Query 004113
Match_columns 773
No_of_seqs 384 out of 3081
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 17:46:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 5.3E-51 1.1E-55 438.0 30.7 301 104-583 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 1.5E-49 3.3E-54 442.1 23.2 293 129-622 305-618 (639)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 2.2E-48 4.8E-53 405.0 25.4 244 131-586 1-254 (255)
4 cd05562 Peptidases_S53_like Pe 100.0 2.2E-48 4.8E-53 407.8 24.5 271 134-617 1-274 (275)
5 cd07478 Peptidases_S8_CspA-lik 100.0 7.3E-48 1.6E-52 430.1 28.8 410 135-608 1-455 (455)
6 cd07497 Peptidases_S8_14 Pepti 100.0 8.8E-48 1.9E-52 409.1 24.1 290 137-582 1-311 (311)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 3.3E-47 7.2E-52 416.3 29.2 313 130-617 2-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 1.5E-46 3.3E-51 404.6 27.8 292 129-622 4-303 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 4.3E-46 9.4E-51 389.5 26.0 249 130-588 2-255 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 1.5E-44 3.4E-49 386.6 29.8 283 137-615 1-295 (295)
11 cd07483 Peptidases_S8_Subtilis 100.0 4.6E-45 1E-49 387.8 25.4 261 138-583 1-291 (291)
12 cd05561 Peptidases_S8_4 Peptid 100.0 7.5E-45 1.6E-49 375.0 24.7 235 140-608 1-239 (239)
13 cd07493 Peptidases_S8_9 Peptid 100.0 8.5E-44 1.9E-48 373.5 25.1 246 139-583 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 1.9E-43 4.2E-48 371.3 26.0 247 137-583 1-264 (264)
15 cd04857 Peptidases_S8_Tripepti 100.0 4.5E-43 9.8E-48 379.4 28.8 221 207-585 182-412 (412)
16 cd07485 Peptidases_S8_Fervidol 100.0 3.9E-43 8.5E-48 370.8 26.8 264 129-581 1-273 (273)
17 cd07487 Peptidases_S8_1 Peptid 100.0 5.8E-43 1.3E-47 368.4 25.7 258 137-583 1-264 (264)
18 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.5E-42 3.4E-47 362.9 26.0 233 130-584 17-255 (255)
19 KOG1153 Subtilisin-related pro 100.0 2.3E-43 4.9E-48 365.5 18.7 333 27-583 77-461 (501)
20 cd04847 Peptidases_S8_Subtilis 100.0 2.1E-42 4.5E-47 368.8 21.6 264 141-583 2-291 (291)
21 cd07484 Peptidases_S8_Thermita 100.0 8.3E-42 1.8E-46 358.6 25.8 240 129-585 20-259 (260)
22 cd07490 Peptidases_S8_6 Peptid 100.0 2.3E-41 5E-46 354.0 25.3 253 139-583 1-254 (254)
23 cd07494 Peptidases_S8_10 Pepti 100.0 2.1E-41 4.5E-46 359.6 23.5 254 128-587 11-287 (298)
24 cd07480 Peptidases_S8_12 Pepti 100.0 3.8E-41 8.2E-46 359.8 24.7 267 133-613 3-296 (297)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 3.7E-41 8E-46 360.2 24.6 278 133-583 2-293 (293)
26 cd07498 Peptidases_S8_15 Pepti 100.0 3E-41 6.6E-46 350.5 23.3 241 140-581 1-242 (242)
27 cd07473 Peptidases_S8_Subtilis 100.0 2.5E-40 5.5E-45 347.2 26.4 250 138-583 2-259 (259)
28 cd07496 Peptidases_S8_13 Pepti 100.0 2.1E-40 4.6E-45 352.2 25.2 260 139-581 1-285 (285)
29 cd07477 Peptidases_S8_Subtilis 100.0 4.8E-40 1E-44 338.6 24.7 227 139-581 1-229 (229)
30 cd04843 Peptidases_S8_11 Pepti 100.0 2.4E-40 5.1E-45 347.5 20.7 246 129-583 6-277 (277)
31 PF00082 Peptidase_S8: Subtila 100.0 1.3E-40 2.7E-45 354.0 17.1 277 141-617 1-282 (282)
32 cd07491 Peptidases_S8_7 Peptid 100.0 5.7E-40 1.2E-44 339.1 20.7 160 137-341 2-171 (247)
33 cd07482 Peptidases_S8_Lantibio 100.0 5.5E-39 1.2E-43 343.6 23.0 154 139-323 1-159 (294)
34 KOG4266 Subtilisin kexin isozy 100.0 1.8E-38 4E-43 336.8 24.4 366 29-624 48-472 (1033)
35 cd07492 Peptidases_S8_8 Peptid 100.0 2E-38 4.4E-43 324.7 23.7 222 139-583 1-222 (222)
36 cd04059 Peptidases_S8_Protein_ 100.0 9.1E-39 2E-43 342.3 18.6 251 127-583 28-297 (297)
37 cd04848 Peptidases_S8_Autotran 100.0 5.8E-38 1.3E-42 330.7 23.4 246 136-583 1-267 (267)
38 cd07488 Peptidases_S8_2 Peptid 100.0 3.9E-33 8.4E-38 287.2 16.7 198 206-582 33-247 (247)
39 KOG1114 Tripeptidyl peptidase 100.0 5.4E-32 1.2E-36 299.9 20.8 240 209-617 309-557 (1304)
40 cd00306 Peptidases_S8_S53 Pept 100.0 1.4E-30 3E-35 269.1 24.8 235 140-581 1-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 1.4E-23 3E-28 240.9 22.3 272 129-617 131-420 (508)
42 KOG3526 Subtilisin-like propro 99.9 2.7E-23 5.7E-28 210.6 10.5 276 1-322 1-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 1.1E-16 2.4E-21 175.1 13.5 105 235-343 80-198 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.1 2.1E-10 4.6E-15 108.6 10.6 114 370-503 25-141 (143)
45 cd02120 PA_subtilisin_like PA_ 99.1 7.2E-10 1.6E-14 102.7 11.5 122 349-478 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 98.8 1.2E-08 2.6E-13 86.7 6.8 75 32-107 1-82 (82)
47 PF06280 DUF1034: Fn3-like dom 98.6 5.9E-07 1.3E-11 81.3 12.0 88 673-764 1-112 (112)
48 KOG3525 Subtilisin-like propro 98.5 5.9E-07 1.3E-11 99.6 11.4 158 129-323 24-188 (431)
49 cd04816 PA_SaNapH_like PA_SaNa 98.4 8.8E-07 1.9E-11 81.4 8.1 85 391-477 29-120 (122)
50 PF02225 PA: PA domain; Inter 98.4 4.7E-07 1E-11 80.2 5.0 76 392-469 20-101 (101)
51 COG4934 Predicted protease [Po 98.3 6E-06 1.3E-10 98.4 15.2 97 238-338 288-395 (1174)
52 cd02122 PA_GRAIL_like PA _GRAI 98.3 2.4E-06 5.1E-11 79.9 9.0 86 391-478 44-137 (138)
53 cd02129 PA_hSPPL_like PA_hSPPL 98.3 2E-06 4.3E-11 77.7 7.6 78 392-471 31-114 (120)
54 cd02127 PA_hPAP21_like PA_hPAP 98.3 3.4E-06 7.4E-11 76.6 9.0 85 392-479 22-116 (118)
55 cd04818 PA_subtilisin_1 PA_sub 98.3 2.8E-06 6E-11 77.7 8.4 84 391-477 27-116 (118)
56 cd00538 PA PA: Protease-associ 98.2 3.1E-06 6.8E-11 78.2 8.1 84 391-476 30-123 (126)
57 cd04817 PA_VapT_like PA_VapT_l 98.2 3.5E-06 7.6E-11 78.3 7.5 75 398-472 49-134 (139)
58 cd02126 PA_EDEM3_like PA_EDEM3 98.2 6.1E-06 1.3E-10 76.1 8.1 83 392-477 28-124 (126)
59 cd02130 PA_ScAPY_like PA_ScAPY 98.2 6.8E-06 1.5E-10 75.6 8.3 84 392-478 32-121 (122)
60 cd02132 PA_GO-like PA_GO-like: 98.1 1.2E-05 2.6E-10 75.5 8.1 81 392-477 49-137 (139)
61 cd02124 PA_PoS1_like PA_PoS1_l 98.1 1.4E-05 3.1E-10 73.7 8.2 84 391-477 41-127 (129)
62 cd02125 PA_VSR PA_VSR: Proteas 98.0 1.6E-05 3.6E-10 73.1 8.1 85 392-478 23-126 (127)
63 cd04813 PA_1 PA_1: Protease-as 98.0 1.5E-05 3.3E-10 72.2 7.4 77 391-471 27-111 (117)
64 cd04819 PA_2 PA_2: Protease-as 98.0 4.1E-05 8.8E-10 70.8 9.4 91 370-473 22-121 (127)
65 cd02123 PA_C_RZF_like PA_C-RZF 97.9 4E-05 8.7E-10 73.2 7.8 81 392-474 51-142 (153)
66 cd04815 PA_M28_2 PA_M28_2: Pro 96.4 0.0098 2.1E-07 55.5 7.0 77 400-476 34-131 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 96.4 0.008 1.7E-07 58.5 6.5 69 401-471 51-155 (183)
68 PF14874 PapD-like: Flagellar- 96.1 0.23 5E-06 43.7 14.1 82 682-767 20-101 (102)
69 PF10633 NPCBM_assoc: NPCBM-as 95.4 0.071 1.5E-06 44.6 7.4 58 681-739 4-62 (78)
70 cd04814 PA_M28_1 PA_M28_1: Pro 95.0 0.045 9.8E-07 51.2 5.5 66 370-442 19-100 (142)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 94.7 0.088 1.9E-06 49.9 6.7 88 372-467 21-130 (151)
72 cd04820 PA_M28_1_1 PA_M28_1_1: 94.6 0.037 7.9E-07 51.5 4.0 65 371-442 22-96 (137)
73 KOG2442 Uncharacterized conser 94.3 0.11 2.5E-06 56.7 7.2 78 401-480 91-176 (541)
74 PF11614 FixG_C: IG-like fold 92.5 1.2 2.6E-05 40.4 10.1 54 684-739 33-86 (118)
75 PF06030 DUF916: Bacterial pro 92.3 1.6 3.5E-05 39.8 10.5 74 678-754 23-120 (121)
76 cd02121 PA_GCPII_like PA_GCPII 91.4 0.22 4.8E-06 50.3 4.1 40 401-442 67-106 (220)
77 cd02131 PA_hNAALADL2_like PA_h 91.1 0.19 4.2E-06 47.0 3.1 39 402-442 37-75 (153)
78 COG1470 Predicted membrane pro 85.5 7 0.00015 43.2 10.8 72 680-753 395-468 (513)
79 KOG3920 Uncharacterized conser 84.4 1.2 2.5E-05 41.5 3.7 78 391-471 74-163 (193)
80 KOG4628 Predicted E3 ubiquitin 82.5 2.9 6.3E-05 44.9 6.4 78 392-471 63-149 (348)
81 COG1470 Predicted membrane pro 76.8 37 0.0008 37.8 12.5 64 681-745 283-352 (513)
82 KOG1114 Tripeptidyl peptidase 76.5 1.8 3.9E-05 51.4 2.7 24 134-157 77-100 (1304)
83 PF00345 PapD_N: Pili and flag 76.1 23 0.0005 32.1 9.6 68 683-753 15-89 (122)
84 PF00635 Motile_Sperm: MSP (Ma 74.2 29 0.00062 30.5 9.5 52 683-738 19-70 (109)
85 TIGR02745 ccoG_rdxA_fixG cytoc 71.0 17 0.00037 40.9 8.6 54 683-738 347-400 (434)
86 cd04821 PA_M28_1_2 PA_M28_1_2: 70.5 5.3 0.00012 38.2 3.9 45 398-442 42-103 (157)
87 PF07718 Coatamer_beta_C: Coat 62.4 66 0.0014 30.0 9.2 68 684-753 71-138 (140)
88 PF00927 Transglut_C: Transglu 53.6 96 0.0021 27.2 8.7 56 681-739 14-78 (107)
89 PF07705 CARDB: CARDB; InterP 52.9 1.3E+02 0.0028 25.5 9.4 54 681-738 18-72 (101)
90 PF07610 DUF1573: Protein of u 50.3 62 0.0013 23.7 5.7 43 688-735 2-45 (45)
91 smart00635 BID_2 Bacterial Ig- 50.2 48 0.001 27.6 5.9 43 712-759 4-46 (81)
92 TIGR03656 IsdC heme uptake pro 41.7 28 0.00062 34.9 3.6 37 1-37 1-38 (217)
93 PF15284 PAGK: Phage-encoded v 40.0 22 0.00048 27.7 2.0 12 1-12 1-12 (61)
94 PF12690 BsuPI: Intracellular 39.8 79 0.0017 26.6 5.5 54 684-739 2-72 (82)
95 PF08139 LPAM_1: Prokaryotic m 37.9 19 0.00042 22.9 1.1 14 1-14 7-20 (25)
96 PLN03080 Probable beta-xylosid 31.2 1.3E+02 0.0029 36.7 7.8 53 683-737 685-744 (779)
97 PF02845 CUE: CUE domain; Int 31.1 49 0.0011 23.7 2.5 24 559-582 5-28 (42)
98 PRK15098 beta-D-glucoside gluc 31.0 1.5E+02 0.0031 36.4 8.1 71 664-738 642-728 (765)
99 TIGR01451 B_ant_repeat conserv 30.9 2E+02 0.0044 21.8 6.0 38 682-722 12-50 (53)
100 PF05753 TRAP_beta: Translocon 30.8 3E+02 0.0064 27.0 8.7 69 681-754 37-114 (181)
101 PF08194 DIM: DIM protein; In 30.5 75 0.0016 22.2 3.1 14 1-14 1-14 (36)
102 PF13940 Ldr_toxin: Toxin Ldr, 30.3 40 0.00087 22.9 1.7 13 550-562 14-26 (35)
103 PF01345 DUF11: Domain of unkn 29.4 1.2E+02 0.0027 24.6 5.1 32 681-713 40-72 (76)
104 COG4808 Uncharacterized protei 29.4 1.3E+02 0.0029 27.7 5.4 32 65-96 94-125 (152)
105 COG5510 Predicted small secret 29.0 55 0.0012 23.8 2.3 12 1-12 2-13 (44)
106 PRK13202 ureB urease subunit b 28.0 1.3E+02 0.0029 26.3 5.0 50 684-735 21-84 (104)
107 PF13956 Ibs_toxin: Toxin Ibs, 27.4 31 0.00067 20.0 0.7 12 1-12 1-12 (19)
108 PRK15019 CsdA-binding activato 27.3 58 0.0012 30.8 3.0 33 543-576 77-109 (147)
109 PF08260 Kinin: Insect kinin p 27.2 29 0.00063 15.8 0.5 6 496-501 3-8 (8)
110 PF08821 CGGC: CGGC domain; I 27.1 3.6E+02 0.0077 24.0 7.8 69 239-314 31-104 (107)
111 cd00407 Urease_beta Urease bet 26.7 1.5E+02 0.0032 26.0 5.0 15 683-698 19-33 (101)
112 PRK15346 outer membrane secret 26.5 2.7E+02 0.0058 32.2 8.8 95 1-104 1-96 (499)
113 TIGR03391 FeS_syn_CsdE cystein 26.3 62 0.0013 30.2 3.0 35 542-577 71-105 (138)
114 PF08626 TRAPPC9-Trs120: Trans 26.3 3.8E+02 0.0082 34.7 11.0 85 681-771 798-922 (1185)
115 PF12276 DUF3617: Protein of u 26.3 71 0.0015 30.5 3.5 37 1-38 1-37 (162)
116 PRK10081 entericidin B membran 26.2 58 0.0013 24.3 2.2 9 1-9 2-10 (48)
117 PRK13203 ureB urease subunit b 25.9 1.5E+02 0.0032 26.0 4.9 15 683-698 19-33 (102)
118 TIGR00192 urease_beta urease, 24.1 1.6E+02 0.0034 25.8 4.7 15 683-698 19-33 (101)
119 PF04744 Monooxygenase_B: Mono 23.6 5.1E+02 0.011 28.4 9.4 53 681-738 262-336 (381)
120 PRK09296 cysteine desufuration 22.7 79 0.0017 29.5 3.0 33 543-576 67-99 (138)
121 PRK09810 entericidin A; Provis 21.6 80 0.0017 22.8 2.1 8 1-8 2-9 (41)
122 PF12071 DUF3551: Protein of u 21.6 1.1E+02 0.0024 25.8 3.3 11 1-11 1-11 (82)
123 smart00237 Calx_beta Domains i 21.5 4.7E+02 0.01 22.1 7.4 37 728-764 31-74 (90)
124 PF04255 DUF433: Protein of un 21.3 79 0.0017 24.4 2.2 37 543-579 12-54 (56)
125 smart00237 Calx_beta Domains i 21.2 5.1E+02 0.011 21.9 9.1 64 670-738 8-76 (90)
126 PF02657 SufE: Fe-S metabolism 20.9 96 0.0021 28.4 3.1 33 544-577 59-91 (125)
127 TIGR01655 yxeA_fam conserved h 20.3 1.2E+02 0.0025 27.4 3.4 41 1-41 1-41 (114)
128 TIGR02052 MerP mercuric transp 20.2 65 0.0014 26.4 1.8 17 1-17 1-17 (92)
129 PRK13205 ureB urease subunit b 20.2 2.1E+02 0.0044 27.0 4.9 20 683-703 19-42 (162)
130 PRK13201 ureB urease subunit b 20.1 2.2E+02 0.0047 26.3 5.0 15 683-698 19-33 (136)
131 COG2166 sufE Cysteine desulfur 20.1 90 0.002 29.3 2.7 33 543-576 72-104 (144)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.3e-51 Score=438.04 Aligned_cols=301 Identities=54% Similarity=0.851 Sum_probs=258.0
Q ss_pred eccccccCccccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccC
Q 004113 104 LQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSC 183 (773)
Q Consensus 104 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~ 183 (773)
+++++++++++++++... ...+|..+++|+||+|||||||||++||+|.+....+++..|.+.|..+..+....|
T Consensus 1 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAW-----GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSC 75 (307)
T ss_pred CCccccCCHHHcCCCCCC-----CcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCc
Confidence 467889999999998644 222577899999999999999999999999998888899999999999988877889
Q ss_pred CceeEeeeeccccccc------cCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCC
Q 004113 184 NRKIIGARFYDIEDDV------VANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257 (773)
Q Consensus 184 n~ki~~~~~~~~~~~~------~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g 257 (773)
++|+++.++|.+++.. ..+...+.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++..+
T Consensus 76 ~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~ 155 (307)
T cd04852 76 NNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDG 155 (307)
T ss_pred CCeEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCC
Confidence 9999999999876431 0234566789999999999999998777666666677889999999999999999866
Q ss_pred CCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEc
Q 004113 258 GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVA 337 (773)
Q Consensus 258 ~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVg 337 (773)
.+..+++++||++|++++++|||||||... ...+.+.+..++.++.++|++||+||||+|+.....++..||+++||
T Consensus 156 ~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~---~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vg 232 (307)
T cd04852 156 GCFGSDILAAIDQAIADGVDVISYSIGGGS---PDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232 (307)
T ss_pred CccHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEE
Confidence 788999999999999999999999999876 24566788888889999999999999999987777888889999998
Q ss_pred ccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCC
Q 004113 338 ASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDM 417 (773)
Q Consensus 338 a~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~ 417 (773)
+++
T Consensus 233 a~~----------------------------------------------------------------------------- 235 (307)
T cd04852 233 AST----------------------------------------------------------------------------- 235 (307)
T ss_pred ecc-----------------------------------------------------------------------------
Confidence 731
Q ss_pred CchhhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccc
Q 004113 418 GSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYF 497 (773)
Q Consensus 418 ~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 497 (773)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 004113 498 SARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSA 577 (773)
Q Consensus 498 Ss~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~ 577 (773)
+||||+|||++|++++..... .........|..++|||||||+|||++|||+|++|+|+|++||++
T Consensus 236 ------------~~~di~apG~~i~~~~~~~~~--~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~ 301 (307)
T cd04852 236 ------------LKPDIAAPGVDILAAWTPEGA--DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSA 301 (307)
T ss_pred ------------CccceeeccCceeecccCccc--cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 477999999999999864211 012233378999999999999999999999999999999999999
Q ss_pred HHhccc
Q 004113 578 VMTTAT 583 (773)
Q Consensus 578 L~~TA~ 583 (773)
|++||+
T Consensus 302 L~~tA~ 307 (307)
T cd04852 302 LMTTAY 307 (307)
T ss_pred HHHhcC
Confidence 999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.5e-49 Score=442.07 Aligned_cols=293 Identities=18% Similarity=0.193 Sum_probs=211.9
Q ss_pred CCCC--CCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 129 PSLN--SQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 129 ~~~~--~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
++|+ .+.+|+||+|||||||||++||||.+.-.... ....|.. +.+-+.....+.+ .+++|.++ ...+
T Consensus 305 ~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~-~el~Grd--giDdD~nG~vdd~-~G~nfVd~------~~~P 374 (639)
T PTZ00262 305 ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNV-KELHGRK--GIDDDNNGNVDDE-YGANFVNN------DGGP 374 (639)
T ss_pred HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccccc-ccccCcc--ccccccCCccccc-ccccccCC------CCCC
Confidence 4555 35689999999999999999999985421000 0001100 0000000001111 22344432 2456
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCC
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGS 286 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 286 (773)
.|..||||||||||||...+ +..+.||||+|+|+++|+++..+.+..+++++||+||++.|++|||||||..
T Consensus 375 ~D~~GHGTHVAGIIAA~gnN--------~~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~ 446 (639)
T PTZ00262 375 MDDNYHGTHVSGIISAIGNN--------NIGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSFD 446 (639)
T ss_pred CCCCCcchHHHHHHhccccC--------CCceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccccC
Confidence 88999999999999997643 2336899999999999999987778999999999999999999999999975
Q ss_pred CCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--------------cc----CCCcEEEEcccccCcceeeE
Q 004113 287 AGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSV--------------VN----FAPWIFTVAASTIDRDFESD 348 (773)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~--------------~~----~~p~vitVga~~~~~~~~~~ 348 (773)
. ....+..++.+|.++|++||+||||+|...... +. ..|++|+|||+..+..
T Consensus 447 ~------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~~---- 516 (639)
T PTZ00262 447 E------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDKN---- 516 (639)
T ss_pred C------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCCC----
Confidence 4 235677788999999999999999998643211 11 1255666665422100
Q ss_pred EEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccc
Q 004113 349 IVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVK 428 (773)
Q Consensus 349 ~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~ 428 (773)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCC
Q 004113 429 SLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRN 508 (773)
Q Consensus 429 ~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~ 508 (773)
....++.||++|..
T Consensus 517 -------------------------------------------------------------~~~s~s~~Snyg~~----- 530 (639)
T PTZ00262 517 -------------------------------------------------------------NQYSLSPNSFYSAK----- 530 (639)
T ss_pred -------------------------------------------------------------CcccccccccCCCC-----
Confidence 00123455666532
Q ss_pred CccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCC
Q 004113 509 ILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNL 588 (773)
Q Consensus 509 ~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~ 588 (773)
++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|++.+|+++|++||.+++..
T Consensus 531 --~VDIaAPG~dI~St~p~------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~ 596 (639)
T PTZ00262 531 --YCQLAAPGTNIYSTFPK------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL 596 (639)
T ss_pred --cceEEeCCCCeeeccCC------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC
Confidence 35999999999999987 7899999999999999999999999999999999999999999887542
Q ss_pred CCccccCCCCCCCCCCCC-cccccccccCCCceee
Q 004113 589 RAPITTNSGAAATPYDFG-AGEVSTTASLQPGLVY 622 (773)
Q Consensus 589 g~~~~~~~~~~~~~~~~G-~G~id~~~A~~~~lv~ 622 (773)
. ..+| .|+||+++|++.++-+
T Consensus 597 ------------~-n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 ------------K-NKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred ------------C-CccccCcEEcHHHHHHHHHhc
Confidence 2 2233 3899999999966644
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=2.2e-48 Score=404.99 Aligned_cols=244 Identities=27% Similarity=0.403 Sum_probs=199.4
Q ss_pred CCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCC
Q 004113 131 LNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMV 210 (773)
Q Consensus 131 ~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~ 210 (773)
|+.+++|+||+|||||||||.+||+|.+.. ...+|.+ .....|..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~-------~~~~~d~~ 45 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN-------EKTLDDGL 45 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC-------CCCCCCCC
Confidence 889999999999999999999999997320 0011111 13355788
Q ss_pred CCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCC
Q 004113 211 GHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIV 290 (773)
Q Consensus 211 gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~ 290 (773)
||||||||||+|+.. .+.||||+|+|+.+|++.+.+....++++++|+||+++++||||||||...
T Consensus 46 gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--- 111 (255)
T cd07479 46 GHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--- 111 (255)
T ss_pred CcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---
Confidence 999999999998741 248999999999999998875667788999999999999999999999754
Q ss_pred CCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--ccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCC
Q 004113 291 RPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSV--VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 368 (773)
Q Consensus 291 ~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 368 (773)
+....+..++.++.++|++||+||||+|+...+. +...+++|+|||++.
T Consensus 112 --~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~--------------------------- 162 (255)
T cd07479 112 --FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF--------------------------- 162 (255)
T ss_pred --CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc---------------------------
Confidence 2335566667788899999999999999764443 344578888887432
Q ss_pred CCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccccc
Q 004113 369 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 448 (773)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 448 (773)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCC----CCCCccCceEeCCccEEee
Q 004113 449 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPL----TRNILKPDITAPGVNILAA 524 (773)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~d~~iKPDI~APG~~I~sa 524 (773)
.+.++.|||+|++.. ..+++||||+|||.+|+++
T Consensus 163 ------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~ 200 (255)
T cd07479 163 ------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGS 200 (255)
T ss_pred ------------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecCCCeecc
Confidence 246789999996521 2578899999999999988
Q ss_pred ecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCC----CCCHHHHHHHHHhcccccC
Q 004113 525 WMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNP----TFSPSEIKSAVMTTATQTN 586 (773)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p----~ls~~~Ik~~L~~TA~~~~ 586 (773)
... +.|..++|||||||||||++|||+|++| .++|.+||++|++||++++
T Consensus 201 ~~~------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 201 KLK------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ccC------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 765 7799999999999999999999999998 7899999999999999874
No 4
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=2.2e-48 Score=407.81 Aligned_cols=271 Identities=23% Similarity=0.235 Sum_probs=204.4
Q ss_pred CCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCc
Q 004113 134 QDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHG 213 (773)
Q Consensus 134 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHG 213 (773)
+++|+||+|||||||||..||++.+...+..+..+. +... .....|..+||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~~-----------------------~~~~------~~~~~d~~gHG 51 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNVN-----------------------VLGD------LDGGSGGGDEG 51 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCccee-----------------------eccc------cCCCCCCCchH
Confidence 579999999999999999998654322111111110 0000 13456788999
Q ss_pred hhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCC
Q 004113 214 THVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPL 293 (773)
Q Consensus 214 ThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~ 293 (773)
|||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++|||||||.... ..+
T Consensus 52 T~vAgii~------------------GvAP~a~l~~~~~~-----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~--~~~ 106 (275)
T cd05562 52 RAMLEIIH------------------DIAPGAELAFHTAG-----GGELDFAAAIRALAAAGADIIVDDIGYLNE--PFF 106 (275)
T ss_pred HHHHHHHh------------------ccCCCCEEEEEecC-----CCHHHHHHHHHHHHHcCCCEEEecccccCC--Ccc
Confidence 99999994 79999999998873 347899999999999999999999998652 222
Q ss_pred CCcHHHHHHHHHHhC-CcEEEEecCCCCCCCC-CcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCC
Q 004113 294 TDDPIALGAFHAVEH-GITVVCSAGNDGPSSG-SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSP 371 (773)
Q Consensus 294 ~~~~~~~~~~~a~~~-Gi~vV~aAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 371 (773)
....+..++.++.++ |++||+||||+|.... ..+...|++|+|||++.+.......
T Consensus 107 ~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s---------------------- 164 (275)
T cd05562 107 QDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS---------------------- 164 (275)
T ss_pred cCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc----------------------
Confidence 345677788888887 9999999999997532 3355679999999976542110000
Q ss_pred ceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCcc
Q 004113 372 VYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGT 451 (773)
Q Consensus 372 ~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 451 (773)
|..
T Consensus 165 ----------------------~~~------------------------------------------------------- 167 (275)
T cd05562 165 ----------------------DPA------------------------------------------------------- 167 (275)
T ss_pred ----------------------ccc-------------------------------------------------------
Confidence 000
Q ss_pred ccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCc-cEEeeecCCCC
Q 004113 452 FPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGV-NILAAWMGNDT 530 (773)
Q Consensus 452 ~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~-~I~sa~~~~~~ 530 (773)
........+.||++||+. ++++||||+|||+ ++.+.+..
T Consensus 168 -----------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~--- 207 (275)
T cd05562 168 -----------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG--- 207 (275)
T ss_pred -----------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC---
Confidence 000011345678899987 5889999999975 44555444
Q ss_pred CCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccc
Q 004113 531 GEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEV 610 (773)
Q Consensus 531 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~i 610 (773)
+.|..++|||||||||||++|||+|++|+|++++||++|++||+++...+ .+..||||+|
T Consensus 208 ---------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g-----------~d~~~G~G~v 267 (275)
T cd05562 208 ---------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPG-----------YDNASGSGLV 267 (275)
T ss_pred ---------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCC-----------CCCCcCcCcc
Confidence 78999999999999999999999999999999999999999999886443 6679999999
Q ss_pred cccccCC
Q 004113 611 STTASLQ 617 (773)
Q Consensus 611 d~~~A~~ 617 (773)
|+.+|++
T Consensus 268 da~~Av~ 274 (275)
T cd05562 268 DADRAVA 274 (275)
T ss_pred cHHHHhh
Confidence 9999986
No 5
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=7.3e-48 Score=430.14 Aligned_cols=410 Identities=21% Similarity=0.206 Sum_probs=242.8
Q ss_pred CCCCCcEEEEEccCCCCCCCCCCC-CCCCCCCCcccccccCCCCCCcccCCceeEeeeecccc-------ccccCCCCCC
Q 004113 135 DQESDTIIGILDTGVWPESESFND-KDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIE-------DDVVANGQSP 206 (773)
Q Consensus 135 ~~G~Gv~VaVIDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~-------~~~~~~~~~~ 206 (773)
++|+||+|||||||||+.||+|++ ++.+++...|++....+..- ....+...+... .....+....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~p~~~~~~ 74 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASDNPYDIVPS 74 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcCCccccCcC
Confidence 479999999999999999999985 35667788888766543211 111111111110 0000122445
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCC----------CCHHHHHHHHHHHhhC--
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYG----------CTGSNILAAFDDAIAD-- 274 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~----------~~~~~i~~ai~~a~~~-- 274 (773)
.|..||||||||||||+..+ +..+.||||+|+|+.+|++...+. +..++++.||+|+++.
T Consensus 75 ~D~~GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~ 146 (455)
T cd07478 75 RDENGHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKAL 146 (455)
T ss_pred CCCCCchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHH
Confidence 78999999999999998743 234689999999999999988743 6788999999999863
Q ss_pred ---CCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhC-CcEEEEecCCCCCCCCCcccC-C------CcEEEEcccccCc
Q 004113 275 ---GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEH-GITVVCSAGNDGPSSGSVVNF-A------PWIFTVAASTIDR 343 (773)
Q Consensus 275 ---g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~aAGN~g~~~~~~~~~-~------p~vitVga~~~~~ 343 (773)
.+.|||||||...+ .+...+.++.++..+..+ |++||+||||+|....+.... . .--+.|+.. +.
T Consensus 147 ~~~~p~VInlSlG~~~g--~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~--~~ 222 (455)
T cd07478 147 ELNKPLVINISLGTNFG--SHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEG--EK 222 (455)
T ss_pred HhCCCeEEEEccCcCCC--CCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCC--Cc
Confidence 57899999999765 567778888888887766 999999999999754433321 0 011222221 11
Q ss_pred ceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhh
Q 004113 344 DFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDK 423 (773)
Q Consensus 344 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k 423 (773)
.+...++...-..+.-.-+.+ .+...+.+.... ..... +....-..++.+..+.....+-.+.
T Consensus 223 ~~~~eiW~~~~d~~~v~i~sP----~Ge~~~~i~~~~-----------~~~~~--~~~~~~~t~i~v~y~~~~~~~g~~~ 285 (455)
T cd07478 223 GFNLEIWGDFPDRFSVSIISP----SGESSGRINPGI-----------GGSES--YKFVFEGTTVYVYYYLPEPYTGDQL 285 (455)
T ss_pred ceEEEEecCCCCEEEEEEECC----CCCccCccCcCC-----------Cccee--EEEEECCeEEEEEEcCCCCCCCCeE
Confidence 111111111111110000000 000000000000 00000 0000001112222111110000000
Q ss_pred h---cccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEe----eCeeeeccc-CCCccc
Q 004113 424 K---DGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATIL----PTVSVTKYK-PAPAIA 495 (773)
Q Consensus 424 ~---~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~----~~~~~~~~~-~~~~~a 495 (773)
. ......|-+-+-++.... .......|+|.-.....+..+ +......+.+.- ...++.... ..+.++
T Consensus 286 i~i~~~~~~~GiW~i~~~~~~~-~~g~~~~Wlp~~~~~~~~t~f----~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~ 360 (455)
T cd07478 286 IFIRFKNIKPGIWKIRLTGVSI-TDGRFDAWLPSRGLLSENTRF----LEPDPYTTLTIPGTARSVITVGAYNQNNNSIA 360 (455)
T ss_pred EEEEccCCCccceEEEEEeccC-CCceEEEEecCcCcCCCCCEe----ecCCCCceEecCCCCCCcEEEEEEeCCCCccc
Confidence 0 011222333333333221 122233455544443332222 222222222221 112333333 235699
Q ss_pred cccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhC------CCC
Q 004113 496 YFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQN------PTF 569 (773)
Q Consensus 496 ~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------p~l 569 (773)
.||||||+. ++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|++ |.|
T Consensus 361 ~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~ 426 (455)
T cd07478 361 IFSGRGPTR--DGRIKPDIAAPGVNILTASPG------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYL 426 (455)
T ss_pred CccCCCcCC--CCCcCceEEecCCCEEEeecC------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCC
Confidence 999999998 699999999999999999987 889999999999999999999999975 567
Q ss_pred CHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcc
Q 004113 570 SPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAG 608 (773)
Q Consensus 570 s~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 608 (773)
++++||++|++||+++... .+++++||||
T Consensus 427 ~~~~ik~~L~~tA~~~~~~----------~~pn~~~GyG 455 (455)
T cd07478 427 YGEKIKTYLIRGARRRPGD----------EYPNPEWGYG 455 (455)
T ss_pred CHHHHHHHHHHhCccCCCC----------CCCCCCCCCC
Confidence 9999999999999998632 3488999998
No 6
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.8e-48 Score=409.14 Aligned_cols=290 Identities=25% Similarity=0.193 Sum_probs=192.4
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhh
Q 004113 137 ESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHV 216 (773)
Q Consensus 137 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThV 216 (773)
|+||+|||||||||++||+|.+.... .|. ..|+ +...+....++..+ ....+.|..||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~------~~~d---~~~~~~~g~d~~~~-----~~~~~~D~~gHGThv 62 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWK------LKFD---YKAYLLPGMDKWGG-----FYVIMYDFFSHGTSC 62 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Ccc------cccC---cCCCccCCcCCCCC-----ccCCCCCccccchhH
Confidence 89999999999999999999743210 000 0000 01112222222211 113467899999999
Q ss_pred HHhhccCCcCCCccccc-ccceeeeccCCceEEEEEeecCCCCCCHHHHHH-------HHHHH--hhCCCcEEEeccCCC
Q 004113 217 ASTAAGQAVQGASYYGL-AAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA-------AFDDA--IADGVDVLSLSLGGS 286 (773)
Q Consensus 217 AGiiag~~~~~~~~~G~-~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~-------ai~~a--~~~g~dVIN~SlG~~ 286 (773)
||||||......+.+++ ....+.||||+|+|+.+|++...+......+.. +++|. .+++++|||||||..
T Consensus 63 AGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~ 142 (311)
T cd07497 63 ASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGIS 142 (311)
T ss_pred HHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcC
Confidence 99999986443332221 234579999999999999997542333222332 33443 468999999999985
Q ss_pred CCCCC--CCCCcHHHHHHHHH-HhCCcEEEEecCCCCCCCCCc--ccCCCcEEEEcccccCcceeeEEEECCceEEeeee
Q 004113 287 AGIVR--PLTDDPIALGAFHA-VEHGITVVCSAGNDGPSSGSV--VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGES 361 (773)
Q Consensus 287 ~~~~~--~~~~~~~~~~~~~a-~~~Gi~vV~aAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~ 361 (773)
..... ....+..+...+.+ .++|+++|+||||+|+...+. +..++++|+|||++.....+.
T Consensus 143 ~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~-------------- 208 (311)
T cd07497 143 NFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF-------------- 208 (311)
T ss_pred CCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch--------------
Confidence 42000 11122333333332 489999999999999865443 345789999999754211000
Q ss_pred eccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCC
Q 004113 362 INFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQ 441 (773)
Q Consensus 362 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~ 441 (773)
+...+
T Consensus 209 -----------~~~~~---------------------------------------------------------------- 213 (311)
T cd07497 209 -----------YLFGY---------------------------------------------------------------- 213 (311)
T ss_pred -----------hhhcc----------------------------------------------------------------
Confidence 00000
Q ss_pred CccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccE
Q 004113 442 SRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNI 521 (773)
Q Consensus 442 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I 521 (773)
.....+.++.||||||+. ++++||||+|||++|
T Consensus 214 ---------------------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i 246 (311)
T cd07497 214 ---------------------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFA 246 (311)
T ss_pred ---------------------------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcce
Confidence 001135789999999988 699999999999999
Q ss_pred EeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 004113 522 LAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNP------TFSPSEIKSAVMTTA 582 (773)
Q Consensus 522 ~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p------~ls~~~Ik~~L~~TA 582 (773)
+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 247 ~s~~~~~~~~~--~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 247 WAPGRVLDSGG--ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred EeecccCCCCc--ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99876532100 111125799999999999999999999999876 689999999999997
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=3.3e-47 Score=416.27 Aligned_cols=313 Identities=29% Similarity=0.383 Sum_probs=237.0
Q ss_pred CCCCCC-CCCCcEEEEEccCCCCCCCCCCCCCCCCCCC-----cccccccCCCCCCcccCCceeEeeeeccccccccCCC
Q 004113 130 SLNSQD-QESDTIIGILDTGVWPESESFNDKDMGPIPT-----RWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANG 203 (773)
Q Consensus 130 ~~~~~~-~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~-----~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~ 203 (773)
+|+++. +|+||+|||||||||++||+|.+....+... .+...+. .-...+++.+++..++|.++.. +.
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~ 75 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAG---IGYGKYYNEKVPFAYNYADNND---DI 75 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhccc---CCCCcccccCCCeeEcCCCCCC---cc
Confidence 788877 9999999999999999999998654332110 1111111 1112356788888888876642 11
Q ss_pred CCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecC--CCCCCHHHHHHHHHHHhhCCCcEEEe
Q 004113 204 QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSP--EYGCTGSNILAAFDDAIADGVDVLSL 281 (773)
Q Consensus 204 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~--~g~~~~~~i~~ai~~a~~~g~dVIN~ 281 (773)
....+..+|||||||||+|...+.. .+..+.||||+|+|+.+|++.. .+......++++++++++.+++||||
T Consensus 76 ~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~ 150 (346)
T cd07475 76 LDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINM 150 (346)
T ss_pred CCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 2245789999999999999874421 1345799999999999999974 44678888999999999999999999
Q ss_pred ccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcc----------------cCCCcEEEEcccccCcce
Q 004113 282 SLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVV----------------NFAPWIFTVAASTIDRDF 345 (773)
Q Consensus 282 SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~----------------~~~p~vitVga~~~~~~~ 345 (773)
|||.... .......+..++.++.++|++||+||||+|....... ...+++|+||++...
T Consensus 151 S~G~~~~--~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~--- 225 (346)
T cd07475 151 SLGSTAG--FVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK--- 225 (346)
T ss_pred CCCcCCC--CCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc---
Confidence 9998764 2255677788889999999999999999985432211 123455555543210
Q ss_pred eeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhc
Q 004113 346 ESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKD 425 (773)
Q Consensus 346 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~ 425 (773)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCC
Q 004113 426 GVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPL 505 (773)
Q Consensus 426 ~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 505 (773)
......+.++.||+|||+.
T Consensus 226 ------------------------------------------------------------~~~~~~~~~~~~S~~G~~~- 244 (346)
T cd07475 226 ------------------------------------------------------------VPNPNGGQMSGFSSWGPTP- 244 (346)
T ss_pred ------------------------------------------------------------cCCCCCCccCCCcCCCCCc-
Confidence 0001235788999999998
Q ss_pred CCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhh----CCCCCHHH----HHHH
Q 004113 506 TRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ----NPTFSPSE----IKSA 577 (773)
Q Consensus 506 ~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~ls~~~----Ik~~ 577 (773)
+.++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++
T Consensus 245 -~~~~~pdi~apG~~i~s~~~~------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~ 311 (346)
T cd07475 245 -DLDLKPDITAPGGNIYSTVND------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNL 311 (346)
T ss_pred -ccCcCCeEEeCCCCeEEecCC------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 589999999999999999876 78999999999999999999999997 78898876 7889
Q ss_pred HHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCC
Q 004113 578 VMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQ 617 (773)
Q Consensus 578 L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~ 617 (773)
|++||.+.... ...+..+.+.++|+|+||+.+|++
T Consensus 312 l~~ta~~~~~~-----~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 312 LMNTATPPLDS-----EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHhcCCccccc-----CCCCccCCccccCcchhcHHHhhC
Confidence 99999953211 233455678899999999999985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-46 Score=404.64 Aligned_cols=292 Identities=29% Similarity=0.367 Sum_probs=228.4
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccc----cCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDV----VANGQ 204 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~----~~~~~ 204 (773)
.+|+.+++|+||+|||||+|||++||+|.+.... ..++.+.+++..+... ..+..
T Consensus 4 ~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~~~~~~~~~~ 62 (312)
T cd07489 4 KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYDGTNPPVPDD 62 (312)
T ss_pred hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccccccCCCCCC
Confidence 6899999999999999999999999999853211 0122222222211100 01224
Q ss_pred CCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccC
Q 004113 205 SPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLG 284 (773)
Q Consensus 205 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG 284 (773)
.+.|..+|||||||||+|...+ ..+.||||+|+|+.+|++...+......++++++++++++++|||||||
T Consensus 63 ~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g 133 (312)
T cd07489 63 DPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLG 133 (312)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCC
Confidence 5667799999999999998633 3468999999999999998776678888999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC---CcccCCCcEEEEcccccCcceeeEEEECCceEEeeee
Q 004113 285 GSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG---SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGES 361 (773)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~ 361 (773)
... .+..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 134 ~~~----~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------------------- 188 (312)
T cd07489 134 GPS----GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------------------- 188 (312)
T ss_pred cCC----CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------------------
Confidence 865 233467777788889999999999999986432 2234457777777621
Q ss_pred eccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCC
Q 004113 362 INFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQ 441 (773)
Q Consensus 362 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~ 441 (773)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccE
Q 004113 442 SRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNI 521 (773)
Q Consensus 442 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I 521 (773)
+.||++||+. +...||||+|||+++
T Consensus 189 -----------------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i 213 (312)
T cd07489 189 -----------------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNI 213 (312)
T ss_pred -----------------------------------------------------CCccCCCCCC--CCCcCccEEcCCCCE
Confidence 4678999987 588999999999999
Q ss_pred EeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhC-CCCCHHHHHHHHHhcccccCCCCCccccCCCCCC
Q 004113 522 LAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQN-PTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAA 600 (773)
Q Consensus 522 ~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~ 600 (773)
+++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++........ ....+
T Consensus 214 ~~~~~~~~----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~--~~~~~ 281 (312)
T cd07489 214 LSTYPLAG----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA--LPDLA 281 (312)
T ss_pred EEeeeCCC----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc--ccCCC
Confidence 99988722 459999999999999999999999999 999999999999999998865431111 01145
Q ss_pred CCCCCCcccccccccCCCceee
Q 004113 601 TPYDFGAGEVSTTASLQPGLVY 622 (773)
Q Consensus 601 ~~~~~G~G~id~~~A~~~~lv~ 622 (773)
++.++|+|+||+.+|++..-..
T Consensus 282 ~~~~~G~G~vn~~~a~~~~~~~ 303 (312)
T cd07489 282 PVAQQGAGLVNAYKALYATTTL 303 (312)
T ss_pred CHhhcCcceeeHHHHhcCCccc
Confidence 7789999999999999965433
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=4.3e-46 Score=389.52 Aligned_cols=249 Identities=25% Similarity=0.298 Sum_probs=205.5
Q ss_pred CCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCC
Q 004113 130 SLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDM 209 (773)
Q Consensus 130 ~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~ 209 (773)
+|+.+++|+||+|||||+|||++||+|.+....+... +.. ......|.
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~--------------------------~~~------~~~~~~~~ 49 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFT--------------------------YAA------AACQDGGA 49 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccC--------------------------ccc------cCCCCCCC
Confidence 7999999999999999999999999998642211100 000 01345577
Q ss_pred CCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCC-CCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 210 VGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYG-CTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 210 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
.+|||||||||+|+.. ..+.||||+|+|+.+|++...+. +...++++||+||+++|++|||||||....
T Consensus 50 ~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~ 119 (267)
T cd07476 50 SAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQ 119 (267)
T ss_pred CCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCC
Confidence 8999999999998742 23589999999999999977633 346789999999999999999999997542
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCC
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 368 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 368 (773)
.......+..++.++.++|++||+||||+|......+...|++|+||+++.+
T Consensus 120 --~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------------- 171 (267)
T cd07476 120 --TGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD-------------------------- 171 (267)
T ss_pred --CCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC--------------------------
Confidence 2344567888889999999999999999998776777778999999985321
Q ss_pred CCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccccc
Q 004113 369 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 448 (773)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 448 (773)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCC
Q 004113 449 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGN 528 (773)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~ 528 (773)
+.++.||++|+.. .||||+|||.+|+++.+.
T Consensus 172 -------------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~- 202 (267)
T cd07476 172 -------------------------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG- 202 (267)
T ss_pred -------------------------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC-
Confidence 2567899999754 388999999999999887
Q ss_pred CCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCC----CCHHHHHHHHHhcccccCCC
Q 004113 529 DTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPT----FSPSEIKSAVMTTATQTNNL 588 (773)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~----ls~~~Ik~~L~~TA~~~~~~ 588 (773)
+.|..++|||||||||||++|||+|++|. +++++||++|++||+++...
T Consensus 203 -----------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 203 -----------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred -----------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 78999999999999999999999999887 89999999999999998754
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-44 Score=386.59 Aligned_cols=283 Identities=35% Similarity=0.514 Sum_probs=218.6
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeecccccccc---------CCCCCCC
Q 004113 137 ESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVV---------ANGQSPR 207 (773)
Q Consensus 137 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~---------~~~~~~~ 207 (773)
|+||+|||||+|||++||+|.+.. ..+.++...++|....... .......
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999998532 1223444444444332100 0011245
Q ss_pred CCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCC
Q 004113 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSA 287 (773)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 287 (773)
|..+|||||||+|+|...+ ...+.|+||+|+|+.+|++...+.+...+++++|+++++++++|||||||...
T Consensus 60 ~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~ 131 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV 131 (295)
T ss_pred CCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 6889999999999998644 33468999999999999998665788899999999999999999999999765
Q ss_pred CCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--ccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccC
Q 004113 288 GIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSV--VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFS 365 (773)
Q Consensus 288 ~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~ 365 (773)
. ...+.+..+++++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 132 ~----~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~--------------------- 186 (295)
T cd07474 132 N----GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV--------------------- 186 (295)
T ss_pred C----CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc---------------------
Confidence 2 2456777888999999999999999998765544 445689999998641100
Q ss_pred CCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccc
Q 004113 366 NLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV 445 (773)
Q Consensus 366 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~ 445 (773)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCC-CCCCCCCCccCceEeCCccEEee
Q 004113 446 ASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARG-PSPLTRNILKPDITAPGVNILAA 524 (773)
Q Consensus 446 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G-p~~~~d~~iKPDI~APG~~I~sa 524 (773)
........|+++| ++. +..+||||+|||++|.++
T Consensus 187 -------------------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~ 221 (295)
T cd07474 187 -------------------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMST 221 (295)
T ss_pred -------------------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEee
Confidence 0012334455554 444 588999999999999999
Q ss_pred ecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCC
Q 004113 525 WMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYD 604 (773)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 604 (773)
+.... +.|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..
T Consensus 222 ~~~~~----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~~~~ 284 (295)
T cd07474 222 APGSG----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYPVSR 284 (295)
T ss_pred ccCCC----------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCChhc
Confidence 87632 678999999999999999999999999999999999999999999876531 1124579
Q ss_pred CCccccccccc
Q 004113 605 FGAGEVSTTAS 615 (773)
Q Consensus 605 ~G~G~id~~~A 615 (773)
+|+|+||+.+|
T Consensus 285 ~G~G~l~~~~A 295 (295)
T cd07474 285 QGAGRVDALRA 295 (295)
T ss_pred cCcceeccccC
Confidence 99999999987
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=4.6e-45 Score=387.82 Aligned_cols=261 Identities=27% Similarity=0.349 Sum_probs=189.8
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCCCCccccccc-----------------CCCCCCcccCCceeEeeeeccccc-cc
Q 004113 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCN-----------------AGNDNVSFSCNRKIIGARFYDIED-DV 199 (773)
Q Consensus 138 ~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~-----------------~g~~f~~~~~n~ki~~~~~~~~~~-~~ 199 (773)
|+|+|||||||||++||+|.+. .|....+ .|.+|......+++++...+.... .+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999864 2221111 122332222222222222111110 01
Q ss_pred c-CCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcE
Q 004113 200 V-ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDV 278 (773)
Q Consensus 200 ~-~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dV 278 (773)
+ .+...+.+..+|||||||||+|...++ ..+.||||+|+|+.+|++... .....++++||+||+++|++|
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~g-~~~~~~i~~Ai~~a~~~g~~I 144 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPNG-DERDKDIANAIRYAVDNGAKV 144 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecCC-CcCHHHHHHHHHHHHHCCCcE
Confidence 1 122344568999999999999986442 235899999999999998643 567788999999999999999
Q ss_pred EEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc---c--------cCCCcEEEEcccccCcceee
Q 004113 279 LSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSV---V--------NFAPWIFTVAASTIDRDFES 347 (773)
Q Consensus 279 IN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~---~--------~~~p~vitVga~~~~~~~~~ 347 (773)
||||||... ......+..++.++.++|+++|+||||+|...... + ...+++|+||++....
T Consensus 145 iN~S~G~~~----~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~---- 216 (291)
T cd07483 145 INMSFGKSF----SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY---- 216 (291)
T ss_pred EEeCCCCCC----CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC----
Confidence 999999754 12235567778889999999999999998543211 1 1124556666532210
Q ss_pred EEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhccc
Q 004113 348 DIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGV 427 (773)
Q Consensus 348 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~ 427 (773)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCC
Q 004113 428 KSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTR 507 (773)
Q Consensus 428 ~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d 507 (773)
....++.||++|+.
T Consensus 217 --------------------------------------------------------------~~~~~~~~Sn~G~~---- 230 (291)
T cd07483 217 --------------------------------------------------------------ENNLVANFSNYGKK---- 230 (291)
T ss_pred --------------------------------------------------------------CcccccccCCCCCC----
Confidence 01257889999974
Q ss_pred CCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 508 NILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 508 ~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
+|||.|||++|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 231 ---~vdi~APG~~i~s~~~~------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 231 ---NVDVFAPGERIYSTTPD------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred ---ceEEEeCCCCeEeccCc------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 45999999999999876 78999999999999999999999999999999999999999984
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.5e-45 Score=375.04 Aligned_cols=235 Identities=26% Similarity=0.389 Sum_probs=193.4
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHh
Q 004113 140 TIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAST 219 (773)
Q Consensus 140 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 219 (773)
|+|||||||||++||+|.+... ..+++.. ....|..+||||||||
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~---------------------------~~~~~~~--------~~~~~~~~HGT~vAgi 45 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI---------------------------ARLFFAG--------PGAPAPSAHGTAVASL 45 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc---------------------------ccccCCC--------CCCCCCCCCHHHHHHH
Confidence 6899999999999999974311 1111110 2355688999999999
Q ss_pred hccCCcCCCcccccccceeeeccCCceEEEEEeecCC---CCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCc
Q 004113 220 AAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE---YGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDD 296 (773)
Q Consensus 220 iag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~---g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~ 296 (773)
|+|...+ . .||||+|+|+.+|++... ..+...++++||+||++.|++|||||||... ..
T Consensus 46 ia~~~~~---------~--~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-------~~ 107 (239)
T cd05561 46 LAGAGAQ---------R--PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-------NA 107 (239)
T ss_pred HhCCCCC---------C--cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-------CH
Confidence 9998522 1 799999999999999865 2367788999999999999999999999643 24
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceee
Q 004113 297 PIALGAFHAVEHGITVVCSAGNDGPSS-GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPL 375 (773)
Q Consensus 297 ~~~~~~~~a~~~Gi~vV~aAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 375 (773)
.++.++.++.++|++||+||||+|... ..++...+++|+|++++.
T Consensus 108 ~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~---------------------------------- 153 (239)
T cd05561 108 LLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA---------------------------------- 153 (239)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC----------------------------------
Confidence 677778899999999999999999653 344556688888887432
Q ss_pred EEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEE
Q 004113 376 IYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLT 455 (773)
Q Consensus 376 v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~ 455 (773)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCC
Q 004113 456 VISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPE 535 (773)
Q Consensus 456 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~ 535 (773)
.+.++.||++|+.. ||.|||++|+++.+.
T Consensus 154 -----------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-------- 182 (239)
T cd05561 154 -----------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPG-------- 182 (239)
T ss_pred -----------------------------------CCCccccCCCCCcc--------eEEccccceecccCC--------
Confidence 13567899999865 999999999998776
Q ss_pred CCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcc
Q 004113 536 GKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAG 608 (773)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 608 (773)
+.|..++|||||||||||++|||+|++| +++++||++|++||+++...+ .+..||||
T Consensus 183 ----~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~-----------~d~~~G~G 239 (239)
T cd05561 183 ----GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPG-----------RDPVFGYG 239 (239)
T ss_pred ----CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCC-----------cCCCcCCC
Confidence 7899999999999999999999999999 999999999999999887654 67789998
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.5e-44 Score=373.49 Aligned_cols=246 Identities=29% Similarity=0.340 Sum_probs=197.3
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCC-CCCCCCCchhhH
Q 004113 139 DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQS-PRDMVGHGTHVA 217 (773)
Q Consensus 139 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~-~~d~~gHGThVA 217 (773)
||+||||||||+++||+|..... ..+.++.+.++|.++. .. ..|..+||||||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~~------~~~~~~~~~HGT~va 54 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDNS------NNTNYTDDDHGTAVL 54 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc--------------------ccCCceeeeecCccCC------CCCCCCCCCchhhhh
Confidence 79999999999999999952210 1234667777776553 22 367889999999
Q ss_pred HhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC--CCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCC----
Q 004113 218 STAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE--YGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVR---- 291 (773)
Q Consensus 218 Giiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~--g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~---- 291 (773)
|||+|+. .+.+.||||+|+|+.+|+.... ......+++.+++++.+.+++|||||||.......
T Consensus 55 giia~~~----------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~ 124 (261)
T cd07493 55 STMAGYT----------PGVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSY 124 (261)
T ss_pred eeeeeCC----------CCCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccc
Confidence 9999974 2336899999999999987543 12345678999999999999999999998652101
Q ss_pred -----CCCCcHHHHHHHHHHhCCcEEEEecCCCCCC---CCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeec
Q 004113 292 -----PLTDDPIALGAFHAVEHGITVVCSAGNDGPS---SGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESIN 363 (773)
Q Consensus 292 -----~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~---~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~ 363 (773)
......+..+++++.++|+++|+||||+|.. ....+...+++|+|||.+.
T Consensus 125 ~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~---------------------- 182 (261)
T cd07493 125 TYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA---------------------- 182 (261)
T ss_pred ccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc----------------------
Confidence 0112456778888999999999999999976 2344556789999998432
Q ss_pred cCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCc
Q 004113 364 FSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR 443 (773)
Q Consensus 364 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~ 443 (773)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEe
Q 004113 444 AVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILA 523 (773)
Q Consensus 444 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~s 523 (773)
.+.++.||++||+. ++++||||+|||.+|++
T Consensus 183 -----------------------------------------------~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~ 213 (261)
T cd07493 183 -----------------------------------------------NGNKASFSSIGPTA--DGRLKPDVMALGTGIYV 213 (261)
T ss_pred -----------------------------------------------CCCCCccCCcCCCC--CCCcCCceEecCCCeEE
Confidence 13678899999987 68999999999999998
Q ss_pred eecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 524 AWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 524 a~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
.... +.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 214 ~~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 214 INGD------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EcCC------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 6655 78999999999999999999999999999999999999999985
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.9e-43 Score=371.30 Aligned_cols=247 Identities=31% Similarity=0.405 Sum_probs=195.0
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhh
Q 004113 137 ESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHV 216 (773)
Q Consensus 137 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThV 216 (773)
|+||+|||||+||+++||+|.+. |.+..... + ...+.+.+.. .....+.|..+|||||
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~~--~---------~~~~~~~d~~---~~~~~~~d~~~HGT~v 58 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGGS--A---------DHDYNWFDPV---GNTPLPYDDNGHGTHT 58 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCCC--c---------ccccccccCC---CCCCCCCCCCCchhhh
Confidence 89999999999999999999863 11110000 0 0000000000 1124566788999999
Q ss_pred HHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh------------CCCcEEEeccC
Q 004113 217 ASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA------------DGVDVLSLSLG 284 (773)
Q Consensus 217 AGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~------------~g~dVIN~SlG 284 (773)
||||+|...+ +...||||+|+|+.+|++... .+...+++++++++++ .+++|||||||
T Consensus 59 agii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G 128 (264)
T cd07481 59 MGTMVGNDGD---------GQQIGVAPGARWIACRALDRN-GGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWG 128 (264)
T ss_pred hhheeecCCC---------CCceEECCCCeEEEEEeecCC-CCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCC
Confidence 9999987532 223899999999999999887 4788899999999975 78999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC---cccCCCcEEEEcccccCcceeeEEEECCceEEeeee
Q 004113 285 GSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGS---VVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGES 361 (773)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~ 361 (773)
... . ....+..++..+.++|++||+||||++..... .+...|++|+||+++.
T Consensus 129 ~~~---~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~-------------------- 183 (264)
T cd07481 129 GPS---G--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR-------------------- 183 (264)
T ss_pred cCC---C--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC--------------------
Confidence 765 2 34556667788889999999999999865433 3445688888887532
Q ss_pred eccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCC
Q 004113 362 INFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQ 441 (773)
Q Consensus 362 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~ 441 (773)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccE
Q 004113 442 SRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNI 521 (773)
Q Consensus 442 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I 521 (773)
.+.++.||++||.. .+++||||+|||.+|
T Consensus 184 -------------------------------------------------~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i 212 (264)
T cd07481 184 -------------------------------------------------NDVLADFSSRGPST--YGRIKPDISAPGVNI 212 (264)
T ss_pred -------------------------------------------------CCCCccccCCCCCC--CCCcCceEEECCCCe
Confidence 23678999999987 489999999999999
Q ss_pred EeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 004113 522 LAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPT--FSPSEIKSAVMTTAT 583 (773)
Q Consensus 522 ~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~--ls~~~Ik~~L~~TA~ 583 (773)
.++.+. +.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 213 ~s~~~~------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 213 RSAVPG------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EEecCC------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999987 78999999999999999999999999999 999999999999985
No 15
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=4.5e-43 Score=379.38 Aligned_cols=221 Identities=28% Similarity=0.382 Sum_probs=167.4
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCC--CCHHHHHHHHHHHhhCCCcEEEeccC
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYG--CTGSNILAAFDDAIADGVDVLSLSLG 284 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~--~~~~~i~~ai~~a~~~g~dVIN~SlG 284 (773)
.|+.+|||||||||||+..+ +..+.||||+|+|+.+|+++...+ +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 47889999999999998533 234689999999999999875422 23457999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHH-HHhCCcEEEEecCCCCCCCCCccc---CCCcEEEEcccccCcceeeEEEECCceEEeee
Q 004113 285 GSAGIVRPLTDDPIALGAFH-AVEHGITVVCSAGNDGPSSGSVVN---FAPWIFTVAASTIDRDFESDIVLGGNKVIKGE 360 (773)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~-a~~~Gi~vV~aAGN~g~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~ 360 (773)
.... .. ....+..++.+ +.++|+++|+||||+|+...++.. ..+++|+|||..........
T Consensus 254 ~~~~--~~-~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------ 318 (412)
T cd04857 254 EATH--WP-NSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------ 318 (412)
T ss_pred cCCC--Cc-cchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc------------
Confidence 8752 11 11233334443 457899999999999987766543 35899999996432100000
Q ss_pred eeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeC
Q 004113 361 SINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDD 440 (773)
Q Consensus 361 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~ 440 (773)
|.+
T Consensus 319 ------------y~~----------------------------------------------------------------- 321 (412)
T cd04857 319 ------------YSL----------------------------------------------------------------- 321 (412)
T ss_pred ------------ccc-----------------------------------------------------------------
Confidence 000
Q ss_pred CCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCcc
Q 004113 441 QSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVN 520 (773)
Q Consensus 441 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~ 520 (773)
.....+.++.||||||+. |+++||||+|||+.
T Consensus 322 ----------------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~ 353 (412)
T cd04857 322 ----------------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGA 353 (412)
T ss_pred ----------------------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCc
Confidence 001135789999999998 79999999999999
Q ss_pred EEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccc
Q 004113 521 ILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSEIKSAVMTTATQT 585 (773)
Q Consensus 521 I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~ls~~~Ik~~L~~TA~~~ 585 (773)
|.+.-... ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 354 I~s~p~~~----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 354 IASVPNWT----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred EEEcccCC----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 98752211 16789999999999999999999985 478999999999999999864
No 16
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=3.9e-43 Score=370.81 Aligned_cols=264 Identities=27% Similarity=0.308 Sum_probs=202.4
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
++|..+++|+||+|||||||||++||+|.+..... .+. .....+.+.... +.......|
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------~~~------~~~~~~~~~~~~--~~~~~~~~~ 59 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------GYD------PAVNGYNFVPNV--GDIDNDVSV 59 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------Ccc------cccCCccccccc--CCcCCCCCC
Confidence 38999999999999999999999999998651100 000 000000000000 001234567
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||||+|+..+.....|.+ .+.|+||+|+|+.+|++...+.....+++++|+++++.|++|||||||...
T Consensus 60 ~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~- 136 (273)
T cd07485 60 GGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG- 136 (273)
T ss_pred CCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC-
Confidence 88999999999999864432222221 346799999999999999876678889999999999999999999999865
Q ss_pred CCCCCCCcHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeee
Q 004113 289 IVRPLTDDPIALGAFHAVEH-------GITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGES 361 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~-------Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~ 361 (773)
...+...+..++..+.++ |+++|+||||++......+...+++|+|++++.
T Consensus 137 --~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~-------------------- 194 (273)
T cd07485 137 --GGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT-------------------- 194 (273)
T ss_pred --ccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC--------------------
Confidence 234556677777888887 999999999999876666667789999998532
Q ss_pred eccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCC
Q 004113 362 INFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQ 441 (773)
Q Consensus 362 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~ 441 (773)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCc-c
Q 004113 442 SRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGV-N 520 (773)
Q Consensus 442 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~-~ 520 (773)
.+.++.||++|+.. ||+|||+ .
T Consensus 195 -------------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~~ 217 (273)
T cd07485 195 -------------------------------------------------NDNKASFSNYGRWV--------DIAAPGVGT 217 (273)
T ss_pred -------------------------------------------------CCCcCccccCCCce--------EEEeCCCCc
Confidence 13667899999876 9999999 8
Q ss_pred EEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 004113 521 ILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPT-FSPSEIKSAVMTT 581 (773)
Q Consensus 521 I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~-ls~~~Ik~~L~~T 581 (773)
|+++.+.... ...+.|..++|||||||+|||++|||+|++|+ ++++|||++|++|
T Consensus 218 i~~~~~~~~~------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 218 ILSTVPKLDG------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred cccccccccC------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9888765311 11267999999999999999999999999999 9999999999986
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.8e-43 Score=368.36 Aligned_cols=258 Identities=31% Similarity=0.477 Sum_probs=205.8
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhh
Q 004113 137 ESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHV 216 (773)
Q Consensus 137 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThV 216 (773)
|+||+|+|||+||+++||+|.+.... . +.+.... .......|..+|||||
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~-----------------------~~~~~~~---~~~~~~~d~~~HGT~v 50 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----F-----------------------ADFVNTV---NGRTTPYDDNGHGTHV 50 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----c-----------------------ccccccc---cCCCCCCCCCCchHHH
Confidence 89999999999999999999864210 0 0000000 0124566788999999
Q ss_pred HHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhC----CCcEEEeccCCCCCCCCC
Q 004113 217 ASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIAD----GVDVLSLSLGGSAGIVRP 292 (773)
Q Consensus 217 AGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~----g~dVIN~SlG~~~~~~~~ 292 (773)
||||+|...+. ...+.||||+|+|+.+|+++..+.....++++||+|+++. +++|||||||.... ..
T Consensus 51 Agiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~--~~ 121 (264)
T cd07487 51 AGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPD--PS 121 (264)
T ss_pred HHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCC--CC
Confidence 99999986431 3446999999999999999988677889999999999998 99999999998763 35
Q ss_pred CCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC--CcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCC
Q 004113 293 LTDDPIALGAFHAVEHGITVVCSAGNDGPSSG--SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKS 370 (773)
Q Consensus 293 ~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~ 370 (773)
...+.+..++.++.++|++||+||||++.... ..+...+++|+||+++.+..
T Consensus 122 ~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~-------------------------- 175 (264)
T cd07487 122 YGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP-------------------------- 175 (264)
T ss_pred CCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC--------------------------
Confidence 56678888889999999999999999997765 44456789999998654310
Q ss_pred CceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCc
Q 004113 371 PVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYG 450 (773)
Q Consensus 371 ~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 450 (773)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCC
Q 004113 451 TFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDT 530 (773)
Q Consensus 451 ~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~ 530 (773)
....++.||++||+. ++++||||+|||++|+++.+....
T Consensus 176 ---------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~ 214 (264)
T cd07487 176 ---------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGN 214 (264)
T ss_pred ---------------------------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccc
Confidence 002578899999988 699999999999999998653210
Q ss_pred CCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 531 GEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 531 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
. .....+.|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 215 ~---~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 215 P---GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred c---CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 0 1122378899999999999999999999999999999999999999985
No 18
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.5e-42 Score=362.91 Aligned_cols=233 Identities=33% Similarity=0.462 Sum_probs=195.6
Q ss_pred CCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCC
Q 004113 130 SLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDM 209 (773)
Q Consensus 130 ~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~ 209 (773)
.|..+++|+||+|||||+||+++||+|.++ +...+++... ....|.
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~-------~~~~d~ 62 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG-------DPDSDC 62 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------CCCCCC
Confidence 777889999999999999999999999743 1222222221 225678
Q ss_pred CCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhC-----CCcEEEeccC
Q 004113 210 VGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIAD-----GVDVLSLSLG 284 (773)
Q Consensus 210 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~-----g~dVIN~SlG 284 (773)
.+|||||||||+++. .||||+|+|+.+|+++..+....++++++++++++. +++|||||||
T Consensus 63 ~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g 128 (255)
T cd04077 63 NGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLG 128 (255)
T ss_pred CccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCC
Confidence 899999999999863 699999999999999987677889999999999986 5899999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeec
Q 004113 285 GSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS-GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESIN 363 (773)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~ 363 (773)
... ...+..++.++.++|+++|+||||+|... ...+...|++|+||+++.+
T Consensus 129 ~~~-------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--------------------- 180 (255)
T cd04077 129 GGA-------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--------------------- 180 (255)
T ss_pred CCC-------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC---------------------
Confidence 754 35666777889999999999999999765 3445567899999985431
Q ss_pred cCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCc
Q 004113 364 FSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR 443 (773)
Q Consensus 364 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~ 443 (773)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEe
Q 004113 444 AVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILA 523 (773)
Q Consensus 444 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~s 523 (773)
+.++.||++||.. ||+|||.+|.+
T Consensus 181 ------------------------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~ 204 (255)
T cd04077 181 ------------------------------------------------DARASFSNYGSCV--------DIFAPGVDILS 204 (255)
T ss_pred ------------------------------------------------CCccCcccCCCCC--------cEEeCCCCeEe
Confidence 2578899999976 99999999999
Q ss_pred eecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 004113 524 AWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584 (773)
Q Consensus 524 a~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~ 584 (773)
+..... +.|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 205 ~~~~~~----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 205 AWIGSD----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred cccCCC----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 887421 789999999999999999999999999999999999999999974
No 19
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-43 Score=365.51 Aligned_cols=333 Identities=26% Similarity=0.381 Sum_probs=259.5
Q ss_pred CCCCceEEEEeccCCCCCCCchhHHHHHHHHHhcccC-----c----------------cEEEEec---ceeeEEEEEcC
Q 004113 27 GSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKK-----N----------------SIIRSYK---HGFSGFAARLS 82 (773)
Q Consensus 27 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------------~~~~~y~---~~~ng~s~~l~ 82 (773)
+..+.+|||.|+... . +...+.|.++++..+.... + .+...|. ..|+|+.-..+
T Consensus 77 ~~~~~~YiV~f~~~~-~-q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft 154 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDA-S-QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFT 154 (501)
T ss_pred cccccceEEEeCCCc-c-HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccc
Confidence 346789999999666 4 4556667777776654321 1 1333332 26778888889
Q ss_pred HHHHHHHhCCCCeEEEecCceecccc-----ccCccccCcccccccCCCCCCCCC----CCCCCCCcEEEEEccCCCCCC
Q 004113 83 AEEAHALSKKPGVVSIFPDPVLQLHT-----TRSWDFLKIQTDVLIDSVPSPSLN----SQDQESDTIIGILDTGVWPES 153 (773)
Q Consensus 83 ~~~i~~L~~~p~V~~V~~~~~~~~~~-----~~~~~~~gl~~~~~~~~~~~~~~~----~~~~G~Gv~VaVIDtGid~~H 153 (773)
.+-+..++++|-++.++++..++... .+....|+|-+..++....-..|- ....|+||...|+||||+..|
T Consensus 155 ~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H 234 (501)
T KOG1153|consen 155 GESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEH 234 (501)
T ss_pred cceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccc
Confidence 99999999999999999988776543 344445666665543321111221 234799999999999999999
Q ss_pred CCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHhhccCCcCCCccccc
Q 004113 154 ESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGL 233 (773)
Q Consensus 154 p~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~ 233 (773)
|+|.++ +.| |.|.. ......|++||||||||+|++..
T Consensus 235 ~dFegR------a~w-Ga~i~---------------------------~~~~~~D~nGHGTH~AG~I~sKt--------- 271 (501)
T KOG1153|consen 235 PDFEGR------AIW-GATIP---------------------------PKDGDEDCNGHGTHVAGLIGSKT--------- 271 (501)
T ss_pred cccccc------eec-ccccC---------------------------CCCcccccCCCcceeeeeeeccc---------
Confidence 999865 233 22211 01345689999999999999885
Q ss_pred ccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhC---------CCcEEEeccCCCCCCCCCCCCcHHHHHHHH
Q 004113 234 AAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIAD---------GVDVLSLSLGGSAGIVRPLTDDPIALGAFH 304 (773)
Q Consensus 234 ~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~---------g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~ 304 (773)
.|||.+++|+++||+.++|.+..+++++++|++++. +..|.|||+|+... -++..|++.
T Consensus 272 -----~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S-------~aLn~AV~~ 339 (501)
T KOG1153|consen 272 -----FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS-------AALNMAVNA 339 (501)
T ss_pred -----cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc-------HHHHHHHHH
Confidence 799999999999999999999999999999999975 57899999998762 567888899
Q ss_pred HHhCCcEEEEecCCCCCCCC-CcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCc
Q 004113 305 AVEHGITVVCSAGNDGPSSG-SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKK 383 (773)
Q Consensus 305 a~~~Gi~vV~aAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~ 383 (773)
|.+.||++++||||+..+.+ +.+..+..+|+|||++..
T Consensus 340 A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~----------------------------------------- 378 (501)
T KOG1153|consen 340 ASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN----------------------------------------- 378 (501)
T ss_pred HhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-----------------------------------------
Confidence 99999999999999987654 445577899999997542
Q ss_pred CccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHH
Q 004113 384 DDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAA 463 (773)
Q Consensus 384 ~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~ 463 (773)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcce
Q 004113 464 EILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFN 543 (773)
Q Consensus 464 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~ 543 (773)
+.+|.||+||++. ||.|||++|+|+|.+.. ....
T Consensus 379 ----------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~----------~at~ 412 (501)
T KOG1153|consen 379 ----------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN----------NATA 412 (501)
T ss_pred ----------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCc----------cchh
Confidence 4899999999999 99999999999998743 5678
Q ss_pred eeccccchhhHHHHHHHHHHhhCCC---------CCHHHHHHHHHhccc
Q 004113 544 VISGTSMSCPHISGVVAAIKHQNPT---------FSPSEIKSAVMTTAT 583 (773)
Q Consensus 544 ~~sGTSmAaP~VAG~aALl~~~~p~---------ls~~~Ik~~L~~TA~ 583 (773)
..||||||+|||||++|..+..+|. .++.++|..+..-..
T Consensus 413 ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 413 ILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred eeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 9999999999999999999999873 378888887776554
No 20
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-42 Score=368.78 Aligned_cols=264 Identities=25% Similarity=0.254 Sum_probs=187.1
Q ss_pred EEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHhh
Q 004113 141 IIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTA 220 (773)
Q Consensus 141 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGii 220 (773)
+|||||||||.+||+|...- .....+... .....|..||||||||||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~~------~~~~~d~~gHGT~vAgii 48 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSDE------PGWTADDLGHGTAVAGLA 48 (291)
T ss_pred EEEEecCCCCCCChhhhhhh---------------------------ccccccccC------CCCcCCCCCChHHHHHHH
Confidence 79999999999999997431 111111110 012568999999999999
Q ss_pred ccCCcCCCcccccccceeeeccCCceEEEEEeecCCC----CCCHHHHHHHHHHHhhCC---CcEEEeccCCCCCCCCCC
Q 004113 221 AGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY----GCTGSNILAAFDDAIADG---VDVLSLSLGGSAGIVRPL 293 (773)
Q Consensus 221 ag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g----~~~~~~i~~ai~~a~~~g---~dVIN~SlG~~~~~~~~~ 293 (773)
++...+ .....|+||+|+|+.+|++...+ .....++++||+|+++.+ ++|||||||....... .
T Consensus 49 a~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~-~ 119 (291)
T cd04847 49 LYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDD-G 119 (291)
T ss_pred HcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccC-C
Confidence 976432 12357999999999999999863 356678999999999853 5999999998753111 1
Q ss_pred CCcHHHHHHHH-HHhCCcEEEEecCCCCCCCCCc------------ccCCCcEEEEcccccCcceeeEEEECCceEEeee
Q 004113 294 TDDPIALGAFH-AVEHGITVVCSAGNDGPSSGSV------------VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGE 360 (773)
Q Consensus 294 ~~~~~~~~~~~-a~~~Gi~vV~aAGN~g~~~~~~------------~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~ 360 (773)
....+..++++ +.++|++||+||||++...... +..++++|+|||++.+.........
T Consensus 120 ~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~--------- 190 (291)
T cd04847 120 RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY--------- 190 (291)
T ss_pred CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc---------
Confidence 11234444443 5689999999999999765432 3346799999997654311000000
Q ss_pred eeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeC
Q 004113 361 SINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDD 440 (773)
Q Consensus 361 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~ 440 (773)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCcc
Q 004113 441 QSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVN 520 (773)
Q Consensus 441 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~ 520 (773)
+.......+.||+|||.. ++.+||||+|||++
T Consensus 191 ----------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~ 222 (291)
T cd04847 191 ----------------------------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGN 222 (291)
T ss_pred ----------------------------------------------cccccccCCCccccCCCC--CCCcCCcEEeeCCc
Confidence 000011234499999998 69999999999999
Q ss_pred EEeeecCCCCC------CCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 521 ILAAWMGNDTG------EAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 521 I~sa~~~~~~~------~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
|.+........ ..........|..++|||||||+|||++|||++++|++++++||++|++||+
T Consensus 223 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 223 LAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred eeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 98865421100 0001122378999999999999999999999999999999999999999985
No 21
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=8.3e-42 Score=358.56 Aligned_cols=240 Identities=31% Similarity=0.384 Sum_probs=202.8
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|..+ +|+||+|||||+||+++||+|... ++...+++.+.. ..+.|
T Consensus 20 ~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~~------~~~~d 66 (260)
T cd07484 20 KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDND------SDAMD 66 (260)
T ss_pred HHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCCC------CCCCC
Confidence 688888 999999999999999999998432 222223333221 34667
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||||++...+ ...+.|+||+|+|+.+|++...+.+...+++++|+++++.+++|||||||...
T Consensus 67 ~~~HGT~vagii~~~~~~--------~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~- 137 (260)
T cd07484 67 DNGHGTHVAGIIAAATNN--------GTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL- 137 (260)
T ss_pred CCCcHHHHHHHHhCccCC--------CCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC-
Confidence 889999999999987533 23358999999999999998876788889999999999999999999999764
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCC
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 368 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 368 (773)
....+..++..+.++|++||+||||+|.....++...+++|+||+.+.+
T Consensus 138 -----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------- 186 (260)
T cd07484 138 -----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD-------------------------- 186 (260)
T ss_pred -----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC--------------------------
Confidence 3356777778889999999999999998877888888999999985321
Q ss_pred CCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccccc
Q 004113 369 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 448 (773)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 448 (773)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCC
Q 004113 449 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGN 528 (773)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~ 528 (773)
+.++.||++|+.. |++|||.+|.+..+.
T Consensus 187 -------------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~- 214 (260)
T cd07484 187 -------------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD- 214 (260)
T ss_pred -------------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC-
Confidence 3567889999865 999999999998876
Q ss_pred CCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 004113 529 DTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQT 585 (773)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~ 585 (773)
+.|..++|||||||+|||++||+++++| +++++||++|++||+++
T Consensus 215 -----------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 215 -----------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred -----------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 7899999999999999999999999999 99999999999999876
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-41 Score=354.03 Aligned_cols=253 Identities=30% Similarity=0.406 Sum_probs=188.2
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHH
Q 004113 139 DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAS 218 (773)
Q Consensus 139 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAG 218 (773)
||+|||||+|||++||+|.+... ...+|..+.. .......|..+|||||||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~---------------------------~~~~~~~~~~--~~~~~~~d~~~HGT~vAg 51 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA---------------------------QWADFDENRR--ISATEVFDAGGHGTHVSG 51 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC---------------------------CceeccCCCC--CCCCCCCCCCCcHHHHHH
Confidence 79999999999999999975311 1111111000 012345678899999999
Q ss_pred hhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHH
Q 004113 219 TAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPI 298 (773)
Q Consensus 219 iiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~ 298 (773)
||+|+.. +....||||+|+|+.+|++... ++...+++++|+|+++.+++|||||||.... . .+.+
T Consensus 52 iia~~~~---------~~~~~GvAp~a~i~~~~v~~~~-~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~---~--~~~~ 116 (254)
T cd07490 52 TIGGGGA---------KGVYIGVAPEADLLHGKVLDDG-GGSLSQIIAGMEWAVEKDADVVSMSLGGTYY---S--EDPL 116 (254)
T ss_pred HHhcCCC---------CCCEEEECCCCEEEEEEEecCC-CCcHHHHHHHHHHHHhCCCCEEEECCCcCCC---C--CcHH
Confidence 9999863 2335799999999999999887 4788999999999999999999999998762 2 4556
Q ss_pred HHHHHHHHh-CCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEE
Q 004113 299 ALGAFHAVE-HGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIY 377 (773)
Q Consensus 299 ~~~~~~a~~-~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~ 377 (773)
..+++...+ +|++||+||||+|......+...+++|+||+++.+.........
T Consensus 117 ~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~-------------------------- 170 (254)
T cd07490 117 EEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF-------------------------- 170 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC--------------------------
Confidence 655565554 69999999999998766666778999999997543210000000
Q ss_pred cCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEe
Q 004113 378 AKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVI 457 (773)
Q Consensus 378 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i 457 (773)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCC
Q 004113 458 SSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGK 537 (773)
Q Consensus 458 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~ 537 (773)
........+.+|... +...||||+|||.+|+++.... .
T Consensus 171 ---------------------------------g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~--------~ 208 (254)
T cd07490 171 ---------------------------------GSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA--------N 208 (254)
T ss_pred ---------------------------------cccccccccCCCCCc-cCCcCceEEeccCCeEccccCC--------C
Confidence 001122223344332 4678999999999999865221 1
Q ss_pred CCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 538 EPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 538 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
..+.|..++|||||||+|||++|||+|++|++++.+||++|++||+
T Consensus 209 ~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 209 GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 1278999999999999999999999999999999999999999985
No 23
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-41 Score=359.58 Aligned_cols=254 Identities=23% Similarity=0.308 Sum_probs=183.7
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCC
Q 004113 128 SPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPR 207 (773)
Q Consensus 128 ~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~ 207 (773)
..+|+.+++|+||+||||||||+..|| |...++ .+. + .+..+ ......
T Consensus 11 ~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~~---------------~----~~~~~-----~~~~~~ 58 (298)
T cd07494 11 TRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QVR---------------V----VLAPG-----ATDPAC 58 (298)
T ss_pred hHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cce---------------e----ecCCC-----CCCCCC
Confidence 369999999999999999999999888 654321 000 0 00000 013356
Q ss_pred CCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCC
Q 004113 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSA 287 (773)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 287 (773)
|..||||||||++ .||||+|+|+.+|++.. ...+++++|+||++++++|||||||...
T Consensus 59 D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~----~~~~~~~ai~~a~~~g~dVIn~SlG~~~ 116 (298)
T cd07494 59 DENGHGTGESANL------------------FAIAPGAQFIGVKLGGP----DLVNSVGAFKKAISLSPDIISNSWGYDL 116 (298)
T ss_pred CCCCcchheeece------------------eEeCCCCeEEEEEccCC----CcHHHHHHHHHHHhcCCCEEEeecccCC
Confidence 7889999999865 58999999999999864 4567899999999999999999999864
Q ss_pred CCCC-------CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeee
Q 004113 288 GIVR-------PLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGE 360 (773)
Q Consensus 288 ~~~~-------~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~ 360 (773)
.... .....++..++.+|.++|++||+||||++. .++...|++|+||+++.+.. +..
T Consensus 117 ~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~---- 180 (298)
T cd07494 117 RSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GAR---- 180 (298)
T ss_pred CCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Ccc----
Confidence 2101 012345778888899999999999999874 45778899999999754320 000
Q ss_pred eeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeC
Q 004113 361 SINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDD 440 (773)
Q Consensus 361 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~ 440 (773)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCce------
Q 004113 441 QSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDI------ 514 (773)
Q Consensus 441 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI------ 514 (773)
......+.|++. ..+++.|||+
T Consensus 181 ------------------------------------------------~~~~~~~~~~s~----~~~g~~~pd~~~~~g~ 208 (298)
T cd07494 181 ------------------------------------------------RASSYASGFRSK----IYPGRQVPDVCGLVGM 208 (298)
T ss_pred ------------------------------------------------cccccccCcccc----cCCCCccCccccccCc
Confidence 000001111111 1246677776
Q ss_pred ----------EeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 004113 515 ----------TAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584 (773)
Q Consensus 515 ----------~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~ 584 (773)
+|||..|.+...... ......+.|..++|||||||||||++|||+|++|.|++++||.+|++||++
T Consensus 209 ~~~~~~~~~~~APG~~i~~~~~~~~----~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~ 284 (298)
T cd07494 209 LPHAAYLMLPVPPGSQLDRSCAAFP----DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARD 284 (298)
T ss_pred CCcccccccccCCCcceeccccCCC----CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcc
Confidence 479999876553210 001112679999999999999999999999999999999999999999998
Q ss_pred cCC
Q 004113 585 TNN 587 (773)
Q Consensus 585 ~~~ 587 (773)
+..
T Consensus 285 ~~~ 287 (298)
T cd07494 285 VTK 287 (298)
T ss_pred cCC
Confidence 755
No 24
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.8e-41 Score=359.79 Aligned_cols=267 Identities=27% Similarity=0.316 Sum_probs=186.9
Q ss_pred CCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCC
Q 004113 133 SQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGH 212 (773)
Q Consensus 133 ~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gH 212 (773)
.+++|+||+|||||+|||++||+|.+... ...+|.+. ....|..+|
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~~-------~~~~d~~gH 48 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVGG-------EDVQDGHGH 48 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCCC-------CCCCCCCCc
Confidence 57899999999999999999999975321 11222221 235678999
Q ss_pred chhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCC---
Q 004113 213 GTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGI--- 289 (773)
Q Consensus 213 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~--- 289 (773)
||||||||+|+..+ +...||||+|+|+.+|++...+.....+++++|+||++.+++|||||||.....
T Consensus 49 GT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~ 119 (297)
T cd07480 49 GTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVD 119 (297)
T ss_pred HHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCccccc
Confidence 99999999997633 334799999999999999877677788899999999999999999999985410
Q ss_pred ----CCCCCCcHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCccc-----CCCcEEEEcccccCcce
Q 004113 290 ----VRPLTDDPIALGAFHA---------------VEHGITVVCSAGNDGPSSGSVVN-----FAPWIFTVAASTIDRDF 345 (773)
Q Consensus 290 ----~~~~~~~~~~~~~~~a---------------~~~Gi~vV~aAGN~g~~~~~~~~-----~~p~vitVga~~~~~~~ 345 (773)
........++.....+ .++|++||+||||++........ ..++++.|+++...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~--- 196 (297)
T cd07480 120 QGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL--- 196 (297)
T ss_pred ccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC---
Confidence 0111122233333333 67999999999999854322211 11233333322110
Q ss_pred eeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhc
Q 004113 346 ESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKD 425 (773)
Q Consensus 346 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~ 425 (773)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCC
Q 004113 426 GVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPL 505 (773)
Q Consensus 426 ~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 505 (773)
+....|+++.+.
T Consensus 197 ------------------------------------------------------------------~~~~~~~~~~~~-- 208 (297)
T cd07480 197 ------------------------------------------------------------------GRTGNFSAVANF-- 208 (297)
T ss_pred ------------------------------------------------------------------CCCCCccccCCC--
Confidence 112223333221
Q ss_pred CCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 004113 506 TRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQT 585 (773)
Q Consensus 506 ~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~ 585 (773)
...||||+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|++++.+++.+|+......
T Consensus 209 --~~~~~dv~ApG~~i~s~~~~------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~ 274 (297)
T cd07480 209 --SNGEVDIAAPGVDIVSAAPG------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAA 274 (297)
T ss_pred --CCCceEEEeCCCCeEeecCC------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhc
Confidence 23578999999999999887 8899999999999999999999999999999988888887432221
Q ss_pred CCCCCccccCCCCCCCCCCCCccccccc
Q 004113 586 NNLRAPITTNSGAAATPYDFGAGEVSTT 613 (773)
Q Consensus 586 ~~~g~~~~~~~~~~~~~~~~G~G~id~~ 613 (773)
... ..........+|+|++++.
T Consensus 275 ~~~------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 275 RTT------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred ccC------CCCCCCChhhcCCceeecC
Confidence 100 0001226678999999875
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=3.7e-41 Score=360.20 Aligned_cols=278 Identities=25% Similarity=0.309 Sum_probs=202.8
Q ss_pred CCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCC
Q 004113 133 SQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGH 212 (773)
Q Consensus 133 ~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gH 212 (773)
++++|+||+|||||+|||++||+|.+... .+.. ..++++.....+.. ...|..+|
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~---------~~~d~~~H 56 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD---------TKDDVDGH 56 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC---------CCCCCCCC
Confidence 58899999999999999999999976421 0111 12345554444332 22378999
Q ss_pred chhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCC-CCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCC
Q 004113 213 GTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY-GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVR 291 (773)
Q Consensus 213 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g-~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~ 291 (773)
||||||||+|...+... ...+.||||+|+|+.+|++...+ .....++..+++++.+.+++|||||||....
T Consensus 57 GT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~--- 128 (293)
T cd04842 57 GTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVN--- 128 (293)
T ss_pred cchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCc---
Confidence 99999999998644321 11469999999999999988763 2566678999999999999999999998762
Q ss_pred CCCCcHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---CcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCC
Q 004113 292 PLTDDPIALGAFHAV-E-HGITVVCSAGNDGPSSG---SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSN 366 (773)
Q Consensus 292 ~~~~~~~~~~~~~a~-~-~Gi~vV~aAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 366 (773)
. .......++.++. + +|++||+||||++.... ..+...+++|+|||++.+.....
T Consensus 129 ~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------------------- 188 (293)
T cd04842 129 N-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------------------- 188 (293)
T ss_pred c-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-------------------
Confidence 1 1233333444433 3 89999999999997654 45567799999999765431000
Q ss_pred CCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccc
Q 004113 367 LQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA 446 (773)
Q Consensus 367 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~ 446 (773)
..|..
T Consensus 189 -------------------------~~~~~-------------------------------------------------- 193 (293)
T cd04842 189 -------------------------EGGLG-------------------------------------------------- 193 (293)
T ss_pred -------------------------ccccc--------------------------------------------------
Confidence 00000
Q ss_pred ccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeec
Q 004113 447 SSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWM 526 (773)
Q Consensus 447 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~ 526 (773)
.......++.||++||+. ++++||||+|||++|+++..
T Consensus 194 ----------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~ 231 (293)
T cd04842 194 ----------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARS 231 (293)
T ss_pred ----------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccC
Confidence 001135789999999987 59999999999999999975
Q ss_pred CCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 004113 527 GNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQN-----P---TFSPSEIKSAVMTTAT 583 (773)
Q Consensus 527 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----p---~ls~~~Ik~~L~~TA~ 583 (773)
... .........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 232 ~~~---~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 232 GGG---GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCC---CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 420 0011223688999999999999999999999985 4 6677899999999985
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3e-41 Score=350.47 Aligned_cols=241 Identities=29% Similarity=0.371 Sum_probs=191.9
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHh
Q 004113 140 TIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAST 219 (773)
Q Consensus 140 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 219 (773)
|+|||||+||+++||+|.+.. ++...+++... .....|..+||||||||
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~------~~~~~~~~~HGT~vAgi 49 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN------NDPTSDIDGHGTACAGV 49 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC------CCCCCCCCCCHHHHHHH
Confidence 689999999999999998530 01111111111 12356789999999999
Q ss_pred hccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHHH
Q 004113 220 AAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIA 299 (773)
Q Consensus 220 iag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~ 299 (773)
|+|+..+ ...+.||||+|+|+.+|++...+.+...++.++++++++.+++|||||||.... .......+.
T Consensus 50 iag~~~~--------~~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~--~~~~~~~~~ 119 (242)
T cd07498 50 AAAVGNN--------GLGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDS--TESISSAID 119 (242)
T ss_pred HHhccCC--------CceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCC--CchHHHHHH
Confidence 9998632 234689999999999999987766788899999999999999999999998653 334556777
Q ss_pred HHHHHHHh-CCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEc
Q 004113 300 LGAFHAVE-HGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYA 378 (773)
Q Consensus 300 ~~~~~a~~-~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~ 378 (773)
.++.++.+ +|+++|+||||+|......+...+++|+||+++.+
T Consensus 120 ~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------------------ 163 (242)
T cd07498 120 NAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------------------ 163 (242)
T ss_pred HHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC------------------------------------
Confidence 77888888 99999999999998766667778999999985421
Q ss_pred CCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEec
Q 004113 379 KSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVIS 458 (773)
Q Consensus 379 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~ 458 (773)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCC
Q 004113 459 SKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKE 538 (773)
Q Consensus 459 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~ 538 (773)
+.++.||++||.. |++|||.++.......... ....
T Consensus 164 ---------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~---~~~~ 199 (242)
T cd07498 164 ---------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA---GDYP 199 (242)
T ss_pred ---------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCcccccc---ccCC
Confidence 3578899999976 9999999998875432110 1122
Q ss_pred CCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004113 539 PPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTT 581 (773)
Q Consensus 539 ~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~T 581 (773)
.+.|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 200 ~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 200 GGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred CCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 3678999999999999999999999999999999999999976
No 27
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-40 Score=347.22 Aligned_cols=250 Identities=30% Similarity=0.427 Sum_probs=192.6
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCCCCcccc---cccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCch
Q 004113 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKG---TCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGT 214 (773)
Q Consensus 138 ~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g---~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGT 214 (773)
+||+|||||||||++||+|.+. .|.. .+..+.+.+....-++..+. ++.. ...++.|..+|||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~d~~~HGT 67 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDDGNGYVDDIYGW-NFVN------NDNDPMDDNGHGT 67 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccCCCCcccCCCcc-cccC------CCCCCCCCCCcHH
Confidence 6899999999999999999864 2221 11111111110011111111 1111 2255678899999
Q ss_pred hhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCC
Q 004113 215 HVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLT 294 (773)
Q Consensus 215 hVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~ 294 (773)
||||||+|...++ ..+.||||+|+|+.+|++...+.+...+++++++++++.+++|||+|||....
T Consensus 68 ~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~------ 133 (259)
T cd07473 68 HVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP------ 133 (259)
T ss_pred HHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC------
Confidence 9999999986432 23589999999999999988866888999999999999999999999997652
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCCCCCC---CCccc--CCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCC
Q 004113 295 DDPIALGAFHAVEHGITVVCSAGNDGPSS---GSVVN--FAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQK 369 (773)
Q Consensus 295 ~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 369 (773)
...+..++.++.++|+++|+||||++... ..++. ..+++|+||+.+.
T Consensus 134 ~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~---------------------------- 185 (259)
T cd07473 134 SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS---------------------------- 185 (259)
T ss_pred CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC----------------------------
Confidence 46677778889999999999999998652 22222 3478888887532
Q ss_pred CCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccC
Q 004113 370 SPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSY 449 (773)
Q Consensus 370 ~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~ 449 (773)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCC
Q 004113 450 GTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGND 529 (773)
Q Consensus 450 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~ 529 (773)
.+.++.||++||. +||+.|||.++++....
T Consensus 186 -----------------------------------------~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~-- 215 (259)
T cd07473 186 -----------------------------------------NDALASFSNYGKK-------TVDLAAPGVDILSTSPG-- 215 (259)
T ss_pred -----------------------------------------CCCcCcccCCCCC-------CcEEEeccCCeEeccCC--
Confidence 1356679999985 46999999999997765
Q ss_pred CCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 530 TGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 530 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
+.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 216 ----------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 216 ----------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ----------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999999999999999999999999999985
No 28
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-40 Score=352.20 Aligned_cols=260 Identities=27% Similarity=0.349 Sum_probs=190.4
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccc--------CCceeEeeeeccccc-c--ccCCCCCCC
Q 004113 139 DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFS--------CNRKIIGARFYDIED-D--VVANGQSPR 207 (773)
Q Consensus 139 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~--------~n~ki~~~~~~~~~~-~--~~~~~~~~~ 207 (773)
||+|||||||||++||+|.+... .+.+|.... ...+.....++.+.. . .........
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~------------~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 68 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLL------------PGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVS 68 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccc------------cCcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCC
Confidence 79999999999999999986431 111111000 000000000000000 0 001123455
Q ss_pred CCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHh----------hCCCc
Q 004113 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAI----------ADGVD 277 (773)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~----------~~g~d 277 (773)
+..+|||||||||+|...+ ...+.||||+|+|+.+|+++.. +...+++++|++|++ .++++
T Consensus 69 ~~~~HGT~vAgiiaa~~~~--------~~~~~GvAp~a~i~~~~v~~~~-~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~ 139 (285)
T cd07496 69 PSSWHGTHVAGTIAAVTNN--------GVGVAGVAWGARILPVRVLGKC-GGTLSDIVDGMRWAAGLPVPGVPVNPNPAK 139 (285)
T ss_pred CCCCCHHHHHHHHhCcCCC--------CCCceeecCCCeEEEEEEecCC-CCcHHHHHHHHHHHhccCcCCCcccCCCCe
Confidence 6789999999999998643 2335899999999999999877 348889999999998 46789
Q ss_pred EEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCcEEEEcccccCcceeeEEEECCceE
Q 004113 278 VLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS-GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKV 356 (773)
Q Consensus 278 VIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~ 356 (773)
|||||||.... . ...+..++.++.++|++||+||||++... ...+...+++|+||+++.
T Consensus 140 Iin~S~G~~~~---~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------- 199 (285)
T cd07496 140 VINLSLGGDGA---C--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL--------------- 199 (285)
T ss_pred EEEeCCCCCCC---C--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC---------------
Confidence 99999998652 1 46677788999999999999999999765 455566789999998532
Q ss_pred EeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEE
Q 004113 357 IKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVI 436 (773)
Q Consensus 357 ~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i 436 (773)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEe
Q 004113 437 VIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITA 516 (773)
Q Consensus 437 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~A 516 (773)
.+.++.||++||.. ||+|
T Consensus 200 ------------------------------------------------------~~~~~~~S~~g~~v--------di~a 217 (285)
T cd07496 200 ------------------------------------------------------RGQRASYSNYGPAV--------DVSA 217 (285)
T ss_pred ------------------------------------------------------CCCcccccCCCCCC--------CEEe
Confidence 13678899999976 9999
Q ss_pred CCccEEeeecCCCCCC---CCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004113 517 PGVNILAAWMGNDTGE---APEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTT 581 (773)
Q Consensus 517 PG~~I~sa~~~~~~~~---~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~T 581 (773)
||++|.++........ .........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 218 pG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 218 PGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999998876532110 0112223678999999999999999999999999999999999999976
No 29
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=4.8e-40 Score=338.65 Aligned_cols=227 Identities=30% Similarity=0.463 Sum_probs=188.3
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHH
Q 004113 139 DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAS 218 (773)
Q Consensus 139 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAG 218 (773)
||+|||||+||+++||+|.+.- ...++|.... + ....|..+|||||||
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~---------------------------~~~~~~~~~~----~-~~~~~~~~HGT~vA~ 48 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNI---------------------------VGGANFTGDD----N-NDYQDGNGHGTHVAG 48 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccc---------------------------cCcccccCCC----C-CCCCCCCCCHHHHHH
Confidence 7999999999999999997531 1111222110 0 245678899999999
Q ss_pred hhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHH
Q 004113 219 TAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPI 298 (773)
Q Consensus 219 iiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~ 298 (773)
||++.... ..+.|+||+|+|+.+|++...+.....+++++++++++.+++|||||||.... ...+
T Consensus 49 ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~------~~~~ 113 (229)
T cd07477 49 IIAALDNG---------VGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD------SPAL 113 (229)
T ss_pred HHhcccCC---------CccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC------CHHH
Confidence 99997632 24689999999999999988766778899999999999999999999997642 3456
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCCCc--ccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeE
Q 004113 299 ALGAFHAVEHGITVVCSAGNDGPSSGSV--VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLI 376 (773)
Q Consensus 299 ~~~~~~a~~~Gi~vV~aAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v 376 (773)
..++..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 114 ~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~---------------------------------- 159 (229)
T cd07477 114 REAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN---------------------------------- 159 (229)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC----------------------------------
Confidence 6677888999999999999999776554 6677899999985432
Q ss_pred EcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEE
Q 004113 377 YAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTV 456 (773)
Q Consensus 377 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~ 456 (773)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCC
Q 004113 457 ISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEG 536 (773)
Q Consensus 457 i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~ 536 (773)
+.++.||++|+.. |++|||++|+++++.
T Consensus 160 -----------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~--------- 187 (229)
T cd07477 160 -----------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN--------- 187 (229)
T ss_pred -----------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC---------
Confidence 3566889999865 999999999999887
Q ss_pred CCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004113 537 KEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTT 581 (773)
Q Consensus 537 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~T 581 (773)
+.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 188 ---~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 188 ---NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred ---CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 789999999999999999999999999999999999999986
No 30
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-40 Score=347.50 Aligned_cols=246 Identities=21% Similarity=0.209 Sum_probs=176.0
Q ss_pred CCCCCC-CCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCC
Q 004113 129 PSLNSQ-DQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPR 207 (773)
Q Consensus 129 ~~~~~~-~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~ 207 (773)
++|+.. ..|+||+|+|||+|||.+||+|.++.... . ....+.
T Consensus 6 ~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~---------------------------~----------~~~~~~ 48 (277)
T cd04843 6 YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL---------------------------I----------SGLTDQ 48 (277)
T ss_pred HHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc---------------------------c----------CCCCCC
Confidence 588874 45999999999999999999998542100 0 001245
Q ss_pred CCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh----CCCcEEEecc
Q 004113 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA----DGVDVLSLSL 283 (773)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~----~g~dVIN~Sl 283 (773)
|..+|||||||||+|.. ++..+.||||+|+|+.+|++. .++++++|.+|++ .++.+|||||
T Consensus 49 d~~gHGT~VAGiIaa~~---------n~~G~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~~~~v~~in~s~ 113 (277)
T cd04843 49 ADSDHGTAVLGIIVAKD---------NGIGVTGIAHGAQAAVVSSTR------VSNTADAILDAADYLSPGDVILLEMQT 113 (277)
T ss_pred CCCCCcchhheeeeeec---------CCCceeeeccCCEEEEEEecC------CCCHHHHHHHHHhccCCCCEEEEEccc
Confidence 78899999999999863 122358999999999999985 2355666666665 4567899999
Q ss_pred CCCCCCCC---CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcc-------------cCCCcEEEEcccccCcceee
Q 004113 284 GGSAGIVR---PLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVV-------------NFAPWIFTVAASTIDRDFES 347 (773)
Q Consensus 284 G~~~~~~~---~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~-------------~~~p~vitVga~~~~~~~~~ 347 (773)
|....... ......+..++.++.++|+++|+||||++....... ...|++|+|||++.+.
T Consensus 114 g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~---- 189 (277)
T cd04843 114 GGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT---- 189 (277)
T ss_pred cCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC----
Confidence 98642101 112344556778888999999999999986421111 0124566776643210
Q ss_pred EEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhccc
Q 004113 348 DIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGV 427 (773)
Q Consensus 348 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~ 427 (773)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCC
Q 004113 428 KSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTR 507 (773)
Q Consensus 428 ~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d 507 (773)
...++.||++||..
T Consensus 190 ---------------------------------------------------------------~~~~~~fSn~G~~v--- 203 (277)
T cd04843 190 ---------------------------------------------------------------GHTRLAFSNYGSRV--- 203 (277)
T ss_pred ---------------------------------------------------------------CCccccccCCCCcc---
Confidence 11378999999976
Q ss_pred CCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHh----h-CCCCCHHHHHHHHHhcc
Q 004113 508 NILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKH----Q-NPTFSPSEIKSAVMTTA 582 (773)
Q Consensus 508 ~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~p~ls~~~Ik~~L~~TA 582 (773)
||.|||++|+++........ .....+.|..++|||||||||||++|||++ + +|+|+++|||++|+.|+
T Consensus 204 -----di~APG~~i~s~~~~~~~~~--~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~ 276 (277)
T cd04843 204 -----DVYGWGENVTTTGYGDLQDL--GGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATG 276 (277)
T ss_pred -----ceEcCCCCeEecCCCCcccc--cCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcC
Confidence 99999999999987532100 011113457899999999999999999975 3 49999999999999997
Q ss_pred c
Q 004113 583 T 583 (773)
Q Consensus 583 ~ 583 (773)
.
T Consensus 277 ~ 277 (277)
T cd04843 277 T 277 (277)
T ss_pred C
Confidence 3
No 31
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=1.3e-40 Score=354.05 Aligned_cols=277 Identities=30% Similarity=0.452 Sum_probs=209.8
Q ss_pred EEEEEccCCCCCCCCCC-CCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHh
Q 004113 141 IIGILDTGVWPESESFN-DKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAST 219 (773)
Q Consensus 141 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 219 (773)
+|||||+|||++||+|. ..- ...++.+.+.|.+.. .......|..+||||||||
T Consensus 1 ~V~viDtGid~~h~~~~~~~~----------------------~~~~~~~~~~~~~~~---~~~~~~~~~~~HGT~va~i 55 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF----------------------IWSKVPGGYNFVDGN---PNPSPSDDDNGHGTHVAGI 55 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE----------------------EEEEEEEEEETTTTB---STTTSSSTSSSHHHHHHHH
T ss_pred CEEEEcCCcCCCChhHccCCc----------------------ccccccceeeccCCC---CCcCccccCCCccchhhhh
Confidence 69999999999999997 320 112334455554432 1224567788999999999
Q ss_pred hccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHh-hCCCcEEEeccCCCCCCCCCCCCcHH
Q 004113 220 AAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAI-ADGVDVLSLSLGGSAGIVRPLTDDPI 298 (773)
Q Consensus 220 iag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~~~~~~~~~~~~ 298 (773)
|+|.. . . ......|+||+|+|+.+|++...+ ....+++++|++++ +.+++|||||||...........+.+
T Consensus 56 i~~~~-~-~-----~~~~~~Gva~~a~l~~~~i~~~~~-~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~ 127 (282)
T PF00082_consen 56 IAGNG-G-N-----NGPGINGVAPNAKLYSYKIFDNSG-GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDIL 127 (282)
T ss_dssp HHHTT-S-S-----SSSSETCSSTTSEEEEEECSSTTS-EEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHH
T ss_pred ccccc-c-c-----cccccccccccccccccccccccc-cccccccchhhhhhhccCCcccccccccccccccccccccc
Confidence 99986 2 1 223358999999999999987774 77888999999999 89999999999883210022233445
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCCC---cccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceee
Q 004113 299 ALGAFHAVEHGITVVCSAGNDGPSSGS---VVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPL 375 (773)
Q Consensus 299 ~~~~~~a~~~Gi~vV~aAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 375 (773)
..+++.+.++|+++|+||||++..... .+...+++|+||+++.+
T Consensus 128 ~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~--------------------------------- 174 (282)
T PF00082_consen 128 EEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN--------------------------------- 174 (282)
T ss_dssp HHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT---------------------------------
T ss_pred ccccccccccCcceeeccccccccccccccccccccccccccccccc---------------------------------
Confidence 667778889999999999999876543 33445788888875321
Q ss_pred EEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEE
Q 004113 376 IYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLT 455 (773)
Q Consensus 376 v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~ 455 (773)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCC
Q 004113 456 VISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPE 535 (773)
Q Consensus 456 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~ 535 (773)
+.++.||++|+... ++++||||+|||.+|.+.++...
T Consensus 175 ------------------------------------~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~------ 211 (282)
T PF00082_consen 175 ------------------------------------GQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSD------ 211 (282)
T ss_dssp ------------------------------------SSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTE------
T ss_pred ------------------------------------cccccccccccccc-ccccccccccccccccccccccc------
Confidence 25688999976543 68999999999999999887611
Q ss_pred CCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCccccccccc
Q 004113 536 GKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTAS 615 (773)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A 615 (773)
...|..++|||||||+|||++|||+|++|++++.+||.+|++||.++.... ....+..||||+||+.+|
T Consensus 212 ---~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~G~in~~~a 280 (282)
T PF00082_consen 212 ---RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSYGWGLINAEKA 280 (282)
T ss_dssp ---SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHHTTSBE-HHHH
T ss_pred ---cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCccCChhCHHHH
Confidence 034788999999999999999999999999999999999999999987221 123667889999999998
Q ss_pred CC
Q 004113 616 LQ 617 (773)
Q Consensus 616 ~~ 617 (773)
++
T Consensus 281 ~~ 282 (282)
T PF00082_consen 281 LN 282 (282)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.7e-40 Score=339.14 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=119.4
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeecccccccc-CCCCCCCCCCCCchh
Q 004113 137 ESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVV-ANGQSPRDMVGHGTH 215 (773)
Q Consensus 137 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~-~~~~~~~d~~gHGTh 215 (773)
+++|+|||||||||++||+|.+.- ..+.+|. .....+ .......|..|||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i------------~~~~~~~---------------~~~~~~~~~~~~~~d~~gHGT~ 54 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKI------------IGGKSFS---------------PYEGDGNKVSPYYVSADGHGTA 54 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccc------------ccCCCCC---------------CCCCCcccCCCCCCCCCCcHHH
Confidence 789999999999999999997531 1111221 110000 001223578899999
Q ss_pred hHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCC------CCCHHHHHHHHHHHhhCCCcEEEeccCCCCCC
Q 004113 216 VASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY------GCTGSNILAAFDDAIADGVDVLSLSLGGSAGI 289 (773)
Q Consensus 216 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g------~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~ 289 (773)
|||||+ |+||+|+|+.+|++...+ .+....+++||+||+++|+||||||||.....
T Consensus 55 vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~ 116 (247)
T cd07491 55 MARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPE 116 (247)
T ss_pred HHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccc
Confidence 999995 589999999999998763 35677899999999999999999999986521
Q ss_pred CCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-Cc--ccCCCcEEEEccccc
Q 004113 290 VRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG-SV--VNFAPWIFTVAASTI 341 (773)
Q Consensus 290 ~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~-~~--~~~~p~vitVga~~~ 341 (773)
........+..++.+|.++|++||+||||+|.... .+ +...|++|+|||++.
T Consensus 117 ~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 117 DNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred ccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 11223577888889999999999999999997654 33 344689999998643
No 33
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=5.5e-39 Score=343.62 Aligned_cols=154 Identities=29% Similarity=0.326 Sum_probs=107.1
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHH
Q 004113 139 DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAS 218 (773)
Q Consensus 139 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAG 218 (773)
.|+|||||||||++||+|.+.-.. ..+ .......+ ........ .......|..||||||||
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~----~~~-~~~~~~~~-------------~~~~~~~~-~~~~~~~d~~gHGT~vAg 61 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS----YSK-NLVPKGGY-------------DGKEAGET-GDINDIVDKLGHGTAVAG 61 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc----ccc-ccccCCCc-------------CCcccccc-CCCCcCCCCCCcHhHHHH
Confidence 389999999999999999853110 000 00000000 00000000 011345678999999999
Q ss_pred hhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCC-----CC
Q 004113 219 TAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVR-----PL 293 (773)
Q Consensus 219 iiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~-----~~ 293 (773)
+|+|+.. ..||||+|+|+.+|+++..+.....+++++|++|++++++|||||||....... ..
T Consensus 62 iia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~ 129 (294)
T cd07482 62 QIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDV 129 (294)
T ss_pred HHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchh
Confidence 9998642 249999999999999988755588899999999999999999999998542111 11
Q ss_pred CCcHHHHHHHHHHhCCcEEEEecCCCCCCC
Q 004113 294 TDDPIALGAFHAVEHGITVVCSAGNDGPSS 323 (773)
Q Consensus 294 ~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~ 323 (773)
..+.+..++..+.++|++||+||||+|...
T Consensus 130 ~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 130 EYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred hhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 124466677788899999999999998643
No 34
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-38 Score=336.80 Aligned_cols=366 Identities=25% Similarity=0.328 Sum_probs=274.8
Q ss_pred CCceEEEEeccCCCCCCCchhHHHHHHHHHhcccC---------ccEEEEecceeeEEEEEcC-----HHHHHHHhCCCC
Q 004113 29 KNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKK---------NSIIRSYKHGFSGFAARLS-----AEEAHALSKKPG 94 (773)
Q Consensus 29 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~y~~~~ng~s~~l~-----~~~i~~L~~~p~ 94 (773)
.+..|||+|+.-. . ...+..++++.+...+ ...--+|...|.-+.++-. ..+|++|..+|+
T Consensus 48 ve~EyIv~F~~y~-~----Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~ 122 (1033)
T KOG4266|consen 48 VESEYIVRFKQYK-P----AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPD 122 (1033)
T ss_pred ecceeEEEecccc-c----chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCC
Confidence 3567999999776 3 4566777877776332 2334456667776666543 335899999999
Q ss_pred eEEEecCceeccccc------------cCcccc-Cc-------------ccccc---------cCCCCCCCCCCCCCCCC
Q 004113 95 VVSIFPDPVLQLHTT------------RSWDFL-KI-------------QTDVL---------IDSVPSPSLNSQDQESD 139 (773)
Q Consensus 95 V~~V~~~~~~~~~~~------------~~~~~~-gl-------------~~~~~---------~~~~~~~~~~~~~~G~G 139 (773)
|+.|.|.+.+..... ..-.++ |. ....+ ....++-+|+.|+||++
T Consensus 123 vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~ 202 (1033)
T KOG4266|consen 123 VKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAK 202 (1033)
T ss_pred ceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCc
Confidence 999999876532100 000000 00 00000 01123679999999999
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHh
Q 004113 140 TIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAST 219 (773)
Q Consensus 140 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 219 (773)
|+|||.|||+.-+||.|+.- ....++. +...-.|..||||.|||+
T Consensus 203 VkvAiFDTGl~~~HPHFrnv----------------------------KERTNWT-------NE~tLdD~lgHGTFVAGv 247 (1033)
T KOG4266|consen 203 VKVAIFDTGLRADHPHFRNV----------------------------KERTNWT-------NEDTLDDNLGHGTFVAGV 247 (1033)
T ss_pred eEEEEeecccccCCccccch----------------------------hhhcCCc-------CccccccCcccceeEeee
Confidence 99999999999999999731 1111122 124566789999999999
Q ss_pred hccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHHH
Q 004113 220 AAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIA 299 (773)
Q Consensus 220 iag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~ 299 (773)
|||.. .-.|.||+++|++.|||-+.--..++++++|+.||+....||+|+|+|++. +++.++-
T Consensus 248 ia~~~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD-----fmD~PFV 310 (1033)
T KOG4266|consen 248 IAGRN------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD-----FMDLPFV 310 (1033)
T ss_pred eccch------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc-----cccchHH
Confidence 99874 237999999999999998875688899999999999999999999999854 4566666
Q ss_pred HHHHHHHhCCcEEEEecCCCCCCCCCcccCCC--cEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEE
Q 004113 300 LGAFHAVEHGITVVCSAGNDGPSSGSVVNFAP--WIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIY 377 (773)
Q Consensus 300 ~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p--~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~ 377 (773)
.-+.......|++|.|+||+||-.++..+++. .||.||..
T Consensus 311 eKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI-------------------------------------- 352 (1033)
T KOG4266|consen 311 EKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI-------------------------------------- 352 (1033)
T ss_pred HHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc--------------------------------------
Confidence 66677788999999999999999888877653 44555431
Q ss_pred cCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEe
Q 004113 378 AKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVI 457 (773)
Q Consensus 378 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i 457 (773)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCC----CCCCccCceEeCCccEEeeecCCCCCCC
Q 004113 458 SSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPL----TRNILKPDITAPGVNILAAWMGNDTGEA 533 (773)
Q Consensus 458 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~d~~iKPDI~APG~~I~sa~~~~~~~~~ 533 (773)
+-.+.+|.|||||-+.. .-||.||||++-|.+|......
T Consensus 353 -------------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~------ 395 (1033)
T KOG4266|consen 353 -------------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS------ 395 (1033)
T ss_pred -------------------------------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc------
Confidence 11358999999997543 1588999999999999877665
Q ss_pred CCCCCCCcceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCccc
Q 004113 534 PEGKEPPLFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGE 609 (773)
Q Consensus 534 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~ 609 (773)
.+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++.. .-++||+|+
T Consensus 396 ------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------NMfEQGaGk 457 (1033)
T KOG4266|consen 396 ------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------NMFEQGAGK 457 (1033)
T ss_pred ------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC------------chhhccCcc
Confidence 7788999999999999999999976 234468999999999999999875 558999999
Q ss_pred ccccccCCCceeecC
Q 004113 610 VSTTASLQPGLVYET 624 (773)
Q Consensus 610 id~~~A~~~~lv~~~ 624 (773)
+|+.++++--+-|..
T Consensus 458 ldLL~syqiL~SYkP 472 (1033)
T KOG4266|consen 458 LDLLESYQILKSYKP 472 (1033)
T ss_pred hhHHHHHHHHHhcCC
Confidence 999999884444443
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-38 Score=324.73 Aligned_cols=222 Identities=20% Similarity=0.280 Sum_probs=174.8
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHH
Q 004113 139 DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAS 218 (773)
Q Consensus 139 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAG 218 (773)
||+|||||||||++||+|.+.... +..+. ... +. .+.....|..||||||||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~------------~~~~~---------~~~-~~------~~~~~~~d~~gHGT~vAg 52 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD------------GEVTI---------DLE-II------VVSAEGGDKDGHGTACAG 52 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc------------ccccc---------ccc-cc------cCCCCCCCCCCcHHHHHH
Confidence 799999999999999999853210 00010 000 00 112445678999999999
Q ss_pred hhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHH
Q 004113 219 TAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPI 298 (773)
Q Consensus 219 iiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~ 298 (773)
||++. +|+++|+.+|+++..+.+...++++||+|+++++++|||||||.... .....+
T Consensus 53 iia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~----~~~~~~ 110 (222)
T cd07492 53 IIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGD----RDFPLL 110 (222)
T ss_pred HHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC----CcCHHH
Confidence 99853 69999999999998867888999999999999999999999998652 233566
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEc
Q 004113 299 ALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYA 378 (773)
Q Consensus 299 ~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~ 378 (773)
..++.++.++|+++|+||||++.... .+...+++|+|++...++
T Consensus 111 ~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~----------------------------------- 154 (222)
T cd07492 111 KELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD----------------------------------- 154 (222)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC-----------------------------------
Confidence 77788888999999999999986433 255668888888743211
Q ss_pred CCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEec
Q 004113 379 KSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVIS 458 (773)
Q Consensus 379 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~ 458 (773)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCC
Q 004113 459 SKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKE 538 (773)
Q Consensus 459 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~ 538 (773)
..+ .+++ ++|+.|||.+|+++.+.
T Consensus 155 ----------------------------------~~~---~~~~--------~~~~~apg~~i~~~~~~----------- 178 (222)
T cd07492 155 ----------------------------------PKS---FWYI--------YVEFSADGVDIIAPAPH----------- 178 (222)
T ss_pred ----------------------------------Ccc---cccC--------CceEEeCCCCeEeecCC-----------
Confidence 111 1122 34999999999999877
Q ss_pred CCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 539 PPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 539 ~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
+.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 179 -~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 179 -GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred -CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999999999999985
No 36
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=9.1e-39 Score=342.27 Aligned_cols=251 Identities=21% Similarity=0.235 Sum_probs=181.3
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 127 PSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 127 ~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
...+|+.+++|+||+|+|||||||++||+|.+.... ...++|.... ....+
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~----~~~~~ 78 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDND----PDPTP 78 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCC----CCCCC
Confidence 347999999999999999999999999999754210 0111111111 00122
Q ss_pred --CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccC
Q 004113 207 --RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLG 284 (773)
Q Consensus 207 --~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG 284 (773)
.|..+|||||||||+|+..+. ....||||+|+|+.+|++... .....+..++.++.+ .++|||||||
T Consensus 79 ~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~Vin~S~g 147 (297)
T cd04059 79 RYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLNPD-YIDIYSNSWG 147 (297)
T ss_pred ccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc--cccHHHHHHHhcccC-CceEEECCCC
Confidence 278899999999999986322 135899999999999998764 334455666666554 4699999999
Q ss_pred CCCCCC-CCCCCcHHHHHHHHHHh-----CCcEEEEecCCCCCCCCCc----ccCCCcEEEEcccccCcceeeEEEECCc
Q 004113 285 GSAGIV-RPLTDDPIALGAFHAVE-----HGITVVCSAGNDGPSSGSV----VNFAPWIFTVAASTIDRDFESDIVLGGN 354 (773)
Q Consensus 285 ~~~~~~-~~~~~~~~~~~~~~a~~-----~Gi~vV~aAGN~g~~~~~~----~~~~p~vitVga~~~~~~~~~~~~~g~~ 354 (773)
...... ..........++.++.+ +|+++|+||||+|...... ....|++|+|||++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~------------ 215 (297)
T cd04059 148 PDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN------------ 215 (297)
T ss_pred CCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC------------
Confidence 865310 01122334444455543 6999999999999733221 1245788888875331
Q ss_pred eEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceE
Q 004113 355 KVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVG 434 (773)
Q Consensus 355 ~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g 434 (773)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCce
Q 004113 435 VIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDI 514 (773)
Q Consensus 435 ~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI 514 (773)
+.++.||++|+.. ++
T Consensus 216 ---------------------------------------------------------g~~~~~s~~g~~~--------~~ 230 (297)
T cd04059 216 ---------------------------------------------------------GVRASYSEVGSSV--------LA 230 (297)
T ss_pred ---------------------------------------------------------CCCcCCCCCCCcE--------EE
Confidence 3677899999987 89
Q ss_pred EeCCcc-------EEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 515 TAPGVN-------ILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 515 ~APG~~-------I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
.|||.. |.++.... ....|..++|||||||+|||++|||+|+||+|++.+||.+|++||+
T Consensus 231 ~a~g~~~~~~~~~i~~~~~~~---------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 231 SAPSGGSGNPEASIVTTDLGG---------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred EecCCCCCCCCCceEeCCCCC---------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 999987 66555431 0156788999999999999999999999999999999999999985
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=5.8e-38 Score=330.72 Aligned_cols=246 Identities=26% Similarity=0.330 Sum_probs=188.1
Q ss_pred CCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchh
Q 004113 136 QESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTH 215 (773)
Q Consensus 136 ~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGTh 215 (773)
+|+||+|+|||+||+++||+|.+....... +. .... .......|..+||||
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~------------~~-------------~~~~----~~~~~~~~~~~HGT~ 51 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASY------------YV-------------AVND----AGYASNGDGDSHGTH 51 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccccc------------cc-------------cccc----ccCCCCCCCCChHHH
Confidence 699999999999999999999864211000 00 0000 001345678899999
Q ss_pred hHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCC-CCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCC---
Q 004113 216 VASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY-GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVR--- 291 (773)
Q Consensus 216 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g-~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~--- 291 (773)
|||+|+|+..+ ..+.|+||+|+|+.+|+++..+ .+....+.++++++++.+++|||||||.......
T Consensus 52 vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~ 122 (267)
T cd04848 52 VAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVST 122 (267)
T ss_pred HHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCccccccc
Confidence 99999998633 4468999999999999998774 4677788999999999999999999998753111
Q ss_pred ------CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcc---------cCCCcEEEEcccccCcceeeEEEECCceE
Q 004113 292 ------PLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVV---------NFAPWIFTVAASTIDRDFESDIVLGGNKV 356 (773)
Q Consensus 292 ------~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~---------~~~p~vitVga~~~~~~~~~~~~~g~~~~ 356 (773)
......+...+..+.++|+++|+||||++....... ...+++|+||+++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------------- 189 (267)
T cd04848 123 TYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------------- 189 (267)
T ss_pred chhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-------------
Confidence 124566677778888999999999999986543332 2347888888864421
Q ss_pred EeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEE
Q 004113 357 IKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVI 436 (773)
Q Consensus 357 ~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i 436 (773)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCcccc--ccCCCCCCCCCCCccCce
Q 004113 437 VIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAY--FSARGPSPLTRNILKPDI 514 (773)
Q Consensus 437 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~d~~iKPDI 514 (773)
.... ||++|+.. -.+++
T Consensus 190 --------------------------------------------------------~~~~~~~s~~~~~~-----~~~~~ 208 (267)
T cd04848 190 --------------------------------------------------------TIASYSYSNRCGVA-----ANWCL 208 (267)
T ss_pred --------------------------------------------------------Ccccccccccchhh-----hhhee
Confidence 2223 47777643 24579
Q ss_pred EeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 515 TAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 515 ~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
+|||.+|.++.+... ..|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus 209 ~apG~~i~~~~~~~~----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 209 AAPGENIYSTDPDGG----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ecCcCceeecccCCC----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999999999987311 67899999999999999999999999999999999999999985
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.9e-33 Score=287.15 Aligned_cols=198 Identities=21% Similarity=0.161 Sum_probs=142.2
Q ss_pred CCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHH--hhCCCcEEEecc
Q 004113 206 PRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDA--IADGVDVLSLSL 283 (773)
Q Consensus 206 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a--~~~g~dVIN~Sl 283 (773)
..|..+|||||||||||. .|++|+++|+..++.. .....+..+++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~----~~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI----KSNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC----CCCCccHHHHHHHHHhcCCceEEEeCC
Confidence 457899999999999987 3567999998765522 1233466777887 568999999999
Q ss_pred CCCCCCCC---CCCCcHHHHHHHHHHhC-CcEEEEecCCCCCCC-----CCcccCCCcEEEEcccccCcceeeEEEECCc
Q 004113 284 GGSAGIVR---PLTDDPIALGAFHAVEH-GITVVCSAGNDGPSS-----GSVVNFAPWIFTVAASTIDRDFESDIVLGGN 354 (773)
Q Consensus 284 G~~~~~~~---~~~~~~~~~~~~~a~~~-Gi~vV~aAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~g~~ 354 (773)
|....... ....+.+..+++.+.++ |+++|+||||+|... ...+..++++|+|||++....
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------- 163 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------- 163 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------
Confidence 98653100 01234566667776665 999999999999743 122345688999998644210
Q ss_pred eEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceE
Q 004113 355 KVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVG 434 (773)
Q Consensus 355 ~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g 434 (773)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCce
Q 004113 435 VIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDI 514 (773)
Q Consensus 435 ~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI 514 (773)
....+.||++|-....++..||||
T Consensus 164 --------------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di 187 (247)
T cd07488 164 --------------------------------------------------------RFFASDVSNAGSEINSYGRRKVLI 187 (247)
T ss_pred --------------------------------------------------------cceecccccccCCCCCCCCceeEE
Confidence 012345555432222257899999
Q ss_pred EeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCC------HHHHHHHHHhcc
Q 004113 515 TAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFS------PSEIKSAVMTTA 582 (773)
Q Consensus 515 ~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls------~~~Ik~~L~~TA 582 (773)
+|||++|++ +. +.|..++|||||||||||++|||++++|++. --++|.+|+.|+
T Consensus 188 ~APG~~i~s--~~------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 188 VAPGSNYNL--PD------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred EEeeeeEEC--CC------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 999999998 33 6788999999999999999999999988776 445677766653
No 39
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-32 Score=299.88 Aligned_cols=240 Identities=26% Similarity=0.347 Sum_probs=186.9
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC-CC-CCHHHHHHHHHHHhhCCCcEEEeccCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE-YG-CTGSNILAAFDDAIADGVDVLSLSLGGS 286 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~-g~-~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 286 (773)
...|||||||||+|+..... ...||||+|+|+.+++.+.. |+ -+...+.+|+..++++++||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 46799999999999975533 34799999999999997654 22 3445789999999999999999999987
Q ss_pred CCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccC---CCcEEEEcccccCcceeeEEEECCceEEeeeeec
Q 004113 287 AGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNF---APWIFTVAASTIDRDFESDIVLGGNKVIKGESIN 363 (773)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~---~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~ 363 (773)
.. .+..-..++..-+.+.++|+++|.||||+||...+++.+ .-.+|.|||.-......
T Consensus 381 a~--~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~----------------- 441 (1304)
T KOG1114|consen 381 AH--LPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ----------------- 441 (1304)
T ss_pred CC--CCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH-----------------
Confidence 65 455556666666666689999999999999998887764 35788888842211000
Q ss_pred cCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCc
Q 004113 364 FSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR 443 (773)
Q Consensus 364 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~ 443 (773)
..|.+
T Consensus 442 -------a~y~~-------------------------------------------------------------------- 446 (1304)
T KOG1114|consen 442 -------AEYSV-------------------------------------------------------------------- 446 (1304)
T ss_pred -------hhhhh--------------------------------------------------------------------
Confidence 00000
Q ss_pred cccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEe
Q 004113 444 AVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILA 523 (773)
Q Consensus 444 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~s 523 (773)
-.........||||||+. ||.+--.|+|||+.|.+
T Consensus 447 -------------------------------------------~e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAs 481 (1304)
T KOG1114|consen 447 -------------------------------------------REPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIAS 481 (1304)
T ss_pred -------------------------------------------hccCCCCccccccCCCCc--CCCcceEEecCCccccC
Confidence 001124678899999998 79999999999999866
Q ss_pred eecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCccccCCCCC
Q 004113 524 AWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAA 599 (773)
Q Consensus 524 a~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~ 599 (773)
--.-.. ..-..|.|||||+|+++|.+|||++ .+-.+||..||.+|++||.++++.
T Consensus 482 VP~~tl----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i----------- 540 (1304)
T KOG1114|consen 482 VPQYTL----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI----------- 540 (1304)
T ss_pred Cchhhh----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-----------
Confidence 422111 4557899999999999999999865 567899999999999999999875
Q ss_pred CCCCCCCcccccccccCC
Q 004113 600 ATPYDFGAGEVSTTASLQ 617 (773)
Q Consensus 600 ~~~~~~G~G~id~~~A~~ 617 (773)
.++.||.|+|++.+|.+
T Consensus 541 -d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 541 -DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred -chhccCcceeehhHHHH
Confidence 77999999999999987
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=1.4e-30 Score=269.11 Aligned_cols=235 Identities=34% Similarity=0.535 Sum_probs=177.5
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHh
Q 004113 140 TIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAST 219 (773)
Q Consensus 140 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 219 (773)
|+|+|||+|++++||+|.... .....+.++ .... .......+..+||||||++
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~---------~~~~~~~~~---------------~~~~---~~~~~~~~~~~HGt~va~~ 53 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLF---------GGGDGGNDD---------------DDNE---NGPTDPDDGNGHGTHVAGI 53 (241)
T ss_pred CEEEEEeCCCCCCCcchhccc---------cCccccccc---------------ccCc---CCCCCCCCCCCcHHHHHHH
Confidence 689999999999999872110 000000000 0000 0002345788999999999
Q ss_pred hccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHh-hCCCcEEEeccCCCCCCCCCCCCcHH
Q 004113 220 AAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAI-ADGVDVLSLSLGGSAGIVRPLTDDPI 298 (773)
Q Consensus 220 iag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~~~~~~~~~~~~ 298 (773)
|++...+ ....|+||+++|+.+|+....+......+++++++++ ..+++|||||||.... . ....+
T Consensus 54 i~~~~~~---------~~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~---~-~~~~~ 120 (241)
T cd00306 54 IAASANN---------GGGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGS---P-PSSAL 120 (241)
T ss_pred HhcCCCC---------CCCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCC---C-CCHHH
Confidence 9998633 2238999999999999998775567888999999999 8999999999998762 2 44566
Q ss_pred HHHHHHHHhC-CcEEEEecCCCCCCCC---CcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCcee
Q 004113 299 ALGAFHAVEH-GITVVCSAGNDGPSSG---SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYP 374 (773)
Q Consensus 299 ~~~~~~a~~~-Gi~vV~aAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 374 (773)
...+.++.++ |+++|+||||.+.... ..+...+++|+||+++.+.
T Consensus 121 ~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~------------------------------- 169 (241)
T cd00306 121 SEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG------------------------------- 169 (241)
T ss_pred HHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-------------------------------
Confidence 7777888877 9999999999997765 4566789999999865431
Q ss_pred eEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccE
Q 004113 375 LIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPL 454 (773)
Q Consensus 375 ~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~ 454 (773)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccc-cccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCC
Q 004113 455 TVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIA-YFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEA 533 (773)
Q Consensus 455 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~ 533 (773)
... .++++| .|||+.|||.++......
T Consensus 170 --------------------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~------ 197 (241)
T cd00306 170 --------------------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTT------ 197 (241)
T ss_pred --------------------------------------CccCCcCCCC--------CCceEEeCcCCccCcccC------
Confidence 111 334334 467999999999875111
Q ss_pred CCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004113 534 PEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTT 581 (773)
Q Consensus 534 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~T 581 (773)
....+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 198 ----~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 198 ----GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred ----CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 11789999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-23 Score=240.88 Aligned_cols=272 Identities=28% Similarity=0.397 Sum_probs=199.9
Q ss_pred CCCCC--CCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 129 PSLNS--QDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 129 ~~~~~--~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
..|.. +.+|+|++|+|||+||+..||+|.+... ..++|.... +....
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~---------------------------~~~~~~~~~----~~~~~ 179 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV---------------------------AGGDFVDGD----PEPPF 179 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhcccc---------------------------cccccccCC----CCCCC
Confidence 57777 8999999999999999999999986421 002222221 00124
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC-CCCCHHHHHHHHHHHhhCC--CcEEEecc
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE-YGCTGSNILAAFDDAIADG--VDVLSLSL 283 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~-g~~~~~~i~~ai~~a~~~g--~dVIN~Sl 283 (773)
.|..+|||||+|++++.... +.....|++|+++++.+|++... +.....+++.+++++++.+ +++||||+
T Consensus 180 ~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~ 252 (508)
T COG1404 180 LDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSL 252 (508)
T ss_pred CCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 68999999999999984211 22336899999999999999976 6788888999999999999 99999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHhCC-cEEEEecCCCCCCCCC----cccCC--CcEEEEcccccCcceeeEEEECCceE
Q 004113 284 GGSAGIVRPLTDDPIALGAFHAVEHG-ITVVCSAGNDGPSSGS----VVNFA--PWIFTVAASTIDRDFESDIVLGGNKV 356 (773)
Q Consensus 284 G~~~~~~~~~~~~~~~~~~~~a~~~G-i~vV~aAGN~g~~~~~----~~~~~--p~vitVga~~~~~~~~~~~~~g~~~~ 356 (773)
|.. . .......+..++..+...| +++|+++||.+..... .+... +.+++|++...
T Consensus 253 g~~-~--~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~--------------- 314 (508)
T COG1404 253 GGS-L--SDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL--------------- 314 (508)
T ss_pred CCC-c--cccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC---------------
Confidence 986 1 3344566667778887777 9999999999866421 11111 24444444211
Q ss_pred EeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEE
Q 004113 357 IKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVI 436 (773)
Q Consensus 357 ~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i 436 (773)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEe
Q 004113 437 VIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITA 516 (773)
Q Consensus 437 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~A 516 (773)
.+.++.||++|+.. ..+++|
T Consensus 315 ------------------------------------------------------~~~~~~~s~~g~~~------~~~~~a 334 (508)
T COG1404 315 ------------------------------------------------------SDTVASFSNDGSPT------GVDIAA 334 (508)
T ss_pred ------------------------------------------------------CCccccccccCCCC------CcceeC
Confidence 24778899999752 239999
Q ss_pred CCccEEe-----eecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCC-CCCHHHHHHHHHhcccccCCCCC
Q 004113 517 PGVNILA-----AWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNP-TFSPSEIKSAVMTTATQTNNLRA 590 (773)
Q Consensus 517 PG~~I~s-----a~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-~ls~~~Ik~~L~~TA~~~~~~g~ 590 (773)
||.+|.+ .++... ..|..++||||++|||+|++||+++.+| .+++.+++..+..++......
T Consensus 335 pg~~i~~~~~~~~~~~~~----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 402 (508)
T COG1404 335 PGVNILSLSAVNTLPGDG----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLS-- 402 (508)
T ss_pred CCccccccccceeeeCCc----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccccCC--
Confidence 9999988 444410 2499999999999999999999999999 899999999988888741111
Q ss_pred ccccCCCCCCCCCCCCcccccccccCC
Q 004113 591 PITTNSGAAATPYDFGAGEVSTTASLQ 617 (773)
Q Consensus 591 ~~~~~~~~~~~~~~~G~G~id~~~A~~ 617 (773)
.....++.|..+...+..
T Consensus 403 ---------~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 403 ---------GVDNLVGGGLANLDAAAT 420 (508)
T ss_pred ---------ccccccccCccccccccc
Confidence 144567777666665554
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.7e-23 Score=210.65 Aligned_cols=276 Identities=16% Similarity=0.153 Sum_probs=156.5
Q ss_pred Cchhh-HHHHHHHHHHHhhhhhcccccCCCCceEEEEeccCCCCCCCchhHHHHHHHHHhcccC----ccEEEEecceee
Q 004113 1 MKGLV-VLFPVLFLFLGSFFGDAAAAQGSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKK----NSIIRSYKHGFS 75 (773)
Q Consensus 1 Mk~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~y~~~~n 75 (773)
|++.. .-+++.++++++....+..+-..-...|+|+|+.+. . ......+....+-.. ......|+-.-+
T Consensus 1 m~~~t~s~l~a~fl~lf~~~~gag~~~~vftnhflv~l~~g~-g-----~~~ah~va~~hgf~nrg~~~a~d~eyhf~h~ 74 (629)
T KOG3526|consen 1 MMKNTHSDLIAVFLSLFCVMIGAGEAVDVFTNHFLVHLKEGG-G-----LEDAHRVAKRHGFINRGQVAASDNEYHFVHP 74 (629)
T ss_pred CCcchHHHHHHHHHHHHHHHhccccCcceeeeeEEEEEeccC-C-----hHHHHHHHHHhCccccccccccCceeeeecc
Confidence 44443 345666666666665555555566789999999886 3 111222222222111 111123332223
Q ss_pred EEEEE---cCHHHHHHHhCCCCeEEEecCceec-------cc-----------cccCccccCccccc---ccCCCCCCCC
Q 004113 76 GFAAR---LSAEEAHALSKKPGVVSIFPDPVLQ-------LH-----------TTRSWDFLKIQTDV---LIDSVPSPSL 131 (773)
Q Consensus 76 g~s~~---l~~~~i~~L~~~p~V~~V~~~~~~~-------~~-----------~~~~~~~~gl~~~~---~~~~~~~~~~ 131 (773)
++.-. -+...-++|.++|.|+-+....-+. +. -+..|-+....+.. ........+|
T Consensus 75 ~l~har~rrsl~h~~~l~~dp~v~~a~qq~gf~r~krgyrp~~~fd~~~~dplf~~qwylkntgqaggk~rldlnv~~aw 154 (629)
T KOG3526|consen 75 ALVHARTRRSLGHHAKLHNDPEVKMALQQEGFDRKKRGYRPINEFDINMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAW 154 (629)
T ss_pred ccchhhhhcccchhhhhccChhHhhhhhccccchhhccCCchhhhccccCCcccceeeeeecccccCCcccccccHHHHH
Confidence 33211 1233457788888887765433221 10 00111111000000 0111224789
Q ss_pred CCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC--C
Q 004113 132 NSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD--M 209 (773)
Q Consensus 132 ~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d--~ 209 (773)
.+|++|++|++||+|.||||-|||+..+ | .--..++|..++.+ +++...| .
T Consensus 155 a~g~tgknvttaimddgvdymhpdlk~n------------------y-------naeasydfssndpf--pyprytddwf 207 (629)
T KOG3526|consen 155 ALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------Y-------NAEASYDFSSNDPF--PYPRYTDDWF 207 (629)
T ss_pred hhcccCCCceEEeecCCchhcCcchhcc------------------c-------CceeecccccCCCC--CCCcccchhh
Confidence 9999999999999999999999999732 1 12234455544332 1111122 5
Q ss_pred CCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh-CCCcEEEeccCCCCC
Q 004113 210 VGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA-DGVDVLSLSLGGSAG 288 (773)
Q Consensus 210 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~ 288 (773)
+.|||.|||-+++...++. +| .|||++.++..+|+++.. +..|+++|-..--+ ...+|.+-|||....
T Consensus 208 nshgtrcagev~aardngi--cg------vgvaydskvagirmldqp---ymtdlieansmghep~kihiysaswgptdd 276 (629)
T KOG3526|consen 208 NSHGTRCAGEVVAARDNGI--CG------VGVAYDSKVAGIRMLDQP---YMTDLIEANSMGHEPSKIHIYSASWGPTDD 276 (629)
T ss_pred hccCccccceeeeeccCCc--ee------eeeeeccccceeeecCCc---hhhhhhhhcccCCCCceEEEEecccCcCCC
Confidence 7899999999888765533 33 799999999999999865 66677666433222 357899999998643
Q ss_pred CCCCCCC---cHHHHHHHHHH-----hCCcEEEEecCCCCCC
Q 004113 289 IVRPLTD---DPIALGAFHAV-----EHGITVVCSAGNDGPS 322 (773)
Q Consensus 289 ~~~~~~~---~~~~~~~~~a~-----~~Gi~vV~aAGN~g~~ 322 (773)
....+ ++..+++.+-+ ..|-++|.|.|..|..
T Consensus 277 --gktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 277 --GKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred --CcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 12222 22223333333 3467999999987743
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.69 E-value=1.1e-16 Score=175.13 Aligned_cols=105 Identities=25% Similarity=0.312 Sum_probs=81.1
Q ss_pred cceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhC---CCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcE
Q 004113 235 AGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIAD---GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGIT 311 (773)
Q Consensus 235 ~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~---g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~ 311 (773)
-..+.||||+|+|+.|++++.. ...++.++.+++.+ +++|||+|||.........+.+.+..++.+|..+||.
T Consensus 80 v~~~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 80 VEYAGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHHHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeE
Confidence 3446899999999999997642 45677888888876 9999999999875211112335677788888999999
Q ss_pred EEEecCCCCCCCC-----------CcccCCCcEEEEcccccCc
Q 004113 312 VVCSAGNDGPSSG-----------SVVNFAPWIFTVAASTIDR 343 (773)
Q Consensus 312 vV~aAGN~g~~~~-----------~~~~~~p~vitVga~~~~~ 343 (773)
||+||||+|.... ..+...|+|++||+++...
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999999997653 2345679999999987654
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.15 E-value=2.1e-10 Score=108.55 Aligned_cols=114 Identities=26% Similarity=0.379 Sum_probs=90.9
Q ss_pred CCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccc--
Q 004113 370 SPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVAS-- 447 (773)
Q Consensus 370 ~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~-- 447 (773)
....+++|.+. |....+...+++|||+||+|+. |.+.+|..+++.+||.|+|++++.......
T Consensus 25 ~~~~~lv~~g~-------------g~~~d~~~~dv~GkIvL~~rg~--c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~ 89 (143)
T cd02133 25 GKTYELVDAGL-------------GTPEDFEGKDVKGKIALIQRGE--ITFVEKIANAKAAGAVGVIIYNNVDGLIPGTL 89 (143)
T ss_pred CcEEEEEEccC-------------CchhccCCCCccceEEEEECCC--CCHHHHHHHHHHCCCeEEEEeecCCCcccccC
Confidence 56778888765 5555666778999999999975 679999999999999999999988632211
Q ss_pred -cCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCC
Q 004113 448 -SYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPS 503 (773)
Q Consensus 448 -~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~ 503 (773)
....+|++.|+..+|..|++|+++ .+++.+..+.. ..+.+.++.||||||.
T Consensus 90 ~~~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 90 GEAVFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred CCCCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 124689999999999999999988 56666665554 4567889999999996
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.09 E-value=7.2e-10 Score=102.74 Aligned_cols=122 Identities=39% Similarity=0.627 Sum_probs=95.6
Q ss_pred EEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccc
Q 004113 349 IVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVK 428 (773)
Q Consensus 349 ~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~ 428 (773)
+.+||++++.|++++.... ..+++++.... ........|.+..++..+++|||++|+++.+ ..+.+|..+++
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~----~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~-~~~~~k~~~~~ 73 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSAN----SGDVDASLCLPGSLDPSKVKGKIVLCDRGGN-TSRVAKGDAVK 73 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCc----CCCCccccCCCCCCChhhccccEEEEeCCCC-ccHHHHHHHHH
Confidence 6789999999999996443 46777763321 1223447899988888999999999999753 17889999999
Q ss_pred cCCceEEEEEeCCCcccc--ccCccccEEEecHHHHHHHHHHHhcCCCceEE
Q 004113 429 SLGGVGVIVIDDQSRAVA--SSYGTFPLTVISSKEAAEILAYINSKRNPVAT 478 (773)
Q Consensus 429 ~~Ga~g~i~~~~~~~~~~--~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~ 478 (773)
.+||.|+|++++...... .....+|++.|+..++..|++|++++..++++
T Consensus 74 ~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 74 AAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999999999998764322 22467999999999999999999998776554
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.79 E-value=1.2e-08 Score=86.72 Aligned_cols=75 Identities=41% Similarity=0.599 Sum_probs=56.7
Q ss_pred eEEEEeccCCCCCCCchhHHHHHHHHHhc-------ccCccEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEecCcee
Q 004113 32 VYIVYMGAAASGKGSLRDDHAQLLASMLK-------WKKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVL 104 (773)
Q Consensus 32 ~yIV~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~~V~~~~~~ 104 (773)
+|||.|++.. ........+.+++.+++. ....++.+.|+..||||+++++++++++|+++|+|++|+||+.+
T Consensus 1 ~YIV~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v 79 (82)
T PF05922_consen 1 RYIVVFKDDA-SAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVV 79 (82)
T ss_dssp EEEEEE-TTS-THHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEE
T ss_pred CEEEEECCCC-CcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceE
Confidence 6999999987 533335666666664332 23589999999999999999999999999999999999999988
Q ss_pred ccc
Q 004113 105 QLH 107 (773)
Q Consensus 105 ~~~ 107 (773)
+++
T Consensus 80 ~l~ 82 (82)
T PF05922_consen 80 SLH 82 (82)
T ss_dssp EE-
T ss_pred ecC
Confidence 764
No 47
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.59 E-value=5.9e-07 Score=81.28 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=61.8
Q ss_pred EEEeccCCCccEEEEEEEEeccCCCCeEEEEEEeCC--------CC----------c-EEEEecCeEEEccCCcEEEEEE
Q 004113 673 IAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAP--------QG----------L-NVKVIPEELQFTKSGQKLSYQV 733 (773)
Q Consensus 673 ~~~~~~~~~~~~~~~~tvtn~~~~~~~ty~~~~~~~--------~g----------~-~v~v~p~~~~~~~~~~~~~~~v 733 (773)
|++.++.. ..+++++++|.| +.+.+|+++.... .| . .++..|..+++ ++|++++|+|
T Consensus 1 i~L~d~~~--~~~~~itl~N~~-~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~v 76 (112)
T PF06280_consen 1 ISLKDTGN--KFSFTITLHNYG-DKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTV 76 (112)
T ss_dssp EEEEEE-S--EEEEEEEEEE-S-SS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEE
T ss_pred CCccccCC--ceEEEEEEEECC-CCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEE
Confidence 34566644 689999999999 9999999986611 11 1 67778889998 6899999999
Q ss_pred EEEecc---CCCCCcEEEEEEEECC-c-eeEEEEEE
Q 004113 734 TFTSAL---SPLKEDVFGSITWSNG-K-YKVRSLFV 764 (773)
Q Consensus 734 t~~~~~---~~~~~~~~G~l~~~~~-~-~~v~~P~~ 764 (773)
+++.+. ...+.+++|+|.+++. . +.+++||+
T Consensus 77 ti~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 77 TITPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp EEE--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EEEehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 999953 3457899999999974 4 58999996
No 48
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.9e-07 Score=99.56 Aligned_cols=158 Identities=16% Similarity=0.104 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
..|..+++|+++.|+|.|+|++..||+.... ....+.+++.....-...-.+...
T Consensus 24 ~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~~~p~~~~~~~~ 78 (431)
T KOG3525|consen 24 NAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHDNDPEPRCDGTN 78 (431)
T ss_pred eccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCCCCcccccCCCC
Confidence 6999999999999999999999999998742 111222222222110001112223
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh-CCCcEEEeccCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA-DGVDVLSLSLGGSA 287 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~ 287 (773)
...|||-||+-.+....+ ..-..|+++++++..++++... .++...+...... .-+++-..|||...
T Consensus 79 ~~~~g~~Ca~~~a~~~~~--------~~C~vg~~~~~~~~g~~~l~~~----v~~~~~~~~~~~~~~~~di~scsw~pdd 146 (431)
T KOG3525|consen 79 ENKHGTRCAGCVAARANN--------LTCGVGVAYNATIGGIRMLAGC----VSDAVEAPSLGFGPCHIDIYSCSWGPDD 146 (431)
T ss_pred ccccCCCCCcccccccCC--------CcCCCCcccCccccceeeeeee----cccceecccccCCCCCceeecCcCCccc
Confidence 588999999999987522 2335899999999999998643 1233333322222 34789999999864
Q ss_pred CCCCCCCC-cHHHHHHHHH-----HhCCcEEEEecCCCCCCC
Q 004113 288 GIVRPLTD-DPIALGAFHA-----VEHGITVVCSAGNDGPSS 323 (773)
Q Consensus 288 ~~~~~~~~-~~~~~~~~~a-----~~~Gi~vV~aAGN~g~~~ 323 (773)
........ .....+...+ ..+|-+.+++.||.|...
T Consensus 147 d~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 147 DGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred CCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 32111111 1122222322 357889999999987543
No 49
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.40 E-value=8.8e-07 Score=81.42 Aligned_cols=85 Identities=25% Similarity=0.339 Sum_probs=69.7
Q ss_pred ccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccc-----cc--cCccccEEEecHHHHH
Q 004113 391 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV-----AS--SYGTFPLTVISSKEAA 463 (773)
Q Consensus 391 ~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~-----~~--~~~~~p~~~i~~~~~~ 463 (773)
...|.+..+...+++|||+||+|+. |.+.+|..+++++||.++|++|+..... .. ....+|.++|+..+|+
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~--c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~ 106 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGG--CPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGA 106 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCC--CCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHH
Confidence 3679988877789999999999975 5699999999999999999999876321 11 3346999999999999
Q ss_pred HHHHHHhcCCCceE
Q 004113 464 EILAYINSKRNPVA 477 (773)
Q Consensus 464 ~l~~~~~~~~~~~~ 477 (773)
.|++++..+.+.++
T Consensus 107 ~l~~~l~~g~~v~~ 120 (122)
T cd04816 107 ALRRRLGAGETLEL 120 (122)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999988765443
No 50
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.35 E-value=4.7e-07 Score=80.21 Aligned_cols=76 Identities=30% Similarity=0.452 Sum_probs=62.1
Q ss_pred cCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCC------ccccccCccccEEEecHHHHHHH
Q 004113 392 RNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQS------RAVASSYGTFPLTVISSKEAAEI 465 (773)
Q Consensus 392 ~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~------~~~~~~~~~~p~~~i~~~~~~~l 465 (773)
..|........+++|||+||+|+. |++.+|..+++++||.|+|+++... .........||+++|+.++|+.|
T Consensus 20 ~~~~~~~~~~~~~~gkIvlv~rg~--~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 20 GDCCPSDYNGSDVKGKIVLVERGS--CSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp CHHHHHHTSTSTCTTSEEEEESTS--SCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred ccccccccCCccccceEEEEecCC--CCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 457777888899999999999965 5799999999999999999999211 23345567999999999999999
Q ss_pred HHHH
Q 004113 466 LAYI 469 (773)
Q Consensus 466 ~~~~ 469 (773)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9985
No 51
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=6e-06 Score=98.45 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=58.9
Q ss_pred eeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCC-cEEEeccCCCCCCCCCC--CCcHHHHHHHHHHhCCcEEEE
Q 004113 238 AIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGV-DVLSLSLGGSAGIVRPL--TDDPIALGAFHAVEHGITVVC 314 (773)
Q Consensus 238 ~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~-dVIN~SlG~~~~~~~~~--~~~~~~~~~~~a~~~Gi~vV~ 314 (773)
..-+||+|+|..+-.- ......+..|+.+....-+ -+|-.||+....-...+ ..+.+......|..+||.+++
T Consensus 288 s~A~AP~A~I~lvvap----~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 288 SHAMAPKANIDLVVAP----NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhccCccCceEEEEcC----CCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 4568999999998772 2233333333333322211 34445666532100122 334555566778899999999
Q ss_pred ecCCCCCCCCC--------cccCCCcEEEEcc
Q 004113 315 SAGNDGPSSGS--------VVNFAPWIFTVAA 338 (773)
Q Consensus 315 aAGN~g~~~~~--------~~~~~p~vitVga 338 (773)
|+|.+|....+ .+..+|++.+||-
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999865543 2346799999997
No 52
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.32 E-value=2.4e-06 Score=79.85 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=70.3
Q ss_pred ccCCCCCCc--ccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCc--cc----cccCccccEEEecHHHH
Q 004113 391 ARNCDLDSL--AGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR--AV----ASSYGTFPLTVISSKEA 462 (773)
Q Consensus 391 ~~~c~~~~~--~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~--~~----~~~~~~~p~~~i~~~~~ 462 (773)
...|.+... .+.++.|+|+|++||. |+|.+|..+++.+||.++|++|+... .. ......+|.++|+..+|
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV~RG~--C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G 121 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALIQRGN--CTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKG 121 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEEECCC--CCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHH
Confidence 467988766 5678999999999965 68999999999999999999999862 11 12234789999999999
Q ss_pred HHHHHHHhcCCCceEE
Q 004113 463 AEILAYINSKRNPVAT 478 (773)
Q Consensus 463 ~~l~~~~~~~~~~~~~ 478 (773)
+.|++++.++.+.+++
T Consensus 122 ~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 122 MEILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHHcCCcEEEe
Confidence 9999999888765554
No 53
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.30 E-value=2e-06 Score=77.70 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=66.3
Q ss_pred cCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccc----c--ccCccccEEEecHHHHHHH
Q 004113 392 RNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV----A--SSYGTFPLTVISSKEAAEI 465 (773)
Q Consensus 392 ~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~----~--~~~~~~p~~~i~~~~~~~l 465 (773)
..|....+.+.+++|+|+|++||. |+|.+|..+++.+||.++|++|+..... . .....||+++|+..+|+.|
T Consensus 31 ~gC~~~~~~~~~l~gkIaLV~RG~--CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 31 VLCSASDVPPGGLKGKAVVVMRGN--CTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred CCCCccccCccccCCeEEEEECCC--cCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 569998888889999999999975 6899999999999999999999986311 1 1345789999999999999
Q ss_pred HHHHhc
Q 004113 466 LAYINS 471 (773)
Q Consensus 466 ~~~~~~ 471 (773)
+..+.+
T Consensus 109 ~~~l~~ 114 (120)
T cd02129 109 QQTFGD 114 (120)
T ss_pred HHHhcc
Confidence 988764
No 54
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.29 E-value=3.4e-06 Score=76.59 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=68.8
Q ss_pred cCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc---c----c---ccCccccEEEecHHH
Q 004113 392 RNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA---V----A---SSYGTFPLTVISSKE 461 (773)
Q Consensus 392 ~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~---~----~---~~~~~~p~~~i~~~~ 461 (773)
..|.+.. ...+++|+|+|++||. |.|.+|..+++++||.++|++|+.... . . .....||+++|+..+
T Consensus 22 ~gC~~~~-~~~~~~g~I~Lv~RG~--C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~d 98 (118)
T cd02127 22 EACEELR-NIHDINGNIALIERGG--CSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKN 98 (118)
T ss_pred ccCCCCC-CccccCCeEEEEECCC--CCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHH
Confidence 5688643 3567999999999965 689999999999999999999986531 1 1 123479999999999
Q ss_pred HHHHHHHHhcCCCceEEE
Q 004113 462 AAEILAYINSKRNPVATI 479 (773)
Q Consensus 462 ~~~l~~~~~~~~~~~~~i 479 (773)
|+.|++.+..+..+++.+
T Consensus 99 G~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 99 GYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHcCCceEEee
Confidence 999999999887776544
No 55
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.28 E-value=2.8e-06 Score=77.69 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=67.9
Q ss_pred ccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccc--c----ccCccccEEEecHHHHHH
Q 004113 391 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV--A----SSYGTFPLTVISSKEAAE 464 (773)
Q Consensus 391 ~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~--~----~~~~~~p~~~i~~~~~~~ 464 (773)
...|.+.... .+++|||+||+|+. |.+.+|..++.++||.|+|++++..... . .....+|+++|+.+++..
T Consensus 27 ~~~C~~~~~~-~~v~GkIvL~~rg~--c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 27 TDGCTAFTNA-AAFAGKIALIDRGT--CNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred ccccCCCCcC-CCCCCEEEEEECCC--CCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 4569887764 46999999999965 6789999999999999999999877421 1 123479999999999999
Q ss_pred HHHHHhcCCCceE
Q 004113 465 ILAYINSKRNPVA 477 (773)
Q Consensus 465 l~~~~~~~~~~~~ 477 (773)
|+.|++.+...++
T Consensus 104 l~~~l~~g~~v~v 116 (118)
T cd04818 104 LKAALAAGGTVTV 116 (118)
T ss_pred HHHHHhcCCcEEE
Confidence 9999998765444
No 56
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.25 E-value=3.1e-06 Score=78.17 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=68.1
Q ss_pred ccCCCCCC--cccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc-c---c----ccCccccEEEecHH
Q 004113 391 ARNCDLDS--LAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA-V---A----SSYGTFPLTVISSK 460 (773)
Q Consensus 391 ~~~c~~~~--~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-~---~----~~~~~~p~~~i~~~ 460 (773)
...|.... +...+++|||+||+|+. |.+.+|..+++.+||.|+|++++.... . . .....+|++.|+.+
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~--~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~ 107 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGG--CSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYA 107 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCC--cCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHH
Confidence 34587776 67788999999999965 679999999999999999999987631 1 1 13457999999999
Q ss_pred HHHHHHHHHhcCCCce
Q 004113 461 EAAEILAYINSKRNPV 476 (773)
Q Consensus 461 ~~~~l~~~~~~~~~~~ 476 (773)
++..|+.|+.++.+.+
T Consensus 108 ~g~~l~~~~~~~~~v~ 123 (126)
T cd00538 108 DGEALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHHHhcCCceE
Confidence 9999999998765433
No 57
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.21 E-value=3.5e-06 Score=78.30 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=59.9
Q ss_pred CcccccccceEEEEecCCCC---CchhhhhcccccCCceEEEEEeCC--Cccc---ccc---CccccEEEecHHHHHHHH
Q 004113 398 SLAGALVKGKIVLCDNDDDM---GSVVDKKDGVKSLGGVGVIVIDDQ--SRAV---ASS---YGTFPLTVISSKEAAEIL 466 (773)
Q Consensus 398 ~~~~~~~~gki~l~~~~~~~---~~~~~k~~~~~~~Ga~g~i~~~~~--~~~~---~~~---~~~~p~~~i~~~~~~~l~ 466 (773)
++.+.+++|||+|++|+.+. ..|.+|..+++++||.|+|+||+. .... ..+ ..+||++.|++.+|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 34466899999999997644 229999999999999999999998 3211 111 458999999999999999
Q ss_pred HHHhcC
Q 004113 467 AYINSK 472 (773)
Q Consensus 467 ~~~~~~ 472 (773)
..+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 987543
No 58
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.17 E-value=6.1e-06 Score=76.10 Aligned_cols=83 Identities=31% Similarity=0.448 Sum_probs=66.1
Q ss_pred cCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc------cc--------ccCccccEEEe
Q 004113 392 RNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA------VA--------SSYGTFPLTVI 457 (773)
Q Consensus 392 ~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~------~~--------~~~~~~p~~~i 457 (773)
..|.+... +.+++|||+|++||. |+|.+|..+++++||.++|++|+.... .. .....||+++|
T Consensus 28 ~gC~~~~~-~~~~~gkIaLv~RG~--C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I 104 (126)
T cd02126 28 RACSEITN-AEEVKGKIAIMERGD--CMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFL 104 (126)
T ss_pred hcccCCCC-ccccCceEEEEECCC--CcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEE
Confidence 56886543 667899999999965 679999999999999999999876531 10 12357999999
Q ss_pred cHHHHHHHHHHHhcCCCceE
Q 004113 458 SSKEAAEILAYINSKRNPVA 477 (773)
Q Consensus 458 ~~~~~~~l~~~~~~~~~~~~ 477 (773)
+..+|+.|++.+......++
T Consensus 105 ~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 105 FSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred EHHHHHHHHHHHHhCCceEE
Confidence 99999999999987655443
No 59
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.16 E-value=6.8e-06 Score=75.55 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=66.9
Q ss_pred cCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCC-ccc---c--ccCccccEEEecHHHHHHH
Q 004113 392 RNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQS-RAV---A--SSYGTFPLTVISSKEAAEI 465 (773)
Q Consensus 392 ~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~-~~~---~--~~~~~~p~~~i~~~~~~~l 465 (773)
..|.+..+ +.+++|||+|++|+. |.+.+|..+++++||.++|++|+.. ... . .....+|.+.|+.++|+.|
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~--c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L 108 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGE--CPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKAL 108 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCC--CCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHH
Confidence 35876554 457999999999965 5689999999999999999999883 211 1 1245799999999999999
Q ss_pred HHHHhcCCCceEE
Q 004113 466 LAYINSKRNPVAT 478 (773)
Q Consensus 466 ~~~~~~~~~~~~~ 478 (773)
++.+.++...+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd02130 109 VAALANGGEVSAN 121 (122)
T ss_pred HHHHhcCCcEEEe
Confidence 9999988765543
No 60
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.07 E-value=1.2e-05 Score=75.54 Aligned_cols=81 Identities=15% Similarity=0.288 Sum_probs=65.5
Q ss_pred cCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccc--------ccCccccEEEecHHHHH
Q 004113 392 RNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA--------SSYGTFPLTVISSKEAA 463 (773)
Q Consensus 392 ~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~--------~~~~~~p~~~i~~~~~~ 463 (773)
+.|.+.. .+++|+|+|++||. |+|.+|..+++++||.++|++|+...... .....||+++|+..+|+
T Consensus 49 ~gC~~~~---~~~~g~IvLV~RG~--C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~ 123 (139)
T cd02132 49 DCCSPST---SKLSGSIALVERGE--CAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGD 123 (139)
T ss_pred cccCCCC---cccCCeEEEEECCC--CCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHH
Confidence 5688754 47899999999965 67999999999999999999998763211 11357999999999999
Q ss_pred HHHHHHhcCCCceE
Q 004113 464 EILAYINSKRNPVA 477 (773)
Q Consensus 464 ~l~~~~~~~~~~~~ 477 (773)
.|++.+.++...++
T Consensus 124 ~L~~~l~~g~~Vtv 137 (139)
T cd02132 124 ALNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHHcCCcEEE
Confidence 99999988765443
No 61
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.06 E-value=1.4e-05 Score=73.75 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=65.0
Q ss_pred ccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccc---cccCccccEEEecHHHHHHHHH
Q 004113 391 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV---ASSYGTFPLTVISSKEAAEILA 467 (773)
Q Consensus 391 ~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~---~~~~~~~p~~~i~~~~~~~l~~ 467 (773)
...|.+...+..+++|+|+|++|++ |.+.+|..+++++||.++|++|+..... ..+...+|.+.+ ..+|+.|++
T Consensus 41 ~~gC~~~~~~~~~~~g~IaLv~rg~--c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 41 DDACQPLPDDTPDLSGYIVLVRRGT--CTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred cccCcCCCcccccccCeEEEEECCC--CCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 4679876555568999999999976 7899999999999999999999876322 122334566666 999999999
Q ss_pred HHhcCCCceE
Q 004113 468 YINSKRNPVA 477 (773)
Q Consensus 468 ~~~~~~~~~~ 477 (773)
.+..+...++
T Consensus 118 ~l~~G~~vtv 127 (129)
T cd02124 118 ALAAGSNVTV 127 (129)
T ss_pred HHhcCCeEEE
Confidence 9987755443
No 62
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.04 E-value=1.6e-05 Score=73.15 Aligned_cols=85 Identities=16% Similarity=0.124 Sum_probs=66.4
Q ss_pred cCCCCCCcc--cc----cccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccc-------------ccCccc
Q 004113 392 RNCDLDSLA--GA----LVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA-------------SSYGTF 452 (773)
Q Consensus 392 ~~c~~~~~~--~~----~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~-------------~~~~~~ 452 (773)
..|.+.... +. ...++|+|++||. |.|.+|..+++++||.++|++|+..+... .....|
T Consensus 23 ~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~--C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 23 TGCKEFDVFFKPKKSEPGRRPVILLLDRGG--CFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred ccCCCCcccccccccccCCCceEEEEECCC--cCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 468765432 22 3788999999965 78999999999999999999998764221 123369
Q ss_pred cEEEecHHHHHHHHHHHhcCCCceEE
Q 004113 453 PLTVISSKEAAEILAYINSKRNPVAT 478 (773)
Q Consensus 453 p~~~i~~~~~~~l~~~~~~~~~~~~~ 478 (773)
|+++|+..+|+.|+..+.++...+++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999987765543
No 63
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.01 E-value=1.5e-05 Score=72.18 Aligned_cols=77 Identities=22% Similarity=0.265 Sum_probs=62.9
Q ss_pred ccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc-c-------cccCccccEEEecHHHH
Q 004113 391 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA-V-------ASSYGTFPLTVISSKEA 462 (773)
Q Consensus 391 ~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-~-------~~~~~~~p~~~i~~~~~ 462 (773)
...|.+. +..+++|+|+|++||+ |+|.+|..+++.+||.++|++|+.... . ......+|+++++..++
T Consensus 27 ~~gC~~~--~~~~l~gkIvLV~RG~--CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 27 TDACSLQ--EHAEIDGKVALVLRGG--CGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCC--CcCCcCCeEEEEECCC--CCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 3568765 5688999999999965 689999999999999999999977631 1 12234799999999999
Q ss_pred HHHHHHHhc
Q 004113 463 AEILAYINS 471 (773)
Q Consensus 463 ~~l~~~~~~ 471 (773)
+.|+.++..
T Consensus 103 ~~L~~l~~~ 111 (117)
T cd04813 103 HLLSSLLPK 111 (117)
T ss_pred HHHHHhccc
Confidence 999987654
No 64
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.96 E-value=4.1e-05 Score=70.84 Aligned_cols=91 Identities=13% Similarity=0.163 Sum_probs=69.9
Q ss_pred CCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccc---
Q 004113 370 SPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA--- 446 (773)
Q Consensus 370 ~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~--- 446 (773)
....++++.+.+ ....+...+++|||++++++.+..++.+|..++.++||.|+|++|+......
T Consensus 22 ~~~~~lV~~g~G-------------~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~ 88 (127)
T cd04819 22 EAKGEPVDAGYG-------------LPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATG 88 (127)
T ss_pred CeeEEEEEeCCC-------------CHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccc
Confidence 456777876652 2233445679999999999775447889999999999999999987764321
Q ss_pred ------ccCccccEEEecHHHHHHHHHHHhcCC
Q 004113 447 ------SSYGTFPLTVISSKEAAEILAYINSKR 473 (773)
Q Consensus 447 ------~~~~~~p~~~i~~~~~~~l~~~~~~~~ 473 (773)
.....+|++.|+.+|++.|.+.++.+.
T Consensus 89 ~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 89 DEGTEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred cccccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123579999999999999999988753
No 65
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.87 E-value=4e-05 Score=73.16 Aligned_cols=81 Identities=16% Similarity=0.161 Sum_probs=66.4
Q ss_pred cCCCCCCccc---ccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccc---c-----cCccccEEEecHH
Q 004113 392 RNCDLDSLAG---ALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA---S-----SYGTFPLTVISSK 460 (773)
Q Consensus 392 ~~c~~~~~~~---~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~---~-----~~~~~p~~~i~~~ 460 (773)
..|.+....+ .++.|+|+|++||+ |+|.+|..+++++||.++|++|+..+... . ....||+++|+..
T Consensus 51 ~gC~~~~~~~~~~~~~~g~IvLV~RG~--CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~ 128 (153)
T cd02123 51 NACSPIENPPLNSNASGSFIVLIRRGN--CSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKS 128 (153)
T ss_pred ccCCCCcccccccccCCCeEEEEECCC--CCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHH
Confidence 5688766544 78999999999965 68999999999999999999998763221 1 2458999999999
Q ss_pred HHHHHHHHHhcCCC
Q 004113 461 EAAEILAYINSKRN 474 (773)
Q Consensus 461 ~~~~l~~~~~~~~~ 474 (773)
+|+.|+.++.....
T Consensus 129 dg~~L~~~l~~~~~ 142 (153)
T cd02123 129 TGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999887644
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.37 E-value=0.0098 Score=55.49 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=58.0
Q ss_pred ccccccceEEEEecCCCC----Cchhhh-------hcccccCCceEEEEEeCCCc-------ccc---ccCccccEEEec
Q 004113 400 AGALVKGKIVLCDNDDDM----GSVVDK-------KDGVKSLGGVGVIVIDDQSR-------AVA---SSYGTFPLTVIS 458 (773)
Q Consensus 400 ~~~~~~gki~l~~~~~~~----~~~~~k-------~~~~~~~Ga~g~i~~~~~~~-------~~~---~~~~~~p~~~i~ 458 (773)
...+++|||+++.++.|. ..+..| ...+.++||.++|++|.... +.. .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 356899999999997651 156666 68899999999999996421 111 223469999999
Q ss_pred HHHHHHHHHHHhcCCCce
Q 004113 459 SKEAAEILAYINSKRNPV 476 (773)
Q Consensus 459 ~~~~~~l~~~~~~~~~~~ 476 (773)
.+++..|.+.+..+....
T Consensus 114 ~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 114 VEDADMLERLAARGKPIR 131 (134)
T ss_pred hhcHHHHHHHHhCCCCeE
Confidence 999999999988765443
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.36 E-value=0.008 Score=58.53 Aligned_cols=69 Identities=28% Similarity=0.433 Sum_probs=54.6
Q ss_pred cccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccc---------------c-----------------c-
Q 004113 401 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV---------------A-----------------S- 447 (773)
Q Consensus 401 ~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~---------------~-----------------~- 447 (773)
..+++|||+|++++. +.+.+|..+|+.+||.|+|+|++..+.. . .
T Consensus 51 gv~v~GkIvLvr~G~--~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~ 128 (183)
T cd02128 51 GVSVNGSVVLVRAGK--ISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPS 128 (183)
T ss_pred CCCCCCeEEEEECCC--CCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcc
Confidence 468999999999975 5689999999999999999999842100 0 0
Q ss_pred ---cCccccEEEecHHHHHHHHHHHhc
Q 004113 448 ---SYGTFPLTVISSKEAAEILAYINS 471 (773)
Q Consensus 448 ---~~~~~p~~~i~~~~~~~l~~~~~~ 471 (773)
.--.||+.-|+..++..|+..+.-
T Consensus 129 ~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 129 QSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 012589999999999999997754
No 68
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.09 E-value=0.23 Score=43.73 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=61.1
Q ss_pred ccEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCcEEEEEEEECCceeEEE
Q 004113 682 EGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWSNGKYKVRS 761 (773)
Q Consensus 682 ~~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~l~~~~~~~~v~~ 761 (773)
+..+.+++++|.+ ..+..|++.......--++++|..-.+ ++|++.++.|+|.... ..+.+.+.|...-.+..+.+
T Consensus 20 ~~~~~~v~l~N~s-~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~--~~g~~~~~l~i~~e~~~~~i 95 (102)
T PF14874_consen 20 QTYSRTVTLTNTS-SIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK--PLGDYEGSLVITTEGGSFEI 95 (102)
T ss_pred CEEEEEEEEEECC-CCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC--CCceEEEEEEEEECCeEEEE
Confidence 3777889999999 889999987654334556777776656 6799999999999642 33456788887765568888
Q ss_pred EEEEEe
Q 004113 762 LFVVSS 767 (773)
Q Consensus 762 P~~~~~ 767 (773)
|+-+..
T Consensus 96 ~v~a~~ 101 (102)
T PF14874_consen 96 PVKAEV 101 (102)
T ss_pred EEEEEE
Confidence 876653
No 69
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.38 E-value=0.071 Score=44.57 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=38.1
Q ss_pred CccEEEEEEEEeccCCCC-eEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEecc
Q 004113 681 KEGRTISRTVTNVAGNNE-TIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSAL 739 (773)
Q Consensus 681 ~~~~~~~~tvtn~~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 739 (773)
|+..+++.+|+|.+ ..+ ...++++..|.|-++...|..+.-.++||+++++++|..+.
T Consensus 4 G~~~~~~~tv~N~g-~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 4 GETVTVTLTVTNTG-TAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp TEEEEEEEEEE--S-SS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CCEEEEEEEEEECC-CCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 45788999999998 644 56888899999999888888776557899999999999874
No 70
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=94.98 E-value=0.045 Score=51.21 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=51.2
Q ss_pred CCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCC----------------CchhhhhcccccCCce
Q 004113 370 SPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDM----------------GSVVDKKDGVKSLGGV 433 (773)
Q Consensus 370 ~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~----------------~~~~~k~~~~~~~Ga~ 433 (773)
....++|+.+.+- ....|....+...|++|||+++.++.+. ..+..|..++.++||.
T Consensus 19 ~~~aelVfvGyGi-------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (142)
T cd04814 19 IKDAPLVFVGYGI-------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAA 91 (142)
T ss_pred ccceeeEEecCCc-------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCc
Confidence 3467778776531 1245888888889999999999987651 1466799999999999
Q ss_pred EEEEEeCCC
Q 004113 434 GVIVIDDQS 442 (773)
Q Consensus 434 g~i~~~~~~ 442 (773)
|+|++++..
T Consensus 92 gvIii~~~~ 100 (142)
T cd04814 92 GVLIVHELA 100 (142)
T ss_pred EEEEEeCCC
Confidence 999999876
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.69 E-value=0.088 Score=49.87 Aligned_cols=88 Identities=23% Similarity=0.309 Sum_probs=59.3
Q ss_pred ceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCC----------------CCchhhhhcccccCCceEE
Q 004113 372 VYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDD----------------MGSVVDKKDGVKSLGGVGV 435 (773)
Q Consensus 372 ~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~----------------~~~~~~k~~~~~~~Ga~g~ 435 (773)
.-++||.+.+. ....|....+...+++|||+|+.++.. .+.+..|..++...||.|+
T Consensus 21 tg~lVfvGyGi-------~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aV 93 (151)
T cd04822 21 TAPVVFAGYGI-------TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAV 93 (151)
T ss_pred eEeEEEecCCc-------CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEE
Confidence 45677766431 124577777778899999999987631 1567789999999999999
Q ss_pred EEEeCCCccccccCcccc------EEEecHHHHHHHHH
Q 004113 436 IVIDDQSRAVASSYGTFP------LTVISSKEAAEILA 467 (773)
Q Consensus 436 i~~~~~~~~~~~~~~~~p------~~~i~~~~~~~l~~ 467 (773)
|++++..... .....+| .++++....+.+..
T Consensus 94 Iv~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (151)
T cd04822 94 IVVNGPNSHS-GDADRLPRFGGTAPQRVDIAAADPWFT 130 (151)
T ss_pred EEEeCCcccC-cccccccccCccceEEechHHHHHHhh
Confidence 9999876332 1111111 55666665555554
No 72
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.65 E-value=0.037 Score=51.47 Aligned_cols=65 Identities=26% Similarity=0.315 Sum_probs=49.7
Q ss_pred CceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCC----------CchhhhhcccccCCceEEEEEeC
Q 004113 371 PVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDM----------GSVVDKKDGVKSLGGVGVIVIDD 440 (773)
Q Consensus 371 ~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~----------~~~~~k~~~~~~~Ga~g~i~~~~ 440 (773)
..-++|+.+.+. ....|....+...+++|||+|+.++.+. ..+..|..++.++||.|+|++++
T Consensus 22 v~gelVfvGyG~-------~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 22 VEAPLVFVGYGL-------VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTT 94 (137)
T ss_pred ceEeEEEecCCc-------CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 345666665431 1245777777788999999999997653 24678999999999999999998
Q ss_pred CC
Q 004113 441 QS 442 (773)
Q Consensus 441 ~~ 442 (773)
..
T Consensus 95 ~~ 96 (137)
T cd04820 95 PR 96 (137)
T ss_pred Cc
Confidence 66
No 73
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=94.28 E-value=0.11 Score=56.67 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=62.6
Q ss_pred cccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc--------ccccCccccEEEecHHHHHHHHHHHhcC
Q 004113 401 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA--------VASSYGTFPLTVISSKEAAEILAYINSK 472 (773)
Q Consensus 401 ~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~--------~~~~~~~~p~~~i~~~~~~~l~~~~~~~ 472 (773)
+..+++++++..||. |.|.+|...++++||.+++++|+..+. ....+..||+++++.++++.+.....++
T Consensus 91 ~~kl~~~~~~v~RGn--C~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~ 168 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGN--CSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSN 168 (541)
T ss_pred CccccceeEEEeccc--ceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccC
Confidence 567899999999954 789999999999999999999995521 2234568999999999999999866666
Q ss_pred CCceEEEe
Q 004113 473 RNPVATIL 480 (773)
Q Consensus 473 ~~~~~~i~ 480 (773)
.+..+.+.
T Consensus 169 ~~V~~~lY 176 (541)
T KOG2442|consen 169 DNVELALY 176 (541)
T ss_pred CeEEEEEE
Confidence 65544443
No 74
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=92.47 E-value=1.2 Score=40.36 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=38.9
Q ss_pred EEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEecc
Q 004113 684 RTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSAL 739 (773)
Q Consensus 684 ~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 739 (773)
-..+++++|.+ ..+.+|+++++.++|+++......+++ ++||+.++.|.+..+.
T Consensus 33 N~Y~lkl~Nkt-~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 33 NQYTLKLTNKT-NQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEE-S-SS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEECC-CCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 35789999999 999999999999889999665578888 6799999999999974
No 75
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=92.27 E-value=1.6 Score=39.81 Aligned_cols=74 Identities=20% Similarity=0.352 Sum_probs=54.3
Q ss_pred cCCCccEEEEEEEEeccCCCCeEEEEEEeCC----CC--------------c------EEEEecCeEEEccCCcEEEEEE
Q 004113 678 FDGKEGRTISRTVTNVAGNNETIYTVAVDAP----QG--------------L------NVKVIPEELQFTKSGQKLSYQV 733 (773)
Q Consensus 678 ~~~~~~~~~~~tvtn~~~~~~~ty~~~~~~~----~g--------------~------~v~v~p~~~~~~~~~~~~~~~v 733 (773)
+..++++++.++|+|.+ +.+.+|.+.+... .| + -+++ |..+++ +++|++++++
T Consensus 23 ~~P~q~~~l~v~i~N~s-~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~ 99 (121)
T PF06030_consen 23 VKPGQKQTLEVRITNNS-DKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTF 99 (121)
T ss_pred eCCCCEEEEEEEEEeCC-CCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEE
Confidence 44566899999999999 8999999876431 11 0 0222 455777 6899999999
Q ss_pred EEEeccCCCCCcEEEEEEEEC
Q 004113 734 TFTSALSPLKEDVFGSITWSN 754 (773)
Q Consensus 734 t~~~~~~~~~~~~~G~l~~~~ 754 (773)
+++.+...-.+.+-|.|.+.+
T Consensus 100 ~i~~P~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 100 TIKMPKKAFDGIILGGIYFSE 120 (121)
T ss_pred EEEcCCCCcCCEEEeeEEEEe
Confidence 999986656677778888764
No 76
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=91.37 E-value=0.22 Score=50.31 Aligned_cols=40 Identities=35% Similarity=0.372 Sum_probs=35.0
Q ss_pred cccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCC
Q 004113 401 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQS 442 (773)
Q Consensus 401 ~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~ 442 (773)
..+++|||+|++++. +.+..|..+|+.+||.|+|+|++..
T Consensus 67 gvdv~GKIvLvr~G~--~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGG--IFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCC--ccHHHHHHHHHHcCCEEEEEEeCch
Confidence 568999999999865 3567899999999999999999875
No 77
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=91.07 E-value=0.19 Score=47.05 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=35.3
Q ss_pred ccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCC
Q 004113 402 ALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQS 442 (773)
Q Consensus 402 ~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~ 442 (773)
-+++|||+|++.|. ..+..|..+|+..||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~--~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQ--APLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccC--cchHHHHHHHHHCCCeEEEEecChh
Confidence 57999999999976 5699999999999999999999865
No 78
>COG1470 Predicted membrane protein [Function unknown]
Probab=85.48 E-value=7 Score=43.24 Aligned_cols=72 Identities=22% Similarity=0.243 Sum_probs=56.0
Q ss_pred CCccEEEEEEEEeccCCCC-eEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEecc-CCCCCcEEEEEEEE
Q 004113 680 GKEGRTISRTVTNVAGNNE-TIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSAL-SPLKEDVFGSITWS 753 (773)
Q Consensus 680 ~~~~~~~~~tvtn~~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~~~~G~l~~~ 753 (773)
.|+..+....+.|.| +.+ ..-++++..|+|-++.|+|.++--.+++|.+++++|++++. ..++.| +=+|+-+
T Consensus 395 aGee~~i~i~I~NsG-na~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY-~i~i~~k 468 (513)
T COG1470 395 AGEEKTIRISIENSG-NAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDY-RITITAK 468 (513)
T ss_pred CCccceEEEEEEecC-CCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcE-EEEEEEe
Confidence 356888999999999 655 45689999999999999999766668899999999999974 444444 4444443
No 79
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=84.37 E-value=1.2 Score=41.50 Aligned_cols=78 Identities=13% Similarity=0.192 Sum_probs=56.4
Q ss_pred ccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc------------ccccCccccEEEec
Q 004113 391 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA------------VASSYGTFPLTVIS 458 (773)
Q Consensus 391 ~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~------------~~~~~~~~p~~~i~ 458 (773)
..+|..-. +..+..+.+++++||+ |+|..|..++.++||..+|+.++.... ...+...+|++++-
T Consensus 74 p~aC~elr-N~~f~~d~vaL~eRGe--CSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fll 150 (193)
T KOG3920|consen 74 PHACEELR-NEIFAPDSVALMERGE--CSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLL 150 (193)
T ss_pred hhHHHHHh-hcccCCCcEEEEecCC--ceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEe
Confidence 34566432 3456778999999965 789999999999999999999876521 12234578999988
Q ss_pred HHHHHHHHHHHhc
Q 004113 459 SKEAAEILAYINS 471 (773)
Q Consensus 459 ~~~~~~l~~~~~~ 471 (773)
..+|..++.-+..
T Consensus 151 g~~Gy~ir~sL~r 163 (193)
T KOG3920|consen 151 GVTGYYIRVSLKR 163 (193)
T ss_pred ccceEEEehhHHH
Confidence 8887655554443
No 80
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.51 E-value=2.9 Score=44.89 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=59.2
Q ss_pred cCCCCCCcc---cccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccc------cccCccccEEEecHHHH
Q 004113 392 RNCDLDSLA---GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV------ASSYGTFPLTVISSKEA 462 (773)
Q Consensus 392 ~~c~~~~~~---~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~------~~~~~~~p~~~i~~~~~ 462 (773)
.+|++.... ...-...++++.|++ |+|.+|..+++.+|..++|+||+..... ......++.++++..-|
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~--CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~g 140 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGG--CSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSG 140 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccC--CchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehH
Confidence 346654332 344567899999976 7899999999999999999999876331 23445788999999999
Q ss_pred HHHHHHHhc
Q 004113 463 AEILAYINS 471 (773)
Q Consensus 463 ~~l~~~~~~ 471 (773)
+.|..|...
T Consensus 141 e~l~~~~~~ 149 (348)
T KOG4628|consen 141 ELLSSYAGR 149 (348)
T ss_pred HHHHHhhcc
Confidence 999887543
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=76.78 E-value=37 Score=37.84 Aligned_cols=64 Identities=14% Similarity=0.281 Sum_probs=48.4
Q ss_pred CccEEEEEEEEeccCCCCeEEEEEEe-CCCCcEEEEecCeEEE----ccCCcEEEEEEEEEecc-CCCCCc
Q 004113 681 KEGRTISRTVTNVAGNNETIYTVAVD-APQGLNVKVIPEELQF----TKSGQKLSYQVTFTSAL-SPLKED 745 (773)
Q Consensus 681 ~~~~~~~~tvtn~~~~~~~ty~~~~~-~~~g~~v~v~p~~~~~----~~~~~~~~~~vt~~~~~-~~~~~~ 745 (773)
+.+..|++++.|.+ ..+.+|...+. .|+|-+..+.-..+.+ .++||+++|+|.+..+. ...+.|
T Consensus 283 ~~t~sf~V~IeN~g-~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Y 352 (513)
T COG1470 283 STTASFTVSIENRG-KQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTY 352 (513)
T ss_pred CCceEEEEEEccCC-CCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCce
Confidence 34678999999999 99999999998 7888777665443333 26799999999998863 334444
No 82
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=76.51 E-value=1.8 Score=51.35 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.9
Q ss_pred CCCCCCcEEEEEccCCCCCCCCCC
Q 004113 134 QDQESDTIIGILDTGVWPESESFN 157 (773)
Q Consensus 134 ~~~G~Gv~VaVIDtGid~~Hp~f~ 157 (773)
.+.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 678999999999999999988775
No 83
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=76.12 E-value=23 Score=32.07 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=45.8
Q ss_pred cEEEEEEEEeccCCCCeEEEEEEeC---CCC----cEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCcEEEEEEEE
Q 004113 683 GRTISRTVTNVAGNNETIYTVAVDA---PQG----LNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWS 753 (773)
Q Consensus 683 ~~~~~~tvtn~~~~~~~ty~~~~~~---~~g----~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~l~~~ 753 (773)
..+.+++|+|.+ +.+..+.+.+.. ... -.+.++|..+++ ++|+++.+.| +.....+......=+|.++
T Consensus 15 ~~~~~i~v~N~~-~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNS-DQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESS-SSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCEEEEEEEcCC-CCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 457789999999 777777777664 111 257789999999 6799999999 6644323443333456654
No 84
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=74.23 E-value=29 Score=30.48 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=39.1
Q ss_pred cEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEec
Q 004113 683 GRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSA 738 (773)
Q Consensus 683 ~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 738 (773)
..+..++|+|.+ +....|.+....|.... |.|..-.+ +++++.++.|++...
T Consensus 19 ~~~~~l~l~N~s-~~~i~fKiktt~~~~y~--v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 19 QQSCELTLTNPS-DKPIAFKIKTTNPNRYR--VKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp -EEEEEEEEE-S-SSEEEEEEEES-TTTEE--EESSEEEE--TTEEEEEEEEE-SS
T ss_pred eEEEEEEEECCC-CCcEEEEEEcCCCceEE--ecCCCEEE-CCCCEEEEEEEEEec
Confidence 577888999999 88888888888776655 56998777 679999999999885
No 85
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=71.02 E-value=17 Score=40.90 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=46.1
Q ss_pred cEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEec
Q 004113 683 GRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSA 738 (773)
Q Consensus 683 ~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 738 (773)
.-..++.+.|.+ ..+.+|+++++..++.++...++.+++ ++||+.++.|++..+
T Consensus 347 ~N~Y~~~i~Nk~-~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 347 ENTYTLKILNKT-EQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEEECC-CCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEec
Confidence 345788999999 899999999999999999876457777 679999999999886
No 86
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=70.55 E-value=5.3 Score=38.20 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=34.7
Q ss_pred CcccccccceEEEEecCCCCC-----------------chhhhhcccccCCceEEEEEeCCC
Q 004113 398 SLAGALVKGKIVLCDNDDDMG-----------------SVVDKKDGVKSLGGVGVIVIDDQS 442 (773)
Q Consensus 398 ~~~~~~~~gki~l~~~~~~~~-----------------~~~~k~~~~~~~Ga~g~i~~~~~~ 442 (773)
.+...|++|||+++..++... ....|...+.+.||.|+|++.+..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 555779999999999765311 123488899999999999998754
No 87
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=62.36 E-value=66 Score=30.02 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=49.9
Q ss_pred EEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCcEEEEEEEE
Q 004113 684 RTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWS 753 (773)
Q Consensus 684 ~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~l~~~ 753 (773)
..+.+.+-|.....-...++.......+++--.|..+++ .+++.++++.++.... ...+.+||.|++.
T Consensus 71 IvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS-tetGvIfG~I~Yd 138 (140)
T PF07718_consen 71 IVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS-TETGVIFGNIVYD 138 (140)
T ss_pred EEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe-ccCCEEEEEEEEe
Confidence 455666677662233455566666678898888999998 5788889999998864 5568999999875
No 88
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=53.56 E-value=96 Score=27.23 Aligned_cols=56 Identities=27% Similarity=0.292 Sum_probs=36.5
Q ss_pred CccEEEEEEEEeccCCCC-eEEE-----EEEeCCCCcE---EEEecCeEEEccCCcEEEEEEEEEecc
Q 004113 681 KEGRTISRTVTNVAGNNE-TIYT-----VAVDAPQGLN---VKVIPEELQFTKSGQKLSYQVTFTSAL 739 (773)
Q Consensus 681 ~~~~~~~~tvtn~~~~~~-~ty~-----~~~~~~~g~~---v~v~p~~~~~~~~~~~~~~~vt~~~~~ 739 (773)
++..++.++++|.. +.. .+-+ .+++.+ |+. .......+++ +++|+.++++++...+
T Consensus 14 G~d~~v~v~~~N~~-~~~l~~v~~~l~~~~v~yt-G~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 14 GQDFTVSVSFTNPS-SEPLRNVSLNLCAFTVEYT-GLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp TSEEEEEEEEEE-S-SS-EECEEEEEEEEEEECT-TTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCCEEEEEEEEeCC-cCccccceeEEEEEEEEEC-CcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 45889999999998 666 5522 334544 664 4555666776 6789999999998763
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=52.91 E-value=1.3e+02 Score=25.53 Aligned_cols=54 Identities=24% Similarity=0.185 Sum_probs=32.8
Q ss_pred CccEEEEEEEEeccCCC-CeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEec
Q 004113 681 KEGRTISRTVTNVAGNN-ETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSA 738 (773)
Q Consensus 681 ~~~~~~~~tvtn~~~~~-~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 738 (773)
++..+++.+|+|.| .. ...+.+.+... |..+. +...-.+ ++|++.++++++...
T Consensus 18 g~~~~i~~~V~N~G-~~~~~~~~v~~~~~-~~~~~-~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNG-TADAENVTVRLYLD-GNSVS-TVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-S-SS-BEEEEEEEEET-TEEEE-EEEESEB--TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECC-CCCCCCEEEEEEEC-Cceec-cEEECCc-CCCcEEEEEEEEEeC
Confidence 34889999999999 54 46677766543 33331 1111244 578888888888775
No 90
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=50.29 E-value=62 Score=23.68 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=24.1
Q ss_pred EEEEeccCCCCeEEEEEEeCCCC-cEEEEecCeEEEccCCcEEEEEEEE
Q 004113 688 RTVTNVAGNNETIYTVAVDAPQG-LNVKVIPEELQFTKSGQKLSYQVTF 735 (773)
Q Consensus 688 ~tvtn~~~~~~~ty~~~~~~~~g-~~v~v~p~~~~~~~~~~~~~~~vt~ 735 (773)
++++|+| +.+...+ .+...=| ..+. .+.-.+ ++||+..++|++
T Consensus 2 F~~~N~g-~~~L~I~-~v~tsCgCt~~~--~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTG-DSPLVIT-DVQTSCGCTTAE--YSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECC-CCcEEEE-EeeEccCCEEee--CCcceE-CCCCEEEEEEEC
Confidence 6788999 5544432 2332222 3333 333334 679998888874
No 91
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=50.17 E-value=48 Score=27.59 Aligned_cols=43 Identities=30% Similarity=0.461 Sum_probs=30.5
Q ss_pred EEEEecCeEEEccCCcEEEEEEEEEeccCCCCCcEEEEEEEECCceeE
Q 004113 712 NVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWSNGKYKV 759 (773)
Q Consensus 712 ~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~l~~~~~~~~v 759 (773)
.+++.|..+++ ..|++..|+++++... ... ...++|+..++.|
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~--~~~--~~~v~w~Ssn~~v 46 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSS--AKV--TGKVTWTSSNPSV 46 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCC--CCc--cceEEEEECCCcE
Confidence 57788999988 5789999999976542 111 5668888764443
No 92
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=41.70 E-value=28 Score=34.89 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=22.2
Q ss_pred CchhhHHHHHHHHHHHhhhhhccc-ccCCCCceEEEEe
Q 004113 1 MKGLVVLFPVLFLFLGSFFGDAAA-AQGSKNGVYIVYM 37 (773)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~yIV~l 37 (773)
|||++.++.++++|.|.+.++..+ ++.-..|.|=|.+
T Consensus 1 mk~~~~~~~~~~~~~f~~~~~~~~~~~~L~DGtYsV~f 38 (217)
T TIGR03656 1 MKKILVFAFFTTILAFIILSAGFSNSANLADGTYTINY 38 (217)
T ss_pred CcchhhHHHHHHHHHHhcccccccccccccCceEEEEE
Confidence 899887655444444554444333 4445678887666
No 93
>PF15284 PAGK: Phage-encoded virulence factor
Probab=40.04 E-value=22 Score=27.74 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=6.9
Q ss_pred CchhhHHHHHHH
Q 004113 1 MKGLVVLFPVLF 12 (773)
Q Consensus 1 Mk~~~~~~~~~~ 12 (773)
|||+..+|+.++
T Consensus 1 Mkk~ksifL~l~ 12 (61)
T PF15284_consen 1 MKKFKSIFLALV 12 (61)
T ss_pred ChHHHHHHHHHH
Confidence 887765443333
No 94
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=39.78 E-value=79 Score=26.59 Aligned_cols=54 Identities=24% Similarity=0.311 Sum_probs=25.4
Q ss_pred EEEEEEEEeccCCCCe--------EEEEEEeCCCCcEEE---------EecCeEEEccCCcEEEEEEEEEecc
Q 004113 684 RTISRTVTNVAGNNET--------IYTVAVDAPQGLNVK---------VIPEELQFTKSGQKLSYQVTFTSAL 739 (773)
Q Consensus 684 ~~~~~tvtn~~~~~~~--------ty~~~~~~~~g~~v~---------v~p~~~~~~~~~~~~~~~vt~~~~~ 739 (773)
..++++|+|.+ +.+. .|.+.+..+.|-.|- ---...++ ++||+++|+.+++..+
T Consensus 2 v~~~l~v~N~s-~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 2 VEFTLTVTNNS-DEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEEEEEE-S-SS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS--
T ss_pred EEEEEEEEeCC-CCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCCC
Confidence 35677888887 4333 344445544443322 11223445 6799999998887653
No 95
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=37.88 E-value=19 Score=22.91 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=7.2
Q ss_pred CchhhHHHHHHHHH
Q 004113 1 MKGLVVLFPVLFLF 14 (773)
Q Consensus 1 Mk~~~~~~~~~~~~ 14 (773)
|||+++.++.++.+
T Consensus 7 mKkil~~l~a~~~L 20 (25)
T PF08139_consen 7 MKKILFPLLALFML 20 (25)
T ss_pred HHHHHHHHHHHHHH
Confidence 37766544444433
No 96
>PLN03080 Probable beta-xylosidase; Provisional
Probab=31.21 E-value=1.3e+02 Score=36.70 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=31.9
Q ss_pred cEEEEEEEEeccCCCCeEEEEE--EeCCCC-c----EEEEecCeEEEccCCcEEEEEEEEEe
Q 004113 683 GRTISRTVTNVAGNNETIYTVA--VDAPQG-L----NVKVIPEELQFTKSGQKLSYQVTFTS 737 (773)
Q Consensus 683 ~~~~~~tvtn~~~~~~~ty~~~--~~~~~g-~----~v~v~p~~~~~~~~~~~~~~~vt~~~ 737 (773)
..+++++|||+| +.+....+. +..|.. + +--+--..+.+ ++||+++++++++.
T Consensus 685 ~~~v~v~VtNtG-~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVG-EMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECC-cccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 477999999999 755544443 444422 1 11111122333 67999999888875
No 97
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=31.11 E-value=49 Score=23.75 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=19.1
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcc
Q 004113 559 VAAIKHQNPTFSPSEIKSAVMTTA 582 (773)
Q Consensus 559 aALl~~~~p~ls~~~Ik~~L~~TA 582 (773)
+--|++.+|++++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345788999999999999997654
No 98
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=31.00 E-value=1.5e+02 Score=36.37 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=41.3
Q ss_pred CCCCCCCCeEEEeccCC-------CccEEEEEEEEeccCCCCe--EEEEEEeCCCCcEEEEec-------CeEEEccCCc
Q 004113 664 SISNINYPSIAVSSFDG-------KEGRTISRTVTNVAGNNET--IYTVAVDAPQGLNVKVIP-------EELQFTKSGQ 727 (773)
Q Consensus 664 ~~~~ln~ps~~~~~~~~-------~~~~~~~~tvtn~~~~~~~--ty~~~~~~~~g~~v~v~p-------~~~~~~~~~~ 727 (773)
....|.|-.|...++.- +...+++++|||+| +.+. +-.+-+..|.+- +. .| ..+.+ ++||
T Consensus 642 FG~GLSYT~F~ys~l~v~~~~~~~~~~i~v~v~V~NtG-~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGe 717 (765)
T PRK15098 642 FGYGLSYTTFTVSDVKLSSPTMKRDGKVTASVTVTNTG-KREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGE 717 (765)
T ss_pred ccCCCCCccEEeeccEeccccccCCCeEEEEEEEEECC-CCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCC
Confidence 44556666665543321 23688999999999 6544 334444444321 11 12 12233 6899
Q ss_pred EEEEEEEEEec
Q 004113 728 KLSYQVTFTSA 738 (773)
Q Consensus 728 ~~~~~vt~~~~ 738 (773)
++++++++...
T Consensus 718 s~~V~~~l~~~ 728 (765)
T PRK15098 718 TQTVSFPIDIE 728 (765)
T ss_pred eEEEEEeecHH
Confidence 99999888775
No 99
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=30.93 E-value=2e+02 Score=21.82 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=23.6
Q ss_pred ccEEEEEEEEeccCCCCeE-EEEEEeCCCCcEEEEecCeEEE
Q 004113 682 EGRTISRTVTNVAGNNETI-YTVAVDAPQGLNVKVIPEELQF 722 (773)
Q Consensus 682 ~~~~~~~tvtn~~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~ 722 (773)
+..+++++++|.| ..+.+ ..++-.-|+|+.. .|.++++
T Consensus 12 d~v~Yti~v~N~g-~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 12 DTITYTITVTNNG-NVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CEEEEEEEEEECC-CCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 4889999999999 64433 3444445566554 2444443
No 100
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.76 E-value=3e+02 Score=27.05 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=43.0
Q ss_pred CccEEEEEEEEeccCCCCeEEEEEEeC----CCCcEEEEec-CeEEE--ccCCcEEEEEEEEEeccCCCCCcEEEE--EE
Q 004113 681 KEGRTISRTVTNVAGNNETIYTVAVDA----PQGLNVKVIP-EELQF--TKSGQKLSYQVTFTSALSPLKEDVFGS--IT 751 (773)
Q Consensus 681 ~~~~~~~~tvtn~~~~~~~ty~~~~~~----~~g~~v~v~p-~~~~~--~~~~~~~~~~vt~~~~~~~~~~~~~G~--l~ 751 (773)
++..+++.+|.|+| + ..-|.+++.. ++.+++. +. .+.++ -++|+..+.++++.+. ..+.+.++. ++
T Consensus 37 g~~v~V~~~iyN~G-~-~~A~dV~l~D~~fp~~~F~lv-sG~~s~~~~~i~pg~~vsh~~vv~p~--~~G~f~~~~a~Vt 111 (181)
T PF05753_consen 37 GEDVTVTYTIYNVG-S-SAAYDVKLTDDSFPPEDFELV-SGSLSASWERIPPGENVSHSYVVRPK--KSGYFNFTPAVVT 111 (181)
T ss_pred CcEEEEEEEEEECC-C-CeEEEEEEECCCCCccccEec-cCceEEEEEEECCCCeEEEEEEEeee--eeEEEEccCEEEE
Confidence 45789999999999 4 5677787765 2444442 21 11111 3678898988888874 355554443 44
Q ss_pred EEC
Q 004113 752 WSN 754 (773)
Q Consensus 752 ~~~ 754 (773)
.++
T Consensus 112 Y~~ 114 (181)
T PF05753_consen 112 YRD 114 (181)
T ss_pred EEC
Confidence 544
No 101
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=30.53 E-value=75 Score=22.23 Aligned_cols=14 Identities=43% Similarity=0.617 Sum_probs=7.6
Q ss_pred CchhhHHHHHHHHH
Q 004113 1 MKGLVVLFPVLFLF 14 (773)
Q Consensus 1 Mk~~~~~~~~~~~~ 14 (773)
||.+.+.|+++++.
T Consensus 1 Mk~l~~a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSLAFALLLLA 14 (36)
T ss_pred CceeHHHHHHHHHH
Confidence 78765544444443
No 102
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=30.27 E-value=40 Score=22.91 Aligned_cols=13 Identities=31% Similarity=0.871 Sum_probs=10.9
Q ss_pred chhhHHHHHHHHH
Q 004113 550 MSCPHISGVVAAI 562 (773)
Q Consensus 550 mAaP~VAG~aALl 562 (773)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998854
No 103
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=29.40 E-value=1.2e+02 Score=24.62 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=20.5
Q ss_pred CccEEEEEEEEeccCCCCe-EEEEEEeCCCCcEE
Q 004113 681 KEGRTISRTVTNVAGNNET-IYTVAVDAPQGLNV 713 (773)
Q Consensus 681 ~~~~~~~~tvtn~~~~~~~-ty~~~~~~~~g~~v 713 (773)
|+..+++++|+|.| +... ...+.-..|.|+++
T Consensus 40 Gd~v~ytitvtN~G-~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 40 GDTVTYTITVTNTG-PAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CCEEEEEEEEEECC-CCeeEeEEEEEcCCCCCEE
Confidence 44889999999999 5442 24444444566554
No 104
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.38 E-value=1.3e+02 Score=27.68 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=22.0
Q ss_pred cEEEEecceeeEEEEEcCHHHHHHHhCCCCeE
Q 004113 65 SIIRSYKHGFSGFAARLSAEEAHALSKKPGVV 96 (773)
Q Consensus 65 ~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~ 96 (773)
++.|.=+....-+.+..++-.+..|.++|++.
T Consensus 94 kidY~D~yA~E~vdId~tkvd~k~L~k~~G~s 125 (152)
T COG4808 94 KLDYKDTYAQENVDIDMTKVDFKALQKISGIS 125 (152)
T ss_pred eeeeecccceeeeccceeeecHHHHhcCcCcc
Confidence 33333334566677778888888899988874
No 105
>COG5510 Predicted small secreted protein [Function unknown]
Probab=28.96 E-value=55 Score=23.80 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=6.0
Q ss_pred CchhhHHHHHHH
Q 004113 1 MKGLVVLFPVLF 12 (773)
Q Consensus 1 Mk~~~~~~~~~~ 12 (773)
|||..++.++++
T Consensus 2 mk~t~l~i~~vl 13 (44)
T COG5510 2 MKKTILLIALVL 13 (44)
T ss_pred chHHHHHHHHHH
Confidence 777544433333
No 106
>PRK13202 ureB urease subunit beta; Reviewed
Probab=28.02 E-value=1.3e+02 Score=26.34 Aligned_cols=50 Identities=8% Similarity=0.185 Sum_probs=26.6
Q ss_pred EEEEEEEEeccCCCC----eEEEEEEeC---------CCCcEEEEe-cCeEEEccCCcEEEEEEEE
Q 004113 684 RTISRTVTNVAGNNE----TIYTVAVDA---------PQGLNVKVI-PEELQFTKSGQKLSYQVTF 735 (773)
Q Consensus 684 ~~~~~tvtn~~~~~~----~ty~~~~~~---------~~g~~v~v~-p~~~~~~~~~~~~~~~vt~ 735 (773)
.+++++|+|+| +.+ +.|++-=.. .-|..+.+- -..+.| ++|+++++++.-
T Consensus 21 ~~~~l~V~NtG-DRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV~ 84 (104)
T PRK13202 21 SRLQMRIINAG-DRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF-EPGIPQIVGLVP 84 (104)
T ss_pred ceEEEEEEeCC-CCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE-CCCCeEEEEEEE
Confidence 57889999999 654 445442111 122222221 223445 568888666543
No 107
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=27.40 E-value=31 Score=19.98 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=5.3
Q ss_pred CchhhHHHHHHH
Q 004113 1 MKGLVVLFPVLF 12 (773)
Q Consensus 1 Mk~~~~~~~~~~ 12 (773)
|.|+++++.+++
T Consensus 1 MMk~vIIlvvLL 12 (19)
T PF13956_consen 1 MMKLVIILVVLL 12 (19)
T ss_pred CceehHHHHHHH
Confidence 455544433333
No 108
>PRK15019 CsdA-binding activator; Provisional
Probab=27.30 E-value=58 Score=30.80 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=28.0
Q ss_pred eeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 004113 543 NVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKS 576 (773)
Q Consensus 543 ~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~ 576 (773)
..+.|.| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4445555 58999999999999999999999976
No 109
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=27.19 E-value=29 Score=15.75 Aligned_cols=6 Identities=33% Similarity=0.656 Sum_probs=4.0
Q ss_pred cccCCC
Q 004113 496 YFSARG 501 (773)
Q Consensus 496 ~fSs~G 501 (773)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 467776
No 110
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=27.14 E-value=3.6e+02 Score=24.01 Aligned_cols=69 Identities=26% Similarity=0.343 Sum_probs=44.9
Q ss_pred eecc-CCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCC---CCCCCCcHHHHHHHHHHhC-CcEEE
Q 004113 239 IGGS-PGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGI---VRPLTDDPIALGAFHAVEH-GITVV 313 (773)
Q Consensus 239 ~GvA-P~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~---~~~~~~~~~~~~~~~a~~~-Gi~vV 313 (773)
.... ++++|+.+--|+ +|....++.-++++.+.|+++|-+|-...... .=++ .+.+. ....++ |+-||
T Consensus 31 ~~y~~~~~elvgf~~Cg---GCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~-~~~~~---~~I~~~~gi~VV 103 (107)
T PF08821_consen 31 ARYDDEDVELVGFFTCG---GCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPH-IDEIK---KIIEEKFGIEVV 103 (107)
T ss_pred ccCCCCCeEEEEEeeCC---CCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCC-HHHHH---HHHHHHhCCCEe
Confidence 3444 468888765543 78888999999999999999999987654321 0122 23332 333344 88877
Q ss_pred E
Q 004113 314 C 314 (773)
Q Consensus 314 ~ 314 (773)
.
T Consensus 104 ~ 104 (107)
T PF08821_consen 104 E 104 (107)
T ss_pred e
Confidence 5
No 111
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=26.74 E-value=1.5e+02 Score=26.03 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=11.6
Q ss_pred cEEEEEEEEeccCCCC
Q 004113 683 GRTISRTVTNVAGNNE 698 (773)
Q Consensus 683 ~~~~~~tvtn~~~~~~ 698 (773)
..+.+++|+|.| +.+
T Consensus 19 r~~~~l~V~NtG-DRp 33 (101)
T cd00407 19 REAVTLKVKNTG-DRP 33 (101)
T ss_pred CCEEEEEEEeCC-Ccc
Confidence 456889999999 654
No 112
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=26.46 E-value=2.7e+02 Score=32.18 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=43.4
Q ss_pred CchhhHHHHHHHHHHHhhhhhcccccCCCCceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEecceeeEEEEE
Q 004113 1 MKGLVVLFPVLFLFLGSFFGDAAAAQGSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAAR 80 (773)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~ 80 (773)
|||++++++||+|+.. .++++.+..-....|-+.+++.+ .....+.+.+..+.. ..+-..-+-.++|--..
T Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~w~~~~~~~~~~~~d------i~~vl~~~a~~~g~n-ivv~~~V~G~vtgr~~~ 71 (499)
T PRK15346 1 MKKLLILIFLFLLNTA--KFAASKSIPWQGNPFFIYSRGMP------LAEVLHDLGANYGIP-VVISPEINDTFSGKIRD 71 (499)
T ss_pred CchhHHHHHHHHHhhh--hhhccCCCCCCCCCEEEEECCCc------HHHHHHHHHHHhCCC-EEECccccccEEeEEcC
Confidence 7887766555555433 33333332233456777888777 233333333333221 11111111123332223
Q ss_pred cCHHH-HHHHhCCCCeEEEecCcee
Q 004113 81 LSAEE-AHALSKKPGVVSIFPDPVL 104 (773)
Q Consensus 81 l~~~~-i~~L~~~p~V~~V~~~~~~ 104 (773)
++.++ ++.|.+.-+..+++....+
T Consensus 72 ~~~~~~l~~il~~~gl~~~~~G~vl 96 (499)
T PRK15346 72 GPPVKILNELARRYHLTWYYDGNTL 96 (499)
T ss_pred CCHHHHHHHHHHHhCcEEEEcCCEE
Confidence 45544 4666666665555544433
No 113
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=26.33 E-value=62 Score=30.24 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=29.1
Q ss_pred ceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 004113 542 FNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSA 577 (773)
Q Consensus 542 y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~ 577 (773)
-..+.|.| =|+.|-|.+|||.+.+-..+|++|.+.
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 34455666 589999999999999999999999743
No 114
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=26.29 E-value=3.8e+02 Score=34.69 Aligned_cols=85 Identities=13% Similarity=0.210 Sum_probs=51.6
Q ss_pred CccEEEEEEEEeccCCCCeEE-EEEEeCC-----------------------------CCcEEEEecCeEEEccCCcEEE
Q 004113 681 KEGRTISRTVTNVAGNNETIY-TVAVDAP-----------------------------QGLNVKVIPEELQFTKSGQKLS 730 (773)
Q Consensus 681 ~~~~~~~~tvtn~~~~~~~ty-~~~~~~~-----------------------------~g~~v~v~p~~~~~~~~~~~~~ 730 (773)
|+.++|++|++|.| ..+..| .++.... +.+++.-.+ .+ ++||+.+
T Consensus 798 GE~~~~~ItL~N~S-~~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~yelE~~l~~~~~~~i~~~~---~I-~Pg~~~~ 872 (1185)
T PF08626_consen 798 GEKQTFTITLRNTS-SVPVDFLSFSFQDSTIEPLQKALSNKDLSPDELYELEWQLFKLPAFRILNKP---PI-PPGESAT 872 (1185)
T ss_pred CcEEEEEEEEEECC-ccccceEEEEEEeccHHHHhhhhhcccCChhhhhhhhhhhhcCcceeecccC---cc-CCCCEEE
Confidence 56899999999999 777655 4443310 011111111 44 6799999
Q ss_pred EEEEEEeccCCCCCcEEEEEEEECC----------ceeEEEEEEEEeeCCC
Q 004113 731 YQVTFTSALSPLKEDVFGSITWSNG----------KYKVRSLFVVSSKSSK 771 (773)
Q Consensus 731 ~~vt~~~~~~~~~~~~~G~l~~~~~----------~~~v~~P~~~~~~~~~ 771 (773)
|+|.+..... .-..-...+++..+ ..++++|+-|....|.
T Consensus 873 ~~~~~~~~~~-~~~~~~~~i~l~y~~~~~~~~~~y~Rql~ipl~vtV~~sl 922 (1185)
T PF08626_consen 873 FTVEVDGKPG-PIQLTYADIQLEYGYSGEDSSTFYTRQLSIPLTVTVNPSL 922 (1185)
T ss_pred EEEEecCccc-ccceeeeeEEEEecccCCCCCCCeeEEEEEEEEEEEeceE
Confidence 9999866431 11233333443311 4899999999887663
No 115
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=26.25 E-value=71 Score=30.46 Aligned_cols=37 Identities=32% Similarity=0.224 Sum_probs=19.2
Q ss_pred CchhhHHHHHHHHHHHhhhhhcccccCCCCceEEEEec
Q 004113 1 MKGLVVLFPVLFLFLGSFFGDAAAAQGSKNGVYIVYMG 38 (773)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yIV~l~ 38 (773)
|||+++++++++++++ ..+.++....-+++.|=+..+
T Consensus 1 M~~~~~~~~~~~~~~~-~~~~~a~~~~~kpGlWe~t~~ 37 (162)
T PF12276_consen 1 MKRRLLLALALALLAL-AAAAAAAAPDIKPGLWEVTTT 37 (162)
T ss_pred CchHHHHHHHHHHHHh-hcccccccCCCCCcccEEEEE
Confidence 8888766655555443 333333443445565544333
No 116
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=26.20 E-value=58 Score=24.31 Aligned_cols=9 Identities=11% Similarity=0.062 Sum_probs=4.9
Q ss_pred CchhhHHHH
Q 004113 1 MKGLVVLFP 9 (773)
Q Consensus 1 Mk~~~~~~~ 9 (773)
|||++.+++
T Consensus 2 mKk~i~~i~ 10 (48)
T PRK10081 2 VKKTIAAIF 10 (48)
T ss_pred hHHHHHHHH
Confidence 666655433
No 117
>PRK13203 ureB urease subunit beta; Reviewed
Probab=25.89 E-value=1.5e+02 Score=26.01 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=11.7
Q ss_pred cEEEEEEEEeccCCCC
Q 004113 683 GRTISRTVTNVAGNNE 698 (773)
Q Consensus 683 ~~~~~~tvtn~~~~~~ 698 (773)
..+++++|+|+| +.+
T Consensus 19 r~~~~l~V~NtG-DRP 33 (102)
T PRK13203 19 RETVTLTVANTG-DRP 33 (102)
T ss_pred CCEEEEEEEeCC-CCc
Confidence 456889999999 654
No 118
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=24.08 E-value=1.6e+02 Score=25.80 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=11.6
Q ss_pred cEEEEEEEEeccCCCC
Q 004113 683 GRTISRTVTNVAGNNE 698 (773)
Q Consensus 683 ~~~~~~tvtn~~~~~~ 698 (773)
..+.+++|+|.| +.+
T Consensus 19 r~~~~l~V~NtG-DRP 33 (101)
T TIGR00192 19 RKTVSVKVKNTG-DRP 33 (101)
T ss_pred CcEEEEEEEeCC-Ccc
Confidence 456889999999 654
No 119
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=23.64 E-value=5.1e+02 Score=28.36 Aligned_cols=53 Identities=23% Similarity=0.267 Sum_probs=27.9
Q ss_pred CccEEEEEEEEeccCCCCeE---EE---EEEeCC----------------CCcEEEEecCeEEEccCCcEEEEEEEEEec
Q 004113 681 KEGRTISRTVTNVAGNNETI---YT---VAVDAP----------------QGLNVKVIPEELQFTKSGQKLSYQVTFTSA 738 (773)
Q Consensus 681 ~~~~~~~~tvtn~~~~~~~t---y~---~~~~~~----------------~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 738 (773)
++..+++++|||.| +.+.. |+ +....| .| ++|+|+.-- .+||+++++|+++-.
T Consensus 262 gR~l~~~l~VtN~g-~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~pI--~PGETrtl~V~a~dA 336 (381)
T PF04744_consen 262 GRTLTMTLTVTNNG-DSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNSPI--APGETRTLTVEAQDA 336 (381)
T ss_dssp SSEEEEEEEEEEES-SS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S-B---TT-EEEEEEEEE-H
T ss_pred CcEEEEEEEEEcCC-CCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCCCc--CCCceEEEEEEeehh
Confidence 45788999999999 65532 21 111111 23 344565443 479999999988554
No 120
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=22.74 E-value=79 Score=29.54 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=28.0
Q ss_pred eeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 004113 543 NVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKS 576 (773)
Q Consensus 543 ~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~ 576 (773)
..+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3455666 58999999999999999999999875
No 121
>PRK09810 entericidin A; Provisional
Probab=21.61 E-value=80 Score=22.81 Aligned_cols=8 Identities=63% Similarity=0.879 Sum_probs=4.6
Q ss_pred CchhhHHH
Q 004113 1 MKGLVVLF 8 (773)
Q Consensus 1 Mk~~~~~~ 8 (773)
|||++.++
T Consensus 2 Mkk~~~l~ 9 (41)
T PRK09810 2 MKRLIVLV 9 (41)
T ss_pred hHHHHHHH
Confidence 67765544
No 122
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=21.59 E-value=1.1e+02 Score=25.84 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=7.5
Q ss_pred CchhhHHHHHH
Q 004113 1 MKGLVVLFPVL 11 (773)
Q Consensus 1 Mk~~~~~~~~~ 11 (773)
||++++..+.+
T Consensus 1 MR~~~~aa~a~ 11 (82)
T PF12071_consen 1 MRRLLLAALAL 11 (82)
T ss_pred ChhHHHHHHHH
Confidence 89987655444
No 123
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=21.49 E-value=4.7e+02 Score=22.11 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=23.0
Q ss_pred EEEEEEEEEecc--CCCC-Cc--EEEEEEEECC--ceeEEEEEE
Q 004113 728 KLSYQVTFTSAL--SPLK-ED--VFGSITWSNG--KYKVRSLFV 764 (773)
Q Consensus 728 ~~~~~vt~~~~~--~~~~-~~--~~G~l~~~~~--~~~v~~P~~ 764 (773)
...++|.+...+ +..+ .| ..|.|+|..| ...+++|++
T Consensus 31 ~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~~ge~~k~i~i~i~ 74 (90)
T smart00237 31 RGTVVVPYRTEDGTATAGSDYEPVEGTLTFPPGETEKCIRIKII 74 (90)
T ss_pred CcEEEEEEEEcCCcCCCCCCccccceEEEECCCCEEEEEEEEEe
Confidence 445556665542 2222 33 5799999987 577788875
No 124
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=21.33 E-value=79 Score=24.38 Aligned_cols=37 Identities=27% Similarity=0.484 Sum_probs=22.3
Q ss_pred eeeccccchhhHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 004113 543 NVISGTSMSCPHISGVVA------AIKHQNPTFSPSEIKSAVM 579 (773)
Q Consensus 543 ~~~sGTSmAaP~VAG~aA------Ll~~~~p~ls~~~Ik~~L~ 579 (773)
-.+.||=+..=.|....+ -+.+.||+++.++|+++|.
T Consensus 12 P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 12 PVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp -EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred ceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 355667666555554432 3456799999999999884
No 125
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=21.19 E-value=5.1e+02 Score=21.88 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=35.0
Q ss_pred CCeEEEeccCCCccEEEEEEEEeccCCCCeEEEEEEeC-----CCCcEEEEecCeEEEccCCcEEEEEEEEEec
Q 004113 670 YPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDA-----PQGLNVKVIPEELQFTKSGQKLSYQVTFTSA 738 (773)
Q Consensus 670 ~ps~~~~~~~~~~~~~~~~tvtn~~~~~~~ty~~~~~~-----~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 738 (773)
-+++++.+-.+ +++++|...+ ......++.+.. -+|....-...+++|.+....++++|.+--.
T Consensus 8 ~~~~~V~E~~g----~~~v~V~R~g-~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~~ge~~k~i~i~i~dD 76 (90)
T smart00237 8 QPVYTVSESDG----EVEVCVVRTG-GARGTVVVPYRTEDGTATAGSDYEPVEGTLTFPPGETEKCIRIKIIDD 76 (90)
T ss_pred CCeEEEEECCe----EEEEEEEecC-CCCcEEEEEEEEcCCcCCCCCCccccceEEEECCCCEEEEEEEEEeCC
Confidence 35556654322 4666666666 444455554432 2555555557889995433455555555443
No 126
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=20.91 E-value=96 Score=28.43 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=26.4
Q ss_pred eeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 004113 544 VISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSA 577 (773)
Q Consensus 544 ~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~ 577 (773)
.+.|.|= |+.|-|++||+.+.+-..+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4555554 67999999999999999999999754
No 127
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=20.29 E-value=1.2e+02 Score=27.41 Aligned_cols=41 Identities=12% Similarity=0.027 Sum_probs=20.3
Q ss_pred CchhhHHHHHHHHHHHhhhhhcccccCCCCceEEEEeccCC
Q 004113 1 MKGLVVLFPVLFLFLGSFFGDAAAAQGSKNGVYIVYMGAAA 41 (773)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yIV~l~~~~ 41 (773)
|||.++.++.++++++.+........-..+..|.|+.....
T Consensus 1 mKK~li~li~~ivv~~~~~~~~~~~~~~~~~nyyvki~~~~ 41 (114)
T TIGR01655 1 MKKGLAILLALIVVITIVGIEISHPVYSDRFNYYIKIKNDY 41 (114)
T ss_pred CceehHHHHHHHHhHHHhhheeeccccCCccccEEEEeeCC
Confidence 89987655444433333322222221223457777776554
No 128
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=20.24 E-value=65 Score=26.43 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=10.7
Q ss_pred CchhhHHHHHHHHHHHh
Q 004113 1 MKGLVVLFPVLFLFLGS 17 (773)
Q Consensus 1 Mk~~~~~~~~~~~~~~~ 17 (773)
|||++.+|+++++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (92)
T TIGR02052 1 MKKLATLLALFVLTSLP 17 (92)
T ss_pred ChhHHHHHHHHHHhcch
Confidence 89987666655554433
No 129
>PRK13205 ureB urease subunit beta; Reviewed
Probab=20.24 E-value=2.1e+02 Score=26.98 Aligned_cols=20 Identities=5% Similarity=0.167 Sum_probs=14.4
Q ss_pred cEEEEEEEEeccCCCC----eEEEE
Q 004113 683 GRTISRTVTNVAGNNE----TIYTV 703 (773)
Q Consensus 683 ~~~~~~tvtn~~~~~~----~ty~~ 703 (773)
..+++++|+|+| +.+ +.|++
T Consensus 19 R~~i~L~V~NtG-DRPIQVGSHyHF 42 (162)
T PRK13205 19 REAKTIEIINTG-DRPVQIGSHFHF 42 (162)
T ss_pred CcEEEEEEEeCC-CCceEeccccch
Confidence 456889999999 754 45554
No 130
>PRK13201 ureB urease subunit beta; Reviewed
Probab=20.13 E-value=2.2e+02 Score=26.25 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=11.6
Q ss_pred cEEEEEEEEeccCCCC
Q 004113 683 GRTISRTVTNVAGNNE 698 (773)
Q Consensus 683 ~~~~~~tvtn~~~~~~ 698 (773)
..+++++|+|+| +.+
T Consensus 19 r~~~~l~V~NtG-DRP 33 (136)
T PRK13201 19 HPETVIEVENTG-DRP 33 (136)
T ss_pred CCEEEEEEEeCC-Ccc
Confidence 456889999999 654
No 131
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.05 E-value=90 Score=29.28 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=26.5
Q ss_pred eeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 004113 543 NVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKS 576 (773)
Q Consensus 543 ~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~ 576 (773)
..+.|=| =|++|.|.+|++.+.+-..+|++|.+
T Consensus 72 ~~F~gdS-dA~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 72 LHFFGDS-DARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEEeccc-hhHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 3444544 37899999999999999999999853
Done!