANEQKDRFIE 298 (861)
T ss_pred hhHHHHHHHHHHHHHhhchhhhhHHH
Confidence 67888999999999999976 5543
No 25
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=73.82 E-value=4.2 Score=45.17 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CChhhHHHHHHHHHHHHHh
Q 004110 49 LTHLETSITRHKAHIMKLELILRLLDNDE--LSPEQVNDVKDLLEDYVER 96 (773)
Q Consensus 49 ~e~Le~~IeRhk~HI~KLE~iLRlLdNd~--LdPe~V~dIKDDIeyYVEs 96 (773)
.+++...|.|++.+++.|..-|+-++... .+.+.|+++++||+..-..
T Consensus 34 Q~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~ 83 (330)
T PF07851_consen 34 QDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQ 83 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhh
Confidence 44566689999999999999999987642 4588888999988775444
No 26
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=72.58 E-value=7 Score=37.63 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhH
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQV 83 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld-Pe~V 83 (773)
.|...=|.-.+...-.|.+++..++|.|.+-.-| .++++++..+++|---|..+=.|+|-+|++-|| |..+
T Consensus 10 ~e~~~el~P~l~d~~~~~r~~~n~~e~L~~qedk---~~l~e~e~q~k~~l~~i~e~G~iird~d~glVDFpa~~ 81 (123)
T COG4911 10 PETARELLPWLRDRLIQLRKIKNEIELLLVQEDK---YALQEYESQTKKILDEIIEKGIIIRDIDIGLVDFPAII 81 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH---HHHHHHHHHHHHHHHHHHHcCceeeccccccccchhhh
Confidence 3333333333444445667778888887653333 378888888888777777777899999999998 5443
No 27
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=70.95 E-value=62 Score=36.91 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=21.9
Q ss_pred HHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCC
Q 004110 65 KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 65 KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
||=.+...|.+=.-|.+++.-|=|-|..|-|.+.+
T Consensus 73 KlleL~~~lQ~lS~df~~LqPLF~Ti~eyse~~~~ 107 (379)
T PF11593_consen 73 KLLELYNKLQELSSDFQKLQPLFDTIPEYSEKYNS 107 (379)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHhhhHHHhcccCC
Confidence 33333333444344567777788888888888766
No 28
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=70.29 E-value=11 Score=41.80 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHh----hhhcc---ccCCCCChhhHHHHHHHHH-HHHHHHHHHHHHHhhhCCCCC----hhhH
Q 004110 16 LNNLVSELESQIDSFEAEL----EGLTV---KKGKTRPPRLTHLETSITR-HKAHIMKLELILRLLDNDELS----PEQV 83 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEi----EkLs~---KKgKk~~~r~e~Le~~IeR-hk~HI~KLE~iLRlLdNd~Ld----Pe~V 83 (773)
|-.-|+.|+.+-|.|-..| |.|.. ||..+=...+.+|+..+++ +.||+.||-..|.-|.++... -+++
T Consensus 82 LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~L 161 (310)
T PF09755_consen 82 LLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERL 161 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3345777877777664333 33432 5543333345577777776 889999999999999876643 3566
Q ss_pred HHHHHHHHHHHHhCCC
Q 004110 84 NDVKDLLEDYVERNQD 99 (773)
Q Consensus 84 ~dIKDDIeyYVEsNQd 99 (773)
..-|=|++.-+|..|+
T Consensus 162 r~EKVdlEn~LE~EQE 177 (310)
T PF09755_consen 162 RREKVDLENTLEQEQE 177 (310)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 6778899999999887
No 29
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=70.23 E-value=2.6e+02 Score=33.99 Aligned_cols=63 Identities=11% Similarity=0.181 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCC----h-----hhHHHHHHHHHHHHHhCCCCccccccccccccCCCC
Q 004110 51 HLETSITRHKAHIMKLELILRLLDNDELS----P-----EQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPL 116 (773)
Q Consensus 51 ~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld----P-----e~V~dIKDDIeyYVEsNQdDF~Ef~dde~iYD~L~L 116 (773)
+++..-+.++-|+.+||.+-+-..++..+ . ..+.-+|.+|--|...-.+ -.+.++..||.+.+
T Consensus 147 ~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is~---~~~~~~q~~E~~k~ 218 (611)
T KOG2398|consen 147 KIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLSFLKEELWLFANQISE---SCVKIDQVMEEFKL 218 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccchhHHHHHHHH
Confidence 35556778899999999988887777644 2 2334477777777666444 23335777877654
No 30
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=69.80 E-value=12 Score=38.34 Aligned_cols=77 Identities=14% Similarity=0.252 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHH----HHHHHHHHHHHHHHHHHhhhC-CCCChhhHHH-
Q 004110 12 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLET----SITRHKAHIMKLELILRLLDN-DELSPEQVND- 85 (773)
Q Consensus 12 a~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~----~IeRhk~HI~KLE~iLRlLdN-d~LdPe~V~d- 85 (773)
-|.-+-.-+.+|+.+++.|+.|++++. +.+++++++++. ..+.-+..-.+++.|...|.+ -.++..+|+.
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~----~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~~~~~~~i~k~ 179 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYS----ENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKKFGMDEEDIRKE 179 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCHHHHHHH
Confidence 344455666777777777777776432 445555555544 333444455666777666666 3366666662
Q ss_pred --HHHHHHH
Q 004110 86 --VKDLLED 92 (773)
Q Consensus 86 --IKDDIey 92 (773)
|-+|++|
T Consensus 180 f~Ip~d~dy 188 (188)
T PF03962_consen 180 FGIPEDFDY 188 (188)
T ss_pred cCCccccCC
Confidence 4454443
No 31
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=66.13 E-value=12 Score=39.22 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhCCC
Q 004110 86 VKDLLEDYVERNQD 99 (773)
Q Consensus 86 IKDDIeyYVEsNQd 99 (773)
+..||..||+++..
T Consensus 236 ~~~Di~~fv~~~gt 249 (261)
T cd07648 236 VDKLLRQFVESKGT 249 (261)
T ss_pred HHHHHHHHHHcCCC
Confidence 56788888888764
No 32
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=65.59 E-value=21 Score=34.83 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhHHHHHHHHH
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLLE 91 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld-Pe~V~dIKDDIe 91 (773)
+.=|.+.+..+.+|+|.+-..+.+ -+.||...|++--.+++....+.+.++++-.+ -++|..|++||+
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~-----------tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~ 106 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSS-----------TKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVD 106 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 445777888888888887766532 23477777777777777777777777655433 344555555554
Q ss_pred H
Q 004110 92 D 92 (773)
Q Consensus 92 y 92 (773)
+
T Consensus 107 ~ 107 (126)
T PF07889_consen 107 S 107 (126)
T ss_pred H
Confidence 4
No 33
>PF14282 FlxA: FlxA-like protein
Probab=65.49 E-value=11 Score=35.21 Aligned_cols=56 Identities=18% Similarity=0.343 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 004110 17 NNLVSELESQIDSFEAELEGLTVKKG---KTRPPRLTHLETSITRHKAHIMKLELILRL 72 (773)
Q Consensus 17 ~~~IdeL~~QiE~lEaEiEkLs~KKg---Kk~~~r~e~Le~~IeRhk~HI~KLE~iLRl 72 (773)
...|..|++||..|+.+|.+|...+. +.+..+++.|+.-|.--.-.|..|..-..-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999998876433 222346667777777777777766644433
No 34
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=64.55 E-value=32 Score=31.67 Aligned_cols=39 Identities=23% Similarity=0.459 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhhCCCCChhhHHHHHHHH
Q 004110 52 LETSITRHKAHIM-KLELILRLLDNDELSPEQVNDVKDLL 90 (773)
Q Consensus 52 Le~~IeRhk~HI~-KLE~iLRlLdNd~LdPe~V~dIKDDI 90 (773)
++..+++-.-.+. -++.|-|+|+++.|.|+++++++--+
T Consensus 48 m~Ki~~kg~~yv~~E~~RL~~iL~~~~ls~~K~del~~R~ 87 (93)
T cd00238 48 MEKILEKGEDYVEKELARLERLLEKKGLAPEKADELTRRL 87 (93)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3444534444444 48999999999999999999976543
No 35
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=64.30 E-value=13 Score=34.32 Aligned_cols=33 Identities=36% Similarity=0.546 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
|+...||.+||.+-|+.|+.+++.++.+++++.
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~ 114 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQ 114 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999987653
No 36
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=63.40 E-value=31 Score=29.96 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHH
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYV 94 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYV 94 (773)
|+..++...+++.-+|..++ ++|++|++.+.+++
T Consensus 21 ~i~~lE~~~~~~e~~i~~~~-------------~~l~~I~~n~kW~~ 54 (71)
T PF10779_consen 21 RIDKLEKRDAANEKDIKNLN-------------KQLEKIKSNTKWIW 54 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 44455555555555555554 66677777666553
No 37
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.08 E-value=66 Score=35.22 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=37.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHH
Q 004110 46 PPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 95 (773)
Q Consensus 46 ~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVE 95 (773)
..++++++..+..++--|..+|.++. .+...+..+|..||+.++..=.
T Consensus 243 ~~~i~~~~~~k~~l~~eI~e~~~~~~--~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 243 EEKIEELEEQKQELLAEIAEAEKIRE--ECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHH
Confidence 34677777777788878888887766 5667899999999999986533
No 38
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=62.45 E-value=55 Score=27.49 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHH
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLED 92 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIey 92 (773)
+.+.++.-|..|+-++..|...-..|.+.. |.....|++.++.
T Consensus 42 ~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~--~~~~~~i~~~~~~ 84 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESLNEQAQQLIDSG--PEDSDEIQEKLEE 84 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HTTHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence 455777778888888888877777774444 5555556655554
No 39
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=60.43 E-value=31 Score=34.06 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHH
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVN 84 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~ 84 (773)
|.++.+......+-+..+|+.+..+|....|+++++-
T Consensus 40 r~ee~~~~~~~~~er~~kl~~~r~~m~~~Gis~~eL~ 76 (135)
T PRK10947 40 RREEESAAAAEVEERTRKLQQYREMLIADGIDPNELL 76 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHh
Confidence 3444455556666788899999999999999998883
No 40
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=60.31 E-value=54 Score=34.88 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004110 17 NNLVSELESQIDSFEAE 33 (773)
Q Consensus 17 ~~~IdeL~~QiE~lEaE 33 (773)
..+|.+++.+++.|..|
T Consensus 31 e~~L~e~~kE~~~L~~E 47 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQE 47 (230)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555555
No 41
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=58.78 E-value=34 Score=33.59 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCC
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR 45 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~ 45 (773)
|+-|.++..-|...|..|+.+++.||.+.-++....+|.+
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~ 54 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQN 54 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5667888888888888888888888888766654333443
No 42
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=58.73 E-value=34 Score=33.75 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhH
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQV 83 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V 83 (773)
|.++.+.......-+..+|+.|.++++...|+++++
T Consensus 40 r~~~~~~~~~~~~er~~~l~~i~~~~~~~Git~eeL 75 (134)
T PRK10328 40 RREEEEQQQRELAERQEKINTWLELMKADGINPEEL 75 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 444555556666778889999999999999999888
No 43
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=58.66 E-value=38 Score=32.76 Aligned_cols=78 Identities=18% Similarity=0.305 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCC----------CC---ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGLTVKKGK----------TR---PPRLTHLETSITRHKAHIMKLELILRLLDNDELS 79 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgK----------k~---~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld 79 (773)
.+.|+..|..|+.++-.+..++..|...|.. .. .....++..+-..++....|.+.+|-||=.-
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK--- 94 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEK--- 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---
Confidence 4455555665555555555555555432211 11 1123445555666777777788888887543
Q ss_pred hhhHHHHHHHHHHH
Q 004110 80 PEQVNDVKDLLEDY 93 (773)
Q Consensus 80 Pe~V~dIKDDIeyY 93 (773)
-++|+++|.||.+-
T Consensus 95 ~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 95 SEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 57888888888764
No 44
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=58.48 E-value=53 Score=33.20 Aligned_cols=25 Identities=12% Similarity=0.436 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
.+++.+.+++-+.+++.++..+.++
T Consensus 70 ~~~~~~~l~ea~~~i~~i~~~~~~i 94 (199)
T PF10112_consen 70 YEYIREILEEAKEKIRRIEKAIKRI 94 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4578888888888888888876654
No 45
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.26 E-value=82 Score=28.10 Aligned_cols=57 Identities=23% Similarity=0.190 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 004110 8 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 75 (773)
Q Consensus 8 eK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdN 75 (773)
...|++.-|+.-|++|+.++..+..+.+.|. ++.+.+...|+--..+|..+|..|++
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~-----------~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELK-----------EENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445555666666666666555555544442 23333444445555666666666653
No 46
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=58.04 E-value=24 Score=39.58 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhhhccc--cCCCCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 004110 19 LVSELESQIDSFEAELEGLTVK--KGKTRPPRLTHLETSITRHKAHIMKLELILRL 72 (773)
Q Consensus 19 ~IdeL~~QiE~lEaEiEkLs~K--KgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRl 72 (773)
.++.|+.+++.++.++++|..+ |.+|...++.+++..++++.-.|..++.++.-
T Consensus 243 ~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 243 YLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555544431 22233346777777777777777777766543
No 47
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.92 E-value=50 Score=38.27 Aligned_cols=70 Identities=26% Similarity=0.141 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHH
Q 004110 7 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDV 86 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dI 86 (773)
-++.|+..-+..-|.+|+.|++..+.|++++- ..+.+.+|-.-|++..|...+-++|... +.|...
T Consensus 302 ~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk------------~~e~~~kqL~~~~kek~~~~Qd~~~r~~--E~v~~~ 367 (446)
T KOG4438|consen 302 YDSLETKVVELKEILELEDQIELNQLELEKLK------------MFENLTKQLNELKKEKESRRQDLENRKT--ESVKAM 367 (446)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHH
Confidence 35666666677777777777777777766542 4567888888888888888888888776 444444
Q ss_pred HHHH
Q 004110 87 KDLL 90 (773)
Q Consensus 87 KDDI 90 (773)
.|++
T Consensus 368 md~~ 371 (446)
T KOG4438|consen 368 MDDN 371 (446)
T ss_pred HHHH
Confidence 4443
No 48
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=57.84 E-value=38 Score=40.53 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHH
Q 004110 8 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVK 87 (773)
Q Consensus 8 eK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIK 87 (773)
++..-.+=|++.|++|..+++.++.+++.|..+-++ -..++++.+...++..--..-.+.++.||.+.+-.-++++.+-
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q-~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQ-LEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 445556678888888999999999888887642111 1223333444444444444444555555555443334444433
Q ss_pred HH
Q 004110 88 DL 89 (773)
Q Consensus 88 DD 89 (773)
|.
T Consensus 404 ~~ 405 (594)
T PF05667_consen 404 EA 405 (594)
T ss_pred HH
Confidence 33
No 49
>PLN03188 kinesin-12 family protein; Provisional
Probab=57.48 E-value=22 Score=45.73 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHH
Q 004110 5 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLET 54 (773)
Q Consensus 5 ~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~ 54 (773)
+|++..+.|.=--.-|.+|++.+.++.+|.|.-+. -+.+++.+|..|+.
T Consensus 878 re~~le~~c~~qa~~i~ql~~lv~qyk~e~~~~~~-~~~~~~~ki~~l~~ 926 (1320)
T PLN03188 878 REMALEEFCTKQASEITQLNRLVQQYKHERECNAI-IGQTREDKIIRLES 926 (1320)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhHH-HhhhhhhhHHHHhh
Confidence 46777888888888899999999999999887542 12244444433333
No 50
>PRK04654 sec-independent translocase; Provisional
Probab=57.20 E-value=2.7e+02 Score=29.81 Aligned_cols=49 Identities=22% Similarity=0.216 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLE 67 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE 67 (773)
=++..+|-..|.++++.+..+..|++.- .++++|++.+..-+.-+..++
T Consensus 26 Pe~aRtlGk~irk~R~~~~~vk~El~~E---------l~~~ELrk~l~~~~~~i~~~~ 74 (214)
T PRK04654 26 PKAARFAGLWVRRARMQWDSVKQELERE---------LEAEELKRSLQDVQASLREAE 74 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777776532 134455554444444344443
No 51
>PRK09546 zntB zinc transporter; Reviewed
Probab=57.13 E-value=1e+02 Score=33.29 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004110 17 NNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 76 (773)
Q Consensus 17 ~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd 76 (773)
...+++|++++|.+|.++- ...+....++-.|+..+-+-+.++.-+..+|..|.+.
T Consensus 156 ~~~l~~i~~~ld~lE~~l~----~~~~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~ 211 (324)
T PRK09546 156 SEFIEELHDKIIDLEDNLL----DQQIPPRGELALLRKQLIVMRRYMAPQRDVFARLASE 211 (324)
T ss_pred HHHHHHHHHHHHHHHHHHh----cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444544444432 1111122488899999999999998888888777643
No 52
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=57.10 E-value=15 Score=33.67 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 7 KAKSETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
+-..||.+||++-|+.|+.+++.++.++..+
T Consensus 73 ~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~ 103 (120)
T PF02996_consen 73 MSLEEAIEFLKKRIKELEEQLEKLEKELAEL 103 (120)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999998887544
No 53
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=56.21 E-value=66 Score=34.95 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004110 12 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 77 (773)
Q Consensus 12 a~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~ 77 (773)
..|-+-+.|++++.++|.+|.++..-..+ ..-.++-++++.+-+-+.++..+..+++.|....
T Consensus 148 i~d~~~~~le~i~~~~~~ie~~l~~~~~~---~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~ 210 (322)
T COG0598 148 IVDNYFPVLEQIEDELEAIEDQLLASTTN---EELERLGELRRSLVYLRRALAPLRDVLLRLARRP 210 (322)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcCccH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 44556677788888888888776432211 1224788899988888888888666666666554
No 54
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=54.83 E-value=91 Score=32.12 Aligned_cols=78 Identities=26% Similarity=0.386 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHH----HHHHHHHHHHHHHHhhhCCC--CChhhHHHHHHHHHH
Q 004110 19 LVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSIT----RHKAHIMKLELILRLLDNDE--LSPEQVNDVKDLLED 92 (773)
Q Consensus 19 ~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~Ie----Rhk~HI~KLE~iLRlLdNd~--LdPe~V~dIKDDIey 92 (773)
....++.++++..+.++||.. .+|.+.+|++.++.-|. ++.-=..+.|.|=..+..+- .+-+.+.++|+-|+.
T Consensus 116 ~~~~~~~~L~k~~~~~~Kl~~-~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~ 194 (216)
T cd07627 116 YWQSAESELSKKKAQLEKLKR-QGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEI 194 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777743 23444556655555444 44444446677777776665 357888899999999
Q ss_pred HHHhC
Q 004110 93 YVERN 97 (773)
Q Consensus 93 YVEsN 97 (773)
|+++-
T Consensus 195 ~~e~~ 199 (216)
T cd07627 195 YLESA 199 (216)
T ss_pred HHHHH
Confidence 99885
No 55
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=54.49 E-value=33 Score=32.13 Aligned_cols=72 Identities=24% Similarity=0.312 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 004110 7 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR-PPRLTHLETSITRHKAHIMKLELILRLLDNDEL 78 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~-~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~L 78 (773)
.++++..+=|.+.++++.+.++.+|.+++.|..++-=.+ .-++.+++..+..-+-+++-|+.+++||=..+|
T Consensus 31 ~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~~l 103 (106)
T PF10805_consen 31 YAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLENEL 103 (106)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777888899999999999999998864321100 226777777788888888888888888754443
No 56
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=53.83 E-value=74 Score=36.09 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHH-HhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCh-----------------
Q 004110 19 LVSELESQIDSFEA-ELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSP----------------- 80 (773)
Q Consensus 19 ~IdeL~~QiE~lEa-EiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdP----------------- 80 (773)
.++.|+.|++-+.. -+..+.. ...--..+++.++..-.....+|+.+|..|++=.+++
T Consensus 45 l~~~l~~Q~~~L~~~~~~~~~~----~~~~~~~~f~~l~~~ld~~~~~L~~~l~~Lr~t~v~~~~~~~~~~~ktL~DFVd 120 (412)
T PF04108_consen 45 LRRGLKQQLKLLYKKVRSSLLI----VYEWGQRDFKDLVKELDPADARLEQTLDMLRNTKVPPFFRPPGEEPKTLYDFVD 120 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCccccCCCCCCCcHHHhcC
Confidence 44556677777777 2222211 0111234777888888888999999999999877776
Q ss_pred -hhHHHHHHHHHHHHHhCCC
Q 004110 81 -EQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 81 -e~V~dIKDDIeyYVEsNQd 99 (773)
+.|+.|++.|+.|+++-+.
T Consensus 121 ~~~v~~L~~~l~~~i~~~~~ 140 (412)
T PF04108_consen 121 EDSVEILRENLKISIDELQA 140 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999988653
No 57
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=53.77 E-value=53 Score=29.54 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHH-HHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhC
Q 004110 21 SELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAH-IMKLELILRLLDNDELSPEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 21 deL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~H-I~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsN 97 (773)
|+|+.+++.+-.+++.|.......-....++++..++.+-.+ ..+++.+...+ -+++.++-+.++.||..|
T Consensus 1 e~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~~~~V~e~ 72 (94)
T PF05957_consen 1 EDLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQA------REQAREAAEQTEDYVREN 72 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHC
Confidence 467778888888888776322111122333333333221111 12222222222 367778888899998876
No 58
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=53.44 E-value=23 Score=33.20 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
|+...||.+||++-|+.|+++++.++.++.++
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l 113 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKL 113 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568899999999999999999999997655
No 59
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=53.13 E-value=31 Score=40.35 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 7 KAKSETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
+-..-+..--+...+||++|+|.++.|++.++
T Consensus 65 kVnqSALteqQ~kasELEKqLaaLrqElq~~s 96 (475)
T PRK13729 65 KVRQHATTEMQVTAAQMQKQYEEIRRELDVLN 96 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444556667788899999999988877654
No 60
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=52.63 E-value=1e+02 Score=33.35 Aligned_cols=39 Identities=23% Similarity=0.419 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHH
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLED 92 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIey 92 (773)
+.++++..++|-+-...+||..+|+| |.+|.++|+-.+.
T Consensus 164 e~ee~~erlk~le~E~s~LeE~~~~l------~~ev~~L~~r~~E 202 (290)
T COG4026 164 EYEEVQERLKRLEVENSRLEEMLKKL------PGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc------hhHHHHHHHHHHH
Confidence 45567777777777788888888877 5666666665543
No 61
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=52.10 E-value=1.1e+02 Score=28.27 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 5 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 5 ~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
+=+...|++.-|+=-|+||+.++..+..|++.+.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~ 45 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999999988764
No 62
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=51.83 E-value=87 Score=34.31 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 14 DWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 14 dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
.++.+.++.|.+.++.++.+.+.|.
T Consensus 145 ~ll~gl~~~L~~~~~~L~~D~~~L~ 169 (325)
T PF08317_consen 145 QLLEGLKEGLEENLELLQEDYAKLD 169 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666677777777777776664
No 63
>PHA02562 46 endonuclease subunit; Provisional
Probab=51.80 E-value=1e+02 Score=35.21 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLd 74 (773)
.+.+++..++..+.=+.+++..+.+++
T Consensus 256 ~L~~l~~~~~~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 256 ALNKLNTAAAKIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566666666666666776666664
No 64
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=51.63 E-value=32 Score=36.82 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC---hhhHHHHHHH
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS---PEQVNDVKDL 89 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld---Pe~V~dIKDD 89 (773)
.++|-..|.|++++.|.+|.+.++|..+ -+ ++..+=......=|+.-+..|-.-|.-+++|++. -.+|.+++|+
T Consensus 52 nkli~K~l~ei~~~qd~reK~~~~I~ss-L~--eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e 128 (230)
T PF03904_consen 52 NKLIIKYLSEIEEKQDIREKNLKEIKSS-LE--ETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNIAQNEIKKVREE 128 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544320 00 0000001112233555566666666666666654 2334444555
Q ss_pred HHHHHH
Q 004110 90 LEDYVE 95 (773)
Q Consensus 90 IeyYVE 95 (773)
.+-+++
T Consensus 129 ~~~ml~ 134 (230)
T PF03904_consen 129 NKSMLQ 134 (230)
T ss_pred HHHHHH
Confidence 555544
No 65
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=51.33 E-value=31 Score=36.58 Aligned_cols=29 Identities=28% Similarity=0.514 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 8 AKSETRDWLNNLVSELESQIDSFEAELEG 36 (773)
Q Consensus 8 eK~Ea~dwL~~~IdeL~~QiE~lEaEiEk 36 (773)
-|.|+..|.+..|++|+.+......++..
T Consensus 185 ~~~e~e~~y~~k~~~l~~~~~~~~~~~~~ 213 (312)
T PF00038_consen 185 NREELEEWYQSKLEELRQQSEKSSEELES 213 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccccccccccccccccch
Confidence 34455555555555555555554444443
No 66
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=51.23 E-value=39 Score=37.38 Aligned_cols=72 Identities=25% Similarity=0.142 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHh
Q 004110 18 NLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 96 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEs 96 (773)
--|++|++-|=+...|+|+-+..|.|+ +|+++.++.|-+.|.+|=|.|-|- |.++ +|.|+...-||...+|.
T Consensus 5 ~~~~~~~~~i~k~nee~~~~~~~~~k~----~e~~qkl~sr~~~~~ekke~i~r~--n~k~-~d~v~~~~~~~~~~~er 76 (359)
T KOG4398|consen 5 MRIEQLKQTICKGNEEMEKNSEGLLKT----KEKNQKLYSRAQRHQEKKEKIQRH--NRKL-GDLVEKKTIDLRSHYER 76 (359)
T ss_pred HHHHHHHHHHhcCcHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh--hhhc-chHHHHHHHHHHHHHHH
Confidence 346677777766666776665544444 678888899999999999988874 3333 67777776666666655
No 67
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=51.20 E-value=1.6e+02 Score=32.05 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHH
Q 004110 57 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLE 91 (773)
Q Consensus 57 eRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIe 91 (773)
++.+.+.++++...+|++.+.+.-.++.+.+.++.
T Consensus 172 ~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~ 206 (423)
T TIGR01843 172 QQLEVISEELEARRKLKEKGLVSRLELLELERERA 206 (423)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34444455666677777777776666555444433
No 68
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.92 E-value=50 Score=39.78 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 004110 48 RLTHLETSITRHKAHIMKLEL 68 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~ 68 (773)
+|+.|+..+++-+--+..||.
T Consensus 482 ~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 482 RIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444454444444444444443
No 69
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=49.76 E-value=28 Score=33.26 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 7 KAKSETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
+...||.+||++-|+.|+.+++.++.++..+
T Consensus 90 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~ 120 (140)
T PRK03947 90 KDLDEAIEILDKRKEELEKALEKLEEALQKL 120 (140)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999998655
No 70
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=49.08 E-value=1.5e+02 Score=33.76 Aligned_cols=97 Identities=9% Similarity=0.198 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCC-------ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCC---
Q 004110 7 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR-------PPRLTHLETSITRHKAHIMKLELILRLLDND--- 76 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~-------~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd--- 76 (773)
.+...+.+||.+-+++++.+++..|.++...-.|.+--. ..++.+++..+...+--+..++..++.|.+-
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~ 236 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGG 236 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344578999999999999999999999887643332111 1356666666666666666666655555431
Q ss_pred ---C--------CC--hhhHHHHHHHHHHHHHhCCCCccc
Q 004110 77 ---E--------LS--PEQVNDVKDLLEDYVERNQDDFEE 103 (773)
Q Consensus 77 ---~--------Ld--Pe~V~dIKDDIeyYVEsNQdDF~E 103 (773)
. +. -+++.+++..+......+.+|...
T Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~ 276 (498)
T TIGR03007 237 EEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPD 276 (498)
T ss_pred CCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChH
Confidence 0 11 244666666666666666664443
No 71
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=48.58 E-value=55 Score=37.78 Aligned_cols=68 Identities=26% Similarity=0.332 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTVKK-GKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDEL 78 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KK-gKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~L 78 (773)
-.+.-|++=|++|+.|++.++..++.+.... ......+++.++..+..-+-++..||.+|+-|.....
T Consensus 163 vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~ 231 (475)
T PF10359_consen 163 VQIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSES 231 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3567788889999999999999988875411 1111235666666777777777777777777766554
No 72
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.51 E-value=59 Score=39.91 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=18.1
Q ss_pred HHHHHHHHhhhCCCCChhhHHHHHHHHHHH
Q 004110 64 MKLELILRLLDNDELSPEQVNDVKDLLEDY 93 (773)
Q Consensus 64 ~KLE~iLRlLdNd~LdPe~V~dIKDDIeyY 93 (773)
..++.++|-|......-..+.+++..++..
T Consensus 579 ~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~ 608 (771)
T TIGR01069 579 KEVESIIRELKEKKIHKAKEIKSIEDLVKL 608 (771)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 345666666666555566666666666554
No 73
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=47.21 E-value=2.1e+02 Score=30.05 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q 004110 48 RLTHLETSITRHKAHIM 64 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~ 64 (773)
++++|+..|+...-.-.
T Consensus 85 el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 85 ELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555554444443333
No 74
>PRK04406 hypothetical protein; Provisional
Probab=47.07 E-value=66 Score=28.78 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 19 LVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 73 (773)
Q Consensus 19 ~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlL 73 (773)
+|+.|+..++.||..+-=+ +..|++|...+.+....|.+|+.-||+|
T Consensus 5 ~~~~le~Ri~~LE~~lAfQ--------E~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQ--------EQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred hHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666665544111 1246688888889999999999888888
No 75
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=46.84 E-value=74 Score=38.92 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC
Q 004110 50 THLETSITRHKAHIMKLELILRLLDN 75 (773)
Q Consensus 50 e~Le~~IeRhk~HI~KLE~iLRlLdN 75 (773)
++++...+||+.-.+|++.+|++|..
T Consensus 600 eR~e~a~d~Qe~L~~R~~~vl~~l~~ 625 (717)
T PF10168_consen 600 ERYEEAKDKQEKLMKRVDRVLQLLNS 625 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45777778888889999999999955
No 76
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=46.81 E-value=67 Score=36.65 Aligned_cols=62 Identities=23% Similarity=0.391 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhhhcc--ccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHh
Q 004110 22 ELESQIDSFEAELEGLTV--KKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 96 (773)
Q Consensus 22 eL~~QiE~lEaEiEkLs~--KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEs 96 (773)
+|..++|.+.+|..+++. ++.|++.+..+++......-+-.|+.|| +++..|++++..++..
T Consensus 39 ~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 39 ELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALE-------------AELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHh
Confidence 445556666666555553 2212222234455555555566666666 6677788888887776
No 77
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=46.70 E-value=8.2 Score=30.03 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCcc
Q 004110 81 EQVNDVKDLLEDYVERNQDDFE 102 (773)
Q Consensus 81 e~V~dIKDDIeyYVEsNQdDF~ 102 (773)
+.+++|-|+|+.-||.|-++|+
T Consensus 3 ~~~D~lLDeId~vLe~NAe~FV 24 (33)
T TIGR03687 3 EGVDDLLDEIDGVLESNAEEFV 24 (33)
T ss_pred chHHHHHHHHHHHHHHhHHHHH
Confidence 5789999999999999988664
No 78
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=46.70 E-value=88 Score=27.23 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 49 LTHLETSITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 49 ~e~Le~~IeRhk~HI~KLE~iLRlLd 74 (773)
+++|...+.++...|.+|+..|++|.
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777765
No 79
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=46.64 E-value=1.1e+02 Score=32.42 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc--ccCCCC--ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004110 15 WLNNLVSELESQIDSFEAELEGLTV--KKGKTR--PPRLTHLETSITRHKAHIMKLELILRLLDND 76 (773)
Q Consensus 15 wL~~~IdeL~~QiE~lEaEiEkLs~--KKgKk~--~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd 76 (773)
.|..+++....-++.++.++|.|.. .+..++ -.++-.++..+.+.+..+.-+..+|+.|...
T Consensus 139 il~~ivd~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~ 204 (318)
T TIGR00383 139 IFDAIIDSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRK 204 (318)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444455555555555532 111111 2367788888888887777777777666543
No 80
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=46.50 E-value=20 Score=33.49 Aligned_cols=32 Identities=31% Similarity=0.521 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
|+...||.+||.+-|+.|+++++.++.++..+
T Consensus 81 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l 112 (126)
T TIGR00293 81 EKDAEEAIEFLKKRIEELEKAIEKLQEALAEL 112 (126)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999998755
No 81
>PRK09039 hypothetical protein; Validated
Probab=46.47 E-value=41 Score=37.36 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 004110 15 WLNNLVSELESQIDSFEAELE 35 (773)
Q Consensus 15 wL~~~IdeL~~QiE~lEaEiE 35 (773)
-|+.-|+.|+.|+..+|++|+
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 82
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=46.44 E-value=2.2e+02 Score=26.11 Aligned_cols=31 Identities=16% Similarity=0.049 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 004110 49 LTHLETSITRHKAHIMKLELILRLLDNDELS 79 (773)
Q Consensus 49 ~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld 79 (773)
++.++.+.+..+-.....+.++.+.+.+..+
T Consensus 108 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 138 (181)
T PF12729_consen 108 KQLLEEFKEAWKAYRKLRDQVIELAKSGDND 138 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 3344444444444455666677777766543
No 83
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=46.40 E-value=1.1e+02 Score=34.15 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004110 5 KEKAKSETRDWLNNLVSELESQIDSFEA 32 (773)
Q Consensus 5 ~EkeK~Ea~dwL~~~IdeL~~QiE~lEa 32 (773)
.|++|+++++|- +.||+|...++.+-.
T Consensus 43 ~EQAr~~A~~fA-~~ld~~~~kl~~Ms~ 69 (301)
T PF06120_consen 43 AEQARQEAIEFA-DSLDELKEKLKEMSS 69 (301)
T ss_pred HHHHHHHHHHHH-HhhHHHHHHHHhcCH
Confidence 478899999985 457777777765543
No 84
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=46.30 E-value=1.6e+02 Score=35.20 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=35.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC----hhhHHHHHHHHHH
Q 004110 46 PPRLTHLETSITRHKAHIMKLELILRLLDNDELS----PEQVNDVKDLLED 92 (773)
Q Consensus 46 ~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld----Pe~V~dIKDDIey 92 (773)
..++++|+..++.-+-...+.+.-|+-+.++.+- +..+..+++-|+.
T Consensus 261 ~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~ 311 (650)
T TIGR03185 261 FEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQK 311 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999854 5555555555544
No 85
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.21 E-value=1e+02 Score=33.74 Aligned_cols=85 Identities=22% Similarity=0.388 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC---CC-hhhHH-H
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE---LS-PEQVN-D 85 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~---Ld-Pe~V~-d 85 (773)
++..-|+..|..+..++++.+..++.|. .....|+..|+|-+-.+.+.++=|+-|.+=+ +| .++++ +
T Consensus 162 ~iE~~l~~ai~~~~~~~~~~~~~l~~l~--------~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~E 233 (267)
T PF10234_consen 162 EIEKALKEAIKAVQQQLQQTQQQLNNLA--------SDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEE 233 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4445566777777777777777776664 1233577778888888888888777777655 22 44444 3
Q ss_pred HHHHHHHHHHhCCC-Cccc
Q 004110 86 VKDLLEDYVERNQD-DFEE 103 (773)
Q Consensus 86 IKDDIeyYVEsNQd-DF~E 103 (773)
++.--+-||+.... ||-|
T Consensus 234 L~~lY~~Y~~kfRNl~yLe 252 (267)
T PF10234_consen 234 LQKLYEIYVEKFRNLDYLE 252 (267)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 66667788888776 5543
No 86
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=46.20 E-value=41 Score=42.69 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=15.5
Q ss_pred ccchhhhhHHHhhcCCCCCCCCc
Q 004110 618 QMYNMQMLESAFYKLPQPKDSER 640 (773)
Q Consensus 618 ~~LNLnslE~ly~tFpsPwDsep 640 (773)
..-+++..|.-+.++..+-..+-
T Consensus 823 ~l~~l~~~E~~~~~~e~~~~e~~ 845 (1074)
T KOG0250|consen 823 RLEELKQKEVEKVNLEEPRAEED 845 (1074)
T ss_pred hhHHHHHHHHHHHhhhcchhhhC
Confidence 34556777888888777665543
No 87
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=45.98 E-value=1.2e+02 Score=30.71 Aligned_cols=52 Identities=23% Similarity=0.414 Sum_probs=33.6
Q ss_pred ChhhHHHHHHHHHHHHHH----HHHHHHHHhhhCCC--CChhhHHHHHHHHHHHHHhC
Q 004110 46 PPRLTHLETSITRHKAHI----MKLELILRLLDNDE--LSPEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 46 ~~r~e~Le~~IeRhk~HI----~KLE~iLRlLdNd~--LdPe~V~dIKDDIeyYVEsN 97 (773)
..|++.++.-|+.-+-++ .++|.|-..+..+- .+-+.+.|+|+-|..|++..
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~ 219 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQ 219 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456555555555444444 55666666666554 35777888999999998875
No 88
>PRK10780 periplasmic chaperone; Provisional
Probab=45.79 E-value=1.8e+02 Score=28.85 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc---ccCCCC--Ch---hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHH
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGLTV---KKGKTR--PP---RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVN 84 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkLs~---KKgKk~--~~---r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~ 84 (773)
..=|......++..++.++.|+.++.. |++.+- .. +..+|......+.-....++.-|+.-.|+.+. .-+.
T Consensus 45 ~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~~~qq~~~~~~~e~~~-~i~~ 123 (165)
T PRK10780 45 SKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQAFEQDRRRRSNEERN-KILT 123 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 334444444444444544444444332 222211 12 22333333333444444444445444433332 2333
Q ss_pred HHHHHHHHHHHhCC
Q 004110 85 DVKDLLEDYVERNQ 98 (773)
Q Consensus 85 dIKDDIeyYVEsNQ 98 (773)
.|.+-|+.|-..++
T Consensus 124 ki~~ai~~vak~~g 137 (165)
T PRK10780 124 RIQTAVKSVANKQG 137 (165)
T ss_pred HHHHHHHHHHHHcC
Confidence 45555555545554
No 89
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=45.46 E-value=67 Score=37.09 Aligned_cols=43 Identities=26% Similarity=0.423 Sum_probs=26.4
Q ss_pred hhhCCCCChhhHHHHHHHHHHHHHhCCCCcccc-ccccccccCCC
Q 004110 72 LLDNDELSPEQVNDVKDLLEDYVERNQDDFEEF-SDVDELYHLLP 115 (773)
Q Consensus 72 lLdNd~LdPe~V~dIKDDIeyYVEsNQdDF~Ef-~dde~iYD~L~ 115 (773)
.+=.+-|+-+++...|++|+.||+.|.+ |..| .++-.+|+-.-
T Consensus 77 ~VIR~Vvp~~ea~~w~~e~~~Y~~~n~~-~~~~p~~~p~~y~lYW 120 (416)
T PF07350_consen 77 VVIRGVVPREEALAWKQELKEYLKANPD-FKGFPPDDPQIYELYW 120 (416)
T ss_dssp EEECTSS-HHHHHHHHHHHHHHHHHT---TTTSSS---CCE----
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhCcc-cCCCCCCCCcEEEeec
Confidence 3445678899999999999999999965 6655 24556666543
No 90
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=45.40 E-value=1.1e+02 Score=26.10 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccC-----CCC-ChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 18 NLVSELESQIDSFEAELEGLTVKKG-----KTR-PPRLTHLETSITRHKAHIMKLELILRLL 73 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~KKg-----Kk~-~~r~e~Le~~IeRhk~HI~KLE~iLRlL 73 (773)
.-|..|+++++.++.+++++..|=. .+. .+-++.-+..++...-.+.+|+..|..|
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4467788888888888887753211 122 2346666777777777777777776655
No 91
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=45.21 E-value=13 Score=35.63 Aligned_cols=33 Identities=15% Similarity=0.534 Sum_probs=18.5
Q ss_pred CCCcceEEEeecCCCcHHHHHHHHHHhhcccccccccceeeecc
Q 004110 678 YGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRH 721 (773)
Q Consensus 678 f~~ETLFYIFY~~PgD~~Ql~AA~EL~~RgWRYHKk~k~Wf~R~ 721 (773)
|...-.||||-. |+.+ .|||.+|++...||.-.
T Consensus 29 f~i~rvy~i~~~-~~~~----------~RG~H~Hk~~~~~~~~l 61 (131)
T PF05523_consen 29 FEIKRVYYIYNV-PPGV----------IRGWHAHKKTTQWFIVL 61 (131)
T ss_dssp S---EEEEEES---SS------------EEEEEESS--EEEEEE
T ss_pred CCccEEEEEEcC-CCCC----------cccccccccccEEEEEE
Confidence 455566666554 4445 79999999999999765
No 92
>smart00340 HALZ homeobox associated leucin zipper.
Probab=45.13 E-value=32 Score=28.39 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 12 TRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 12 a~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
-|+||+.|-+.|.+++-.|+.|+..|-
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999998774
No 93
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=45.09 E-value=70 Score=28.55 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----c--ccCCC---------CChhhHHHHHHHHHHHHHHHHHHHHH
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGLT----V--KKGKT---------RPPRLTHLETSITRHKAHIMKLELIL 70 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs----~--KKgKk---------~~~r~e~Le~~IeRhk~HI~KLE~iL 70 (773)
-.+..++..-|.+.+..|+.+.+....+|...- . .+.++ ...+...|...+++-..++.+|..++
T Consensus 16 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~ 95 (127)
T smart00502 16 AAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAI 95 (127)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666667777777776666664421 1 11111 12345556666666666666666666
Q ss_pred HhhhC
Q 004110 71 RLLDN 75 (773)
Q Consensus 71 RlLdN 75 (773)
+.+++
T Consensus 96 ~~~e~ 100 (127)
T smart00502 96 NFTEE 100 (127)
T ss_pred HHHHH
Confidence 65544
No 94
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=45.07 E-value=79 Score=27.25 Aligned_cols=48 Identities=15% Similarity=0.350 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 004110 20 VSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 75 (773)
Q Consensus 20 IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdN 75 (773)
|++|+..+.+++..++.+- ...++|...+++-+.-+++|=.+..++-|
T Consensus 2 i~elEn~~~~~~~~i~tvk--------~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 2 IDELENELPRIESSINTVK--------KENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5566666666666665441 24556666777767667777666666655
No 95
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=44.57 E-value=1e+02 Score=29.11 Aligned_cols=88 Identities=10% Similarity=0.162 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCC-------------C
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND-------------E 77 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd-------------~ 77 (773)
+-++.|.+.|..|+..++.++.-.+.|..... ....-.++|+..++.-+-.+..+-..|+.|+.. .
T Consensus 6 ~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~-~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r 84 (151)
T cd00179 6 EEVEEIRGNIDKISEDVEELQKLHSQLLTAPD-ADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDR 84 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHH
Confidence 44677788888888888877777766643222 112223344444444444444444444444422 1
Q ss_pred CChhhHHHHHHHHHHHHHhCCC
Q 004110 78 LSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 78 LdPe~V~dIKDDIeyYVEsNQd 99 (773)
+--.++..|+.++..-|..+|.
T Consensus 85 ~~~~q~~~L~~~f~~~m~~fq~ 106 (151)
T cd00179 85 IRKTQHSGLSKKFVEVMTEFNK 106 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2235556677777777777765
No 96
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=44.45 E-value=20 Score=29.79 Aligned_cols=30 Identities=17% Similarity=0.482 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 9 KSETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 9 K~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
+.||.+-|.+.-|-++..||.++++|..|.
T Consensus 3 ~~EAkelLqe~~d~IEqkiedid~qIaeLe 32 (46)
T PF08946_consen 3 RAEAKELLQEHYDNIEQKIEDIDEQIAELE 32 (46)
T ss_dssp ------------THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHhHHHHHHHHHHHH
Confidence 466777777777777777777777776665
No 97
>PF11155 DUF2935: Domain of unknown function (DUF2935); InterPro: IPR021328 This family of proteins with unknown function appears to be restricted to Firmicutes. ; PDB: 3D19_B 3DBY_P.
Probab=44.42 E-value=2.7e+02 Score=26.20 Aligned_cols=87 Identities=23% Similarity=0.273 Sum_probs=46.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCC--hhhHHHHHHHH-HHHHHHHHHHHHHHhhhCCC-
Q 004110 2 KDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRP--PRLTHLETSIT-RHKAHIMKLELILRLLDNDE- 77 (773)
Q Consensus 2 lDP~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~--~r~e~Le~~Ie-Rhk~HI~KLE~iLRlLdNd~- 77 (773)
+||.|++-.+.-++..+..+.|..+.-.+..-+ ..... ..+..|-.... --+.-+.=+..+++++...+
T Consensus 27 L~p~e~~~i~~a~~f~~~F~~ll~~a~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~Fk~~l~~~~~~~~i 99 (124)
T PF11155_consen 27 LDPKEKELIQEADEFKQQFDKLLKKARSLSNGL-------VRTPQLVPALSQLNQEALEASQEFINFKKELLELILSCKI 99 (124)
T ss_dssp B-TT-HHHHHHHHHHHHHHHHHHHHHHHCHHTC--------CCT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhcccc-------CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 688887766666666666666666555544332 11111 12223222111 11222233455666667776
Q ss_pred ---CChhhHHHHHHHHHHHHH
Q 004110 78 ---LSPEQVNDVKDLLEDYVE 95 (773)
Q Consensus 78 ---LdPe~V~dIKDDIeyYVE 95 (773)
+.|--++=|-..-+||+.
T Consensus 100 ~~~l~P~l~~Hi~rEa~~yl~ 120 (124)
T PF11155_consen 100 FSNLYPLLIDHIIREAEYYLR 120 (124)
T ss_dssp TBSS-HHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHH
Confidence 469999988888999985
No 98
>PRK11637 AmiB activator; Provisional
Probab=44.02 E-value=30 Score=38.84 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=4.0
Q ss_pred hHHHHHHHHHH
Q 004110 49 LTHLETSITRH 59 (773)
Q Consensus 49 ~e~Le~~IeRh 59 (773)
++.++..|+..
T Consensus 105 i~~l~~eI~~~ 115 (428)
T PRK11637 105 IDELNASIAKL 115 (428)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 99
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=43.85 E-value=44 Score=35.03 Aligned_cols=29 Identities=7% Similarity=0.105 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 8 AKSETRDWLNNLVSELESQIDSFEAELEG 36 (773)
Q Consensus 8 eK~Ea~dwL~~~IdeL~~QiE~lEaEiEk 36 (773)
+|.-.+.=|...++..++..-.+...+|+
T Consensus 78 ~~ks~~qeLe~~L~~~~qk~~tl~e~~en 106 (203)
T KOG3433|consen 78 DRKSVLQELESQLATGSQKKATLGESIEN 106 (203)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 34445555555555555555555554443
No 100
>PRK11637 AmiB activator; Provisional
Probab=43.80 E-value=79 Score=35.61 Aligned_cols=7 Identities=0% Similarity=-0.192 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 004110 88 DLLEDYV 94 (773)
Q Consensus 88 DDIeyYV 94 (773)
+.++|+.
T Consensus 159 ~~l~~i~ 165 (428)
T PRK11637 159 AYFGYLN 165 (428)
T ss_pred HHHHHHH
Confidence 3344433
No 101
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=43.58 E-value=76 Score=34.94 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=51.9
Q ss_pred CCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhcc--ccCCC----CC----hhhHHHHHHHHHHHHHHH
Q 004110 2 KDPKEKAKSETRDWLN-------NLVSELESQIDSFEAELEGLTV--KKGKT----RP----PRLTHLETSITRHKAHIM 64 (773)
Q Consensus 2 lDP~EkeK~Ea~dwL~-------~~IdeL~~QiE~lEaEiEkLs~--KKgKk----~~----~r~e~Le~~IeRhk~HI~ 64 (773)
+||.+.+..+...||. +.|+.+-.++++.+.+||++.. ++++. +. ...+++...+..-.-||.
T Consensus 61 ~dp~~~~~~~~~~~l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ 140 (333)
T PF05816_consen 61 LDPSELKDEKKKGFLGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIA 140 (333)
T ss_pred CChhhhhhhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888764433334443 6778888888999999998864 34332 22 244556667777788888
Q ss_pred HHHHHHHhhhCCCC
Q 004110 65 KLELILRLLDNDEL 78 (773)
Q Consensus 65 KLE~iLRlLdNd~L 78 (773)
-.|.++..|++..+
T Consensus 141 ag~~~~~~l~~~~~ 154 (333)
T PF05816_consen 141 AGELKLEELEAELL 154 (333)
T ss_pred HHHHHHHHHHHhhh
Confidence 88888888887643
No 102
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=43.53 E-value=89 Score=34.57 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHH-HHHHHHHHHHHHHHHHHHHHhhhC-CCCChhhHHHHHHHHH
Q 004110 14 DWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTH-LETSITRHKAHIMKLELILRLLDN-DELSPEQVNDVKDLLE 91 (773)
Q Consensus 14 dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~-Le~~IeRhk~HI~KLE~iLRlLdN-d~LdPe~V~dIKDDIe 91 (773)
.+|.+.++.|.+.++.++.+.+.|.. ..+.+.. +....++|.--..+++++.+.-+. +..||++.+.+|+.|.
T Consensus 140 kllegLk~~L~~~~~~l~~D~~~L~~-----~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~ 214 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKEDYKLLMK-----ELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLK 214 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHH
Confidence 45788888888888888888877751 1112222 222344444444444443333333 2456777777766665
Q ss_pred HHHHh
Q 004110 92 DYVER 96 (773)
Q Consensus 92 yYVEs 96 (773)
.-...
T Consensus 215 ~~~~e 219 (312)
T smart00787 215 KLLQE 219 (312)
T ss_pred HHHHH
Confidence 54433
No 103
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=42.99 E-value=39 Score=32.22 Aligned_cols=45 Identities=27% Similarity=0.346 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHH
Q 004110 12 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSIT 57 (773)
Q Consensus 12 a~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~Ie 57 (773)
...-|.+++.+|..+++..+.+++....||++ +..|+++|+..|.
T Consensus 73 i~t~L~~v~~~l~~~~~~~~rQl~aE~~k~~~-~~~r~~~l~~~i~ 117 (118)
T PF08514_consen 73 IMTSLCDVAKSLSEELEKTQRQLEAEKKKKRK-NKSRLEELEQKIK 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHhc
Confidence 45567778888888888888887654433333 3348888888764
No 104
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=42.88 E-value=1.7e+02 Score=29.65 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHhC
Q 004110 80 PEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 80 Pe~V~dIKDDIeyYVEsN 97 (773)
.|.|.++||+|+.=|+.-
T Consensus 95 ~d~v~eLkeel~~el~~l 112 (146)
T PF05852_consen 95 TDRVEELKEELEFELERL 112 (146)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 477888888888877764
No 105
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=42.77 E-value=55 Score=26.99 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhCCCCChhhHH-HHHHHHHHHHHh
Q 004110 60 KAHIMKLELILRLLDNDELSPEQVN-DVKDLLEDYVER 96 (773)
Q Consensus 60 k~HI~KLE~iLRlLdNd~LdPe~V~-dIKDDIeyYVEs 96 (773)
.-.+.+||.|++.|+|+.++-++.- .+++-++.|=..
T Consensus 2 Ee~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c 39 (53)
T PF02609_consen 2 EEAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKC 39 (53)
T ss_dssp HHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999955544 467666655443
No 106
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=42.71 E-value=1.3e+02 Score=36.05 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=42.3
Q ss_pred CCcHHHHHHHHHH---HHHHHH---HHHHHHHHHHHHHhhhhccccCCC--C-----ChhhHHHHHHHHHHHHHHHHHHH
Q 004110 2 KDPKEKAKSETRD---WLNNLV---SELESQIDSFEAELEGLTVKKGKT--R-----PPRLTHLETSITRHKAHIMKLEL 68 (773)
Q Consensus 2 lDP~EkeK~Ea~d---wL~~~I---deL~~QiE~lEaEiEkLs~KKgKk--~-----~~r~e~Le~~IeRhk~HI~KLE~ 68 (773)
.|-+++||+|..+ -|-.+| ..|+.|+-.|+++|.-|-.+-++- . +..|..+...|+.-.-+..++|.
T Consensus 34 r~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ 113 (546)
T KOG0977|consen 34 RDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEI 113 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4678899998753 344444 579999999999999886432221 1 23444555555544444445543
Q ss_pred HH
Q 004110 69 IL 70 (773)
Q Consensus 69 iL 70 (773)
-+
T Consensus 114 ei 115 (546)
T KOG0977|consen 114 EI 115 (546)
T ss_pred HH
Confidence 33
No 107
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=42.56 E-value=1.1e+02 Score=30.58 Aligned_cols=93 Identities=22% Similarity=0.329 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC---------CCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKKG---------KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS- 79 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKg---------Kk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld- 79 (773)
.+.|+-|-+.+++...+++.+...++..+.|=. =.+..|++++-+.|...=.|-..||.|.|.|..-...
T Consensus 13 ~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~sV 92 (157)
T PF04136_consen 13 REECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSSV 92 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCcc
Confidence 345566666666666677777766666553211 0124588899999999999999999999999877643
Q ss_pred -hhhHHHHHHHH---HHHHHhCCCCccc
Q 004110 80 -PEQVNDVKDLL---EDYVERNQDDFEE 103 (773)
Q Consensus 80 -Pe~V~dIKDDI---eyYVEsNQdDF~E 103 (773)
-+...++-+-| =.||++|-+ |.|
T Consensus 93 ~~~~F~~~L~~LD~cl~Fl~~h~~-fke 119 (157)
T PF04136_consen 93 NSDSFKPMLSRLDECLEFLEEHPN-FKE 119 (157)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhh-hhh
Confidence 22222332222 246777643 544
No 108
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=42.25 E-value=26 Score=35.01 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
|+...||.+||++-|++|++-++.++.++++|.
T Consensus 89 e~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~ 121 (145)
T COG1730 89 EKSADEAIEFLKKRIEELEKAIEKLQQALAELA 121 (145)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999998886
No 109
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=41.55 E-value=92 Score=28.66 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 8 AKSETRDWLNNLVSELESQIDSFEAELE 35 (773)
Q Consensus 8 eK~Ea~dwL~~~IdeL~~QiE~lEaEiE 35 (773)
.+.|+...|.+-++.|+..++.++.+++
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~ 87 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEE 87 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555544
No 110
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=41.38 E-value=1.1e+02 Score=36.18 Aligned_cols=89 Identities=20% Similarity=0.359 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC----------
Q 004110 9 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDEL---------- 78 (773)
Q Consensus 9 K~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~L---------- 78 (773)
.+..++.+...|++++.+++.+..+++ +|...=+.|+-.|..|....|-|...-+
T Consensus 103 a~~~~~~~~~~l~~~e~~~~~i~~~l~---------------~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~ 167 (569)
T PRK04778 103 AKHEINEIESLLDLIEEDIEQILEELQ---------------ELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPAL 167 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchH
Confidence 344555555555666555555555554 4555555666666666655554432221
Q ss_pred C--hhhHHHHHHHHHHHHHhCCC-CccccccccccccCCC
Q 004110 79 S--PEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 115 (773)
Q Consensus 79 d--Pe~V~dIKDDIeyYVEsNQd-DF~Ef~dde~iYD~L~ 115 (773)
+ .+++..|.+++..|.+-+.. ||.+ -.++++.|.
T Consensus 168 ~~le~~l~~~e~~f~~f~~l~~~Gd~~~---A~e~l~~l~ 204 (569)
T PRK04778 168 DELEKQLENLEEEFSQFVELTESGDYVE---AREILDQLE 204 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHH
Confidence 1 35677888999999999877 6654 456666664
No 111
>PLN03188 kinesin-12 family protein; Provisional
Probab=41.24 E-value=3e+02 Score=36.22 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCC-CChhhHHHHHHHHHHHHHHHHHH-----HHHHhhhCCC-----CChhhHHHHHH
Q 004110 20 VSELESQIDSFEAELEGLTVKKGKT-RPPRLTHLETSITRHKAHIMKLE-----LILRLLDNDE-----LSPEQVNDVKD 88 (773)
Q Consensus 20 IdeL~~QiE~lEaEiEkLs~KKgKk-~~~r~e~Le~~IeRhk~HI~KLE-----~iLRlLdNd~-----LdPe~V~dIKD 88 (773)
|..|.++|..|+.|++.|-.+ +.. ....-.-...+..|+-.|+-|.+ ++|--+|||. ||-+.|+.+-+
T Consensus 448 vn~LrelIr~Lk~EL~rLK~~-~~~p~~~n~~y~t~~~~r~sl~~l~~~~l~~~~~lp~i~~d~~~~m~ide~~ve~~~~ 526 (1320)
T PLN03188 448 VNFLREVIRQLRDELQRVKAN-GNNPTNPNVAYSTAWNARRSLNLLKSFGLGPPPSLPHVDEDGDEEMEIDEEAVERLCV 526 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCCCCCCcccccchhHHHHHHHHHhccCCCCcCCCccccccchhhhcchhHHHHHHH
Confidence 444555555666665555322 111 00001112234456666666553 2344567774 55566655221
Q ss_pred ---------HHHHHHHhC----CCCccccccccccccCCCCCccccchh
Q 004110 89 ---------LLEDYVERN----QDDFEEFSDVDELYHLLPLDKVESLED 124 (773)
Q Consensus 89 ---------DIeyYVEsN----QdDF~Ef~dde~iYD~L~Ld~~e~~e~ 124 (773)
++..||+.. .+.+.++.++++--++...+..+++.+
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1320)
T PLN03188 527 QVGLQPAGAAEGNNVDMGRVESIHSSDQQSIIKQGSEDTDVDMEEAISE 575 (1320)
T ss_pred HhcccchhHHHHHHHhhhcccccccccchhhhcccccccchhhhhhhcc
Confidence 223444443 223444545555556566666655544
No 112
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=41.24 E-value=65 Score=36.51 Aligned_cols=49 Identities=14% Similarity=0.260 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhC
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsN 97 (773)
+++++-..++..+.-..-++.+..||+++. |++..+.++++++...+.-
T Consensus 60 ~L~~iv~~~~~l~~~~~e~~~~~ell~~e~-D~el~~~a~~e~~~l~~~l 108 (367)
T PRK00578 60 SLKAKLDTLEELRQRLDDLEELLELAEEED-DEETLAEAEAELKALEKKL 108 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHH
Confidence 344444444555555566666788886654 8887777777777655544
No 113
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=40.90 E-value=2.7e+02 Score=36.50 Aligned_cols=21 Identities=19% Similarity=0.029 Sum_probs=12.8
Q ss_pred ChhhHHHHHHHHHHHHHhCCC
Q 004110 79 SPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 79 dPe~V~dIKDDIeyYVEsNQd 99 (773)
+.|++-+|--|+--+-|.+..
T Consensus 1374 SfEetv~il~~aa~~~ekd~~ 1394 (1605)
T KOG0260|consen 1374 SFEETVDILMDAAAHAEKDPC 1394 (1605)
T ss_pred cHHHHHHHHHHHHhhhccCCC
Confidence 456666666666666665543
No 114
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=40.75 E-value=1.8e+02 Score=28.85 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 49 LTHLETSITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 49 ~e~Le~~IeRhk~HI~KLE~iLRlLd 74 (773)
++..+..+...+.=+++++.-++-|.
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566666665555
No 115
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=40.68 E-value=1e+02 Score=32.43 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhhhcc--cc-CCCC-C--h-hhHHHHHHHHHHHHHHHHHHHHHHhhh-CCCCChhhHHHHHHHHHH
Q 004110 22 ELESQIDSFEAELEGLTV--KK-GKTR-P--P-RLTHLETSITRHKAHIMKLELILRLLD-NDELSPEQVNDVKDLLED 92 (773)
Q Consensus 22 eL~~QiE~lEaEiEkLs~--KK-gKk~-~--~-r~e~Le~~IeRhk~HI~KLE~iLRlLd-Nd~LdPe~V~dIKDDIey 92 (773)
.|++|+..||.+|++... .+ .... . . -+.+++.+++-- |..||-|. +..-....+..|+|||+-
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK-------~~ql~~~~~~~~~~~~~l~~v~~Dl~~ 171 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYK-------ERQLRELEEGRSKSGKNLKSVREDLDT 171 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHH-------HHHHHhhhccCCCCCCCHHHHHHHHHH
Confidence 366777777777666543 11 1111 1 1 245555555432 33344444 333457788888888763
No 116
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.18 E-value=54 Score=29.71 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 7 KAKSETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
+-..|++..|.--|+||++.+.+|..|.-.+
T Consensus 14 qqAvdTI~LLQmEieELKEknn~l~~e~q~~ 44 (79)
T COG3074 14 QQAIDTITLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 4456677777777777777777776665433
No 117
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=40.12 E-value=10 Score=44.62 Aligned_cols=53 Identities=25% Similarity=0.439 Sum_probs=37.8
Q ss_pred ChhhHHHHHHHHHHHHHHH--HHHHHHHhhhCCC-CC--hhhHHHHHHHHHHHHHhCCC
Q 004110 46 PPRLTHLETSITRHKAHIM--KLELILRLLDNDE-LS--PEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 46 ~~r~e~Le~~IeRhk~HI~--KLE~iLRlLdNd~-Ld--Pe~V~dIKDDIeyYVEsNQd 99 (773)
+.|++.|+++++.+..-+- +.| +|=||+|+. || -..|..|-|-|+--|-.|-+
T Consensus 402 e~Ri~~l~~~v~d~~~d~wsynaE-LlVlleN~~tld~~Ds~~~~L~ekvk~qL~~na~ 459 (550)
T PF00509_consen 402 EKRIDNLEKKVDDKIADVWSYNAE-LLVLLENQRTLDLHDSNVNNLYEKVKRQLRENAE 459 (550)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGEE
T ss_pred HHHHHHHHHhhhccchhhhcccHH-HHHHhccccchhhhHHHHHHHHHHHHHHHhccch
Confidence 4588888888877765543 333 566788887 55 55677888888888888765
No 118
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=39.83 E-value=78 Score=28.75 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 76 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd 76 (773)
|+.+-|++.|.-+..-++.++.=++++. +..=+..++..+..|+-|+..|...|+-|--+
T Consensus 1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~------~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~ 60 (111)
T PF09537_consen 1 ETIEALNDLLKGLHDGIEGYEKAAEKAE------DPELKSLFQEFAQERQQHAEELQAEIQELGGE 60 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5677788888888888888888776553 23345678899999999999999999888743
No 119
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=39.68 E-value=39 Score=31.98 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004110 51 HLETSITRHKAHIMKLELILR 71 (773)
Q Consensus 51 ~Le~~IeRhk~HI~KLE~iLR 71 (773)
+|+.-|+.|+-||++||.-|+
T Consensus 80 kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 80 KLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 344445559999999987653
No 120
>PHA03011 hypothetical protein; Provisional
Probab=39.61 E-value=1.2e+02 Score=29.35 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHH
Q 004110 15 WLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 90 (773)
Q Consensus 15 wL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDI 90 (773)
-|.+.+|+|..|+..+-.|+.-+. ..+..++..|..+-.||..|. .+|+.+|+.|
T Consensus 61 ai~e~ldeL~~qYN~L~dEYn~i~--------Ne~k~~~~iIQdn~d~I~~Lr-------------aeIDkLK~ni 115 (120)
T PHA03011 61 AIIEILDELIAQYNELLDEYNLIE--------NEIKDLEIIIQDNDDEIHFLR-------------AEIDKLKENI 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhchHHHHHHH-------------HHHHHHHHHH
Confidence 356677777777777777766553 234467778888888888776 5666666654
No 121
>PF13166 AAA_13: AAA domain
Probab=39.12 E-value=87 Score=37.05 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHH
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYV 94 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYV 94 (773)
.+++++..|+.|+-.+.+++..+..+. +.+.-..+..++++|+.|.
T Consensus 371 ~i~~~n~~i~~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~ 416 (712)
T PF13166_consen 371 IIDELNELIEEHNEKIDNLKKEQNELK-DKLWLHLIAKLKEDIEEYQ 416 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 456677777788777777776555555 3333334455555555444
No 122
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=39.00 E-value=2.5e+02 Score=30.73 Aligned_cols=68 Identities=22% Similarity=0.317 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCh-hhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPP-RLTHLETSITRHKAHIMKLELILRLL 73 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~-r~e~Le~~IeRhk~HI~KLE~iLRlL 73 (773)
.++..++++||.+-|++++.+++..|.++...-.|.+=-..+ .....-..+..-+--+..+|.-|..|
T Consensus 165 ~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 165 ERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999999998887654333322211 12223333444444444444444433
No 123
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.93 E-value=1e+02 Score=36.28 Aligned_cols=88 Identities=20% Similarity=0.354 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC----------
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS---------- 79 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld---------- 79 (773)
..+.+.+...|++++.+++.+..+++ +|...=+.|+-.|..|....|-|...-++
T Consensus 100 ~~~i~~~~~~l~~~e~~i~~i~~~l~---------------~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~ 164 (560)
T PF06160_consen 100 KQAIKEIEEQLDEIEEDIKEILDELD---------------ELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIE 164 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHH
Confidence 34444455555555555555555544 44444445555555555444433322111
Q ss_pred --hhhHHHHHHHHHHHHHhCCC-CccccccccccccCCC
Q 004110 80 --PEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 115 (773)
Q Consensus 80 --Pe~V~dIKDDIeyYVEsNQd-DF~Ef~dde~iYD~L~ 115 (773)
-+.+..|.+++..|.+-+.. ||.+ -.+++..|.
T Consensus 165 ~Le~~L~~ie~~F~~f~~lt~~GD~~~---A~eil~~l~ 200 (560)
T PF06160_consen 165 ELEKQLENIEEEFSEFEELTENGDYLE---AREILEKLK 200 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHH
Confidence 25666788888888888766 5554 456666653
No 124
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=38.93 E-value=33 Score=34.13 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKK 41 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KK 41 (773)
.|.||-|++-...|+.|+.++..|.|||+..|
T Consensus 22 ~es~drIKeEf~~lqaq~hslk~E~eKla~EK 53 (135)
T PF03920_consen 22 SESCDRIKEEFQFLQAQYHSLKLECEKLASEK 53 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcchhhccc
Confidence 58999999999999999999999999998655
No 125
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=38.69 E-value=1.3e+02 Score=27.41 Aligned_cols=50 Identities=26% Similarity=0.308 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhhhcc--ccCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 004110 21 SELESQIDSFEAELEGLTV--KKGKTRPPRLTHLETSITRHKAHIMKLELIL 70 (773)
Q Consensus 21 deL~~QiE~lEaEiEkLs~--KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iL 70 (773)
.+|..++|.+.++...++. ++.|+..+..++|.......+.-|..||.-+
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666555552 2222222556666667777777777777333
No 126
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=38.57 E-value=92 Score=37.61 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc--ccC--CCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTV--KKG--KTRPPRLTHLETSITRHKAHIMKLELIL 70 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~--KKg--Kk~~~r~e~Le~~IeRhk~HI~KLE~iL 70 (773)
..++=|..-|++|+.|+..+++++..... ||. -+.-..++.++..++|-+..|.+||.-+
T Consensus 636 ~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q~ 699 (759)
T KOG0981|consen 636 KSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQM 699 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhhc
Confidence 46778999999999999999999876532 111 1111267888999999999999998543
No 127
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=38.56 E-value=1.3e+02 Score=29.05 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC----CC--hhhHHHHHHHH
Q 004110 17 NNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE----LS--PEQVNDVKDLL 90 (773)
Q Consensus 17 ~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~----Ld--Pe~V~dIKDDI 90 (773)
-++..++++.++.|+.+++.-..++..++-..+-|.-.+.||-+-. .+|..+.|.|+... .+ -.++...+.||
T Consensus 20 ~~vR~~~Er~L~~L~~~l~~~~~~~~~kk~~~kYh~VRFfERkKa~-R~lkql~k~l~~~~~~~~~~~l~~~l~~~~~DL 98 (114)
T PF10153_consen 20 ADVRVEKERELEALKRELEEAERKEKEKKMAKKYHMVRFFERKKAT-RKLKQLEKKLEEAEDKKEIKELEKELHKLEVDL 98 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 5778889999999999988744322222222334444566665543 34555555555544 11 23445566677
Q ss_pred HHHH
Q 004110 91 EDYV 94 (773)
Q Consensus 91 eyYV 94 (773)
+|=+
T Consensus 99 ~Yv~ 102 (114)
T PF10153_consen 99 NYVI 102 (114)
T ss_pred HHHH
Confidence 6644
No 128
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=38.55 E-value=1e+02 Score=34.99 Aligned_cols=81 Identities=25% Similarity=0.276 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc----ccCCCCChhhHHHHHHHHH---HHHHHHHHHHHHHhhhCCCCChhhHHHHHH
Q 004110 16 LNNLVSELESQIDSFEAELEGLTV----KKGKTRPPRLTHLETSITR---HKAHIMKLELILRLLDNDELSPEQVNDVKD 88 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs~----KKgKk~~~r~e~Le~~IeR---hk~HI~KLE~iLRlLdNd~LdPe~V~dIKD 88 (773)
+.+.++.++.+++.+|.++..-.. +|-++-..++..|+..++. .+--...|+.++.|++. +-|++-...+++
T Consensus 4 ~~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~-e~D~~~~~~~~~ 82 (359)
T PRK00591 4 MLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEE-ESDPEMREMAKE 82 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHH
Confidence 456777888888888887755331 2222212244455554444 33445666667777763 347776666777
Q ss_pred HHHHHHHhC
Q 004110 89 LLEDYVERN 97 (773)
Q Consensus 89 DIeyYVEsN 97 (773)
++..+.+.-
T Consensus 83 e~~~l~~~l 91 (359)
T PRK00591 83 ELKELEERL 91 (359)
T ss_pred HHHHHHHHH
Confidence 666554443
No 129
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=37.91 E-value=1.2e+02 Score=27.16 Aligned_cols=47 Identities=28% Similarity=0.224 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHH----HHHHHHH
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIM----KLELILR 71 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~----KLE~iLR 71 (773)
...++-+..-|++|..|+=+.+.++. .|.....|..+||+ ||+-+++
T Consensus 29 ~~ei~~~d~~le~l~~q~~k~~~~~~---------------~L~~~~~r~~l~vQlt~EkLdel~~ 79 (80)
T PF11488_consen 29 FKEIDSKDKELEELYQQDCKTEMEVK---------------MLETQDPRDELNVQLTQEKLDELLY 79 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhchhhHHhHHHHHHhHHHHhc
Confidence 34444555555555555555554443 44566666666655 5665554
No 130
>PHA03161 hypothetical protein; Provisional
Probab=37.91 E-value=2.9e+02 Score=28.25 Aligned_cols=59 Identities=17% Similarity=0.275 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHH
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 90 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDI 90 (773)
+-..=|.++|..|+..|+.-+.|++.|.. +.+|| +..+|.+ .|.|.++||||
T Consensus 54 ~~~~~i~~~v~~l~~~I~~k~kE~~~L~~----------------fd~kk--l~~~E~L----------~drv~eLkeel 105 (150)
T PHA03161 54 KKQKSIEGMLQAVDLSIQEKKKELSLLKA----------------FDRHK--LSAAEDL----------QDKILELKEDI 105 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------cCHHH--HHHHHHH----------HHHHHHHHHHH
Confidence 33445677777888888877777766641 11111 2222222 47899999999
Q ss_pred HHHHHhC
Q 004110 91 EDYVERN 97 (773)
Q Consensus 91 eyYVEsN 97 (773)
+.=||.-
T Consensus 106 ~~ELe~l 112 (150)
T PHA03161 106 HFEIEAL 112 (150)
T ss_pred HHHHHHH
Confidence 9988773
No 131
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=37.91 E-value=24 Score=39.48 Aligned_cols=84 Identities=21% Similarity=0.385 Sum_probs=58.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHH---------------HHHHhhhCCCCChhhHHHHHHH-----------HHHHHHhCC
Q 004110 45 RPPRLTHLETSITRHKAHIMKLE---------------LILRLLDNDELSPEQVNDVKDL-----------LEDYVERNQ 98 (773)
Q Consensus 45 ~~~r~e~Le~~IeRhk~HI~KLE---------------~iLRlLdNd~LdPe~V~dIKDD-----------IeyYVEsNQ 98 (773)
.+.|...|+.|.++|+-+.-.|| -++-+--+..+++++++.|++- |||||+.++
T Consensus 158 ~~~Re~~L~~W~~~~~~~~p~l~W~EfaAatGSTLgIF~L~a~A~~p~~t~~~a~~i~~aYFPwI~gLHILLDy~IDq~E 237 (330)
T PF10776_consen 158 PEEREPRLKSWFERHRDKYPELEWWEFAAATGSTLGIFALFAYAADPDLTPEDAEKIKDAYFPWICGLHILLDYFIDQEE 237 (330)
T ss_pred hhhhHHHHHHHHHHhhhcCCCccHHHHHHHhccHHHHHHHHHHHcCCCCCHHHHHHHHHcccHHHHHHHHHHHHHhhhHh
Confidence 35799999999999998753333 3566777888999999999984 899999886
Q ss_pred C------Cccccccccc-cccCCCCCccccchhhhhc
Q 004110 99 D------DFEEFSDVDE-LYHLLPLDKVESLEDLVTI 128 (773)
Q Consensus 99 d------DF~Ef~dde~-iYD~L~Ld~~e~~e~~v~~ 128 (773)
| .|..|+++++ +.+-|-.=-.+++++...+
T Consensus 238 Dr~~GdLNFv~YY~~~~~~~~Rl~~f~~~A~~~~~~L 274 (330)
T PF10776_consen 238 DREGGDLNFVFYYPDEEEMEERLKYFVEKALEQASRL 274 (330)
T ss_pred HhcCCCceeeeeCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 5 5666655544 4444544344444444444
No 132
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=37.72 E-value=1.8e+02 Score=35.47 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh--CCCCChhhHHHHHHHHHHHHHhC
Q 004110 20 VSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD--NDELSPEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 20 IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLd--Nd~LdPe~V~dIKDDIeyYVEsN 97 (773)
..+|..-+|+|...++++- |+..+. ----++-..++|-+.++.+||.+|.+|. ++.-...-+.-+++-|.+.-+.|
T Consensus 212 ~~~l~vll~qCr~~v~~v~-~~~~~~-G~Sv~l~~~L~Rl~Q~L~Ri~~Ll~~l~~~~~~~~~~~~~L~~~Lv~~~~~r~ 289 (643)
T PF10136_consen 212 LKHLRVLLDQCREQVDRVR-KHLEKY-GVSVSLVFLLERLRQQLDRIELLLDLLVDDSPDRRRAIVRLFKELVRAECRRN 289 (643)
T ss_pred HHHHHHHHHHHHHHHHHHH-Hhcccc-CeeHHHHHHHHHHHHHHHHHHHHHHHHcccCchhhHHHHHHHHHHHHHHHHhc
Confidence 3455666777777777663 222221 1223677889999999999999999999 33333455555666666655555
No 133
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=37.63 E-value=32 Score=34.33 Aligned_cols=12 Identities=42% Similarity=0.556 Sum_probs=6.4
Q ss_pred HHHHHhhhCCCC
Q 004110 67 ELILRLLDNDEL 78 (773)
Q Consensus 67 E~iLRlLdNd~L 78 (773)
..|+.|||-+.|
T Consensus 100 ~av~allD~d~l 111 (155)
T PF06810_consen 100 KAVKALLDLDKL 111 (155)
T ss_pred HHHHHhcCHHHe
Confidence 345556655554
No 134
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=37.60 E-value=93 Score=28.96 Aligned_cols=65 Identities=18% Similarity=0.365 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCC---
Q 004110 23 LESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD--- 99 (773)
Q Consensus 23 L~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd--- 99 (773)
|++.|+.+=.-..+-+ |++..=.+.+|+.++++- |-. +|.| .-||+.|+.|-.++ +.|.|
T Consensus 3 LE~ai~~lI~~FhkYa---G~~~tLsk~Elk~Ll~~E------lp~---~l~~-~~d~~~vd~im~~L----D~n~Dg~v 65 (91)
T cd05024 3 LEHSMEKMMLTFHKFA---GEKNYLNRDDLQKLMEKE------FSE---FLKN-QNDPMAVDKIMKDL----DDCRDGKV 65 (91)
T ss_pred HHHHHHHHHHHHHHHc---CCCCcCCHHHHHHHHHHH------hHH---HHcC-CCCHHHHHHHHHHh----CCCCCCcC
Confidence 4444444444444444 333334677888887653 222 3344 44899999888887 45665
Q ss_pred Ccccc
Q 004110 100 DFEEF 104 (773)
Q Consensus 100 DF~Ef 104 (773)
||.||
T Consensus 66 dF~EF 70 (91)
T cd05024 66 GFQSF 70 (91)
T ss_pred cHHHH
Confidence 88887
No 135
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.54 E-value=98 Score=33.14 Aligned_cols=35 Identities=14% Similarity=0.396 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 004110 18 NLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLE 67 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE 67 (773)
.++-+|..|+|.++.||. +|+-.||++.+.+++|.
T Consensus 54 ~~~~~l~~ql~~lq~ev~---------------~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDID---------------SLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHHHH
Confidence 345688888888888865 55777888777777765
No 136
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=37.37 E-value=2.2e+02 Score=31.53 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc--ccCCCCChhhHHHHHHHHHHHHHHHHHHHHH-------HhhhCC-CCCh---hh
Q 004110 16 LNNLVSELESQIDSFEAELEGLTV--KKGKTRPPRLTHLETSITRHKAHIMKLELIL-------RLLDND-ELSP---EQ 82 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs~--KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iL-------RlLdNd-~LdP---e~ 82 (773)
|..+||.+-.-+|.++.++|.|+. -.+ .....++++=..|.|.+.+..++..+| ..|.+. .+.. +.
T Consensus 137 ld~iVd~~ad~lE~~~~~ld~ls~~if~~-~~~~~~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~~~~~~~~~~ 215 (316)
T PRK11085 137 FETKIEQLADEIENIYSDLEKLSRVIMEG-HQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQ 215 (316)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHH
Confidence 444555555555555555555542 111 111134454456667777776666655 555443 3444 55
Q ss_pred HHHHHHHHHHHH
Q 004110 83 VNDVKDLLEDYV 94 (773)
Q Consensus 83 V~dIKDDIeyYV 94 (773)
+.++-+||+.-.
T Consensus 216 ~~~~~~Di~~l~ 227 (316)
T PRK11085 216 AREILRDIESLL 227 (316)
T ss_pred HHHHHHHHHHHH
Confidence 666777774333
No 137
>smart00338 BRLZ basic region leucin zipper.
Probab=37.20 E-value=2e+02 Score=24.20 Aligned_cols=46 Identities=30% Similarity=0.442 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELIL 70 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iL 70 (773)
.-+++.=...|++|+.+++.|+.+.+ +|...+..-+.++..|..++
T Consensus 18 ~~~R~rKk~~~~~Le~~~~~L~~en~---------------~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 18 RRSRERKKAEIEELERKVEQLEAENE---------------RLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHh
Confidence 34556666778888888888888865 44555555555555555444
No 138
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=37.07 E-value=1.1e+02 Score=36.53 Aligned_cols=49 Identities=6% Similarity=0.131 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCC---CccccccccccccCCCCCc
Q 004110 61 AHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD---DFEEFSDVDELYHLLPLDK 118 (773)
Q Consensus 61 ~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd---DF~Ef~dde~iYD~L~Ld~ 118 (773)
.++.+++..|. .+ +++.|++..+.++.|+...=+ ||.- .-+|+..|++.
T Consensus 542 ~~~~~~~~~l~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~k~~~~~~~~~ 593 (595)
T PRK01433 542 SLLDNIKEAVH---AR--DIILINNSIKEFKSKIKKSMDTKLNIII----NDLLKGKNINQ 593 (595)
T ss_pred HHHHHHHHHHh---cC--CHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHhccCChhh
Confidence 34444554443 33 677777666666666666322 3332 46677766653
No 139
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.04 E-value=41 Score=28.45 Aligned_cols=15 Identities=27% Similarity=0.570 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHh
Q 004110 20 VSELESQIDSFEAEL 34 (773)
Q Consensus 20 IdeL~~QiE~lEaEi 34 (773)
|.+|+.+++.++.|.
T Consensus 26 i~~l~~~i~~l~~e~ 40 (80)
T PF04977_consen 26 IAELQKEIEELKKEN 40 (80)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 140
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.85 E-value=59 Score=33.99 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 18 NLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 73 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlL 73 (773)
.-+.+|++|++.++++++.+... -..+..+++..++.-+..|..|+.-.+-|
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~----~~~~~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNT----WNQRTAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777666655321 12345555555555555555555444444
No 141
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=36.67 E-value=2e+02 Score=29.76 Aligned_cols=86 Identities=23% Similarity=0.193 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCh----hhHHHHH
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGLTVKKGKTR-PPRLTHLETSITRHKAHIMKLELILRLLDNDELSP----EQVNDVK 87 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~-~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdP----e~V~dIK 87 (773)
+..|..-+++|+.++-...||+|-+-.+..|.. ..++-.++.++..---=|.+||.+|..+..+.-.. +=|.-+.
T Consensus 45 i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~~d~~~~l~~Gvem~~ 124 (193)
T COG0576 45 IAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDDKDPEKALLEGVEMTL 124 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 444555555555555555566554421111111 23556677777777778889999988887773222 2267788
Q ss_pred HHHHHHHHhCC
Q 004110 88 DLLEDYVERNQ 98 (773)
Q Consensus 88 DDIeyYVEsNQ 98 (773)
+.+..-|+.++
T Consensus 125 ~~l~~~L~k~G 135 (193)
T COG0576 125 DQLLDALEKLG 135 (193)
T ss_pred HHHHHHHHHCC
Confidence 88888888887
No 142
>PHA03065 Hypothetical protein; Provisional
Probab=36.66 E-value=87 Score=36.40 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=38.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhC
Q 004110 45 RPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 45 ~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsN 97 (773)
++.|++.++..+.||+.-|++||..+..| .++-+-.++||.|++-=+..+
T Consensus 85 ReKRr~a~~~~~kRK~~ei~~l~~~i~~l---d~~d~~yEEikt~~~lrI~Kl 134 (438)
T PHA03065 85 REKRRKASKNTIKRKREEIEKLEDDIKNL---DVDDEMYEEIKTDLELKIDKL 134 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHHH
Confidence 46689999999999999999999887433 455667778888887655543
No 143
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=36.62 E-value=1.6e+02 Score=26.75 Aligned_cols=44 Identities=16% Similarity=0.332 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCC----CCChhhHHHHHHHHH
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDND----ELSPEQVNDVKDLLE 91 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd----~LdPe~V~dIKDDIe 91 (773)
-..+|+..+.-.+|-+.-||..++..+.+ .|++++|..=|..|.
T Consensus 40 ~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~ 87 (97)
T PF09177_consen 40 LKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVS 87 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999988 688888776555554
No 144
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=36.48 E-value=1.7e+02 Score=33.50 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhhhcc--ccCCCCChh-hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHh
Q 004110 22 ELESQIDSFEAELEGLTV--KKGKTRPPR-LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 96 (773)
Q Consensus 22 eL~~QiE~lEaEiEkLs~--KKgKk~~~r-~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEs 96 (773)
+|..|+|.+.+|..+++. ++.|++.+. .++|+..+..-+-.|+.|| +++.+|+++++..+..
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELS-------------AALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHh
Confidence 444555555555555543 221222223 5666666666677777777 5566677777776666
No 145
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=36.36 E-value=1.7e+02 Score=33.44 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccC-C-CCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHH
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGLTVKKG-K-TRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 90 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkLs~KKg-K-k~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDI 90 (773)
.+-|.+.+.+|+.+++.++..+.+|...|. . ....+++.++.+++..+.+..+|+.+. +++..|++.+
T Consensus 336 ~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~----------~~~~~l~~~l 405 (451)
T PF03961_consen 336 LEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELK----------EELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 355666677777777777777766654222 1 223345555555555555555554432 3444555555
Q ss_pred HHH
Q 004110 91 EDY 93 (773)
Q Consensus 91 eyY 93 (773)
+.+
T Consensus 406 ~~~ 408 (451)
T PF03961_consen 406 ERS 408 (451)
T ss_pred Hhh
Confidence 554
No 146
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=36.36 E-value=57 Score=31.68 Aligned_cols=84 Identities=24% Similarity=0.261 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCC-CCChhhHHHHHHHHHHHHHHHHHHHHHHhh-hCCCCC--hhhHHHHHHHH
Q 004110 15 WLNNLVSELESQIDSFEAELEGLTVKKGK-TRPPRLTHLETSITRHKAHIMKLELILRLL-DNDELS--PEQVNDVKDLL 90 (773)
Q Consensus 15 wL~~~IdeL~~QiE~lEaEiEkLs~KKgK-k~~~r~e~Le~~IeRhk~HI~KLE~iLRlL-dNd~Ld--Pe~V~dIKDDI 90 (773)
=|...|++|+.++..+.+|+|.+-.+-.+ +...+...++.++...=-=+..||.+++.+ .++... -+-+..|.+.|
T Consensus 22 ~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~~~~~g~~~~~~~l 101 (165)
T PF01025_consen 22 ELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAKSNEEEESLLEGLEMILKQL 101 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-SHHCTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 35566666666666666666655311111 011233344555555545556777777776 334444 46677888999
Q ss_pred HHHHHhCC
Q 004110 91 EDYVERNQ 98 (773)
Q Consensus 91 eyYVEsNQ 98 (773)
+.-++.++
T Consensus 102 ~~~L~~~G 109 (165)
T PF01025_consen 102 EDILEKNG 109 (165)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHCC
Confidence 99998885
No 147
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.00 E-value=1.1e+02 Score=39.47 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHH-----H-HHHHHHHHHhhhhc
Q 004110 9 KSETRDWLNNLVSEL-----E-SQIDSFEAELEGLT 38 (773)
Q Consensus 9 K~Ea~dwL~~~IdeL-----~-~QiE~lEaEiEkLs 38 (773)
+++.+.-|..-+++| . .|++.+...|+.+.
T Consensus 863 ~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~ 898 (1293)
T KOG0996|consen 863 LEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIG 898 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 345555555555555 2 55555555555554
No 148
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=35.61 E-value=79 Score=37.59 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC-------CChhhHHHHHH
Q 004110 16 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE-------LSPEQVNDVKD 88 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~-------LdPe~V~dIKD 88 (773)
..+.|++|+++++.++.|++.+..+-++-.......+..+.++-.....+.+...++...+. +..++++++++
T Consensus 213 p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~GWvP~~~~~~l~~ 292 (646)
T PRK05771 213 PSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKKLKE 292 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEeehhHHHHHHH
Confidence 45666666666666666666554211110011111112233333334444444444444443 34677778888
Q ss_pred HHHH
Q 004110 89 LLED 92 (773)
Q Consensus 89 DIey 92 (773)
.++.
T Consensus 293 ~l~~ 296 (646)
T PRK05771 293 LIDK 296 (646)
T ss_pred HHHH
Confidence 7764
No 149
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=35.59 E-value=1.5e+02 Score=28.07 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
=+++||-.|=+.|..+++.++.++..+
T Consensus 66 l~ieYLl~~q~~L~~~~~~l~~~~~~~ 92 (118)
T PF13815_consen 66 LSIEYLLHCQEYLSSQLEQLEERLQEL 92 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888888888877644
No 150
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=35.56 E-value=36 Score=34.21 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCC----ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004110 18 NLVSELESQIDSFEAELEGLTVKKGKTR----PPRLTHLETSITRHKAHIMKLELILRLLDNDE 77 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~KKgKk~----~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~ 77 (773)
.+||++++|+++|...+.. .+-.+.- ...+++++.+++..+-.|..||..|..|++-.
T Consensus 65 ~lVD~feK~y~s~kip~p~--d~~~~~i~~~e~~~~~~~~~~~~~s~~~i~~l~keL~~i~~~~ 126 (161)
T PF05873_consen 65 GLVDEFEKQYESFKIPYPV--DKQTKEIDAQEKEAIKEAKEFEAESKKRIAELEKELANIESAR 126 (161)
T ss_dssp THHHHHHHHHCC----------TTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHhccCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5677777777777655432 0111100 12355677888888888999998888888853
No 151
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=35.45 E-value=87 Score=27.46 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLE 67 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE 67 (773)
..-+.+|...|.+++.+++.++.+++.+-. .-.....+...++.+++|+.....+-+
T Consensus 51 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~-~l~~a~~~~k~~e~L~e~~~~~~~~~~ 107 (123)
T PF02050_consen 51 QRYISALEQAIQQQQQELERLEQEVEQARE-ELQEARRERKKLEKLKERRREEYQQEE 107 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777888888888887776531 000111133455555555555444433
No 152
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=35.35 E-value=3.8e+02 Score=28.21 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CChhhHHHHHHH
Q 004110 12 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE--LSPEQVNDVKDL 89 (773)
Q Consensus 12 a~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~--LdPe~V~dIKDD 89 (773)
-+--|...+..|..-+-..|+||-.|.. .=.++++++.|..-+--+...+.=|..+..+. |.|++...+++.
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s------~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~ 160 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSS------ALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYRE 160 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 3455677777788888888888877751 01345555555555555555555555555443 789988888887
Q ss_pred HHHHHHhC
Q 004110 90 LEDYVERN 97 (773)
Q Consensus 90 IeyYVEsN 97 (773)
-..|...-
T Consensus 161 y~~~~~~w 168 (201)
T KOG4603|consen 161 YQKYCKEW 168 (201)
T ss_pred HHHHHHHH
Confidence 77776543
No 153
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.29 E-value=82 Score=40.60 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 004110 21 SELESQIDSFEAELEGLT 38 (773)
Q Consensus 21 deL~~QiE~lEaEiEkLs 38 (773)
++|++||+.++.|+|.+.
T Consensus 861 ~~~~~~ie~l~kE~e~~q 878 (1293)
T KOG0996|consen 861 KELEEQIEELKKEVEELQ 878 (1293)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555553
No 154
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.14 E-value=1e+02 Score=31.69 Aligned_cols=9 Identities=0% Similarity=-0.046 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 004110 86 VKDLLEDYV 94 (773)
Q Consensus 86 IKDDIeyYV 94 (773)
.+|.|+||=
T Consensus 168 ~~~ei~~lk 176 (189)
T PF10211_consen 168 HQEEIDFLK 176 (189)
T ss_pred HHHHHHHHH
Confidence 344444433
No 155
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.14 E-value=77 Score=33.61 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhCCC
Q 004110 86 VKDLLEDYVERNQD 99 (773)
Q Consensus 86 IKDDIeyYVEsNQd 99 (773)
+..||..||+++.-
T Consensus 236 ~~~Di~~fv~~~~t 249 (261)
T cd07674 236 VENLIRKFAESKGT 249 (261)
T ss_pred HHHHHHHHHHhCCC
Confidence 55667777777654
No 156
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=35.10 E-value=1e+02 Score=34.99 Aligned_cols=69 Identities=16% Similarity=0.282 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----ccCCCCC----hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004110 9 KSETRDWLNNLVSELESQIDSFEAELEGLTV-----KKGKTRP----PRLTHLETSITRHKAHIMKLELILRLLDNDE 77 (773)
Q Consensus 9 K~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~-----KKgKk~~----~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~ 77 (773)
|.-|-.-|...|..|.++.|.|..--|++.. +..|... ..+-+.+..+.|-+-|+.+||-++|-++.+.
T Consensus 66 k~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn 143 (401)
T PF06785_consen 66 KTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREEN 143 (401)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4556666777777776666666554444432 1111111 1344455566677777777777777776554
No 157
>PRK09039 hypothetical protein; Validated
Probab=34.98 E-value=1.5e+02 Score=32.99 Aligned_cols=50 Identities=14% Similarity=0.227 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhHHHHHHHHHHHHHh
Q 004110 47 PRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLLEDYVER 96 (773)
Q Consensus 47 ~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld-Pe~V~dIKDDIeyYVEs 96 (773)
..+..|+..|+.-|-.+..||..|..++...-+ -.+|++++..|+--+..
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888888888888888888888877754 56677778777777744
No 158
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=34.80 E-value=1.7e+02 Score=32.42 Aligned_cols=73 Identities=19% Similarity=0.315 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhHHHHHHHHHH
Q 004110 14 DWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLLED 92 (773)
Q Consensus 14 dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld-Pe~V~dIKDDIey 92 (773)
.-++..+.+|+.+++.|+.+++... .++.+|+..++.-.--+.+-+.++..|..+..- -+.+.+++..+.+
T Consensus 238 ~~~~~~l~~l~~~l~~l~~~~~~~~--------~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~ 309 (344)
T PF12777_consen 238 AEKQAELAELEEKLAALQKEYEEAQ--------KEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKN 309 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcc
Confidence 3344455555555555555555432 234455666665555566666677777777666 6677777777665
Q ss_pred HH
Q 004110 93 YV 94 (773)
Q Consensus 93 YV 94 (773)
.+
T Consensus 310 l~ 311 (344)
T PF12777_consen 310 LV 311 (344)
T ss_dssp HH
T ss_pred cH
Confidence 43
No 159
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=34.80 E-value=2.4e+02 Score=25.05 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
++.+=++..|+.|++|++.+-.|++.+
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~l 52 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDL 52 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444445555555555555544443
No 160
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.46 E-value=1e+02 Score=33.74 Aligned_cols=23 Identities=17% Similarity=0.472 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 004110 16 LNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs 38 (773)
+..-...++.+||.|..+|+++.
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~ 65 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQ 65 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555543
No 161
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=34.44 E-value=1.1e+02 Score=32.27 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 004110 47 PRLTHLETSITRHKAHIMKLELILR 71 (773)
Q Consensus 47 ~r~e~Le~~IeRhk~HI~KLE~iLR 71 (773)
....+++..|++-+-+.++|..+|+
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLE 156 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777666665
No 162
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=34.23 E-value=88 Score=29.22 Aligned_cols=68 Identities=21% Similarity=0.355 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCC
Q 004110 20 VSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 20 IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
|++++.|+..++.|+.++.. ...++++++..++..+ .+|+.+.+.|- +..++.++-.+|......+.=
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~-----~~~~l~~~~~~~~~~~---~~l~~~~~~lP----~~~~~~~ll~~l~~~A~~~gv 68 (144)
T PF04350_consen 1 LKTLQAQIQQLQQELAQLKE-----KVANLEELKKQLEQLE---QQLEELLKKLP----AEEEIPSLLEDLNRLAKKSGV 68 (144)
T ss_dssp -----------HHHHHHTGG-----G-SSHHHHHHHHHHHH---HHHHHHHHCTT----GGGHHHHHHHHHHHHHHHTT-
T ss_pred ChhHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHH---HHHHHHHHhCC----CchhHHHHHHHHHHHHHHCCC
Confidence 56778888888888765431 1234555555554443 45555555443 346788899999999888863
No 163
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=34.05 E-value=1.2e+02 Score=34.43 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc----c---cCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHH
Q 004110 16 LNNLVSELESQIDSFEAELEGLTV----K---KGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKD 88 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs~----K---KgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKD 88 (773)
|-+.++.|...++.++..+-.-.+ + |-.|...+++++-....+++--...|+-+-.||... .||+-.+.+++
T Consensus 5 ~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~-~D~em~ema~~ 83 (363)
T COG0216 5 LLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEE-KDPEMREMAEE 83 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHH
Confidence 456677777777777777654321 2 222334566666667777777777777777777766 88887777777
Q ss_pred HHHHHHHh
Q 004110 89 LLEDYVER 96 (773)
Q Consensus 89 DIeyYVEs 96 (773)
.|+..-+.
T Consensus 84 Ei~~~~~~ 91 (363)
T COG0216 84 EIKELEAK 91 (363)
T ss_pred HHHHHHHH
Confidence 77665443
No 164
>PF05062 RICH: RICH domain; InterPro: IPR007756 This domain is about 85 residues in length and very rich in charged residues, hence the name RICH (Rich In CHarged residues). It is found in secreted proteins such as PspC Q9KK19 from SWISSPROT, SpsA O33742 from SWISSPROT and IgA FC receptor P27951 from SWISSPROT from Streptococcus agalactiae. This domain could be involved in bacterial adherence or cell wall binding.
Probab=33.96 E-value=2.8e+02 Score=25.73 Aligned_cols=28 Identities=29% Similarity=0.597 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004110 4 PKEKAKSETRDWLNNLVSELESQIDSFE 31 (773)
Q Consensus 4 P~EkeK~Ea~dwL~~~IdeL~~QiE~lE 31 (773)
-.++++.++..||+.++++++.|++.-.
T Consensus 3 e~~Ka~~~V~~y~~kiL~ei~~~L~k~k 30 (82)
T PF05062_consen 3 ERKKAKDEVDEYMEKILSEIKKQLDKRK 30 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999988876533
No 165
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=33.58 E-value=3e+02 Score=24.50 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 004110 16 LNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkL 37 (773)
|.+.++.|...++.++.-+..|
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l 26 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQL 26 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 4445555555555555444444
No 166
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.52 E-value=1.9e+02 Score=34.85 Aligned_cols=93 Identities=24% Similarity=0.405 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcc----c--------cCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 004110 4 PKEKAKSETRDWLNNLVSELESQIDSFEAEL-EGLTV----K--------KGKTRPPRLTHLETSITRHKAHIMKLELIL 70 (773)
Q Consensus 4 P~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEi-EkLs~----K--------KgKk~~~r~e~Le~~IeRhk~HI~KLE~iL 70 (773)
-+|+|+.|-++-...-...|.+.|+.+.+++ |+-+. | -|-|+..++..++-.+|.-|.-|.|||.=|
T Consensus 324 rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qL 403 (654)
T KOG4809|consen 324 RDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQL 403 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4678888887777666677777777776654 11111 1 133345578889999999999999999877
Q ss_pred Hhh----hCCCCChh---hHHHHHHHHHHHHHh
Q 004110 71 RLL----DNDELSPE---QVNDVKDLLEDYVER 96 (773)
Q Consensus 71 RlL----dNd~LdPe---~V~dIKDDIeyYVEs 96 (773)
+.- |.-.++|+ +|.++.-.+.||=+.
T Consensus 404 kkAh~~~ddar~~pe~~d~i~~le~e~~~y~de 436 (654)
T KOG4809|consen 404 KKAHNIEDDARMNPEFADQIKQLEKEASYYRDE 436 (654)
T ss_pred HHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHH
Confidence 654 44456654 555566677777554
No 167
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.44 E-value=84 Score=33.73 Aligned_cols=13 Identities=23% Similarity=0.578 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhCC
Q 004110 86 VKDLLEDYVERNQ 98 (773)
Q Consensus 86 IKDDIeyYVEsNQ 98 (773)
+..||..||++++
T Consensus 243 ~~~Di~~fi~~~g 255 (269)
T cd07673 243 VESLIQKFAESKG 255 (269)
T ss_pred HHHHHHHHHHhcC
Confidence 3455555555554
No 168
>PRK04098 sec-independent translocase; Provisional
Probab=33.40 E-value=4.1e+02 Score=27.30 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHH
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 90 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDI 90 (773)
++...|-..|.++++-+..+..+++.-. ++++++.....++-. ||....-|. ..++.+.+++++.|+
T Consensus 27 ~~~r~lGk~ir~~K~~~~~~k~~l~~Ei---------~~~elk~e~~k~k~~---l~~~~~~l~-~~~~~eel~~~~~~~ 93 (158)
T PRK04098 27 QAMVDIAKFFKAVKKTINDAKSTLDKEI---------NIEEIKEEALKYKKE---FESAVESLK-KKLKFEELDDLKITA 93 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHH---HHHHHHHHH-hccChHHHHHHhhhh
Confidence 4555666666777777666666665322 455666655555544 555555554 337788888888665
Q ss_pred HH
Q 004110 91 ED 92 (773)
Q Consensus 91 ey 92 (773)
..
T Consensus 94 ~~ 95 (158)
T PRK04098 94 EN 95 (158)
T ss_pred hh
Confidence 54
No 169
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=33.39 E-value=82 Score=28.94 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=28.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhhCCCCChhhHHHHHHHH
Q 004110 50 THLETSITR-HKAHIMKLELILRLLDNDELSPEQVNDVKDLL 90 (773)
Q Consensus 50 e~Le~~IeR-hk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDI 90 (773)
.=++..+++ ..|=..-++.|=|+|+ +.|.++.+++++--+
T Consensus 48 kvm~Ki~~~g~~fv~~E~~RL~~lL~-~~l~~~K~del~~R~ 88 (95)
T PF07749_consen 48 KVMEKIIEKGEEFVAKEIARLERLLE-GKLSPEKKDELQKRL 88 (95)
T ss_dssp HHHHHHHHSGTHHHHHHHHHHHHHHH-SSS-HHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHh-ccCCHHHHHHHHHHH
Confidence 345566666 6676677777777788 999999999987544
No 170
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=33.37 E-value=60 Score=35.77 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhhhcc
Q 004110 21 SELESQIDSFEAELEGLTV 39 (773)
Q Consensus 21 deL~~QiE~lEaEiEkLs~ 39 (773)
.||++|.+.+..|+..|..
T Consensus 2 ~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4566666666666665554
No 171
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=32.94 E-value=2.9e+02 Score=35.52 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004110 47 PRLTHLETSITRHKAHIMKLELILRLLDNDE 77 (773)
Q Consensus 47 ~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~ 77 (773)
.++.+++..|.+++.+...|+.-||.|....
T Consensus 870 ~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~ 900 (1163)
T COG1196 870 AEKEELEDELKELEEEKEELEEELRELESEL 900 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888888888877554
No 172
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=32.91 E-value=3.8e+02 Score=25.27 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 12 TRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 12 a~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
..+-|.+-|......++.+....++|
T Consensus 41 ~~~~~~~e~~~~~~~~~~l~~~~~~L 66 (213)
T cd00176 41 KHEALEAELAAHEERVEALNELGEQL 66 (213)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 33334444444455555555444444
No 173
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=32.78 E-value=3.8e+02 Score=31.52 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhhhh
Q 004110 23 LESQIDSFEAELEGL 37 (773)
Q Consensus 23 L~~QiE~lEaEiEkL 37 (773)
+++++|.++.+++.|
T Consensus 187 ~~~eld~L~~ql~EL 201 (563)
T TIGR00634 187 LAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 174
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.65 E-value=1.7e+02 Score=30.52 Aligned_cols=34 Identities=24% Similarity=0.164 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhCCCCC---hhhHHHHHHHHHHHHH
Q 004110 62 HIMKLELILRLLDNDELS---PEQVNDVKDLLEDYVE 95 (773)
Q Consensus 62 HI~KLE~iLRlLdNd~Ld---Pe~V~dIKDDIeyYVE 95 (773)
.|.+||.++|---.+.=| -+++..+|.||+|-.+
T Consensus 94 ~irrLeK~~keS~ad~kd~~i~~qlrk~kidL~YVr~ 130 (199)
T KOG4484|consen 94 SIRRLEKLIKESGADVKDKQIQQQLRKLKIDLEYVRF 130 (199)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHh
Confidence 577888888822222222 4567789999987654
No 175
>PRK14155 heat shock protein GrpE; Provisional
Probab=32.56 E-value=1.9e+02 Score=30.56 Aligned_cols=81 Identities=22% Similarity=0.161 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCC---ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCh------hhHHHH
Q 004110 16 LNNLVSELESQIDSFEAELEGLTVKKGKTR---PPRLTHLETSITRHKAHIMKLELILRLLDNDELSP------EQVNDV 86 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs~KKgKk~---~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdP------e~V~dI 86 (773)
|..-|++|+.++-.+.||+|.+ ||+-.+ ..++-.++.++..-=--+.+||..|.....+..++ +=|+.|
T Consensus 25 le~e~~elkd~~lR~~AefeN~--RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~~~i~~Gvemi 102 (208)
T PRK14155 25 LKAEVAALKDQALRYAAEAENT--KRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKDSADPAVKNFIIGVEMT 102 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcccccccchHHHHHHHHHHHH
Confidence 4444444444444445554433 333111 23566677788888888899999998876443222 236667
Q ss_pred HHHHHHHHHhCC
Q 004110 87 KDLLEDYVERNQ 98 (773)
Q Consensus 87 KDDIeyYVEsNQ 98 (773)
..-+...|+.+.
T Consensus 103 ~k~~~~~L~k~G 114 (208)
T PRK14155 103 EKELLGAFERNG 114 (208)
T ss_pred HHHHHHHHHHCC
Confidence 778888888875
No 176
>PHA02562 46 endonuclease subunit; Provisional
Probab=32.40 E-value=1.6e+02 Score=33.66 Aligned_cols=26 Identities=12% Similarity=0.367 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
..-|.+-|.+|+.|++.++..+..+.
T Consensus 301 ~~~l~d~i~~l~~~l~~l~~~i~~~~ 326 (562)
T PHA02562 301 ITKIKDKLKELQHSLEKLDTAIDELE 326 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666665555443
No 177
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=32.24 E-value=1.9e+02 Score=34.54 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHhhhhccc
Q 004110 12 TRDWLNNLVSEL--ESQIDSFEAELEGLTVK 40 (773)
Q Consensus 12 a~dwL~~~IdeL--~~QiE~lEaEiEkLs~K 40 (773)
.....+..+++| ...++.++..||+|..+
T Consensus 176 ~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~ 206 (555)
T TIGR03545 176 MQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK 206 (555)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Confidence 344555555666 55566666666665544
No 178
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=32.16 E-value=3.1e+02 Score=24.64 Aligned_cols=88 Identities=13% Similarity=0.163 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCC------------CC
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND------------EL 78 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd------------~L 78 (773)
+-++.|...|..|+..++.++.-.+.+..... ....-.++|...+..-+--...+-..|+-|+.. .+
T Consensus 8 ~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~ 86 (117)
T smart00503 8 EKVEEIRANIQKISQNVAELQKLHEELLTPPD-ADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRT 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhH
Confidence 45666667777777777666666665543211 101112333333333333333333333333322 12
Q ss_pred ChhhHHHHHHHHHHHHHhCCC
Q 004110 79 SPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 79 dPe~V~dIKDDIeyYVEsNQd 99 (773)
--.+++.|+.++..=+..+|.
T Consensus 87 ~~~q~~~L~~~f~~~m~~fq~ 107 (117)
T smart00503 87 RKAQTEKLRKKFKEVMNEFQR 107 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 234556677777666666654
No 179
>PRK06285 chorismate mutase; Provisional
Probab=31.92 E-value=2e+02 Score=26.27 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHH-----------HHHHHHHHHhhhCCCCChhhHHH
Q 004110 17 NNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAH-----------IMKLELILRLLDNDELSPEQVND 85 (773)
Q Consensus 17 ~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~H-----------I~KLE~iLRlLdNd~LdPe~V~d 85 (773)
...+++|..+||.++.+|=+|-.++- .+-..|.++|.. -..|+.+..+..+..|+|+-|..
T Consensus 6 ~~~L~elR~~ID~ID~~iv~Ll~~R~--------~l~~~I~~~K~~~~~~v~dp~RE~~vl~~~~~~a~~~~l~~~~i~~ 77 (96)
T PRK06285 6 EKRLNEIRKRIDEIDEQIIDLIAERT--------SLAKEIAELKKSLGMPIFDPEREDYIHEKIRKLCEEHNIDENIGLK 77 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhhhCCCCHHHHHH
Confidence 45688899999999999877653211 111111222221 12345555555567777777776
Q ss_pred HHHHH
Q 004110 86 VKDLL 90 (773)
Q Consensus 86 IKDDI 90 (773)
|-..|
T Consensus 78 if~~I 82 (96)
T PRK06285 78 IMKIL 82 (96)
T ss_pred HHHHH
Confidence 54443
No 180
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=31.53 E-value=67 Score=36.10 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC---h---------hhHHHHHHHHHHHHHhCC--C-CccccccccccccC
Q 004110 49 LTHLETSITRHKAHIMKLELILRLLDNDELS---P---------EQVNDVKDLLEDYVERNQ--D-DFEEFSDVDELYHL 113 (773)
Q Consensus 49 ~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld---P---------e~V~dIKDDIeyYVEsNQ--d-DF~Ef~dde~iYD~ 113 (773)
+++++..++..+-.+++.|.--++ ..+.+| | --|..+++.|..++-.-. + +-.+-+.+..-||.
T Consensus 65 k~~~~~~~~~~~~~l~~~~~~~~l-~~e~~d~t~p~~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFda 143 (339)
T PRK00488 65 KQAIEAALEERKEELEAAALNARL-AAETIDVTLPGRRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEA 143 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hhccccccCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHH
Confidence 456666777777777666655443 333333 2 237889999999988743 3 22333445556788
Q ss_pred CCCCcc
Q 004110 114 LPLDKV 119 (773)
Q Consensus 114 L~Ld~~ 119 (773)
||+...
T Consensus 144 Ln~P~d 149 (339)
T PRK00488 144 LNIPKD 149 (339)
T ss_pred hCCCCC
Confidence 887544
No 181
>PRK14011 prefoldin subunit alpha; Provisional
Probab=31.49 E-value=1.3e+02 Score=29.90 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
|+...||.+||++-|++|++..+.++.-|+++.
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~ 115 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELN 115 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999999998888877553
No 182
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.41 E-value=1.8e+02 Score=34.39 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhCCCCChhhHH----HHHHHHHHHHH
Q 004110 63 IMKLELILRLLDNDELSPEQVN----DVKDLLEDYVE 95 (773)
Q Consensus 63 I~KLE~iLRlLdNd~LdPe~V~----dIKDDIeyYVE 95 (773)
-.+|+.+.+.|+.+.|+.+.|+ ++.++++++.+
T Consensus 454 ~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~ 490 (569)
T PRK04778 454 SDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEE 490 (569)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778888888887777 45566655443
No 183
>PRK03918 chromosome segregation protein; Provisional
Probab=31.14 E-value=1.7e+02 Score=35.47 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 004110 8 AKSETRDWLNNLVSELESQIDSFEAELEGLTV 39 (773)
Q Consensus 8 eK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~ 39 (773)
.+.+.++-+..-|.+|+.++..++.+++.|..
T Consensus 449 ~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~~ 480 (880)
T PRK03918 449 HRKELLEEYTAELKRIEKELKEIEEKERKLRK 480 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677777777777777777666543
No 184
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=31.03 E-value=3.2e+02 Score=22.97 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
..++.=-...|++|+.+++.|+.+.+.|
T Consensus 18 r~~R~RKk~~~~~Le~~~~~L~~en~~L 45 (64)
T PF00170_consen 18 RRSRQRKKQYIEELEEKVEELESENEEL 45 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4455556677788888888888776533
No 185
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=30.96 E-value=3.8e+02 Score=23.87 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHH-HHHH------HHHHHHHHHhhhC---CCCChhhHH
Q 004110 22 ELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITR-HKAH------IMKLELILRLLDN---DELSPEQVN 84 (773)
Q Consensus 22 eL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeR-hk~H------I~KLE~iLRlLdN---d~LdPe~V~ 84 (773)
+|++-|+.+=.-+.+-+.|||++..=..++|+..+.+ .-.. ...++.+++.+|- +.|+.++..
T Consensus 2 ~~e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~ 74 (88)
T cd05030 2 ELEKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFL 74 (88)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHH
Confidence 3555555555555555667776655567788887763 2222 3445666666542 235555443
No 186
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=30.91 E-value=72 Score=37.33 Aligned_cols=32 Identities=41% Similarity=0.364 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
-|+|+|.-+--++.+|||+.||-.|-+-||.|
T Consensus 557 ~k~k~e~~~~~k~s~delr~qi~el~~ive~l 588 (627)
T KOG4348|consen 557 IKAKVETDDVKKNSLDELRAQIIELLCIVEAL 588 (627)
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999998888866
No 187
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=30.85 E-value=2e+02 Score=27.92 Aligned_cols=61 Identities=11% Similarity=0.235 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----cccCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 004110 9 KSETRDWLNNLVSELESQIDSFEAELEGLT----VKKGKTRPPRLTHLETSITRHKAHIMKLELI 69 (773)
Q Consensus 9 K~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs----~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~i 69 (773)
+.|+++|+.+++.+++.+-..+|+.+..-. .+-.=-+....+++...|++-+..+.+||.=
T Consensus 41 ~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 41 AEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999877777766643211 1111011123456666666666666666643
No 188
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=30.80 E-value=1.1e+02 Score=30.41 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-h-hhHHHHHHHHHHHHHh
Q 004110 50 THLETSITRHKAHIMKLELILRLLDNDELS-P-EQVNDVKDLLEDYVER 96 (773)
Q Consensus 50 e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld-P-e~V~dIKDDIeyYVEs 96 (773)
..|+..++--+-|+.+||.|++.|.-+-=. + +-+.-|-.+.+..++.
T Consensus 38 ~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~e~~~~~~~ 86 (159)
T PF05974_consen 38 AALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVAEAQELIEE 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHHHHHHHHhc
Confidence 345555555578999999999999754322 3 3444566666666666
No 189
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=30.78 E-value=1.4e+02 Score=25.81 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 004110 18 NLVSELESQID 28 (773)
Q Consensus 18 ~~IdeL~~QiE 28 (773)
..|++|+.+++
T Consensus 9 ~~l~~L~~~l~ 19 (72)
T cd00089 9 SRLERLEKELS 19 (72)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 190
>PRK04325 hypothetical protein; Provisional
Probab=30.78 E-value=2e+02 Score=25.62 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLd 74 (773)
.|++|...+.+...-|.+|+.-||+|.
T Consensus 24 tIe~LN~vv~~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 24 LIDGLNATVARQQQTLDLLQAQLRLLY 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355778888888888888888888873
No 191
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=30.64 E-value=1.8e+02 Score=32.74 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
+|..+|+-+++.+|..+++.|+.|.|+|.
T Consensus 129 ~el~d~~l~~~~~l~~~~~~L~~enerL~ 157 (342)
T PF06632_consen 129 RELFDWCLDANSRLQAENEHLQKENERLE 157 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999888888875
No 192
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=30.62 E-value=2e+02 Score=32.11 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCC-CChhhHHHHHHHHHHHHHhCC
Q 004110 55 SITRHKAHIMKLELILRLLDNDE-LSPEQVNDVKDLLEDYVERNQ 98 (773)
Q Consensus 55 ~IeRhk~HI~KLE~iLRlLdNd~-LdPe~V~dIKDDIeyYVEsNQ 98 (773)
.++--..++++-|.+-||-|--. +..++|-+|+-||++||..-.
T Consensus 216 AmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~rk 260 (302)
T PF07139_consen 216 AMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIKHFVSERK 260 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhh
Confidence 44555566778887777776544 889999999999999998754
No 193
>PRK00736 hypothetical protein; Provisional
Probab=30.23 E-value=1.9e+02 Score=25.34 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 49 LTHLETSITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 49 ~e~Le~~IeRhk~HI~KLE~iLRlLd 74 (773)
|++|...+.++...|.+|+.-|++|.
T Consensus 21 ie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 21 IEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777664
No 194
>PRK02951 DNA replication terminus site-binding protein; Provisional
Probab=30.15 E-value=3.6e+02 Score=30.28 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 8 AKSETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 8 eK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
+|-+.++.|+.+.++|+..+..|...++.+.
T Consensus 2 ~~~~~i~~l~~~f~~Le~~l~~L~~~L~~~~ 32 (309)
T PRK02951 2 ARYDLVERLNTTFRQLEQELAALSQLLEQLP 32 (309)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4678899999999999999999999999864
No 195
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=30.05 E-value=2.9e+02 Score=28.52 Aligned_cols=10 Identities=30% Similarity=0.571 Sum_probs=5.9
Q ss_pred HHHHHHHHHH
Q 004110 10 SETRDWLNNL 19 (773)
Q Consensus 10 ~Ea~dwL~~~ 19 (773)
.+++.||...
T Consensus 83 ~~vI~fLq~l 92 (161)
T TIGR02894 83 QDVISFLQNL 92 (161)
T ss_pred HHHHHHHHHH
Confidence 4566666544
No 196
>PLN02678 seryl-tRNA synthetase
Probab=29.99 E-value=1.7e+02 Score=33.98 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhhhcc--ccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHh
Q 004110 23 LESQIDSFEAELEGLTV--KKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 96 (773)
Q Consensus 23 L~~QiE~lEaEiEkLs~--KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEs 96 (773)
|..++|.+.+|...++. ++.|+..+..++|...+..-+-.|..|| +++..+++.|...+-.
T Consensus 45 l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le-------------~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 45 RQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKE-------------AEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHh
Confidence 33444555555444442 2222223344555555555666666666 4555566666665555
No 197
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=29.97 E-value=1.8e+02 Score=33.53 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc------c---cc-CCCC-------------ChhhHHHHHHHHHHHHHHHHHH
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLT------V---KK-GKTR-------------PPRLTHLETSITRHKAHIMKLE 67 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs------~---KK-gKk~-------------~~r~e~Le~~IeRhk~HI~KLE 67 (773)
..++=|++-|++|+.|++.++.++-.+. . +| +|.+ ....+..+..|++.+.-|.|||
T Consensus 277 ~~m~k~~~ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~i~k~~ 356 (391)
T smart00435 277 KSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLE 356 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888887775332 0 00 0000 0123445567889999999999
Q ss_pred HHHHhhhCC
Q 004110 68 LILRLLDND 76 (773)
Q Consensus 68 ~iLRlLdNd 76 (773)
.-++.=+++
T Consensus 357 ~q~~~ke~n 365 (391)
T smart00435 357 VQATDKEEN 365 (391)
T ss_pred HHHHhhhcC
Confidence 877664444
No 198
>PRK11546 zraP zinc resistance protein; Provisional
Probab=29.83 E-value=4e+02 Score=26.93 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=37.2
Q ss_pred CCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHH
Q 004110 2 KDPKEKAKSETR-DWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKA 61 (773)
Q Consensus 2 lDP~EkeK~Ea~-dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~ 61 (773)
|.|+++++.+.+ +=......+|++|+=.-..||..|.. +.+.++++|.+|..-|..-+-
T Consensus 44 LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~-~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLT-ANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHH
Confidence 677777766543 44556678899999988999888853 333444455555554444433
No 199
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=29.80 E-value=37 Score=30.53 Aligned_cols=16 Identities=50% Similarity=0.665 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhh
Q 004110 22 ELESQIDSFEAELEGL 37 (773)
Q Consensus 22 eL~~QiE~lEaEiEkL 37 (773)
||+.+++.++.+++.+
T Consensus 2 eL~~~~~~l~~~~~~~ 17 (93)
T PF00816_consen 2 ELEAQIKELEKEIEER 17 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6778888888776644
No 200
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=29.77 E-value=43 Score=30.12 Aligned_cols=36 Identities=17% Similarity=0.384 Sum_probs=27.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 3 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 3 DP~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
||..+.....++=|..+|.+|+..++.+..|+..|+
T Consensus 2 ~~t~r~s~~p~~~Ls~vl~~LqDE~~hm~~e~~~L~ 37 (79)
T PF06657_consen 2 DPTSRPSQSPGEALSEVLKALQDEFGHMKMEHQELQ 37 (79)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556677888999999999998888888885
No 201
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=29.73 E-value=1.7e+02 Score=25.79 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 004110 20 VSELESQIDSFEAELEGLT 38 (773)
Q Consensus 20 IdeL~~QiE~lEaEiEkLs 38 (773)
+++|..+||.++.+|=+|-
T Consensus 1 L~~lR~~Id~iD~~i~~Ll 19 (83)
T TIGR01791 1 IEELRQEIEEIDKSILDLI 19 (83)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3677788888888876664
No 202
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=29.71 E-value=1.1e+02 Score=29.17 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004110 51 HLETSITRHKAHIMKLELILRLLDND 76 (773)
Q Consensus 51 ~Le~~IeRhk~HI~KLE~iLRlLdNd 76 (773)
+|...+.++..-+.|||..++.|+.+
T Consensus 67 qL~~~ldeYE~~VrrLE~fvkvLn~~ 92 (99)
T PF11083_consen 67 QLGLYLDEYEKLVRRLEKFVKVLNIS 92 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 45668889999999999999999843
No 203
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=29.59 E-value=92 Score=27.27 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhhCCCCC-hhhHHHHHHHHHHHHHhCCC
Q 004110 61 AHIMKLELILRLLDNDELS-PEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 61 ~HI~KLE~iLRlLdNd~Ld-Pe~V~dIKDDIeyYVEsNQd 99 (773)
--+.+||.|++.|+++.|+ -+.+..+++-++.+=..++-
T Consensus 5 e~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~~ 44 (67)
T TIGR01280 5 EALSELEQIVQKLESGDLALEEALNLFERGMALARRCEKK 44 (67)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999 45555678877776655543
No 204
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=29.56 E-value=2.4e+02 Score=23.43 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHh
Q 004110 58 RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 96 (773)
Q Consensus 58 Rhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEs 96 (773)
+-......||..++-.+.... +.+..+-+.|+.+|+.
T Consensus 50 ~l~~~~~~lE~~~~~~~~~~~--~~~~~~~~~l~~~l~~ 86 (90)
T PF01627_consen 50 RLAELAEQLEQALKSGDKPEA--EELEQLLDELEAMLEQ 86 (90)
T ss_dssp HHHHHHHHHHHHHHTTHHHHS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccch--hHHHHHHHHHHHHHHH
Confidence 334456677777777666655 6677777777777764
No 205
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.54 E-value=1.4e+02 Score=35.84 Aligned_cols=79 Identities=23% Similarity=0.200 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhh-------cc------ccCCC-C---ChhhHHHHHHHHH
Q 004110 6 EKAKSETRDWLNNLVSELESQIDS----------FEAELEGL-------TV------KKGKT-R---PPRLTHLETSITR 58 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~----------lEaEiEkL-------s~------KKgKk-~---~~r~e~Le~~IeR 58 (773)
-.+|.+-|+-|+..+++|+.|||. +.+|.++| .. ||-.. + +...++++.+.-.
T Consensus 303 ie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~ 382 (581)
T KOG0995|consen 303 IEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFID 382 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888777652 22333322 21 11111 1 2356666666666
Q ss_pred HHHHHHHHHHH-HHhhhCCCCChhhHH
Q 004110 59 HKAHIMKLELI-LRLLDNDELSPEQVN 84 (773)
Q Consensus 59 hk~HI~KLE~i-LRlLdNd~LdPe~V~ 84 (773)
.+--|.+|-+. +....|-++.|+...
T Consensus 383 ~~~l~~~i~l~~~~~~~n~~~~pe~~~ 409 (581)
T KOG0995|consen 383 LNSLIRRIKLGIAENSKNLERNPERAA 409 (581)
T ss_pred HHHHHHHHHHHHHHHhccCCcCCccCc
Confidence 66667777766 666677566666554
No 206
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=29.50 E-value=3.8e+02 Score=31.45 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=20.1
Q ss_pred HHHHhhhCCCCChhhHHHHHHHHHH
Q 004110 68 LILRLLDNDELSPEQVNDVKDLLED 92 (773)
Q Consensus 68 ~iLRlLdNd~LdPe~V~dIKDDIey 92 (773)
.++++.++++++.+..+++..++|.
T Consensus 494 ~l~~~~~~~~i~~~~~~~~~~~ld~ 518 (525)
T TIGR00831 494 AVVDLRAGGLISQEVLLELMRELDL 518 (525)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhhH
Confidence 4788888888888888888888743
No 207
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=29.41 E-value=1.7e+02 Score=37.56 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004110 12 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 76 (773)
Q Consensus 12 a~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd 76 (773)
.++.|+.+++.|++|+-.++.+..... ++.++-..++.+|+..|+.++--|.+++.-|.-|+|.
T Consensus 662 ~ie~le~e~~~l~~~~~~l~~~~~~~e-~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~ 725 (1074)
T KOG0250|consen 662 EIEDLEREASRLQKEILELENQRREAE-KNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNT 725 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555555554444433322111 1111112355666677777777777777777778884
No 208
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=29.37 E-value=1.7e+02 Score=39.75 Aligned_cols=77 Identities=30% Similarity=0.340 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-------------CCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTVKK-------------GKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 77 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KK-------------gKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~ 77 (773)
|.++=++..+++|++|+...|.|+..|..|. .|.-..+|.+|+..++--+.-..|+|.-.+-|.
T Consensus 1055 e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~--- 1131 (1930)
T KOG0161|consen 1055 ESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLS--- 1131 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3333455555555555555555555443211 111134566666666666666666666665553
Q ss_pred CChhhHHHHHHHHHHH
Q 004110 78 LSPEQVNDVKDLLEDY 93 (773)
Q Consensus 78 LdPe~V~dIKDDIeyY 93 (773)
.++.+++++++.=
T Consensus 1132 ---~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1132 ---EELEELKEELEEQ 1144 (1930)
T ss_pred ---HHHHHHHHHHHHH
Confidence 4455555555544
No 209
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.37 E-value=4.1e+02 Score=26.00 Aligned_cols=76 Identities=17% Similarity=0.320 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhC----CC--CChhhHHHHHHHHHHHH
Q 004110 21 SELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN----DE--LSPEQVNDVKDLLEDYV 94 (773)
Q Consensus 21 deL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdN----d~--LdPe~V~dIKDDIeyYV 94 (773)
+.+++.+++..+++++|..+ ...+..|+++++..|..-+-++..++.-+..+.. +- ..-+.+.+||.-|..|+
T Consensus 120 ~~~~~~l~~k~~~~~kl~~~-~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~ 198 (218)
T cd07596 120 QSLKKDLASKKAQLEKLKAA-PGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFA 198 (218)
T ss_pred HHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444321 2224456666666665555555544433333322 21 12344666777777777
Q ss_pred HhC
Q 004110 95 ERN 97 (773)
Q Consensus 95 EsN 97 (773)
+..
T Consensus 199 ~~q 201 (218)
T cd07596 199 RLQ 201 (218)
T ss_pred HHH
Confidence 664
No 210
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=29.33 E-value=1.2e+02 Score=26.43 Aligned_cols=20 Identities=45% Similarity=0.556 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 004110 19 LVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 19 ~IdeL~~QiE~lEaEiEkLs 38 (773)
+|+||+..|..|++||+.+.
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~ 41 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLE 41 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999988764
No 211
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=29.26 E-value=3.6e+02 Score=26.81 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhC---CCCChhhHHH
Q 004110 9 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN---DELSPEQVND 85 (773)
Q Consensus 9 K~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdN---d~LdPe~V~d 85 (773)
|.+.+=.+..+||||+..+--.-++++ -++++..+++-...+-.|-..|..-.. ..+..++|..
T Consensus 21 K~~~rie~~G~lDEl~a~igla~~~~~-------------~~~~~~~L~~iq~~L~~l~~~la~~~~~~~~~i~~~~v~~ 87 (163)
T PF01923_consen 21 KDDPRIEAYGTLDELNAFIGLARSEIK-------------EEELREILERIQNELFDLGAELATPEEDEEPEITEEDVQE 87 (163)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHTHCT-------------THHHHHHHHHHHHHHHHHHHHHHTTTTSSSCS--HHHHHH
T ss_pred CCCceeeeeeeHHHHHHHHHHHHHHcC-------------chhHHHHHHHHHHHHHHHHHHHcCCCcccccccCHHHHHH
Confidence 445555677889999998888877752 123444444444444444455555443 5688999999
Q ss_pred HHHHHHHHHHhCC
Q 004110 86 VKDLLEDYVERNQ 98 (773)
Q Consensus 86 IKDDIeyYVEsNQ 98 (773)
+++.|+.|-+...
T Consensus 88 Le~~i~~~~~~~~ 100 (163)
T PF01923_consen 88 LEEEIDEYSEELP 100 (163)
T ss_dssp HHHHHHHHHHHS-
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987743
No 212
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=29.17 E-value=1.2e+02 Score=33.76 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccc--cCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 18 NLVSELESQIDSFEAELEGLTVK--KGKTRPPRLTHLETSITRHKAHIMKLELILRLL 73 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~K--KgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlL 73 (773)
..+..|+.+|+.|...+++++.+ ..++....++.++..+++-+.-+.++|.++=||
T Consensus 84 ~L~~~L~~eI~~f~~~l~~~~~~~e~~~~~~~~~~~i~~V~~~ik~LL~rId~aiPli 141 (302)
T PF05508_consen 84 PLTKDLRREIDSFDERLEEAAEKEELSKSSENQKESIKKVERYIKDLLARIDDAIPLI 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 46778888899998888888752 234444566677777777777777888776665
No 213
>COG3945 Uncharacterized conserved protein [Function unknown]
Probab=29.05 E-value=1.5e+02 Score=31.20 Aligned_cols=49 Identities=14% Similarity=0.375 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHH---HHHHHhhhCCCCChhhHHHHHHHHHHHHHhC
Q 004110 49 LTHLETSITRHKAHIMKL---ELILRLLDNDELSPEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 49 ~e~Le~~IeRhk~HI~KL---E~iLRlLdNd~LdPe~V~dIKDDIeyYVEsN 97 (773)
++-++.+.+-|++=.+-| +.++-+..|+.|+|++|.+|-|.|.-|++.-
T Consensus 7 m~~i~~lvEeH~yIlraL~iLr~~~~~~~~g~i~y~~v~~iidFi~nfaDkc 58 (189)
T COG3945 7 MDSIKLLVEEHTYILRALSILRKALDLIKNGPIDYSDVKEIIDFIRNFADKC 58 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhc
Confidence 445667777777765554 4556677889999999999999999999874
No 214
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=29.00 E-value=1.8e+02 Score=26.39 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 7 KAKSETRDWLNNLVSELESQIDSFEAELEG 36 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~lEaEiEk 36 (773)
.+..++..=|.+.|++|+.+++.|+.-|.-
T Consensus 35 ~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 35 EELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777888888888888777654
No 215
>PF09590 Env-gp36: Lentivirus surface glycoprotein; InterPro: IPR018582 The proteins in this family are envelope glycoproteins from feline immunodeficiency retrovirus. The process of lentiviral envelope glycoprotein-mediated fusion of membranes is essential for viral entry and syncytia formation [].
Probab=28.83 E-value=66 Score=38.25 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK 41 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KK 41 (773)
++||+|-|.+|+-.+.+|++|+ +|.++|.+...|
T Consensus 45 ~~eKqe~ckiLQp~Lq~iK~e~--~Egkl~~~~~GK 78 (591)
T PF09590_consen 45 PQEKQEYCKILQPKLQEIKQEM--QEGKLEEGNAGK 78 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hccccccCCcch
Confidence 6788999999999999999999 777887776544
No 216
>PLN02320 seryl-tRNA synthetase
Probab=28.69 E-value=2.6e+02 Score=33.25 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhhhcc--ccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 004110 22 ELESQIDSFEAELEGLTV--KKGKTRPPRLTHLETSITRHKAHIMKLE 67 (773)
Q Consensus 22 eL~~QiE~lEaEiEkLs~--KKgKk~~~r~e~Le~~IeRhk~HI~KLE 67 (773)
+|..++|.+.+|..+++. |+ |+.....++|......-+..|..||
T Consensus 104 ~~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~k~lk~~i~~le 150 (502)
T PLN02320 104 ALQKEVERLRAERNAVANKMKG-KLEPSERQALVEEGKNLKEGLVTLE 150 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445556666666655553 22 2222334555555555566666666
No 217
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.51 E-value=94 Score=28.09 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhhCCCCChhh-HHHHHHHHHHHHHhCC
Q 004110 59 HKAHIMKLELILRLLDNDELSPEQ-VNDVKDLLEDYVERNQ 98 (773)
Q Consensus 59 hk~HI~KLE~iLRlLdNd~LdPe~-V~dIKDDIeyYVEsNQ 98 (773)
+.--+.+||.|++.|+++.|+-++ +..+++-++.+=..++
T Consensus 12 fEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~ 52 (80)
T PRK00977 12 FEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQK 52 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999999999998544 4456766666544443
No 218
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=28.50 E-value=1e+03 Score=29.12 Aligned_cols=95 Identities=48% Similarity=0.638 Sum_probs=78.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-
Q 004110 1 MKDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS- 79 (773)
Q Consensus 1 ~lDP~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld- 79 (773)
+|||+||||+|+++||++|||||++|+|+||+| +++..|+||+|||.+||+|||+|+|++|+
T Consensus 112 klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~-----------------~~e~~~erh~~H~~~lEliLr~L~N~E~~p 174 (575)
T KOG2150|consen 112 KLDPKEKEKRDTMDWISNQIDELERQVDSFEAE-----------------ELERFIERHRWHQQKLELILRLLDNDELDP 174 (575)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHhhccccCH
Confidence 489999999999999999999999999999996 99999999999999999999999999986
Q ss_pred --hhhHH-------------HHHHHHHHHHHhCCCCcccccccccccc
Q 004110 80 --PEQVN-------------DVKDLLEDYVERNQDDFEEFSDVDELYH 112 (773)
Q Consensus 80 --Pe~V~-------------dIKDDIeyYVEsNQdDF~Ef~dde~iYD 112 (773)
.+.|. |.-+|-.-|++.|.|+-+--.+...-|.
T Consensus 175 e~v~~vqDdi~yyVe~nqdpdF~e~e~iYd~l~le~~e~~~~~~~~~~ 222 (575)
T KOG2150|consen 175 EAVNKVQDDITYYVESNQDPDFLEDETIYDDLNLEELEASMDAVAPGS 222 (575)
T ss_pred HHHhhhhHHHHHHHHhccCchhhhhhHHhhccCchhhhhhHhhhcCCc
Confidence 55543 3446667788888773222233344444
No 219
>PRK14158 heat shock protein GrpE; Provisional
Probab=28.30 E-value=1.9e+02 Score=30.21 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--hhhHHHHHHHHHHHHHhCC
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELS--PEQVNDVKDLLEDYVERNQ 98 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld--Pe~V~dIKDDIeyYVEsNQ 98 (773)
+.-.++.++..-=-=+.+||.+|....++.+. -+-|+.|...+..-++.++
T Consensus 85 ~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~i~~Gv~mi~k~l~~vLek~G 137 (194)
T PRK14158 85 LKYGNESLILEILPAVDNMERALDHADEESMSAIIEGIRMTLSMLLSTLKKFG 137 (194)
T ss_pred HHHHHHHHHHHHHhHHhHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHCC
Confidence 44445555555555677777777655443321 2334556666666666665
No 220
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=28.09 E-value=17 Score=32.49 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=17.5
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCcc
Q 004110 79 SPEQVNDVKDLLEDYVERNQDDFE 102 (773)
Q Consensus 79 dPe~V~dIKDDIeyYVEsNQdDF~ 102 (773)
..+.|++|-|+|+.-||.|-++|+
T Consensus 37 ~~~~vD~lLDeID~vLE~NAeeFV 60 (69)
T PF05639_consen 37 LTDDVDDLLDEIDSVLETNAEEFV 60 (69)
T ss_dssp CHCCHHHHHHHHTTTSSSC-----
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999665
No 221
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=28.01 E-value=1.8e+02 Score=36.37 Aligned_cols=44 Identities=27% Similarity=0.361 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHh
Q 004110 50 THLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 96 (773)
Q Consensus 50 e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEs 96 (773)
++-+.+|..|-.-+.+||.|.-.|+.| |++-+.+|+|...-++.
T Consensus 906 ~e~~~fI~qhG~tls~LEpia~~LqsD---Pe~~e~L~~~y~qA~~~ 949 (1480)
T COG3096 906 QEAARFIQQHGNTLSKLEPIASVLQSD---PEQFEQLKEDYAQAQQM 949 (1480)
T ss_pred HHHHHHHHHhcchHHhhhhHHHHHhCC---HHHHHHHHHHHHHHHHH
Confidence 345668999999999999999999864 99999999987655544
No 222
>PRK10865 protein disaggregation chaperone; Provisional
Probab=27.91 E-value=1.4e+02 Score=37.14 Aligned_cols=41 Identities=17% Similarity=0.286 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHH
Q 004110 19 LVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH 59 (773)
Q Consensus 19 ~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRh 59 (773)
.|+.|++.+..++.|++.|..++......|+++++..++..
T Consensus 411 ~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~l 451 (857)
T PRK10865 411 ELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDK 451 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 46778888888888888774433222223455555544433
No 223
>PRK03918 chromosome segregation protein; Provisional
Probab=27.89 E-value=1.3e+02 Score=36.49 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHhh
Q 004110 23 LESQIDSFEAELE 35 (773)
Q Consensus 23 L~~QiE~lEaEiE 35 (773)
|+.+++.++.+++
T Consensus 638 l~~~i~~l~~~~~ 650 (880)
T PRK03918 638 TEKRLEELRKELE 650 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 224
>PRK09343 prefoldin subunit beta; Provisional
Probab=27.84 E-value=1.5e+02 Score=28.39 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcc----cc--C----C-CCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHH
Q 004110 19 LVSELESQIDSFEAELEGLTV----KK--G----K-TRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVK 87 (773)
Q Consensus 19 ~IdeL~~QiE~lEaEiEkLs~----KK--g----K-k~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIK 87 (773)
.++.=-+.++....|+++|.. =| | | ...+-+.+++..++.-+-+|+.||.=...|. +++.+++
T Consensus 32 ~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~------~~l~e~q 105 (121)
T PRK09343 32 QIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLR------EKLKELQ 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 333334445556666666642 01 1 1 2234456666666666677777776666664 5566666
Q ss_pred HHHHHHHHh
Q 004110 88 DLLEDYVER 96 (773)
Q Consensus 88 DDIeyYVEs 96 (773)
+-|...+..
T Consensus 106 ~~l~~ll~~ 114 (121)
T PRK09343 106 AKINEMLSK 114 (121)
T ss_pred HHHHHHHHh
Confidence 666555543
No 225
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=27.71 E-value=2.3e+02 Score=30.31 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCC--CChhhHHHHHHHHHHHHHhC
Q 004110 50 THLETSITRHKAHIMKLELILRLLDNDE--LSPEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 50 e~Le~~IeRhk~HI~KLE~iLRlLdNd~--LdPe~V~dIKDDIeyYVEsN 97 (773)
.+++++-.|+.--..+.|.|-+++..+- .+-+.|.|+|.-|+.|+|+-
T Consensus 166 ~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ 215 (234)
T cd07665 166 DEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETL 215 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666667888888888776 46899999999999999984
No 226
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=27.56 E-value=3.2e+02 Score=32.01 Aligned_cols=52 Identities=29% Similarity=0.378 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRL 72 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRl 72 (773)
.+=++.+++-|..|+.|++.+.+|+.-+.. ++....+..+-|..+++..+..
T Consensus 280 ~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~-----------~~~~~~~~~~~~~~~~~~~~~~ 331 (511)
T PF09787_consen 280 KQERDHLQEEIQLLERQIEQLRAELQDLEA-----------QLEGEQESFREQPQELSQQLEP 331 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHH
Confidence 344678888899999999888888754432 3333344444555555544433
No 227
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.51 E-value=3.2e+02 Score=27.05 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q 004110 20 VSELESQIDSFEAELEG 36 (773)
Q Consensus 20 IdeL~~QiE~lEaEiEk 36 (773)
|..|+..+..+|.+||+
T Consensus 37 I~sL~~K~~~lE~eld~ 53 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDK 53 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444433
No 228
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=27.47 E-value=50 Score=28.86 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
+|-.+.|++.|.+|..++..||.|=.-|
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999999999985544
No 229
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=27.46 E-value=1.5e+02 Score=38.30 Aligned_cols=58 Identities=40% Similarity=0.539 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhhhcc----------ccCCCC--------ChhhHHHHH-------HHHHHHHHHHHHHHHHHhhh
Q 004110 20 VSELESQIDSFEAELEGLTV----------KKGKTR--------PPRLTHLET-------SITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 20 IdeL~~QiE~lEaEiEkLs~----------KKgKk~--------~~r~e~Le~-------~IeRhk~HI~KLE~iLRlLd 74 (773)
=.+|+.||-....++|.|.- +|-|.+ ..||.+|+. .|+..=-|+.+|-.-|++|.
T Consensus 1065 s~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLR 1144 (1439)
T PF12252_consen 1065 SSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLR 1144 (1439)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777751 332332 125555554 45666677788888888888
Q ss_pred CCC
Q 004110 75 NDE 77 (773)
Q Consensus 75 Nd~ 77 (773)
|++
T Consensus 1145 nEK 1147 (1439)
T PF12252_consen 1145 NEK 1147 (1439)
T ss_pred hHH
Confidence 865
No 230
>PF11176 DUF2962: Protein of unknown function (DUF2962); InterPro: IPR021346 This eukaryotic family of proteins has no known function. ; PDB: 2KKM_A.
Probab=27.43 E-value=1.9e+02 Score=29.04 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHH
Q 004110 5 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSIT 57 (773)
Q Consensus 5 ~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~Ie 57 (773)
..-...|++++|...|..-..++|+++.+ -+||+....|.+-|+..++
T Consensus 64 ~~~t~~e~~~lI~~yl~R~DeEleql~~~-----rR~gRp~s~re~~L~~~~~ 111 (155)
T PF11176_consen 64 KPFTLEEIHELIERYLHRFDEELEQLKKE-----RRKGRPPSNREDLLEQKIE 111 (155)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHH-----GGGT---TTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCHHHHHHHHHh-----hcCCCCCchHHHHHHHHHH
Confidence 34455677777777777766666666655 3456666677777777654
No 231
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.40 E-value=62 Score=37.57 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 004110 16 LNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs 38 (773)
...+|+.|++|+|.|..-+|+|-
T Consensus 49 ~l~~le~l~qqNEdLk~~~e~lr 71 (580)
T KOG3705|consen 49 TLEALEKLQQQNEDLKSILEKLR 71 (580)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHh
Confidence 45789999999999999888764
No 232
>PRK04863 mukB cell division protein MukB; Provisional
Probab=27.23 E-value=2.7e+02 Score=37.17 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCC
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
.+..++..+..|+--+.+||.+=.++....|+.+.+.+..+..+.-++.-+.
T Consensus 405 el~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~ 456 (1486)
T PRK04863 405 ALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATE 456 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888889999999999999999999988877777766666665543
No 233
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=27.14 E-value=3.6e+02 Score=25.83 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc---ccCCC-CC----hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhh
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTV---KKGKT-RP----PRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQ 82 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~---KKgKk-~~----~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~ 82 (773)
++..=|+...+.++.+++..+.|++++.. +++.+ .. .+..+++......+.-..+++.-|..-.+..+ -.-
T Consensus 36 ~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~-~~i 114 (158)
T PF03938_consen 36 DAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQELL-QPI 114 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 34444555556666666666666666543 11111 11 23444555555555555555544444433322 222
Q ss_pred HHHHHHHHHHHHHhCCCCcc
Q 004110 83 VNDVKDLLEDYVERNQDDFE 102 (773)
Q Consensus 83 V~dIKDDIeyYVEsNQdDF~ 102 (773)
...|..-|+.|.+.++=||+
T Consensus 115 ~~~i~~~v~~~a~~~g~~~V 134 (158)
T PF03938_consen 115 QKKINKAVEEYAKENGYDLV 134 (158)
T ss_dssp HHHHHHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHHHcCCeEE
Confidence 33578888888888865553
No 234
>PF08376 NIT: Nitrate and nitrite sensing; InterPro: IPR013587 The nitrate and nitrite-sensing (NIT) domain is a (~250 aa) sensor domain found in various receptor components of signal transduction pathways from different bacterial lineages []. The NIT domain is predicted to be all alpha-helical in structure []. Proteins containing a NIT domain belong to one of four known classes of prokaryotic signal transduction proteins: intracellular transcription anti-termination regulators, sensor histidine kinases, methyl-accepting chemotaxis proteins, diguanylate cyclases/phosphodiesterases. NIT-containing receptors regulate cellular functions such as gene expression (transcription anti-terminators and histidine kinases), cell motility (chemotaxis receptors), and enzyme activity (diguanylate cyclases/phosphodiesterases), in response to changes in nitrate and/or nitrite concentrations. The NIT domain is found as both an extracellular and an intracellular sensor. The NIT domain can be found in combination with other signalling domains, such as ANTAR, HAMP (IPR003660 from INTERPRO), MCP, Hemerythrins (IPR002063 from INTERPRO), CHASE (IPR006189 from INTERPRO), GGDEF (IPR000160 from INTERPRO), PAS (IPR000014 from INTERPRO), EAL (IPR001633 from INTERPRO), HK (IPR005467 from INTERPRO), GAF, REC and Hpt (IPR008207 from INTERPRO).; PDB: 4AKK_A.
Probab=27.10 E-value=1.4e+02 Score=29.76 Aligned_cols=78 Identities=13% Similarity=0.232 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhccccCC-CCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCh
Q 004110 6 EKAKSETRDWLNN----LVSELESQIDSFEAELEGLTVKKGK-TRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSP 80 (773)
Q Consensus 6 EkeK~Ea~dwL~~----~IdeL~~QiE~lEaEiEkLs~KKgK-k~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdP 80 (773)
++||.-+..||.. .-.+|+.|-...+..+..+...-.. .......++...+.....++.+|..+-+.+++..+++
T Consensus 9 Q~ERg~s~~~l~s~~~~~~~~l~~qr~~tD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~R~~vd~~~~~~ 88 (247)
T PF08376_consen 9 QQERGLSAAYLASPGKQFRAELKAQRAATDRAIAELRRALADIDDSDSDEELRDRLQEILNALDQLPQLRQQVDNRSIDP 88 (247)
T ss_dssp HHHHHHHHHHHHTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHCTT--HH-HHHHHHHHHHHGGGHHHHHHHHHHT-S-H
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhHHHHHHHHhcCCCCh
Confidence 5788888888873 4788888888888888776531111 0011112577788888888888999989999999988
Q ss_pred hhH
Q 004110 81 EQV 83 (773)
Q Consensus 81 e~V 83 (773)
.++
T Consensus 89 ~~~ 91 (247)
T PF08376_consen 89 DEA 91 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 235
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.02 E-value=1.9e+02 Score=28.61 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
+.=|.+-+.+|+.++-.+++|+-.|
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 236
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.96 E-value=1.1e+02 Score=35.87 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhHHHHHHHHHHHHHh
Q 004110 19 LVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLLEDYVER 96 (773)
Q Consensus 19 ~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld-Pe~V~dIKDDIeyYVEs 96 (773)
-+|+|+.++..+..+|..+..|| |.....+++-...+.+. ...++|+...++ -+++..+++++..++..
T Consensus 49 ~ldeln~~~n~l~k~i~~~k~kk-ke~~~~l~~~~~~~~~~--------~~~~~l~e~~~~~~~~~~~l~~el~~~~~~ 118 (455)
T KOG2509|consen 49 ELDELNKEKNKLNKEIGDLKLKK-KEDIGQLEESKAKNTEG--------AERKLLKEEAVELEEDESKLEDELYEVLLQ 118 (455)
T ss_pred HHHHHHHHHHHhhhHhhHHHHhh-cchhhHHHHhhhHhhhh--------hhhhhhHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 47889999999999887766666 33222332222222222 556666666665 45666788888888877
No 237
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=26.96 E-value=1.5e+02 Score=29.58 Aligned_cols=54 Identities=22% Similarity=0.315 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccc------CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 004110 16 LNNLVSELESQIDSFEAELEGLTVKK------GKTRPPRLTHLETSITRHKAHIMKLELI 69 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs~KK------gKk~~~r~e~Le~~IeRhk~HI~KLE~i 69 (773)
|+.-|+.+..-...|+.|+..|...| -.+...|+.+|+....-...||..+|.-
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555555555555666666655322 1223456777777777777777777754
No 238
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=26.92 E-value=1.6e+02 Score=33.44 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=28.9
Q ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhC
Q 004110 48 RLTHLETSIT---RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 48 r~e~Le~~Ie---Rhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsN 97 (773)
++..|+..++ +.+.-...|+.++.|+++ +-|++-.+.+.++++..-+.-
T Consensus 57 e~~~l~~~v~~~~~~~~~~~d~~~l~el~~~-e~D~e~~~~a~~e~~~l~~~l 108 (364)
T TIGR00020 57 ERSSLEAVLDTLEELKNSLEDLSELLELAVE-EDDEETFNELDAELKALEKKL 108 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHH
Confidence 3444444444 444445566666777764 457877777777776654444
No 239
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.92 E-value=2.4e+02 Score=25.04 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLd 74 (773)
.|++|...+.+..-.|.+|+.-||+|.
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~ 49 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLLT 49 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777788888888888887777773
No 240
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=26.91 E-value=3.4e+02 Score=28.90 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHH
Q 004110 52 LETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY 93 (773)
Q Consensus 52 Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyY 93 (773)
++....+.+.....++..-.|++.+-++..+++..+..++.-
T Consensus 117 ~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~~~a 158 (334)
T TIGR00998 117 LEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKALLSA 158 (334)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHH
Confidence 334444555566677777788888888888888777665543
No 241
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=26.70 E-value=1.7e+02 Score=35.50 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCCC------ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHH
Q 004110 19 LVSELESQIDSFEAELEGLTVKKGKTR------PPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLED 92 (773)
Q Consensus 19 ~IdeL~~QiE~lEaEiEkLs~KKgKk~------~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIey 92 (773)
.|.|+.+=.++.-.|+-.|.+|+-+-+ ..++|+||..|.+-+..+.+|+ ..|+.-+-.++.
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk-------------~~ieqaq~~~~E 146 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALK-------------GEIEQAQRQLEE 146 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH-------------hHHHHHHHHHHH
Confidence 345555555555555544444433222 1256666666666655555555 345666677778
Q ss_pred HHHhCCC
Q 004110 93 YVERNQD 99 (773)
Q Consensus 93 YVEsNQd 99 (773)
-++.|+-
T Consensus 147 l~~~n~p 153 (907)
T KOG2264|consen 147 LRETNNP 153 (907)
T ss_pred HHhhcCC
Confidence 8888876
No 242
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=26.59 E-value=2.1e+02 Score=28.62 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=34.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC-Ch-hhHHHHHHHHHHHHHhC
Q 004110 46 PPRLTHLETSITRHKAHIMKLELILRLLDNDEL-SP-EQVNDVKDLLEDYVERN 97 (773)
Q Consensus 46 ~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~L-dP-e~V~dIKDDIeyYVEsN 97 (773)
++=++.|+..++--+.||.+||.|++.|+-+-- .+ +-+.-|-.+....+...
T Consensus 32 peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~~~~~~~ 85 (147)
T cd07909 32 EELKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAEELIEET 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHHHHHHhcc
Confidence 344566777888889999999999999976632 23 44444555555555443
No 243
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=26.57 E-value=1e+02 Score=29.67 Aligned_cols=59 Identities=5% Similarity=-0.029 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 004110 12 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 71 (773)
Q Consensus 12 a~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLR 71 (773)
-++.|.+.|.+....+..++.++|..-. +--....+...++.+++|+..+..+.|.--.
T Consensus 72 fl~~L~~~i~~q~~~v~~~~~~ve~~r~-~~~ea~~~~k~~ekLker~~~~~~~~e~r~E 130 (146)
T PRK07720 72 FVTNLERTIDHYQLLVMQAREQMNRKQQ-DLTEKNIEVKKYEKMKEKKQEMFALEEKAAE 130 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777778888888888775321 0000111333677777777766666665443
No 244
>PF08641 Mis14: Kinetochore protein Mis14 like; InterPro: IPR013950 Mis14 is a kinetochore protein which is known to be recruited to kinetochores independently of CENP-A [].
Probab=26.45 E-value=1.7e+02 Score=28.50 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhhhcc---ccCCCCChhh-HHHHHHHHHHHHHHHHHHHHH
Q 004110 22 ELESQIDSFEAELEGLTV---KKGKTRPPRL-THLETSITRHKAHIMKLELIL 70 (773)
Q Consensus 22 eL~~QiE~lEaEiEkLs~---KKgKk~~~r~-e~Le~~IeRhk~HI~KLE~iL 70 (773)
+|+.++..+..++|.|.+ .++|.-+.++ +.....++..+-++.+++..+
T Consensus 37 ~L~~rv~~l~~~~e~~~v~va~lRr~~P~~i~~~~~~~~~~~~~~L~~~~~~v 89 (139)
T PF08641_consen 37 ELNERVRSLYDQLEDLTVEVAQLRRDYPRKIAEAYAKSLKAEREILEEYDEEV 89 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777764 4455555544 334445555555555544444
No 245
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=26.34 E-value=2.7e+02 Score=27.21 Aligned_cols=53 Identities=28% Similarity=0.350 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 004110 16 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS 79 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld 79 (773)
|=+.|+.|++|+-.+=+|++.| ++++.++++-|..-.--.|++-+-|.+..+.
T Consensus 6 iFd~v~~le~~l~~l~~el~~l-----------K~~l~~lvEEN~~L~lENe~LR~RL~~~~~e 58 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGL-----------KQHLGSLVEENTALRLENEKLRERLGEPTLE 58 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhHHHHhhHHHHHHHhCCcccc
Confidence 4567888888888888887765 4588899998877777778888888885554
No 246
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=26.33 E-value=1.9e+02 Score=31.44 Aligned_cols=60 Identities=25% Similarity=0.303 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccc----CC-----CCChhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 15 WLNNLVSELESQIDSFEAELEGLTVKK----GK-----TRPPRLTHLETSITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 15 wL~~~IdeL~~QiE~lEaEiEkLs~KK----gK-----k~~~r~e~Le~~IeRhk~HI~KLE~iLRlLd 74 (773)
=|++.|..|+.+|..-+++++.+..-. .. ..+......++.|+|=+.-|..||.-+|-|+
T Consensus 191 ~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~Lq 259 (259)
T PF08657_consen 191 QLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKRELQ 259 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356667777777777777776654211 10 1122455788999999999999999888764
No 247
>PF10228 DUF2228: Uncharacterised conserved protein (DUF2228); InterPro: IPR019361 This entry contains proteins that have no known function.
Probab=26.16 E-value=85 Score=33.99 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhCCCCC---hhhHHHHHHHHHHHHHhCCC-Ccc
Q 004110 64 MKLELILRLLDNDELS---PEQVNDVKDLLEDYVERNQD-DFE 102 (773)
Q Consensus 64 ~KLE~iLRlLdNd~Ld---Pe~V~dIKDDIeyYVEsNQd-DF~ 102 (773)
.+|++||+.|.+-.-+ -..+..|++=|.+.-=.|.| ||-
T Consensus 171 ~~Lk~il~~i~~a~~~~~~~~~~~~lqel~t~v~~AnDEcDfG 213 (253)
T PF10228_consen 171 AELKKILKKIVEAKNDEERQKAFAPLQELVTFVQIANDECDFG 213 (253)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccccCc
Confidence 6889999998884333 22355688777777777888 874
No 248
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=26.09 E-value=30 Score=30.45 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcc
Q 004110 19 LVSELESQIDSFEAELEGLTV 39 (773)
Q Consensus 19 ~IdeL~~QiE~lEaEiEkLs~ 39 (773)
.|.||++.|-.|.+|||.|..
T Consensus 26 sV~El~eRIalLq~EIeRlkA 46 (65)
T COG5509 26 SVAELEERIALLQAEIERLKA 46 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999865
No 249
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.09 E-value=1.1e+02 Score=27.47 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhCCCCC-hhhHHHHHHHHHHHHHhC
Q 004110 59 HKAHIMKLELILRLLDNDELS-PEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 59 hk~HI~KLE~iLRlLdNd~Ld-Pe~V~dIKDDIeyYVEsN 97 (773)
..--+.+||.|++.|+++.|. -+.+..+++-++.+=..+
T Consensus 6 fEeal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~ 45 (75)
T PRK14066 6 FETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCS 45 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445578899999999999998 444555666666554444
No 250
>PF09210 DUF1957: Domain of unknown function (DUF1957); InterPro: IPR015293 This C-terminal domain is found in a set of hypothetical bacterial proteins that have a N-terminal domain related to the glycoside hydrolase family 57 family GH57 from CAZY. The exact function of this domain has not, as yet, been defined. ; PDB: 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=26.03 E-value=1.1e+02 Score=28.95 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHH
Q 004110 52 LETSITRHKAHIMKLELILRLLDNDELSPEQVNDVK 87 (773)
Q Consensus 52 Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIK 87 (773)
-+.-.+|-+.|+.+...+..+|..+.|+.+.+.++.
T Consensus 53 ~~YA~~R~~~Hl~rF~~L~~~l~~~~id~~~L~~~E 88 (102)
T PF09210_consen 53 VEYARERFKEHLNRFWRLYDMLESGRIDEEWLEELE 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 367788999999999999999999999966665543
No 251
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=25.93 E-value=3.2e+02 Score=31.19 Aligned_cols=140 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--ccCCCC------------------ChhhHHHHHHHHHHHHHHHHHHHH
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTV--KKGKTR------------------PPRLTHLETSITRHKAHIMKLELI 69 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~--KKgKk~------------------~~r~e~Le~~IeRhk~HI~KLE~i 69 (773)
.+-.+=+..|+.--++=...|..|+|++.. ||.-|. .+.+..-...+++-.-.|.+||.+
T Consensus 228 ~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekL 307 (391)
T KOG1850|consen 228 MAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKL 307 (391)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhCCCCC-hhhHHHHHHHHHHHHHhCCC-CccccccccccccCCCCCccccchhhhhcCCCCcccCCccccccchhh
Q 004110 70 LRLLDNDELS-PEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGAPALSLKASLA 147 (773)
Q Consensus 70 LRlLdNd~Ld-Pe~V~dIKDDIeyYVEsNQd-DF~Ef~dde~iYD~L~Ld~~e~~e~~v~~~~~~~~~~~~~~~~k~~~~ 147 (773)
+|.|.-++-+ -..+.+++..|-- .|++ |... -+.---+.++..-.+-.-...++-+|.-|+|. .-++..
T Consensus 308 cRALq~ernel~~~~~~~e~~v~~---k~~~~~la~----pe~~~~~~~~~~~~~~ts~~~a~a~~~~gep~--~e~s~~ 378 (391)
T KOG1850|consen 308 CRALQTERNELNKKLEDLEAQVSA---KNAMKDLAT----PESKPCIILDSEKKLNTSSKRAAASHLEGEPK--QESSAT 378 (391)
T ss_pred HHHHHhccccHHHHHHHHhcccch---hhhhhhhcC----ccccccccccchhccCCchhcccccCCCCCcc--chhhhc
Q ss_pred cccCCCCccee
Q 004110 148 ASASQMPATVI 158 (773)
Q Consensus 148 ~~~~~~~~~~~ 158 (773)
..+..+.++..
T Consensus 379 ~~~~e~~sa~~ 389 (391)
T KOG1850|consen 379 EKPAETGSAGA 389 (391)
T ss_pred cCCCCCCCccC
No 252
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.88 E-value=4e+02 Score=28.25 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHH--------HHHHHHHHHHHhhhCC-
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHK--------AHIMKLELILRLLDND- 76 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk--------~HI~KLE~iLRlLdNd- 76 (773)
++-..++..|...+++.|+.++|-+-+= +.+.+||+ ...+++|..-+-|..-
T Consensus 105 ~~~~~~a~~~~~~vlE~Lk~~~d~l~S~-------------------r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~ 165 (246)
T cd07597 105 DLSEDEARAEEDGVLEKLKLQLDLLVSL-------------------RDLFERHEKLSLNNIQRLLKRIELNKKKLESLR 165 (246)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH-------------------HHHHHHHHhcccccHHHHHHHHHHHHHHHHHhh
Q ss_pred ---CCChhhHHHHHHHHH
Q 004110 77 ---ELSPEQVNDVKDLLE 91 (773)
Q Consensus 77 ---~LdPe~V~dIKDDIe 91 (773)
...+.+|+.+..-|.
T Consensus 166 ~~~~~~~~e~ekl~~~i~ 183 (246)
T cd07597 166 AKPDVKGAEVDKLEASII 183 (246)
T ss_pred cCCCCchhHHHHHHHHHh
No 253
>PRK00295 hypothetical protein; Provisional
Probab=25.83 E-value=2.6e+02 Score=24.56 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 49 LTHLETSITRHKAHIMKLELILRLL 73 (773)
Q Consensus 49 ~e~Le~~IeRhk~HI~KLE~iLRlL 73 (773)
|++|...+.+..-.|.+|+.-|++|
T Consensus 21 ie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 21 IQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777766666
No 254
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.63 E-value=42 Score=39.43 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=5.8
Q ss_pred cccccCCCCC
Q 004110 108 DELYHLLPLD 117 (773)
Q Consensus 108 e~iYD~L~Ld 117 (773)
-+-||.|.-+
T Consensus 73 Rt~~Dsi~yk 82 (489)
T PF11853_consen 73 RTRYDSIQYK 82 (489)
T ss_pred EEEEeccccc
Confidence 5666666544
No 255
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=25.62 E-value=1.9e+02 Score=33.25 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
.....-|.+-+.++++....|+.+||+|-
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk 239 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLK 239 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666677777777777777764
No 256
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=25.57 E-value=3.1e+02 Score=28.95 Aligned_cols=118 Identities=15% Similarity=0.183 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCC--hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHH
Q 004110 7 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRP--PRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVN 84 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~--~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~ 84 (773)
+++.+.+.-|..-|+++..-+-.+..+|+.--.+..|+-. .+-+--+.+++..+--+..++.-|-.| ++++|..-+
T Consensus 78 qk~~~~~~~l~~~~~~~kqdi~t~~e~i~~ek~~r~k~~Te~~~n~~~~~Ll~~~k~eqd~~k~~l~~l--~~~~pi~~d 155 (209)
T COG5124 78 QKLYDSSELLKKKIQEVKQDIATYKEEIDKEKATRRKKFTEGQKNYNREALLEKRKKEQDEIKKKLNSL--QKIEPIRWD 155 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHhccc--cccCchhHH
Confidence 5677788888888888888888888888765433222211 222222223322222233333222222 347788888
Q ss_pred HHHHHHHHHHHh-CCC-CccccccccccccCCCCCccccchhhhhc
Q 004110 85 DVKDLLEDYVER-NQD-DFEEFSDVDELYHLLPLDKVESLEDLVTI 128 (773)
Q Consensus 85 dIKDDIeyYVEs-NQd-DF~Ef~dde~iYD~L~Ld~~e~~e~~v~~ 128 (773)
..+.+-+.|.+. |-- |=++ .=-+.||..++|+.++ |..+-.|
T Consensus 156 ~~~~~~kk~~~~~n~~tDnI~-ilidy~c~kf~~~~~q-ir~~fgI 199 (209)
T COG5124 156 AAKIQEKKKKVHLNKTTDNIE-ILIDYLCKKFFLKPEQ-IRKEFGI 199 (209)
T ss_pred HHhhhHHHHHHHHHhhhhhHH-HHHHHHHHHcCCCHHH-HHHhcCC
Confidence 877777666554 543 3222 1235688888887765 4344433
No 257
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=25.51 E-value=1.2e+02 Score=36.07 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCCCccccccccccccCCCCCccc
Q 004110 54 TSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVE 120 (773)
Q Consensus 54 ~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQdDF~Ef~dde~iYD~L~Ld~~e 120 (773)
....||..++++++.|-..|-=+.---|.|.. +=||+-.++.||.+ .||+.|+....+
T Consensus 478 a~~rk~~~~l~q~~~l~~~L~P~g~~QERv~n----~~~f~~kyG~~~i~-----~L~~~~~~~~~~ 535 (542)
T PF10079_consen 478 AEKRKHETALRQLDRLENSLFPNGSPQERVYN----FFYFLNKYGPDFID-----RLLEALPPLDFG 535 (542)
T ss_pred HHHHHhHHHHHHHHHHHhhcCCCCCCcccchh----HHHHHHHhhHHHHH-----HHHhcCCCCcCC
Confidence 34456777777777766555544444455544 45677777787765 899988876554
No 258
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=25.47 E-value=1.5e+02 Score=28.40 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChh
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPE 81 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe 81 (773)
.+++++..++.-+-++..|..-++.|..+-++|.
T Consensus 66 ~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py 99 (132)
T PF10392_consen 66 SIEELESVLQAVRSSVESLQSSYERLRSEVIEPY 99 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 5677788888888888888888888888888864
No 259
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=25.15 E-value=5e+02 Score=26.89 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
|+.-.+-..+++..-...+.++...-.+|+|.
T Consensus 90 e~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~ 121 (219)
T PF08397_consen 90 EKKLEEDKKYITQLEKDYEKEYKRKRDELKKA 121 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555566553
No 260
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=25.12 E-value=1.1e+02 Score=27.88 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHh-CCCCcc
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER-NQDDFE 102 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEs-NQdDF~ 102 (773)
||++++....+..--+.+||.+|+-++ +...++++-.+||-.. ..+|+.
T Consensus 1 rI~eme~~y~~~~~~l~~le~~l~~~~------~~~~~~~~L~~YY~s~~w~~d~e 50 (90)
T PF14131_consen 1 RIQEMEKIYNEWCELLEELEEALEKWQ------EAQPDYRKLRDYYGSEEWMEDYE 50 (90)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCcHhHHHHHH
Confidence 577888888888888888888887775 3445677777888433 344433
No 261
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.78 E-value=2.7e+02 Score=28.01 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 004110 17 NNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 17 ~~~IdeL~~QiE~lEaEiEkLs 38 (773)
+.-+.+|..+++.+++|+|+|.
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~ 93 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLR 93 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777776664
No 262
>PRK02119 hypothetical protein; Provisional
Probab=24.77 E-value=3.2e+02 Score=24.37 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLd 74 (773)
.+++|...+.+..-.|.+|+.-||+|.
T Consensus 24 tie~LN~~v~~Qq~~id~L~~ql~~L~ 50 (73)
T PRK02119 24 LLEELNQALIEQQFVIDKMQVQLRYMA 50 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888888888888873
No 263
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.72 E-value=1.4e+02 Score=38.23 Aligned_cols=18 Identities=22% Similarity=0.578 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 004110 19 LVSELESQIDSFEAELEG 36 (773)
Q Consensus 19 ~IdeL~~QiE~lEaEiEk 36 (773)
+|.||.+.+|.+-..+++
T Consensus 365 virElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 365 VIRELREEVEKLREQLEQ 382 (1714)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 566666666666555544
No 264
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.65 E-value=2.1e+02 Score=36.75 Aligned_cols=82 Identities=24% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhcc----ccCCCC--ChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 6 EKAKSETRDW------LNNLVSELESQIDSFEAELEGLTV----KKGKTR--PPRLTHLETSITRHKAHIMKLELILRLL 73 (773)
Q Consensus 6 EkeK~Ea~dw------L~~~IdeL~~QiE~lEaEiEkLs~----KKgKk~--~~r~e~Le~~IeRhk~HI~KLE~iLRlL 73 (773)
+..|.+..++ |.+-+..++.+...|..+++.|.. .|+.+- +..++.....++.-+.|+.+||.-++.+
T Consensus 688 ~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~ 767 (1200)
T KOG0964|consen 688 DEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYF 767 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred hC-------CCCChhhHHHHH
Q 004110 74 DN-------DELSPEQVNDVK 87 (773)
Q Consensus 74 dN-------d~LdPe~V~dIK 87 (773)
++ ++|+|++.+.++
T Consensus 768 e~el~sel~sqLt~ee~e~l~ 788 (1200)
T KOG0964|consen 768 ESELGSELFSQLTPEELERLS 788 (1200)
T ss_pred HHHHhHHHHhhcCHHHHHHHH
No 265
>PHA01794 hypothetical protein
Probab=24.63 E-value=4.4e+02 Score=26.47 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCC-CChhhHHHHHHHHHH
Q 004110 56 ITRHKAHIMKLELILRLLDNDE-LSPEQVNDVKDLLED 92 (773)
Q Consensus 56 IeRhk~HI~KLE~iLRlLdNd~-LdPe~V~dIKDDIey 92 (773)
...-+-.|.+||+.+|.|..-. -+.-|+..|||-|+.
T Consensus 91 ~~ki~kyien~EK~~~yl~~k~~~E~~Q~~a~kdl~~r 128 (134)
T PHA01794 91 RAKIKKYIENMEKSARYLKAKDDTEATQAKAIKDLIGR 128 (134)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 3344557889999999998755 345677788887754
No 266
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=24.43 E-value=3.7e+02 Score=23.92 Aligned_cols=52 Identities=29% Similarity=0.337 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 15 WLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 15 wL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLd 74 (773)
.|...|.+=..||..|-.|-|+|+.+-. .+...|.+-|-++..+|.-+.-|.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el--------~~~~~IKKLr~~~~e~e~~~~~l~ 53 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKEL--------KLNNTIKKLRAKIKELEKQIKELK 53 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777788889999999888873222 234455555555555555444444
No 267
>PHA03161 hypothetical protein; Provisional
Probab=24.34 E-value=3.3e+02 Score=27.86 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHH
Q 004110 49 LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDV 86 (773)
Q Consensus 49 ~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dI 86 (773)
..+++..+.--.--|+....-+-+|.. +|+.+|+.+
T Consensus 56 ~~~i~~~v~~l~~~I~~k~kE~~~L~~--fd~kkl~~~ 91 (150)
T PHA03161 56 QKSIEGMLQAVDLSIQEKKKELSLLKA--FDRHKLSAA 91 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHH
Confidence 345666666555556666666666665 676666554
No 268
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=24.32 E-value=1.7e+02 Score=36.97 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc----c-CCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 17 NNLVSELESQIDSFEAELEGLTVK----K-GKTR-PPRLTHLETSITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 17 ~~~IdeL~~QiE~lEaEiEkLs~K----K-gKk~-~~r~e~Le~~IeRhk~HI~KLE~iLRlLd 74 (773)
..-+..|++++++++.|++++..| + ..|. .+.+++-+..++..+--+.+|+..|..|.
T Consensus 928 ~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 928 KKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELK 991 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888876531 1 1222 23455555555555555555555554443
No 269
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=24.30 E-value=1e+02 Score=34.72 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
+..+.|++-|++|+.+++.++..+++..
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~ 269 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP 269 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3445556666666666666666666555
No 270
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=24.28 E-value=2.4e+02 Score=33.87 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHHhC
Q 004110 80 PEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 80 Pe~V~dIKDDIeyYVEsN 97 (773)
-..|.+|+++|++-...|
T Consensus 203 ~n~~q~Lleel~f~~~~h 220 (546)
T KOG0977|consen 203 QNRVQTLLEELAFLKRIH 220 (546)
T ss_pred HhHHHHHHHHHHHHHhcc
Confidence 455667777887776443
No 271
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=24.25 E-value=2.8e+02 Score=29.99 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh------CCCCChhhHHHHHHHHHHHHHhC
Q 004110 52 LETSITRHKAHIMKLELILRLLD------NDELSPEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 52 Le~~IeRhk~HI~KLE~iLRlLd------Nd~LdPe~V~dIKDDIeyYVEsN 97 (773)
++.++.|...|+-||=.||-+++ ...|+.+.|+.--.=++||++..
T Consensus 316 ~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l~~~~~~~~ 367 (378)
T PF13148_consen 316 MRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRLVEYFLEHA 367 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999 23378999998777889998764
No 272
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=24.17 E-value=1.7e+02 Score=24.10 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 12 TRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 12 a~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
-..-|...|.+|..+++.|+.+|+.|
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666655544
No 273
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.11 E-value=1.9e+02 Score=37.20 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 76 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd 76 (773)
..-+.+|-++.-+|..+.|.....+|.-..|++.+ -+|+++|..++.--.+++..||.+|+-+=..
T Consensus 225 mklmt~Lv~va~~Ls~~~~~tskQleaEr~k~r~~-rarle~Ll~~r~etqe~~d~i~~mi~~if~s 290 (1048)
T KOG2011|consen 225 MKLMTALVSVALNLSSHNDKTSKQLEAERNKSRGN-RARLESLLMLRKETQEQQDEIESMINDIFDS 290 (1048)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34567788888888888888777777555444433 3399999999999999999999999876443
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=24.08 E-value=2.4e+02 Score=28.31 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCC--ChhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 004110 14 DWLNNLVSELESQIDSFEAELEGLTVKKGKTR--PPRLTHLETSITRHKAHIMKLELILRLLDN 75 (773)
Q Consensus 14 dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~--~~r~e~Le~~IeRhk~HI~KLE~iLRlLdN 75 (773)
.|+..+...-+.++|+||+|++.-. ++ .+.+-..-.-+..|-..|..++..++.+..
T Consensus 3 ~w~~~~~~~~~~~~~~Le~elk~~~-----~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~ 61 (177)
T PF10602_consen 3 EWIEETKAKNAEELEKLEAELKDAK-----SNLGKESIRMALEDLADHYCKIGDLEEALKAYSR 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6999999999999999999985321 11 122333333455666666667666666543
No 275
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=24.07 E-value=2e+02 Score=30.13 Aligned_cols=89 Identities=18% Similarity=0.130 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc------cccCCCCCh-----hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLT------VKKGKTRPP-----RLTHLETSITRHKAHIMKLELILRLLDNDELS 79 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs------~KKgKk~~~-----r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld 79 (773)
+|+.=|+..|+.|+.....+|..|+++. .+++|++.+ |+.-++..+++---.+.+||.++--|+|-.+.
T Consensus 27 ~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~ 106 (191)
T PTZ00446 27 KAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLH 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554432 133443222 66778888899999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHhCCC
Q 004110 80 PEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 80 Pe~V~dIKDDIeyYVEsNQd 99 (773)
-+.|..+|.--+--=.-|.+
T Consensus 107 ~ev~~aLk~g~~aLK~~~k~ 126 (191)
T PTZ00446 107 KIAVNALSYAANTHKKLNNE 126 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 88888877554444344443
No 276
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=24.06 E-value=2.9e+02 Score=35.69 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHH-hhhCCCCChhhHHHHHHHHH------HHHHhCCC
Q 004110 57 TRHKAHIMKLELILR-LLDNDELSPEQVNDVKDLLE------DYVERNQD 99 (773)
Q Consensus 57 eRhk~HI~KLE~iLR-lLdNd~LdPe~V~dIKDDIe------yYVEsNQd 99 (773)
..|+-.++.||.-+. -|....+|++.|..++.-|+ .|++.++.
T Consensus 746 ~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~ 795 (1201)
T PF12128_consen 746 QEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRA 795 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345555666666554 36667899999999998887 57888876
No 277
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.05 E-value=2.5e+02 Score=31.76 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccCCCC--ChhhHHHHHHHHHHHHHHHHHHHHH
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTV-KKGKTR--PPRLTHLETSITRHKAHIMKLELIL 70 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~-KKgKk~--~~r~e~Le~~IeRhk~HI~KLE~iL 70 (773)
+|..+-..+|...+.+|...+..-.++|.. ||+.+. .+.++++++.|.+-+-.+..+|..|
T Consensus 28 eel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 28 EELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 444555566666666666666554444443 232222 3468888888888888888888554
No 278
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.05 E-value=6e+02 Score=23.82 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004110 50 THLETSITRHKAHIMKLELIL 70 (773)
Q Consensus 50 e~Le~~IeRhk~HI~KLE~iL 70 (773)
+-++..++.-+-++.+|+..+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~l 110 (129)
T cd00584 90 EFLDKKIEELTKQIEKLQKEL 110 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555333
No 279
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=24.05 E-value=61 Score=27.09 Aligned_cols=19 Identities=16% Similarity=0.538 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 004110 20 VSELESQIDSFEAELEGLT 38 (773)
Q Consensus 20 IdeL~~QiE~lEaEiEkLs 38 (773)
|..|++|++.||.++..|.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq 19 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQ 19 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 6788899999998887653
No 280
>PRK07639 acyl carrier protein; Provisional
Probab=23.92 E-value=77 Score=28.49 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccCCCCCccccchhhhh
Q 004110 84 NDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVT 127 (773)
Q Consensus 84 ~dIKDDIeyYVEsNQdDF~Ef~dde~iYD~L~Ld~~e~~e~~v~ 127 (773)
+.||+=|..+++... ..++.++..++++|+||+.+.++=.++
T Consensus 8 ~~i~~il~e~l~~~~--~~~i~~d~~l~edL~lDSld~velv~~ 49 (86)
T PRK07639 8 NAVLKIMEEKLELKN--VTHLEETMRLNEDLYIDSVMMLQLIVY 49 (86)
T ss_pred HHHHHHHHHHhCCCc--cccCCCCCCcccccCCChHHHHHHHHH
Confidence 457777777775432 236667899999999999987655543
No 281
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.88 E-value=4.1e+02 Score=25.76 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 004110 13 RDWLNNLVSELESQIDSFEAELE 35 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiE 35 (773)
.+.|+..++.|+.+++.+|.|+.
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 282
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=23.88 E-value=26 Score=43.23 Aligned_cols=75 Identities=23% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHH-HHHHHHHHHHHHHhhhCCCCChh
Q 004110 5 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITR-HKAHIMKLELILRLLDNDELSPE 81 (773)
Q Consensus 5 ~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeR-hk~HI~KLE~iLRlLdNd~LdPe 81 (773)
+|++..|-..-|..+|+=|++=|.+++.+-|.. ||..|=..-+|-|..-..| .-.-+.|+|.+|+.|+|+.-.+.
T Consensus 535 e~~~y~eK~~qLskYiePL~rmi~k~~~~~~~~--~~l~kmk~ll~iL~~p~~r~pl~tL~kce~~l~kl~~~~~~~~ 610 (799)
T PF09606_consen 535 EEQAYLEKLRQLSKYIEPLRRMINKMDKDEGRK--KDLSKMKSLLDILSNPSKRCPLETLQKCEIVLEKLKNDMGVPT 610 (799)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcccccHHHHHHHhcccCCCch--hHHHhHHHHHHHhcCCccCCchHHHHHHHHHHHHhhcccCCCC
Confidence 688888888899999999999999887663322 1111101111111111111 12346699999999999886543
No 283
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=23.78 E-value=4.1e+02 Score=24.01 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHH
Q 004110 22 ELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHK 60 (773)
Q Consensus 22 eL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk 60 (773)
+|++.++.+-.-..+...|.+.+..=.+++|+.++.+.-
T Consensus 3 ~le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~ 41 (89)
T cd05023 3 ETERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTEL 41 (89)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhh
Confidence 455555555544444333333332335688888887753
No 284
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=23.77 E-value=2.6e+02 Score=33.77 Aligned_cols=70 Identities=21% Similarity=0.314 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCC------CC-ChhhHHHHHHHHHHHH----HHHHHHHHHHhhhC
Q 004110 7 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGK------TR-PPRLTHLETSITRHKA----HIMKLELILRLLDN 75 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgK------k~-~~r~e~Le~~IeRhk~----HI~KLE~iLRlLdN 75 (773)
.....+.+||.+-|++|+++++..|.+++..-.|.+= .- ..++.+++..+..-+- -..+++.+-+.|++
T Consensus 190 ~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~ 269 (754)
T TIGR01005 190 ESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQN 269 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445678999999999999999999999876443221 11 2466666665554333 33345555555554
Q ss_pred C
Q 004110 76 D 76 (773)
Q Consensus 76 d 76 (773)
+
T Consensus 270 ~ 270 (754)
T TIGR01005 270 G 270 (754)
T ss_pred C
Confidence 3
No 285
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=23.71 E-value=6.4e+02 Score=30.39 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhHHHHHHHHH
Q 004110 51 HLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLLE 91 (773)
Q Consensus 51 ~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld-Pe~V~dIKDDIe 91 (773)
.++++.+-|+--..++..+++.|.++..+ ..++.+-|++++
T Consensus 440 ~~~el~~l~~~~~~n~~~a~~~l~~~D~~~ar~lv~~k~~~r 481 (533)
T COG1283 440 GLEELDALFALTLENLRLAISVLVTGDLELARRLVERKKRVR 481 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34444444555566666666666666655 444444444443
No 286
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=23.69 E-value=2.5e+02 Score=29.68 Aligned_cols=87 Identities=24% Similarity=0.356 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc------cCC---CC----ChhhHHHHHHHHHHHHHHHHHHHHHHhhhC--CCCChh
Q 004110 17 NNLVSELESQIDSFEAELEGLTVK------KGK---TR----PPRLTHLETSITRHKAHIMKLELILRLLDN--DELSPE 81 (773)
Q Consensus 17 ~~~IdeL~~QiE~lEaEiEkLs~K------KgK---k~----~~r~e~Le~~IeRhk~HI~KLE~iLRlLdN--d~LdPe 81 (773)
...|+.|+.+++.|+.++|.|..| |+- .+ -.|-++|...|.+-.--|.-|-.-+..|.. +.++..
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~ 123 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSE 123 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHH
Confidence 456788888888888888887531 211 11 125677777777776666665555544444 347789
Q ss_pred hHHHHHHHHHHHHHhCCC-Cccc
Q 004110 82 QVNDVKDLLEDYVERNQD-DFEE 103 (773)
Q Consensus 82 ~V~dIKDDIeyYVEsNQd-DF~E 103 (773)
++....++++.||+.=+. ||..
T Consensus 124 ~l~~~l~ea~~mL~emr~r~f~~ 146 (264)
T PF06008_consen 124 DLQRALAEAQRMLEEMRKRDFTP 146 (264)
T ss_pred HHHHHHHHHHHHHHHHHhccchh
Confidence 999999999999998776 7753
No 287
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=23.62 E-value=3.5e+02 Score=30.46 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHh
Q 004110 49 LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 96 (773)
Q Consensus 49 ~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEs 96 (773)
+++...++.|+++-..+... ..++..+-+.+.+|+++|..+.+.
T Consensus 65 lek~~el~~Rl~~L~e~~~~----~~~~~~~~~~~~~lr~~l~~~~~e 108 (310)
T KOG1161|consen 65 LEKESELIIRLKELEEKIDA----LSLEPPSAEEMKELREELVDFHGE 108 (310)
T ss_pred HHHHHHHHHHHHHHHHHhhc----cccCCcchhHHHHHHHHHHHHHHH
Confidence 34556666666666666555 667777777777787777665543
No 288
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=23.59 E-value=3.2e+02 Score=29.68 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhhhhccccC-CCC--ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHH
Q 004110 19 LVSELESQIDSFEAELEGLTVKKG-KTR--PPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY 93 (773)
Q Consensus 19 ~IdeL~~QiE~lEaEiEkLs~KKg-Kk~--~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyY 93 (773)
.+++++.+++..+++++.+..+.. ++. ..-..+++....+...-..+++..-+|++.+-++-.++++.+.+++.-
T Consensus 87 ~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a 164 (346)
T PRK10476 87 TVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDA 164 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHH
Confidence 456666677777766665432111 000 011223333344455556677777788899999999998888766543
No 289
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.47 E-value=1.7e+02 Score=27.51 Aligned_cols=16 Identities=6% Similarity=0.036 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 004110 20 VSELESQIDSFEAELE 35 (773)
Q Consensus 20 IdeL~~QiE~lEaEiE 35 (773)
+.+|++|++.+++|++
T Consensus 29 ~~~l~~q~~~~~~e~~ 44 (105)
T PRK00888 29 YWRVNDQVAAQQQTNA 44 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666666544
No 290
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=23.47 E-value=4e+02 Score=23.18 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCC
Q 004110 54 TSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 54 ~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
..-+-....+.-+|.+++.+..+. ++.....|+.=+..|++..+.
T Consensus 21 ~y~eA~~~Y~~aie~l~~~~k~e~-~~~~k~~~~~k~~eyl~RaE~ 65 (75)
T cd02678 21 NYEEALRLYQHALEYFMHALKYEK-NPKSKESIRAKCTEYLDRAEK 65 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 344455667788888888888776 787778899999999988644
No 291
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.41 E-value=7.7e+02 Score=27.33 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 004110 53 ETSITRHKAHIMKLE 67 (773)
Q Consensus 53 e~~IeRhk~HI~KLE 67 (773)
+.+.++|.++...++
T Consensus 96 ~~~~~~n~~~~~l~~ 110 (314)
T PF04111_consen 96 EYWREYNELQLELIE 110 (314)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555544444
No 292
>PRK10869 recombination and repair protein; Provisional
Probab=23.37 E-value=7.6e+02 Score=29.38 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004110 8 AKSETRDWLNNLVSELES 25 (773)
Q Consensus 8 eK~Ea~dwL~~~IdeL~~ 25 (773)
++.+-.+||+-.|+||++
T Consensus 182 ~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 182 ERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444555555555543
No 293
>PRK12704 phosphodiesterase; Provisional
Probab=23.34 E-value=2.1e+02 Score=33.74 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEG 36 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEk 36 (773)
++.........+.++++.....|+|+
T Consensus 50 eAke~~ke~~leaeeE~~~~R~Ele~ 75 (520)
T PRK12704 50 EAEAIKKEALLEAKEEIHKLRNEFEK 75 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444554554444444443
No 294
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=23.33 E-value=7.6e+02 Score=24.68 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
.+..+=+..++.++..|++.++.-|+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~l~~ai~~~~ 37 (204)
T PF04740_consen 9 HSQAESTNSSLKELKEQLESLQKAINQFI 37 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667777777777777777665
No 295
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.27 E-value=3e+02 Score=34.09 Aligned_cols=24 Identities=29% Similarity=0.334 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 15 WLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 15 wL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
=++++|+.|+++...+|.+.+.+.
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~ 540 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAE 540 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665555555544443
No 296
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.24 E-value=1.9e+02 Score=29.96 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCC
Q 004110 50 THLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 50 e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
..++..|+--+-||.+||.|+..| ++.. --.++|-|+--|+.-|+
T Consensus 42 a~~E~Hl~ET~~qi~rLe~Vfe~~-g~~~----~~~~cda~~giiaegq~ 86 (167)
T COG3685 42 AAIEKHLEETKGQIERLEQVFERL-GKKA----RRVTCDAMEGLIAEGQE 86 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-Cccc----ccchHHHHHHHHHHHHH
Confidence 344555555578999999999983 2221 12356666666666655
No 297
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=23.21 E-value=56 Score=38.09 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHhCCC-Ccccc
Q 004110 80 PEQVNDVKDLLEDYVERNQD-DFEEF 104 (773)
Q Consensus 80 Pe~V~dIKDDIeyYVEsNQd-DF~Ef 104 (773)
-+.|++.-++.-.|||+|+| +-+||
T Consensus 598 Ke~~e~av~e~~eWL~~n~~a~~Ee~ 623 (663)
T KOG0100|consen 598 KETIEDAVEEALEWLESNQDASKEEF 623 (663)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHH
Confidence 34455544445567889988 44443
No 298
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=23.15 E-value=2.4e+02 Score=26.95 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 004110 9 KSETRDWLNNLVSELE 24 (773)
Q Consensus 9 K~Ea~dwL~~~IdeL~ 24 (773)
..+++.++.+.++.++
T Consensus 39 ~ee~k~~~~e~~~~~~ 54 (118)
T TIGR01837 39 EKRGQKRFDESVDAAR 54 (118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666666665
No 299
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=23.15 E-value=5.7e+02 Score=27.00 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCC
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
++..++..| +.-=.|+.+||+||+-.. ..-+++|+-|..-|..-++
T Consensus 115 ~v~~~~q~~---~~l~~K~D~~L~llE~~~---~~~~~~~~~~~~~~~~~~~ 160 (189)
T TIGR02132 115 DVTKLKQDI---KSLDKKLDKILELLEGQQ---KTQDELKETIQKQIKTQGE 160 (189)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHhcCc---cchhHHHHHHHHHHhhhHH
Confidence 344444444 444467888999998764 4445666667666655444
No 300
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=23.08 E-value=1.2e+02 Score=30.22 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHh
Q 004110 83 VNDVKDLLEDYVER 96 (773)
Q Consensus 83 V~dIKDDIeyYVEs 96 (773)
++.+|+-|...++.
T Consensus 77 ~~~Lk~yL~~~m~~ 90 (162)
T PF05565_consen 77 IDRLKEYLLDAMEA 90 (162)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 301
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=23.01 E-value=2.5e+02 Score=26.15 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004110 9 KSETRDWLNNLVSELESQIDSFEAE 33 (773)
Q Consensus 9 K~Ea~dwL~~~IdeL~~QiE~lEaE 33 (773)
+.|+...|++-|+.|+..++.++..
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~ 89 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQ 89 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 302
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=23.00 E-value=1.5e+02 Score=26.48 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHH
Q 004110 54 TSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY 93 (773)
Q Consensus 54 ~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyY 93 (773)
+.-+|+.-||.+|...+ +.|++|++||++-
T Consensus 39 ~RE~kyq~~I~~lte~~----------~~~~~~~~dv~ei 68 (71)
T PF10960_consen 39 EREEKYQEQIEKLTEKL----------NVIEEIKEDVKEI 68 (71)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 44445555555555443 4455777777764
No 303
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=22.94 E-value=3.4e+02 Score=25.05 Aligned_cols=24 Identities=13% Similarity=0.419 Sum_probs=19.0
Q ss_pred HHHhhhCCCCChhhHHHHHHHHHH
Q 004110 69 ILRLLDNDELSPEQVNDVKDLLED 92 (773)
Q Consensus 69 iLRlLdNd~LdPe~V~dIKDDIey 92 (773)
|++++.--.|+|+++..+-..+..
T Consensus 39 Iv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 39 IVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Confidence 778888888999999887766644
No 304
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=22.94 E-value=1.3e+02 Score=26.12 Aligned_cols=24 Identities=8% Similarity=0.281 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 13 RDWLNNLVSELESQIDSFEAELEG 36 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEk 36 (773)
.-|..+.|++|+..+-....+|++
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~ 36 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDR 36 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666555555555443
No 305
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=22.67 E-value=2.7e+02 Score=31.74 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc----ccCCCCChhhHHHHHHHHH---HHHHHHHHHHHHHhhhCCCCChhhHHHHHH
Q 004110 16 LNNLVSELESQIDSFEAELEGLTV----KKGKTRPPRLTHLETSITR---HKAHIMKLELILRLLDNDELSPEQVNDVKD 88 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs~----KKgKk~~~r~e~Le~~IeR---hk~HI~KLE~iLRlLdNd~LdPe~V~dIKD 88 (773)
+.+.|+.+...++.+|.++..-.. +|-++-..++..|+..++. .+--...++.++.|++. -|++-...+.+
T Consensus 5 ~~~~~~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~--~D~e~~~~a~~ 82 (360)
T TIGR00019 5 LLEKLESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEE--SDPEMREMAKE 82 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHH
Confidence 556677777778888877754321 2211112345555555554 33344555666666643 36776667777
Q ss_pred HHHHHHHhC
Q 004110 89 LLEDYVERN 97 (773)
Q Consensus 89 DIeyYVEsN 97 (773)
+++.+.+.-
T Consensus 83 e~~~l~~~~ 91 (360)
T TIGR00019 83 ELEELEEKI 91 (360)
T ss_pred HHHHHHHHH
Confidence 776665544
No 306
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.66 E-value=2.1e+02 Score=28.78 Aligned_cols=19 Identities=11% Similarity=0.309 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 004110 47 PRLTHLETSITRHKAHIMK 65 (773)
Q Consensus 47 ~r~e~Le~~IeRhk~HI~K 65 (773)
+++++++..++..+-.+..
T Consensus 161 ~ei~~lk~el~~~~~~~~~ 179 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEA 179 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555554433333
No 307
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=22.60 E-value=2.5e+02 Score=29.87 Aligned_cols=76 Identities=29% Similarity=0.386 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHH----HHHHHHHHHHHHHHHHHHhhhCCCCChhhHH
Q 004110 9 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLE----TSITRHKAHIMKLELILRLLDNDELSPEQVN 84 (773)
Q Consensus 9 K~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le----~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~ 84 (773)
..++...++.-|.++..++..+++++++|..++..= +.++.+++ .-...|.-+|..|| .+|.
T Consensus 207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~L-e~~l~~le~~~~~~~~~~~~~i~~le-------------~el~ 272 (312)
T PF00038_consen 207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASL-ERQLRELEQRLDEEREEYQAEIAELE-------------EELA 272 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH
T ss_pred cccccchhHhHHHHHHhhhhHhhhhhhccccchhhh-hhhHHHHHHHHHHHHHHHHHhhhccc-------------hhHH
Confidence 345566777788888888888888888876433100 12333332 33344566666666 4455
Q ss_pred HHHHHHHHHHHhCC
Q 004110 85 DVKDLLEDYVERNQ 98 (773)
Q Consensus 85 dIKDDIeyYVEsNQ 98 (773)
.++.+|.-.+..++
T Consensus 273 ~l~~~~~~~~~ey~ 286 (312)
T PF00038_consen 273 ELREEMARQLREYQ 286 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554443
No 308
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=22.60 E-value=3.7e+02 Score=28.46 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 004110 50 THLETSITRHKAHIMKLELILRL 72 (773)
Q Consensus 50 e~Le~~IeRhk~HI~KLE~iLRl 72 (773)
.+..-...|+.||...|+-++.+
T Consensus 145 a~~~l~~~r~~f~~~~l~Yv~~l 167 (207)
T cd07602 145 ADAQLDMERRNFHQASLEYVFKL 167 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444778999999999999865
No 309
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=22.57 E-value=2.3e+02 Score=29.82 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhhhhccc--cCCCCChhh------H------HHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 19 LVSELESQIDSFEAELEGLTVK--KGKTRPPRL------T------HLETSITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 19 ~IdeL~~QiE~lEaEiEkLs~K--KgKk~~~r~------e------~Le~~IeRhk~HI~KLE~iLRlLd 74 (773)
+-.+++++.|+--.++|..-.| |.|++..+. + .-+-..+|..||...|+-++++-.
T Consensus 105 ~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~~~l~~~R~~F~~~~~~yv~~l~~ 174 (215)
T cd07604 105 SKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTEITGAEIAEEMEKERRMFQLQMCEYLIKVNE 174 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357888888888888776543 233332211 1 234467899999999999998743
No 310
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.55 E-value=1.4e+02 Score=28.30 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhhCCCCC-hhhHHHHHHHHHHHHHhCC
Q 004110 60 KAHIMKLELILRLLDNDELS-PEQVNDVKDLLEDYVERNQ 98 (773)
Q Consensus 60 k~HI~KLE~iLRlLdNd~Ld-Pe~V~dIKDDIeyYVEsNQ 98 (773)
.--+.+||.|++.|+++.|. -+.|..+++-++.+=.++.
T Consensus 11 Eeal~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~C~~ 50 (95)
T PRK14069 11 EDALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSG 50 (95)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999 4455557777766555543
No 311
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.38 E-value=3.2e+02 Score=25.54 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 12 TRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 12 a~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
-.+.|...|.+|+..++.++.=++.|.
T Consensus 14 ~i~~l~~~i~~l~~~i~e~~~~~~~L~ 40 (126)
T TIGR00293 14 QVESLQAQIAALRALIAELETAIETLE 40 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666555553
No 312
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=22.34 E-value=1.3e+02 Score=34.69 Aligned_cols=19 Identities=16% Similarity=0.441 Sum_probs=9.7
Q ss_pred hhhCCCCChhhHHHHHHHH
Q 004110 72 LLDNDELSPEQVNDVKDLL 90 (773)
Q Consensus 72 lLdNd~LdPe~V~dIKDDI 90 (773)
+|+|-+=+.++|-.|-|.|
T Consensus 313 F~~npKPt~qEIt~iA~~L 331 (398)
T KOG3802|consen 313 FLKNPKPTSQEITHIAESL 331 (398)
T ss_pred HHhCCCCCHHHHHHHHHHh
Confidence 4455555555555554444
No 313
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=22.31 E-value=2.6e+02 Score=29.92 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc--ccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChh
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGLTV--KKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPE 81 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkLs~--KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe 81 (773)
..||...++.|-..+|.|-.|.+++.. +...+ ...+.+.++ .-+|+|+..|..+++..-|+
T Consensus 202 ~~~le~~l~~l~~~id~l~~e~~~~~~y~r~~~~---~~~~~~~~~-----~kr~~en~~r~~~~~~~lp~ 264 (266)
T cd08065 202 NSFLEKNLELLMESVDELSQEQGKFNYYQRNLAR---QQAQIQQWL-----QKRKAENAQREARGEEPLPE 264 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-----HHHHHHhHHHHhcCCCCCCC
Confidence 356666666666777777777666542 11000 011122222 23578999999998886554
No 314
>PF13864 Enkurin: Calmodulin-binding
Probab=22.19 E-value=57 Score=29.88 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc
Q 004110 18 NLVSELESQIDSFEAELEGLTV 39 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~ 39 (773)
.+++.|....+.+..|+-+|..
T Consensus 44 ~lL~~Lk~~~~el~~ey~~lp~ 65 (98)
T PF13864_consen 44 ELLEGLKKNWDELNKEYQKLPF 65 (98)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc
Confidence 3567777777777777777654
No 315
>PHA02047 phage lambda Rz1-like protein
Probab=22.18 E-value=3.8e+02 Score=25.76 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCC
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
++|.++..|.+..-|+++||. .-+.-.+||+.=+|+|++
T Consensus 42 qLE~a~~r~~~~Q~~V~~l~~-------------kae~~t~Ei~~aL~~n~~ 80 (101)
T PHA02047 42 RLEALEVRYATLQRHVQAVEA-------------RTNTQRQEVDRALDQNRP 80 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhCCC
Confidence 344667778888888888883 355566777777777876
No 316
>PF02949 7tm_6: 7tm Odorant receptor; InterPro: IPR004117 All known members of this group are seven-transmembrane proteins that are candidate odorant receptors in Drosophila.; GO: 0004984 olfactory receptor activity, 0005549 odorant binding, 0007608 sensory perception of smell, 0016020 membrane
Probab=22.09 E-value=1.6e+02 Score=29.64 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 004110 18 NLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELI 69 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~i 69 (773)
-.+-.+..|++-+-..+|+|....++++.++.++|++.|++|...++-.+.+
T Consensus 141 ~~~~~~~~q~~iL~~~l~~l~~~~~~~~~~~~~~L~~~I~~H~~ll~~~~~l 192 (313)
T PF02949_consen 141 ILLLHICGQFDILQRRLENLFEDNSEEDEERREELKECIKRHQRLLRFVEKL 192 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhcchhhhhhhh
Confidence 3445667777888888777765433333334788999999998776544433
No 317
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=22.05 E-value=2.5e+02 Score=29.13 Aligned_cols=61 Identities=26% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHH
Q 004110 16 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 95 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVE 95 (773)
|..+...|..|+|..+.|+ +.-|++-+.-|++||.+.+.++-=+ ++...|..+|+.|-+
T Consensus 107 L~~tf~rL~~~Vd~~~~eL------------------~~eI~~L~~~i~~le~~~~~~k~Lr---nKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 107 LSSTFARLCQQVDQTKNEL------------------EDEIKQLEKEIQRLEEIQSKSKTLR---NKANWLESELERFQE 165 (171)
T ss_dssp ---HHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_pred hC
Q 004110 96 RN 97 (773)
Q Consensus 96 sN 97 (773)
.+
T Consensus 166 ~y 167 (171)
T PF04799_consen 166 QY 167 (171)
T ss_dssp HH
T ss_pred Hh
No 318
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=22.04 E-value=2e+02 Score=35.84 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccc-----CCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 18 NLVSELESQIDSFEAELEGLTVKK-----GKTR-PPRLTHLETSITRHKAHIMKLELILRLL 73 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~KK-----gKk~-~~r~e~Le~~IeRhk~HI~KLE~iLRlL 73 (773)
.-+..|+++++++|.|++++..|= ..|. ++.+++.+..++..+--+.+|+..|..|
T Consensus 811 ~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l 872 (874)
T PRK05729 811 AELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARL 872 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788888888887765321 1222 2345555666666666666666665554
No 319
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=21.97 E-value=2.5e+02 Score=29.88 Aligned_cols=17 Identities=41% Similarity=0.728 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHHhC
Q 004110 80 PEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 80 Pe~V~dIKDDIeyYVEsN 97 (773)
+|.|++||++|+ |++++
T Consensus 102 ~e~ve~~~~ev~-~fnnY 118 (214)
T PF04959_consen 102 PEKVEEVKKEVE-YFNNY 118 (214)
T ss_dssp HHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHH-HHHHH
Confidence 466677788876 55554
No 320
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=21.97 E-value=1.1e+02 Score=31.98 Aligned_cols=54 Identities=19% Similarity=0.368 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhHHHHHHHHHHHHHhC--CC-Ccccc
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLLEDYVERN--QD-DFEEF 104 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld-Pe~V~dIKDDIeyYVEsN--Qd-DF~Ef 104 (773)
|++.-...+.|-..|..+|+..+ +++... -..+.+|++.|+.++..- .+ +|-.|
T Consensus 144 R~erE~~i~krl~e~~~~l~~~i---~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~ 201 (247)
T PF06705_consen 144 REEREENILKRLEEEENRLQEKI---EKEKNTRESKLSELRSELEEVKRRREKGDEQFQNF 201 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45555556666666666666443 344443 566778999999888753 22 56543
No 321
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.91 E-value=1.2e+02 Score=31.14 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhh-CCCCChhhHHHHHHHHHHHHHhC
Q 004110 58 RHKAHIMKLELILRLLD-NDELSPEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 58 Rhk~HI~KLE~iLRlLd-Nd~LdPe~V~dIKDDIeyYVEsN 97 (773)
.+=|-..+||.+..|++ -++|++++.+.|+.+|+.-+-.+
T Consensus 77 pyPWt~~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d~ 117 (158)
T PF10083_consen 77 PYPWTENALEAANELIEEDEELSPDEKEQFKESLPDLTKDT 117 (158)
T ss_pred CCchHHHHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhcC
Confidence 35588899999999999 67799999999999999887665
No 322
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=21.80 E-value=5.5e+02 Score=22.49 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCh
Q 004110 2 KDPKEKAK-SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSP 80 (773)
Q Consensus 2 lDP~EkeK-~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdP 80 (773)
|+|+++++ ++..+=....+..+..++.....|+..+..+. +-+.++++.+-..|....--+.+.-.-..+=--+.|+|
T Consensus 42 Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~-~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ltp 120 (125)
T PF13801_consen 42 LTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAP-PPDEAAIEALLEEIREAQAELRQERLEHLLEIRAVLTP 120 (125)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-G
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q ss_pred hh
Q 004110 81 EQ 82 (773)
Q Consensus 81 e~ 82 (773)
++
T Consensus 121 eQ 122 (125)
T PF13801_consen 121 EQ 122 (125)
T ss_dssp GG
T ss_pred HH
No 323
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=21.77 E-value=3.1e+02 Score=28.65 Aligned_cols=31 Identities=6% Similarity=0.206 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhCCCCChhhHHHHHHHHHHH
Q 004110 63 IMKLELILRLLDNDELSPEQVNDVKDLLEDY 93 (773)
Q Consensus 63 I~KLE~iLRlLdNd~LdPe~V~dIKDDIeyY 93 (773)
|..=..+..+|.+..++.++|+.=-..|+.+
T Consensus 142 l~~ekely~~L~~~d~~~~~l~~ki~~iN~~ 172 (204)
T PF10368_consen 142 LELEKELYEMLKDKDTTQKQLDEKIKAINQS 172 (204)
T ss_dssp HHHHHHHHHHHTSTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 3333457789999999999998744444433
No 324
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.75 E-value=4e+02 Score=29.36 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
.+-|.+-|+++..+++.++.|++++
T Consensus 54 i~~L~~qi~~~~~k~~~~~~~i~~~ 78 (265)
T COG3883 54 IESLDNQIEEIQSKIDELQKEIDQS 78 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544
No 325
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=21.62 E-value=2.5e+02 Score=33.20 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhh-CCCCChhhHHHHHHHHHHHHHh
Q 004110 50 THLETSITRHKAHI-MKLELILRLLD-NDELSPEQVNDVKDLLEDYVER 96 (773)
Q Consensus 50 e~Le~~IeRhk~HI-~KLE~iLRlLd-Nd~LdPe~V~dIKDDIeyYVEs 96 (773)
+++..++...-.|+ .+.-.+++.++ +..|+.+..+.||+-|+.|++.
T Consensus 451 ~~i~~~~~~~~~~l~~~~~~~~~~I~~~~~l~~~~~~~L~~~i~~~~~~ 499 (502)
T PRK09281 451 EKVRRFEAELLAYLRSNHADLLEEIRETKDLSDEIEAKLKAAIEEFKKT 499 (502)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 34455555444443 23333444444 3457776666788888888765
No 326
>PRK01156 chromosome segregation protein; Provisional
Probab=21.51 E-value=3e+02 Score=33.93 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--ccCCCCChh-----hHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTV--KKGKTRPPR-----LTHLETSITRHKAHIMKLELILRLLDNDEL 78 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~--KKgKk~~~r-----~e~Le~~IeRhk~HI~KLE~iLRlLdNd~L 78 (773)
+..+.+...+++.-|.+|+.+++.++.++++|-. ++.++...+ +.+++...+.++-...+|+.+
T Consensus 464 ~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l~~~l~~~--------- 534 (895)
T PRK01156 464 EEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDI--------- 534 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred ChhhHHHHHHHHHHHHH
Q 004110 79 SPEQVNDVKDLLEDYVE 95 (773)
Q Consensus 79 dPe~V~dIKDDIeyYVE 95 (773)
-+.+.+|+++++.|.+
T Consensus 535 -~~~l~~le~~~~~~~~ 550 (895)
T PRK01156 535 -KIKINELKDKHDKYEE 550 (895)
T ss_pred -HHHHHHHHHHHHHHHH
No 327
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=21.38 E-value=2.4e+02 Score=31.44 Aligned_cols=81 Identities=15% Similarity=0.143 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHH----HHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHH
Q 004110 18 NLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETS----ITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY 93 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~----IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyY 93 (773)
+.+++|+++||.++.||=+|-.|+-+- ..++.++|.. |-....=-+.||.+..+-++..|+|+.|+.|-..|=.-
T Consensus 3 ~~L~~lR~~ID~iD~~iv~Ll~~R~~~-~~~ia~~K~~~~~~v~d~~Re~~vl~~~~~~~~~~~l~~~~~~~i~~~i~~~ 81 (374)
T PRK11199 3 AELTALRDQIDEVDKQLLELLAKRLEL-VAQVGEVKSRHGLPIYVPEREAAMLASRRAEAEALGVPPDLIEDVLRRVMRE 81 (374)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 347888888888888887664321100 0001111100 00000111223444444555678888888876665443
Q ss_pred HHhCCC
Q 004110 94 VERNQD 99 (773)
Q Consensus 94 VEsNQd 99 (773)
--..|.
T Consensus 82 s~~~q~ 87 (374)
T PRK11199 82 SYSSEN 87 (374)
T ss_pred HHHHhH
Confidence 334444
No 328
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=21.30 E-value=2.3e+02 Score=31.95 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCh
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSP 80 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdP 80 (773)
|..--|+.-|++|++++..++.|++ ....+-+|-++|-.++=-|||...||.
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~------------------~~~k~L~faqekn~LlqslLddaniD~ 226 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELE------------------ITKKDLKFAQEKNALLQSLLDDANIDS 226 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhhhcccH
Confidence 3444566666666666666666654 344555666666666666777766665
No 329
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=21.27 E-value=1.2e+02 Score=30.26 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCC
Q 004110 61 AHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 61 ~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
..+++||.-|+ .|..++++++-+|-+.|++...+
T Consensus 5 efL~~L~~~L~-----~lp~~e~~e~l~~Y~e~f~d~~~ 38 (181)
T PF08006_consen 5 EFLNELEKYLK-----KLPEEEREEILEYYEEYFDDAGE 38 (181)
T ss_pred HHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhhh
Confidence 34566666665 37789999999999999987554
No 330
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.20 E-value=3.5e+02 Score=28.08 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 004110 16 LNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkL 37 (773)
+...|.++..+.+.+..+++.+
T Consensus 25 ~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 25 LRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555443
No 331
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=21.09 E-value=8e+02 Score=29.97 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 004110 5 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK 41 (773)
Q Consensus 5 ~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KK 41 (773)
+.++...+.+||++-+.+|+.+++..|.+++..-.+.
T Consensus 261 k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 261 QAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455667899999999999999999999998775443
No 332
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=21.07 E-value=96 Score=37.00 Aligned_cols=32 Identities=31% Similarity=0.304 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKK 41 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KK 41 (773)
.|++|-|++-...|+.|+.++.-|+|||+..|
T Consensus 22 ~etldRIKdEfqflqaqyhslkleceKlA~EK 53 (705)
T KOG0639|consen 22 LETLDRIKEEFQFLQAQYHSLKLECEKLASEK 53 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 58999999999999999999999999999765
No 333
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.99 E-value=3e+02 Score=34.65 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 004110 5 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV 39 (773)
Q Consensus 5 ~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~ 39 (773)
.-++|..+|.-|++.+|+|++.+++--.|||.+-+
T Consensus 536 a~~~ke~irq~ikdqldelskE~esk~~eidi~n~ 570 (1118)
T KOG1029|consen 536 ARRKKELIRQAIKDQLDELSKETESKLNEIDIFNN 570 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34678889999999999999988888888877643
No 334
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=20.93 E-value=88 Score=31.76 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAEL 34 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEi 34 (773)
||-+.++.+|.+.-|+-|++|+|.+|--+
T Consensus 96 EK~~e~akdyfkRKve~l~kq~e~i~~i~ 124 (153)
T KOG3048|consen 96 EKDAEDAKDYFKRKVEYLTKQIEQIEGIL 124 (153)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999987653
No 335
>PF12932 Sec16: Vesicle coat trafficking protein Sec16 mid-region; InterPro: IPR024340 The yeast protein Sec16 plays a key role in the formation of coat protein II vesicles, which mediate protein transport from the endoplasmic reticulum (ER) to the Golgi apparatus []. Mammals have two isoforms of this protein - Sec16A and Sec16B. Sec16A appears to be the primary orthologue as it has the highest sequence similarity to the yeast sequence. Sec16B is involved in export of the peroxisomal membrane biogenesis factor peroxin 16 []. This entry represents the central conserved domain (CCD) of Sec16, found in all isoforms of this protein. The CCD is necessary for targeting of the protein to the ER [].; PDB: 3MZK_C.
Probab=20.92 E-value=81 Score=29.71 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004110 7 KAKSETRDWLNNLVSELESQID 28 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE 28 (773)
-+|.|+..||.+.|++|++...
T Consensus 68 tkKkdV~kwl~~~i~~~~~~~~ 89 (118)
T PF12932_consen 68 TKKKDVIKWLEEKIEELERSLP 89 (118)
T ss_dssp --HHHHHHHHHHHHHHH-----
T ss_pred CCHHHHHHHHHHHHHHhhcccc
Confidence 4789999999999999988764
No 336
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=20.85 E-value=1.3e+02 Score=26.07 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=29.0
Q ss_pred HHHHHHHH----HHHHHHHhhhCCCCChhhHH-HHHHHHHHHHHhCCCCccccccccccccCCC
Q 004110 57 TRHKAHIM----KLELILRLLDNDELSPEQVN-DVKDLLEDYVERNQDDFEEFSDVDELYHLLP 115 (773)
Q Consensus 57 eRhk~HI~----KLE~iLRlLdNd~LdPe~V~-dIKDDIeyYVEsNQdDF~Ef~dde~iYD~L~ 115 (773)
+||+-|++ .||.++..|+++ ++.+-|- +|++-+++.=+=-++ .. .|++.|.+|
T Consensus 12 ~Rq~~~L~~a~~~l~~a~~~l~~~-~~~dl~a~~L~~A~~~L~~ItG~--~~---~ediLd~IF 69 (73)
T PF12631_consen 12 ARQRQLLEQALEHLEDALEALENG-LPLDLVAEDLREALESLGEITGE--VV---TEDILDNIF 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHCTS--S-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHhCC--CC---hHHHHHHHH
Confidence 46666654 366777777777 5555544 466666665554554 11 466666553
No 337
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=20.83 E-value=3.7e+02 Score=27.69 Aligned_cols=45 Identities=20% Similarity=0.387 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC-----ChhhHHHHHHHHHH
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDEL-----SPEQVNDVKDLLED 92 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~L-----dPe~V~dIKDDIey 92 (773)
.+..+++.++|-+..|+.|+.+..++.++-. .+++++-|-|+|+.
T Consensus 73 ~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~e 122 (157)
T COG3352 73 QLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEE 122 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHH
Confidence 3567788888888899999999999988863 24444443444433
No 338
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.80 E-value=1.6e+02 Score=26.40 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhCCCCCh-hhHHHHHHHHHHH
Q 004110 59 HKAHIMKLELILRLLDNDELSP-EQVNDVKDLLEDY 93 (773)
Q Consensus 59 hk~HI~KLE~iLRlLdNd~LdP-e~V~dIKDDIeyY 93 (773)
..--+.+||.|++.|+++.|.- +.+..+++-++.+
T Consensus 8 fEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~ 43 (75)
T PRK14064 8 FEEAIAELETIVEALENGSASLEDSLDMYQKGIELT 43 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 3445678999999999999984 4444455555443
No 339
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.77 E-value=6.3e+02 Score=30.26 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=22.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 43 KTRPPRLTHLETSITRHKAHIMKLELILRLL 73 (773)
Q Consensus 43 Kk~~~r~e~Le~~IeRhk~HI~KLE~iLRlL 73 (773)
+.+..+..|+++.+.+-..||.||=.||+.+
T Consensus 458 ~iD~~~~~e~~e~lt~~~e~l~~Lv~Ilk~d 488 (508)
T KOG3091|consen 458 WIDFDKLIEMKEHLTQEQEALTKLVNILKGD 488 (508)
T ss_pred eechhhhHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445567777778888778888888887654
No 340
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.77 E-value=1.3e+02 Score=26.76 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhCCCCChh-hHHHHHHHHH
Q 004110 64 MKLELILRLLDNDELSPE-QVNDVKDLLE 91 (773)
Q Consensus 64 ~KLE~iLRlLdNd~LdPe-~V~dIKDDIe 91 (773)
.+||.|++.|+++.|+-+ .+..+++-++
T Consensus 2 ~~LEeIV~~LE~gel~Leesl~lyeeG~~ 30 (69)
T PRK14070 2 KELEEIVNRLENEDLPLEESIKLFERGVE 30 (69)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 578889999999988843 3444444443
No 341
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.59 E-value=8.9e+02 Score=27.00 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHH
Q 004110 49 LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY 93 (773)
Q Consensus 49 ~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyY 93 (773)
|++.+..+..-+--|..+|.++ -.+...+..+|..||+-++.+
T Consensus 241 I~~~~~~k~e~~~~I~~ae~~~--~~~r~~t~~Ei~~Lk~~~~~L 283 (312)
T smart00787 241 IEDLTNKKSELNTEIAEAEKKL--EQCRGFTFKEIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHH
Confidence 3344444444444444444432 234567788888888777654
No 342
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=20.57 E-value=2.4e+02 Score=27.07 Aligned_cols=78 Identities=22% Similarity=0.204 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhhhccccCCC-CChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CC--hhhHHHHHHHHHHHHHh
Q 004110 21 SELESQIDSFEAELEGLTVKKGKT-RPPRLTHLETSITRHKAHIMKLELILRLLDNDE-LS--PEQVNDVKDLLEDYVER 96 (773)
Q Consensus 21 deL~~QiE~lEaEiEkLs~KKgKk-~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~-Ld--Pe~V~dIKDDIeyYVEs 96 (773)
++|+.++-.+.+|+|.+-.+-.|. ...+...++.++..-=-=+..||.++....++. +. .+-+..|.+.+..-++.
T Consensus 2 ~~~~~~~~r~~ae~~N~rkr~~~e~~~~~~~~~~~~~~~ll~v~D~le~a~~~~~~~~~~~~~~~g~~~i~~~l~~~L~~ 81 (137)
T cd00446 2 EELKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLLPVLDNLERALEAAKKEEELKNLVEGVEMTLKQLLDVLEK 81 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776553211111 122455666667666677888888888877652 21 35556778888888887
Q ss_pred CC
Q 004110 97 NQ 98 (773)
Q Consensus 97 NQ 98 (773)
++
T Consensus 82 ~G 83 (137)
T cd00446 82 HG 83 (137)
T ss_pred CC
Confidence 75
No 343
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.54 E-value=2.1e+02 Score=32.30 Aligned_cols=85 Identities=27% Similarity=0.482 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhccccCCCCCh---hhHHHHHHHHHHHHHHHHHHHHH
Q 004110 1 MKDPKEKAKSETRDWLNNLVSELESQIDSFE-------AELEGLTVKKGKTRPP---RLTHLETSITRHKAHIMKLELIL 70 (773)
Q Consensus 1 ~lDP~EkeK~Ea~dwL~~~IdeL~~QiE~lE-------aEiEkLs~KKgKk~~~---r~e~Le~~IeRhk~HI~KLE~iL 70 (773)
+.+-.++-..+..+ |...+.+|+..++.+. .+++.+..+.+..... |+++++..|......+..++..+
T Consensus 89 ~~e~~ek~~k~l~e-l~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~ 167 (370)
T PF02994_consen 89 LKEEKEKSIKELNE-LKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAI 167 (370)
T ss_dssp ------------------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHH
Q ss_pred HhhhCCCCChhhHHHHHHHHHH
Q 004110 71 RLLDNDELSPEQVNDVKDLLED 92 (773)
Q Consensus 71 RlLdNd~LdPe~V~dIKDDIey 92 (773)
.-+. ..|..+++.|++
T Consensus 168 ~~~~------k~i~~l~~kl~D 183 (370)
T PF02994_consen 168 KELE------KRIKKLEDKLDD 183 (370)
T ss_dssp HHHH------HHHHHHHHHHHH
T ss_pred HHHH------HHHHHHHHHHHH
No 344
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=20.49 E-value=6.2e+02 Score=28.94 Aligned_cols=46 Identities=28% Similarity=0.457 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCC----CCChhhHHHHHHHHHH
Q 004110 47 PRLTHLETSITRHKAHIMKLELILRLLDND----ELSPEQVNDVKDLLED 92 (773)
Q Consensus 47 ~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd----~LdPe~V~dIKDDIey 92 (773)
...++|+..+.+.+-...+|+..++.+.-| +++|+++..|..-++.
T Consensus 255 ~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~grl~~~Dl~~i~~~lr~ 304 (459)
T PF10337_consen 255 KSLKKLKATKAKLRALYAKLQAALRFLKLEISYGRLSPDDLKPIFSLLRS 304 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeecCCHHHHHHHHHHHHH
Confidence 466889999999999999999999999876 5899999998876654
No 345
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=20.47 E-value=2.8e+02 Score=30.46 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEG 36 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEk 36 (773)
..+|.|-++-|+..|..|++.-+.+..|+..
T Consensus 88 ~~Kk~eLi~~l~~kl~~L~~eqe~l~ee~~~ 118 (264)
T PF08687_consen 88 NAKKVELIESLSKKLEVLQEEQEALQEEIQA 118 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999888888877743
No 346
>PF10127 Nuc-transf: Predicted nucleotidyltransferase; InterPro: IPR018775 Proteins in this entry are predicted to catalyse the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.
Probab=20.46 E-value=2e+02 Score=30.02 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=36.3
Q ss_pred HHHHHHHhhhhcc-ccCCCCCh---hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHH
Q 004110 27 IDSFEAELEGLTV-KKGKTRPP---RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVND 85 (773)
Q Consensus 27 iE~lEaEiEkLs~-KKgKk~~~---r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~d 85 (773)
.+.+..+++.|-. |++..... ++.++..+|++- +..++....+++...-|.+.+++
T Consensus 184 ~~~~~~~i~~Ll~~K~~~~e~~~~~~~~~l~~~i~~~---l~~~~~~~~~~~~~~~d~~~ln~ 243 (247)
T PF10127_consen 184 DDDLREEIDELLEIKKGGDEKEEIPRIPELDDFIESE---LERAEEASKLPEKKKPDWEELNQ 243 (247)
T ss_pred chhHHHHHHHHHHHHcCCCchhhccchHHHHHHHHHH---HHHHHHhcCCCCCCCCCHHHHHH
Confidence 4667778888765 44444322 467777777665 66667777777776666666665
No 347
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.43 E-value=1.7e+02 Score=31.94 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 004110 18 NLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs 38 (773)
..|.+|+.||..|+-+||.|.
T Consensus 56 ~~~~~l~~Ql~~l~g~i~~L~ 76 (262)
T COG1729 56 YRLTQLEQQLRQLQGKIEELR 76 (262)
T ss_pred hccHHHHHHHHHHHhhHHHHH
Confidence 458889999999998888663
No 348
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=20.36 E-value=5.1e+02 Score=30.53 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=7.1
Q ss_pred CCChhhHHHHHHHHH
Q 004110 77 ELSPEQVNDVKDLLE 91 (773)
Q Consensus 77 ~LdPe~V~dIKDDIe 91 (773)
.+.+++.+.|++.|+
T Consensus 547 ~~~~~e~~~l~~~l~ 561 (595)
T TIGR02350 547 KLPAEEKEKIEKAVA 561 (595)
T ss_pred cCCHHHHHHHHHHHH
Confidence 355555554444433
No 349
>PRK13411 molecular chaperone DnaK; Provisional
Probab=20.36 E-value=8.3e+02 Score=29.51 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=12.2
Q ss_pred CCCCChhhHHHHHH---HHHHHHHh
Q 004110 75 NDELSPEQVNDVKD---LLEDYVER 96 (773)
Q Consensus 75 Nd~LdPe~V~dIKD---DIeyYVEs 96 (773)
.+.+++++-+.|++ +++.+|+.
T Consensus 549 ~~~~~~~er~~i~~~l~~~~~wL~~ 573 (653)
T PRK13411 549 GELISEELKQRAEQKVEQLEAALTD 573 (653)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHhc
Confidence 35567666555444 45555655
No 350
>COG3109 ProQ Activator of osmoprotectant transporter ProP [Signal transduction mechanisms]
Probab=20.28 E-value=81 Score=32.98 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCC-CCCChhHHhhhccCCCCCcceEEEeecCCCcHHHHHHHHHHhhcccccccc
Q 004110 651 VTPPSYPQVQAP-IVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRK 713 (773)
Q Consensus 651 ~tP~cYpq~p~P-~L~np~lfeK~Ki~kf~~ETLFYIFY~~PgD~~Ql~AA~EL~~RgWRYHKk 713 (773)
..|.||+..+-. +| ...||+.+ .+.+.+|- -=+.-|+..|-.+|-.+|||---
T Consensus 20 ~FPlcF~~egeAKPL-KiGifQDl-~e~lq~d~--------~vSktQLrqAlr~yts~wRYl~g 73 (208)
T COG3109 20 RFPLCFSLEGEAKPL-KIGIFQDL-AERLQDDE--------NVSKTQLRQALRLYTSSWRYLYG 73 (208)
T ss_pred hCccccccCccccch-hhhHHHHH-HHHHhccc--------cccHHHHHHHHHHHhcccceeee
Confidence 358899876542 22 45666641 01122221 12457999999999999999533
No 351
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.25 E-value=1.1e+02 Score=34.68 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHhhhCCCCChhhHHHHHHHHHHHHHhCCC--Ccccc
Q 004110 48 RLTHLETSITRHKAHIMKLEL-ILRLLDNDELSPEQVNDVKDLLEDYVERNQD--DFEEF 104 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~-iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd--DF~Ef 104 (773)
..+..+.+.++.+.=...|++ .+--+.+-++++++..+--|+|+||||+-.. ||..+
T Consensus 64 ~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ 123 (342)
T KOG2160|consen 64 HTEDQKDFVEDMKVISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISL 123 (342)
T ss_pred hhhhhhhhcccchhHHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhc
Confidence 345567777788887777777 4555666789999999999999999999543 77764
No 352
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=20.16 E-value=4.1e+02 Score=27.54 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 9 KSETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 9 K~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
...+.+|.+.|+.+|..|++.|+..+.+..
T Consensus 42 ~~qa~~y~~~~~~elR~qv~~l~~~l~~v~ 71 (208)
T PF14644_consen 42 QEQADEYHNSCLQELRNQVERLEELLPKVP 71 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345889999999999999999999988864
No 353
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=20.06 E-value=3.2e+02 Score=26.51 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
++=|.+.+..|...++.++..+++|
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL 78 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERL 78 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444445555555555555444
No 354
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.03 E-value=3.8e+02 Score=24.69 Aligned_cols=17 Identities=12% Similarity=0.444 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 004110 18 NLVSELESQIDSFEAEL 34 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEi 34 (773)
+.++-|++.++.++.++
T Consensus 87 eA~~~l~~r~~~l~~~~ 103 (129)
T cd00890 87 EAIEFLKKRLETLEKQI 103 (129)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 355
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.02 E-value=2.7e+02 Score=27.33 Aligned_cols=25 Identities=8% Similarity=0.310 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhC
Q 004110 51 HLETSITRHKAHIMKLELILRLLDN 75 (773)
Q Consensus 51 ~Le~~IeRhk~HI~KLE~iLRlLdN 75 (773)
+++..+++-+-..++|+.+||.+.+
T Consensus 119 el~~~v~e~e~ll~~v~~~i~~ia~ 143 (144)
T PF11221_consen 119 ELQEAVKEAEELLKQVQELIREIAR 143 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566666666666666666544
Done!