Query 004110
Match_columns 773
No_of_seqs 256 out of 446
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 14:35:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nr7_A DNA-binding protein H-N 79.8 5.1 0.00017 35.4 7.3 38 48-85 43-80 (86)
2 2gd5_A Charged multivesicular 73.6 7.7 0.00026 37.4 7.4 95 2-97 6-133 (179)
3 2gyq_A YCFI, putative structur 71.6 13 0.00044 36.2 8.4 54 46-99 45-100 (173)
4 2p2u_A HOST-nuclease inhibitor 69.9 17 0.00059 35.2 8.9 67 11-104 16-83 (171)
5 3tnu_B Keratin, type II cytosk 67.2 4.8 0.00017 37.1 4.2 69 17-99 35-107 (129)
6 3ghg_C Fibrinogen gamma chain; 66.4 12 0.00041 41.2 7.7 46 48-99 92-137 (411)
7 3htk_A Structural maintenance 60.4 27 0.00094 27.8 6.9 55 18-93 5-59 (60)
8 3tnu_A Keratin, type I cytoske 59.6 4.9 0.00017 37.2 2.7 69 17-99 37-109 (131)
9 1m1j_C Fibrinogen gamma chain; 59.5 17 0.0006 39.8 7.4 46 48-99 92-137 (409)
10 2gs4_A Protein YCIF; stress pr 58.8 29 0.00097 33.5 8.0 52 45-96 37-91 (166)
11 4ev6_A Magnesium transport pro 58.5 42 0.0014 34.8 9.9 77 15-96 168-252 (339)
12 1i6z_A BAG-family molecular ch 58.4 60 0.0021 31.0 9.9 78 2-81 12-90 (135)
13 3nvo_A Zinc transport protein 58.2 60 0.0021 31.9 10.5 61 13-77 157-217 (264)
14 3s4r_A Vimentin; alpha-helix, 56.7 15 0.0005 32.6 5.1 23 18-40 23-45 (93)
15 3m91_B Prokaryotic ubiquitin-l 55.5 7.3 0.00025 30.9 2.6 23 80-102 13-35 (44)
16 3uul_A Utrophin; spectrin repe 55.3 93 0.0032 26.3 10.0 43 51-93 47-90 (118)
17 2hn1_A CORA, magnesium and cob 54.9 49 0.0017 32.7 9.3 60 13-76 182-241 (266)
18 3onj_A T-snare VTI1; helix, HA 54.8 41 0.0014 29.7 7.8 64 8-76 31-95 (97)
19 3ghg_A Fibrinogen alpha chain; 54.3 24 0.00083 40.1 7.5 61 48-114 118-181 (562)
20 3zbh_A ESXA; unknown function, 54.1 33 0.0011 28.5 6.8 36 2-39 9-44 (99)
21 1vcs_A Vesicle transport throu 53.9 50 0.0017 29.4 8.2 61 9-76 36-96 (102)
22 3fse_A Two-domain protein cont 53.8 17 0.00059 39.0 6.2 58 11-74 210-267 (365)
23 3uun_A Dystrophin; triple heli 53.2 1E+02 0.0035 25.9 10.5 44 50-93 46-90 (119)
24 2iub_A CORA, divalent cation t 52.9 78 0.0027 33.2 10.9 58 14-76 191-250 (363)
25 1fxk_C Protein (prefoldin); ar 52.3 18 0.0006 32.9 5.1 31 7-37 84-114 (133)
26 2jee_A YIIU; FTSZ, septum, coi 52.0 40 0.0014 29.7 7.0 64 7-74 16-79 (81)
27 3trt_A Vimentin; cytoskeleton, 50.5 87 0.003 26.0 8.7 51 6-71 23-73 (77)
28 1wmi_B RELB, hypothetical prot 50.3 7.5 0.00025 32.8 2.1 39 51-89 8-47 (67)
29 1deq_A Fibrinogen (alpha chain 49.6 33 0.0011 37.7 7.4 43 48-96 121-163 (390)
30 3gwk_C SAG1039, putative uncha 48.9 97 0.0033 25.9 8.9 41 2-44 8-49 (98)
31 3mq9_A Bone marrow stromal ant 48.6 24 0.00082 37.7 6.3 66 6-71 392-467 (471)
32 2wt7_A Proto-oncogene protein 48.1 38 0.0013 27.8 6.0 18 17-34 22-39 (63)
33 1deq_A Fibrinogen (alpha chain 47.6 65 0.0022 35.4 9.3 26 47-72 134-159 (390)
34 1lrz_A FEMA, factor essential 47.6 19 0.00063 38.6 5.2 49 17-65 246-299 (426)
35 2ke4_A CDC42-interacting prote 46.2 53 0.0018 29.5 7.1 61 15-75 19-90 (98)
36 1ik9_A DNA repair protein XRCC 44.2 76 0.0026 31.9 8.7 29 10-38 124-152 (213)
37 4ioe_A Secreted protein ESXB; 44.1 52 0.0018 27.2 6.4 35 2-38 9-43 (93)
38 1deb_A APC protein, adenomatou 43.6 43 0.0015 27.4 5.4 34 20-68 5-38 (54)
39 3ck6_A Putative membrane trans 42.8 87 0.003 30.6 8.8 58 18-77 144-201 (252)
40 4dci_A Uncharacterized protein 41.9 50 0.0017 31.9 6.7 33 6-38 24-56 (150)
41 1gk4_A Vimentin; intermediate 41.8 55 0.0019 28.2 6.3 19 53-71 25-43 (84)
42 1t2k_D Cyclic-AMP-dependent tr 41.5 1.2E+02 0.004 24.5 7.9 45 11-70 15-59 (61)
43 3m3w_A Pacsin3, protein kinase 41.5 15 0.00051 38.0 3.2 84 10-99 200-290 (320)
44 1gmj_A ATPase inhibitor; coile 41.2 1.1E+02 0.0037 27.2 8.1 20 49-68 60-79 (84)
45 1go4_E MAD1 (mitotic arrest de 41.0 18 0.00063 32.9 3.3 25 51-75 72-96 (100)
46 2zdi_C Prefoldin subunit alpha 40.7 29 0.001 32.4 4.8 31 7-37 94-124 (151)
47 4egw_A Magnesium transport pro 39.9 1.5E+02 0.0051 29.6 10.2 79 13-95 166-251 (280)
48 3i00_A HIP-I, huntingtin-inter 39.3 60 0.0021 30.2 6.5 42 18-70 15-56 (120)
49 2yo3_A General control protein 38.7 40 0.0014 35.4 5.8 55 10-72 208-262 (268)
50 3ghg_A Fibrinogen alpha chain; 38.6 70 0.0024 36.5 8.1 42 22-71 114-155 (562)
51 3rmi_A Chorismate mutase prote 38.0 1.3E+02 0.0045 27.2 8.5 21 18-38 12-32 (114)
52 3oja_B Anopheles plasmodium-re 37.5 36 0.0012 37.1 5.6 47 49-101 539-585 (597)
53 1jnm_A Proto-oncogene C-JUN; B 37.2 35 0.0012 27.8 4.1 29 9-37 20-48 (62)
54 3haj_A Human pacsin2 F-BAR; pa 37.0 43 0.0015 36.6 6.1 15 85-99 278-292 (486)
55 4etp_A Kinesin-like protein KA 36.8 37 0.0013 36.8 5.5 39 50-94 27-65 (403)
56 3iot_A Maltose-binding protein 36.7 9.4 0.00032 40.1 0.8 13 411-423 378-390 (449)
57 4abm_A Charged multivesicular 36.4 79 0.0027 27.3 6.4 60 11-70 6-75 (79)
58 2w6b_A RHO guanine nucleotide 36.0 1.2E+02 0.004 25.2 6.9 43 16-73 8-50 (56)
59 1l8d_A DNA double-strand break 35.9 1.4E+02 0.0047 26.1 8.1 22 53-74 63-84 (112)
60 3thf_A Protein shroom; coiled- 35.7 71 0.0024 32.1 6.8 30 6-35 14-43 (190)
61 3lof_A Heat shock 70 kDa prote 35.5 1.6E+02 0.0053 25.9 8.4 24 5-28 3-26 (113)
62 2bbh_A Divalent cation transpo 35.3 65 0.0022 31.7 6.6 59 14-75 182-240 (269)
63 2qyw_A Vesicle transport throu 35.0 1.2E+02 0.0041 27.0 7.6 51 10-67 48-98 (102)
64 2dq0_A Seryl-tRNA synthetase; 34.1 89 0.003 34.4 8.0 62 22-96 42-105 (455)
65 2dq3_A Seryl-tRNA synthetase; 33.5 72 0.0025 34.7 7.1 47 21-67 40-88 (425)
66 2lw1_A ABC transporter ATP-bin 32.5 42 0.0014 29.0 4.1 18 20-37 24-41 (89)
67 2kkm_A Translation machinery-a 31.2 1E+02 0.0035 29.2 6.9 45 9-58 47-91 (144)
68 4fz4_A 0197-18KD, uncharacteri 31.1 85 0.0029 30.6 6.3 60 13-74 6-90 (154)
69 2cpt_A SKD1 protein, vacuolar 31.0 1.9E+02 0.0066 26.3 8.4 46 54-99 33-78 (117)
70 2dgc_A Protein (GCN4); basic d 30.7 65 0.0022 26.7 4.8 28 10-37 29-56 (63)
71 1zbt_A RF-1, peptide chain rel 30.6 1.2E+02 0.004 33.2 8.0 80 18-97 17-103 (371)
72 3oja_B Anopheles plasmodium-re 30.4 1.7E+02 0.0059 31.8 9.5 21 16-36 468-488 (597)
73 3he5_B Synzip2; heterodimeric 30.3 1.7E+02 0.0058 23.3 6.7 41 14-69 6-46 (52)
74 2p32_A Heat shock 70 kDa prote 30.2 1E+02 0.0036 27.5 6.5 22 7-28 14-35 (120)
75 1a93_B MAX protein, coiled coi 30.2 32 0.0011 26.1 2.5 22 16-37 12-33 (34)
76 1m1j_A Fibrinogen alpha subuni 30.1 1.5E+02 0.0052 33.4 8.9 97 12-114 59-182 (491)
77 2wt7_A Proto-oncogene protein 30.1 2.2E+02 0.0077 23.1 8.1 31 8-38 20-50 (63)
78 3fx7_A Putative uncharacterize 29.4 82 0.0028 28.5 5.5 36 1-38 5-40 (94)
79 3sjb_C Golgi to ER traffic pro 29.0 39 0.0013 30.5 3.3 15 23-37 54-68 (93)
80 2dfs_A Myosin-5A; myosin-V, in 28.8 1.3E+02 0.0043 36.8 8.7 14 54-67 1023-1036(1080)
81 2zqm_A Prefoldin beta subunit 28.5 1.5E+02 0.0051 25.9 7.1 27 9-35 68-94 (117)
82 3hiu_A Uncharacterized protein 28.4 1.4E+02 0.0047 29.0 7.3 33 45-77 35-67 (166)
83 3lay_A Zinc resistance-associa 28.4 3.3E+02 0.011 26.6 10.1 52 2-54 68-120 (175)
84 3gp4_A Transcriptional regulat 28.0 1.7E+02 0.006 27.0 7.8 23 51-73 85-107 (142)
85 2yy0_A C-MYC-binding protein; 27.8 38 0.0013 27.4 2.8 11 11-21 2-12 (53)
86 2v71_A Nuclear distribution pr 27.6 74 0.0025 31.8 5.4 49 49-97 97-146 (189)
87 1x8y_A Lamin A/C; structural p 27.3 51 0.0017 28.6 3.7 12 56-67 30-41 (86)
88 3trt_A Vimentin; cytoskeleton, 27.2 61 0.0021 27.0 4.1 26 12-37 50-75 (77)
89 3iv1_A Tumor susceptibility ge 27.0 54 0.0018 28.7 3.8 46 22-73 15-65 (78)
90 3na7_A HP0958; flagellar bioge 26.9 2.6E+02 0.0088 28.1 9.4 28 11-38 46-73 (256)
91 2q9q_C DNA replication complex 26.8 4E+02 0.014 25.9 10.5 22 76-97 104-128 (196)
92 2vs0_A Virulence factor ESXA; 26.8 2.6E+02 0.0089 22.8 9.2 36 2-39 6-41 (97)
93 3uux_B Mitochondrial division 26.4 34 0.0012 35.5 2.8 71 21-92 152-223 (242)
94 4etr_A Putative uncharacterize 26.1 2.3E+02 0.0077 26.3 8.2 60 10-75 10-69 (153)
95 2pms_C Pneumococcal surface pr 26.0 1.8E+02 0.0061 27.5 7.3 75 16-90 11-105 (125)
96 1fzc_B Fibrin; blood coagulati 25.8 20 0.00069 38.2 1.1 54 18-74 4-57 (328)
97 2j69_A Bacterial dynamin-like 25.4 1.7E+02 0.006 33.5 8.7 17 81-97 395-411 (695)
98 3efg_A Protein SLYX homolog; x 25.0 1.9E+02 0.0067 24.8 6.9 30 48-77 29-58 (78)
99 4fla_A Regulation of nuclear P 24.8 4.6E+02 0.016 25.1 10.1 70 16-96 77-146 (152)
100 4eve_A Neutrophil-activating p 24.6 2.7E+02 0.0092 26.2 8.5 48 47-94 107-156 (164)
101 2d8d_A Aroag, phospho-2-dehydr 23.9 90 0.0031 26.6 4.7 20 19-38 4-23 (90)
102 3qne_A Seryl-tRNA synthetase, 23.9 1.4E+02 0.0047 33.5 7.3 62 22-96 44-107 (485)
103 3swf_A CGMP-gated cation chann 23.8 2.3E+02 0.0079 24.7 7.0 23 50-72 28-50 (74)
104 3t98_B Nucleoporin NUP58/NUP45 23.7 1.4E+02 0.0048 26.6 6.0 23 14-36 8-30 (93)
105 3aco_A Pacsin2, protein kinase 23.6 4.1E+02 0.014 27.3 10.4 15 85-99 285-299 (350)
106 1vp7_A Exodeoxyribonuclease VI 23.6 82 0.0028 28.6 4.4 38 60-97 33-71 (100)
107 1ecm_A Endo-oxabicyclic transi 23.6 2.5E+02 0.0086 24.6 7.6 70 20-90 7-80 (109)
108 1c1g_A Tropomyosin; contractIl 23.2 2.4E+02 0.0082 26.1 7.8 26 13-38 8-33 (284)
109 2fzt_A Hypothetical protein TM 23.2 74 0.0025 27.9 3.9 54 20-73 4-63 (79)
110 3okq_A BUD site selection prot 23.2 1.7E+02 0.0059 28.1 6.8 16 80-95 106-121 (141)
111 3u06_A Protein claret segregat 23.0 1.5E+02 0.005 32.4 7.1 59 14-93 6-64 (412)
112 3vkg_A Dynein heavy chain, cyt 22.9 1.5E+02 0.0051 40.5 8.4 22 17-38 2034-2055(3245)
113 2j69_A Bacterial dynamin-like 22.9 1.6E+02 0.0054 33.8 7.7 25 17-41 629-653 (695)
114 2v0o_A FCHO2, FCH domain only 22.8 2.4E+02 0.0083 27.5 8.1 15 85-99 248-262 (276)
115 3m9d_G Prokaryotic ubiquitin-l 22.7 12 0.00041 32.0 -1.0 24 80-103 37-60 (68)
116 1i84_S Smooth muscle myosin he 22.6 2.1E+02 0.0072 34.9 9.1 22 16-37 876-897 (1184)
117 1m1j_B Fibrinogen beta chain; 22.5 1.1E+02 0.0039 34.1 6.3 84 11-95 86-182 (464)
118 1dip_A Delta-sleep-inducing pe 22.5 32 0.0011 30.0 1.5 25 10-34 14-38 (78)
119 1hlo_A Protein (transcription 21.9 99 0.0034 26.1 4.4 29 9-37 48-76 (80)
120 2zqm_A Prefoldin beta subunit 21.9 3.9E+02 0.013 23.1 11.6 36 2-37 4-39 (117)
121 2x3v_A Syndapin I, protein kin 21.9 3E+02 0.01 27.9 8.9 15 85-99 276-290 (337)
122 1ses_A Seryl-tRNA synthetase; 21.9 3.1E+02 0.011 29.8 9.4 63 21-96 38-100 (421)
123 2xdj_A Uncharacterized protein 21.7 4E+02 0.014 23.2 9.0 38 16-68 18-55 (83)
124 2p22_A Suppressor protein STP2 21.6 2.6E+02 0.009 27.5 7.9 23 7-29 8-30 (174)
125 2wb7_A PT26-6P; extra chromoso 21.2 1.5E+02 0.0053 33.7 6.9 72 8-90 407-478 (526)
126 3abh_A Pacsin2, protein kinase 21.2 4.7E+02 0.016 26.2 10.1 15 85-99 285-299 (312)
127 2efl_A Formin-binding protein 21.2 1.4E+02 0.005 29.4 6.2 17 85-101 265-281 (305)
128 1ci6_A Transcription factor AT 21.2 1.2E+02 0.0043 24.8 4.8 25 13-37 25-49 (63)
129 1lwu_C Fibrinogen gamma chain; 21.0 66 0.0023 34.3 3.8 45 48-98 13-57 (323)
130 3q8t_A Beclin-1; autophagy, AT 20.7 4.4E+02 0.015 23.3 8.6 51 16-69 23-73 (96)
131 4i0x_A ESAT-6-like protein MAB 20.7 1.9E+02 0.0064 24.5 6.0 58 4-67 2-60 (94)
132 3i2w_A Syndapin, LD46328P; EFC 20.7 3.4E+02 0.012 26.9 8.8 14 86-99 264-277 (290)
133 3ogh_B Protein YCIE; iron-bind 20.7 2.2E+02 0.0077 27.7 7.2 33 44-76 37-69 (171)
134 3na7_A HP0958; flagellar bioge 20.6 3.2E+02 0.011 27.4 8.6 12 80-91 89-100 (256)
135 3a8n_A TIAM-1, T-lymphoma inva 20.6 1.1E+02 0.0038 31.8 5.4 74 11-85 135-218 (279)
136 2lw1_A ABC transporter ATP-bin 20.5 2E+02 0.007 24.7 6.2 22 49-70 24-45 (89)
137 3gpv_A Transcriptional regulat 20.3 1.7E+02 0.0059 27.1 6.1 12 5-16 58-69 (148)
138 3mud_A DNA repair protein XRCC 20.1 2.3E+02 0.0079 28.1 7.2 22 52-73 151-172 (175)
No 1
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=79.79 E-value=5.1 Score=35.42 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHH
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVND 85 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~d 85 (773)
|.++.+....-.+-+..||+.++.+|..+.|||+++-.
T Consensus 43 Rree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~eeL~~ 80 (86)
T 3nr7_A 43 RREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 33444455566677899999999999999999998753
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=73.58 E-value=7.7 Score=37.43 Aligned_cols=95 Identities=18% Similarity=0.190 Sum_probs=59.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------ccCCCCCh--------hhHHHHHHHHHHHHHHHHHH
Q 004110 2 KDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV------KKGKTRPP--------RLTHLETSITRHKAHIMKLE 67 (773)
Q Consensus 2 lDP~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~------KKgKk~~~--------r~e~Le~~IeRhk~HI~KLE 67 (773)
.||+|+- +++..=|+..+.+|.+++.+||.+-.++.. |||.+... |+.+....+-+-+.|+..++
T Consensus 6 ~~p~e~l-r~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~ 84 (179)
T 2gd5_A 6 KPPKELV-NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVL 84 (179)
T ss_dssp --CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677664 677777999999999999999999877642 33322211 22222333333445555444
Q ss_pred HHHH-------hhh------------CCCCChhhHHHHHHHHHHHHHhC
Q 004110 68 LILR-------LLD------------NDELSPEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 68 ~iLR-------lLd------------Nd~LdPe~V~dIKDDIeyYVEsN 97 (773)
.-|. +.+ |..++.++|..+-++++.-++.-
T Consensus 85 ~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~ 133 (179)
T 2gd5_A 85 MGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKA 133 (179)
T ss_dssp HHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4222 222 77889999999999998777765
No 3
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=71.64 E-value=13 Score=36.20 Aligned_cols=54 Identities=9% Similarity=0.179 Sum_probs=38.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CChhhHHHHHHHHHHHHHhCCC
Q 004110 46 PPRLTHLETSITRHKAHIMKLELILRLLDNDE--LSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 46 ~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~--LdPe~V~dIKDDIeyYVEsNQd 99 (773)
++=++.|+..++-++-||.+||.|++.|.-.- +.=+-+.-|-...+-.++...+
T Consensus 45 p~Lk~~l~~H~~eT~~qi~rLe~i~~~lg~~~~~~~c~am~gli~e~~~~~~~~~~ 100 (173)
T 2gyq_A 45 RDLSQGLTSHLEETQKQIERLDQVFKKLGQKPSGVNCPAIDGLIKEADETAGEIAD 100 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCSCCCHHHHHHHHHHHHHHHTBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHhccCC
Confidence 44456788999999999999999999998653 2225666666666666655433
No 4
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=69.95 E-value=17 Score=35.18 Aligned_cols=67 Identities=10% Similarity=0.232 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHH
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 90 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDI 90 (773)
|..+|--.-|.+|++++..++++++ +++...-++|.-.+..|. +.|..+...|
T Consensus 16 ~~~~~alr~ia~l~r~~~~i~~~~n--------------~eI~~ik~~~~~~~~~l~-------------~~i~~l~~~l 68 (171)
T 2p2u_A 16 RQAEGALAEIATIDRKVGEIEAQMN--------------EAIDAAKARASQKSAPLL-------------ARRKELEDGV 68 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Confidence 5578888889999999999999974 456666777777777776 7889999999
Q ss_pred HHHHHhCCC-Ccccc
Q 004110 91 EDYVERNQD-DFEEF 104 (773)
Q Consensus 91 eyYVEsNQd-DF~Ef 104 (773)
..|.+.|-+ +|..+
T Consensus 69 ~~y~e~~r~elf~k~ 83 (171)
T 2p2u_A 69 ATFATLNKTEMFKDR 83 (171)
T ss_dssp HHHHHHTHHHHCC--
T ss_pred HHHHHHhHHHhcCCC
Confidence 999999966 66653
No 5
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.17 E-value=4.8 Score=37.09 Aligned_cols=69 Identities=16% Similarity=0.312 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHH----HHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHH
Q 004110 17 NNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLE----TSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLED 92 (773)
Q Consensus 17 ~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le----~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIey 92 (773)
+.-|.+|+++|..|++|+++|-..|..= +..+.+.+ .-+..++..|..|| .++..+|.|+..
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~L-E~~l~e~e~~~~~~l~~~q~~i~~lE-------------~eL~~~r~e~~~ 100 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANL-QNAIADAEQRGELALKDARNKLAELE-------------EALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhHHHHHHHHHH
Confidence 4557788888999999998874222100 12232222 23444555566666 445556666666
Q ss_pred HHHhCCC
Q 004110 93 YVERNQD 99 (773)
Q Consensus 93 YVEsNQd 99 (773)
.+..+|+
T Consensus 101 ql~EYq~ 107 (129)
T 3tnu_B 101 LLREYQE 107 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 6
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=66.43 E-value=12 Score=41.23 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCC
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
++..++..|.+|.--|..|+.++...+ .+|.+|++.|....+.-++
T Consensus 92 ~~~~~~~~~~~~~~~i~~l~~~~~~~~------~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 92 EIMKYEASILTHDSSIRYLQEIYNSNN------QKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhcc
Confidence 455578889999999999999887775 5889999999988777655
No 7
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=60.38 E-value=27 Score=27.78 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHH
Q 004110 18 NLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY 93 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyY 93 (773)
+.+.+|++.++.++.+++. +..+++....+++-+...|+.+. +.|..+|..|+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~k~~~~~~~~~l~~~~----------~~I~~~k~qi~~y 59 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSL-----------KTDEFLKAKEKINEIFEKLNTIR----------DEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhc
Confidence 4455555555555555432 22345555566666666666653 6677777777776
No 8
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=59.64 E-value=4.9 Score=37.22 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHH----HHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHH
Q 004110 17 NNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLET----SITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLED 92 (773)
Q Consensus 17 ~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~----~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIey 92 (773)
+.-|.+|+++|..|++|++++-..|.. =+..+.+.+. -++.++..|..|| .++..+|.|+..
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~s-LE~~l~e~e~~~~~~l~~~q~~i~~lE-------------~eL~~~r~em~~ 102 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKAS-LENSLEETKGRYCMQLAQIQEMIGSVE-------------EQLAQLRCEMEQ 102 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH
Confidence 344667778888888888877322110 0122322222 3344555555565 455556666666
Q ss_pred HHHhCCC
Q 004110 93 YVERNQD 99 (773)
Q Consensus 93 YVEsNQd 99 (773)
.+..+|+
T Consensus 103 ql~EYq~ 109 (131)
T 3tnu_A 103 QNQEYKI 109 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 9
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=59.50 E-value=17 Score=39.85 Aligned_cols=46 Identities=15% Similarity=0.272 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCC
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
++.+|+..+.++.--|..||.+|.-++ .+|..|+..|......-..
T Consensus 92 ~~~~~e~~~~~~~~~i~~l~~~~~~~~------~~i~~l~~~i~~l~~~~~~ 137 (409)
T 1m1j_C 92 EIIRYENTILAHENTIQQLTDMHIMNS------NKITQLKQKIAQLESHCQE 137 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHhhc
Confidence 345556666677777777777776553 6788888888777665544
No 10
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=58.79 E-value=29 Score=33.54 Aligned_cols=52 Identities=4% Similarity=0.107 Sum_probs=36.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHh-hhCCC--CChhhHHHHHHHHHHHHHh
Q 004110 45 RPPRLTHLETSITRHKAHIMKLELILRL-LDNDE--LSPEQVNDVKDLLEDYVER 96 (773)
Q Consensus 45 ~~~r~e~Le~~IeRhk~HI~KLE~iLRl-LdNd~--LdPe~V~dIKDDIeyYVEs 96 (773)
+++=++.|+..++-++-||.+||.|++. |.-.- +.=+-+.-|-...+-.++.
T Consensus 37 ~p~Lk~~l~~h~~eT~~qi~rLe~i~~~~lg~~~~~~~c~am~gli~e~~~~~~~ 91 (166)
T 2gs4_A 37 NEKLSQAFHAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEGLIEEANEVIES 91 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCCCCHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHhc
Confidence 3445667899999999999999999999 87543 2225555555555555544
No 11
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=58.51 E-value=42 Score=34.81 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCCCC--ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC---Chhh---HHHH
Q 004110 15 WLNNLVSELESQIDSFEAELEGLTVKKGKTR--PPRLTHLETSITRHKAHIMKLELILRLLDNDEL---SPEQ---VNDV 86 (773)
Q Consensus 15 wL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~--~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~L---dPe~---V~dI 86 (773)
....++++|++++|.+|.++- ++.++ -.++-.++..+-+-+..+.-+..++..|.+... +.+. ++++
T Consensus 168 ~~~~~l~~l~~~i~~lE~~l~-----~~~~~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~~~~~~~~~~l~dv 242 (339)
T 4ev6_A 168 SYSRILMNLEDELEELEDKLL-----AGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPITTKEDRENFEDL 242 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHTST-----TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh-----hhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhccccccchHHHHHHHHH
Confidence 334455555555555555432 12221 236788888888888888888888888876653 3333 3455
Q ss_pred HHHHHHHHHh
Q 004110 87 KDLLEDYVER 96 (773)
Q Consensus 87 KDDIeyYVEs 96 (773)
.|++...+|.
T Consensus 243 ~~~~~~l~e~ 252 (339)
T 4ev6_A 243 YYDTLQLIDM 252 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 12
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=58.39 E-value=60 Score=31.03 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCh
Q 004110 2 KDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR-PPRLTHLETSITRHKAHIMKLELILRLLDNDELSP 80 (773)
Q Consensus 2 lDP~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~-~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdP 80 (773)
.||+|.+.--...-+...|+.+..+++.++.|++.|. ||=-. +-+.+.++..-.|.+.|...+-++|..||-=.|.+
T Consensus 12 ~~peee~~lKkL~dveksv~~~~k~l~~l~~el~~ie--kGFL~k~l~~ea~~kl~Krik~~~E~~Mk~LE~LDs~~ip~ 89 (135)
T 1i6z_A 12 SNPEEEVELKKLKDLEVSAEKIANHLQELNKELSGIQ--QGFLAKELQAEALCKLDRKVKATIEQFMKILEEIDTMVLPE 89 (135)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCS
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCc
Confidence 3677444444444556669999999999999998875 44222 23557777888899999999999999999877754
Q ss_pred h
Q 004110 81 E 81 (773)
Q Consensus 81 e 81 (773)
+
T Consensus 90 ~ 90 (135)
T 1i6z_A 90 Q 90 (135)
T ss_dssp C
T ss_pred c
Confidence 4
No 13
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=58.20 E-value=60 Score=31.90 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 77 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~ 77 (773)
.+..-.+|++|++++|.+|.++- ++.++.-.++-.|+..+-+-+..+.-+..+|..|.+..
T Consensus 157 vd~y~~~l~~l~~~id~lE~~l~----~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 217 (264)
T 3nvo_A 157 TDHASEFIEELHDKIIDLEDNLL----DQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASER 217 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC--------CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 44455566666666666666542 22233346899999999999999999999988887654
No 14
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=56.70 E-value=15 Score=32.65 Aligned_cols=23 Identities=39% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccc
Q 004110 18 NLVSELESQIDSFEAELEGLTVK 40 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~K 40 (773)
+-|..|+.|+..||++++.+..+
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45778999999999999887643
No 15
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=55.48 E-value=7.3 Score=30.89 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCcc
Q 004110 80 PEQVNDVKDLLEDYVERNQDDFE 102 (773)
Q Consensus 80 Pe~V~dIKDDIeyYVEsNQdDF~ 102 (773)
.+.+++|-|+|+.-||.|-++|+
T Consensus 13 ~~~~D~lLDeId~vLE~NAeeFV 35 (44)
T 3m91_B 13 TEETDDLLDEIDDVLEENAEDFV 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHHTC----
T ss_pred hhhHHHHHHHHHHHHHHhHHHHH
Confidence 46889999999999999999775
No 16
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=55.34 E-value=93 Score=26.31 Aligned_cols=43 Identities=12% Similarity=0.208 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhCCCCChhhHHHHHHHHHHH
Q 004110 51 HLETSITRHKAHIMKLELI-LRLLDNDELSPEQVNDVKDLLEDY 93 (773)
Q Consensus 51 ~Le~~IeRhk~HI~KLE~i-LRlLdNd~LdPe~V~dIKDDIeyY 93 (773)
.++.-|..|+-.+..|... -+|++.....+++...|++-|+.-
T Consensus 47 ~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l 90 (118)
T 3uul_A 47 TFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLL 90 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 4444555555555555333 356777778888877777766653
No 17
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=54.92 E-value=49 Score=32.73 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 76 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd 76 (773)
.+..-.+|++|++++|.+|.++- ++.++.-.++-.|+..+-+-+..+.-+..+|..|.+.
T Consensus 182 vd~y~~~l~~i~~~id~lE~~l~----~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~ 241 (266)
T 2hn1_A 182 VDSYFEALLKISDEIEVLEDEVV----SGDSTLIGKIHSLKREILAFRNAVWPLRDVLSFFTRV 241 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----TTTCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444556666666666666641 1112334589999999999999998888888666543
No 18
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=54.76 E-value=41 Score=29.66 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHH-HHHHHHhhhCC
Q 004110 8 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMK-LELILRLLDND 76 (773)
Q Consensus 8 eK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~K-LE~iLRlLdNd 76 (773)
+|..++.=+...|+|.+.-|+++|-|+-.+. ........+...|..||-.+.+ |..-|+.|-++
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~-----~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d~ 95 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSI-----GDASERATYKAKLREWKKTIQSDIKRPLQSLVDS 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4567788888999999999999999987772 0122345788888888888888 88777766543
No 19
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.32 E-value=24 Score=40.14 Aligned_cols=61 Identities=11% Similarity=0.017 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCC---CccccccccccccCC
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD---DFEEFSDVDELYHLL 114 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd---DF~Ef~dde~iYD~L 114 (773)
+++.||..|..+.-+|+.|+.+||-+ -.+|..|.-||+-=|+.=.. =..+|.=|-+-|++|
T Consensus 118 rIqyLKekVdnQlsnIrvLQsnLedq------~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~ 181 (562)
T 3ghg_A 118 RIEVLKRKVIEKVQHIQLLQKNVRAQ------LVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQ 181 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhccccccchheeecchHHHHHH
Confidence 67888888888889999999998876 46777888899988886432 112333345556655
No 20
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=54.08 E-value=33 Score=28.50 Aligned_cols=36 Identities=17% Similarity=0.083 Sum_probs=29.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 004110 2 KDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV 39 (773)
Q Consensus 2 lDP~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~ 39 (773)
+||++. +.+-.-|....++|+..++.|+..++.|..
T Consensus 9 v~~~~l--~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~ 44 (99)
T 3zbh_A 9 LTPEEL--RGVARQYNVESSNVTELIARLDQMSHTLQG 44 (99)
T ss_dssp CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578877 566777888899999999999999998853
No 21
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=53.92 E-value=50 Score=29.41 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004110 9 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 76 (773)
Q Consensus 9 K~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd 76 (773)
|..++.=+...|+|.++-|+++|.|+-.+. ......+...|..||-.+.+|..-|+.|..+
T Consensus 36 rk~~i~~ie~~l~EA~ell~qMelE~r~~p-------~~~R~~~~~klr~Yk~dL~~lk~elk~~~~~ 96 (102)
T 1vcs_A 36 KKQMVANVEKQLEEARELLEQMDLEVREIP-------PQSRGMYSNRMRSYKQEMGKLETDFKRSRIA 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-------TTTHHHHHHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566677778888888888887765552 2334467777777777777777766665544
No 22
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=53.83 E-value=17 Score=38.98 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLd 74 (773)
+...=|+..+..=.--++.+|.=.|+++..- =+..+++.+..|+.||++||.-|.-|-
T Consensus 210 ~~v~~ln~a~~ge~~~~~a~e~~a~~~~d~~------~~~~~~~i~~~~~~h~~~l~~~~~~~g 267 (365)
T 3fse_A 210 DIVRGLNTALGGERYSLEALEKYTEKESDVE------AKALFQEMITNKQRHIEYLETYLTRLG 267 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHhhcChhHHHHHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444444433333666666666664322 234899999999999999999988753
No 23
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=53.24 E-value=1e+02 Score=25.95 Aligned_cols=44 Identities=14% Similarity=0.270 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhhCCCCChhhHHHHHHHHHHH
Q 004110 50 THLETSITRHKAHIMKLELIL-RLLDNDELSPEQVNDVKDLLEDY 93 (773)
Q Consensus 50 e~Le~~IeRhk~HI~KLE~iL-RlLdNd~LdPe~V~dIKDDIeyY 93 (773)
+.++.-|..|+-.+..|...- +||+....+++....|++-|+.-
T Consensus 46 ~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l 90 (119)
T 3uun_A 46 EGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLL 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 345555666666665554443 46677778888877777766543
No 24
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=52.85 E-value=78 Score=33.19 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCC--ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004110 14 DWLNNLVSELESQIDSFEAELEGLTVKKGKTR--PPRLTHLETSITRHKAHIMKLELILRLLDND 76 (773)
Q Consensus 14 dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~--~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd 76 (773)
+..-.++++|++++|.+|.++- +..++ -.++-.|+..+-+.+..+..+..+|..|...
T Consensus 191 d~y~~~l~~l~~~id~lE~~v~-----~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~ 250 (363)
T 2iub_A 191 DDYFVLLEKIDDEIDVLEEEVL-----ERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRD 250 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-----SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555666666666665542 11111 2478889999999999999999998888654
No 25
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=52.25 E-value=18 Score=32.91 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 7 KAKSETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
+-..||.+||++-|+.|+.+++.++.+++.+
T Consensus 84 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l 114 (133)
T 1fxk_C 84 KNFEDAMESIKSQKNELESTLQKMGENLRAI 114 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999999999998887544
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=51.99 E-value=40 Score=29.69 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 7 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLd 74 (773)
+...|++.-|+--|++|++++..+..|.+.+...+ .....+.+.+-+.|.--..+|..+|..++
T Consensus 16 q~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~----~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 16 QQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQR----EELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44567777788889999999999988887764211 11122344444444445566666666554
No 27
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=50.55 E-value=87 Score=26.03 Aligned_cols=51 Identities=14% Similarity=0.293 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 71 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLR 71 (773)
.+-|.|+..|.+..+++|+.+......++. ..+.-|...+.-|..||.=|.
T Consensus 23 ~knr~EaE~~y~~k~eel~~~~~~~~~~l~---------------~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 23 AKNLQEAEEWYKSKFADLSEAANRNNDALR---------------QAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777666643 234445555555566654443
No 28
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=50.29 E-value=7.5 Score=32.82 Aligned_cols=39 Identities=26% Similarity=0.454 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCC-CChhhHHHHHHH
Q 004110 51 HLETSITRHKAHIMKLELILRLLDNDE-LSPEQVNDVKDL 89 (773)
Q Consensus 51 ~Le~~IeRhk~HI~KLE~iLRlLdNd~-LdPe~V~dIKDD 89 (773)
+.-+-++|-|-||++||-+|=-+..|+ |.-+++.+|...
T Consensus 8 ~vl~ELeRlkveiQRLE~ml~p~~~~e~v~eeEl~ei~~e 47 (67)
T 1wmi_B 8 DVLKELERLKVEIQRLEAMLMPEERDEDITEEEIAELLEL 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCBCCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHH
Confidence 345567899999999999988555555 888888887543
No 29
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=49.56 E-value=33 Score=37.68 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHh
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 96 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEs 96 (773)
+++.||..|..+=-||+.|+.+||-+ --+|..|.-||+|-+..
T Consensus 121 ~i~~lk~~V~~q~~~ir~Lq~~l~~q------~~kiqRLE~~Id~c~~~ 163 (390)
T 1deq_A 121 RIEILRRKVIEQVQRINLLQKNVRDQ------LVDMKRLEVDIDIKIRS 163 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHhcc
Confidence 56777777777777778888777766 46777788899887654
No 30
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=48.90 E-value=97 Score=25.91 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=31.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccCCC
Q 004110 2 KDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV-KKGKT 44 (773)
Q Consensus 2 lDP~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~-KKgKk 44 (773)
+||++. +.+-.-+.+..++|+..+..|+.+++.|.. =+|..
T Consensus 8 V~~e~l--~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a 49 (98)
T 3gwk_C 8 LTPEEL--RSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGST 49 (98)
T ss_dssp SCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSST
T ss_pred cCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHH
Confidence 578777 556677888889999999999999998864 34443
No 31
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=48.63 E-value=24 Score=37.72 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------c---cccCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGL-------T---VKKGKTRPPRLTHLETSITRHKAHIMKLELILR 71 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkL-------s---~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLR 71 (773)
+++.+++..+|+.-|+++++-.-.+|+.-..+ . .||......|+++|+.-|...+..|+.++--++
T Consensus 392 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 392 VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666555555543321 0 022222234777777777777666666664433
No 32
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=48.06 E-value=38 Score=27.76 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004110 17 NNLVSELESQIDSFEAEL 34 (773)
Q Consensus 17 ~~~IdeL~~QiE~lEaEi 34 (773)
...|++|+.+++.|+.+-
T Consensus 22 k~~~~~Le~~v~~L~~~n 39 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEK 39 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555553
No 33
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=47.58 E-value=65 Score=35.40 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 004110 47 PRLTHLETSITRHKAHIMKLELILRL 72 (773)
Q Consensus 47 ~r~e~Le~~IeRhk~HI~KLE~iLRl 72 (773)
.+|.-|+..|+.-+--|+|||.-++.
T Consensus 134 ~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 134 QRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37778888888888889999988744
No 34
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=47.57 E-value=19 Score=38.55 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc----c-CCCCChhhHHHHHHHHHHHHHHHH
Q 004110 17 NNLVSELESQIDSFEAELEGLTVK----K-GKTRPPRLTHLETSITRHKAHIMK 65 (773)
Q Consensus 17 ~~~IdeL~~QiE~lEaEiEkLs~K----K-gKk~~~r~e~Le~~IeRhk~HI~K 65 (773)
.+.+.+|+.++++++.++++|..| . .||...|+.+++..|+++.-.|..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 299 (426)
T 1lrz_A 246 DEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEE 299 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777766421 1 122234677777777776544443
No 35
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=46.19 E-value=53 Score=29.52 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc-cc--------C--CCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 004110 15 WLNNLVSELESQIDSFEAELEGLTV-KK--------G--KTRPPRLTHLETSITRHKAHIMKLELILRLLDN 75 (773)
Q Consensus 15 wL~~~IdeL~~QiE~lEaEiEkLs~-KK--------g--Kk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdN 75 (773)
=|...|++|+.+|++...+.|.|.. ++ | ++-..++.+....|++-+.-+.|++..|.-|++
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4888999999999999998888763 11 1 122447888888888888888888888877753
No 36
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=44.17 E-value=76 Score=31.91 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
.|..+|+-+++.+|+.++..++.|++.|.
T Consensus 124 ~elfd~~~~~~~~~~~~~~~L~~e~~~l~ 152 (213)
T 1ik9_A 124 RELIAYALDTIAENQAKNEHLQKENERLL 152 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999888888888887775
No 37
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=44.09 E-value=52 Score=27.20 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=29.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 2 KDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 2 lDP~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
+||++. +.+-.-|....++|+..+..|...++.|.
T Consensus 9 v~~e~l--~~~A~~~~~~~~~i~~~l~~L~~~~~~L~ 43 (93)
T 4ioe_A 9 ITPEEL--ERIAGNFKNAAGEAQSQINRLEGDINSLE 43 (93)
T ss_dssp CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578887 55677788899999999999999999885
No 38
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=43.60 E-value=43 Score=27.40 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 004110 20 VSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLEL 68 (773)
Q Consensus 20 IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~ 68 (773)
-|+|-+|+|.|..|- .+|+.-++.+--|+.|||.
T Consensus 5 YdQL~~QVe~Lk~EN---------------shLrrEL~dNS~~lskLE~ 38 (54)
T 1deb_A 5 YDQLLKQVEALKMEN---------------SNLRQELEDNSNHLTKLET 38 (54)
T ss_dssp HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---------------hHHHHHHHhhHHHHHHHHh
Confidence 478889999888773 3778888889999999994
No 39
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=42.81 E-value=87 Score=30.59 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004110 18 NLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 77 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~ 77 (773)
.+||..-.=+|.++.++|.|..+ ...-.++-.|+..+-+-+..+..+..+|..|.+..
T Consensus 144 ~ivd~y~~~l~~l~~~id~lE~~--~~~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~ 201 (252)
T 3ck6_A 144 GLNGKIDLYLDTIEETLNEFDVN--DESTYNHIAAQKALISIKRFIRPQQYAIRDLIESE 201 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTT--CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444444455555555555533 11234788999999999999999988887776543
No 40
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=41.91 E-value=50 Score=31.89 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
|+-|.++..-|...|..|+.|++.||.+.-++.
T Consensus 24 e~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~ 56 (150)
T 4dci_A 24 PTWKEEAEREISNGIANADQQLAQLEQEGQTVV 56 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888999999999999999999987754
No 41
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=41.80 E-value=55 Score=28.19 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004110 53 ETSITRHKAHIMKLELILR 71 (773)
Q Consensus 53 e~~IeRhk~HI~KLE~iLR 71 (773)
..-+..++..|..||.-|.
T Consensus 25 ~~~~~~~q~~i~~lE~eL~ 43 (84)
T 1gk4_A 25 AVEAANYQDTIGRLQDEIQ 43 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345566666666764333
No 42
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=41.53 E-value=1.2e+02 Score=24.52 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELIL 70 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iL 70 (773)
.|++-=+..|++|+.+++.|+.+.+ +|+..|...+-++..|..+|
T Consensus 15 k~R~rKk~~~~~Le~~~~~L~~~n~---------------~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 15 RSRQKRKVWVQSLEKKAEDLSSLNG---------------QLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHh
Confidence 3444445556667777777666644 44555555555666665544
No 43
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=41.48 E-value=15 Score=38.01 Aligned_cols=84 Identities=11% Similarity=0.121 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHH-----HHHHHhhhCCCCChhhHH
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKL-----ELILRLLDNDELSPEQVN 84 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KL-----E~iLRlLdNd~LdPe~V~ 84 (773)
.++.+=-..+|..|++..+.++.++..+-.+=-.-.+.||..|+..+..+-.|+.-. ..+.+-|. ..|+
T Consensus 200 ~~a~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~~~~~~~~~~~~~~~~~e~~~------~~i~ 273 (320)
T 3m3w_A 200 EKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQHLDLSSSDKFHELHRDLQ------QSIE 273 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHH------HHHH
Confidence 344545556678888877777777644320000011235555555555554444211 11111111 1222
Q ss_pred --HHHHHHHHHHHhCCC
Q 004110 85 --DVKDLLEDYVERNQD 99 (773)
Q Consensus 85 --dIKDDIeyYVEsNQd 99 (773)
++..||+.||+++..
T Consensus 274 ~id~~~Di~~fi~~~gt 290 (320)
T 3m3w_A 274 AASDEEDLRWWRSTHGP 290 (320)
T ss_dssp HCCHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHhcCC
Confidence 367899999999865
No 44
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=41.17 E-value=1.1e+02 Score=27.23 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 004110 49 LTHLETSITRHKAHIMKLEL 68 (773)
Q Consensus 49 ~e~Le~~IeRhk~HI~KLE~ 68 (773)
|++|+..|+||+--|.+|+.
T Consensus 60 i~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 60 IERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 44556666666666666553
No 45
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.02 E-value=18 Score=32.88 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhC
Q 004110 51 HLETSITRHKAHIMKLELILRLLDN 75 (773)
Q Consensus 51 ~Le~~IeRhk~HI~KLE~iLRlLdN 75 (773)
..+..|+.-+--|.+|-..+|.|..
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555556666655555543
No 46
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=40.74 E-value=29 Score=32.36 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 7 KAKSETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
+...||.+||++-|+.|+.+++.++.+++.+
T Consensus 94 ~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l 124 (151)
T 2zdi_C 94 RSIDEAISFLEKRLKEYDEAIKKTQGALAEL 124 (151)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999999999999887544
No 47
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=39.90 E-value=1.5e+02 Score=29.64 Aligned_cols=79 Identities=13% Similarity=0.173 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCC-CChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC---CChhh---HHH
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGLTVKKGKT-RPPRLTHLETSITRHKAHIMKLELILRLLDNDE---LSPEQ---VND 85 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk-~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~---LdPe~---V~d 85 (773)
.+..-.+|++|+.++|.+|.++-+ +.++ .-.++-.|+..+-+-+..+.-+..+|..|.+.. ++++. +.|
T Consensus 166 vd~y~~~l~~i~~~id~lE~~l~~----~~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~l~D 241 (280)
T 4egw_A 166 TRSYSRILMNLEDELEELEDKLLA----GYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPITTKEDRENFED 241 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----CCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccCCHHHHHHHHH
Confidence 344556677777777777776531 1111 123677888888888888888888888877654 34433 234
Q ss_pred HHHHHHHHHH
Q 004110 86 VKDLLEDYVE 95 (773)
Q Consensus 86 IKDDIeyYVE 95 (773)
|.|++...+|
T Consensus 242 v~dh~~~~~e 251 (280)
T 4egw_A 242 LYYDTLQLID 251 (280)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 48
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=39.27 E-value=60 Score=30.17 Aligned_cols=42 Identities=29% Similarity=0.451 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 004110 18 NLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELIL 70 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iL 70 (773)
..|+.|.+.|+.+-.|+|+|- .+-+..|...+.+|..||.-|
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~-----------~E~q~~v~ql~~~i~~Le~eL 56 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMK-----------TESQRVVLQLKGHVSELEADL 56 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888887762 345666666777777666443
No 49
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=38.72 E-value=40 Score=35.41 Aligned_cols=55 Identities=15% Similarity=0.396 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRL 72 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRl 72 (773)
.++..|-...+.+|+.+|+..+.++.++. .+++++-..|-.-...|.++.++++|
T Consensus 208 ~~an~yTd~k~~~l~n~I~~V~n~~~q~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (268)
T 2yo3_A 208 EEANTYTDQKMGEMNSKIKGVENKMKQIE--------DKIEEILSKIYHIENEIARIKKLIKL 262 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 46778888899999999999999876553 34445444444444444444444443
No 50
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.63 E-value=70 Score=36.51 Aligned_cols=42 Identities=14% Similarity=0.291 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 004110 22 ELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 71 (773)
Q Consensus 22 eL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLR 71 (773)
+|+++|+-|+.+|+.- -.+|..|+..|+.-+--|+|||.-|.
T Consensus 114 ELRRrIqyLKekVdnQ--------lsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEK--------VQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555544432 14778899999999999999997653
No 51
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=38.03 E-value=1.3e+02 Score=27.21 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 004110 18 NLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs 38 (773)
+.|++|..+||.++.+|=.|-
T Consensus 12 ~~L~~lR~~ID~ID~~il~LL 32 (114)
T 3rmi_A 12 SELAYLRQSIDNFDITLIHIL 32 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888886664
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.49 E-value=36 Score=37.15 Aligned_cols=47 Identities=6% Similarity=0.014 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCCCc
Q 004110 49 LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDF 101 (773)
Q Consensus 49 ~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQdDF 101 (773)
+++++..+++-+-++++....+..|. +++.+++.+|+.-++.=++.|
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~------~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELR------QETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHTTC---
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHH------HHHHHHHHHHHHHHHHhcCCC
Confidence 34444555555555555555555554 667777777777777655533
No 53
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.18 E-value=35 Score=27.82 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 9 KSETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 9 K~Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
|.+-++-|.+-+++|+.+++.|..+++.|
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555444
No 54
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=37.03 E-value=43 Score=36.61 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhCCC
Q 004110 85 DVKDLLEDYVERNQD 99 (773)
Q Consensus 85 dIKDDIeyYVEsNQd 99 (773)
++..||+.||++++.
T Consensus 278 d~~~Di~~Fi~~~gt 292 (486)
T 3haj_A 278 DAVEDLRWFRANHGP 292 (486)
T ss_dssp CHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHhCC
Confidence 567899999999764
No 55
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.84 E-value=37 Score=36.80 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHH
Q 004110 50 THLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYV 94 (773)
Q Consensus 50 e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYV 94 (773)
++++..+++-+....+.|.+.|.|.| +|.++|.-|.=||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~rr~l~n------~~~elkgnIrV~v 65 (403)
T 4etp_A 27 KDTELGMKELNEILIKEETVRRTLHN------ELQELRGNIRVYL 65 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHcCCCeEEEE
Confidence 34444445555555566666666643 4555555554443
No 56
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=36.67 E-value=9.4 Score=40.05 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHh
Q 004110 411 EKFLQRLQQVQQQ 423 (773)
Q Consensus 411 ~k~lq~~qqvqqq 423 (773)
+.+.|.++|.|||
T Consensus 378 ~~~~~~~~~~~~~ 390 (449)
T 3iot_A 378 MKAFESLKSFQQQ 390 (449)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHhhccc
Confidence 3444555665444
No 57
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=36.38 E-value=79 Score=27.32 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccc-CCCC-Ch------hhHHHHHHHHHHHHHHHHHHHHH
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLT--VKK-GKTR-PP------RLTHLETSITRHKAHIMKLELIL 70 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs--~KK-gKk~-~~------r~e~Le~~IeRhk~HI~KLE~iL 70 (773)
+|+.=|.+.+|.|+...+.++..||... .|+ .+++ .. |+.-.+..+++---.+.+||..+
T Consensus 6 ~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~ 75 (79)
T 4abm_A 6 EAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQR 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555432 133 1111 11 33344445555555555555544
No 58
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=36.04 E-value=1.2e+02 Score=25.23 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 16 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 73 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlL 73 (773)
|-++|=.|..|+..|..|.- .++..+|.-.---++||.++|-+
T Consensus 8 lVDtVYaLkDqV~eL~qe~k---------------~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNK---------------KMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666643 33444454555556788887765
No 59
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.94 E-value=1.4e+02 Score=26.14 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 004110 53 ETSITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 53 e~~IeRhk~HI~KLE~iLRlLd 74 (773)
...++.++-.+..|+.-|.-|.
T Consensus 63 ~~~i~~~~~~l~~l~~~i~~l~ 84 (112)
T 1l8d_A 63 EELLSKYHLDLNNSKNTLAKLI 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655444444
No 60
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=35.69 E-value=71 Score=32.05 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 6 EKAKSETRDWLNNLVSELESQIDSFEAELE 35 (773)
Q Consensus 6 EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiE 35 (773)
..+|.|-++-|+..|..|+++-+.+..|+.
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~ 43 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECS 43 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999888888774
No 61
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=35.53 E-value=1.6e+02 Score=25.88 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004110 5 KEKAKSETRDWLNNLVSELESQID 28 (773)
Q Consensus 5 ~EkeK~Ea~dwL~~~IdeL~~QiE 28 (773)
+.|++.|++.=|..+|-.++..++
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~ 26 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVE 26 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777766666654
No 62
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=35.28 E-value=65 Score=31.74 Aligned_cols=59 Identities=22% Similarity=0.279 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 004110 14 DWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 75 (773)
Q Consensus 14 dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdN 75 (773)
+..-.+|++|++++|.+|.++- .+..++.-.++-.|+..+-+-+..+.-+..+|..|.+
T Consensus 182 d~y~~~l~~i~~~id~lE~~v~---~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~ 240 (269)
T 2bbh_A 182 DDYFVLLEKIDDEIDVLEEEVL---ERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYR 240 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555555555554431 1111222357888999888888888888888776654
No 63
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=34.98 E-value=1.2e+02 Score=26.95 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLE 67 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE 67 (773)
..++.=+...|+|.++-|+++|-|+-.+. ......+...|..||-.+.+|.
T Consensus 48 k~~i~~ie~~ldEA~eLl~qMelE~r~~p-------~s~R~~~~~klr~Yk~dL~~lk 98 (102)
T 2qyw_A 48 KKLVRDFDEKQQEANETLAEMEEELRYAP-------LTFRNPMMSKLRNYRKDLAKLH 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSC-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666666654442 1223345555555555555544
No 64
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=34.05 E-value=89 Score=34.44 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhhhcc--ccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHh
Q 004110 22 ELESQIDSFEAELEGLTV--KKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 96 (773)
Q Consensus 22 eL~~QiE~lEaEiEkLs~--KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEs 96 (773)
+|..++|.++++..+++. ++.|++.+..++|......-+--|+.|| +++.++++.|+..+-.
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 105 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELE-------------NEVEELKKKIDYYLWR 105 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHh
Confidence 445555666666555543 2212222345566666666677777777 5666777777777766
No 65
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=33.49 E-value=72 Score=34.70 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhhhcc--ccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 004110 21 SELESQIDSFEAELEGLTV--KKGKTRPPRLTHLETSITRHKAHIMKLE 67 (773)
Q Consensus 21 deL~~QiE~lEaEiEkLs~--KKgKk~~~r~e~Le~~IeRhk~HI~KLE 67 (773)
.+|..++|.++++..+++. ++.|++.+..++|.......+-.|+.||
T Consensus 40 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 88 (425)
T 2dq3_A 40 REIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLE 88 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666553 2212222223344444444455555555
No 66
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=32.53 E-value=42 Score=29.04 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 004110 20 VSELESQIDSFEAELEGL 37 (773)
Q Consensus 20 IdeL~~QiE~lEaEiEkL 37 (773)
++.|..+|+.+|++++.|
T Consensus 24 le~le~~Ie~LE~~i~~l 41 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEAL 41 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 67
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=31.23 E-value=1e+02 Score=29.20 Aligned_cols=45 Identities=11% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHH
Q 004110 9 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITR 58 (773)
Q Consensus 9 K~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeR 58 (773)
..|++++|...|..-...+++++.+ -++|+....|.+.|+..+++
T Consensus 47 ~~e~~~lI~~yl~R~d~ELeql~~~-----rR~gRp~s~Re~~L~~~~~~ 91 (144)
T 2kkm_A 47 HAHTREFIQSFIERDDTELDELKKK-----RRSNRPPSNRQVLLQQRRDQ 91 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----GGGTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHh-----hCCCCCCchHHHHHHHHHHH
Confidence 4677777777776666666555553 24566566788888776653
No 68
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=31.14 E-value=85 Score=30.57 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-------------------c------cccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGL-------------------T------VKKGKTRPPRLTHLETSITRHKAHIMKLE 67 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkL-------------------s------~KKgKk~~~r~e~Le~~IeRhk~HI~KLE 67 (773)
..-|++.|.+|++.++.||. +..+ + .++.|.....+.++...+-....|| ++|
T Consensus 6 l~~~q~l~kele~eL~eLek-~p~y~~~s~Y~~Qk~lWee~~~i~~~~m~~~~~lk~d~~~~kk~~~dL~dFg~h~-k~E 83 (154)
T 4fz4_A 6 VEEVQKVVKELEKELGELDK-VPSYGDAQDYSYQKALWEEFLRIGKDNMDYASKMKADDKFFHKVKGDLNDFKYQI-KVE 83 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SCCCCSCGGGHHHHHHHHHHHHHHHHHHHHTTSCCTTCTTHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccccCCcchhhHHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHH-HHH
Confidence 44567777777777766654 1111 0 1334555667778888888889997 999
Q ss_pred HHHHhhh
Q 004110 68 LILRLLD 74 (773)
Q Consensus 68 ~iLRlLd 74 (773)
++.|.+.
T Consensus 84 ~~tRqVa 90 (154)
T 4fz4_A 84 NYIRQVA 90 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998763
No 69
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=31.01 E-value=1.9e+02 Score=26.34 Aligned_cols=46 Identities=7% Similarity=0.178 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCCC
Q 004110 54 TSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 99 (773)
Q Consensus 54 ~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd 99 (773)
.+-+=....+.-+|.+|..|..+..++..-+.|+.-+..||++-+.
T Consensus 33 ~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~ 78 (117)
T 2cpt_A 33 NYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEK 78 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445556778889999999998878888888899999999998743
No 70
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.73 E-value=65 Score=26.68 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
.+-.+-|..-+++|+.+++.|++|++.|
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666665554
No 71
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=30.63 E-value=1.2e+02 Score=33.21 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc----ccCCCCChhhHHHHHH---HHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHH
Q 004110 18 NLVSELESQIDSFEAELEGLTV----KKGKTRPPRLTHLETS---ITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 90 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~----KKgKk~~~r~e~Le~~---IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDI 90 (773)
.-++.|...++.+|.++..-.. +|-++-..+..+|+.. .++.+--+..|+.++.|++..+-|++-.+.++++|
T Consensus 17 ~~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~ 96 (371)
T 1zbt_A 17 DQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEEL 96 (371)
T ss_dssp HHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 4567778888888877655332 2222223344455544 44555556667777777764244777777777777
Q ss_pred HHHHHhC
Q 004110 91 EDYVERN 97 (773)
Q Consensus 91 eyYVEsN 97 (773)
+..-+.-
T Consensus 97 ~~l~~~l 103 (371)
T 1zbt_A 97 KNSKVAK 103 (371)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.39 E-value=1.7e+02 Score=31.83 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 004110 16 LNNLVSELESQIDSFEAELEG 36 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEk 36 (773)
|++-++++++.+..++.+++.
T Consensus 468 l~~~~~~~~~~l~~~~~~i~~ 488 (597)
T 3oja_B 468 LTNEQIQQEQLLQGLHAEIDT 488 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 333333344444444444443
No 73
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=30.30 E-value=1.7e+02 Score=23.34 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 004110 14 DWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELI 69 (773)
Q Consensus 14 dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~i 69 (773)
.||...|..|++-+=++|.+- +.|+..|.+.+..|.+||.-
T Consensus 6 aylrkkiarlkkdnlqlerde---------------qnlekiianlrdeiarlene 46 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDE---------------QNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhH---------------hhHHHHHHHHHHHHHHHHHH
Confidence 588888888887766666652 24677788888888888854
No 74
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=30.19 E-value=1e+02 Score=27.46 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004110 7 KAKSETRDWLNNLVSELESQID 28 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE 28 (773)
|++.|++.-+..+|-.++++++
T Consensus 14 re~iEarN~aEsliy~~e~~L~ 35 (120)
T 2p32_A 14 LVPRGSHMGLESYAFNLKQTIE 35 (120)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666654
No 75
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=30.15 E-value=32 Score=26.05 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 004110 16 LNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkL 37 (773)
.+.-||+|++|+-.||.+|-.|
T Consensus 12 ~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhHHHHHHHHHHHHHHHHhc
Confidence 3556999999999999997544
No 76
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=30.10 E-value=1.5e+02 Score=33.37 Aligned_cols=97 Identities=10% Similarity=0.136 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc---------cccC-C---CC-----------ChhhHHHHHHHHHHHHHHHHHH
Q 004110 12 TRDWLNNLVSELESQIDSFEAELEGLT---------VKKG-K---TR-----------PPRLTHLETSITRHKAHIMKLE 67 (773)
Q Consensus 12 a~dwL~~~IdeL~~QiE~lEaEiEkLs---------~KKg-K---k~-----------~~r~e~Le~~IeRhk~HI~KLE 67 (773)
+..=+++.|++|++.++.+..-.-..- .||+ + .+ +.|++.|+..|..+=-+|.-|-
T Consensus 59 qerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq 138 (491)
T 1m1j_A 59 TDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQ 138 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567778888887777754322110 1221 1 11 1256666666666666666666
Q ss_pred HHHHhhhCCCCChhhHHHHHHHHHHHHHhCCC---CccccccccccccCC
Q 004110 68 LILRLLDNDELSPEQVNDVKDLLEDYVERNQD---DFEEFSDVDELYHLL 114 (773)
Q Consensus 68 ~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQd---DF~Ef~dde~iYD~L 114 (773)
.+||-+ --+|..|.-||+-=++.=.. =-.+|.=|-+.|++|
T Consensus 139 ~~l~~q------~skIQRLE~dI~~q~~~Cr~pC~r~~~y~VD~~~Ye~~ 182 (491)
T 1m1j_A 139 NSIQEQ------VVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNI 182 (491)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHTTTTTBSSCCCCCCCTTTTHHH
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHHhcchhhhhHHhhhcHHHHHHH
Confidence 666655 46777888899988887543 113443355666655
No 77
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.08 E-value=2.2e+02 Score=23.14 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 8 AKSETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 8 eK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
.|.+-.+-|..-++.|+.+++.|..+|+.|.
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788888888888888888887663
No 78
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=29.40 E-value=82 Score=28.46 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 1 MKDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 1 ~lDP~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
+.||+|.++- ..=|+.-++.|+.+.-.|..-.+.|.
T Consensus 5 ~~dpeElr~F--a~~L~~F~d~Lq~~~~~L~~~f~~L~ 40 (94)
T 3fx7_A 5 QMDTEEVREF--VGHLERFKELLREEVNSLSNHFHNLE 40 (94)
T ss_dssp CCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5788876432 23355667777777777777777773
No 79
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=28.97 E-value=39 Score=30.52 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhhhh
Q 004110 23 LESQIDSFEAELEGL 37 (773)
Q Consensus 23 L~~QiE~lEaEiEkL 37 (773)
|++++|++..|||++
T Consensus 54 L~Rk~DKl~~ele~l 68 (93)
T 3sjb_C 54 NNRKLDSLDKEINNL 68 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555443
No 80
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.81 E-value=1.3e+02 Score=36.82 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 004110 54 TSITRHKAHIMKLE 67 (773)
Q Consensus 54 ~~IeRhk~HI~KLE 67 (773)
..+..-+-...+||
T Consensus 1023 ~kv~~L~~e~~~L~ 1036 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLK 1036 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 81
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.53 E-value=1.5e+02 Score=25.85 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 9 KSETRDWLNNLVSELESQIDSFEAELE 35 (773)
Q Consensus 9 K~Ea~dwL~~~IdeL~~QiE~lEaEiE 35 (773)
+.|+...|.+-++.|+..++.++..++
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~ 94 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEK 94 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544443
No 82
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=28.44 E-value=1.4e+02 Score=29.01 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=24.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004110 45 RPPRLTHLETSITRHKAHIMKLELILRLLDNDE 77 (773)
Q Consensus 45 ~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~ 77 (773)
.++=++.++..++--+-||.+||.|++.|.-.-
T Consensus 35 ~peLk~a~e~Hl~eT~~qi~rLe~vf~~lg~~~ 67 (166)
T 3hiu_A 35 YPELKRRIEQHVEETQQQSAGVQRCLELLNGSI 67 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 334455677777777899999999999987543
No 83
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.37 E-value=3.3e+02 Score=26.58 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=31.1
Q ss_pred CCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHH
Q 004110 2 KDPKEKAKSETR-DWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLET 54 (773)
Q Consensus 2 lDP~EkeK~Ea~-dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~ 54 (773)
|.|+++++...+ +=...-+.+|.+|+.....|+..|..+ .+-+++++++|-.
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a-~~~DeakI~aL~~ 120 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA-SSPDTAKINAVAK 120 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHH
Confidence 556776665443 334445677888888888888877643 2334444444433
No 84
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.00 E-value=1.7e+02 Score=26.98 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 004110 51 HLETSITRHKAHIMKLELILRLL 73 (773)
Q Consensus 51 ~Le~~IeRhk~HI~KLE~iLRlL 73 (773)
-|+..++.-...|..|+.++..|
T Consensus 85 ~L~~~~~~l~~~i~~L~~~~~~L 107 (142)
T 3gp4_A 85 LLKKQRIELKNRIDVMQEALDRL 107 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444433
No 85
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.83 E-value=38 Score=27.37 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 004110 11 ETRDWLNNLVS 21 (773)
Q Consensus 11 Ea~dwL~~~Id 21 (773)
++.+||+..+.
T Consensus 2 ~AlefIk~~LG 12 (53)
T 2yy0_A 2 SALDFLKHHLG 12 (53)
T ss_dssp -----------
T ss_pred cHHHHHHHHcC
Confidence 45667776654
No 86
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.65 E-value=74 Score=31.79 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CChhhHHHHHHHHHHHHHhC
Q 004110 49 LTHLETSITRHKAHIMKLELILRLLDNDE-LSPEQVNDVKDLLEDYVERN 97 (773)
Q Consensus 49 ~e~Le~~IeRhk~HI~KLE~iLRlLdNd~-LdPe~V~dIKDDIeyYVEsN 97 (773)
+..|+...+..+.+|..||..-.-|++.. +.-..+.|+..-++.=||.|
T Consensus 97 l~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 97 LSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45566666677777777777766666554 55666777777777777776
No 87
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=27.34 E-value=51 Score=28.65 Aligned_cols=12 Identities=8% Similarity=0.063 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 004110 56 ITRHKAHIMKLE 67 (773)
Q Consensus 56 IeRhk~HI~KLE 67 (773)
++.++..|..||
T Consensus 30 l~~~q~~i~~lE 41 (86)
T 1x8y_A 30 RDTSRRLLAEKE 41 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 88
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.18 E-value=61 Score=26.98 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 12 TRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 12 a~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
+..-.+.-|.+|++++..|++||+.|
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34446777999999999999999976
No 89
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=26.98 E-value=54 Score=28.74 Aligned_cols=46 Identities=30% Similarity=0.536 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhhc-----cccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 22 ELESQIDSFEAELEGLT-----VKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 73 (773)
Q Consensus 22 eL~~QiE~lEaEiEkLs-----~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlL 73 (773)
.|++.++...+||+.|- .|+|+. +|+..|+|-..-...|+.-+..|
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~------KL~~mi~~l~~E~~~l~~ni~~l 65 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQ------KLEEMVTRLDQEVAEVDKNIELL 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888988773 144443 45555555555555555444443
No 90
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.92 E-value=2.6e+02 Score=28.08 Aligned_cols=28 Identities=18% Similarity=0.070 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
....-++..|++|+.++..+|.+|+.+.
T Consensus 46 ~~~~~~~~~l~d~~~~~~~~e~~i~~~~ 73 (256)
T 3na7_A 46 KAILNLEEEKLALKLQVSKNEQTLQDTN 73 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666667777777777776654
No 91
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=26.84 E-value=4e+02 Score=25.89 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=15.5
Q ss_pred CCCChhhHH---HHHHHHHHHHHhC
Q 004110 76 DELSPEQVN---DVKDLLEDYVERN 97 (773)
Q Consensus 76 d~LdPe~V~---dIKDDIeyYVEsN 97 (773)
..|+|.+++ +..+.|..|..+-
T Consensus 104 ~~LS~~E~~y~~~y~~ll~~y~~~~ 128 (196)
T 2q9q_C 104 FHMAAEEMEWFNNYKRSLATYMRSL 128 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHhc
Confidence 568888876 4666777777754
No 92
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=26.81 E-value=2.6e+02 Score=22.83 Aligned_cols=36 Identities=6% Similarity=0.109 Sum_probs=29.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 004110 2 KDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV 39 (773)
Q Consensus 2 lDP~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~ 39 (773)
.||++. +.+..-+....++|+..++.|+.+++.|..
T Consensus 6 v~~~~l--~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~ 41 (97)
T 2vs0_A 6 MSPEEI--RAKSQSYGQGSDQIRQILSDLTRAQGEIAA 41 (97)
T ss_dssp SCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577776 556677888899999999999999998863
No 93
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=26.42 E-value=34 Score=35.45 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhHHHHHHHHHH
Q 004110 21 SELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLLED 92 (773)
Q Consensus 21 deL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld-Pe~V~dIKDDIey 92 (773)
..|+++.+.+..++|-|.++|.=. ...|.+|...|++-+.=.+++..=|--|+-+++. -..+..|++-|++
T Consensus 152 ~~Lkk~~~~i~~~LelL~IRK~ma-~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief 223 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFLNIQKNST-LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDF 223 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 456666666666666666544311 2467777778877777666666666666666654 4556667766654
No 94
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=26.15 E-value=2.3e+02 Score=26.28 Aligned_cols=60 Identities=25% Similarity=0.218 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 004110 10 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 75 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdN 75 (773)
.++.+-||+.|.-...=++.++.=+|++ +++.=+..+..++..|+-|+..|...|+.|--
T Consensus 10 ~~~i~~Ln~Li~~~~D~~~gY~~aae~~------~d~~lk~~f~~~a~~~~~~~~eL~~~i~~lGg 69 (153)
T 4etr_A 10 DDTLDVLNDLLQTSKDGEAGFHACAEDL------RDPQLKAAMLEQSRDCAAAADELERIVLELGG 69 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4666777777777777777777765544 23344667889999999999999999998754
No 95
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=26.03 E-value=1.8e+02 Score=27.50 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCC-------C---------CC---hhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004110 16 LNNLVSELESQIDSFEAELEGLTVKKGK-------T---------RP---PRLTHLETSITRHKAHIMKLELILRLLDND 76 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs~KKgK-------k---------~~---~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd 76 (773)
|..-|.+|+.++..++.+++.+-..-+. + +. +.+++|+..|.--..-|.+||.-+.-+++.
T Consensus 11 l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeLe~leeL~~ki~eL~~kvA~le~e~~~~e~~ 90 (125)
T 2pms_C 11 PQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKAAEEN 90 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666777777777777776665321110 0 00 135677888888888899999888877753
Q ss_pred -CCChhhHHHHHHHH
Q 004110 77 -ELSPEQVNDVKDLL 90 (773)
Q Consensus 77 -~LdPe~V~dIKDDI 90 (773)
.++++-...|+.+|
T Consensus 91 ~~~~~~~~e~le~~l 105 (125)
T 2pms_C 91 NNVEDYFKEGLEKTI 105 (125)
T ss_dssp ---CHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHH
Confidence 35565555666665
No 96
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=25.82 E-value=20 Score=38.20 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004110 18 NLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 74 (773)
Q Consensus 18 ~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLd 74 (773)
..|.+++.|+|.....|+....++ ...-|..|+..++..+..|.+||..++.+.
T Consensus 4 ~~~~~~~~qle~~~~~ike~~~~~---~~~~I~~Lq~~le~l~~KIq~Le~~v~~~~ 57 (328)
T 1fzc_B 4 NVVNEYSSELEKHQLYIDETVNSN---IPTNLRVLRSILENLRSKIQKLESDVSAQM 57 (328)
T ss_dssp --------------CTTTTTTTTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777765443111 112477788888888888999987776543
No 97
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=25.40 E-value=1.7e+02 Score=33.48 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHhC
Q 004110 81 EQVNDVKDLLEDYVERN 97 (773)
Q Consensus 81 e~V~dIKDDIeyYVEsN 97 (773)
+...++.+++..|+..-
T Consensus 395 ~~~~~v~~~l~~~i~~l 411 (695)
T 2j69_A 395 TQARTISESFRSYVLNL 411 (695)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456777777777765
No 98
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.95 E-value=1.9e+02 Score=24.82 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDE 77 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~ 77 (773)
.|++|...+.++..-|.+|+.-||+|....
T Consensus 29 tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 29 ALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888888886543
No 99
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=24.76 E-value=4.6e+02 Score=25.07 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHH
Q 004110 16 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 95 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVE 95 (773)
++++..-|+.-+..|++|++... .=++-|+..+.-++.++.+-|.+|+--++- -+.|..+|-.|+-+|+
T Consensus 77 veeA~~~L~eYn~rL~~E~~dR~--------~L~~~L~~~~~~~~~~l~e~e~~leeyK~K---l~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 77 VDEACLLLAEYNGRLAAELEDRR--------QLARMLVEYTQNQKDVLSEKEKKLEEYKQK---LARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 44555566666677777765321 113455666666666666666665433321 4677778888888877
Q ss_pred h
Q 004110 96 R 96 (773)
Q Consensus 96 s 96 (773)
+
T Consensus 146 s 146 (152)
T 4fla_A 146 S 146 (152)
T ss_dssp T
T ss_pred c
Confidence 5
No 100
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Probab=24.60 E-value=2.7e+02 Score=26.22 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhh--CCCCChhhHHHHHHHHHHHH
Q 004110 47 PRLTHLETSITRHKAHIMKLELILRLLD--NDELSPEQVNDVKDLLEDYV 94 (773)
Q Consensus 47 ~r~e~Le~~IeRhk~HI~KLE~iLRlLd--Nd~LdPe~V~dIKDDIeyYV 94 (773)
.-.+.|+..++.++.-|..+..++++.+ +|..+-+.+.+|.++.|..+
T Consensus 107 ~~~eml~~ll~~~~~~i~~~r~~i~~aee~~D~~T~dll~~il~~~Ek~~ 156 (164)
T 4eve_A 107 HSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSI 156 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999887 46677777888888877543
No 101
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=23.90 E-value=90 Score=26.64 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 004110 19 LVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 19 ~IdeL~~QiE~lEaEiEkLs 38 (773)
.+++|..+||.++.+|=.|-
T Consensus 4 ~L~~lR~~ID~iD~~l~~Ll 23 (90)
T 2d8d_A 4 RIQALRKEVDRVNREILRLL 23 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999987765
No 102
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.88 E-value=1.4e+02 Score=33.54 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhhhcc--ccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHh
Q 004110 22 ELESQIDSFEAELEGLTV--KKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 96 (773)
Q Consensus 22 eL~~QiE~lEaEiEkLs~--KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEs 96 (773)
+|..++|.+.++...++. ++.|++.+..++|......-+--|+.|| +++.+|.+.|+..+-.
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le-------------~~~~~~~~~~~~~l~~ 107 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEII-------------EKEAEADKNLRSKINQ 107 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHh
Confidence 445556666666665552 1111122234455555555666666666 4555666666666555
No 103
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=23.84 E-value=2.3e+02 Score=24.66 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 004110 50 THLETSITRHKAHIMKLELILRL 72 (773)
Q Consensus 50 e~Le~~IeRhk~HI~KLE~iLRl 72 (773)
.++.....+-|.-|.+||.-++-
T Consensus 28 aEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 28 AEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45566666777777788865543
No 104
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=23.69 E-value=1.4e+02 Score=26.59 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 004110 14 DWLNNLVSELESQIDSFEAELEG 36 (773)
Q Consensus 14 dwL~~~IdeL~~QiE~lEaEiEk 36 (773)
+|+...|++.+.++..+...||.
T Consensus 8 ~yF~~lv~~fe~rL~~Yr~~Iee 30 (93)
T 3t98_B 8 DYFRVLVQQFEVQLQQYRQQIEE 30 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444444443
No 105
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=23.63 E-value=4.1e+02 Score=27.32 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhCCC
Q 004110 85 DVKDLLEDYVERNQD 99 (773)
Q Consensus 85 dIKDDIeyYVEsNQd 99 (773)
+...||.+||++|.-
T Consensus 285 d~~~Di~~fi~~~~t 299 (350)
T 3aco_A 285 DAVEDLRWFRANHGP 299 (350)
T ss_dssp CHHHHHHHHHHHTST
T ss_pred CHHHHHHHHHHHcCC
Confidence 467899999999865
No 106
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=23.60 E-value=82 Score=28.65 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhhCCCCChh-hHHHHHHHHHHHHHhC
Q 004110 60 KAHIMKLELILRLLDNDELSPE-QVNDVKDLLEDYVERN 97 (773)
Q Consensus 60 k~HI~KLE~iLRlLdNd~LdPe-~V~dIKDDIeyYVEsN 97 (773)
.-=+.+||.|++.|+++.|+-+ -+..+++-++.+=.++
T Consensus 33 Eeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~ 71 (100)
T 1vp7_A 33 ETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQ 71 (100)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3346789999999999999944 4445666665554443
No 107
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=23.58 E-value=2.5e+02 Score=24.64 Aligned_cols=70 Identities=13% Similarity=0.188 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHH----HHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHH
Q 004110 20 VSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETS----ITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 90 (773)
Q Consensus 20 IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~----IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDI 90 (773)
+++|..+||.++.+|=.|-.++.+- ..++.++|.. +.....-...|+.+..+..+..|+|+.|..|=..|
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~-~~~v~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~i 80 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERREL-AVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLI 80 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhHhCCCCHHHHHHHHHHH
Confidence 7888888888888886664321000 0001111100 00111112334445555555678888887754444
No 108
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=23.21 E-value=2.4e+02 Score=26.11 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkLs 38 (773)
+.+|+.-|+.|..+++.++.+++.+.
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~~l~~l~ 33 (284)
T 1c1g_A 8 MQMLKLDKENALDRADEAEADKKAAE 33 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666553
No 109
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=23.20 E-value=74 Score=27.90 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=28.4
Q ss_pred HHHHHHHHHHH--HHHhhhhcc--ccCCC--CChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004110 20 VSELESQIDSF--EAELEGLTV--KKGKT--RPPRLTHLETSITRHKAHIMKLELILRLL 73 (773)
Q Consensus 20 IdeL~~QiE~l--EaEiEkLs~--KKgKk--~~~r~e~Le~~IeRhk~HI~KLE~iLRlL 73 (773)
|+++++|||.+ +.++|+|-. .|+.+ +.=-.+.++...|+-+-.+.+++..+.-|
T Consensus 4 I~EIEk~ID~aIE~edyE~L~~LL~kREkLlk~L~~e~l~~i~EkDk~R~~~Ik~~~~~L 63 (79)
T 2fzt_A 4 IDEIERKIDEAIEKEDYETLLSLLNKRKELMEGLPKDKLSEILEKDRKRLEIIEKRKTAL 63 (79)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888876 345666542 22110 01123445555666665555555554444
No 110
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=23.18 E-value=1.7e+02 Score=28.13 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHHHH
Q 004110 80 PEQVNDVKDLLEDYVE 95 (773)
Q Consensus 80 Pe~V~dIKDDIeyYVE 95 (773)
-+.+.|++||++.-.|
T Consensus 106 edL~~DL~eDL~ka~e 121 (141)
T 3okq_A 106 EELILDLKEDLGKALE 121 (141)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677777765444
No 111
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.95 E-value=1.5e+02 Score=32.42 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHH
Q 004110 14 DWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY 93 (773)
Q Consensus 14 dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyY 93 (773)
+-|.+-+++|+++++.++.+++.+ +..+++-+.++.+.|...|.|.| +|.++|+-|.=|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~---------------~~~~~~~~~~l~~~~~~rr~l~n------~~~~l~gnIrV~ 64 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQ---------------AAELETCKEQLFQSNMERKELHN------TVMDLRDNIRVF 64 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH------HHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH------HHHHhCCCEEEE
Confidence 345555566666666666555433 33333333344555556666654 445555444333
No 112
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=22.92 E-value=1.5e+02 Score=40.50 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 004110 17 NNLVSELESQIDSFEAELEGLT 38 (773)
Q Consensus 17 ~~~IdeL~~QiE~lEaEiEkLs 38 (773)
++.|.+|+..++.++++++++.
T Consensus 2034 ~~~L~~le~~l~~L~~~~~~~~ 2055 (3245)
T 3vkg_A 2034 VATITALEKSIATYKEEYATLI 2055 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666554
No 113
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=22.87 E-value=1.6e+02 Score=33.80 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccc
Q 004110 17 NNLVSELESQIDSFEAELEGLTVKK 41 (773)
Q Consensus 17 ~~~IdeL~~QiE~lEaEiEkLs~KK 41 (773)
.++.+.|+..|+..+.+++++..+|
T Consensus 629 ~~~~~~~~~~i~~~~~~l~~~~~~~ 653 (695)
T 2j69_A 629 REVSKRINDDIVSRKSELDNLVKQK 653 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677777777777777776544
No 114
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=22.77 E-value=2.4e+02 Score=27.49 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhCCC
Q 004110 85 DVKDLLEDYVERNQD 99 (773)
Q Consensus 85 dIKDDIeyYVEsNQd 99 (773)
+...||.+||+.|.-
T Consensus 248 d~~~D~~~fi~~~~t 262 (276)
T 2v0o_A 248 TVESLIQKFAESKGT 262 (276)
T ss_dssp CHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHhcCC
Confidence 456889999999875
No 115
>3m9d_G Prokaryotic ubiquitin-like protein PUP; alpha helix coil COIL, 5 beta-strand barrel, ATP-binding, CH nucleotide-binding, proteasome; 4.50A {Mycobacterium tuberculosis}
Probab=22.71 E-value=12 Score=32.03 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCccc
Q 004110 80 PEQVNDVKDLLEDYVERNQDDFEE 103 (773)
Q Consensus 80 Pe~V~dIKDDIeyYVEsNQdDF~E 103 (773)
.+.|++|-|+|+.-||.|-++|+-
T Consensus 37 ~~~~D~lLDeId~vLe~NAeefV~ 60 (68)
T 3m9d_G 37 TEETDDLLDEIDDVLEENAEDFVR 60 (68)
T ss_dssp TTTTTTHHHHHTTTSSSCC-----
T ss_pred hhhHHHHHHHHHHHHHHhHHHHHH
Confidence 568899999999999999997753
No 116
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=22.57 E-value=2.1e+02 Score=34.88 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 004110 16 LNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkL 37 (773)
+.+.+.+|+.+++.++.+++.+
T Consensus 876 le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 876 AEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555554444
No 117
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=22.55 E-value=1.1e+02 Score=34.12 Aligned_cols=84 Identities=5% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------------ccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLTV-------------KKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 77 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~-------------KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~ 77 (773)
...+||...=+.++.+++.||..++.|+. -+-+.++.++.+++..|..++-.++++-..++.+.+..
T Consensus 86 ~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~ 165 (464)
T 1m1j_B 86 ELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNN 165 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred CChhhHHHHHHHHHHHHH
Q 004110 78 LSPEQVNDVKDLLEDYVE 95 (773)
Q Consensus 78 LdPe~V~dIKDDIeyYVE 95 (773)
+ +..|..|++.|+.+-+
T Consensus 166 ~-~~~i~~L~~~~~~l~~ 182 (464)
T 1m1j_B 166 I-PSSLRVLRAVIDSLHK 182 (464)
T ss_dssp H-HHHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHH
No 118
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=22.45 E-value=32 Score=30.05 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 004110 10 SETRDWLNNLVSELESQIDSFEAEL 34 (773)
Q Consensus 10 ~Ea~dwL~~~IdeL~~QiE~lEaEi 34 (773)
+|..+.|++.|.||..++..||.|-
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN 38 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLEREN 38 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888888888883
No 119
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.93 E-value=99 Score=26.12 Aligned_cols=29 Identities=7% Similarity=0.255 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 9 KSETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 9 K~Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
|.++..---+.|..|+.+++.++.|++.|
T Consensus 48 K~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 48 RAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455666666666666666655
No 120
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.92 E-value=3.9e+02 Score=23.12 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=29.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 2 KDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 2 lDP~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
+-|+.+++.....-++.-+..|..|+..++.++..+
T Consensus 4 ~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~ 39 (117)
T 2zqm_A 4 IPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEA 39 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888999999999988887665
No 121
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=21.89 E-value=3e+02 Score=27.95 Aligned_cols=15 Identities=13% Similarity=0.147 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhCCC
Q 004110 85 DVKDLLEDYVERNQD 99 (773)
Q Consensus 85 dIKDDIeyYVEsNQd 99 (773)
+...||.+||++|.-
T Consensus 276 d~~~Di~~fi~~~~t 290 (337)
T 2x3v_A 276 DAQEDLRWFRSTSGP 290 (337)
T ss_dssp CHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHHHhCC
Confidence 467899999999865
No 122
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.87 E-value=3.1e+02 Score=29.78 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHh
Q 004110 21 SELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 96 (773)
Q Consensus 21 deL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEs 96 (773)
.+|..++|.++++..+++.+=++++.+..++|.......+--|+.|| +++.++++.|+..+-.
T Consensus 38 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 100 (421)
T 1ses_A 38 QELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLE-------------EALREKEARLEALLLQ 100 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHh
Confidence 34455555555655555432122222445566666666666666666 4555666666665554
No 123
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=21.71 E-value=4e+02 Score=23.21 Aligned_cols=38 Identities=13% Similarity=0.331 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 004110 16 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLEL 68 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~ 68 (773)
.+.++-+|..|++.++.||. .|+-.||...+.+.+|..
T Consensus 18 ~~q~~~~Lq~Ql~~Lq~Ev~---------------~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 18 HSQLLTQLQQQLSDNQSDID---------------SLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHHHH---------------HHHhHHHHHHHHHHHHHH
Confidence 45678889999999999975 557777777777777664
No 124
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.57 E-value=2.6e+02 Score=27.51 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004110 7 KAKSETRDWLNNLVSELESQIDS 29 (773)
Q Consensus 7 keK~Ea~dwL~~~IdeL~~QiE~ 29 (773)
-++.|..+=|+.+|.+|..+.-.
T Consensus 8 ~~~~~~l~~Lq~~i~~l~~~~~~ 30 (174)
T 2p22_A 8 TNHHEMLQNLQTVVNELYREDVD 30 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777666543
No 125
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=21.22 E-value=1.5e+02 Score=33.68 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHH
Q 004110 8 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVK 87 (773)
Q Consensus 8 eK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIK 87 (773)
+++.....+.-+|..|++.++.-|...++.. ++.++.-++-.+.-|+.++--|.-||.+- ..+++++++
T Consensus 407 e~~~ik~i~~s~i~sL~eKi~~AE~~~~k~e---~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~~--------~tdd~~~v~ 475 (526)
T 2wb7_A 407 DREKINATTKAMINSLQEKIDEAEQLLAKAK---GMNNENAIEYAQGAIDEYKAAINDLQKAA--------QQDDYQMFL 475 (526)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHHHHHT--------TCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccCCHHHHHHHHHHHHHHHHHHHHHHhhh--------ccCCHHHHH
Confidence 4455666677777777777777666644321 24555566677778888877777777654 245566666
Q ss_pred HHH
Q 004110 88 DLL 90 (773)
Q Consensus 88 DDI 90 (773)
..+
T Consensus 476 ~~~ 478 (526)
T 2wb7_A 476 NYL 478 (526)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 126
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=21.20 E-value=4.7e+02 Score=26.23 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhCCC
Q 004110 85 DVKDLLEDYVERNQD 99 (773)
Q Consensus 85 dIKDDIeyYVEsNQd 99 (773)
+...||.+||++|.-
T Consensus 285 d~~~Di~~fi~~~~t 299 (312)
T 3abh_A 285 DAVEDLRWFRANHGP 299 (312)
T ss_dssp CHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHHHhCC
Confidence 356788888888764
No 127
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=21.20 E-value=1.4e+02 Score=29.39 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhCCCCc
Q 004110 85 DVKDLLEDYVERNQDDF 101 (773)
Q Consensus 85 dIKDDIeyYVEsNQdDF 101 (773)
+...||..||+.|...|
T Consensus 265 d~~~D~~~fi~~~~tg~ 281 (305)
T 2efl_A 265 DQKNDSQLVIEAYKSGF 281 (305)
T ss_dssp CHHHHHHHHHHHHCCCC
T ss_pred CchhhHHHHHHHcCCCC
Confidence 45689999999987533
No 128
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.17 E-value=1.2e+02 Score=24.83 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 004110 13 RDWLNNLVSELESQIDSFEAELEGL 37 (773)
Q Consensus 13 ~dwL~~~IdeL~~QiE~lEaEiEkL 37 (773)
.+-|..-+++|+.+++.|+.+|+.|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L 49 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554433
No 129
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.97 E-value=66 Score=34.34 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhHHHHHHHHHHHHHhCC
Q 004110 48 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQ 98 (773)
Q Consensus 48 r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~LdPe~V~dIKDDIeyYVEsNQ 98 (773)
+|.+|+..|.++.--|..|+.+|+-++ .+|.+++..|....+.-+
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~------~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQ------QFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHh
Confidence 444556666666666666666666553 566666666665555443
No 130
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=20.70 E-value=4.4e+02 Score=23.27 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 004110 16 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELI 69 (773)
Q Consensus 16 L~~~IdeL~~QiE~lEaEiEkLs~KKgKk~~~r~e~Le~~IeRhk~HI~KLE~i 69 (773)
|-.-|.+|+++-+.+..||+.+..... .-..++.+.|.+++.||...||..
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~---~L~~eE~~~w~eyn~~~~ql~e~~ 73 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAE---RLDQEEAQYQREYSEFKRQQLELD 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554432111 013456777889999998888754
No 131
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=20.69 E-value=1.9e+02 Score=24.55 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 004110 4 PKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV-KKGKTRPPRLTHLETSITRHKAHIMKLE 67 (773)
Q Consensus 4 P~EkeK~Ea~dwL~~~IdeL~~QiE~lEaEiEkLs~-KKgKk~~~r~e~Le~~IeRhk~HI~KLE 67 (773)
|+|. +++-..+....++|+.+++.|+.+++.|.. =+| .--+......++-+-...+|.
T Consensus 2 peel--~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G----~Aa~af~~~~~~w~~~a~~l~ 60 (94)
T 4i0x_A 2 IDEV--GALSKFAASLADQMRAGSNSLDRDVQSLFGVWKG----SAADAYRSGWDEMQDGATKVW 60 (94)
T ss_dssp -CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCS----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch----HHHHHHHHHHHHHHHHHHHHH
Confidence 4444 667788999999999999999999999863 122 122344555555555555554
No 132
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=20.68 E-value=3.4e+02 Score=26.94 Aligned_cols=14 Identities=7% Similarity=-0.064 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhCCC
Q 004110 86 VKDLLEDYVERNQD 99 (773)
Q Consensus 86 IKDDIeyYVEsNQd 99 (773)
+..||+.||+++..
T Consensus 264 ~~~Di~~fi~~~~t 277 (290)
T 3i2w_A 264 QQKDLKWWSNNHGI 277 (290)
T ss_dssp HHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHcCC
Confidence 56888889988754
No 133
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=20.68 E-value=2.2e+02 Score=27.66 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=24.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004110 44 TRPPRLTHLETSITRHKAHIMKLELILRLLDND 76 (773)
Q Consensus 44 k~~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd 76 (773)
+.++=++.++..++--+-||.+||.|++.|.-.
T Consensus 37 ~~peLk~a~e~Hl~eT~~qi~rLe~vf~~lg~~ 69 (171)
T 3ogh_B 37 NYPELRARIEQHLSETKNQIVQLETILDRNDIS 69 (171)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 334445567777777789999999999998643
No 134
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.64 E-value=3.2e+02 Score=27.40 Aligned_cols=12 Identities=0% Similarity=0.005 Sum_probs=4.7
Q ss_pred hhhHHHHHHHHH
Q 004110 80 PEQVNDVKDLLE 91 (773)
Q Consensus 80 Pe~V~dIKDDIe 91 (773)
+.++..+...|+
T Consensus 89 ~kE~~aL~kEie 100 (256)
T 3na7_A 89 ERELRSLNIEED 100 (256)
T ss_dssp SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344443333
No 135
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=20.60 E-value=1.1e+02 Score=31.82 Aligned_cols=74 Identities=20% Similarity=0.376 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc------c--ccCCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-h
Q 004110 11 ETRDWLNNLVSELESQIDSFEAELEGLT------V--KKGKTR-PPRLTHLETSITRHKAHIMKLELILRLLDNDELS-P 80 (773)
Q Consensus 11 Ea~dwL~~~IdeL~~QiE~lEaEiEkLs------~--KKgKk~-~~r~e~Le~~IeRhk~HI~KLE~iLRlLdNd~Ld-P 80 (773)
++..+|...|.+|++|++ +|..+.+++ . +|.|.. .+++..-+..++.-.+-+-+||.-.-+|.++++- +
T Consensus 135 ~~~~~~r~~~~~l~~~~~-~e~k~~~~~el~~s~~~d~~~k~~~~~~~~~~e~~~~~l~~e~~R~~~y~~~l~~~~~~~~ 213 (279)
T 3a8n_A 135 DTLRLLKSEIKKLEQKID-MDEKMKKMGEMQLSSVTDSKKKKTILDQIFVWEQNLEQFQMDLFRFRCYLASLQGGELPNP 213 (279)
T ss_dssp CHHHHHHHHHHHHHHHHH-HHHHHTHHHHHHHTTCCCGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCCCH
T ss_pred hhhhhhcchhhhhHHhhc-chhhhccchhhhhhcCCCchhhhhhhHHHHHHHhHhhhhhhhhhhHhhhHhhhccCcCccH
Confidence 466778888889999988 555543322 1 222222 2234444445555555556677777777777764 4
Q ss_pred hhHHH
Q 004110 81 EQVND 85 (773)
Q Consensus 81 e~V~d 85 (773)
..+..
T Consensus 214 ~~l~~ 218 (279)
T 3a8n_A 214 KRLLA 218 (279)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 45443
No 136
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.46 E-value=2e+02 Score=24.66 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 004110 49 LTHLETSITRHKAHIMKLELIL 70 (773)
Q Consensus 49 ~e~Le~~IeRhk~HI~KLE~iL 70 (773)
++.|...|+.-.-.|..|+..|
T Consensus 24 le~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445554444444444433
No 137
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.30 E-value=1.7e+02 Score=27.10 Aligned_cols=12 Identities=17% Similarity=-0.161 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 004110 5 KEKAKSETRDWL 16 (773)
Q Consensus 5 ~EkeK~Ea~dwL 16 (773)
++.++-..+.+|
T Consensus 58 ~dl~~l~~I~~l 69 (148)
T 3gpv_A 58 EALKYLEMILCL 69 (148)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 138
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.05 E-value=2.3e+02 Score=28.06 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 004110 52 LETSITRHKAHIMKLELILRLL 73 (773)
Q Consensus 52 Le~~IeRhk~HI~KLE~iLRlL 73 (773)
|...-++|+.=...|++.|.-|
T Consensus 151 L~~eKek~k~i~~eLDqTl~eL 172 (175)
T 3mud_A 151 VAHAKEENLNMHQMLDQTLLEL 172 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666677766555
Done!