BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004113
(773 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 430 bits (1106), Expect = e-120, Method: Compositional matrix adjust.
Identities = 263/654 (40%), Positives = 374/654 (57%), Gaps = 49/654 (7%)
Query: 108 TTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTR 167
TTRSWDFL +VP S ES+ ++G+LDTG+WPES SF+D+ P P +
Sbjct: 1 TTRSWDFLGFPL-----TVPRRS----QVESNIVVGVLDTGIWPESPSFDDEGFSPPPPK 51
Query: 168 WKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVV-ANGQSPRDMVGHGTHVASTAAGQAVQ 226
WKGTC N+ F CNRKIIGAR Y I + + PRD GHGTH ASTAAG V
Sbjct: 52 WKGTCETSNN---FRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVS 108
Query: 227 GASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGS 286
A+ YGL GTA GG P +RIA Y+VC + GC+ ++ILAA+DDAIADGVD++SLS+GG+
Sbjct: 109 QANLYGLGLGTARGGVPLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLSVGGA 167
Query: 287 AGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFE 346
R D IA+G+FHAVE GI SAGN GP+ + + +PW+ +VAAST+DR F
Sbjct: 168 N--PRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFV 225
Query: 347 SDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKG 406
+ + +G + +G SIN + Q YPL+ + +++ +R C S+ L+KG
Sbjct: 226 TQVQIGNGQSFQGVSINTFDNQ---YYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKG 282
Query: 407 KIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEIL 466
KIV+C+ + + KSL G +++ +R A SY P +V+ + L
Sbjct: 283 KIVVCE------ASFGPHEFFKSLDGAAGVLMTSNTRDYADSY-PLPSSVLDPNDLLATL 335
Query: 467 AYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWM 526
YI S R+P ATI + ++ AP + FS+RGP+ T++++KPDI+ PGV ILAAW
Sbjct: 336 RYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW- 393
Query: 527 GNDTGEAPEG--KEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
AP G + LFN+ISGTSMSCPHI+G+ +K NPT+SP+ IKSA+MTTA+
Sbjct: 394 ---PSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASP 450
Query: 585 TNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIK 644
N P + +G+G V+ +++PGLVY+ DY+ FLC GY+ ++
Sbjct: 451 MNARFNP--------QAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVR 502
Query: 645 MIATTIPKDFACPKDSGVDSISNINYPSIAVS-SFDGKEGRTISRTVTNVAGNNETIYTV 703
I D++ + ++NYPS +S S + +RT+T+VA T Y
Sbjct: 503 RIT----GDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQAST-YRA 557
Query: 704 AVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWSNGKY 757
+ APQGL + V P L F G + S+ +T ++ V S+ WS+G +
Sbjct: 558 MISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFV--VSASLVWSDGVH 609
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 328 bits (841), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 245/668 (36%), Positives = 343/668 (51%), Gaps = 52/668 (7%)
Query: 108 TTRSWDFLKIQTDVLIDSVPSPSL-NSQDQESDTIIGILDTGVWPESESFNDKDMGPIPT 166
TT + DFLK+ PS L + D I+ +LD+G+WPES SF D M IP
Sbjct: 1 TTHTSDFLKLN--------PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPK 52
Query: 167 RWKGTCNAGNDNVSFSCNRKIIGARFYD---IEDDVVAN--GQSPRDMVGHGTHVASTAA 221
RWKG C G + CNRK+IGA +++ + +D N S RD GHGTH AS A
Sbjct: 53 RWKGICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITA 112
Query: 222 GQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSL 281
G +G S++G A GTA G +P +R+AVY+ E G S+++AA D A+ADGVD++S+
Sbjct: 113 GNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE-GTFTSDLIAAMDQAVADGVDMISI 171
Query: 282 SLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTI 341
S G PL +D I++ +F A+ G+ V SAGN GP GS+ N +PWI VA+
Sbjct: 172 SYGYR---FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHT 228
Query: 342 DRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAG 401
DR F + LG I+G S+ F P+IY K+ +C + L
Sbjct: 229 DRTFAGTLTLGNGLKIRGWSL-FPARAFVRDSPVIYNKTLS----------DCSSEELLS 277
Query: 402 ALV--KGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISS 459
+ + IV+CD++ D D+ + I I + S+ P V++
Sbjct: 278 QVENPENTIVICDDNGDFS---DQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNK 334
Query: 460 KEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGV 519
KE +++ Y+ + P ATI + KPAP +A SARGPS I KPDI APGV
Sbjct: 335 KEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGV 394
Query: 520 NILAAWMGNDTGEAPEGKEPPL---FNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKS 576
ILAA+ N + G L + + SGTSM+ PH +G+ A +K +P +SPS I+S
Sbjct: 395 LILAAYPPNVFATS-IGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRS 453
Query: 577 AVMTTATQTNNLRAPIT-TNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCY 635
A+MTTA +N R PI +++ AATP D GAG V +L PGLVY+ T DY+N LC
Sbjct: 454 AMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCS 513
Query: 636 YGYDLSKIKMIATTIPKDFACPKDSGVDSISNINYPS-IAVSSFDGK---EGRTISRTVT 691
+ + K IA + C S +++NYPS IA+ S +G + RTVT
Sbjct: 514 LNFTEEQFKTIARS-SASHNCSNPS-----ADLNYPSFIALYSIEGNFTLLEQKFKRTVT 567
Query: 692 NVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSIT 751
NV G Y + AP+ + V P+ L F +K SY +T + GSIT
Sbjct: 568 NV-GKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSIT 626
Query: 752 W--SNGKY 757
W NG +
Sbjct: 627 WVEQNGNH 634
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 122/438 (27%), Positives = 185/438 (42%), Gaps = 94/438 (21%)
Query: 212 HGTHVASTAAGQA-VQGASYYGLAAGTAIGGSPGSRIAVYRV-CSPEYGCTGSNILAAFD 269
HGTHV+ +G A + Y L G P +++ + RV N A
Sbjct: 97 HGTHVSGILSGNAPSETKEPYRLE-----GAMPEAQLLLMRVEIVNGLADYARNYAQAIR 151
Query: 270 DAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAF-HAVEHGITVVCSAGNDG-------- 320
DA+ G V+++S G +A L D+ AF +A G+++V SAGND
Sbjct: 152 DAVNLGAKVINMSFGNAALAYANLPDE--TKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 209
Query: 321 -----PSSGSVVN--FAPWIFTVAASTIDRDF-ESDIVLGGNKVIKGESINFSN-LQKSP 371
P G V A TVA+ + D+ E+ V + K + +N + +
Sbjct: 210 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTDDHQAKEMPVLSTNRFEPNK 269
Query: 372 VYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGV---K 428
Y YA K+D ++ VKGKI L + D +D KD + K
Sbjct: 270 AYDYAYANRGMKEDDFKD--------------VKGKIALIERGD-----IDFKDKIANAK 310
Query: 429 SLGGVGVIVIDDQSRAV---ASSYGTFPLTVISSKEAAEILAYINSKR----NPVATILP 481
G VGV++ D+Q + + P IS K+ +L NSK+ N +LP
Sbjct: 311 KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG--LLLKDNSKKTITFNATPKVLP 368
Query: 482 TVSVTKYKPAPAIAYFSARGPSPLTRN-ILKPDITAPGVNILAAWMGNDTGEAPEGKEPP 540
T S TK ++ FS+ G LT + +KPDI APG +IL++ N
Sbjct: 369 TASDTK------LSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK----------- 408
Query: 541 LFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSE----IKSAVMTTATQTNNLRAPI 592
+ +SGTSMS P ++G++ ++ Q P +PSE K +M++AT A
Sbjct: 409 -YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSAT------ALY 461
Query: 593 TTNSGAAATPYDFGAGEV 610
+ A +P GAG V
Sbjct: 462 DEDEKAYFSPRQQGAGAV 479
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 116/454 (25%), Positives = 178/454 (39%), Gaps = 99/454 (21%)
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQA-VQGASYYGLAAGTAIGGSPGSRIAVYRV-CSP 255
D +G++ D HGTHV+ +G A + Y L G P +++ + RV
Sbjct: 75 DYSKDGKTAVDQ-EHGTHVSGILSGNAPSETKEPYRLE-----GAXPEAQLLLXRVEIVN 128
Query: 256 EYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAF-HAVEHGITVVC 314
N A DAI G V++ S G +A L D+ AF +A G+++V
Sbjct: 129 GLADYARNYAQAIRDAINLGAKVINXSFGNAALAYANLPDE--TKKAFDYAKSKGVSIVT 186
Query: 315 SAGNDGPSSG-------------------------SVVNFAP---WIFTVAASTIDRDFE 346
SAGND G +V +++P TV T D+ +
Sbjct: 187 SAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDK 246
Query: 347 SDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKG 406
VL N+ + + Y YA K+D ++ VKG
Sbjct: 247 EXPVLSTNR-----------FEPNKAYDYAYANRGTKEDDFKD--------------VKG 281
Query: 407 KIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV---ASSYGTFPLTVISSKEAA 463
KI L + D DK K G VGV++ D+Q + + P IS K+
Sbjct: 282 KIALIERGD--IDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFISRKDG- 338
Query: 464 EILAYINSKR----NPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRN-ILKPDITAPG 518
+L N ++ N +LPT S TK ++ FS+ G LT + +KPDI APG
Sbjct: 339 -LLLKDNPQKTITFNATPKVLPTASGTK------LSRFSSWG---LTADGNIKPDIAAPG 388
Query: 519 VNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAV 578
+IL++ N + +SGTS S P ++G+ ++ Q T P S
Sbjct: 389 QDILSSVANNK------------YAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPSER 436
Query: 579 MTTATQ--TNNLRAPITTNSGAAATPYDFGAGEV 610
+ A + ++ A + A +P GAG V
Sbjct: 437 LDLAKKVLXSSATALYDEDEKAYFSPRQQGAGAV 470
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 497 FSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHIS 556
FS+RGP+ R LKP++ APG I+AA + P + GT+M+ PH++
Sbjct: 312 FSSRGPTADNR--LKPEVVAPGNWIIAARASGTSMGQPIND---YYTAAPGTAMATPHVA 366
Query: 557 GVVAAIKHQNPTFSPSEIKSAVMTTA 582
G+ A + +P+++P ++K+A++ TA
Sbjct: 367 GIAALLLQAHPSWTPDKVKTALIETA 392
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 16/134 (11%)
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQ-AVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE 256
D V +P D GHGTHVAS AAG A Y G+A PG+++ +V + +
Sbjct: 166 DFVNGKTTPYDDNGHGTHVASIAAGTGAASNGKYKGMA--------PGAKLVGIKVLNGQ 217
Query: 257 YGCTGSNILAAFDDAIAD----GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITV 312
+ S+I+ D A+ + G+ V++LSLG S D ++ +A + G+ V
Sbjct: 218 GSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQ---SSDGTDSLSQAVNNAWDAGLVV 274
Query: 313 VCSAGNDGPSSGSV 326
V +AGN GP+ +V
Sbjct: 275 VVAAGNSGPNKYTV 288
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 10/71 (14%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
D+ APG +I +AW +DT ++GTSM+ PH++GV A QNP+ +P+
Sbjct: 196 DLFAPGASIPSAWYTSDTAT----------QTLNGTSMATPHVAGVAALYLEQNPSATPA 245
Query: 573 EIKSAVMTTAT 583
+ SA++ AT
Sbjct: 246 SVASAILNGAT 256
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI APGVN+ + + G+ + ++GTSM+ PH++GV A +K +NP++S
Sbjct: 191 DIVAPGVNVQSTYPGST------------YASLNGTSMATPHVAGVAALVKQKNPSWSNV 238
Query: 573 EIKSAVMTTATQTNN 587
+I++ + TAT N
Sbjct: 239 QIRNHLKNTATGLGN 253
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 10/71 (14%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI APG +I ++W +++ N ISGTSM+ PH++GV A +NP SP+
Sbjct: 198 DIYAPGSSITSSWYTSNSAT----------NTISGTSMASPHVAGVAALYLDENPNLSPA 247
Query: 573 EIKSAVMTTAT 583
++ + + T AT
Sbjct: 248 QVTNLLKTRAT 258
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 56/136 (41%), Gaps = 26/136 (19%)
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
D + N D GHGTHVA T G S YG+A + G RV +
Sbjct: 58 DFIDNDYDATDCNGHGTHVAGTI------GGSTYGVAKNVNVVG--------VRVLNCSG 103
Query: 258 GCTGSNILAAFD--DAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCS 315
+ S ++A + A G V ++SLGG A AV GIT V +
Sbjct: 104 SGSNSGVIAGINWVKNNASGPAVANMSLGGGA-------SQATDDAVNAAVAAGITFVVA 156
Query: 316 AGNDGPSSGSVVNFAP 331
AGND + + N++P
Sbjct: 157 AGND---NSNACNYSP 169
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 14/90 (15%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI APGVN+ + + G+ + ++GTSM+ PH++G A +K +NP++S
Sbjct: 191 DIVAPGVNVQSTYPGST------------YASLNGTSMATPHVAGAAALVKQKNPSWSNV 238
Query: 573 EIKSAVMTTATQ--TNNLRAPITTNSGAAA 600
+I++ + TAT + NL N+ AAA
Sbjct: 239 QIRNHLKNTATSLGSTNLYGSGLVNAEAAA 268
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI APGVN+ + + G+ + ++GTSM+ PH++G A +K +NP++S
Sbjct: 191 DIVAPGVNVQSTYPGST------------YASLNGTSMATPHVAGAAALVKQKNPSWSNV 238
Query: 573 EIKSAVMTTAT 583
+I++ + TAT
Sbjct: 239 QIRNHLKNTAT 249
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 205 SPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNI 264
S +D GHGTHVA T A + G+ +G +P + + +V + S+I
Sbjct: 55 STQDGNGHGTHVAGTIAAL----NNSIGV-----LGVAPSAELYAVKVLGADGRGAISSI 105
Query: 265 LAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS 323
+ A +G+ V +LSLG P + A G+ VV ++GN G SS
Sbjct: 106 AQGLEWAGNNGMHVANLSLG------SPSPSATLEQAVNSATSRGVLVVAASGNSGASS 158
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI APGVN+ + + G+ + ++GTSM+ PH++G A +K +NP++S
Sbjct: 191 DIVAPGVNVQSTYPGST------------YASLNGTSMATPHVAGAAALVKQKNPSWSNV 238
Query: 573 EIKSAVMTTAT 583
+I++ + TAT
Sbjct: 239 QIRNHLKNTAT 249
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI APGVN+ + + G+ + ++GTSM+ PH++G A +K +NP++S
Sbjct: 191 DIVAPGVNVQSTYPGST------------YASLNGTSMATPHVAGAAALVKQKNPSWSNV 238
Query: 573 EIKSAVMTTAT 583
+I++ + TAT
Sbjct: 239 QIRNHLKNTAT 249
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI APGVN+ + + G+ + ++GTSM+ PH++G A +K +NP++S
Sbjct: 191 DIVAPGVNVQSTYPGST------------YASLNGTSMATPHVAGAAALVKQKNPSWSNV 238
Query: 573 EIKSAVMTTAT 583
+I++ + TAT
Sbjct: 239 QIRNHLKNTAT 249
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 12/70 (17%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
+I+APG ++ + W +N ISGTSM+ PH+SG+ A I +NP+ S +
Sbjct: 226 EISAPGSSVYSTWYNGG------------YNTISGTSMATPHVSGLAAKIWAENPSLSNT 273
Query: 573 EIKSAVMTTA 582
+++S + A
Sbjct: 274 QLRSNLQERA 283
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 204 QSPRDMVGHGTHVASTA-AGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGS 262
S D GHGTHVA TA A A YG+A P + + Y+V
Sbjct: 63 NSCTDRNGHGTHVAGTALADGGSDQAGIYGVA--------PDADLWAYKVLLDSGSGYSD 114
Query: 263 NILAAF----DDAIADGVD-VLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 317
+I AA D A A G ++S+SLG SA + I+ +A G+ +V +AG
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGSSA------NNSLISSAVNYAYSKGVLIVAAAG 168
Query: 318 NDGPSSGSV 326
N G S G++
Sbjct: 169 NSGYSQGTI 177
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 14/90 (15%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI APGVN+ + + G+ + ++GT M+ PH++G A +K +NP++S
Sbjct: 191 DIVAPGVNVQSTYPGST------------YASLNGTXMATPHVAGAAALVKQKNPSWSNV 238
Query: 573 EIKSAVMTTATQ--TNNLRAPITTNSGAAA 600
+I++ + TAT + NL N+ AAA
Sbjct: 239 QIRNHLKNTATSLGSTNLYGSGLVNAEAAA 268
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI APGVN+ + + G+ + ++GT M+ PH++G A +K +NP++S
Sbjct: 191 DIVAPGVNVQSTYPGST------------YASLNGTXMATPHVAGAAALVKQKNPSWSNV 238
Query: 573 EIKSAVMTTAT 583
+I++ + TAT
Sbjct: 239 QIRNHLKNTAT 249
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 205 SPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNI 264
S +D GHGTHVA T A + G+ +G +P + + +V S+I
Sbjct: 55 STQDGNGHGTHVAGTIAAL----DNSIGV-----LGVAPSAELYAVKVLGASGSGAISSI 105
Query: 265 LAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS 323
+ A +G+ V +LSLG P + A G+ VV ++GN+G S
Sbjct: 106 AQGLEWAGNNGMHVANLSLG------SPSPSATLEQAVNSATSRGVLVVAASGNEGAGS 158
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI APGVN+ + + G+ + ++GT M+ PH++G A +K +NP++S
Sbjct: 191 DIVAPGVNVQSTYPGST------------YASLNGTXMATPHVAGAAALVKQKNPSWSNV 238
Query: 573 EIKSAVMTTAT 583
+I++ + TAT
Sbjct: 239 QIRNHLKNTAT 249
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI APGVN+ + + G+ + ++GT M+ PH++G A +K +NP++S
Sbjct: 191 DIVAPGVNVQSTYPGST------------YASLNGTXMATPHVAGAAALVKQKNPSWSNV 238
Query: 573 EIKSAVMTTAT 583
+I++ + TAT
Sbjct: 239 QIRNHLKNTAT 249
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 12/70 (17%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
+I+APG ++ + W +N ISGT M+ PH+SG+ A I +NP+ S +
Sbjct: 226 EISAPGSSVYSTWYNGG------------YNTISGTXMATPHVSGLAAKIWAENPSLSNT 273
Query: 573 EIKSAVMTTA 582
+++S + A
Sbjct: 274 QLRSNLQERA 283
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 204 QSPRDMVGHGTHVASTA-AGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGS 262
S D GHGTHVA TA A A YG+A P + + Y+V
Sbjct: 63 NSCTDRNGHGTHVAGTALADGGSDQAGIYGVA--------PDADLWAYKVLLDSGSGYSD 114
Query: 263 NILAAF----DDAIADGVD-VLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 317
+I AA D A A G ++S+SLG SA + I+ +A G+ +V +AG
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGSSA------NNSLISSAVNYAYSKGVLIVAAAG 168
Query: 318 NDGPSSGSV 326
N G S G++
Sbjct: 169 NSGYSQGTI 177
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 20/93 (21%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN G SGTSM+ PH
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTLPGNKYGAK------------SGTSMASPH 217
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNN 587
++G A I ++P ++ ++++S++ T T+ N
Sbjct: 218 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGN 250
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA GT + +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIIN 100
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 101 GIEWAIANNMDVINMSLGGPSG 122
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + P GK + +SGTSM+ PH
Sbjct: 178 APFSSVGP--------ELDVMAPGVSICSTL--------PGGK----YGALSGTSMASPH 217
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ TAT+
Sbjct: 218 VAGAAALILSKHPNWTNTQVRSSLENTATK 247
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 18/82 (21%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA GT + +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQASWIIN 100
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLG +G
Sbjct: 101 GIEWAIANNMDVINMSLGSPSG 122
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + P GK + +SGT+M+ PH
Sbjct: 178 APFSSVGP--------ELDVMAPGVSICSTL--------PGGK----YGALSGTAMASPH 217
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ TAT+
Sbjct: 218 VAGAAALILSKHPNWTNTQVRSSLENTATK 247
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 18/82 (21%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA GT + +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQASWIIN 100
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLG +G
Sbjct: 101 GIEWAIANNMDVINMSLGSPSG 122
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN G SGTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTLPGNKYG------------AYSGTSMASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTK 256
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA T A + G+ +G +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVAGTVAALD----NSIGV-----LGVAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 110 GIEWAIANNMDVINMSLGGPSG 131
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN G SGTSM+ PH
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTLPGNKYGAK------------SGTSMASPH 217
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 218 VAGAAALILSKHPNWTNTQVRSSLENTTTK 247
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA GT + +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIIN 100
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 101 GIEWAIANNMDVINMSLGGPSG 122
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN G SGTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTLPGNKYGAK------------SGTSMASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTK 256
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA T A + G+ +G +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVAGTVAALN----NSIGV-----LGVAPCASLYAVKVLGADGSGQYSWIIN 109
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 110 GIEWAIANNMDVINMSLGGPSG 131
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN G SGTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTLPGNKYGAK------------SGTSMASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTK 256
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA T A + G+ +G +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVAGTVAALD----NSIGV-----LGVAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 110 GIEWAIANNMDVINMSLGGPSG 131
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I++ GN G SGT+M+ PH
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVSTLPGNKYGAK------------SGTAMASPH 217
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 218 VAGAAALILSKHPNWTNTQVRSSLENTTTK 247
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA GT + +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIIN 100
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 101 GIEWAIANNMDVINMSLGGPSG 122
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 27/104 (25%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAA----------WMGNDTGEAPEGKEPPLFN 543
+A FS+RGP+ R +KPD+ APG IL+A W +D+ A G
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMG------- 252
Query: 544 VISGTSMSCPHISGVVAA-----IKHQNPTFSPSEIKSAVMTTA 582
GTSM+ P ++G VA +K++ T PS +K+A++ A
Sbjct: 253 ---GTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTG--SNIL 265
D GHGTHVA + G G++ G+A P + + + G G SN+
Sbjct: 64 DTNGHGTHVAGSVLGN---GSTNKGMA--------PQANLVFQSIMDSGGGLGGLPSNLQ 112
Query: 266 AAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGS 325
F A + G + + S G A + T D + + ++ +T++ +AGN+GP+ G+
Sbjct: 113 TLFSQAYSAGARIHTNSWG--AAVNGAYTTDSRNVDDY-VRKNDMTILFAAGNEGPNGGT 169
Query: 326 V 326
+
Sbjct: 170 I 170
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I++ GN G SGT+M+ PH
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVSTLPGNKYGAK------------SGTAMASPH 217
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 218 VAGAAALILSKHPNWTNTQVRSSLENTTTK 247
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA GT + +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIIN 100
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 101 GIEWAIANNMDVINMSLGGPSG 122
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 514 ITAPGVNILAAWMGNDT-GEAPEGKEPP-----LFNVISGTSMSCPHISGVVAAIKHQNP 567
+ APGV IL+ G D+ G + P ++ GTSM+ PH++GVVA + + P
Sbjct: 340 VGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFP 399
Query: 568 TFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQ 617
P +I+ + TA N +D G G V A+LQ
Sbjct: 400 NAKPWQIRKLLENTAFDFN-----------GNGWDHDTGYGLVKLDAALQ 438
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN G SGTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGNKYGAK------------SGTSMASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTK 256
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA T A + G+ +G +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVAGTVAALN----NSIGV-----LGVAPCASLYAVKVLGADGSGQYSWIIN 109
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 110 GIEWAIANNMDVINMSLGGPSG 131
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 20/89 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN G SGTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTLPGNKYG------------AYSGTSMASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583
++G A I ++P ++ ++++S++ T T
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTT 255
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA T A A+ + G+ +G +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVAGTVA--ALDNS--IGV-----LGVAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 110 GIEWAIANNMDVINMSLGGPSG 131
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN + +GTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGNK------------YGAYNGTSMASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLQNTTTK 256
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA T A A+ + G+ +G +P S + +V S I+
Sbjct: 59 QDDNSHGTHVAGTVA--ALNNS--IGV-----LGVAPSSALYAVKVLGDAGSGQYSWIIN 109
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 110 GIEWAIANNMDVINMSLGGPSG 131
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN + +GTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGNK------------YGAYNGTSMASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLQNTTTK 256
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA T A A+ + G+ +G +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVAGTVA--ALNNS--IGV-----LGVAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 110 GIEWAIANNMDVINMSLGGPSG 131
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 14/126 (11%)
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
D V N P D+ HGTHVA AA + G+A P +RI R
Sbjct: 58 DFVDNDYDPMDLNNHGTHVAGIAAAETNNATGIAGMA--------PNTRILAVRALDRNG 109
Query: 258 GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 317
T S+I A A G +V++LSLG + +A G VV +AG
Sbjct: 110 SGTLSDIADAIIYAADSGAEVINLSLGCDCHTT------TLENAVNYAWNKGSVVVAAAG 163
Query: 318 NDGPSS 323
N+G S+
Sbjct: 164 NNGSST 169
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 14/70 (20%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
D+ APGV+I++ GN + +SGTSM+ PH++G+ A + Q +
Sbjct: 202 DVVAPGVDIVSTITGN------------RYAYMSGTSMASPHVAGLAALLASQGR--NNI 247
Query: 573 EIKSAVMTTA 582
EI+ A+ TA
Sbjct: 248 EIRQAIEQTA 257
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN + +GTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGNK------------YGAYNGTSMASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTK 256
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA T A A+ + +G +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVAGTVA--ALNNSI-------GVLGVAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 110 GIEWAIANNMDVINMSLGGPSG 131
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query: 494 IAYFSARGPSPLTRN--ILKPD--ITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTS 549
+A FS+RG + I K D I+APG + + W D G A ISGTS
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWF--DGGYA----------TISGTS 249
Query: 550 MSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583
M+ PH +G+ A I Q+P S +++ + T A+
Sbjct: 250 MASPHAAGLAAKIWAQSPAASNVDVRGELQTRAS 283
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 18/144 (12%)
Query: 183 CNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGS 242
C +G F D S D GHGTHVA +A G+ YG+A
Sbjct: 51 CKDFTVGTNFTD---------NSCTDRQGHGTHVAGSALANGGTGSGVYGVA-------- 93
Query: 243 PGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGA 302
P + + Y+V + +I A A D L+ + + + I
Sbjct: 94 PEADLWAYKVLGDDGSGYADDIAEAIRHA-GDQATALNTKVVINMSLGSSGESSLITNAV 152
Query: 303 FHAVEHGITVVCSAGNDGPSSGSV 326
+A + G+ ++ +AGN GP GS+
Sbjct: 153 DYAYDKGVLIIAAAGNSGPKPGSI 176
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN + +GTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGNK------------YGAYNGTSMASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTK 256
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA T A A+ + G+ +G +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVAGTVA--ALNNS--IGV-----LGVAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 110 GIEWAIANNMDVINMSLGGPSG 131
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN G SGT M+ PH
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTLPGNKYGAK------------SGTXMASPH 217
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 218 VAGAAALILSKHPNWTNTQVRSSLENTTTK 247
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA GT + +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIIN 100
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 101 GIEWAIANNMDVINMSLGGPSG 122
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN + +GTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGNK------------YGAYNGTSMASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTK 256
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA T A A+ + G+ +G +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVAGTVA--ALNNS--IGV-----LGVAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 110 GIEWAIANNMDVINMSLGGPSG 131
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 12/72 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
++ APGV++ + + N + ++GTSM+ PH++G A I + PT S S
Sbjct: 196 EVMAPGVSVYSTYPSNT------------YTSLNGTSMASPHVAGAAALILSKYPTLSAS 243
Query: 573 EIKSAVMTTATQ 584
++++ + +TAT
Sbjct: 244 QVRNRLSSTATN 255
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 19/117 (16%)
Query: 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAA 267
D GHGTHVA T A A+ + +G +P + +V + + S I++
Sbjct: 59 DGNGHGTHVAGTVA--ALDNTT-------GVLGVAPNVSLYAIKVLNSSGSGSYSAIVSG 109
Query: 268 FDDAIADGVDVLSLSLGGSAG--IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPS 322
+ A +G+DV+++SLGG +G ++ D A GI VV +AGN G S
Sbjct: 110 IEWATQNGLDVINMSLGGPSGSTALKQAVDKAYA--------SGIVVVAAAGNSGNS 158
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN + SGT M+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGNK------------YGAYSGTXMASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTK 256
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA T A A+ + G+ +G +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVAGTVA--ALNNS--IGV-----LGVAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 110 GIEWAIANNMDVINMSLGGPSG 131
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN G SGT M+ PH
Sbjct: 175 ASFSSVGP--------ELDVMAPGVSIWSTLPGNKYGAK------------SGTXMASPH 214
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 215 VAGAAALILSKHPNWTNTQVRSSLENTTTK 244
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA GT + +P + + +V + S I+
Sbjct: 56 QDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIIN 97
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 98 GIEWAIANNMDVINMSLGGPSG 119
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN G SGT M+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGNKYG------------AYSGTXMASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTK 256
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA T A + G+ +G +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVAGTVAALN----NSIGV-----LGVAPCASLYAVKVLGADGSGQYSWIIN 109
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 110 GIEWAIANNMDVINMSLGGPSG 131
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN G SGT M+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGNKYGAK------------SGTXMASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTK 256
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA T A + G+ +G +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVAGTVAALN----NSIGV-----LGVAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 110 GIEWAIANNMDVINMSLGGPSG 131
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 12/50 (24%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAI 562
DI APG NIL+ W+G T N ISGTSM+ PHI G+ A +
Sbjct: 203 DIFAPGSNILSTWIGGTT------------NTISGTSMATPHIVGLGAYL 240
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 27/104 (25%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAA----------WMGNDTGEAPEGKEPPLFN 543
+A FS+RGP+ R +KPD+ APG IL+A W +D+ A G
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYXG------- 252
Query: 544 VISGTSMSCPHISGVVAA-----IKHQNPTFSPSEIKSAVMTTA 582
GTS + P ++G VA +K++ T PS +K+A++ A
Sbjct: 253 ---GTSXATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTG--SNIL 265
D GHGTHVA + G G++ G+A P + + + G G SN+
Sbjct: 64 DTNGHGTHVAGSVLGN---GSTNKGMA--------PQANLVFQSIMDSGGGLGGLPSNLQ 112
Query: 266 AAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGS 325
F A + G + + S G A + T D + + ++ +T++ +AGN+GP+ G+
Sbjct: 113 TLFSQAYSAGARIHTNSWG--AAVNGAYTTDSRNVDDY-VRKNDMTILFAAGNEGPNGGT 169
Query: 326 V 326
+
Sbjct: 170 I 170
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN + +GT M+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGNK------------YGAYNGTXMASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTK 256
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA T A A+ + G+ +G +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVAGTVA--ALNNS--IGV-----LGVAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 110 GIEWAIANNMDVINMSLGGPSG 131
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 86/218 (39%), Gaps = 61/218 (27%)
Query: 141 IIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVV 200
IIG++DTG + ++ +G + T + G D +FS N
Sbjct: 44 IIGVIDTGCQVDHPDLAERIIGGVNL----TTDYGGDETNFSDNN--------------- 84
Query: 201 ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCT 260
GHGTHVA T A A G+ G+A P + + + + S +
Sbjct: 85 ----------GHGTHVAGTVAA-AETGSGVVGVA--------PKADLFIIKALSGD---- 121
Query: 261 GSNILAAFDDAIADGVD----------VLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGI 310
GS + AI VD ++++SLGG P + + +AV + +
Sbjct: 122 GSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGG------PTDSEELHDAVKYAVSNNV 175
Query: 311 TVVCSAGNDGPSSGSVVNFA-PWIF--TVAASTIDRDF 345
+VVC+AGN+G FA P + +A +D D
Sbjct: 176 SVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDL 213
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ-----NP 567
DI APGV I + ++ D+G A +SGT+M+ PH++G +A I +
Sbjct: 226 DIVAPGVGIKSTYL--DSGYAE----------LSGTAMAAPHVAGALALIINLAEDAFKR 273
Query: 568 TFSPSEIKSAVMTTAT 583
+ S +EI + ++ AT
Sbjct: 274 SLSETEIYAQLVRRAT 289
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN + +GT M+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGNK------------YGAYNGTXMASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTK 256
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266
+D HGTHVA T A A+ + G+ +G +P + + +V + S I+
Sbjct: 59 QDNNSHGTHVAGTVA--ALNNS--IGV-----LGVAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 267 AFDDAIADGVDVLSLSLGGSAG 288
+ AIA+ +DV+++SLGG +G
Sbjct: 110 GIEWAIANNMDVINMSLGGPSG 131
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 513 DITAPGVNI-------LAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ 565
DIT P V++ L A +G T + +G + + +GTSM+ PH+SGV +
Sbjct: 328 DITVPSVSVDRATGLALKAKLGQSTTVSNQGNQD--YEYYNGTSMATPHVSGVATLVWSY 385
Query: 566 NPTFSPSEIKSAVMTTA 582
+P S S++++A+ TA
Sbjct: 386 HPECSASQVRAALNATA 402
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 20/148 (13%)
Query: 202 NGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSP--GSRIAVYRVCSPEYGC 259
N P + HGTHVA T A A +G P + I + +V +
Sbjct: 55 NWYQPGNNNAHGTHVAGTIAAIANNEG---------VVGVMPNQNANIHIVKVFNEAGWG 105
Query: 260 TGSNILAAFDDAI-ADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGN 318
S+++AA D + + G +V+++SLGGS T + AL + +G+ ++ +AGN
Sbjct: 106 YSSSLVAAIDTCVNSGGANVVTMSLGGSG----STTTERNALNTHY--NNGVLLIAAAGN 159
Query: 319 DGPSSGSVVNFAPWIFTVAASTIDRDFE 346
G SS S + +VAA +D + +
Sbjct: 160 AGDSSYSYPASYDSVMSVAA--VDSNLD 185
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 86/218 (39%), Gaps = 61/218 (27%)
Query: 141 IIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVV 200
IIG++DTG + ++ +G + T + G D +FS N
Sbjct: 26 IIGVIDTGCQVDHPDLAERIIGGVNL----TTDYGGDETNFSDNN--------------- 66
Query: 201 ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCT 260
GHGTHVA T A A G+ G+A P + + + + S +
Sbjct: 67 ----------GHGTHVAGTVAA-AETGSGVVGVA--------PKADLFIIKALSGD---- 103
Query: 261 GSNILAAFDDAIADGVD----------VLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGI 310
GS + AI VD ++++SLGG P + + +AV + +
Sbjct: 104 GSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGG------PTDSEELHDAVKYAVSNNV 157
Query: 311 TVVCSAGNDGPSSGSVVNFA-PWIF--TVAASTIDRDF 345
+VVC+AGN+G FA P + +A +D D
Sbjct: 158 SVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDL 195
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 17/86 (19%)
Query: 503 SPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAI 562
S T + DI APGV I + ++ D+G A +SGT+M+ PH++G +A I
Sbjct: 198 SDFTNTNEEIDIVAPGVGIKSTYL--DSGYAE----------LSGTAMAAPHVAGALALI 245
Query: 563 KHQ-----NPTFSPSEIKSAVMTTAT 583
+ + S +EI + ++ AT
Sbjct: 246 INLAEDAFKRSLSETEIYAQLVRRAT 271
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 15/81 (18%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPL---FNVISGTSMSCPHISG----VVAAIKHQ 565
D+ APG +IL+ G P+ ++ ++GTSM+ PH+SG V++A
Sbjct: 245 DLAAPGQDILST--------VDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSV 296
Query: 566 NPTFSPSEIKSAVMTTATQTN 586
N +P+E+K +++T + N
Sbjct: 297 NKNLTPAELKDVLVSTTSPFN 317
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
D+ APG I +AW D G + ISGTSM+ PH++GV A +N +P
Sbjct: 196 DLFAPGSQIKSAWY--DGG----------YKTISGTSMATPHVAGVAALYLQENNGLTPL 243
Query: 573 EIKSAVMTTATQTNNLRAPITTN 595
++ + + A++ TTN
Sbjct: 244 QLTGLLNSRASENKVSDTRGTTN 266
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 23/123 (18%)
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
D V N D GHGTHVA T G S YG+A I G RV S
Sbjct: 56 DFVDNDADSSDCNGHGTHVAGTI------GGSQYGVAKNVNIVG--------VRVLSCSG 101
Query: 258 GCTGSNILAAFDDAI--ADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCS 315
T S +++ D A G V ++SLGG + D G A++ G++ + +
Sbjct: 102 SGTTSGVISGVDWVAQNASGPSVANMSLGGG----QSTALDSAVQG---AIQSGVSFMLA 154
Query: 316 AGN 318
AGN
Sbjct: 155 AGN 157
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 15/81 (18%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPL---FNVISGTSMSCPHISG----VVAAIKHQ 565
D+ APG +IL+ G P+ ++ ++GTSM+ PH+SG V++A
Sbjct: 245 DLAAPGQDILST--------VDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSV 296
Query: 566 NPTFSPSEIKSAVMTTATQTN 586
N +P+E+K +++T + N
Sbjct: 297 NKNLTPAELKDVLVSTTSPFN 317
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 15/81 (18%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPL---FNVISGTSMSCPHISG----VVAAIKHQ 565
D+ APG +IL+ G P+ ++ ++GTSM+ PH+SG V++A
Sbjct: 245 DLAAPGQDILST--------VDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSV 296
Query: 566 NPTFSPSEIKSAVMTTATQTN 586
N +P+E+K +++T + N
Sbjct: 297 NKNLTPAELKDVLVSTTSPFN 317
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 12/48 (25%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVA 560
DI APG +I + W+G T N ISGTSM+ PHI+G+ A
Sbjct: 201 DIFAPGTSITSTWIGGRT------------NTISGTSMATPHIAGLAA 236
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 20/90 (22%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
A FS+ GP + D+ APGV+I + GN + +GTS + PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGNK------------YGAYNGTSXASPH 226
Query: 555 ISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
++G A I ++P ++ ++++S++ T T+
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTK 256
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 503 SPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISG----V 558
+P + + + APG NIL+ D G+A G + + +GTSM+ PH+SG V
Sbjct: 236 APFSNYGARVHLAAPGTNILSTI---DVGQA--GPVRSSYGMKAGTSMAAPHVSGVAALV 290
Query: 559 VAAIKHQNPTFSPSEIKSAVMTTATQTN 586
++A T +PSE+ ++ T ++ N
Sbjct: 291 ISAANSIGKTLTPSELSDILVRTTSRFN 318
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 503 SPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVA-- 560
+P + + + APG NIL+ D G+A G + + +GTSM+ PH+SGV A
Sbjct: 236 APFSNYGARVHLAAPGTNILSTI---DVGQA--GPVRSSYGMKAGTSMAAPHVSGVAALV 290
Query: 561 --AIKHQNPTFSPSEIKSAVMTTATQTN 586
A T +PSE+ ++ T ++ N
Sbjct: 291 ISAANSIGKTLTPSELSDILVRTTSRFN 318
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
D+ APGV+I + G + +GTSM+ PH++G A I ++PT++ +
Sbjct: 197 DVMAPGVSIQSTLPGGT------------YGAYNGTSMATPHVAGAAALILSKHPTWTNA 244
Query: 573 EIKSAVMTTAT 583
+++ + +TAT
Sbjct: 245 QVRDRLESTAT 255
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 26/139 (18%)
Query: 189 GARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIA 248
GA F E + +G S HGTHVA T A A+ + G+ +G +P + +
Sbjct: 47 GASFVPSETNPYQDGSS------HGTHVAGTIA--ALNNS--IGV-----LGVAPSASLY 91
Query: 249 VYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG--IVRPLTDDPIALGAFHAV 306
+V S I+ + AI++ +DV+++SLGG G ++ + D AV
Sbjct: 92 AVKVLDSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTVVDK--------AV 143
Query: 307 EHGITVVCSAGNDGPSSGS 325
GI V +AGN+G SSGS
Sbjct: 144 SSGIVVAAAAGNEG-SSGS 161
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
++ APG + + + N + ++GTSM+ PH++G A I ++P S S
Sbjct: 196 EVMAPGAGVYSTYPTNT------------YATLNGTSMASPHVAGAAALILSKHPNLSAS 243
Query: 573 EIKSAVMTTAT 583
++++ + +TAT
Sbjct: 244 QVRNRLSSTAT 254
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
++ APG + + + N + ++GTSM+ PH++G A I ++P S S
Sbjct: 196 EVMAPGAGVYSTYPTNT------------YATLNGTSMASPHVAGAAALILSKHPNLSAS 243
Query: 573 EIKSAVMTTAT 583
++++ + +TAT
Sbjct: 244 QVRNRLSSTAT 254
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
++ APG + + + N + ++GTSM+ PH++G A I ++P S S
Sbjct: 196 EVMAPGAGVYSTYPTNT------------YATLNGTSMASPHVAGAAALILSKHPNLSAS 243
Query: 573 EIKSAVMTTAT 583
++++ + +TAT
Sbjct: 244 QVRNRLSSTAT 254
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 12/75 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
D+ APGV+I + G G +N GT M+ PH++G A I ++PT++ +
Sbjct: 197 DVMAPGVSIQSTLPGGTYGA---------YN---GTXMATPHVAGAAALILSKHPTWTNA 244
Query: 573 EIKSAVMTTATQTNN 587
+++ + +TAT N
Sbjct: 245 QVRDRLESTATYLGN 259
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 26/139 (18%)
Query: 189 GARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIA 248
GA F E + +G S HGTHVA T A A+ + G+ +G +P + +
Sbjct: 47 GASFVPSETNPYQDGSS------HGTHVAGTIA--ALNNS--IGV-----LGVAPSASLY 91
Query: 249 VYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG--IVRPLTDDPIALGAFHAV 306
+V S I+ + AI++ +DV+++SLGG G ++ + D AV
Sbjct: 92 AVKVLDSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTVVDK--------AV 143
Query: 307 EHGITVVCSAGNDGPSSGS 325
GI V +AGN+G SSGS
Sbjct: 144 SSGIVVAAAAGNEG-SSGS 161
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
++ APG + + + N + ++GTSM+ PH++G A I ++P S S
Sbjct: 197 EVMAPGAGVYSTYPTNT------------YATLNGTSMASPHVAGAAALILSKHPNLSAS 244
Query: 573 EIKSAVMTTAT 583
++++ + +TAT
Sbjct: 245 QVRNRLSSTAT 255
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
++ APG + + + N + ++GTSM+ PH++G A I ++P S S
Sbjct: 197 EVMAPGAGVYSTYPTNT------------YATLNGTSMASPHVAGAAALILSKHPNLSAS 244
Query: 573 EIKSAVMTTAT 583
++++ + +TAT
Sbjct: 245 QVRNRLSSTAT 255
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
++ APG + + + N + ++GTSM+ PH++G A I ++P S S
Sbjct: 196 EVMAPGAGVYSTYPTNT------------YATLNGTSMASPHVAGAAALILSKHPNLSAS 243
Query: 573 EIKSAVMTTAT 583
++++ + +TAT
Sbjct: 244 QVRNRLSSTAT 254
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI PG +IL+ W+G T ISGTSM+ PH++G+ A + T + S
Sbjct: 200 DIFGPGTDILSTWIGGST------------RSISGTSMATPHVAGLAAYLMTLGKTTAAS 247
Query: 573 EIK 575
+
Sbjct: 248 ACR 250
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
D+ APGV+I + G + +GT M+ PH++G A I ++PT++ +
Sbjct: 197 DVMAPGVSIQSTLPGGT------------YGAYNGTCMATPHVAGAAALILSKHPTWTNA 244
Query: 573 EIKSAVMTTATQTNN 587
+++ + +TAT N
Sbjct: 245 QVRDRLESTATYLGN 259
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 26/139 (18%)
Query: 189 GARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIA 248
GA F E + +G S HGTHVA T A A+ + G+ +G SP + +
Sbjct: 47 GASFVPSETNPYQDGSS------HGTHVAGTIA--ALNNS--IGV-----LGVSPSASLY 91
Query: 249 VYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG--IVRPLTDDPIALGAFHAV 306
+V S I+ + AI++ +DV+++SLGG G ++ + D AV
Sbjct: 92 AVKVLDSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTVVDK--------AV 143
Query: 307 EHGITVVCSAGNDGPSSGS 325
GI V +AGN+G SSGS
Sbjct: 144 SSGIVVAAAAGNEG-SSGS 161
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 543 NVISGTSMSCPHISGVVA----AIKHQNPTFSPSEIKSAVMTTATQ 584
+ +GTS + PH++G VA +K QN +SP IK A+ TAT+
Sbjct: 456 QLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATK 501
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI PG +IL+ W+G T ISGTSM+ PH++G+ A + T + S
Sbjct: 200 DIFGPGTSILSTWIGGST------------RSISGTSMATPHVAGLAAYLMTLGKTTAAS 247
Query: 573 EIK 575
+
Sbjct: 248 ACR 250
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI PG +IL+ W+G T ISGTSM+ PH++G+ A + T + S
Sbjct: 200 DIFGPGTSILSTWIGGST------------RSISGTSMATPHVAGLAAYLMTLGKTTAAS 247
Query: 573 EIK 575
+
Sbjct: 248 ACR 250
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 22/70 (31%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
IA FS R +P+++APGV+IL+ + P+ + + GT+M+ P
Sbjct: 213 IASFSNR----------QPEVSAPGVDILSTY--------PDDS----YETLMGTAMATP 250
Query: 554 HISGVVAAIK 563
H+SGVVA I+
Sbjct: 251 HVSGVVALIQ 260
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 58/151 (38%), Gaps = 35/151 (23%)
Query: 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAA 267
D GHGTHV T A + G+ +G +PG +I RV + S+I
Sbjct: 71 DQNGHGTHVIGTIAAL----NNDIGV-----VGVAPGVQIYSVRVLDARGSGSYSDIAIG 121
Query: 268 FDDAIA--------------------DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVE 307
+ AI D +V+S+SLGG P D + A
Sbjct: 122 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGG------PADDSYLYDMIIQAYN 175
Query: 308 HGITVVCSAGNDGPSSGSVVNFAPWIFTVAA 338
GI +V ++GN+G S S P + V A
Sbjct: 176 AGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 206
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 22/70 (31%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
IA FS R +P+++APGV+IL+ + P+ + + GT+M+ P
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTY--------PDDS----YETLMGTAMATP 248
Query: 554 HISGVVAAIK 563
H+SGVVA I+
Sbjct: 249 HVSGVVALIQ 258
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 58/151 (38%), Gaps = 35/151 (23%)
Query: 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAA 267
D GHGTHV T A + G+ +G +PG +I RV + S+I
Sbjct: 69 DQNGHGTHVIGTIAAL----NNDIGV-----VGVAPGVQIYSVRVLDARGSGSYSDIAIG 119
Query: 268 FDDAIA--------------------DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVE 307
+ AI D +V+S+SLGG P D + A
Sbjct: 120 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGG------PADDSYLYDMIIQAYN 173
Query: 308 HGITVVCSAGNDGPSSGSVVNFAPWIFTVAA 338
GI +V ++GN+G S S P + V A
Sbjct: 174 AGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 22/70 (31%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
IA FS R +P+++APGV+IL+ + P+ + + GT+M+ P
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY--------PDDS----YETLMGTAMATP 328
Query: 554 HISGVVAAIK 563
H+SGVVA I+
Sbjct: 329 HVSGVVALIQ 338
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 58/151 (38%), Gaps = 35/151 (23%)
Query: 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAA 267
D GHGTHV T A + G+ +G +PG +I RV + S+I
Sbjct: 149 DQNGHGTHVIGTIAAL----NNDIGV-----VGVAPGVQIYSVRVLDARGSGSYSDIAIG 199
Query: 268 FDDAIA--------------------DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVE 307
+ AI D +V+S+SLGG P D + A
Sbjct: 200 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGG------PADDSYLYDMIIQAYN 253
Query: 308 HGITVVCSAGNDGPSSGSVVNFAPWIFTVAA 338
GI +V ++GN+G S S P + V A
Sbjct: 254 AGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 22/70 (31%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
IA FS R +P+++APGV+IL+ + P+ + + GT+M+ P
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTY--------PDDS----YETLMGTAMATP 259
Query: 554 HISGVVAAIK 563
H+SGVVA I+
Sbjct: 260 HVSGVVALIQ 269
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 58/151 (38%), Gaps = 35/151 (23%)
Query: 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAA 267
D GHGTHV T A + G+ +G +PG +I RV + S+I
Sbjct: 80 DQNGHGTHVIGTIAAL----NNDIGV-----VGVAPGVQIYSVRVLDARGSGSYSDIAIG 130
Query: 268 FDDAIA--------------------DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVE 307
+ AI D +V+S+SLGG P D + A
Sbjct: 131 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGG------PADDSYLYDMIIQAYN 184
Query: 308 HGITVVCSAGNDGPSSGSVVNFAPWIFTVAA 338
GI +V ++GN+G S S P + V A
Sbjct: 185 AGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 215
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 22/70 (31%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
IA FS R +P+++APGV+IL+ + P+ + + GT+M+ P
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY--------PDDS----YETLMGTAMATP 328
Query: 554 HISGVVAAIK 563
H+SGVVA I+
Sbjct: 329 HVSGVVALIQ 338
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 58/151 (38%), Gaps = 35/151 (23%)
Query: 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAA 267
D GHGTHV T A + G+ +G +PG +I RV + S+I
Sbjct: 149 DQNGHGTHVIGTIAAL----NNDIGV-----VGVAPGVQIYSVRVLDARGSGSYSDIAIG 199
Query: 268 FDDAIA--------------------DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVE 307
+ AI D +V+S+SLGG P D + A
Sbjct: 200 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGG------PADDSYLYDMIIQAYN 253
Query: 308 HGITVVCSAGNDGPSSGSVVNFAPWIFTVAA 338
GI +V ++GN+G S S P + V A
Sbjct: 254 AGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 22/70 (31%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
IA FS R +P+++APGV+IL+ + P+ + + GT+M+ P
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY--------PDDS----YETLMGTAMATP 328
Query: 554 HISGVVAAIK 563
H+SGVVA I+
Sbjct: 329 HVSGVVALIQ 338
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 59/151 (39%), Gaps = 35/151 (23%)
Query: 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAA 267
D GHGTHV T A + G+ +G +PG +I RV + S+I
Sbjct: 149 DQNGHGTHVIGTIAAL----NNDIGV-----VGVAPGVQIYSVRVLDARGSGSYSDIAIG 199
Query: 268 FDDAI--------------------ADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVE 307
+ AI AD +V+S+SLGG P D + A
Sbjct: 200 IEQAILGPDGVADKDGDGIIAGDPDADAAEVISMSLGG------PADDSYLYDMIIQAYN 253
Query: 308 HGITVVCSAGNDGPSSGSVVNFAPWIFTVAA 338
GI +V ++GN+G S S P + V A
Sbjct: 254 AGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 22/70 (31%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
IA FS R +P+++APGV+IL+ + P+ + + GT+M+ P
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY--------PDDS----YETLMGTAMATP 328
Query: 554 HISGVVAAIK 563
H+SGVVA I+
Sbjct: 329 HVSGVVALIQ 338
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 35/151 (23%)
Query: 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAA 267
D GHGTHV T A + G+ +G +PG +I RV + S+I
Sbjct: 149 DQNGHGTHVIGTIAAL----NNDIGV-----VGVAPGVQIYSVRVLDARGSGSYSDIAIG 199
Query: 268 FDDAI----------ADGV----------DVLSLSLGGSAGIVRPLTDDPIALGAFHAVE 307
+ AI DG+ +V+S+SLGG P D + A
Sbjct: 200 IEQAILGPDGVADKDGDGIIAGDPDDAAAEVISMSLGG------PADDSYLYDMIIQAYN 253
Query: 308 HGITVVCSAGNDGPSSGSVVNFAPWIFTVAA 338
GI +V ++GN+G S S P + V A
Sbjct: 254 AGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 22/70 (31%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
IA FS R +P+++APGV+IL+ + P+ + + GT+M+ P
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTY--------PDDS----YETLMGTAMATP 259
Query: 554 HISGVVAAIK 563
H+SGVVA I+
Sbjct: 260 HVSGVVALIQ 269
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 57/145 (39%), Gaps = 23/145 (15%)
Query: 208 DMVGHGTHVASTAAG--------QAVQGASYYGLAAGTAIGGSPGSRIAV---YRVCSPE 256
D GHGTHV T A G Y + A G S IA+ + P+
Sbjct: 80 DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIAQAILGPD 139
Query: 257 YGCT---GSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVV 313
G G I+A D D +V+S+SLGG P D + A GI +V
Sbjct: 140 -GVADKDGDGIIAG--DPDDDAAEVISMSLGG------PADDSYLYDMIIQAYNAGIVIV 190
Query: 314 CSAGNDGPSSGSVVNFAPWIFTVAA 338
++GN+G S S P + V A
Sbjct: 191 AASGNEGAPSPSYPAAYPEVIAVGA 215
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 22/70 (31%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
IA FS R +P+++APGV+IL+ + P+ + + GT+M+ P
Sbjct: 288 IASFSNR----------QPEVSAPGVDILSTY--------PDDS----YETLMGTAMATP 325
Query: 554 HISGVVAAIK 563
H+SGVVA I+
Sbjct: 326 HVSGVVALIQ 335
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 58/151 (38%), Gaps = 35/151 (23%)
Query: 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAA 267
D GHGTHV T A + G+ +G +PG +I RV + S+I
Sbjct: 146 DQNGHGTHVIGTIAAL----NNDIGV-----VGVAPGVQIYSVRVLDARGSGSYSDIAIG 196
Query: 268 FDDAIA--------------------DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVE 307
+ AI D +V+S+SLGG P D + A
Sbjct: 197 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGG------PADDSYLYDMIIQAYN 250
Query: 308 HGITVVCSAGNDGPSSGSVVNFAPWIFTVAA 338
GI +V ++GN+G S S P + V A
Sbjct: 251 AGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 281
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 22/70 (31%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
IA FS R +P+++APGV+IL+ + P+ + + GT M+ P
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTY--------PDDS----YETLMGTXMATP 248
Query: 554 HISGVVAAIK 563
H+SGVVA I+
Sbjct: 249 HVSGVVALIQ 258
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 58/151 (38%), Gaps = 35/151 (23%)
Query: 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAA 267
D GHGTHV T A + G+ +G +PG +I RV + S+I
Sbjct: 69 DQNGHGTHVIGTIAAL----NNDIGV-----VGVAPGVQIYSVRVLDARGSGSYSDIAIG 119
Query: 268 FDDAIA--------------------DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVE 307
+ AI D +V+S+SLGG P D + A
Sbjct: 120 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGG------PADDSYLYDMIIQAYN 173
Query: 308 HGITVVCSAGNDGPSSGSVVNFAPWIFTVAA 338
GI +V ++GN+G S S P + V A
Sbjct: 174 AGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
++ APG + + + N + ++GT M+ PH++G A I ++P S S
Sbjct: 196 EVMAPGAGVYSTYPTNT------------YATLNGTXMASPHVAGAAALILSKHPNLSAS 243
Query: 573 EIKSAVMTTAT 583
++++ + +TAT
Sbjct: 244 QVRNRLSSTAT 254
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 22/70 (31%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
IA FS R +P+++APGV+IL+ + P+ + + GT M+ P
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTY--------PDDS----YETLMGTCMATP 248
Query: 554 HISGVVAAIK 563
H+SGVVA I+
Sbjct: 249 HVSGVVALIQ 258
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 73/207 (35%), Gaps = 51/207 (24%)
Query: 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAA 267
D GHGTHV T A + G+ +G +PG +I RV + S+I
Sbjct: 69 DQNGHGTHVIGTIAAL----NNDIGV-----VGVAPGVQIYSVRVLDARGSGSYSDIAIG 119
Query: 268 FDDAIA--------------------DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVE 307
+ AI D +V+S+SLGG P D + A
Sbjct: 120 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGG------PADDSYLYDMIIQAYN 173
Query: 308 HGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNL 367
GI +V ++GN+G S S P + V A + + S FSN
Sbjct: 174 AGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIAS----------------FSNR 217
Query: 368 QKSPVYPLIYAKSAKKDDANENAARNC 394
Q P + S DD+ E C
Sbjct: 218 QPEVSAPGVDILSTYPDDSYETLMGTC 244
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 50/196 (25%)
Query: 141 IIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVV 200
IIG++DTG + ++ +G + T + G D +FS N
Sbjct: 44 IIGVIDTGXQVDHPDLAERIIGGVNL----TTDYGGDETNFSDNN--------------- 84
Query: 201 ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVC----SPE 256
GHGTHVA T A A G+ G+A P + + + + S E
Sbjct: 85 ----------GHGTHVAGTVAA-AETGSGVVGVA--------PKADLFIIKALSGDGSGE 125
Query: 257 YGCTGSNILAAFD--DAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVC 314
G I A D + + ++++SLGG P + + +AV + ++VV
Sbjct: 126 MGWIAKAIRYAVDWRGPKGEQMRIITMSLGG------PTDSEELHDAVKYAVSNNVSVVX 179
Query: 315 SAGNDGPSSGSVVNFA 330
+AGN+G FA
Sbjct: 180 AAGNEGDGREDTNEFA 195
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ-----NP 567
DI APGV I + ++ D+G A +SGT+M+ PH++G +A I +
Sbjct: 226 DIVAPGVGIKSTYL--DSGYAE----------LSGTAMAAPHVAGALALIINLAEDAFKR 273
Query: 568 TFSPSEIKSAVMTTAT 583
+ S +EI + ++ AT
Sbjct: 274 SLSETEIYAQLVRRAT 289
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 85/219 (38%), Gaps = 61/219 (27%)
Query: 141 IIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVV 200
IIG++DTG + ++ +G + T + G D +FS N
Sbjct: 44 IIGVIDTGCQVDHPDLAERIIGGVNL----TTDYGGDETNFSDNN--------------- 84
Query: 201 ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCT 260
GHGTHVA T A A G+ G+A P + + + + S +
Sbjct: 85 ----------GHGTHVAGTVAA-AETGSGVVGVA--------PKADLFIIKALSGD---- 121
Query: 261 GSNILAAFDDAIADGVD----------VLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGI 310
GS + AI VD ++++SLGG P + + +AV + +
Sbjct: 122 GSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGG------PTDSEELHDAVKYAVSNNV 175
Query: 311 TVVCSAGNDGPSSGSVVNFA-PWIF--TVAASTIDRDFE 346
+VV +AGN+G FA P + +A +D D
Sbjct: 176 SVVXAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLR 214
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ-----NP 567
DI APGV I + ++ D+G A +SGT+M+ PH++G +A I +
Sbjct: 226 DIVAPGVGIKSTYL--DSGYAE----------LSGTAMAAPHVAGALALIINLAEDAFKR 273
Query: 568 TFSPSEIKSAVMTTAT 583
+ S +EI + ++ AT
Sbjct: 274 SLSETEIYAQLVRRAT 289
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGS-PGSRIAVYRVCSPE 256
D V N +P++ GHGTH A AA AV S T I G+ P + I RV
Sbjct: 57 DFVDNDSTPQNGNGHGTHCAGIAA--AVTNNS-------TGIAGTAPKASILAVRVLDNS 107
Query: 257 YGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288
T + + A G V+SLSLGG+ G
Sbjct: 108 GSGTWTAVANGITYAADQGAKVISLSLGGTVG 139
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 545 ISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTA 582
+SGTSM+ PH++GV + Q S S I++A+ TA
Sbjct: 221 LSGTSMATPHVAGVAGLLASQG--RSASNIRAAIENTA 256
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGS-PGSRIAVYRVCSPE 256
D V N +P++ GHGTH A AA AV S T I G+ P + I RV
Sbjct: 57 DFVDNDSTPQNGNGHGTHCAGIAA--AVTNNS-------TGIAGTAPKASILAVRVLDNS 107
Query: 257 YGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288
T + + A G V+SLSLGG+ G
Sbjct: 108 GSGTWTAVANGITYAADQGAKVISLSLGGTVG 139
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
D+ APG +I + + + +SGTSM+ PH++GV + Q S S
Sbjct: 201 DVAAPGSSIYSTY------------PTSTYASLSGTSMATPHVAGVAGLLASQG--RSAS 246
Query: 573 EIKSAVMTTA 582
I++A+ TA
Sbjct: 247 NIRAAIENTA 256
>pdb|2IY9|A Chain A, Crystal Structure Of The A-Subunit Of The Ab5 Toxin From
E. Coli
Length = 347
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI APG NI T P+ K SGTS + +SGV+AA+ NP + +
Sbjct: 248 DIAAPGQNI--------TFLRPDAKT----GTGSGTSEATAIVSGVLAAMTSCNPRATAT 295
Query: 573 EIKSAVMTTATQTNNLRAPIT 593
E+K ++ +A + +L +T
Sbjct: 296 ELKRTLLESADKYPSLVDKVT 316
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 554 HISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAP 591
HI+GV+AA +H NP ++ A + T+T LR P
Sbjct: 209 HIAGVIAAGRHANP------VEHAHVVTSTTHKTLRGP 240
>pdb|3U25|A Chain A, Crystal Structure Of P. Aeruginoas Azurin Containing A
Tyr-His Hydrogen Bonded Pair
pdb|3U25|B Chain B, Crystal Structure Of P. Aeruginoas Azurin Containing A
Tyr-His Hydrogen Bonded Pair
Length = 127
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 175 GNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLA 234
GND + F+ N + ++ G P++++GH +V STAA +QG G+A
Sbjct: 8 GNDQMQFNTNAHTVDKSCKQFTVNLSHPGNLPKNVMGH-NYVLSTAAD--MQGVVTDGMA 64
Query: 235 AG 236
+G
Sbjct: 65 SG 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,738,045
Number of Sequences: 62578
Number of extensions: 993372
Number of successful extensions: 2288
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1969
Number of HSP's gapped (non-prelim): 204
length of query: 773
length of database: 14,973,337
effective HSP length: 106
effective length of query: 667
effective length of database: 8,340,069
effective search space: 5562826023
effective search space used: 5562826023
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)