Query 004112
Match_columns 773
No_of_seqs 262 out of 1104
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 14:39:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 100.0 2.2E-49 7.4E-54 424.6 23.6 245 356-610 21-318 (323)
2 2xph_A Sentrin-specific protea 100.0 6.4E-40 2.2E-44 338.1 19.3 182 366-577 43-224 (238)
3 1th0_A SMT3-, sentrin-specific 100.0 2.3E-39 8E-44 331.3 21.7 182 366-577 31-212 (226)
4 2bkr_A Sentrin-specific protea 100.0 1.9E-38 6.5E-43 321.2 20.1 199 356-607 3-211 (212)
5 1euv_A ULP1 protease; SUMO hyd 100.0 2.5E-37 8.4E-42 315.6 19.2 180 365-604 31-217 (221)
6 2oix_A Xanthomonas outer prote 100.0 8.4E-33 2.9E-37 275.8 16.7 179 379-605 1-181 (186)
7 4ekf_A Adenain; alpha and beta 79.9 29 0.00099 34.7 13.4 127 460-609 52-181 (204)
8 4agy_A VP1 protein; picornavir 9.1 1.4E+02 0.0048 29.5 2.2 30 723-753 73-119 (181)
9 4gb3_1 Coat protein 1; capsid 5.5 2.8E+02 0.0097 29.2 2.5 30 724-754 139-185 (281)
10 3k8u_A Putative ABC transporte 4.4 5.2E+02 0.018 23.5 3.3 23 541-563 8-30 (156)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.2e-49 Score=424.61 Aligned_cols=245 Identities=36% Similarity=0.618 Sum_probs=196.0
Q ss_pred eeeccCC-CCCceEEehhhhhccCCCCCcCHHHHHHHHHHHHH-hhcccccCcEEEechHHHHHhhccCCC----CCCcc
Q 004112 356 DVVYPEG-DSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKN-QIQAEEKHRFHFFNSFFFRKLADLDKD----PSSIS 429 (773)
Q Consensus 356 ~vvYp~~-d~~~VsLt~~DL~~L~pg~WLND~IIdFYL~yL~~-~~~~~~~~rv~~FnSfFy~kL~~~~k~----pssls 429 (773)
.++||+. +.+++.|+.+||.||.+++||||+|||||++||.. +..++...++|+||||||++|....+. ...++
T Consensus 21 ~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~s 100 (323)
T 3eay_A 21 LIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLS 100 (323)
T ss_dssp EEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHHHHHTEEECCTHHHHHHSCC--------CCSC
T ss_pred eEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccccccCcEEEEchHHHHHHHhcccccccccccch
Confidence 4789985 67899999999999999999999999999999964 444445678999999999999864321 01122
Q ss_pred hhhHHHHHHHhhhcccCCCCCCeEEEEeeccCceEEEEEecCCCccccc-----------------------hh------
Q 004112 430 DGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFK-----------------------VE------ 480 (773)
Q Consensus 430 ~~~~~y~~VkrWtk~vdLFeKD~IfIPIN~nsHWsLlVIc~P~~~~~~~-----------------------d~------ 480 (773)
....+|.+|+|||+++|||++||||||||.+.||+|+|||+|++..... ++
T Consensus 101 ~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 180 (323)
T 3eay_A 101 MAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTS 180 (323)
T ss_dssp HHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC------------------------------
T ss_pred hHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCccccccccccccccccccccccccccccccccccccc
Confidence 3356899999999999999999999999999999999999997521100 00
Q ss_pred -----------------hccccCCCCeEEEEcCCCCc-chhHHHHHHHHHHHHHHHhccCCcccccccccceeeccCCCC
Q 004112 481 -----------------DLKRSEKVPCILHMDSIKGT-HAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLELP 542 (773)
Q Consensus 481 -----------------d~~~s~k~p~Il~fDSL~g~-~~~v~~~Lr~YL~~E~k~k~~~~~~D~ss~~~n~~~v~~~VP 542 (773)
......|+|||+|||||++. +..+...|+.||..||+.|++.. .++. ...+....+.+|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~-~~f~--~~~~~~~~~~~P 257 (323)
T 3eay_A 181 TLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTH-RQFS--KTNMVDLCPKVP 257 (323)
T ss_dssp -------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSC-CCCC--TTTSCEECCBCC
T ss_pred ccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCC-cCCC--HhHceeccCCCC
Confidence 00123578999999999986 56789999999999999886543 2332 123455567899
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCccChhhhhhhcccccCCCCCchhhHHHHHHHHHHHHHHHHhcc
Q 004112 543 QQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSLIQKLISELLRNRS 610 (773)
Q Consensus 543 QQ~Ng~DCGVFVL~YaE~fl~~~P~~Ftq~dI~~~r~~l~~~WF~p~eis~kR~~I~~LI~eL~e~~s 610 (773)
||.|++|||||||+||++|+.++|.+|++. + ...+||++.+|+.||+.|++||.+|..+++
T Consensus 258 ~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~-~------~~~~wf~~~~i~~kR~ei~~LI~~L~~~q~ 318 (323)
T 3eay_A 258 KQDNSSDCGVYLLQYVESFFKDPIVNFELP-I------HLEKWFPRHVIKTKREDIRELILKLHLQQQ 318 (323)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHSCCCCCCSS-C------BCTTSSCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCcHHHHHHHHHHHHHhCCccccccc-c------ccccCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999988742 2 136899999999999999999999998774
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=6.4e-40 Score=338.08 Aligned_cols=182 Identities=30% Similarity=0.598 Sum_probs=155.4
Q ss_pred ceEEehhhhhccCCCCCcCHHHHHHHHHHHHHhhcccccCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHHhhhccc
Q 004112 366 AVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKV 445 (773)
Q Consensus 366 ~VsLt~~DL~~L~pg~WLND~IIdFYL~yL~~~~~~~~~~rv~~FnSfFy~kL~~~~k~pssls~~~~~y~~VkrWtk~v 445 (773)
++.|+.+|+.+|.+++||||+||+||++||.++......+++|+|+||||++|.. .+|.+|++|++++
T Consensus 43 ~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~sff~~~l~~------------~~~~~v~~w~~~~ 110 (238)
T 2xph_A 43 RLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTKKV 110 (238)
T ss_dssp TEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTSTTSCCEEECCTTTTHHHHT------------TCHHHHTTTTTTC
T ss_pred CcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceeeeecHHHHHhhh------------cccHHHHHHhccC
Confidence 7899999999999999999999999999999876555567899999999999975 3478999999999
Q ss_pred CCCCCCeEEEEeeccCceEEEEEecCCCccccchhhccccCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHHHhccCCcc
Q 004112 446 DIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSE 525 (773)
Q Consensus 446 dLFeKD~IfIPIN~nsHWsLlVIc~P~~~~~~~d~d~~~s~k~p~Il~fDSL~g~~~~v~~~Lr~YL~~E~k~k~~~~~~ 525 (773)
+||++++||||||.+.||+|+||+.+. ++|+|||||++.+......|+.||..+|+.+.+...
T Consensus 111 ~l~~~~~i~iPin~~~HW~L~vi~~~~----------------~~i~~~DSl~~~~~~~~~~l~~~L~~e~~~k~~~~~- 173 (238)
T 2xph_A 111 DVFSVDILLVPIHLGVHWCLAVVDFRK----------------KNITYYDSMGGINNEACRILLQYLKQESIDKKRKEF- 173 (238)
T ss_dssp CGGGSSEEEEEEEETTEEEEEEEETTT----------------TEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHCSCC-
T ss_pred CcccCCEEEEcccCCCceEEEEEEccc----------------ceEEEeecccCCCHHHHHHHHHHHHHHHHHhcCCCc-
Confidence 999999999999999999999999754 589999999999888888899999999987755321
Q ss_pred cccccccceeeccCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhh
Q 004112 526 DVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKL 577 (773)
Q Consensus 526 D~ss~~~n~~~v~~~VPQQ~Ng~DCGVFVL~YaE~fl~~~P~~Ftq~dI~~~ 577 (773)
+. ..|........++|||.|++|||||||+||++|+.+.|..|+|.+|+.+
T Consensus 174 ~~-~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f~q~dm~~~ 224 (238)
T 2xph_A 174 DT-NGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYF 224 (238)
T ss_dssp CC-TTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCCCGGGHHHH
T ss_pred Cc-ccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCcChhhHHHH
Confidence 11 2343222346799999999999999999999999998888777666543
No 3
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=2.3e-39 Score=331.32 Aligned_cols=182 Identities=27% Similarity=0.609 Sum_probs=155.0
Q ss_pred ceEEehhhhhccCCCCCcCHHHHHHHHHHHHHhhcccccCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHHhhhccc
Q 004112 366 AVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKV 445 (773)
Q Consensus 366 ~VsLt~~DL~~L~pg~WLND~IIdFYL~yL~~~~~~~~~~rv~~FnSfFy~kL~~~~k~pssls~~~~~y~~VkrWtk~v 445 (773)
++.|+.+|+.+|.+++||||+||+||++||.++......+++|+||||||.+|.. .+|.+|++|++++
T Consensus 31 ~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~s~f~~~l~~------------~~~~~v~~w~~~~ 98 (226)
T 1th0_A 31 KLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKS------------GGYQAVKRWTKGV 98 (226)
T ss_dssp TEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHHH------------HTGGGTGGGGTTC
T ss_pred CeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhccCCcEEEEeHHHHHHhhh------------cccHHHHHHhhcC
Confidence 6899999999999999999999999999998876555567999999999999974 3578899999999
Q ss_pred CCCCCCeEEEEeeccCceEEEEEecCCCccccchhhccccCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHHHhccCCcc
Q 004112 446 DIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSE 525 (773)
Q Consensus 446 dLFeKD~IfIPIN~nsHWsLlVIc~P~~~~~~~d~d~~~s~k~p~Il~fDSL~g~~~~v~~~Lr~YL~~E~k~k~~~~~~ 525 (773)
+||++++||||||.+.||+|+||+.+. ++|+|||||++.+..+.+.|+.||..+++.+.+...
T Consensus 99 ~l~~~~~i~iPin~~~HW~l~vi~~~~----------------~~i~~~DSl~~~~~~~~~~l~~~l~~e~~~k~~~~~- 161 (226)
T 1th0_A 99 NLFEQEIILVPIHRKVHWSLVVIDLRK----------------KCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDL- 161 (226)
T ss_dssp CGGGSSEEEEEEEETTEEEEEEEETTT----------------TEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCC-
T ss_pred CcccCCEEEEeEEeCcEEEEEEEEcCC----------------CceEEEcCCCCCchHHHHHHHHHHHHHHHHhcCCCC-
Confidence 999999999999999999999999753 699999999999888889999999999987654321
Q ss_pred cccccccceeeccCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhh
Q 004112 526 DVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKL 577 (773)
Q Consensus 526 D~ss~~~n~~~v~~~VPQQ~Ng~DCGVFVL~YaE~fl~~~P~~Ftq~dI~~~ 577 (773)
+. ..|....+.+.++|||.|++|||||||+||++++.+.|..|+|.+|+.+
T Consensus 162 ~~-~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~ 212 (226)
T 1th0_A 162 NL-LEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLF 212 (226)
T ss_dssp CG-GGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHH
T ss_pred Cc-ccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhhHHHH
Confidence 11 2343222335799999999999999999999999998888877666543
No 4
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=1.9e-38 Score=321.19 Aligned_cols=199 Identities=22% Similarity=0.368 Sum_probs=157.4
Q ss_pred eeeccCCCCCceEEehhhhhccCCCCCcCHHHHHHHHHHHHHhhcccccCcEEEec---hHHHHHhhccCCCCCCcchhh
Q 004112 356 DVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFN---SFFFRKLADLDKDPSSISDGK 432 (773)
Q Consensus 356 ~vvYp~~d~~~VsLt~~DL~~L~pg~WLND~IIdFYL~yL~~~~~~~~~~rv~~Fn---SfFy~kL~~~~k~pssls~~~ 432 (773)
+++...+ ++.|+.+|+.+|.+++||||+||+||++||.++..++..+++|+|+ ||||..+.
T Consensus 3 ~~~l~~~---~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~~~p~~s~f~~~~~------------- 66 (212)
T 2bkr_A 3 PVVLSYM---DSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTS------------- 66 (212)
T ss_dssp CEEEEET---TEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCC-------------
T ss_pred CEEEEEC---CEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCCCCcEEEEChHHHHHHHhCC-------------
Confidence 3554444 5899999999999999999999999999999987655567899999 89995553
Q ss_pred HHHHHHHhhhcccCCCCCCeEEEEeec-------cCceEEEEEecCCCccccchhhccccCCCCeEEEEcCCCCcchhHH
Q 004112 433 AAFLRVRKWTRKVDIFGKDYIFIPVNF-------NLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLK 505 (773)
Q Consensus 433 ~~y~~VkrWtk~vdLFeKD~IfIPIN~-------nsHWsLlVIc~P~~~~~~~d~d~~~s~k~p~Il~fDSL~g~~~~v~ 505 (773)
.+++|++|++++++|++++||||||. +.||+|+||+.+. ++|+|||||++.+....
T Consensus 67 -~~~~v~~~~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~----------------~~i~~~DSl~~~n~~~~ 129 (212)
T 2bkr_A 67 -NPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDK----------------NSFFHYDSHSRSNSVHA 129 (212)
T ss_dssp -CHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGG----------------TEEEEECSSTTTTHHHH
T ss_pred -CHHHHHHHhcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecC----------------CeEEEEeCCCCCCHHHH
Confidence 15679999999999999999999995 7999999999864 58999999998876544
Q ss_pred HHHHHHHHHHHHHhccCCcccccccccceeeccCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhhcccccCCC
Q 004112 506 NLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDW 585 (773)
Q Consensus 506 ~~Lr~YL~~E~k~k~~~~~~D~ss~~~n~~~v~~~VPQQ~Ng~DCGVFVL~YaE~fl~~~P~~Ftq~dI~~~r~~l~~~W 585 (773)
..|..+|......+.. .+.+..+++|||.|++|||||||+||++++.+.... .. +....|
T Consensus 130 ~~l~~~l~~~l~~~~~-----------~~~~~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~-~~--------~~~~~~ 189 (212)
T 2bkr_A 130 KQVAEKLEAFLGRKGD-----------KLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQ-QT--------ESLLQL 189 (212)
T ss_dssp HHHHHHHHHHHSCTTC-----------CCCEEECCCCCCSSSSTHHHHHHHHHHHHHHHHHSC-CC--------CCHHHH
T ss_pred HHHHHHHHHHhCCccc-----------cceEeECCCCCCCCCCcHHHHHHHHHHHHHHHhhhc-Cc--------cccccc
Confidence 4444444443322111 112446789999999999999999999999873110 00 012468
Q ss_pred CCchhhHHHHHHHHHHHHHHHH
Q 004112 586 FPPGEASLKRSLIQKLISELLR 607 (773)
Q Consensus 586 F~p~eis~kR~~I~~LI~eL~e 607 (773)
|++.+++.+|++|+++|.+|.+
T Consensus 190 ~~~~~i~~~R~~i~~lI~~L~~ 211 (212)
T 2bkr_A 190 LTPAYITKKRGEWKDLIATLAK 211 (212)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999964
No 5
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=2.5e-37 Score=315.56 Aligned_cols=180 Identities=35% Similarity=0.597 Sum_probs=150.8
Q ss_pred CceEEehhhhhccCCCCCcCHHHHHHHHHHHHHhhcccccCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHHhhhc-
Q 004112 365 DAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTR- 443 (773)
Q Consensus 365 ~~VsLt~~DL~~L~pg~WLND~IIdFYL~yL~~~~~~~~~~rv~~FnSfFy~kL~~~~k~pssls~~~~~y~~VkrWtk- 443 (773)
+++.|+.+|+.+|.+++||||+||+||++||.+.. +++|+|+||||.+|.. .+|..|++|++
T Consensus 31 ~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~-----~~~~~f~s~f~~~l~~------------~~~~~v~rw~~~ 93 (221)
T 1euv_A 31 DNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-----PNTVAFNSFFYTNLSE------------RGYQGVRRWMKR 93 (221)
T ss_dssp TTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-----TTEEECCTHHHHHHHH------------HTGGGTTTTTGG
T ss_pred CCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-----CCeEEEEcHHHHHhhh------------hccHHHHHHHHh
Confidence 47999999999999999999999999999998653 5799999999999974 45888999997
Q ss_pred -ccCCCCCCeEEEEeecc-CceEEEEEecCCCccccchhhccccCCCCeEEEEcCCCCcc-h---hHHHHHHHHHHHHHH
Q 004112 444 -KVDIFGKDYIFIPVNFN-LHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTH-A---GLKNLVQSYLCEEWK 517 (773)
Q Consensus 444 -~vdLFeKD~IfIPIN~n-sHWsLlVIc~P~~~~~~~d~d~~~s~k~p~Il~fDSL~g~~-~---~v~~~Lr~YL~~E~k 517 (773)
++++|++++||||||.+ .||+|+||+.+. ++|+|||||++.+ . .+.+.|+.||..+++
T Consensus 94 ~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~----------------~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~e~~ 157 (221)
T 1euv_A 94 KKTQIDKLDKIFTPINLNQSHWALGIIDLKK----------------KTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK 157 (221)
T ss_dssp GTSCGGGCSEEEEEEEETTTEEEEEEEETTT----------------TEEEEECSSCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCcccCCEEEEEEEcCCCeEEEEEEEcCC----------------CEEEEEecCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 68999999999999985 999999999864 5899999998653 2 466788999998876
Q ss_pred HhccCCcccccccccceeeccCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhhcccccCCCCCchhhHHHHHH
Q 004112 518 ERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSL 597 (773)
Q Consensus 518 ~k~~~~~~D~ss~~~n~~~v~~~VPQQ~Ng~DCGVFVL~YaE~fl~~~P~~Ftq~dI~~~r~~l~~~WF~p~eis~kR~~ 597 (773)
.+.+. + +++..+++|||.|++|||||||+||++++.+.|+.| ++.++..+|..
T Consensus 158 ~~~~~-------~---~~~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l~f-----------------~~~d~~~~R~~ 210 (221)
T 1euv_A 158 HTIGE-------D---FDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDF-----------------DYKDAIRMRRF 210 (221)
T ss_dssp SSSCT-------T---CEEEEECCCCCSSSSTHHHHHHHHHHHHHTTCCCCC-----------------CHHHHHHHHHH
T ss_pred HhcCC-------C---ceEeecCCCCCCCCcCHHHHHHHHHHHHhCCCCCCc-----------------CHHHHHHHHHH
Confidence 54321 1 234567999999999999999999999999877654 45556678999
Q ss_pred HHHHHHH
Q 004112 598 IQKLISE 604 (773)
Q Consensus 598 I~~LI~e 604 (773)
|+.+|+.
T Consensus 211 i~~~Il~ 217 (221)
T 1euv_A 211 IAHLILT 217 (221)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9888864
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=100.00 E-value=8.4e-33 Score=275.81 Aligned_cols=179 Identities=17% Similarity=0.281 Sum_probs=129.0
Q ss_pred CCCCcCHHHHHHHHHHHHHhhccccc-CcEEEechHHHHHhhccCCCCCCcchhhHHHHHHHhhhcccCCCCCCeEEEEe
Q 004112 379 PDTFVNDTIIDFYIKYLKNQIQAEEK-HRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPV 457 (773)
Q Consensus 379 pg~WLND~IIdFYL~yL~~~~~~~~~-~rv~~FnSfFy~kL~~~~k~pssls~~~~~y~~VkrWtk~vdLFeKD~IfIPI 457 (773)
+++||||+||+||++||.++..+... .++|||+|+++..+... +...+.++++|++..++ +++|||||
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~---------~~~~~~~~~~~~~~~~~--~~~i~iPi 69 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSA---------DPDQQARAQRLLAGDDI--PPIVFLPI 69 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTSTTGGGEEECCHHHHHHTTCS---------SHHHHHHHHHHHHSTTS--CSEEEEEE
T ss_pred CCCCcChHHHHHHHHHHHHHhhhccCcceEEEECHHHHHHHHhC---------CHHHHHHHHHHcccccc--cCEEEEEE
Confidence 47899999999999999998754333 56999998876666432 12357788889887666 99999999
Q ss_pred ec-cCceEEEEEecCCCccccchhhccccCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHHHhccCCcccccccccceee
Q 004112 458 NF-NLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRF 536 (773)
Q Consensus 458 N~-nsHWsLlVIc~P~~~~~~~d~d~~~s~k~p~Il~fDSL~g~~~~v~~~Lr~YL~~E~k~k~~~~~~D~ss~~~n~~~ 536 (773)
|. +.||+|+||+.+.+ ..|+|+|||||++.+.. ...|...|.... +.. .. ++
T Consensus 70 n~~~~HWsLlvi~~~~~-------------~~~~~~~~DSl~~~~~~-~~~l~~~l~~~l----~~~-------~~--~~ 122 (186)
T 2oix_A 70 NQPNAHWSLLVVDRRNK-------------DAVAAYHYDSMAQKDPQ-QRYLADMAAYHL----GLD-------YQ--QT 122 (186)
T ss_dssp EETTTEEEEEEEECSST-------------TSCEEEEECCCSSCCHH-HHHHHHHHHHHT----TCC-------GG--GC
T ss_pred eCCCCccEEEEEECCCC-------------eeeeeEEEcCCCCCCHH-HHHHHHHHHHHh----CCC-------cc--cc
Confidence 98 89999999998764 23677999999986543 222222222111 110 00 13
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhhcccccCCCCCchhhHHHHHHHHHHHHHH
Q 004112 537 IPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSLIQKLISEL 605 (773)
Q Consensus 537 v~~~VPQQ~Ng~DCGVFVL~YaE~fl~~~P~~Ftq~dI~~~r~~l~~~WF~p~eis~kR~~I~~LI~eL 605 (773)
...++|||.|++|||||||+||+++++.. .. ..+ ....||++.+++.+|+.|+++|.++
T Consensus 123 ~~~~~PqQ~Ng~DCGvfv~~~~~~l~~~~-~~------~~~---~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 123 HEMPIAIQSDGYSAGDHVLTGIEVLAHRV-LD------GTF---DYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp EEECBCCCC--CCHHHHHHHHHHHHHHHH-HH------TCT---TSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHH-hh------cCc---cCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 35689999999999999999999998752 10 000 2346899999999999999999876
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=79.93 E-value=29 Score=34.73 Aligned_cols=127 Identities=15% Similarity=0.175 Sum_probs=67.8
Q ss_pred cCceEEEEEecCCCccccchhhccccCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHHHhccCCccccccccc-ceee-c
Q 004112 460 NLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFL-NFRF-I 537 (773)
Q Consensus 460 nsHWsLlVIc~P~~~~~~~d~d~~~s~k~p~Il~fDSL~g~~~~v~~~Lr~YL~~E~k~k~~~~~~D~ss~~~-n~~~-v 537 (773)
+.||.-...+ | +..+++.||.+|-+..++.+. -.-+|....+... +.+.-. =+++ .
T Consensus 52 GvHWiA~Aw~-P---------------~s~~~YmFDPfG~sd~~L~qi----Y~F~Y~~llkRSA--L~sspdRCv~Lvk 109 (204)
T 4ekf_A 52 GVHWMAFAWN-P---------------RSKTCYLFEPFGFSDQRLKQV----YQFEYESLLRRSA--IASSPDRCITLEK 109 (204)
T ss_dssp CCCEEEEEEE-T---------------TTTEEEEECTBTTCSHHHHHH----HHHHHHHHHHHHC--C--------EEEE
T ss_pred ceeEEEeEec-C---------------CcceEEEeCCCCCCHHHHHHH----hhhhHHHHHHHHh--hcCCCCceeEEEe
Confidence 4899888776 3 236899999999887765432 2233432111110 100000 0111 1
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhh-hhhhcccccCCCCCchhhHHHHHHHHHHHHHHHHhc
Q 004112 538 PLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLK-LKKLSSFLNVDWFPPGEASLKRSLIQKLISELLRNR 609 (773)
Q Consensus 538 ~~~VPQQ~Ng~DCGVFVL~YaE~fl~~~P~~Ftq~d-I~~~r~~l~~~WF~p~eis~kR~~I~~LI~eL~e~~ 609 (773)
..+.-|=.++--||+|-+.|+.+|..-+..-+.... |..+....+.....|......|..= +.+...+..+
T Consensus 110 stqsVQcp~SaACGLFC~lFL~aF~~~p~~pm~~Np~md~~~Gvp~~~l~~P~~~~~lh~NQ-e~LY~fl~~h 181 (204)
T 4ekf_A 110 STQSVQGPNSAAAGLFCCMFLHAFANWPQTPMDHNPTMNLITGVPNSMLNSPQVQPTLRRNQ-EQLYSFLERH 181 (204)
T ss_dssp CCSBCSCTTCCCHHHHHHHHHHHHHHCTTSCSSSSTTGGGCCCBCGGGTTCGGGHHHHHHHH-HHHHHHHHHH
T ss_pred ccccccCcCchhHHHHHHHHHHHHHhCCCCCCCCCCccccccCcCcccccCCcchHHHHHhH-HHHHHHHHhc
Confidence 234556668999999999999999986432232111 2222333344455676655555443 3344444444
No 8
>4agy_A VP1 protein; picornavirus, enterovirus, HEV-A; 6.09A {Human coxsackievirus A7} PDB: 4agx_A
Probab=9.09 E-value=1.4e+02 Score=29.46 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=21.3
Q ss_pred cceeEEeccCCCC-----------------ceeeeccCCCccccccCC
Q 004112 723 AEEYGYLAAGSNG-----------------FQQITELTPQVGSISFPS 753 (773)
Q Consensus 723 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 753 (773)
--|+||+|.|.+. |.+ .|-+|...||||.+
T Consensus 73 ~~QimyvPPGap~P~~~~~~~Wqs~tNPSvf~~-~g~~p~~~sIPF~s 119 (181)
T 4agy_A 73 ILQYMYAPPGAPLPTRRDSYEWQTSTNPSIISK-MADPPAQVSVPFLS 119 (181)
T ss_dssp EEEEEEECSSSCCCSCSSSSTTSCCSSCEEEEE-SSSCCCEEEECCSS
T ss_pred EEEEEECCCCCCCCCCccccccccCCCCeEEEe-cCCCCceEEeeccC
Confidence 3578888887663 323 56777889999875
No 9
>4gb3_1 Coat protein 1; capsid protein; HET: PLM MYR; 2.74A {Human coxsackievirus B3} PDB: 1cov_1* 1jew_1 1oop_A* 1mqt_A*
Probab=5.48 E-value=2.8e+02 Score=29.16 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=22.5
Q ss_pred ceeEEeccCCCC-----------------ceeeeccCCCccccccCCC
Q 004112 724 EEYGYLAAGSNG-----------------FQQITELTPQVGSISFPSR 754 (773)
Q Consensus 724 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 754 (773)
-|+||+|.|-+. |.+ .|=.|++.||||.+-
T Consensus 139 ~Q~MyvPPG~p~P~~~d~~~Wqs~tNPSVf~~-~g~~p~r~sIPFms~ 185 (281)
T 4gb3_1 139 HQIMYVPPGGPVPDKVDSYVWQTSTNPSVFWT-EGNAPPRMSIPFLSI 185 (281)
T ss_dssp EEEEEECTTSCCCSSTTCGGGGCSSSCEEEEE-TTSCCCEEEECCCCS
T ss_pred EEEEecCCCCCCCCCCCCCcccCCCCcceeee-cCCCCceeeecccCc
Confidence 499999988653 555 466788899998753
No 10
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=4.36 E-value=5.2e+02 Score=23.46 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=18.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHc
Q 004112 541 LPQQENSFDCGLFLLHYLELFLA 563 (773)
Q Consensus 541 VPQQ~Ng~DCGVFVL~YaE~fl~ 563 (773)
+-+|.+.+|||+-.|.++-.+..
T Consensus 8 ~~~Q~~~~dcglacLa~i~~~~g 30 (156)
T 3k8u_A 8 LVPQIDTRDCGPAVLASVAKHYG 30 (156)
T ss_dssp CCCCSSTTCHHHHHHHHHHHHTT
T ss_pred eEECCCCCCHHHHHHHHHHHHhC
Confidence 44688889999999998877654
Done!