Query 004113
Match_columns 773
No_of_seqs 384 out of 3081
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 14:41:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i6s_A Subtilisin-like proteas 100.0 5E-119 2E-123 1043.4 48.9 625 108-768 1-645 (649)
2 3vta_A Cucumisin; subtilisin-l 100.0 3E-110 1E-114 973.0 52.2 618 108-768 1-620 (621)
3 1xf1_A C5A peptidase, SCP; hyd 100.0 6.5E-81 2.2E-85 754.8 43.0 537 129-769 8-607 (926)
4 3afg_A Subtilisin-like serine 100.0 8E-61 2.7E-65 546.8 31.6 370 28-619 33-419 (539)
5 2z2z_A TK-subtilisin precursor 100.0 1.1E-58 3.9E-63 512.8 21.3 345 30-618 2-392 (395)
6 3t41_A Epidermin leader peptid 100.0 7.5E-56 2.6E-60 502.8 26.3 361 29-619 43-466 (471)
7 1r6v_A Subtilisin-like serine 100.0 2.1E-54 7.3E-59 499.0 26.6 375 27-628 28-449 (671)
8 1y9z_A Alkaline serine proteas 100.0 3.1E-54 1.1E-58 484.1 26.6 382 128-639 14-437 (441)
9 2p4e_P Proprotein convertase s 100.0 3.1E-56 1.1E-60 510.5 6.7 339 31-586 76-423 (692)
10 1dbi_A AK.1 serine protease; h 100.0 4.3E-51 1.5E-55 430.7 25.1 258 129-617 22-279 (280)
11 1gci_A Subtilisin; hydrolase, 100.0 3E-51 1E-55 429.1 23.6 255 129-617 15-269 (269)
12 1r0r_E Subtilisin carlsberg; h 100.0 2E-51 7E-56 432.0 21.4 256 129-617 15-274 (274)
13 1to2_E Subtilisin BPN'; serine 100.0 7.6E-51 2.6E-55 429.0 22.0 258 129-618 15-276 (281)
14 2x8j_A Intracellular subtilisi 100.0 4E-51 1.4E-55 440.3 18.3 263 129-617 32-310 (327)
15 1thm_A Thermitase; hydrolase(s 100.0 3.9E-50 1.3E-54 423.4 25.1 257 129-617 22-278 (279)
16 4h6x_A Thiazoline oxidase/subt 100.0 3.3E-52 1.1E-56 454.5 9.1 302 129-617 22-337 (357)
17 3zxy_A Subtilisin-like protein 100.0 1.2E-50 4E-55 428.9 16.7 266 134-617 3-274 (282)
18 2ixt_A 36KDA protease; serine 100.0 2.7E-49 9.1E-54 424.5 25.3 281 128-612 16-309 (310)
19 2z30_A TK-subtilisin; thermoco 100.0 7.1E-50 2.4E-54 430.1 18.7 264 129-618 19-317 (320)
20 4h6w_A N-terminal cyanobactin 100.0 3E-50 1E-54 431.3 14.6 271 129-617 12-287 (306)
21 2iy9_A SUBA; toxin, shiga, pla 100.0 2.1E-49 7.3E-54 431.8 15.2 269 129-618 34-329 (347)
22 1sh7_A Extracellular subtilisi 100.0 7.1E-48 2.4E-52 406.4 25.3 251 114-587 5-258 (284)
23 1wmd_A Protease; alpha-beta hy 100.0 3.6E-48 1.2E-52 434.4 21.5 291 129-619 12-319 (434)
24 3lxu_X Tripeptidyl-peptidase 2 100.0 2.5E-47 8.6E-52 457.0 29.7 408 139-767 214-652 (1354)
25 3lpc_A APRB2; protease, subtil 100.0 4.3E-48 1.5E-52 420.6 18.7 289 129-618 23-337 (340)
26 2b6n_A Proteinase K; S binding 100.0 3.4E-47 1.2E-51 400.7 23.1 252 114-586 7-261 (278)
27 4dzt_A Aqualysin-1, aqualysin- 100.0 4.2E-47 1.4E-51 400.2 23.3 254 112-588 5-261 (276)
28 2pwa_A Proteinase K; structure 100.0 8.3E-47 2.9E-51 397.2 19.8 241 130-613 24-272 (279)
29 2oxa_A Extracellular serine pr 100.0 1.8E-46 6.2E-51 436.5 20.8 299 127-623 59-430 (600)
30 1p8j_A Furin precursor; prohor 100.0 3.4E-46 1.2E-50 421.9 20.3 297 125-620 25-332 (471)
31 2id4_A Kexin; KEX2, kexin, fur 100.0 1.8E-45 6E-50 418.8 19.1 287 127-620 43-344 (503)
32 2qtw_B Proprotein convertase s 100.0 6.3E-45 2.2E-49 406.8 21.9 291 115-617 4-313 (546)
33 3f7m_A Alkaline serine proteas 100.0 5.7E-45 1.9E-49 384.6 18.4 232 129-588 24-263 (279)
34 3hjr_A Extracellular serine pr 100.0 3.1E-43 1.1E-47 411.0 25.7 320 127-621 59-428 (600)
35 1t1e_A Kumamolisin; proenzyme, 99.9 4E-25 1.4E-29 251.8 6.9 101 236-341 272-383 (552)
36 1ga6_A Serine-carboxyl protein 99.8 3.5E-21 1.2E-25 209.1 10.0 103 239-342 90-207 (372)
37 3edy_A Tripeptidyl-peptidase 1 99.0 4.7E-10 1.6E-14 126.9 9.0 101 239-341 262-374 (544)
38 2w2n_P Proprotein convertase s 98.9 1.2E-09 4E-14 97.6 5.7 78 27-106 34-113 (114)
39 3cnq_P Subtilisin BPN'; unclea 98.9 4.4E-09 1.5E-13 87.8 8.5 75 27-110 5-79 (80)
40 2qtw_A Proprotein convertase s 98.7 2.7E-08 9.2E-13 89.8 6.4 77 28-106 45-123 (124)
41 1v5i_B POIA1, IA-1=serine prot 98.5 3.2E-07 1.1E-11 75.4 7.7 70 31-106 3-75 (76)
42 3icu_A E3 ubiquitin-protein li 98.2 4.9E-06 1.7E-10 80.5 10.2 92 391-483 83-187 (194)
43 2z30_B TK-subtilisin; thermoco 97.7 3.9E-05 1.3E-09 60.7 4.9 62 31-105 2-63 (65)
44 2ek8_A Aminopeptidase; metallo 95.1 0.048 1.6E-06 59.9 9.0 70 399-470 108-182 (421)
45 2ys4_A Hydrocephalus-inducing 94.5 0.12 4.2E-06 46.0 8.5 73 682-763 41-114 (122)
46 3iib_A Peptidase M28; YP_92679 93.6 0.14 4.7E-06 56.6 8.5 82 401-482 124-226 (444)
47 3fed_A Glutamate carboxypeptid 92.9 0.091 3.1E-06 61.1 5.7 69 401-471 150-268 (707)
48 3qbt_B Inositol polyphosphate 92.8 1.1 3.9E-05 40.6 11.8 87 682-770 43-140 (140)
49 3kas_A Transferrin receptor pr 90.1 0.3 1E-05 56.1 6.1 67 402-470 128-230 (640)
50 2e6j_A Hydin protein; PAPD, st 88.1 0.75 2.6E-05 39.8 5.9 81 668-753 12-93 (112)
51 1y9z_A Alkaline serine proteas 86.2 0.49 1.7E-05 52.1 4.4 31 489-527 181-211 (441)
52 3lxu_X Tripeptidyl-peptidase 2 86.0 0.35 1.2E-05 59.5 3.2 24 134-157 32-55 (1354)
53 2qsv_A Uncharacterized protein 85.1 4 0.00014 40.0 10.1 86 678-768 15-106 (220)
54 3qis_A Inositol polyphosphate 82.8 15 0.00053 38.9 14.1 88 681-770 45-143 (366)
55 2r39_A FIXG-related protein; s 82.8 6 0.00021 34.5 9.1 53 684-739 33-85 (118)
56 3idu_A Uncharacterized protein 66.2 20 0.00068 31.7 7.9 53 681-737 32-84 (127)
57 2qsv_A Uncharacterized protein 64.4 32 0.0011 33.4 10.0 87 671-764 124-217 (220)
58 3zyz_A Beta-D-glucoside glucoh 55.3 24 0.00083 40.9 8.3 55 683-739 614-675 (713)
59 2x41_A Beta-glucosidase; hydro 51.8 25 0.00087 40.9 7.8 75 664-739 594-678 (721)
60 1z9l_A Vesicle-associated memb 49.5 71 0.0024 27.9 8.7 52 683-738 28-79 (128)
61 1w8o_A Bacterial sialidase; 3D 46.9 1.1E+02 0.0038 34.3 12.2 80 669-755 363-443 (601)
62 1wic_A Hypothetical protein ri 46.9 45 0.0015 30.3 7.1 52 683-738 36-87 (152)
63 1m1s_A WR4; structural genomic 46.1 98 0.0033 26.7 8.7 51 685-739 26-76 (116)
64 1msp_A MSP, major sperm protei 45.7 57 0.002 28.6 7.4 52 683-738 26-77 (126)
65 1row_A SSP-19, MSP-domain prot 43.9 79 0.0027 26.9 7.8 50 685-738 18-67 (109)
66 2cri_A Vesicle-associated memb 40.5 88 0.003 28.1 8.0 52 683-738 32-83 (147)
67 1wgl_A TOLL-interacting protei 38.1 22 0.00076 26.8 2.9 38 548-585 2-39 (59)
68 3abz_A Beta-glucosidase I; gly 37.7 89 0.003 36.9 9.5 165 541-738 618-798 (845)
69 2kq1_A BH0266 protein; solutio 36.2 9.1 0.00031 33.4 0.6 51 685-738 56-110 (119)
70 3isy_A Bsupi, intracellular pr 33.4 1.9E+02 0.0066 25.0 8.6 67 682-751 18-102 (120)
71 3sd2_A Putative member of DUF3 31.8 2.1E+02 0.0072 23.9 8.1 66 672-752 35-100 (101)
72 3e9t_A Na/Ca exchange protein; 26.4 1.6E+02 0.0056 25.0 7.0 54 711-764 3-75 (114)
73 1ni7_A ER75, hypothetical prot 24.0 54 0.0019 30.0 3.5 33 544-577 78-110 (155)
74 2l0d_A Cell surface protein; s 23.5 2.1E+02 0.0072 24.5 7.0 25 681-706 18-43 (114)
75 3rfr_A PMOB; membrane, oxidore 21.7 3.6E+02 0.012 28.3 9.4 51 681-738 297-369 (419)
76 3q48_A Chaperone CUPB2; IG fol 20.5 5.4E+02 0.018 25.3 10.4 52 683-738 43-104 (257)
77 3g0m_A Cysteine desulfuration 20.2 52 0.0018 29.6 2.5 33 543-576 70-102 (141)
No 1
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=100.00 E-value=4.5e-119 Score=1043.39 Aligned_cols=625 Identities=37% Similarity=0.591 Sum_probs=563.4
Q ss_pred cccCccccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCcee
Q 004113 108 TTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKI 187 (773)
Q Consensus 108 ~~~~~~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki 187 (773)
++++|+|+||+... .+|..+.+|+||+|||||||||++||+|.+.+++|+|.+|+|.|+.+.+|+...||+|+
T Consensus 1 Tt~s~~flgl~~~~-------~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~ki 73 (649)
T 3i6s_A 1 TTHTSDFLKLNPSS-------GLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKL 73 (649)
T ss_dssp CCSHHHHTTCCSSS-------SHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSE
T ss_pred CCCChHHcCCCCch-------hhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccce
Confidence 46899999998533 69999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeeeeccccccc-----cCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHH
Q 004113 188 IGARFYDIEDDV-----VANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGS 262 (773)
Q Consensus 188 ~~~~~~~~~~~~-----~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~ 262 (773)
++.++|.+++.. ..+..++.|..||||||||||||+..++.+++|++.+.+.||||+|+|++||+|+.. ++..+
T Consensus 74 ig~~~f~~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g~~~~ 152 (649)
T 3i6s_A 74 IGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE-GTFTS 152 (649)
T ss_dssp EEEEECCHHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETT-EECHH
T ss_pred eeeEeccCcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCC-CCCHH
Confidence 999999865431 124457889999999999999999999999999999999999999999999999988 58999
Q ss_pred HHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccC
Q 004113 263 NILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTID 342 (773)
Q Consensus 263 ~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~ 342 (773)
++++||+||+++|+||||||||... ..+..+++.+++++|.++|++||+||||+|+...++++.+||+|+|||++.|
T Consensus 153 ~i~~Ai~~A~~~gvdVIn~SlG~~~---~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~d 229 (649)
T 3i6s_A 153 DLIAAMDQAVADGVDMISISYGYRF---IPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTD 229 (649)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCS---CCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECS
T ss_pred HHHHHHHHHHHcCCCEEEeCCccCC---cccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecc
Confidence 9999999999999999999999875 5778899999999999999999999999999999999999999999999999
Q ss_pred cceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccc--cceEEEEecCCCCCch
Q 004113 343 RDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALV--KGKIVLCDNDDDMGSV 420 (773)
Q Consensus 343 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gki~l~~~~~~~~~~ 420 (773)
|.|...+.+++++++.|.+++..... ...+|++|.. ....|.+..+++.++ +|||++|+|+. +.+
T Consensus 230 r~f~~~~~lgng~~~~g~sl~~~~~~-~~~~plv~~~----------~~~~C~~~~l~~~~vdl~GkIvlc~~g~--~~~ 296 (649)
T 3i6s_A 230 RTFAGTLTLGNGLKIRGWSLFPARAF-VRDSPVIYNK----------TLSDCSSEELLSQVENPENTIVICDDNG--DFS 296 (649)
T ss_dssp CEEEEEEEETTSCEEEEECCCSSCBC-EEEEEEECCT----------TTTTCCCHHHHTTSSSGGGCEEEECCCS--CHH
T ss_pred cceeeEEEeCCCcEEeeeecccCccc-CcceeeEecc----------cccccccccccccccccCCcEEEEeCCC--ccH
Confidence 99999999999999999999876543 6789999865 246799998888877 99999999964 679
Q ss_pred hhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCC
Q 004113 421 VDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSAR 500 (773)
Q Consensus 421 ~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~ 500 (773)
.+|..+++.+|+.|+|++|+. .....+.+.+|+++++.++++.|+.|++++.+++++|.+..+..+..+.+.++.||||
T Consensus 297 ~~k~~~~~~~Ga~g~i~~n~~-~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSr 375 (649)
T 3i6s_A 297 DQMRIITRARLKAAIFISEDP-GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSAR 375 (649)
T ss_dssp HHHHHHHHHTCSEEEEECCCG-GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCC
T ss_pred HHHHHHHHhcCceEEEEecCc-cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCC
Confidence 999999999999999999988 4566678899999999999999999999999999999999999888899999999999
Q ss_pred CCCCCCCCCccCceEeCCccEEeeecCCCCCCCC-CCC-CCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHH
Q 004113 501 GPSPLTRNILKPDITAPGVNILAAWMGNDTGEAP-EGK-EPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAV 578 (773)
Q Consensus 501 Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~-~~~-~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L 578 (773)
||+...+++|||||+|||++|+++++........ .+. +...|..+||||||||||||++|||||+||+|+|++||++|
T Consensus 376 GP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaL 455 (649)
T 3i6s_A 376 GPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAM 455 (649)
T ss_dssp SSCTTCTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred CCCCCCCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 9999878999999999999999999875433322 111 34789999999999999999999999999999999999999
Q ss_pred HhcccccCCCCCccccC-CCCCCCCCCCCcccccccccCCCceeecCCchhhhccccccCCCcceeeeeeccCCCCcc--
Q 004113 579 MTTATQTNNLRAPITTN-SGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFA-- 655 (773)
Q Consensus 579 ~~TA~~~~~~g~~~~~~-~~~~~~~~~~G~G~id~~~A~~~~lv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-- 655 (773)
|+||.+++..+.++.+. .+.++.++.||+|+||+.+|++||||||++.+||++|||.+||+..+|+.+++ .+++
T Consensus 456 mtTA~~~~~~g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~---~~~~~~ 532 (649)
T 3i6s_A 456 MTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIAR---SSASHN 532 (649)
T ss_dssp HHTCBCBCTTSSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHT---TTSCC-
T ss_pred hcccccccCCCCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeec---CCCcCC
Confidence 99999999999888875 45678899999999999999999999999999999999999999999999998 5667
Q ss_pred CCCCCCCCCCCCCCCCeEEEec-cCCCcc-----EEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEE
Q 004113 656 CPKDSGVDSISNINYPSIAVSS-FDGKEG-----RTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKL 729 (773)
Q Consensus 656 ~~~~~~~~~~~~ln~ps~~~~~-~~~~~~-----~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~ 729 (773)
|+. ...+||||||++.. +.+ . ++|+||||||| +..++|+++++.|.|++|+|+|++|+|.+.+|++
T Consensus 533 C~~-----~~~~lNyPs~~~~~~~~~--~~~~~~~~~~Rtvtnvg-~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~ 604 (649)
T 3i6s_A 533 CSN-----PSADLNYPSFIALYSIEG--NFTLLEQKFKRTVTNVG-KGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQ 604 (649)
T ss_dssp CCC-----CCCCCCCSSEEEEECCSS--CCCCEEEEEEEEEEECC---CEEEEEEEECCTTEEEEEESSEEEECC-CCEE
T ss_pred CCC-----chhhcCCCcEEeecccCC--CCccceEEEEEEEEEeC-CCCcEEEEEEecCCCCEEEEECCEEEEecCCCEE
Confidence 975 34799999999986 454 4 89999999999 8889999999999999999999999998899999
Q ss_pred EEEEEEEeccCCCCCcEEEEEEEEC--CceeEEEEEEEEee
Q 004113 730 SYQVTFTSALSPLKEDVFGSITWSN--GKYKVRSLFVVSSK 768 (773)
Q Consensus 730 ~~~vt~~~~~~~~~~~~~G~l~~~~--~~~~v~~P~~~~~~ 768 (773)
+|+|||+......+.|.||+|+|++ +.|.||+||+|+..
T Consensus 605 ~f~v~~~~~~~~~~~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 605 SYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EEEEEEEECCC---CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred EEEEEEEecccCCCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 9999999876556789999999999 89999999999876
No 2
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=100.00 E-value=3.2e-110 Score=973.01 Aligned_cols=618 Identities=41% Similarity=0.704 Sum_probs=522.9
Q ss_pred cccCccccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCcee
Q 004113 108 TTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKI 187 (773)
Q Consensus 108 ~~~~~~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki 187 (773)
++++|+|+||+. .+|.+..+|+||+|||||||||++||+|.++++++++.+|+|.|+.+.+| .||+|+
T Consensus 1 tt~s~~flGl~~---------~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~---~~n~k~ 68 (621)
T 3vta_A 1 TTRSWDFLGFPL---------TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNF---RCNRKI 68 (621)
T ss_dssp CCSHHHHTTCCT---------TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSC---CCCSSE
T ss_pred CCCChhHcCCCc---------cccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCc---ccCcce
Confidence 478999999975 48888999999999999999999999999999999999999999999887 599999
Q ss_pred Eeeeecccccccc-CCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHH
Q 004113 188 IGARFYDIEDDVV-ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266 (773)
Q Consensus 188 ~~~~~~~~~~~~~-~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ 266 (773)
+++++|..+.... .+..+++|..||||||||||||+..++.+.+|++.+.++||||+|+|++||+|++. +|..+++++
T Consensus 69 ig~~~~~~~~~~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-g~~~~di~~ 147 (621)
T 3vta_A 69 IGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWND-GCSDTDILA 147 (621)
T ss_dssp EEEEECCCSSSCCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETT-EECHHHHHH
T ss_pred eeeeecccCCccCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCC-CCCHHHHHH
Confidence 9999998775532 45567889999999999999999988888888888899999999999999999988 688999999
Q ss_pred HHHHHhhCCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCccee
Q 004113 267 AFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFE 346 (773)
Q Consensus 267 ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~ 346 (773)
||++|+++|+||||||||+... ..+..+++++++++|.++||++|+||||+|+...++++.+||+++|++++.++.+.
T Consensus 148 a~~~a~~~g~dVin~SlG~~~~--~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~ 225 (621)
T 3vta_A 148 AYDDAIADGVDIISLSVGGANP--RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFV 225 (621)
T ss_dssp HHHHHHHHTCSEEEECCCCCCG--GGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEE
T ss_pred HHHHHHHhCCCEEEecCCCCCC--CCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccce
Confidence 9999999999999999998764 56677899999999999999999999999999999999999999999999999999
Q ss_pred eEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcc
Q 004113 347 SDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDG 426 (773)
Q Consensus 347 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~ 426 (773)
..+.++++..+.+.++.... ...+++++................|....+++.+++|||++|+++ +..+..+
T Consensus 226 ~~~~~~~~~~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~-----~~~~~~~ 297 (621)
T 3vta_A 226 TQVQIGNGQSFQGVSINTFD---NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEAS-----FGPHEFF 297 (621)
T ss_dssp EEEEETTSCEEEEBCCCCSC---CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSC-----CCHHHHH
T ss_pred eeEEeccCceeeeeecccCC---CcccccccccccccccccccccccccccccccccccceEEEEecC-----CChhHHh
Confidence 99999999999988876433 567888888777666666677888999999999999999999874 3456667
Q ss_pred cccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCC
Q 004113 427 VKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLT 506 (773)
Q Consensus 427 ~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 506 (773)
....|+.++|++++... ..+.+.+|...++..++..++.|+.....+.+++....+. .....+.++.||||||+...
T Consensus 298 ~~~~Ga~gvi~~~~~~~--~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~-~~~~~~~va~FSSrGP~~~~ 374 (621)
T 3vta_A 298 KSLDGAAGVLMTSNTRD--YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI-LNASAPVVVSFSSRGPNRAT 374 (621)
T ss_dssp HHHTTCSEEEEECSCCS--SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEE-ECTTCCCBCTTSCCCSCTTC
T ss_pred hhhcceeEEEEEecCCC--cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEe-ccCCCCceeeecCCCCCCCC
Confidence 78889999999988653 3456789999999999999999999999998888665554 34568899999999999877
Q ss_pred CCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccC
Q 004113 507 RNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTN 586 (773)
Q Consensus 507 d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~ 586 (773)
++++||||+|||++|+|+++...... .......|..+||||||||||||++|||||+||+|+|++||++||+||++++
T Consensus 375 ~~ilKPDI~APG~~Ilsa~~~~~~~~--~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~ 452 (621)
T 3vta_A 375 KDVIKPDISGPGVEILAAWPSVAPVG--GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN 452 (621)
T ss_dssp TTSCSCCEEEECSSEEEECCSSSCBT--TBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCC
T ss_pred CCeeccccccCCcceEeecCcccccc--CcCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCccc
Confidence 89999999999999999998643322 2234478999999999999999999999999999999999999999999887
Q ss_pred CCCCccccCCCCCCCCCCCCcccccccccCCCceeecCCchhhhccccccCCCcceeeeeeccCCCCccCCCCCCCCCCC
Q 004113 587 NLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSIS 666 (773)
Q Consensus 587 ~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~~lv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (773)
..+. ++.+++||+|+||+.+|++||||||+..+||+.|||.+||+..+++.+++ ....|+.... ....
T Consensus 453 ~~~~--------~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~ 520 (621)
T 3vta_A 453 ARFN--------PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITG---DYSACTSGNT-GRVW 520 (621)
T ss_dssp TTTC--------TTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC---------------------------------CGG
T ss_pred ccCC--------CCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeec---cccccCCCCc-Cccc
Confidence 6543 34788999999999999999999999999999999999999999999998 6678875432 3567
Q ss_pred CCCCCeEEEeccCC-CccEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCc
Q 004113 667 NINYPSIAVSSFDG-KEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKED 745 (773)
Q Consensus 667 ~ln~ps~~~~~~~~-~~~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~ 745 (773)
+||||||++..... ..+++|+||||||+ +.+.||+++++.|+|++|+|+|++|+|++.+|+++|+|||+.. .++.|
T Consensus 521 ~lN~pS~~v~~~~~~~~~~t~~rtvtnvg-~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~--~~~~~ 597 (621)
T 3vta_A 521 DLNYPSFGLSVSPSQTFNQYFNRTLTSVA-PQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS--IKGFV 597 (621)
T ss_dssp GSCCSSEEEECCSSCCEEEEEEEEEEECS-SSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC--CCSSE
T ss_pred ccccccEEEEccCCCceEEEEEEEEEccC-CCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec--CCCce
Confidence 99999999962222 23789999999999 8999999999999999999999999999899999999999874 67889
Q ss_pred EEEEEEEECCceeEEEEEEEEee
Q 004113 746 VFGSITWSNGKYKVRSLFVVSSK 768 (773)
Q Consensus 746 ~~G~l~~~~~~~~v~~P~~~~~~ 768 (773)
+||+|+|+||.|.||+||+|+..
T Consensus 598 ~~g~l~w~d~~h~Vr~Pi~v~~~ 620 (621)
T 3vta_A 598 VSASLVWSDGVHYVRSPITITSL 620 (621)
T ss_dssp EEEEEEEECSSCCCEEEEEEECC
T ss_pred EEEEEEEEcCCEEEEeCEEEEEe
Confidence 99999999999999999999864
No 3
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=100.00 E-value=6.5e-81 Score=754.80 Aligned_cols=537 Identities=23% Similarity=0.282 Sum_probs=424.7
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCC----------CcccCCceeEeeeecccccc
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDN----------VSFSCNRKIIGARFYDIEDD 198 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f----------~~~~~n~ki~~~~~~~~~~~ 198 (773)
.+|..+.+|+||+|||||||||++||+|.+. ..|++.|..+..| ...+||+|++++++|.++.
T Consensus 8 ~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~~- 80 (926)
T 1xf1_A 8 TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDG- 80 (926)
T ss_dssp HHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCCS-
T ss_pred HHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccCC-
Confidence 5898899999999999999999999999853 4666666432221 2347999999999997653
Q ss_pred ccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCC-CCHHHHHHHHHHHhhCCCc
Q 004113 199 VVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYG-CTGSNILAAFDDAIADGVD 277 (773)
Q Consensus 199 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~-~~~~~i~~ai~~a~~~g~d 277 (773)
...|..||||||||||||+...+.+. ++.+.||||+|+|+++|+|+..+. +...++++||++|+++|+|
T Consensus 81 ------~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~~Ai~~gvd 150 (926)
T 1xf1_A 81 ------KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAK 150 (926)
T ss_dssp ------CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred ------CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHhCCc
Confidence 23389999999999999987554331 355799999999999999987632 4567899999999999999
Q ss_pred EEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCC-------------CCCcccC--CCcEEEEcccccC
Q 004113 278 VLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPS-------------SGSVVNF--APWIFTVAASTID 342 (773)
Q Consensus 278 VIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~-------------~~~~~~~--~p~vitVga~~~~ 342 (773)
|||||||..... ...+.+.++.++++|.++|++||+||||+|+. ..++.++ +||+|+|||++.+
T Consensus 151 VIn~SlG~~~~~-~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA~~~~ 229 (926)
T 1xf1_A 151 VINMSFGNAALA-YANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPD 229 (926)
T ss_dssp EEEECCSSCCCT-TCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEEEBCS
T ss_pred EEEECCCCCCCC-ccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEeccccc
Confidence 999999986421 24456788889999999999999999999963 2233443 7999999999999
Q ss_pred cceeeEEEE-CCceEEeeeeeccC-CCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCch
Q 004113 343 RDFESDIVL-GGNKVIKGESINFS-NLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSV 420 (773)
Q Consensus 343 ~~~~~~~~~-g~~~~~~g~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~ 420 (773)
+.+...+.+ +++....+.++... .++....||+++... .|....+ .+++|||++|+|+. |.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~------------g~~~~~~--~~v~Gkivl~~rg~--~~~ 293 (926)
T 1xf1_A 230 KQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR------------GTKEDDF--KDVKGKIALIERGD--IDF 293 (926)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT------------SCSTTTT--TTCTTSEEEEECCS--SCH
T ss_pred cccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC------------CCCccch--hhcCCeEEEEECCC--CCH
Confidence 999888887 55554445544432 233567899999765 3776665 68999999999964 679
Q ss_pred hhhhcccccCCceEEEEEeCCCcc---ccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCee--eecccCCCccc
Q 004113 421 VDKKDGVKSLGGVGVIVIDDQSRA---VASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVS--VTKYKPAPAIA 495 (773)
Q Consensus 421 ~~k~~~~~~~Ga~g~i~~~~~~~~---~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~a 495 (773)
.+|..+++.+||.|+|++++.... .......+|+..++..++..|+. . +..++.+..+ .......+.++
T Consensus 294 ~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~--~~~ti~~~~~~~~~~~~~~~~~a 367 (926)
T 1xf1_A 294 KDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----N--PQKTITFNATPKVLPTASGTKLS 367 (926)
T ss_dssp HHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----C--SSCEEEECSSCEEEECSSCSBCC
T ss_pred HHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----C--CceEEEecccceecccCCcceec
Confidence 999999999999999999987532 13456789999999999998874 3 3344444443 34455678999
Q ss_pred cccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHH----hhCCCCCH
Q 004113 496 YFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIK----HQNPTFSP 571 (773)
Q Consensus 496 ~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----~~~p~ls~ 571 (773)
.||||||+. ++++||||+|||++|+++++. +.|..+||||||||||||++|||+ +.||+|+|
T Consensus 368 ~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~------------~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp 433 (926)
T 1xf1_A 368 RFSSWGLTA--DGNIKPDIAAPGQDILSSVAN------------NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTP 433 (926)
T ss_dssp TTSCCCBCT--TSCBSCCEEEECCCEEESSSC------------SSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHH
T ss_pred cccCCCCCC--CCccCceEECCCCCEEeeccC------------CcceecCccchhHHHHHHHHHHHHHHHhccCCCCCH
Confidence 999999996 799999999999999999987 789999999999999999999996 46999999
Q ss_pred HH----HHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCCCceeecCCchhhhccccccCCCcceeeeee
Q 004113 572 SE----IKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIA 647 (773)
Q Consensus 572 ~~----Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~~lv~~~~~~~~~~~~~~~g~~~~~~~~~~ 647 (773)
++ ||++||+||+++...+ ....+++++||+|+||+.+|+++.+ |+|..+++..
T Consensus 434 ~~~~~~Iks~L~~TA~~~~~~~------~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~------ 490 (926)
T 1xf1_A 434 SERLDLAKKVLMSSATALYDED------EKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS------ 490 (926)
T ss_dssp HHHHHHHHHHHHHHSBCCEEGG------GTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS------
T ss_pred HHHHHHHHHHHHhcCCCcccCC------CCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc------
Confidence 97 9999999999876532 1224578899999999999999854 6776654322
Q ss_pred ccCCCCccCCCCCCCCCCCCCCCCeEEEeccCCCccEEEEEEEEeccCCCC--eEEEEEEeC--CCCcEEEEecCeEEEc
Q 004113 648 TTIPKDFACPKDSGVDSISNINYPSIAVSSFDGKEGRTISRTVTNVAGNNE--TIYTVAVDA--PQGLNVKVIPEELQFT 723 (773)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~~tvtn~~~~~~--~ty~~~~~~--~~g~~v~v~p~~~~~~ 723 (773)
++.+.++.. ..+++|||||+| +.+ .+|++++.. |.+..++|+|..|.|.
T Consensus 491 ------------------------~i~l~~~~~--~~~~~~tv~N~g-~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~ 543 (926)
T 1xf1_A 491 ------------------------KVHLNNVSD--KFEVTVNVHNKS-DKPQELYYQATVQTDKVDGKHFALAPKVLYET 543 (926)
T ss_dssp ------------------------CEEEEEECS--EEEEEEEEEECS-SSCEEEEEEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ------------------------eeeccccCc--cEEEEEEEEEeC-CCceeEEEEEEEEeccCCCceEEeccceeEec
Confidence 233444555 788999999999 643 567777765 6788999988877664
Q ss_pred c-------CCcEEEEEEEEEecc--------CCCCCcEEEEEEEE--CCce-eEEEEEEEEeeC
Q 004113 724 K-------SGQKLSYQVTFTSAL--------SPLKEDVFGSITWS--NGKY-KVRSLFVVSSKS 769 (773)
Q Consensus 724 ~-------~~~~~~~~vt~~~~~--------~~~~~~~~G~l~~~--~~~~-~v~~P~~~~~~~ 769 (773)
. +||+++|+|||+... .+++.|+||+|+|+ ++.| .||+||+++..+
T Consensus 544 ~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~g~ 607 (926)
T 1xf1_A 544 SWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFRGD 607 (926)
T ss_dssp CCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEESC
T ss_pred cCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEecC
Confidence 4 499999999999851 24567899999999 4555 499999998765
No 4
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}
Probab=100.00 E-value=8e-61 Score=546.82 Aligned_cols=370 Identities=26% Similarity=0.397 Sum_probs=291.9
Q ss_pred CCCceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEecceeeEEEEEcCHHHHHHH-----------hCCCCeE
Q 004113 28 SKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHAL-----------SKKPGVV 96 (773)
Q Consensus 28 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~~~i~~L-----------~~~p~V~ 96 (773)
.++.+|||.|++.. . .. .+.+.++..+.+++++|+ .|+||+++++.+++++| +++|+|+
T Consensus 33 ~~~~~~iV~~~~~~-~----~~----~~~~~~~~~g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~ 102 (539)
T 3afg_A 33 DQEVSTIIMFDNQA-D----KE----KAVEILDFLGAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQ 102 (539)
T ss_dssp TCEEEEEEEESSHH-H----HH----HHHHHHHHHTCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEE
T ss_pred cCceEEEEEECCCC-C----HH----HHHHHHHhcCCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCee
Confidence 34567999999766 2 11 222233333578999997 49999999999999999 8999999
Q ss_pred EEecCceeccccccCccccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCC
Q 004113 97 SIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGN 176 (773)
Q Consensus 97 ~V~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~ 176 (773)
+|++++.+++.... .+++.. ...+....+|..+++|+||+|||||||||++||+|.+
T Consensus 103 ~v~~d~~~~~~~~~----~~~~~~-~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~------------------ 159 (539)
T 3afg_A 103 FIQEDYVVKVAVET----EGLDES-AAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG------------------ 159 (539)
T ss_dssp EEEECCEEECC----------------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTT------------------
T ss_pred EEEecccccccCcc----ccCCcc-ccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhC------------------
Confidence 99999988764321 122111 0112334799999999999999999999999999963
Q ss_pred CCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC
Q 004113 177 DNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE 256 (773)
Q Consensus 177 ~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~ 256 (773)
++++.++|.++. ..+.|..||||||||||+|+..+ ..+.+.||||+|+|+.+|+++..
T Consensus 160 ---------~i~~~~d~~~~~------~~~~D~~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~~~ 217 (539)
T 3afg_A 160 ---------KVIGWVDFVNGK------TTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQ 217 (539)
T ss_dssp ---------TEEEEEETTTCC------SSCCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSCTT
T ss_pred ---------CEeeeEECCCCC------CCCCCCCCCHHHHHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeecCC
Confidence 455666665442 45678999999999999997533 12346899999999999999987
Q ss_pred CCCCHHHHHHHHHHHhhC----CCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC--cccCC
Q 004113 257 YGCTGSNILAAFDDAIAD----GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGS--VVNFA 330 (773)
Q Consensus 257 g~~~~~~i~~ai~~a~~~----g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~--~~~~~ 330 (773)
+.+..+++++||+||+++ |++|||||||... .....+.+..+++++.++|++||+||||+|+...+ .+...
T Consensus 218 g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~---~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~ 294 (539)
T 3afg_A 218 GSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQ---SSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAA 294 (539)
T ss_dssp SEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCS---CCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTC
T ss_pred CCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCC---CCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccC
Confidence 667889999999999976 8999999999876 34456888899999999999999999999976544 34556
Q ss_pred CcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEE
Q 004113 331 PWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVL 410 (773)
Q Consensus 331 p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l 410 (773)
+++|+|||++.
T Consensus 295 ~~vitVgA~~~--------------------------------------------------------------------- 305 (539)
T 3afg_A 295 SKVITVGAVDK--------------------------------------------------------------------- 305 (539)
T ss_dssp SSSEEEEEECT---------------------------------------------------------------------
T ss_pred CceEEEeeecC---------------------------------------------------------------------
Confidence 89999998532
Q ss_pred EecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccC
Q 004113 411 CDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKP 490 (773)
Q Consensus 411 ~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~ 490 (773)
T Consensus 306 -------------------------------------------------------------------------------- 305 (539)
T 3afg_A 306 -------------------------------------------------------------------------------- 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCC
Q 004113 491 APAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFS 570 (773)
Q Consensus 491 ~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls 570 (773)
.+.++.||||||+. ++++||||+|||++|+++++..... .+.....|..++|||||||||||++|||+|++|+|+
T Consensus 306 ~~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s 380 (539)
T 3afg_A 306 YDVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSM---GQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWT 380 (539)
T ss_dssp TSCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCC---SEECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CcccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCC---CCCCcccccccCchHHHHHHHHHHHHHHHHHCCCCC
Confidence 13688999999987 6999999999999999998652210 011113699999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCCCc
Q 004113 571 PSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPG 619 (773)
Q Consensus 571 ~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~~ 619 (773)
+++||++|++||+++...+ .+++.||+|+||+.+|++..
T Consensus 381 ~~~vk~~L~~tA~~~~~~~----------~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 381 PDKVKTALIETADIVKPDE----------IADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp HHHHHHHHHHHSBCSSGGG----------CSBTTTBTCBCCHHHHHTGG
T ss_pred HHHHHHHHHhhCccCCCCC----------CCccCccCCccCHHHHhhhc
Confidence 9999999999999876432 25678999999999999953
No 5
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A
Probab=100.00 E-value=1.1e-58 Score=512.77 Aligned_cols=345 Identities=27% Similarity=0.315 Sum_probs=279.5
Q ss_pred CceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEecCceeccccc
Q 004113 30 NGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQLHTT 109 (773)
Q Consensus 30 ~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~~V~~~~~~~~~~~ 109 (773)
+.+|||+|++.. . .++++++.+.+++++|.. +++|+++++++++++|+++|+|++|++++.++++..
T Consensus 2 ~~~~iV~~~~~~-~-----------~~~~~~~~g~~v~~~~~~-~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~ 68 (395)
T 2z2z_A 2 TIRVIVSVDKAK-F-----------NPHEVLGIGGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGK 68 (395)
T ss_dssp EEEEEEEECTTT-C-----------CHHHHHHTTCEEEEECSS-SSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCE
T ss_pred cEEEEEEECCCc-c-----------HHHHHHHcCCEEEEEecc-CCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCC
Confidence 568999999876 2 122334446789999986 999999999999999999999999999998876533
Q ss_pred cCc-----------cccCcccccccCCCCCCCCCCCCCCCC--cEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCC
Q 004113 110 RSW-----------DFLKIQTDVLIDSVPSPSLNSQDQESD--TIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGN 176 (773)
Q Consensus 110 ~~~-----------~~~gl~~~~~~~~~~~~~~~~~~~G~G--v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~ 176 (773)
..+ ..|++.. +....+|..+ +|+| |+|||||||||++||+|.++
T Consensus 69 ~~~~~~~~~~~~~~~~w~~~~-----i~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~----------------- 125 (395)
T 2z2z_A 69 PSWLGGGSTQPAQTIPWGIER-----VKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN----------------- 125 (395)
T ss_dssp ECC------CCSCCCCHHHHH-----TTCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG-----------------
T ss_pred CCcccccccCccccCCcchhh-----cCHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc-----------------
Confidence 221 1233322 1233689888 9999 99999999999999999742
Q ss_pred CCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC
Q 004113 177 DNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE 256 (773)
Q Consensus 177 ~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~ 256 (773)
+...++|..+... .+.....|..||||||||||+|.. + +..+.||||+|+|+.+|+++..
T Consensus 126 ----------~~~~~~~~~~~~~-~~~~~~~d~~gHGT~vAgiia~~~-n--------~~g~~GvAp~a~l~~~kv~~~~ 185 (395)
T 2z2z_A 126 ----------IAWCVSTLRGKVS-TKLRDCADQNGHGTHVIGTIAALN-N--------DIGVVGVAPGVQIYSVRVLDAR 185 (395)
T ss_dssp ----------EEEEEECGGGCCB-CCHHHHBCSSSHHHHHHHHHHCCC-S--------SSSCCCSSTTCEEEEEECSCTT
T ss_pred ----------cccCccccCCccc-CCCCCCCCCCCCHHHHHHHHHeec-C--------CCceEEECCCCEEEEEEEecCC
Confidence 2333333322100 000124678999999999999973 2 2335899999999999999887
Q ss_pred CCCCHHHHHHHHHHHhhC--------------------CCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 004113 257 YGCTGSNILAAFDDAIAD--------------------GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSA 316 (773)
Q Consensus 257 g~~~~~~i~~ai~~a~~~--------------------g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aA 316 (773)
+.+..+++++||+||+++ +++|||||||.... ...+..++.++.++|++||+||
T Consensus 186 g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~------~~~~~~ai~~a~~~gv~vV~AA 259 (395)
T 2z2z_A 186 GSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD------DSYLYDMIIQAYNAGIVIVAAS 259 (395)
T ss_dssp SEEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSCC------CHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCCC------CHHHHHHHHHHHHCCCEEEEEC
Confidence 667889999999999987 99999999997652 3567778889999999999999
Q ss_pred CCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCC
Q 004113 317 GNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDL 396 (773)
Q Consensus 317 GN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~ 396 (773)
||+|.....++...|++|+|||++.
T Consensus 260 GN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------------------------------- 284 (395)
T 2z2z_A 260 GNEGAPSPSYPAAYPEVIAVGAIDS------------------------------------------------------- 284 (395)
T ss_dssp CSSCCSSCCBTTTSTTEEEEEEECT-------------------------------------------------------
T ss_pred CCCCCCCCCCccCCCCEEEEEEecC-------------------------------------------------------
Confidence 9999877777778899999998532
Q ss_pred CCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCce
Q 004113 397 DSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPV 476 (773)
Q Consensus 397 ~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~ 476 (773)
T Consensus 285 -------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 285 -------------------------------------------------------------------------------- 284 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHH
Q 004113 477 ATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHIS 556 (773)
Q Consensus 477 ~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 556 (773)
.+.++.||++|| +|+|||++|+++++. +.|..++||||||||||
T Consensus 285 --------------~~~~a~fS~~G~----------~v~APG~~i~s~~~~------------~~y~~~sGTS~AaP~Va 328 (395)
T 2z2z_A 285 --------------NDNIASFSNRQP----------EVSAPGVDILSTYPD------------DSYETLMGTAMATPHVS 328 (395)
T ss_dssp --------------TSCBCTTSCSSC----------SEEEECSSEEEEETT------------TEEEEEESHHHHHHHHH
T ss_pred --------------CCCCCcccCCCC----------CEEeCCCCeeeecCC------------CceEecCCHHHHHHHHH
Confidence 147889999998 679999999999987 88999999999999999
Q ss_pred HHHHHHHhhCC-------------CCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCCC
Q 004113 557 GVVAAIKHQNP-------------TFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQP 618 (773)
Q Consensus 557 G~aALl~~~~p-------------~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 618 (773)
|++|||+|++| .|++.+||++|++||+++...+ .+..||||+||+.+|++.
T Consensus 329 G~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g-----------~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 329 GVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG-----------WDADYGYGVVRAALAVQA 392 (395)
T ss_dssp HHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSS-----------SBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCC-----------CCCCccCceeCHHHHHHH
Confidence 99999999999 9999999999999999986543 567899999999999874
No 6
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A
Probab=100.00 E-value=7.5e-56 Score=502.79 Aligned_cols=361 Identities=20% Similarity=0.262 Sum_probs=277.9
Q ss_pred CCceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEecceeeEEEEEcCHHHHHHHhC-CCCeEEEecCceeccc
Q 004113 29 KNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSK-KPGVVSIFPDPVLQLH 107 (773)
Q Consensus 29 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~~~i~~L~~-~p~V~~V~~~~~~~~~ 107 (773)
..+.|||++++.. .+.+++++.+.++++.|.. |++|+++++++++++|++ +|+|++|++++.+++.
T Consensus 43 ~~~~yiv~~~~~~------------~~~~~~~~~g~~v~~~~~~-~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~ 109 (471)
T 3t41_A 43 EELYYSVEYKNTA------------TFNKLVKKKSLNVVYNIPE-LHVAQIKMTKMHANALANYKNDIKYINATCSTCIT 109 (471)
T ss_dssp CCEEEEEEESCHH------------HHHHHHHHHTCEEEEEEGG-GTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBC
T ss_pred CceEEEEEcCCHH------------HHHHHHHhCCCEEEEecCC-ccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccc
Confidence 4567899776544 3445555566788999966 999999999999999999 9999999999888775
Q ss_pred cccCc----------cccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 004113 108 TTRSW----------DFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGND 177 (773)
Q Consensus 108 ~~~~~----------~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~ 177 (773)
..... ..|++.... ....+|..+.+|+||+|||||||||++||+|.+.. |.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~w~l~~i~----~~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~-------~~~~------ 172 (471)
T 3t41_A 110 SEKTIDRTSNESLFSRQWDMNKIT----NNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNF-------STDS------ 172 (471)
T ss_dssp CCCCCCC---CCSCCCCHHHHTTT----TTTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTB-------CTTC------
T ss_pred cccccccCCCCccccccccHhhcc----CcHHHHhccCCCCCcEEEEEeCCCCCCChhHhcCc-------ccCC------
Confidence 43321 123333221 11258999999999999999999999999998631 1110
Q ss_pred CCcccCCceeEeeeeccccccc-cCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC
Q 004113 178 NVSFSCNRKIIGARFYDIEDDV-VANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE 256 (773)
Q Consensus 178 f~~~~~n~ki~~~~~~~~~~~~-~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~ 256 (773)
..++....|...... ..+...+.|..||||||||||+|++ .+.||||+|+|+.+|+++..
T Consensus 173 -------~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~l~~~kv~~~~ 233 (471)
T 3t41_A 173 -------KNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSANG------------KLIGVAPNNKFTMYRVFGSK 233 (471)
T ss_dssp -------EECCCTTCGGGCCTTCCCCTTCCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSCEEEEECCSSS
T ss_pred -------cccccCCCccCCCcccCCCCCCCcCCCCccchhhheeecCC------------ceeEECCCCeEEEEEeccCC
Confidence 011111111111000 0122356789999999999999863 15899999999999999875
Q ss_pred CCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCC---C-------CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC-
Q 004113 257 YGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIV---R-------PLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGS- 325 (773)
Q Consensus 257 g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~---~-------~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~- 325 (773)
.+...++++||+||++++++|||||||...... . ....+.+..++.++.++|++||+||||+|.....
T Consensus 234 -~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~ 312 (471)
T 3t41_A 234 -KTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDK 312 (471)
T ss_dssp -CCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCH
T ss_pred -CCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcc
Confidence 788999999999999999999999999732100 0 0123567778888999999999999999976432
Q ss_pred -----------------cccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCcccc
Q 004113 326 -----------------VVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANE 388 (773)
Q Consensus 326 -----------------~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 388 (773)
.+...+++|+|||++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~----------------------------------------------- 345 (471)
T 3t41_A 313 QKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQ----------------------------------------------- 345 (471)
T ss_dssp HHHHHTTTCCSSSEEEEETTTSTTEEEEEEECT-----------------------------------------------
T ss_pred cccccccccccCCceeeccccCCCeEEEEeeCC-----------------------------------------------
Confidence 4456688888888532
Q ss_pred ccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHH
Q 004113 389 NAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAY 468 (773)
Q Consensus 389 ~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~ 468 (773)
T Consensus 346 -------------------------------------------------------------------------------- 345 (471)
T 3t41_A 346 -------------------------------------------------------------------------------- 345 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCcc----------------------EEeeec
Q 004113 469 INSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVN----------------------ILAAWM 526 (773)
Q Consensus 469 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~----------------------I~sa~~ 526 (773)
.+.++.||++||+. |||+|||++ |+++++
T Consensus 346 ----------------------~~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~ 396 (471)
T 3t41_A 346 ----------------------KSNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTAN 396 (471)
T ss_dssp ----------------------TSSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECT
T ss_pred ----------------------CCCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCC
Confidence 24688999999964 599999987 899988
Q ss_pred CCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCC-CCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCC
Q 004113 527 GNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNP-TFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDF 605 (773)
Q Consensus 527 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 605 (773)
. +.|..++|||||||||||++|||+|++| +++|++||++|++||++.... ++..|
T Consensus 397 ~------------~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~~------------~~~~~ 452 (471)
T 3t41_A 397 N------------GRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNK------------PFSRY 452 (471)
T ss_dssp T------------SSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSCC------------CHHHH
T ss_pred C------------CCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCCC------------CcCcc
Confidence 7 7899999999999999999999999999 899999999999999987542 67899
Q ss_pred CcccccccccCCCc
Q 004113 606 GAGEVSTTASLQPG 619 (773)
Q Consensus 606 G~G~id~~~A~~~~ 619 (773)
|||+||+.+|++..
T Consensus 453 G~G~vd~~~Al~~a 466 (471)
T 3t41_A 453 GHGELDVYKALNVA 466 (471)
T ss_dssp TTCBBCHHHHTTTT
T ss_pred ccChhCHHHHHHHH
Confidence 99999999999853
No 7
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1
Probab=100.00 E-value=2.1e-54 Score=498.97 Aligned_cols=375 Identities=22% Similarity=0.248 Sum_probs=274.8
Q ss_pred CCCCceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEecceeeEEEEEcCH----HHHHHHhC--CCCeEEEec
Q 004113 27 GSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSA----EEAHALSK--KPGVVSIFP 100 (773)
Q Consensus 27 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~----~~i~~L~~--~p~V~~V~~ 100 (773)
+..+++|||+|++.. . .+++++..+.++++++.. +++++++++. +.+++|++ +|+|++|||
T Consensus 28 ~~~~~~~IV~~k~~~-~-----------~~~~~~~~g~~v~~~~~~-i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vep 94 (671)
T 1r6v_A 28 EYTEGKILVGYNDRS-E-----------VDKIVKAVNGKVVLELPQ-IKVVSIKLNGMTVKQAYDKIKALALKGIRYVEP 94 (671)
T ss_dssp SBCTTEEEEEESSHH-H-----------HHHHHHHHTCEEEEEEGG-GTEEEEECSSCCHHHHHHHHTTSCCSSEEEEEC
T ss_pred ccCCccEEEEECCCc-C-----------HHHHHHhcCCeEEEEcCC-CcEEEEEeCCcCHHHHHHHHHhccCCCceEEec
Confidence 346899999999766 1 122223334577888876 8999999864 33567764 899999999
Q ss_pred Cceecccccc----C-----------------------ccccCcccccccCCCCCCC-CCCCCCCCCcEEEEEccCCCCC
Q 004113 101 DPVLQLHTTR----S-----------------------WDFLKIQTDVLIDSVPSPS-LNSQDQESDTIIGILDTGVWPE 152 (773)
Q Consensus 101 ~~~~~~~~~~----~-----------------------~~~~gl~~~~~~~~~~~~~-~~~~~~G~Gv~VaVIDtGid~~ 152 (773)
+..+++.... . ...|++.. +....+ |+. .+|+||+|||||||||++
T Consensus 95 d~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~-----I~~~~a~w~~-~tG~gV~VAVIDTGVd~~ 168 (671)
T 1r6v_A 95 SYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEA-----IGVTQQLWEE-ASGTNIIVAVVDTGVDGT 168 (671)
T ss_dssp CBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHH-----TTCCHHHHHH-CSCTTCEEEEEESCCBTT
T ss_pred CeEEEeccccccCcccccccccccccccccccccccccccCCchhc-----cCCchhhhhc-cCCCCCEEEEEeCCCCCC
Confidence 9766543100 0 01122221 122345 877 899999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccc
Q 004113 153 SESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYG 232 (773)
Q Consensus 153 Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G 232 (773)
||+|.++- +. +.+.+.+... ....+..|..||||||||||||.. +
T Consensus 169 HpdL~~~~-------~~-------------------g~~~~~~~~~--p~~~d~~d~~gHGThVAGiIAa~~-n------ 213 (671)
T 1r6v_A 169 HPDLEGQV-------IA-------------------GYRPAFDEEL--PAGTDSSYGGSAGTHVAGTIAAKK-D------ 213 (671)
T ss_dssp SGGGTTTB-------CC-------------------EEEGGGTEEE--CTTCBCCTTCSHHHHHHHHHHCCC-S------
T ss_pred CccccccE-------Ee-------------------cccccCCCcC--CCCCCCccCCCcchhhhhhhhccC-C------
Confidence 99998531 11 1111111000 001234467899999999999974 2
Q ss_pred cccceeeeccCCceEEEEEeecC------CCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHH
Q 004113 233 LAAGTAIGGSPGSRIAVYRVCSP------EYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAV 306 (773)
Q Consensus 233 ~~~~~~~GvAP~A~l~~~kv~~~------~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~ 306 (773)
+..+.||||+|+|+.+|+++. .+......+++||+||+++|++|||||||... ....+..++.+|.
T Consensus 214 --g~gv~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~------~s~~l~~Ai~~A~ 285 (671)
T 1r6v_A 214 --GKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG------YSYTMKEAFDYAM 285 (671)
T ss_dssp --SSSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC------CCHHHHHHHHHHH
T ss_pred --CCceEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC------CCHHHHHHHHHHH
Confidence 233589999999999999986 22244567899999999999999999999754 2367788889999
Q ss_pred hCCcEEEEecCCCCCCC-CCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCc
Q 004113 307 EHGITVVCSAGNDGPSS-GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDD 385 (773)
Q Consensus 307 ~~Gi~vV~aAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 385 (773)
++|+++|+||||+|... ..++...|++|+|||++.+..
T Consensus 286 ~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~----------------------------------------- 324 (671)
T 1r6v_A 286 EHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG----------------------------------------- 324 (671)
T ss_dssp HTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT-----------------------------------------
T ss_pred hCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC-----------------------------------------
Confidence 99999999999999764 455667799999998643210
Q ss_pred cccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHH
Q 004113 386 ANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEI 465 (773)
Q Consensus 386 ~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l 465 (773)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCC------CCCCCCC
Q 004113 466 LAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGE------APEGKEP 539 (773)
Q Consensus 466 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~------~~~~~~~ 539 (773)
...++.||++||.. ||+|||++|+++++...... .+.....
T Consensus 325 -------------------------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~ 371 (671)
T 1r6v_A 325 -------------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNG 371 (671)
T ss_dssp -------------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSS
T ss_pred -------------------------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCC
Confidence 01478999999975 99999999999987532110 0011223
Q ss_pred CcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCCCc
Q 004113 540 PLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPG 619 (773)
Q Consensus 540 ~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~~ 619 (773)
+.|..++|||||||||||++|||+|++|++++.+||++|++||+++...+ .+..||||+||+.+|++..
T Consensus 372 ~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g-----------~d~~~G~G~vna~~Al~~~ 440 (671)
T 1r6v_A 372 GTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG-----------WDHDTGYGLVKLDAALQGP 440 (671)
T ss_dssp CCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS-----------CBTTTBTCBCCHHHHHHCC
T ss_pred CceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC-----------CCCCcccceeCHHHHhhhh
Confidence 57999999999999999999999999999999999999999999886543 4678999999999999987
Q ss_pred eeecCCchh
Q 004113 620 LVYETTTLD 628 (773)
Q Consensus 620 lv~~~~~~~ 628 (773)
+..+....+
T Consensus 441 l~~~~~~~~ 449 (671)
T 1r6v_A 441 LPTQGGVEE 449 (671)
T ss_dssp CCSSSEEEE
T ss_pred cCCCCCccc
Confidence 766544433
No 8
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=100.00 E-value=3.1e-54 Score=484.06 Aligned_cols=382 Identities=24% Similarity=0.297 Sum_probs=278.2
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCC
Q 004113 128 SPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPR 207 (773)
Q Consensus 128 ~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~ 207 (773)
..+|+.+ |+||+|||||||||++||+|.+. .| ..+++... .+...+.
T Consensus 14 ~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~-------~~--------------------~~~~~~~~----~~~~~~~ 60 (441)
T 1y9z_A 14 TVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN-------NV--------------------TGTNNSGT----GNWYQPG 60 (441)
T ss_dssp SSSCCTT--GGGCEEEEEESCCCTTSTTTTTS-------EE--------------------EECCCTTS----CCTTCCC
T ss_pred hhhhhcC--CCCcEEEEEcCCCCCCChhHhcC-------cc--------------------cCcccCCC----CCCCCCC
Confidence 3688764 77999999999999999999742 11 11111111 0113467
Q ss_pred CCCCCchhhHHhhccCCcCCCcccccccceeeeccCCc--eEEEEEeecCCCCCCHHHHHHHHHHHhhC-CCcEEEeccC
Q 004113 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGS--RIAVYRVCSPEYGCTGSNILAAFDDAIAD-GVDVLSLSLG 284 (773)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A--~l~~~kv~~~~g~~~~~~i~~ai~~a~~~-g~dVIN~SlG 284 (773)
|..||||||||||+|... +..+.||||+| +|+.+|+++..+.+..+++++||+||+++ |++|||||||
T Consensus 61 d~~gHGT~vAgiia~~~~---------~~g~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~G 131 (441)
T 1y9z_A 61 NNNAHGTHVAGTIAAIAN---------NEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG 131 (441)
T ss_dssp SSCCHHHHHHHHHHCCCS---------SSBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCC
T ss_pred CCCCcHHHHHHHHhcccC---------CCCceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEEEeCCC
Confidence 889999999999999752 22368999995 99999999987567888999999999999 9999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECC-----------
Q 004113 285 GSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGG----------- 353 (773)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~----------- 353 (773)
.... ...+..++.++.++|++||+||||+|.....++...+++|+|||++.+.....+...+.
T Consensus 132 ~~~~------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i 205 (441)
T 1y9z_A 132 GSGS------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAI 205 (441)
T ss_dssp BSCC------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSE
T ss_pred CCCC------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCe
Confidence 7652 24567778889999999999999999877777778899999999987754332222221
Q ss_pred --------ce----EEeeeeeccCCC-CCCCcee--eEEcCCCCcCccccccccCCCCC--CcccccccceEEEEecCCC
Q 004113 354 --------NK----VIKGESINFSNL-QKSPVYP--LIYAKSAKKDDANENAARNCDLD--SLAGALVKGKIVLCDNDDD 416 (773)
Q Consensus 354 --------~~----~~~g~~~~~~~~-~~~~~~~--~v~~~~~~~~~~~~~~~~~c~~~--~~~~~~~~gki~l~~~~~~ 416 (773)
+. ++.|.+++.... +....++ +.+..... ..........|... .++..+++|||++|+|+.+
T Consensus 206 ~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~-~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~rg~~ 284 (441)
T 1y9z_A 206 LSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPI-NASATGALAECTVNGTSFSCGNMANKICLVERVGN 284 (441)
T ss_dssp EEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCC-CCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSC
T ss_pred eccccCCCcccceeecccccccccccCcccccccCCcccccccc-ccccccchhccccccccccCCCccccEEEEecccc
Confidence 11 122222221110 0000000 01111000 00111223457754 5678899999999999865
Q ss_pred ---CCchhhhhcccccCCceEEEEEeCCCc-c-------ccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeee
Q 004113 417 ---MGSVVDKKDGVKSLGGVGVIVIDDQSR-A-------VASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSV 485 (773)
Q Consensus 417 ---~~~~~~k~~~~~~~Ga~g~i~~~~~~~-~-------~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~ 485 (773)
...+.+|..+++++|+.|+|++++... . .......+|.+.++.++|+.|+.|+.+. .+
T Consensus 285 ~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~t------- 353 (441)
T 1y9z_A 285 QGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----TT------- 353 (441)
T ss_dssp SSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----EE-------
T ss_pred CcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----cc-------
Confidence 357788999999999999999998652 1 1234568999999999999999875321 10
Q ss_pred ecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhh
Q 004113 486 TKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ 565 (773)
Q Consensus 486 ~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 565 (773)
+ ++... +.|..++|||||||||||++|||+|+
T Consensus 354 ----------------------------~--------~~~~~------------~~y~~~sGTSmAaP~VAG~aALl~~~ 385 (441)
T 1y9z_A 354 ----------------------------V--------SNQGN------------QDYEYYNGTSMATPHVSGVATLVWSY 385 (441)
T ss_dssp ----------------------------E--------EEEEE------------ESEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------c--------ccccC------------CCceeecccccCCcccchHHHHHHHH
Confidence 0 11222 68999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCCCceeecCCchhhhccccccCCC
Q 004113 566 NPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYD 639 (773)
Q Consensus 566 ~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~~lv~~~~~~~~~~~~~~~g~~ 639 (773)
||+|+|++||++||+||++++..+ ++.+||+|+||+.+|+ ||+.|||.+++.
T Consensus 386 ~p~~sp~~ik~~L~~TA~~~~~~g-----------~~~~~G~G~vn~~~A~-----------~~~~~lc~~~~~ 437 (441)
T 1y9z_A 386 HPECSASQVRAALNATADDLSVAG-----------RDNQTGYGMINAVAAK-----------AYLDESCTGPTD 437 (441)
T ss_dssp CTTSCHHHHHHHHHHHSBCCSSSS-----------CBTTTBTCBCCHHHHH-----------HHHHHCTTCC--
T ss_pred CCCCCHHHHHHHHHhhchhhccCC-----------CcccccccccCHHHHH-----------HHHHhhhcCCCC
Confidence 999999999999999999987654 4568999999999995 589999998764
No 9
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Probab=100.00 E-value=3.1e-56 Score=510.50 Aligned_cols=339 Identities=20% Similarity=0.226 Sum_probs=57.4
Q ss_pred ceEEEEeccCCCCCCCchhHHHHHHHHHhccc--CccEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEecCceecccc
Q 004113 31 GVYIVYMGAAASGKGSLRDDHAQLLASMLKWK--KNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQLHT 108 (773)
Q Consensus 31 ~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~~V~~~~~~~~~~ 108 (773)
++|||+|+++. . ......+.+.+....... ..++++.|+..|+||+++++++++++|+++|+|++||+++.+..+.
T Consensus 76 g~YIV~lk~~~-~-~~~~~~~~~~l~a~~~~~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~~ 153 (692)
T 2p4e_P 76 GTYVVVLKEET-H-LSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQS 153 (692)
T ss_dssp EEEEEEECTTC-C-HHHHHHHHHHHHHHHHHTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC-
T ss_pred CcEEEEECCCC-C-HHHHHHHHHHHHHHHhhcccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccCC
Confidence 59999999888 4 222233334444433222 3689999999999999999999999999999999999999876522
Q ss_pred ccCccccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeE
Q 004113 109 TRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKII 188 (773)
Q Consensus 109 ~~~~~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~ 188 (773)
.+ |++......... ...|..+.+|+||+|||||||||++||+|.+... |. +|+
T Consensus 154 -~p---WgL~~i~~~~~~-~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~-------~~~--------- 206 (692)
T 2p4e_P 154 -IP---WNLERITPPRYR-ADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT-------DFE--------- 206 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CC---cchhhccccccc-ccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ec-------ccc---------
Confidence 22 444443211111 2378888999999999999999999999986411 10 110
Q ss_pred eeeeccccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHH
Q 004113 189 GARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAF 268 (773)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai 268 (773)
.+.+.+.. .....+.|..||||||||||+|+. .||||+|+|+.+|+++..+.++.+++++||
T Consensus 207 ---~~~d~dg~-~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI 268 (692)
T 2p4e_P 207 ---NVPEEDGT-RFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGL 268 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---cccCCCCC-cccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHH
Confidence 00000000 000345688999999999999873 799999999999999988678889999999
Q ss_pred HHHhhC------CCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC-cccCCCcEEEEccccc
Q 004113 269 DDAIAD------GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGS-VVNFAPWIFTVAASTI 341 (773)
Q Consensus 269 ~~a~~~------g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~-~~~~~p~vitVga~~~ 341 (773)
+|++++ +++|||||||+.. . ..+..++.++.++|++||+||||+|.+... .+...|++|+|||++.
T Consensus 269 ~~a~~~~~~~~~g~~VINmSlGg~~---s----~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~ 341 (692)
T 2p4e_P 269 EFIRKSQLVQPVGPLVVLLPLAGGY---S----RVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNA 341 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhcccCCceEEEecCCCCC---c----HHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcC
Confidence 999986 8999999999754 3 344455588889999999999999976533 3556799999999654
Q ss_pred CcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchh
Q 004113 342 DRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVV 421 (773)
Q Consensus 342 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~ 421 (773)
+...
T Consensus 342 ~~~~---------------------------------------------------------------------------- 345 (692)
T 2p4e_P 342 QDQP---------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCc----------------------------------------------------------------------------
Confidence 2100
Q ss_pred hhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCC
Q 004113 422 DKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARG 501 (773)
Q Consensus 422 ~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G 501 (773)
...-+.||++|
T Consensus 346 ---------------------------------------------------------------------a~~ss~fSn~G 356 (692)
T 2p4e_P 346 ---------------------------------------------------------------------VTLGTLGTNFG 356 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------------cccccccCCCC
Confidence 00012389999
Q ss_pred CCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004113 502 PSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTT 581 (773)
Q Consensus 502 p~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~T 581 (773)
| ||||+|||++|+++++... +.|..++|||||||||||++|||++++|+|+|++||++|++|
T Consensus 357 ~--------~vDI~APG~~I~St~~~~~----------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~t 418 (692)
T 2p4e_P 357 R--------CVDLFAPGEDIIGASSDCS----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHF 418 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C--------ceeEEecCCcEEeeccCCC----------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 8 5699999999999997622 578999999999999999999999999999999999999999
Q ss_pred ccccC
Q 004113 582 ATQTN 586 (773)
Q Consensus 582 A~~~~ 586 (773)
|.+..
T Consensus 419 A~~~~ 423 (692)
T 2p4e_P 419 SAKDV 423 (692)
T ss_dssp -----
T ss_pred ccccc
Confidence 98753
No 10
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1
Probab=100.00 E-value=4.3e-51 Score=430.71 Aligned_cols=258 Identities=29% Similarity=0.362 Sum_probs=214.7
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|+.+..|+||+|||||||||++||+|.+ +++..++|.++. ..+.|
T Consensus 22 ~aw~~~~g~~gv~VaViDtGvd~~hp~l~~---------------------------~~~~~~~~~~~~------~~~~d 68 (280)
T 1dbi_A 22 YAWDVTKGSSGQEIAVIDTGVDYTHPDLDG---------------------------KVIKGYDFVDND------YDPMD 68 (280)
T ss_dssp HHTTTCCCCTTCEEEEEESCCCTTSTTTTT---------------------------TEEEEEETTTTB------SCCCC
T ss_pred HHHhhcCCCCCCEEEEEeCCcCCCChhhcc---------------------------CcccceeccCCC------CCCCC
Confidence 689998888899999999999999999974 234455555432 34678
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||||+|...++ ..+.||||+|+|+.+|+++..+.+..+++++||+||+++|++|||||||...
T Consensus 69 ~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~- 139 (280)
T 1dbi_A 69 LNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC- 139 (280)
T ss_dssp SSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC-
T ss_pred CCCcHHHHHHHHhCcCCCC--------CcceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-
Confidence 8999999999999976432 2358999999999999998876788999999999999999999999999864
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCC
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 368 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 368 (773)
....+..++.++.++|+++|+||||+|......+...+++|+|||++.
T Consensus 140 -----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------------- 187 (280)
T 1dbi_A 140 -----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ--------------------------- 187 (280)
T ss_dssp -----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT---------------------------
T ss_pred -----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCC---------------------------
Confidence 236677888999999999999999999776666777899999998532
Q ss_pred CCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccccc
Q 004113 369 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 448 (773)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 448 (773)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T 1dbi_A 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCC
Q 004113 449 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGN 528 (773)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~ 528 (773)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 188 ------------------------------------------~~~~~~~S~~G~~~--------dv~ApG~~i~s~~~~- 216 (280)
T 1dbi_A 188 ------------------------------------------YDRLASFSNYGTWV--------DVVAPGVDIVSTITG- 216 (280)
T ss_dssp ------------------------------------------TSCBCTTBCCSTTC--------CEEEECSSEEEEETT-
T ss_pred ------------------------------------------CCCcCCCCCCCCCc--------eEEEecCCeEeecCC-
Confidence 13678999999854 999999999999987
Q ss_pred CCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcc
Q 004113 529 DTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAG 608 (773)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 608 (773)
+.|..++|||||||||||++|||++ |.+++.+||++|++||+++.. ....||+|
T Consensus 217 -----------~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~-------------~~~~~G~G 270 (280)
T 1dbi_A 217 -----------NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG-------------TGTYFKYG 270 (280)
T ss_dssp -----------TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT-------------BTTTBSSE
T ss_pred -----------CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC-------------CCCcccCC
Confidence 8899999999999999999999987 899999999999999998764 23579999
Q ss_pred cccccccCC
Q 004113 609 EVSTTASLQ 617 (773)
Q Consensus 609 ~id~~~A~~ 617 (773)
+||+.+|++
T Consensus 271 ~vn~~~A~~ 279 (280)
T 1dbi_A 271 RINSYNAVT 279 (280)
T ss_dssp ECCHHHHHT
T ss_pred EECHHHHhc
Confidence 999999986
No 11
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*
Probab=100.00 E-value=3e-51 Score=429.05 Aligned_cols=255 Identities=29% Similarity=0.408 Sum_probs=219.4
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|..+++|+||+|+|||||| .+||+|+. ...++|..+. ..+.|
T Consensus 15 ~a~~~g~~G~gv~VaViDtGi-~~h~~l~~-----------------------------~~~~~~~~~~------~~~~d 58 (269)
T 1gci_A 15 AAHNRGLTGSGVKVAVLDTGI-STHPDLNI-----------------------------RGGASFVPGE------PSTQD 58 (269)
T ss_dssp HHHHTTCSCTTCEEEEEESCC-CCCTTCCE-----------------------------EEEEECSTTC------CSCSC
T ss_pred HHHhcCCCCCCCEEEEECCCC-CCCHhhcc-----------------------------cCCcccCCCC------CCCCC
Confidence 589999999999999999999 89999941 2233343321 34578
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..||||||||||+|.. +...+.||||+|+|+.+|+++..+.+..+++++||+|+++++++|||||||....
T Consensus 59 ~~gHGT~vAgiia~~~---------~~~~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~~ 129 (269)
T 1gci_A 59 GNGHGTHVAGTIAALN---------NSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSP 129 (269)
T ss_dssp SSSHHHHHHHHHHCCC---------SSSBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSSC
T ss_pred CCCChHHHHHHHhcCc---------CCCCcEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC
Confidence 8999999999999973 2233589999999999999988767788999999999999999999999998652
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCC
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 368 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 368 (773)
...+..+++++.++|+++|+||||+|......+...+++|+||+++.
T Consensus 130 ------~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------------- 176 (269)
T 1gci_A 130 ------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ--------------------------- 176 (269)
T ss_dssp ------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT---------------------------
T ss_pred ------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC---------------------------
Confidence 35677888999999999999999999877777777899999998532
Q ss_pred CCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccccc
Q 004113 369 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 448 (773)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 448 (773)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T 1gci_A 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCC
Q 004113 449 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGN 528 (773)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~ 528 (773)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 177 ------------------------------------------~~~~~~~S~~G~~~--------di~APG~~i~s~~~~- 205 (269)
T 1gci_A 177 ------------------------------------------NNNRASFSQYGAGL--------DIVAPGVNVQSTYPG- 205 (269)
T ss_dssp ------------------------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEETT-
T ss_pred ------------------------------------------CCCCCCCCCCCCCc--------ceEecCCCeEeecCC-
Confidence 13678999999964 999999999999987
Q ss_pred CCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcc
Q 004113 529 DTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAG 608 (773)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 608 (773)
+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++. ++..||+|
T Consensus 206 -----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g--------------~~~~~G~G 260 (269)
T 1gci_A 206 -----------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------------STNLYGSG 260 (269)
T ss_dssp -----------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS--------------CHHHHTTC
T ss_pred -----------CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC--------------CCCCcccC
Confidence 88999999999999999999999999999999999999999999874 35689999
Q ss_pred cccccccCC
Q 004113 609 EVSTTASLQ 617 (773)
Q Consensus 609 ~id~~~A~~ 617 (773)
+||+.+|++
T Consensus 261 ~vn~~~A~~ 269 (269)
T 1gci_A 261 LVNAEAATR 269 (269)
T ss_dssp BCCHHHHTC
T ss_pred ccCHHHHcC
Confidence 999999985
No 12
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...
Probab=100.00 E-value=2e-51 Score=432.03 Aligned_cols=256 Identities=26% Similarity=0.417 Sum_probs=216.9
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|..+++|+||+|||||||||++||+|+. ...++|..+. ....|
T Consensus 15 ~~~~~g~~G~gv~VaViDtGid~~h~~l~~-----------------------------~~g~~~~~~~------~~~~d 59 (274)
T 1r0r_E 15 KVQAQGFKGANVKVAVLDTGIQASHPDLNV-----------------------------VGGASFVAGE------AYNTD 59 (274)
T ss_dssp HHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECSTTC------CTTCC
T ss_pred HHHhcCCCCCCCEEEEEcCCCCCCCHhHcC-----------------------------CCCccccCCC------CCCCC
Confidence 589999999999999999999999999941 2223333221 33567
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||||+|.. +...+.||||+|+|+.+|++...+.+..++++++|+|+++++++|||||||....
T Consensus 60 ~~gHGT~vAgiia~~~---------~~~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~ 130 (274)
T 1r0r_E 60 GNGHGTHVAGTVAALD---------NTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASG 130 (274)
T ss_dssp SSSHHHHHHHHHHCCS---------SSSBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSSC
T ss_pred CCCCHHHHHHHHHccC---------CCCceEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCCC
Confidence 8999999999999973 2233589999999999999988766788899999999999999999999998652
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC----CCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeecc
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS----GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINF 364 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~ 364 (773)
...+..++.++.++|+++|+||||+|... ...+...|++|+||+++.
T Consensus 131 ------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~----------------------- 181 (274)
T 1r0r_E 131 ------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS----------------------- 181 (274)
T ss_dssp ------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT-----------------------
T ss_pred ------cHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC-----------------------
Confidence 36778888999999999999999999753 334455688899988532
Q ss_pred CCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc
Q 004113 365 SNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA 444 (773)
Q Consensus 365 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 444 (773)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEee
Q 004113 445 VASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAA 524 (773)
Q Consensus 445 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa 524 (773)
.+.++.||++||. |||+|||++|+++
T Consensus 182 ----------------------------------------------~~~~~~~S~~G~~--------~di~APG~~i~s~ 207 (274)
T 1r0r_E 182 ----------------------------------------------NSNRASFSSVGAE--------LEVMAPGAGVYST 207 (274)
T ss_dssp ----------------------------------------------TSCBCTTCCCSTT--------EEEEEECSSEEEE
T ss_pred ----------------------------------------------CCCcCccCCCCCC--------ceEEeCCCCeEee
Confidence 1367899999984 4999999999999
Q ss_pred ecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCC
Q 004113 525 WMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYD 604 (773)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 604 (773)
++. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++. ++..
T Consensus 208 ~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g--------------~~~~ 261 (274)
T 1r0r_E 208 YPT------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------------SSFY 261 (274)
T ss_dssp ETT------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------------CHHH
T ss_pred cCC------------CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC--------------CCCC
Confidence 987 88999999999999999999999999999999999999999999874 4578
Q ss_pred CCcccccccccCC
Q 004113 605 FGAGEVSTTASLQ 617 (773)
Q Consensus 605 ~G~G~id~~~A~~ 617 (773)
||+|+||+.+|++
T Consensus 262 ~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 262 YGKGLINVEAAAQ 274 (274)
T ss_dssp HTTCBCCHHHHTC
T ss_pred cccCccCHHHHhC
Confidence 9999999999985
No 13
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Probab=100.00 E-value=7.6e-51 Score=429.02 Aligned_cols=258 Identities=27% Similarity=0.418 Sum_probs=217.4
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|..+++|+||+|||||||||++||+|+. ...++|..+. .....|
T Consensus 15 ~~~~~g~~G~gv~VaViDtGid~~h~~l~~-----------------------------~~g~~~~~~~-----~~~~~d 60 (281)
T 1to2_E 15 ALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-----------------------------AGGASMVPSE-----TNPFQD 60 (281)
T ss_dssp HHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECCTTC-----CCTTCC
T ss_pred HHHhcCCCCCCCEEEEEcCCCCCCCHHHcC-----------------------------cCCccccCCC-----CCCCCC
Confidence 589999999999999999999999999952 1222332221 122367
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||||+|.. +...+.||||+|+|+.+|++...+.+..++++++|+|+++++++|||||||....
T Consensus 61 ~~gHGT~vAgiia~~~---------~~~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~ 131 (281)
T 1to2_E 61 NNSHGTHVAGTVAALN---------NSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSG 131 (281)
T ss_dssp SSSHHHHHHHHHHCCS---------SSSSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSCC
T ss_pred CCCcHHHHHHHHhccC---------CCCcceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcEEEECCcCCCC
Confidence 8999999999999973 2233589999999999999988766788999999999999999999999998652
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC----CCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeecc
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS----GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINF 364 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~ 364 (773)
...+..+++++.++|++||+||||+|... ...+...|++|+|||++.
T Consensus 132 ------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~----------------------- 182 (281)
T 1to2_E 132 ------SAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS----------------------- 182 (281)
T ss_dssp ------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT-----------------------
T ss_pred ------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC-----------------------
Confidence 36778888999999999999999999752 334455688999987532
Q ss_pred CCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc
Q 004113 365 SNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA 444 (773)
Q Consensus 365 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 444 (773)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEee
Q 004113 445 VASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAA 524 (773)
Q Consensus 445 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa 524 (773)
.+.++.||++||. |||+|||++|+++
T Consensus 183 ----------------------------------------------~~~~~~fS~~G~~--------~di~APG~~i~s~ 208 (281)
T 1to2_E 183 ----------------------------------------------SNQRASFSSVGPE--------LDVMAPGVSIQST 208 (281)
T ss_dssp ----------------------------------------------TSCBCTTCCCSTT--------CCEEEECSSEEEE
T ss_pred ----------------------------------------------CCCcCCcCCCCCC--------ceEEecCCCeEee
Confidence 1367899999995 4999999999999
Q ss_pred ecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCC
Q 004113 525 WMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYD 604 (773)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 604 (773)
++. +.|..++|||||||+|||++|||+|++|+|++++||++|++||+++. +++.
T Consensus 209 ~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g--------------~~~~ 262 (281)
T 1to2_E 209 LPG------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG--------------DSFY 262 (281)
T ss_dssp ETT------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--------------CHHH
T ss_pred cCC------------CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC--------------CCCC
Confidence 987 88999999999999999999999999999999999999999999874 4578
Q ss_pred CCcccccccccCCC
Q 004113 605 FGAGEVSTTASLQP 618 (773)
Q Consensus 605 ~G~G~id~~~A~~~ 618 (773)
||||+||+.+|+++
T Consensus 263 ~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 263 YGKGLINVQAAAQH 276 (281)
T ss_dssp HTTCBCCHHHHTSS
T ss_pred cccceecHHHHhhh
Confidence 99999999999985
No 14
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Probab=100.00 E-value=4e-51 Score=440.30 Aligned_cols=263 Identities=25% Similarity=0.379 Sum_probs=216.2
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|+.+++|+||+|||||||||++||+|.+ ++...++|..++. .+.....|
T Consensus 32 ~aw~~~~~G~gv~VaViDtGid~~Hp~l~~---------------------------~~~~~~~~~~~~~--~~~~~~~d 82 (327)
T 2x8j_A 32 AVWRASAKGAGQIIGVIDTGCQVDHPDLAE---------------------------RIIGGVNLTTDYG--GDETNFSD 82 (327)
T ss_dssp HHHHHHGGGTTCEEEEEESCCCTTCTTTGG---------------------------GEEEEEECSSGGG--GCTTCCCC
T ss_pred HHHhcCCCCCCCEEEEEcCCCCCCChhHhh---------------------------cccCCccccCCCC--CCCCCCCC
Confidence 589999999999999999999999999974 3444455544321 01123578
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh------CCCcEEEec
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA------DGVDVLSLS 282 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~------~g~dVIN~S 282 (773)
..||||||||||+|.. ++..+.||||+|+|+.+|+++..+.+..+++++||+||++ .+++|||||
T Consensus 83 ~~gHGT~VAgiia~~~---------~~~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~Vin~S 153 (327)
T 2x8j_A 83 NNGHGTHVAGTVAAAE---------TGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMS 153 (327)
T ss_dssp SSSHHHHHHHHHHCCC---------CSSBCCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCCTTSCCCSEEEEC
T ss_pred CCCchHHHHHHHhccC---------CCCCcEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcccccCCceEEEEC
Confidence 8999999999999974 2233689999999999999988766788999999999999 899999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-----CCcccCCCcEEEEcccccCcceeeEEEECCceEE
Q 004113 283 LGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS-----GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVI 357 (773)
Q Consensus 283 lG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~ 357 (773)
||.... ...+..++.++.++|++||+||||+|... ...+...+++|+|||++.
T Consensus 154 ~G~~~~------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~---------------- 211 (327)
T 2x8j_A 154 LGGPTD------SEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDF---------------- 211 (327)
T ss_dssp EEBSCC------CHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECT----------------
T ss_pred CCcCCC------CHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECC----------------
Confidence 997652 36677888899999999999999999652 344556689999998532
Q ss_pred eeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEE
Q 004113 358 KGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIV 437 (773)
Q Consensus 358 ~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~ 437 (773)
T Consensus 212 -------------------------------------------------------------------------------- 211 (327)
T 2x8j_A 212 -------------------------------------------------------------------------------- 211 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeC
Q 004113 438 IDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAP 517 (773)
Q Consensus 438 ~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~AP 517 (773)
.+.++.||++||. |||+||
T Consensus 212 -----------------------------------------------------~~~~~~fS~~G~~--------~di~AP 230 (327)
T 2x8j_A 212 -----------------------------------------------------DLRLSDFTNTNEE--------IDIVAP 230 (327)
T ss_dssp -----------------------------------------------------TCCBSCC---CCC--------CSEEEE
T ss_pred -----------------------------------------------------CCCCCCccCCCCC--------ceEecC
Confidence 1367899999984 599999
Q ss_pred CccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhh-----CCCCCHHHHHHHHHhcccccCCCCCcc
Q 004113 518 GVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ-----NPTFSPSEIKSAVMTTATQTNNLRAPI 592 (773)
Q Consensus 518 G~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-----~p~ls~~~Ik~~L~~TA~~~~~~g~~~ 592 (773)
|++|+++++. +.|..++|||||||+|||++|||+|+ +|.+++.+||++|++||+++..
T Consensus 231 G~~i~s~~~~------------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~----- 293 (327)
T 2x8j_A 231 GVGIKSTYLD------------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGF----- 293 (327)
T ss_dssp CSSEEEECST------------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS-----
T ss_pred cCceEeecCC------------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC-----
Confidence 9999999987 78999999999999999999999999 9999999999999999998742
Q ss_pred ccCCCCCCCCCCCCcccccccccCC
Q 004113 593 TTNSGAAATPYDFGAGEVSTTASLQ 617 (773)
Q Consensus 593 ~~~~~~~~~~~~~G~G~id~~~A~~ 617 (773)
++..||+|+||+.+|++
T Consensus 294 --------~~~~~G~G~vd~~~A~~ 310 (327)
T 2x8j_A 294 --------TAQAEGNGFLTLDLVER 310 (327)
T ss_dssp --------CHHHHTTCEECTTHHHH
T ss_pred --------CCCceeeeEECHHHHHH
Confidence 56789999999999998
No 15
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Probab=100.00 E-value=3.9e-50 Score=423.44 Aligned_cols=257 Identities=28% Similarity=0.398 Sum_probs=220.2
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|+.. +|+||+|||||||||++||+|.+ +++..++|.++. ..+.|
T Consensus 22 ~aw~~~-~G~gv~VaViDtGvd~~h~~l~~---------------------------~~~~~~~~~~~~------~~~~d 67 (279)
T 1thm_A 22 QAWDIA-EGSGAKIAIVDTGVQSNHPDLAG---------------------------KVVGGWDFVDND------STPQN 67 (279)
T ss_dssp HHHTTC-CCTTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEETTTTB------SCCCC
T ss_pred HHHhcC-CCCCCEEEEEccCCCCCCcchhc---------------------------CccccccccCCC------CCCCC
Confidence 588876 69999999999999999999974 344455555432 44678
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||||+|...++ ..+.||||+|+|+.+|+++..+.+..+++++||+||++++++|||||||....
T Consensus 68 ~~gHGT~vAgiia~~~~n~--------~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~ 139 (279)
T 1thm_A 68 GNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVG 139 (279)
T ss_dssp SSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSSC
T ss_pred CCCcHHHHHHHHhCccCCC--------CccEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEecCCCCC
Confidence 8999999999999986432 23589999999999999988767888999999999999999999999998652
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCC
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 368 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 368 (773)
...+..++.++.++|+++|+||||+|.....++...+++|+|||++.
T Consensus 140 ------~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------------- 186 (279)
T 1thm_A 140 ------NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ--------------------------- 186 (279)
T ss_dssp ------CHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT---------------------------
T ss_pred ------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCC---------------------------
Confidence 36778888999999999999999999877777777899999998532
Q ss_pred CCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccccc
Q 004113 369 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 448 (773)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 448 (773)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 1thm_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCC
Q 004113 449 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGN 528 (773)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~ 528 (773)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 187 ------------------------------------------~~~~~~fS~~G~~~--------dv~APG~~i~s~~~~- 215 (279)
T 1thm_A 187 ------------------------------------------NDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT- 215 (279)
T ss_dssp ------------------------------------------TSCBCTTCCCCTTC--------CEEEECSSEEEEETT-
T ss_pred ------------------------------------------CCCcCCcCCCCCce--------EEEEcCCCeEEEeCC-
Confidence 13678999999854 999999999999987
Q ss_pred CCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcc
Q 004113 529 DTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAG 608 (773)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 608 (773)
+.|..++|||||||||||++||| ++|.+++++||++|++||+++... ...||+|
T Consensus 216 -----------~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~-------------~~~~G~G 269 (279)
T 1thm_A 216 -----------STYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT-------------GTYWAKG 269 (279)
T ss_dssp -----------TEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB-------------TTTBSSE
T ss_pred -----------CCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC-------------CccccCC
Confidence 88999999999999999999999 579999999999999999998653 2579999
Q ss_pred cccccccCC
Q 004113 609 EVSTTASLQ 617 (773)
Q Consensus 609 ~id~~~A~~ 617 (773)
+||+.+|++
T Consensus 270 ~vn~~~A~~ 278 (279)
T 1thm_A 270 RVNAYKAVQ 278 (279)
T ss_dssp ECCHHHHHH
T ss_pred eeCHHHHhc
Confidence 999999975
No 16
>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A
Probab=100.00 E-value=3.3e-52 Score=454.46 Aligned_cols=302 Identities=18% Similarity=0.215 Sum_probs=196.1
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCcee-----EeeeeccccccccCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKI-----IGARFYDIEDDVVANG 203 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki-----~~~~~~~~~~~~~~~~ 203 (773)
++|+.+..|++|+|||||||||++||+|.+....+....|+..++....... ..+..+ .+............+.
T Consensus 22 ~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (357)
T 4h6x_A 22 DLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDY-AAFQSIRDQGLKGKEKEEALEAVIPDT 100 (357)
T ss_dssp HHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHH-HHHHHHHHHTCCSHHHHHHHHHHCTTT
T ss_pred HHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccc-cccccccCccccccccccccccccCCC
Confidence 5899999899999999999999999999976655555566544432210000 000000 0000000000000111
Q ss_pred CCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC-----CCCCHHHHHHHHHHHhhCCCcE
Q 004113 204 QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE-----YGCTGSNILAAFDDAIADGVDV 278 (773)
Q Consensus 204 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~-----g~~~~~~i~~ai~~a~~~g~dV 278 (773)
..+.|.+||||||||||+|+. +..+.||||+|+|+.+|++... +.....+++++|+|+++.|++|
T Consensus 101 ~~~~D~~gHGThVAGiiag~~----------~~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g~~V 170 (357)
T 4h6x_A 101 KDRIVLNDHACHVTSTIVGQE----------HSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANI 170 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCCT----------TSSCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTTCSE
T ss_pred CCCcCCCCcHHHHHHHHhccC----------CCCceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcCCCE
Confidence 234467799999999999974 2236899999999999997543 1234567899999999999999
Q ss_pred EEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEe
Q 004113 279 LSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIK 358 (773)
Q Consensus 279 IN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~ 358 (773)
||||||.... .....+.+..++.++.++|+++|+||||+|.....++...|++|+|||++.
T Consensus 171 in~S~G~~~~--~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~----------------- 231 (357)
T 4h6x_A 171 IHCAFCRPTQ--TSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV----------------- 231 (357)
T ss_dssp EEEC-------------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT-----------------
T ss_pred EeeccccCCc--cccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc-----------------
Confidence 9999998653 345567888888999999999999999999877777777899999998542
Q ss_pred eeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEE
Q 004113 359 GESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVI 438 (773)
Q Consensus 359 g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~ 438 (773)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCC
Q 004113 439 DDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPG 518 (773)
Q Consensus 439 ~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG 518 (773)
.+.++.||+||+. ..||||+|||
T Consensus 232 ----------------------------------------------------~~~~~~fSn~G~~-----~~~~di~APG 254 (357)
T 4h6x_A 232 ----------------------------------------------------DGTPCHFSNWGGN-----NTKEGILAPG 254 (357)
T ss_dssp ----------------------------------------------------TSSBCTTCC---C-----TTTTEEEEEC
T ss_pred ----------------------------------------------------CCcccccccCCCC-----CCccceeecC
Confidence 2478899999974 4599999999
Q ss_pred ccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhh----CCCCCHHHHHHHHHhcccccCCCCCcccc
Q 004113 519 VNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ----NPTFSPSEIKSAVMTTATQTNNLRAPITT 594 (773)
Q Consensus 519 ~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~ 594 (773)
++|+++++.. +.|..++|||||||||||++|||+++ +|.|++++||++|++||++++..+
T Consensus 255 ~~i~s~~~~~-----------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~----- 318 (357)
T 4h6x_A 255 EEILGAQPCT-----------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV----- 318 (357)
T ss_dssp SSEEECCTTC-----------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-------------
T ss_pred CCeEeccCCC-----------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCC-----
Confidence 9999998762 56778999999999999999999954 578999999999999999876432
Q ss_pred CCCCCCCCCCCCcccccccccCC
Q 004113 595 NSGAAATPYDFGAGEVSTTASLQ 617 (773)
Q Consensus 595 ~~~~~~~~~~~G~G~id~~~A~~ 617 (773)
...+.+||+|+||+.+|++
T Consensus 319 ----~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 319 ----VEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp ----------CTTCBCCHHHHHH
T ss_pred ----CCCcccceeEEecHHHHHH
Confidence 2256789999999999997
No 17
>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A
Probab=100.00 E-value=1.2e-50 Score=428.93 Aligned_cols=266 Identities=23% Similarity=0.252 Sum_probs=212.7
Q ss_pred CCCC-CCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCC
Q 004113 134 QDQE-SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGH 212 (773)
Q Consensus 134 ~~~G-~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gH 212 (773)
.++| +||+|||||||||++||+|.+.. +..+++.... ......|..||
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~---------------------------~~~~~~~~~~----~~~~d~~~~gH 51 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGAD---------------------------LTVLPTLAPT----AARSDGFMSAH 51 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCE---------------------------EEECCCSSCC----CCCTTCHHHHH
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCe---------------------------eecCcCCCCC----CCCCCCCCCCc
Confidence 4578 69999999999999999997531 1111111110 11223345789
Q ss_pred chhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC-CCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCC
Q 004113 213 GTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE-YGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVR 291 (773)
Q Consensus 213 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~-g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~ 291 (773)
||||||||+|+.. ..+.||||+|+|+.+|++.+. +.....+++++|+||++++++|||||||.... .
T Consensus 52 GT~VAGiiag~~~----------~~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~--~ 119 (282)
T 3zxy_A 52 GTHVASIIFGQPE----------TSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTD--F 119 (282)
T ss_dssp HHHHHHHHHCCTT----------SSSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEES--S
T ss_pred ccceeehhhccCC----------ceeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccc--c
Confidence 9999999999742 235899999999999998655 34677889999999999999999999997643 2
Q ss_pred CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCC
Q 004113 292 PLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSP 371 (773)
Q Consensus 292 ~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 371 (773)
......+..++.++.++|+++|+||||+|......+...|++|+|||++.
T Consensus 120 ~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------ 169 (282)
T 3zxy_A 120 GEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDD------------------------------ 169 (282)
T ss_dssp SCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECT------------------------------
T ss_pred ccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcC------------------------------
Confidence 34456678888999999999999999999877777777899999998532
Q ss_pred ceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCcc
Q 004113 372 VYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGT 451 (773)
Q Consensus 372 ~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 451 (773)
T Consensus 170 -------------------------------------------------------------------------------- 169 (282)
T 3zxy_A 170 -------------------------------------------------------------------------------- 169 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCC
Q 004113 452 FPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTG 531 (773)
Q Consensus 452 ~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~ 531 (773)
.+.++.||+||+. ..||||+|||++|+++++.
T Consensus 170 ---------------------------------------~~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~---- 201 (282)
T 3zxy_A 170 ---------------------------------------HGHPLDFSNWGST-----YEQQGILAPGEDILGAKPG---- 201 (282)
T ss_dssp ---------------------------------------TSCBCSSSCCCHH-----HHHHEEEEECSSEEEECTT----
T ss_pred ---------------------------------------CCccccccCCCCC-----ccccceeccCcceeeecCC----
Confidence 2467889999874 4689999999999999987
Q ss_pred CCCCCCCCCcceeeccccchhhHHHHHHHHHHhhC----CCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCc
Q 004113 532 EAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQN----PTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGA 607 (773)
Q Consensus 532 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~----p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~ 607 (773)
+.|..++|||||||||||++|||++++ |.++|++||++|++||++++... +.....||+
T Consensus 202 --------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~~---------~~~~~~~G~ 264 (282)
T 3zxy_A 202 --------GGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDDA---------PEQARRCLA 264 (282)
T ss_dssp --------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC----------------CGGGTT
T ss_pred --------CceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCCC---------CCccCceee
Confidence 889999999999999999999999874 78999999999999999875431 225678999
Q ss_pred ccccccccCC
Q 004113 608 GEVSTTASLQ 617 (773)
Q Consensus 608 G~id~~~A~~ 617 (773)
|+||+.+|++
T Consensus 265 G~ln~~~A~~ 274 (282)
T 3zxy_A 265 GRLNVSGAFT 274 (282)
T ss_dssp CBCCHHHHHH
T ss_pred eEeCHHHHHH
Confidence 9999999987
No 18
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Probab=100.00 E-value=2.7e-49 Score=424.47 Aligned_cols=281 Identities=28% Similarity=0.355 Sum_probs=224.0
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCC
Q 004113 128 SPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPR 207 (773)
Q Consensus 128 ~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~ 207 (773)
.++|..+++|+||+|||||||||++||+|.++ +...++|..... .......
T Consensus 16 ~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~---------------------------~~~~~~~~~~~~--~~~~~~~ 66 (310)
T 2ixt_A 16 NDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT--PINNSCT 66 (310)
T ss_dssp CTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS--CEETCCC
T ss_pred hhhhhccCCCCCcEEEEEecCCCCCCHHHhhc---------------------------ccccccccCCCC--CCCCCCC
Confidence 37999999999999999999999999999742 233344433210 0012356
Q ss_pred CCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCC-----cEEEec
Q 004113 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGV-----DVLSLS 282 (773)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~-----dVIN~S 282 (773)
|..||||||||||+|...+ +...+.||||+|+|+.+|++...+.+..++++++|+|++++++ +|||||
T Consensus 67 d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vin~S 139 (310)
T 2ixt_A 67 DRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMS 139 (310)
T ss_dssp CSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCCeEEEEc
Confidence 7899999999999997522 2334689999999999999988767788999999999999887 999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC--CCcccCCCcEEEEcccccCcceeeEEEECCceEEeee
Q 004113 283 LGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS--GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGE 360 (773)
Q Consensus 283 lG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~--~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~ 360 (773)
||.... ...+..++.++.++|++||+||||+|... ...+...|++|+|||++...
T Consensus 140 ~G~~~~------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~----------------- 196 (310)
T 2ixt_A 140 LGSSAN------NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ----------------- 196 (310)
T ss_dssp CCBSSC------CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE-----------------
T ss_pred CCCCCC------CHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc-----------------
Confidence 998652 36677788899999999999999999763 34455679999999864210
Q ss_pred eeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeC
Q 004113 361 SINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDD 440 (773)
Q Consensus 361 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~ 440 (773)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCC--ccccccCCCCCCCC----CCCccCce
Q 004113 441 QSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAP--AIAYFSARGPSPLT----RNILKPDI 514 (773)
Q Consensus 441 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSs~Gp~~~~----d~~iKPDI 514 (773)
..+ .++.||++||.... ..+.||||
T Consensus 197 -------------------------------------------------~~g~~~~~~~S~~G~~~~~g~~~~~~~~~di 227 (310)
T 2ixt_A 197 -------------------------------------------------QNGTYRVADYSSRGYISTAGDYVIQEGDIEI 227 (310)
T ss_dssp -------------------------------------------------ETTEEEECTTSCCCCTTTTTSSSCCTTCCCE
T ss_pred -------------------------------------------------cCCCeeeccccCCCCccCCccccccCCCeeE
Confidence 001 57889999995421 12359999
Q ss_pred EeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCcccc
Q 004113 515 TAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITT 594 (773)
Q Consensus 515 ~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~ 594 (773)
+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||++++..+.
T Consensus 228 ~ApG~~i~s~~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~---- 291 (310)
T 2ixt_A 228 SAPGSSVYSTWYN------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG---- 291 (310)
T ss_dssp EEECSSEEEECTT------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS----
T ss_pred ECCCCCEeeecCC------------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCC----
Confidence 9999999999887 789999999999999999999999999999999999999999998865421
Q ss_pred CCCCCCCCCCCCcccccc
Q 004113 595 NSGAAATPYDFGAGEVST 612 (773)
Q Consensus 595 ~~~~~~~~~~~G~G~id~ 612 (773)
......++..||||++|+
T Consensus 292 ~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 292 YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp TTCCSSSBTTTBTCBCCC
T ss_pred cccccCCccccccceeec
Confidence 111344778999999986
No 19
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Probab=100.00 E-value=7.1e-50 Score=430.08 Aligned_cols=264 Identities=29% Similarity=0.376 Sum_probs=219.8
Q ss_pred CCCCCCCCCC--CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 129 PSLNSQDQES--DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 129 ~~~~~~~~G~--Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
.+|+.+ +|+ ||+|||||||||++||+|.++ +...++|..+... .+....
T Consensus 19 ~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~~~~-~~~~~~ 69 (320)
T 2z30_A 19 SVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---------------------------IAWCVSTLRGKVS-TKLRDC 69 (320)
T ss_dssp GGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG---------------------------EEEEEECGGGCCB-CCHHHH
T ss_pred HHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc---------------------------cccCccccCCccC-CCCCCC
Confidence 689988 899 999999999999999999742 2333333322100 000123
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhC------------
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIAD------------ 274 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~------------ 274 (773)
.|..||||||||||+|.. ++..+.||||+|+|+.+|+++..+.+..++++++|+||+++
T Consensus 70 ~d~~gHGT~vAgiia~~~---------n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~ 140 (320)
T 2z30_A 70 ADQNGHGTHVIGTIAALN---------NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGI 140 (320)
T ss_dssp BCSSSHHHHHHHHHHCCS---------SSBSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSCTTSSSC
T ss_pred CCCCCCHHHHHHHHHccc---------CCCceEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHhCcccccccccccc
Confidence 578999999999999973 22335899999999999999887667889999999999987
Q ss_pred --------CCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCccee
Q 004113 275 --------GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFE 346 (773)
Q Consensus 275 --------g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~ 346 (773)
+++|||||||.... ...+..++.++.++|++||+||||+|.....++...|++|+|||++.
T Consensus 141 ~~~~~~~~~~~Vin~S~G~~~~------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~----- 209 (320)
T 2z30_A 141 IAGDPDDDAAEVISMSLGGPAD------DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS----- 209 (320)
T ss_dssp CTTCTTSCCCSEEEECEEBSCC------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-----
T ss_pred cccccccCCceEEEecCCCCCC------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeCC-----
Confidence 99999999998652 35677788889999999999999999877777778899999998532
Q ss_pred eEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcc
Q 004113 347 SDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDG 426 (773)
Q Consensus 347 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~ 426 (773)
T Consensus 210 -------------------------------------------------------------------------------- 209 (320)
T 2z30_A 210 -------------------------------------------------------------------------------- 209 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCC
Q 004113 427 VKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLT 506 (773)
Q Consensus 427 ~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 506 (773)
.+.++.||++||
T Consensus 210 ----------------------------------------------------------------~~~~~~~S~~g~---- 221 (320)
T 2z30_A 210 ----------------------------------------------------------------NDNIASFSNRQP---- 221 (320)
T ss_dssp ----------------------------------------------------------------TSCBCTTSCSSC----
T ss_pred ----------------------------------------------------------------CCCcCcccCCCC----
Confidence 136789999997
Q ss_pred CCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhC-------------CCCCHHH
Q 004113 507 RNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQN-------------PTFSPSE 573 (773)
Q Consensus 507 d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-------------p~ls~~~ 573 (773)
+|+|||++|+++++. +.|..++|||||||||||++|||+|++ |++++.+
T Consensus 222 ------~v~APG~~i~s~~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~ 283 (320)
T 2z30_A 222 ------EVSAPGVDILSTYPD------------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNT 283 (320)
T ss_dssp ------SEEEECSSEEEEETT------------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTS
T ss_pred ------CEEeCCCCeEEeccC------------CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHH
Confidence 789999999999987 889999999999999999999999998 9999999
Q ss_pred HHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCCC
Q 004113 574 IKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQP 618 (773)
Q Consensus 574 Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 618 (773)
||++|++||+++...+ .+..||+|+||+.+|++.
T Consensus 284 v~~~L~~ta~~~~~~g-----------~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 284 VRGILHITADDLGPTG-----------WDADYGYGVVRAALAVQA 317 (320)
T ss_dssp HHHHHHHHSBCCSSSS-----------SBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHhhCccCCCCC-----------CCCCcCCceeCHHHHHHH
Confidence 9999999999886543 567899999999999873
No 20
>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}
Probab=100.00 E-value=3e-50 Score=431.32 Aligned_cols=271 Identities=23% Similarity=0.262 Sum_probs=219.8
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
++|+.+..++||+|||||||||++||+|.++ .+....++..+. .....|
T Consensus 12 ~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~~~-----~~~~~d 60 (306)
T 4h6w_A 12 KLWSETRGDPKICVAVLDGIVDQNHPCFIGA--------------------------DLTRLPSLVSGE-----ANANGS 60 (306)
T ss_dssp HHHHHCSCCTTCEEEEESSCCCTTSGGGTTC--------------------------EEEECC---------------CC
T ss_pred HHHhhhCCCCCCEEEEEcCCCCCCChhHcCC--------------------------cccCCCcccCCC-----CCCCCC
Confidence 5899887779999999999999999999753 122222222221 133456
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC-CCCCHHHHHHHHHHHhhCCCcEEEeccCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE-YGCTGSNILAAFDDAIADGVDVLSLSLGGSA 287 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~-g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 287 (773)
..+|||||||||+|+. ++.+.||||+|+|+.+|++.+. +.....+++++|+||++++++|||+|||...
T Consensus 61 ~~gHGThVAGiiag~~----------~~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~~ 130 (306)
T 4h6w_A 61 MSTHGTHVASIIFGQH----------DSPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLT 130 (306)
T ss_dssp CCHHHHHHHHHHHCCT----------TSSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEEE
T ss_pred CCCchHHHHHHHHccc----------cCCcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeeccccccc
Confidence 7899999999999974 2246899999999999998655 4567888999999999999999999999754
Q ss_pred CCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCC
Q 004113 288 GIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNL 367 (773)
Q Consensus 288 ~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~ 367 (773)
. .......+..++.++.++|+++|++|||+|......+...+++|+|||++.
T Consensus 131 ~--~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~-------------------------- 182 (306)
T 4h6w_A 131 D--AGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDD-------------------------- 182 (306)
T ss_dssp S--SSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECT--------------------------
T ss_pred c--CCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecC--------------------------
Confidence 3 344556788888999999999999999999877667777789999998532
Q ss_pred CCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccc
Q 004113 368 QKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVAS 447 (773)
Q Consensus 368 ~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~ 447 (773)
T Consensus 183 -------------------------------------------------------------------------------- 182 (306)
T 4h6w_A 183 -------------------------------------------------------------------------------- 182 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecC
Q 004113 448 SYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMG 527 (773)
Q Consensus 448 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~ 527 (773)
.+.++.||++|+. ..||||+|||++|+++++.
T Consensus 183 -------------------------------------------~~~~~~~s~~g~~-----~~~~di~APG~~i~s~~~~ 214 (306)
T 4h6w_A 183 -------------------------------------------QGKPVDFSNWGDA-----YQKQGILAPGKDILGAKPN 214 (306)
T ss_dssp -------------------------------------------TSCBCSSSCBCHH-----HHHHEEEEECSSEEEECTT
T ss_pred -------------------------------------------CCCccccccccCC-----cCcceeecCCcCcccccCC
Confidence 1367788999864 4689999999999999987
Q ss_pred CCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhh----CCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCC
Q 004113 528 NDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ----NPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPY 603 (773)
Q Consensus 528 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~ 603 (773)
+.|..++|||||||||||++|||+++ +|.++|++||++|++||+++...+. .+..
T Consensus 215 ------------~~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~~---------~~~~ 273 (306)
T 4h6w_A 215 ------------GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKDT---------DDQS 273 (306)
T ss_dssp ------------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTTC---------SCGG
T ss_pred ------------CceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCCC---------CCCC
Confidence 88999999999999999999999864 6999999999999999999866531 2445
Q ss_pred CCCcccccccccCC
Q 004113 604 DFGAGEVSTTASLQ 617 (773)
Q Consensus 604 ~~G~G~id~~~A~~ 617 (773)
.||+|+||+.+|++
T Consensus 274 ~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 274 RCLMGKLNILDAIE 287 (306)
T ss_dssp GGTTCBCCHHHHHH
T ss_pred CcceeecCHHHHHH
Confidence 79999999999998
No 21
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Probab=100.00 E-value=2.1e-49 Score=431.84 Aligned_cols=269 Identities=20% Similarity=0.182 Sum_probs=216.4
Q ss_pred CCCCCCCCCC--CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 129 PSLNSQDQES--DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 129 ~~~~~~~~G~--Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
.+|+. .+|+ ||+||||||||| +||+|.++ +...++|..+.. +......
T Consensus 34 ~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~---------------------------~~~~~~~~~~~~-~~~~~~~ 83 (347)
T 2iy9_A 34 ETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS---------------------------EFAKFSFTQDGS-PFPVKKS 83 (347)
T ss_dssp HHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC---------------------------EEEEEECBTTCC-SSCCSSS
T ss_pred HHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC---------------------------cccCCcccCCCC-CCCCCCC
Confidence 58887 8999 999999999999 99999742 333344432210 0011245
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhC------CCcEEE
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIAD------GVDVLS 280 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~------g~dVIN 280 (773)
.|..||||||||||+|+ .| +.||||+|+|+.+|++...+. . ++++||+||+++ +++|||
T Consensus 84 ~d~~gHGT~vAgiia~~-------~g-----~~GvAp~a~l~~~~v~~~~~~-~--~~~~ai~~a~~~~~~~~~~~~Vin 148 (347)
T 2iy9_A 84 EALYIHGTAMASLIASR-------YG-----IYGVYPHALISSRRVIPDGVQ-D--SWIRAIESIMSNVFLAPGEEKIIN 148 (347)
T ss_dssp HHHHHHHHHHHHHHHCS-------SS-----SCCSSTTCEEEEEECCSSBCT-T--HHHHHHHHHHTCTTSCTTEEEEEE
T ss_pred CCCCCcHHHHHHHHhcc-------cC-----CcccCCCCEEEEEEEecCCCH-H--HHHHHHHHHHhhhhcccCCceEEE
Confidence 66889999999999987 12 489999999999999987622 2 999999999999 999999
Q ss_pred eccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCC-------CCCcccCCC----------cEEEEccccc--
Q 004113 281 LSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPS-------SGSVVNFAP----------WIFTVAASTI-- 341 (773)
Q Consensus 281 ~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~-------~~~~~~~~p----------~vitVga~~~-- 341 (773)
||||... .......+..++.++.++|++||+||||+|.. ...++...+ ++|+|||++.
T Consensus 149 ~S~G~~~---~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~~ 225 (347)
T 2iy9_A 149 ISGGQKG---VASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYR 225 (347)
T ss_dssp ESSCBCC---C-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECCCC
T ss_pred eccccCC---CCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcccCC
Confidence 9999765 23455778888899999999999999999975 334555567 9999998654
Q ss_pred CcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchh
Q 004113 342 DRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVV 421 (773)
Q Consensus 342 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~ 421 (773)
+....
T Consensus 226 ~g~~~--------------------------------------------------------------------------- 230 (347)
T 2iy9_A 226 KGETP--------------------------------------------------------------------------- 230 (347)
T ss_dssp TTSCC---------------------------------------------------------------------------
T ss_pred CCcee---------------------------------------------------------------------------
Confidence 11000
Q ss_pred hhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCC
Q 004113 422 DKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARG 501 (773)
Q Consensus 422 ~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G 501 (773)
...+.++.||++|
T Consensus 231 -------------------------------------------------------------------~~~~~~~~fS~~G 243 (347)
T 2iy9_A 231 -------------------------------------------------------------------VLHGGGITGSRFG 243 (347)
T ss_dssp -------------------------------------------------------------------CBCCCSSSCBCBC
T ss_pred -------------------------------------------------------------------cccCCCCCCCCCC
Confidence 0013567999999
Q ss_pred CCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004113 502 PSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTT 581 (773)
Q Consensus 502 p~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~T 581 (773)
|+ ||||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++|
T Consensus 244 ~~-------~~di~APG~~i~s~~~~------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~t 304 (347)
T 2iy9_A 244 NN-------WVDIAAPGQNITFLRPD------------AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLES 304 (347)
T ss_dssp TT-------TCSEEEECSSEEEECTT------------SCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred CC-------CCEEEeCCCCeEeecCC------------CCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 95 67999999999999987 889999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccccCCCCCCCCCCCCcccccccccCCC
Q 004113 582 ATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQP 618 (773)
Q Consensus 582 A~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 618 (773)
|+++... .+..||+|+||+.+|++.
T Consensus 305 A~~~~~~------------~~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 305 ADKYPSL------------VDKVTEGRVLNAEKAISM 329 (347)
T ss_dssp SEECGGG------------TTTSGGGEECCHHHHHHH
T ss_pred CccCCCC------------CCccccCCEecHHHHHHH
Confidence 9998764 346999999999999984
No 22
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Probab=100.00 E-value=7.1e-48 Score=406.43 Aligned_cols=251 Identities=26% Similarity=0.351 Sum_probs=210.4
Q ss_pred ccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeec
Q 004113 114 FLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFY 193 (773)
Q Consensus 114 ~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~ 193 (773)
.|+|....+...+...+|..+++|+||+|||||||||++||+|.+ ++...++|
T Consensus 5 ~W~l~~i~~~~~~~~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~---------------------------~~~~~~~~ 57 (284)
T 1sh7_A 5 IWGLDRIDQRNLPLDRNYNANFDGFGVTAYVIDTGVNNNHEEFGG---------------------------RSVSGYDF 57 (284)
T ss_dssp CHHHHHHTCSSSSCCSBCCCSCCCTTCEEEEEESCCCTTCTTTTT---------------------------CEEEEEET
T ss_pred CcChhhcCCcccCchhhhhcCCCCCCCEEEEEcCCCCCCChhHcC---------------------------Cccccccc
Confidence 455555443344455799999999999999999999999999974 23344555
Q ss_pred cccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh
Q 004113 194 DIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA 273 (773)
Q Consensus 194 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~ 273 (773)
.+.. ..+.|..+|||||||||+|.. .||||+|+|+.+|+++..+.+..+++++||+|+++
T Consensus 58 ~~~~------~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~ 117 (284)
T 1sh7_A 58 VDND------ADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQ 117 (284)
T ss_dssp TTTB------SCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHH
T ss_pred cCCC------CCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHh
Confidence 4432 356789999999999999873 69999999999999988767888999999999997
Q ss_pred --CCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCcEEEEcccccCcceeeEEE
Q 004113 274 --DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG-SVVNFAPWIFTVAASTIDRDFESDIV 350 (773)
Q Consensus 274 --~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~ 350 (773)
.+++|||||||... ...+..++.++.++|++||+||||+|.... ..+...|++|+|||++.
T Consensus 118 ~~~~~~Vin~S~G~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------- 181 (284)
T 1sh7_A 118 NASGPSVANMSLGGGQ-------STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS--------- 181 (284)
T ss_dssp HCCSSEEEEECCCBSC-------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT---------
T ss_pred CCCCCcEEEeCCCCCC-------CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC---------
Confidence 47999999999764 266778888999999999999999996532 34556789999998532
Q ss_pred ECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccC
Q 004113 351 LGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSL 430 (773)
Q Consensus 351 ~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~ 430 (773)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCc
Q 004113 431 GGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNIL 510 (773)
Q Consensus 431 Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~i 510 (773)
.+.++.||++||..
T Consensus 182 ------------------------------------------------------------~~~~~~~S~~G~~~------ 195 (284)
T 1sh7_A 182 ------------------------------------------------------------SDSRSSFSNWGSCV------ 195 (284)
T ss_dssp ------------------------------------------------------------TSBBCTTCCBSTTC------
T ss_pred ------------------------------------------------------------CCCcCcccCCCCcc------
Confidence 13678999999965
Q ss_pred cCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCC
Q 004113 511 KPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNN 587 (773)
Q Consensus 511 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~ 587 (773)
||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++++||++|++||++...
T Consensus 196 --di~ApG~~i~s~~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 258 (284)
T 1sh7_A 196 --DLFAPGSQIKSAWYD------------GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENKV 258 (284)
T ss_dssp --CEEEECSSEEEECTT------------SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred --EEEeccCCeEEecCC------------CCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCc
Confidence 999999999999887 789999999999999999999999999999999999999999998754
No 23
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A
Probab=100.00 E-value=3.6e-48 Score=434.44 Aligned_cols=291 Identities=25% Similarity=0.312 Sum_probs=224.1
Q ss_pred CCCC-CCCCCCCcEEEEEccCCCC------CCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccC
Q 004113 129 PSLN-SQDQESDTIIGILDTGVWP------ESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVA 201 (773)
Q Consensus 129 ~~~~-~~~~G~Gv~VaVIDtGid~------~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~ 201 (773)
.+|+ .+++|+||+|||||||||+ .||+|.+ ++...++|.+.
T Consensus 12 ~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~---------------------------~i~~~~~~~~~----- 59 (434)
T 1wmd_A 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRG---------------------------KITALYALGRT----- 59 (434)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTT---------------------------CEEEEEETTTT-----
T ss_pred hhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCC---------------------------CEeeeccccCC-----
Confidence 5887 6999999999999999999 7999863 34444555432
Q ss_pred CCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCC--CHHHHHHHHHHHhhCCCcEE
Q 004113 202 NGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGC--TGSNILAAFDDAIADGVDVL 279 (773)
Q Consensus 202 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~--~~~~i~~ai~~a~~~g~dVI 279 (773)
..+.|..||||||||||+|++. .+.||||+|+|+.+|++...+.. ...++.++|++++++|++||
T Consensus 60 --~~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a~~~g~~Vi 126 (434)
T 1wmd_A 60 --NNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIH 126 (434)
T ss_dssp --TCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEE
T ss_pred --CCCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHHHhcCCeEE
Confidence 3567889999999999998641 25899999999999999876333 45689999999999999999
Q ss_pred EeccCCCCCCCCCCCCcHHHHHHHHH-HhCCcEEEEecCCCCCCCCC--cccCCCcEEEEcccccCcceeeEEEECCceE
Q 004113 280 SLSLGGSAGIVRPLTDDPIALGAFHA-VEHGITVVCSAGNDGPSSGS--VVNFAPWIFTVAASTIDRDFESDIVLGGNKV 356 (773)
Q Consensus 280 N~SlG~~~~~~~~~~~~~~~~~~~~a-~~~Gi~vV~aAGN~g~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~g~~~~ 356 (773)
|||||.... ..+ +....+++++ .++|++||+||||+|..... .+..++++|+|||++..+...
T Consensus 127 n~S~G~~~~---~~~-~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~---------- 192 (434)
T 1wmd_A 127 TNSWGAAVN---GAY-TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF---------- 192 (434)
T ss_dssp EECCCBCCT---TCC-CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG----------
T ss_pred EecCCCCcC---CcC-CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc----------
Confidence 999998652 112 3445555555 58999999999999976433 445679999999975432100
Q ss_pred EeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEE
Q 004113 357 IKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVI 436 (773)
Q Consensus 357 ~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i 436 (773)
+.
T Consensus 193 ----------------------------------------~~-------------------------------------- 194 (434)
T 1wmd_A 193 ----------------------------------------GS-------------------------------------- 194 (434)
T ss_dssp ----------------------------------------CG--------------------------------------
T ss_pred ----------------------------------------Cc--------------------------------------
Confidence 00
Q ss_pred EEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEe
Q 004113 437 VIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITA 516 (773)
Q Consensus 437 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~A 516 (773)
.....+.++.||++||+. ++++||||+|
T Consensus 195 --------------------------------------------------~~~~~~~~a~fS~~G~~~--~g~~kpdi~A 222 (434)
T 1wmd_A 195 --------------------------------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMA 222 (434)
T ss_dssp --------------------------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEE
T ss_pred --------------------------------------------------ccCCCCccccccCCCCCC--CCCCCceEEc
Confidence 001135889999999997 7999999999
Q ss_pred CCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCC-----CHHHHHHHHHhcccccCCCCCc
Q 004113 517 PGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTF-----SPSEIKSAVMTTATQTNNLRAP 591 (773)
Q Consensus 517 PG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~l-----s~~~Ik~~L~~TA~~~~~~g~~ 591 (773)
||++|+++++.............+.|..++|||||||||||++|||+|++|++ ++++||++|++||+++...
T Consensus 223 pG~~i~s~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~~--- 299 (434)
T 1wmd_A 223 PGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLG--- 299 (434)
T ss_dssp ECSSEEEECCTTCCGGGSSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSC---
T ss_pred CCCCeEecCCCCCCCcccccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCCC---
Confidence 99999999864221000000012689999999999999999999999998875 8999999999999986432
Q ss_pred cccCCCCCCCCCCCCcccccccccCCCc
Q 004113 592 ITTNSGAAATPYDFGAGEVSTTASLQPG 619 (773)
Q Consensus 592 ~~~~~~~~~~~~~~G~G~id~~~A~~~~ 619 (773)
.+++.||||++|+.+|++..
T Consensus 300 --------~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 300 --------YPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp --------SSCTTTTTCBCCHHHHHTCE
T ss_pred --------CCCccCCcCeEeHHHhcccc
Confidence 26789999999999999754
No 24
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=100.00 E-value=2.5e-47 Score=457.00 Aligned_cols=408 Identities=20% Similarity=0.192 Sum_probs=267.8
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHH
Q 004113 139 DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAS 218 (773)
Q Consensus 139 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAG 218 (773)
+|+|||||||++.+|++.... ..|+. ..++... .+.+....++.++.+ ......|..||||||||
T Consensus 214 ~V~VAVIDTG~d~DL~d~~~l------~~Y~~----~~dyg~F--~D~v~~~~n~~Ddgd---~~~~v~D~~GHGThVAG 278 (1354)
T 3lxu_X 214 DGWLTIVDTTEQGDLDQALRI------GEYSR----THETRNV--DDFLSISVNVHDEGN---VLEVVGMSSPHGTHVSS 278 (1354)
T ss_dssp SSCEEEECSSSSCCSSCSEEE------ECTTT----TCCCCEE--SSSCEEEEEEEGGGT---EEEEEECCCHHHHHHHH
T ss_pred CEEEEEEeCCCCCCccccccc------ccccc----ccccccc--ccccCCCCccCCCCC---ccccCCCCCCcHHHHHH
Confidence 699999999998766654210 01110 1111100 122222222222210 00123478999999999
Q ss_pred hhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCC--CCHHHHHHHHHHHhh-----CCCcEEEeccCCCCCCCC
Q 004113 219 TAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYG--CTGSNILAAFDDAIA-----DGVDVLSLSLGGSAGIVR 291 (773)
Q Consensus 219 iiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~--~~~~~i~~ai~~a~~-----~g~dVIN~SlG~~~~~~~ 291 (773)
||||.. + +..+.||||+|+|+.+|+++..++ ....+++.+|.+|++ .|++|||||||....
T Consensus 279 IIAa~~-N--------~~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~~--- 346 (1354)
T 3lxu_X 279 IASGNH-S--------SRDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHAN--- 346 (1354)
T ss_dssp HHCCCC-S--------SSSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCCS---
T ss_pred HHhcCC-C--------CCCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCCC---
Confidence 999986 3 233589999999999999977533 255678888888877 799999999999762
Q ss_pred CCCCcHHHHHHHHHH-hCCcEEEEecCCCCCCCCCc--cc--CCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCC
Q 004113 292 PLTDDPIALGAFHAV-EHGITVVCSAGNDGPSSGSV--VN--FAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSN 366 (773)
Q Consensus 292 ~~~~~~~~~~~~~a~-~~Gi~vV~aAGN~g~~~~~~--~~--~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 366 (773)
....+.+..++.++. ++|++||+||||+|....++ +. .++++|+|||++.+.........
T Consensus 347 ~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~--------------- 411 (1354)
T 3lxu_X 347 WSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM--------------- 411 (1354)
T ss_dssp CSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC-------------------
T ss_pred CCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc---------------
Confidence 334467777788875 89999999999999765443 33 36999999997643211000000
Q ss_pred CCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccc
Q 004113 367 LQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA 446 (773)
Q Consensus 367 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~ 446 (773)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeec
Q 004113 447 SSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWM 526 (773)
Q Consensus 447 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~ 526 (773)
.....+.++.|||+||+. ++++||||+|||++|.++..
T Consensus 412 ----------------------------------------~~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~ 449 (1354)
T 3lxu_X 412 ----------------------------------------REKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQ 449 (1354)
T ss_dssp ----------------------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC--------
T ss_pred ----------------------------------------ccCCCCccccccCCCCCc--cCCCcceEEecCceEEEeec
Confidence 000125789999999997 69999999999999999865
Q ss_pred CCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCC
Q 004113 527 GNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATP 602 (773)
Q Consensus 527 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 602 (773)
... +.|..++|||||||+|||++|||++ .+|+|++.+||++|++||+++... ++
T Consensus 450 ~~~----------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~~------------~~ 507 (1354)
T 3lxu_X 450 FTM----------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYV------------DP 507 (1354)
T ss_dssp -----------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTTS------------CT
T ss_pred CCC----------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCCC------------Cc
Confidence 322 6799999999999999999999986 799999999999999999998653 56
Q ss_pred CCCCcccccccccCCCceeecCCchhhhccccccCCCcc-eeeeeeccCCCCccCCCCCCCCCCCCCCCCeEEEeccCCC
Q 004113 603 YDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLS-KIKMIATTIPKDFACPKDSGVDSISNINYPSIAVSSFDGK 681 (773)
Q Consensus 603 ~~~G~G~id~~~A~~~~lv~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~ 681 (773)
+.||+|+||+.+|++..+.++..+.+++.|.|..+.+.. .|.+ . +.. ...
T Consensus 508 ~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIyl--R------------------~~~--------~~~- 558 (1354)
T 3lxu_X 508 FAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHL--R------------------QGV--------QRN- 558 (1354)
T ss_dssp TTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEEE--C------------------SSC--------CCS-
T ss_pred ccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceEE--e------------------ccc--------cCC-
Confidence 789999999999999999999999999999999875322 1111 0 000 011
Q ss_pred ccEEEEEEEE----eccC--CC-CeE--EEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCcEEEEEEE
Q 004113 682 EGRTISRTVT----NVAG--NN-ETI--YTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITW 752 (773)
Q Consensus 682 ~~~~~~~tvt----n~~~--~~-~~t--y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~l~~ 752 (773)
...|+++|+ |... .. ... -++.+.... --|++ |+.|.+ .++.++|.|.|+... ...+..++.|..
T Consensus 559 -~~~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~-~wv~~-p~~l~l--~~~~r~~~v~vDp~~-L~~G~h~~~v~~ 632 (1354)
T 3lxu_X 559 -SIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQ-PWVQC-GAFLDL--SYGTRSIAVRVDPTG-LQPGVHSAVIRA 632 (1354)
T ss_dssp -CEEEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESS-TTEEE-CSCEEC--TTSCEEEEEEECGGG-CCSEEEEEEEEE
T ss_pred -ceEEEEEEeeeecCcccCChhhccceEEEEEEecCC-Cceec-ccceee--cCCCceEEEEECCCC-CCCcceeEEEEE
Confidence 233333331 1110 11 111 222222211 13333 777876 467789999999875 455778899987
Q ss_pred EC-----CceeEEEEEEEEe
Q 004113 753 SN-----GKYKVRSLFVVSS 767 (773)
Q Consensus 753 ~~-----~~~~v~~P~~~~~ 767 (773)
.| -.+..|+||-|..
T Consensus 633 ~D~~~~~~gp~f~ipvTv~~ 652 (1354)
T 3lxu_X 633 YDTDCVQKGSLFEIPVTVVQ 652 (1354)
T ss_dssp EESSCTTSCCSEEEEEEEEE
T ss_pred EEcCCcccCceEEeeEEEEe
Confidence 65 2589999998753
No 25
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Probab=100.00 E-value=4.3e-48 Score=420.64 Aligned_cols=289 Identities=22% Similarity=0.288 Sum_probs=219.1
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcc-----cCCce---eEeeeeccccccc-
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSF-----SCNRK---IIGARFYDIEDDV- 199 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~-----~~n~k---i~~~~~~~~~~~~- 199 (773)
.+|+.+++|+||+||||||||+ +||+|.+.-.. .| +|... ..+.+ -....++.+.+..
T Consensus 23 ~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~--------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 89 (340)
T 3lpc_A 23 KVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GY--------DFISNSQISLDGDGRDADPFDEGDWFDNWACG 89 (340)
T ss_dssp HHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CE--------ECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTS
T ss_pred HHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----Cc--------cccCCccccccCCCccCCcccccccccccccc
Confidence 6999999999999999999998 99999753211 11 11000 00000 0000000000000
Q ss_pred --cCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh----
Q 004113 200 --VANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA---- 273 (773)
Q Consensus 200 --~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~---- 273 (773)
..+.....|..||||||||||+|...++. .+.||||+|+|+.+|++... ++..++++++|+|+++
T Consensus 90 ~~~~~~~~~~d~~gHGT~vAgiia~~~~~~~--------g~~GvAp~a~l~~~~v~~~~-~~~~~~~~~ai~~a~~~~~~ 160 (340)
T 3lpc_A 90 GRPDPRKERSDSSWHGSHVAGTIAAVTNNRI--------GVAGVAYGAKVVPVRALGRC-GGYDSDISDGLYWAAGGRIA 160 (340)
T ss_dssp CTTCGGGSCBCCCCHHHHHHHHHHCCCSSSS--------SCCCTTTTSEEEEEECCBTT-BCCHHHHHHHHHHHHTCCCT
T ss_pred CCCCcccCCCCCCCCHHHHHHHHHccCCCCC--------cceeecCCCEEEEEEEecCC-CCcHHHHHHHHHHHhccccc
Confidence 01112356889999999999999864432 35899999999999999887 4788999999999998
Q ss_pred ------CCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCcEEEEcccccCccee
Q 004113 274 ------DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG-SVVNFAPWIFTVAASTIDRDFE 346 (773)
Q Consensus 274 ------~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~ 346 (773)
.+++|||||||... .....+..++.++.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 161 ~~~~~~~~~~Vin~S~G~~~-----~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----- 230 (340)
T 3lpc_A 161 GIPENRNPAKVINMSLGSDG-----QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTS----- 230 (340)
T ss_dssp TSCCCSSCCSEEEECCCEES-----CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECT-----
T ss_pred ccccccCCCeEEEeCcCCCC-----CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCC-----
Confidence 89999999999754 13456777888999999999999999986543 34556789999998532
Q ss_pred eEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcc
Q 004113 347 SDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDG 426 (773)
Q Consensus 347 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~ 426 (773)
T Consensus 231 -------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 231 -------------------------------------------------------------------------------- 230 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCC
Q 004113 427 VKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLT 506 (773)
Q Consensus 427 ~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 506 (773)
.+.++.||++||
T Consensus 231 ----------------------------------------------------------------~~~~~~~S~~g~---- 242 (340)
T 3lpc_A 231 ----------------------------------------------------------------RGIRASFSNYGV---- 242 (340)
T ss_dssp ----------------------------------------------------------------TSSBCTTCCBST----
T ss_pred ----------------------------------------------------------------CCCcCCCCCCCC----
Confidence 246789999997
Q ss_pred CCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhh-C---CCCCHHHHHHHHHhcc
Q 004113 507 RNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ-N---PTFSPSEIKSAVMTTA 582 (773)
Q Consensus 507 d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-~---p~ls~~~Ik~~L~~TA 582 (773)
||||+|||++|+++++.... ....+.|..++|||||||+|||++|||+|+ + |.+++++||++|++||
T Consensus 243 ----~~di~ApG~~i~s~~~~~~~-----~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA 313 (340)
T 3lpc_A 243 ----DVDLAAPGQDILSTVDSGTR-----RPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTT 313 (340)
T ss_dssp ----TCCEEEECSSEEEEEESCSS-----SCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTC
T ss_pred ----CceEEecCCCeecccCCCCc-----CCCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcC
Confidence 56999999999999876321 111245999999999999999999999998 5 9999999999999999
Q ss_pred cccCCCCCccccCCCCCCCCCCCCcccccccccCCC
Q 004113 583 TQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQP 618 (773)
Q Consensus 583 ~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 618 (773)
+++... ++..||+|+||+.+|++.
T Consensus 314 ~~~~~~------------~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 314 SPFNGR------------LDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp BCCSSC------------CSSCCCSSBCCHHHHHHH
T ss_pred CcCCCC------------CCCCcccceecHHHHHHH
Confidence 987543 567999999999999874
No 26
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}
Probab=100.00 E-value=3.4e-47 Score=400.73 Aligned_cols=252 Identities=29% Similarity=0.363 Sum_probs=208.9
Q ss_pred ccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeec
Q 004113 114 FLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFY 193 (773)
Q Consensus 114 ~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~ 193 (773)
.|++........+...+|..+++|+||+|||||||||++||+|.++ +...++|
T Consensus 7 ~W~l~~i~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~---------------------------~~~~~d~ 59 (278)
T 2b6n_A 7 TWGIDRIDQRNLPLDNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR---------------------------ASSGYDF 59 (278)
T ss_dssp CHHHHHHTCSSSSCCSEEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEET
T ss_pred CCCccccCCccCCcchhcccCCCCCCCEEEEEeCCCCCCChhHhcc---------------------------cccCeec
Confidence 4555554444445567899999999999999999999999999742 3334455
Q ss_pred cccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh
Q 004113 194 DIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA 273 (773)
Q Consensus 194 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~ 273 (773)
.++. ..+.|..+|||||||||+|.. .||||+|+|+.+|++++.+.+..++++++|+|+++
T Consensus 60 ~~~~------~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~ 119 (278)
T 2b6n_A 60 IDND------YDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKN 119 (278)
T ss_dssp TTTB------SCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHH
T ss_pred CCCC------CCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHh
Confidence 4332 346789999999999999863 69999999999999988767888999999999997
Q ss_pred --CCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCcEEEEcccccCcceeeEEE
Q 004113 274 --DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG-SVVNFAPWIFTVAASTIDRDFESDIV 350 (773)
Q Consensus 274 --~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~ 350 (773)
.+++|||||||... ...+..++.++.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 120 ~~~g~~Vin~S~G~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------- 183 (278)
T 2b6n_A 120 NASGPAVANMSLGGGA-------SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS--------- 183 (278)
T ss_dssp HCCSSEEEEECCCEEC-------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------
T ss_pred CCCCCeEEEECCCCCc-------CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC---------
Confidence 59999999999754 256777888999999999999999996543 23556789999998532
Q ss_pred ECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccC
Q 004113 351 LGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSL 430 (773)
Q Consensus 351 ~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~ 430 (773)
T Consensus 184 -------------------------------------------------------------------------------- 183 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------- 183 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCc
Q 004113 431 GGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNIL 510 (773)
Q Consensus 431 Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~i 510 (773)
.+.++.||++||.
T Consensus 184 ------------------------------------------------------------~~~~~~~S~~G~~------- 196 (278)
T 2b6n_A 184 ------------------------------------------------------------NDSRSSFSNYGTC------- 196 (278)
T ss_dssp ------------------------------------------------------------TSBBCTTCCBSTT-------
T ss_pred ------------------------------------------------------------CCCcCCcCCCCCC-------
Confidence 1367899999985
Q ss_pred cCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccC
Q 004113 511 KPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTN 586 (773)
Q Consensus 511 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~ 586 (773)
|||+|||++|++++.... +.|..++|||||||||||++|||+|++|+|++++||++|++||++..
T Consensus 197 -~di~ApG~~i~s~~~~~~----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 197 -LDIYAPGSSITSSWYTSN----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADK 261 (278)
T ss_dssp -CCEEEECSSEEEECTTST----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred -CeEEeCCCCeECcccCCC----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC
Confidence 499999999999986522 67999999999999999999999999999999999999999998754
No 27
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}
Probab=100.00 E-value=4.2e-47 Score=400.21 Aligned_cols=254 Identities=26% Similarity=0.315 Sum_probs=211.5
Q ss_pred ccccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeee
Q 004113 112 WDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGAR 191 (773)
Q Consensus 112 ~~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~ 191 (773)
+..|++.......++...+|..+.+|+||+|||||||||++||+|.++ +...+
T Consensus 5 ~~~W~l~~i~~~~~~~~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~ 57 (276)
T 4dzt_A 5 PAPWGLDRIDQRDLPLSNSYTYTATGRGVNVYVIDTGIRTTHREFGGR---------------------------ARVGY 57 (276)
T ss_dssp SCCHHHHHHTSSSSSCCSCEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEE
T ss_pred CCCCChhhcCCccCCcccceecCCCCCCcEEEEEccCCCCCChhHccC---------------------------eeccc
Confidence 344555544434455567999999999999999999999999999742 33334
Q ss_pred eccccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHH
Q 004113 192 FYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDA 271 (773)
Q Consensus 192 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a 271 (773)
++.. ....|..||||||||||+|.. .||||+|+|+.+|++...+.....+++++++|+
T Consensus 58 ~~~~--------~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~ 115 (276)
T 4dzt_A 58 DALG--------GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWV 115 (276)
T ss_dssp ETTS--------SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred cCCC--------CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHH
Confidence 4432 345678999999999999873 799999999999999988778999999999999
Q ss_pred hhC--CCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc-ccCCCcEEEEcccccCcceeeE
Q 004113 272 IAD--GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSV-VNFAPWIFTVAASTIDRDFESD 348 (773)
Q Consensus 272 ~~~--g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~-~~~~p~vitVga~~~~~~~~~~ 348 (773)
+++ +++|||||||... ...+..++.++.++|+++|+||||+|...... +...+++|+|||++.
T Consensus 116 ~~~~~~~~vin~S~g~~~-------~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------- 181 (276)
T 4dzt_A 116 TRNHRRPAVANMSLGGGV-------STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS------- 181 (276)
T ss_dssp HHHCCSSEEEEECCCEEC-------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------
T ss_pred HhcCCCCeEEEECCCCCC-------CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC-------
Confidence 986 8999999999754 36777888999999999999999999654333 556788999988532
Q ss_pred EEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccc
Q 004113 349 IVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVK 428 (773)
Q Consensus 349 ~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~ 428 (773)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCC
Q 004113 429 SLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRN 508 (773)
Q Consensus 429 ~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~ 508 (773)
.+.++.||++||..
T Consensus 182 --------------------------------------------------------------~~~~~~~S~~g~~~---- 195 (276)
T 4dzt_A 182 --------------------------------------------------------------SDARASFSNYGSCV---- 195 (276)
T ss_dssp --------------------------------------------------------------TSBBCTTCCBSTTC----
T ss_pred --------------------------------------------------------------CCCcCCcCCCCCCc----
Confidence 24778999999976
Q ss_pred CccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCC
Q 004113 509 ILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNL 588 (773)
Q Consensus 509 ~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~ 588 (773)
||+|||++|.+++.... ..|..++|||||||+|||++|||+|++|++++++||++|++||++....
T Consensus 196 ----dv~ApG~~i~s~~~~~~----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~ 261 (276)
T 4dzt_A 196 ----DLFAPGASIPSAWYTSD----------TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRLS 261 (276)
T ss_dssp ----CEEEECSSEEEECTTSS----------SCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCCB
T ss_pred ----eEEeCCCCeEccccCCC----------CceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCccC
Confidence 99999999999987632 5899999999999999999999999999999999999999999987654
No 28
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ...
Probab=100.00 E-value=8.3e-47 Score=397.23 Aligned_cols=241 Identities=27% Similarity=0.352 Sum_probs=203.0
Q ss_pred CCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCC
Q 004113 130 SLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDM 209 (773)
Q Consensus 130 ~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~ 209 (773)
.|. ..+|+||+|+|||||||++||+|.+. +...++|. ..+.|.
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~---------------------------~~~~~~~~---------~~~~d~ 66 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYY---------YSSRDG 66 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESS---------SCSSCS
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc---------------------------cccccCCC---------CCCCCC
Confidence 343 47899999999999999999999742 23334443 135678
Q ss_pred CCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCC-------cEEEec
Q 004113 210 VGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGV-------DVLSLS 282 (773)
Q Consensus 210 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~-------dVIN~S 282 (773)
.+|||||||||+|.. .||||+|+|+.+|+++..+.+..++++++|+|++++++ +|||||
T Consensus 67 ~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S 132 (279)
T 2pwa_A 67 NGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLS 132 (279)
T ss_dssp SSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEEC
T ss_pred CCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEEec
Confidence 999999999999863 79999999999999998866889999999999999887 999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCcEEEEcccccCcceeeEEEECCceEEeeee
Q 004113 283 LGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG-SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGES 361 (773)
Q Consensus 283 lG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~ 361 (773)
||... .+.+..++.++.++|++||+||||+|.... ..+...|++|+|||++.
T Consensus 133 ~G~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------------------- 185 (279)
T 2pwa_A 133 LGGGY-------SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR-------------------- 185 (279)
T ss_dssp CCEEC-------CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT--------------------
T ss_pred CCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecC--------------------
Confidence 99653 367778889999999999999999997543 24556789999998532
Q ss_pred eccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCC
Q 004113 362 INFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQ 441 (773)
Q Consensus 362 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~ 441 (773)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 2pwa_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccE
Q 004113 442 SRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNI 521 (773)
Q Consensus 442 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I 521 (773)
.+.++.||++||.. ||+|||++|
T Consensus 186 -------------------------------------------------~~~~~~~S~~G~~~--------di~APG~~i 208 (279)
T 2pwa_A 186 -------------------------------------------------YDRRSSFSNYGSVL--------DIFGPGTDI 208 (279)
T ss_dssp -------------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSE
T ss_pred -------------------------------------------------CCCcCCcCCCCCcc--------eEEEecCCe
Confidence 13678999999964 999999999
Q ss_pred EeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCC
Q 004113 522 LAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAAT 601 (773)
Q Consensus 522 ~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 601 (773)
+++++. +.|..++|||||||||||++|||+|+ |++++.+||++|++||++...
T Consensus 209 ~s~~~~------------~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~-------------- 261 (279)
T 2pwa_A 209 LSTWIG------------GSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL-------------- 261 (279)
T ss_dssp EEEETT------------TEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC--------------
T ss_pred EEeecC------------CCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc--------------
Confidence 999987 78999999999999999999999999 999999999999999998643
Q ss_pred CCCCCccccccc
Q 004113 602 PYDFGAGEVSTT 613 (773)
Q Consensus 602 ~~~~G~G~id~~ 613 (773)
..+|+|..|+.
T Consensus 262 -~~~~~g~~n~l 272 (279)
T 2pwa_A 262 -SNIPFGTVNLL 272 (279)
T ss_dssp -BSCCTTSCCEE
T ss_pred -CCCCCCCccEe
Confidence 24677777763
No 29
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} PDB: 3hjr_A
Probab=100.00 E-value=1.8e-46 Score=436.55 Aligned_cols=299 Identities=17% Similarity=0.162 Sum_probs=203.8
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 127 PSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 127 ~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
...+|..+++|+||+|||||||||++||+|.+.-. .+.++|..+. +...+
T Consensus 59 ~~~aw~~g~~G~gV~VaViDtGid~~Hpdl~~~~~--------------------------~~~~~~~~~~----~d~~p 108 (600)
T 2oxa_A 59 LWWAHRTGVLGHGVNVAVVDDGLAIAHPDLADNVR--------------------------PGSKNVVTGS----DDPTP 108 (600)
T ss_dssp CHHHHHTTCSCTTCEEEEESSCCCTTCTTTGGGBC--------------------------SCCBCTTTCS----SCCCC
T ss_pred hHHHHhcCCCCCCcEEEEecCCcCCCCcchhhccc--------------------------cCceeccCCC----CCCCC
Confidence 35789999999999999999999999999975310 1122333221 11233
Q ss_pred CC-CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCC-HHHHHHHHHHHhhCCCcEEEeccC
Q 004113 207 RD-MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCT-GSNILAAFDDAIADGVDVLSLSLG 284 (773)
Q Consensus 207 ~d-~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~-~~~i~~ai~~a~~~g~dVIN~SlG 284 (773)
.| ..||||||||||||. .+ +..+.||||+|+|+.+|+++..+... ...+++....+..++++|||||||
T Consensus 109 ~d~~~gHGT~vAGiiaa~-~n--------~~g~~GVAp~A~l~~vkv~~~~~~~~~~~~~~~~~~~a~~~~~~Vin~S~G 179 (600)
T 2oxa_A 109 TDPDTGHGTSVSGIIAAV-DN--------AIGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNHSYR 179 (600)
T ss_dssp CSTTCCHHHHHHHHHHCC-SS--------SSSCCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTTSHHHHTCSEEEECCC
T ss_pred CCCCCCCccHHHHHhhcc-cC--------CCcceEEccCCceEEEeeecCcccchHHHHHHHHhhhhcccCCeEEEEecc
Confidence 44 789999999999998 33 23358999999999999998773332 233444444467789999999999
Q ss_pred CCCCCCCCCCC----cHHHHHHHH---HHhCCcEEEEecCCCCCCCCC----------------------cccCCCcEEE
Q 004113 285 GSAGIVRPLTD----DPIALGAFH---AVEHGITVVCSAGNDGPSSGS----------------------VVNFAPWIFT 335 (773)
Q Consensus 285 ~~~~~~~~~~~----~~~~~~~~~---a~~~Gi~vV~aAGN~g~~~~~----------------------~~~~~p~vit 335 (773)
.... ..... ..+..++.. +.++|++||+||||+|..... ..+.++|+|+
T Consensus 180 ~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~GilvV~AAGN~g~~~~~~~~~~~Pa~~~~~~p~~~~n~~~~~~s~~vIt 257 (600)
T 2oxa_A 180 MSVV--DPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENSNLDPSNSNFWNLV 257 (600)
T ss_dssp CCCS--SCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESCSSCCCSSBTTSSGGGGSSSEEE
T ss_pred CCCC--CccccCchhHHHHHHHHHHHHhccCCcEEEEecCCCCccCCCCcceecCccccccccccccccCCcccCceeEE
Confidence 8642 12222 222222222 447899999999999863210 0111233444
Q ss_pred EcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCC
Q 004113 336 VAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDD 415 (773)
Q Consensus 336 Vga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~ 415 (773)
|||+
T Consensus 258 VgA~---------------------------------------------------------------------------- 261 (600)
T 2oxa_A 258 VSAL---------------------------------------------------------------------------- 261 (600)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred Eecc----------------------------------------------------------------------------
Confidence 4432
Q ss_pred CCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccc
Q 004113 416 DMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIA 495 (773)
Q Consensus 416 ~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 495 (773)
...+.++
T Consensus 262 -------------------------------------------------------------------------~~~g~~a 268 (600)
T 2oxa_A 262 -------------------------------------------------------------------------NADGVRS 268 (600)
T ss_dssp -------------------------------------------------------------------------CTTSSBC
T ss_pred -------------------------------------------------------------------------cCCCCcC
Confidence 1235789
Q ss_pred cccCCCCCCCCCCCccCceEeCCccEEeeecC-------CCC--CC--------CC-----CCCCCCcceeeccccchhh
Q 004113 496 YFSARGPSPLTRNILKPDITAPGVNILAAWMG-------NDT--GE--------AP-----EGKEPPLFNVISGTSMSCP 553 (773)
Q Consensus 496 ~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~-------~~~--~~--------~~-----~~~~~~~y~~~sGTSmAaP 553 (773)
.||++||+. ||+|||++|.+..+. ... .. .. .+...+.|..++|||||||
T Consensus 269 ~fS~~G~~v--------dv~APG~~i~~~~p~i~ttd~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP 340 (600)
T 2oxa_A 269 SYSSVGSNI--------FLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATP 340 (600)
T ss_dssp TTCCBCTTE--------EEEEECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHH
T ss_pred CcCCCCCCe--------EEEeccCCCCcCCCceEeccccccccccccccccccccccccccccCCcccccccccchHHhH
Confidence 999999987 999999985443221 000 00 00 1112245899999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCcc--------------------ccCCCCCCCCCCCCccccccc
Q 004113 554 HISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPI--------------------TTNSGAAATPYDFGAGEVSTT 613 (773)
Q Consensus 554 ~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~--------------------~~~~~~~~~~~~~G~G~id~~ 613 (773)
||||++|||+|++|+|++++||++|++||++++..+.++ .........++.||||+||+.
T Consensus 341 ~VAGvaALl~s~~P~lt~~~vk~~L~~tA~~~~~~~~~~~~~~~~~~G~~~~~~~~~~w~~n~~g~~~~~~~G~G~vda~ 420 (600)
T 2oxa_A 341 STSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVN 420 (600)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCcccccccccccccccccccccccccccccCCCccccccCCCchhhHH
Confidence 999999999999999999999999999999987654221 111223335678999999999
Q ss_pred ccCCCceeec
Q 004113 614 ASLQPGLVYE 623 (773)
Q Consensus 614 ~A~~~~lv~~ 623 (773)
+|++.+..+.
T Consensus 421 ~Av~~A~~~~ 430 (600)
T 2oxa_A 421 KALELAANHQ 430 (600)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHhcc
Confidence 9999655443
No 30
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1
Probab=100.00 E-value=3.4e-46 Score=421.91 Aligned_cols=297 Identities=16% Similarity=0.134 Sum_probs=218.1
Q ss_pred CCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCC
Q 004113 125 SVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQ 204 (773)
Q Consensus 125 ~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~ 204 (773)
+....+|..+++|+||+|||||||||++||+|.+.-. . ...++|.+......+..
T Consensus 25 i~~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~------------~-------------~~~~d~~~~~~~p~~~~ 79 (471)
T 1p8j_A 25 LNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD------------P-------------GASFDVNDQDPDPQPRY 79 (471)
T ss_dssp CCCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC------------G-------------GGCEETTTTBSCCCCCC
T ss_pred CChHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC------------c-------------cCcccccCCCCCCCCcc
Confidence 3345799999999999999999999999999985310 0 01122322211000112
Q ss_pred CCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh-CCCcEEEecc
Q 004113 205 SPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA-DGVDVLSLSL 283 (773)
Q Consensus 205 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~-~g~dVIN~Sl 283 (773)
...|..+|||||||||+|...++ ..+.||||+|+|+.+|+++ +..+++++|++++++ ++++||||||
T Consensus 80 ~~~d~~gHGT~vAGiiaa~~~n~--------~g~~GvAp~a~i~~~rv~~----g~~~~~~~ai~~a~~~~~~~Vin~S~ 147 (471)
T 1p8j_A 80 TQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLD----GEVTDAVEARSLGLNPNHIHIYSASW 147 (471)
T ss_dssp CTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSS----SCCCHHHHHHHHTSCTTTCCEEEECC
T ss_pred CCCCCCCcHHHHHHHHHeeccCC--------CCCEEECCCCeEEEEEccC----CchhHHHHHHHhhhccCCCeEEEecc
Confidence 34678999999999999976432 2358999999999999985 346789999999999 9999999999
Q ss_pred CCCCCCC-CCCCCcHHHHHHHHHH-----hCCcEEEEecCCCCCCCCCc----ccCCCcEEEEcccccCcceeeEEEECC
Q 004113 284 GGSAGIV-RPLTDDPIALGAFHAV-----EHGITVVCSAGNDGPSSGSV----VNFAPWIFTVAASTIDRDFESDIVLGG 353 (773)
Q Consensus 284 G~~~~~~-~~~~~~~~~~~~~~a~-----~~Gi~vV~aAGN~g~~~~~~----~~~~p~vitVga~~~~~~~~~~~~~g~ 353 (773)
|...... .......+..++.++. .+|++||+||||+|...... ...++++|+|||++.
T Consensus 148 G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~------------ 215 (471)
T 1p8j_A 148 GPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ------------ 215 (471)
T ss_dssp BSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT------------
T ss_pred CcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC------------
Confidence 9864210 0112233444555554 36999999999999653221 123578999998542
Q ss_pred ceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCce
Q 004113 354 NKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGV 433 (773)
Q Consensus 354 ~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~ 433 (773)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCc
Q 004113 434 GVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPD 513 (773)
Q Consensus 434 g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPD 513 (773)
.+.++.||++||.. +...+|.
T Consensus 216 ---------------------------------------------------------~g~~a~~S~~g~~~--~~~~~~~ 236 (471)
T 1p8j_A 216 ---------------------------------------------------------FGNVPWYSEACSST--LATTYSS 236 (471)
T ss_dssp ---------------------------------------------------------TSCCCTTCCBCTTC--CEEEECC
T ss_pred ---------------------------------------------------------CCCcccccCCCCcc--eEEeCCC
Confidence 14678999999987 3445566
Q ss_pred eEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccc
Q 004113 514 ITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPIT 593 (773)
Q Consensus 514 I~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~ 593 (773)
..+||..|+++.... +.|..++|||||||||||++|||+|++|+|++++||++|++||+++......+.
T Consensus 237 ~~~~g~~i~st~~~~-----------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~ 305 (471)
T 1p8j_A 237 GNQNEKQIVTTDLRQ-----------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWA 305 (471)
T ss_dssp CSTTSCCEEEEETTT-----------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCE
T ss_pred CCCCCCCEEEeeCCC-----------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCce
Confidence 666678999998641 568999999999999999999999999999999999999999999875433222
Q ss_pred cCCCCCCCCCCCCcccccccccCCCce
Q 004113 594 TNSGAAATPYDFGAGEVSTTASLQPGL 620 (773)
Q Consensus 594 ~~~~~~~~~~~~G~G~id~~~A~~~~l 620 (773)
........+..||||+||+.+|++...
T Consensus 306 ~n~~g~~~~~~~G~G~vda~~Av~~a~ 332 (471)
T 1p8j_A 306 TNGVGRKVSHSYGYGLLDAGAMVALAQ 332 (471)
T ss_dssp ECTTSCEEBTTTBTCBCCHHHHHHHHH
T ss_pred ecCCCcccCCCCCCEEEcHhHHHHHhh
Confidence 222222356799999999999998544
No 31
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A*
Probab=100.00 E-value=1.8e-45 Score=418.82 Aligned_cols=287 Identities=16% Similarity=0.138 Sum_probs=216.4
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 127 PSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 127 ~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
...+|..+++|+||+|||||||||++||+|.+.- +. .+.++|.++.. +....
T Consensus 43 ~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~-------~~------------------~~~~d~~~~~~---~~~p~ 94 (503)
T 2id4_A 43 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------CA------------------EGSWDFNDNTN---LPKPR 94 (503)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------CG------------------GGCEETTTTBS---CCCCC
T ss_pred hHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc-------cc------------------cCcccCCCCCC---CCCCC
Confidence 3468999999999999999999999999998531 00 01233333221 11223
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCC
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGS 286 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 286 (773)
.|..+|||||||||+|...++ ..+.||||+|+|+.+|+++. .....++++||+|+++++ +|||||||..
T Consensus 95 ~d~~gHGT~vAGiiaa~~~n~--------~~~~GvAp~a~i~~~rv~~~--~~~~~~~~~ai~~a~~~~-~Iin~S~G~~ 163 (503)
T 2id4_A 95 LSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG--DITTEDEAASLIYGLDVN-DIYSCSWGPA 163 (503)
T ss_dssp STTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS--CCCHHHHHHHTTTTTTTC-SEEEECEESC
T ss_pred CCCCChHHHHHHHHHhccCCC--------CCcEEECCCCEEEEEEeeCC--CCChHHHHHHHHhHhhcC-CEEEeCCCcC
Confidence 578899999999999976443 22489999999999999974 367889999999999998 9999999986
Q ss_pred CCCC-CCCCCcHHHHHHHHHH-----hCCcEEEEecCCCCCCCCC--ccc--CCCcEEEEcccccCcceeeEEEECCceE
Q 004113 287 AGIV-RPLTDDPIALGAFHAV-----EHGITVVCSAGNDGPSSGS--VVN--FAPWIFTVAASTIDRDFESDIVLGGNKV 356 (773)
Q Consensus 287 ~~~~-~~~~~~~~~~~~~~a~-----~~Gi~vV~aAGN~g~~~~~--~~~--~~p~vitVga~~~~~~~~~~~~~g~~~~ 356 (773)
.... .......+..++.++. .+|++||+||||+|..... .+. .++++|+|||++.
T Consensus 164 ~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~--------------- 228 (503)
T 2id4_A 164 DDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH--------------- 228 (503)
T ss_dssp CSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT---------------
T ss_pred CCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCC---------------
Confidence 4210 1112344566666665 4799999999999965332 222 3578999988532
Q ss_pred EeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEE
Q 004113 357 IKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVI 436 (773)
Q Consensus 357 ~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i 436 (773)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEe
Q 004113 437 VIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITA 516 (773)
Q Consensus 437 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~A 516 (773)
.+.++.||++||.. |++|
T Consensus 229 ------------------------------------------------------~~~~a~~S~~g~~~--------~~~a 246 (503)
T 2id4_A 229 ------------------------------------------------------KDLHPPYSEGCSAV--------MAVT 246 (503)
T ss_dssp ------------------------------------------------------TSCCCTTCCCCTTE--------EEEE
T ss_pred ------------------------------------------------------CCCcCCcCCCCCcc--------eEee
Confidence 13678999999987 8887
Q ss_pred ----CCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCC-CCc
Q 004113 517 ----PGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNL-RAP 591 (773)
Q Consensus 517 ----PG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~-g~~ 591 (773)
||..|+++... .+.|..++|||||||||||++|||+|++|+|++++||++|++||+++... ...
T Consensus 247 ~~~gpG~~I~st~~~-----------~~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~ 315 (503)
T 2id4_A 247 YSSGSGEYIHSSDIN-----------GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGD 315 (503)
T ss_dssp ECSBTTBCEEEECST-----------TCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGC
T ss_pred cCCCCCCceEeecCC-----------CCceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCC
Confidence 89999999543 17899999999999999999999999999999999999999999988654 211
Q ss_pred cccCCCCCCCCCCCCcccccccccCCCce
Q 004113 592 ITTNSGAAATPYDFGAGEVSTTASLQPGL 620 (773)
Q Consensus 592 ~~~~~~~~~~~~~~G~G~id~~~A~~~~l 620 (773)
+.........+..||||+||+.+|++...
T Consensus 316 ~~~~~~g~~~~~~~G~G~vda~~Av~~a~ 344 (503)
T 2id4_A 316 WRDSAMGKKYSHRYGFGKIDAHKLIEMSK 344 (503)
T ss_dssp CEECSSSSEEBTTTBTCBCCHHHHHHHHT
T ss_pred ceecCCCCccCcccCCcEecHHHHHHHHh
Confidence 21111122345689999999999998544
No 32
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Probab=100.00 E-value=6.3e-45 Score=406.80 Aligned_cols=291 Identities=19% Similarity=0.186 Sum_probs=205.8
Q ss_pred cCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeecc
Q 004113 115 LKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYD 194 (773)
Q Consensus 115 ~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~ 194 (773)
|+|++..+...+. ..|..+.+|+||+|+|||||||++||+|.++. + ..+...+.
T Consensus 4 WgL~rI~~~~~~~-~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~-------~------------------~~~~~~v~ 57 (546)
T 2qtw_B 4 WNLERITPPRYRA-DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV-------M------------------VTDFENVP 57 (546)
T ss_dssp HHHHHTSCSSCC---------CCTTSEEEEEESCCCTTSTTTTTTE-------E------------------EEEEECCC
T ss_pred CChhhcCCCcccc-hhcccCCCCCCcEEEEECCCCCCCChHHcccc-------c------------------ccCccccc
Confidence 4454443222222 47888999999999999999999999998531 0 00111111
Q ss_pred ccccccCC-CCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh
Q 004113 195 IEDDVVAN-GQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA 273 (773)
Q Consensus 195 ~~~~~~~~-~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~ 273 (773)
+.+. .+ .....|..||||||||||+|+. .||||+|+|+.+|+++..+....+++++||+|+++
T Consensus 58 ~~dg--~~f~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~ 121 (546)
T 2qtw_B 58 EEDG--TRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRK 121 (546)
T ss_dssp CCC---------CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHH
T ss_pred CCCC--ccccCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHH
Confidence 1000 00 0235678999999999999873 69999999999999988766788999999999997
Q ss_pred ------CCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCcEEEEcccccCccee
Q 004113 274 ------DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG-SVVNFAPWIFTVAASTIDRDFE 346 (773)
Q Consensus 274 ------~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~ 346 (773)
.+++|||||||+.. ...+..++.++.++|++||+||||+|.+.. ..+...|++|+|||++.+...
T Consensus 122 ~~~~~~~g~~VINmSlGg~~-------s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~- 193 (546)
T 2qtw_B 122 SQLVQPVGPLVVLLPLAGGY-------SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP- 193 (546)
T ss_dssp HHHHSCCSCEEEEECEEEEC-------CHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB-
T ss_pred hhhhccCCCeEEEecCCCCC-------cHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc-
Confidence 48999999999643 367778889999999999999999997542 235567999999996542100
Q ss_pred eEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcc
Q 004113 347 SDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDG 426 (773)
Q Consensus 347 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~ 426 (773)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCC
Q 004113 427 VKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLT 506 (773)
Q Consensus 427 ~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 506 (773)
...-..||++||
T Consensus 194 ----------------------------------------------------------------a~~s~~fSn~G~---- 205 (546)
T 2qtw_B 194 ----------------------------------------------------------------VTLGTLGTNFGR---- 205 (546)
T ss_dssp ----------------------------------------------------------------CEETTEECCBST----
T ss_pred ----------------------------------------------------------------ccccCCcCCCCC----
Confidence 000112899997
Q ss_pred CCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccC
Q 004113 507 RNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTN 586 (773)
Q Consensus 507 d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~ 586 (773)
||||+|||++|+++++... +.|..++|||||||||||++|||+|++|+|++++||++|++||.+..
T Consensus 206 ----~vDI~APG~~I~St~~~~~----------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~ 271 (546)
T 2qtw_B 206 ----CVDLFAPGEDIIGASSDCS----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDV 271 (546)
T ss_dssp ----TCCEEEECSSEEEECTTST----------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESC
T ss_pred ----cceEEecCccEEeeccCCC----------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccc
Confidence 4599999999999987632 57999999999999999999999999999999999999999998754
Q ss_pred CCCCccc------cCC---CCCCCCCCCCccc--ccccccCC
Q 004113 587 NLRAPIT------TNS---GAAATPYDFGAGE--VSTTASLQ 617 (773)
Q Consensus 587 ~~g~~~~------~~~---~~~~~~~~~G~G~--id~~~A~~ 617 (773)
.....+. ... ........+|+|+ .++..+..
T Consensus 272 i~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 272 INEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp SCGGGSCHHHHTTSCCEECCCCCTTCC--CCCEEEEEECCCC
T ss_pred cCCccCccccCCCCccchhccCCcccccCCCcchhchhccCC
Confidence 3221110 000 0111345678888 77777665
No 33
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A
Probab=100.00 E-value=5.7e-45 Score=384.56 Aligned_cols=232 Identities=29% Similarity=0.368 Sum_probs=197.3
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
..|+.. +|+||+|||||||||++||+|.+ ++...++|.. ...|
T Consensus 24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~---------------------------~~~~~~~~~~---------~~~d 66 (279)
T 3f7m_A 24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEG---------------------------RAKQIKSYAS---------TARD 66 (279)
T ss_dssp EEECTT-TTTTEEEEEEESCCCTTCGGGTT---------------------------CEEEEEECSS---------SSSC
T ss_pred eeecCC-CCCCCEEEEEcCCCCCCChhhcc---------------------------ccccccCCCC---------CCCC
Confidence 456555 89999999999999999999974 2334444432 2338
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCC-------CcEEEe
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADG-------VDVLSL 281 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g-------~dVIN~ 281 (773)
..||||||||||+|+. .||||+|+|+.+|+++..+.+..++++++++|+++++ ++||||
T Consensus 67 ~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~ 132 (279)
T 3f7m_A 67 GHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASM 132 (279)
T ss_dssp SSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEE
T ss_pred CCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEe
Confidence 8999999999999863 7999999999999998887789999999999999876 899999
Q ss_pred ccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc-ccCCCcEEEEcccccCcceeeEEEECCceEEeee
Q 004113 282 SLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSV-VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGE 360 (773)
Q Consensus 282 SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~-~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~ 360 (773)
|||... ...+..++.++.++|++||+||||+|...... +...+++|+|||++.
T Consensus 133 S~g~~~-------~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------- 186 (279)
T 3f7m_A 133 SLGGGY-------SAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS------------------- 186 (279)
T ss_dssp CCCEEC-------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------------------
T ss_pred CCCcCc-------cHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC-------------------
Confidence 999643 36778888999999999999999999764333 556789999998532
Q ss_pred eeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeC
Q 004113 361 SINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDD 440 (773)
Q Consensus 361 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~ 440 (773)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 3f7m_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCcc
Q 004113 441 QSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVN 520 (773)
Q Consensus 441 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~ 520 (773)
.+.++.||++||.. ||+|||++
T Consensus 187 --------------------------------------------------~~~~~~~S~~g~~~--------di~ApG~~ 208 (279)
T 3f7m_A 187 --------------------------------------------------NDVRSTFSNYGRVV--------DIFAPGTS 208 (279)
T ss_dssp --------------------------------------------------TSBBCTTCCBSTTC--------CEEEECSS
T ss_pred --------------------------------------------------CCCCCCCCCCCCCC--------eEEECCCC
Confidence 14678999999955 99999999
Q ss_pred EEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCC
Q 004113 521 ILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNL 588 (773)
Q Consensus 521 I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~ 588 (773)
|+++++. +.|..++|||||||+|||++|||+|++|+ ++++||++|++||++....
T Consensus 209 i~s~~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~~~ 263 (279)
T 3f7m_A 209 ITSTWIG------------GRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNVLT 263 (279)
T ss_dssp EEEECGG------------GCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESCCB
T ss_pred eEeecCC------------CCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccccc
Confidence 9999987 78999999999999999999999999999 9999999999999986443
No 34
>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}
Probab=100.00 E-value=3.1e-43 Score=411.00 Aligned_cols=320 Identities=18% Similarity=0.205 Sum_probs=204.1
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 127 PSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 127 ~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
...+|..+++|+||+|||||||||++||||.++- . .+.++|.++.. +....
T Consensus 59 v~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~------------~--------------~~~~~~~~~~~---dp~p~ 109 (600)
T 3hjr_A 59 LWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNV------------R--------------PGSKNVVTGSD---DPTPT 109 (600)
T ss_dssp CHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGB------------C--------------SCCBCTTTSSS---CCCCC
T ss_pred HHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcc------------c--------------cCcceeecCCC---CCCCC
Confidence 3468999999999999999999999999997531 0 11222322221 11233
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHH-HHHhhCCCcEEEeccCC
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAF-DDAIADGVDVLSLSLGG 285 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai-~~a~~~g~dVIN~SlG~ 285 (773)
.|..+|||||||||||.. + +..+.||||+|+|+.+|++++.+....++++.++ +++..++++|||+|||.
T Consensus 110 ~~~~gHGThVAGiIAa~~-n--------~~g~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~ 180 (600)
T 3hjr_A 110 DPDTAHGTSVSGIIAAVD-N--------AIGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGM 180 (600)
T ss_dssp STTCCHHHHHHHHHHCCS-S--------SSSCCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCC
T ss_pred CCCCChHHHHHHHHhEeC-C--------CCCcEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCc
Confidence 467899999999999863 2 2235899999999999999988777888887776 56778899999999997
Q ss_pred CCCCCCCCCCcH-----HHHHHHHH--HhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEe
Q 004113 286 SAGIVRPLTDDP-----IALGAFHA--VEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIK 358 (773)
Q Consensus 286 ~~~~~~~~~~~~-----~~~~~~~a--~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~ 358 (773)
... .....+. +..++..+ ..+|+++|+||||.+....... +.+.+. +++
T Consensus 181 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~------~~~~~~------------g~~---- 236 (600)
T 3hjr_A 181 SVV--DPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG------YVLNRT------------GNG---- 236 (600)
T ss_dssp CCS--SCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT------EEEEEE------------SSC----
T ss_pred ccc--CCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccc------cccccC------------CCC----
Confidence 642 1222222 22222222 2589999999999764211000 000000 000
Q ss_pred eeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEE
Q 004113 359 GESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVI 438 (773)
Q Consensus 359 g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~ 438 (773)
..++ ...|.... +......|.+.
T Consensus 237 ------------~~~~----------------~~~~~~d~--~~~~~~~IsVg--------------------------- 259 (600)
T 3hjr_A 237 ------------PKLP----------------FENSNLDP--SNSNFWNLVVS--------------------------- 259 (600)
T ss_dssp ------------CCCC----------------SSBTTSSG--GGGSSSEEEEE---------------------------
T ss_pred ------------CCCC----------------cccccccC--ccccCcceEEe---------------------------
Confidence 0000 00011000 00000111111
Q ss_pred eCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCC
Q 004113 439 DDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPG 518 (773)
Q Consensus 439 ~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG 518 (773)
.....+.++.||++|+.. +++|||
T Consensus 260 ------------------------------------------------A~~~~g~~a~yS~~G~~v--------~~~apg 283 (600)
T 3hjr_A 260 ------------------------------------------------ALNADGVRSSYSSVGSNI--------FLSATG 283 (600)
T ss_dssp ------------------------------------------------EECTTSSBCTTCCBCTTC--------CEEEEC
T ss_pred ------------------------------------------------eecCCCCEeecccCCcce--------eeccCC
Confidence 112346889999999987 899999
Q ss_pred ccE--------EeeecCCCCC---------CC-----CCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 004113 519 VNI--------LAAWMGNDTG---------EA-----PEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKS 576 (773)
Q Consensus 519 ~~I--------~sa~~~~~~~---------~~-----~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~ 576 (773)
..+ ....++.... .. ........|..++|||||||||||++|||+|++|+|+++|||+
T Consensus 284 ~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~ 363 (600)
T 3hjr_A 284 GEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRD 363 (600)
T ss_dssp CSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHH
T ss_pred CCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHH
Confidence 762 2222211000 00 0122335688999999999999999999999999999999999
Q ss_pred HHHhcccccCCCCCccc--------------------cCCCCCCCCCCCCcccccccccCCCcee
Q 004113 577 AVMTTATQTNNLRAPIT--------------------TNSGAAATPYDFGAGEVSTTASLQPGLV 621 (773)
Q Consensus 577 ~L~~TA~~~~~~g~~~~--------------------~~~~~~~~~~~~G~G~id~~~A~~~~lv 621 (773)
+|++||++++....|+. ...........||||+||+.+|++.+..
T Consensus 364 ~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~A~~ 428 (600)
T 3hjr_A 364 LLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELAAN 428 (600)
T ss_dssp HHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHHTT
T ss_pred HHHhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHHhhc
Confidence 99999999987654422 1111223456899999999999985433
No 35
>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A
Probab=99.91 E-value=4e-25 Score=251.83 Aligned_cols=101 Identities=24% Similarity=0.392 Sum_probs=77.7
Q ss_pred ceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh---CCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEE
Q 004113 236 GTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA---DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITV 312 (773)
Q Consensus 236 ~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~---~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~v 312 (773)
..+.||||+|+|+.|++. ....+++++|+||++ ++++|||||||.........+.+.+..++.+|..+||+|
T Consensus 272 ~~~~gvAp~a~i~~~~~~-----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~v 346 (552)
T 1t1e_A 272 EVAGALAPGAKIAVYFAP-----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTV 346 (552)
T ss_dssp HHHHHHCTTSEEEEEECC-----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEE
T ss_pred hhhhccCCCCeEEEEEcC-----CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEE
Confidence 346899999999999973 245789999999998 799999999998642001111245666777888999999
Q ss_pred EEecCCCCCCC--------CCcccCCCcEEEEccccc
Q 004113 313 VCSAGNDGPSS--------GSVVNFAPWIFTVAASTI 341 (773)
Q Consensus 313 V~aAGN~g~~~--------~~~~~~~p~vitVga~~~ 341 (773)
|+||||+|... ...+...|+|++||+++.
T Consensus 347 v~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 347 LAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp EEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred EEecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 99999999643 234456799999999864
No 36
>1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A*
Probab=99.83 E-value=3.5e-21 Score=209.09 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=79.6
Q ss_pred eeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh-CCCcEEEeccCCCCCC-CCCCCCcHHHHHHHHHHhCCcEEEEec
Q 004113 239 IGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA-DGVDVLSLSLGGSAGI-VRPLTDDPIALGAFHAVEHGITVVCSA 316 (773)
Q Consensus 239 ~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~~-~~~~~~~~~~~~~~~a~~~Gi~vV~aA 316 (773)
..+||+++++.|++.+.. .+..++++.+|+||++ ++++|||||||..... ....+.+.+..++.+|..+||+||+||
T Consensus 90 g~~aP~a~~~~~~~~~~~-~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~As 168 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQS-ASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSS 168 (372)
T ss_dssp HHTTSCEEEEEEEEECTT-SSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hhcCCCCcEEEEEeCCCC-CcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence 447899999999998654 4677899999999998 8999999999975310 001223566777788889999999999
Q ss_pred CCCCCCCC-------------CcccCCCcEEEEcccccC
Q 004113 317 GNDGPSSG-------------SVVNFAPWIFTVAASTID 342 (773)
Q Consensus 317 GN~g~~~~-------------~~~~~~p~vitVga~~~~ 342 (773)
||+|...+ ..+...|++++||+++..
T Consensus 169 Gd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 169 GDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp CSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred CCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 99996532 234567999999998653
No 37
>3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A*
Probab=99.00 E-value=4.7e-10 Score=126.89 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=62.8
Q ss_pred eeccCCceEEEEEeecCCCCCCHHHHHHHHHHHh--hCCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 004113 239 IGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAI--ADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSA 316 (773)
Q Consensus 239 ~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~--~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aA 316 (773)
.++++...++.|..-... .....++..+++.. .+.++|||+|||.........+.+.+...+.++..+||.|++|+
T Consensus 262 ~a~~~~i~~~~~~~~g~~--~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~AS 339 (544)
T 3edy_A 262 MSAGANISTWVYSSPGRH--EGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFAS 339 (544)
T ss_dssp HHHSTTSEEEEECCCSCC--TTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hccCCCceEEEEecCCcc--cccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 445556665555432111 12233444444433 35689999999987521111222445556677889999999999
Q ss_pred CCCCCCC----------CCcccCCCcEEEEccccc
Q 004113 317 GNDGPSS----------GSVVNFAPWIFTVAASTI 341 (773)
Q Consensus 317 GN~g~~~----------~~~~~~~p~vitVga~~~ 341 (773)
||+|... ...+...|||++||+++.
T Consensus 340 GD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 340 GDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp CSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 9999643 134456799999999864
No 38
>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P
Probab=98.90 E-value=1.2e-09 Score=97.57 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=66.3
Q ss_pred CCCCceEEEEeccCCCCCCCchhHHHHHHHHHhcc--cCccEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEecCcee
Q 004113 27 GSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKW--KKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVL 104 (773)
Q Consensus 27 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~~V~~~~~~ 104 (773)
...+++|||+|++.. . ......|.+++.+++.+ ...+++++|++.|+||+++|+++++++|+++|+|.+||+++.+
T Consensus 34 ~~ip~~YIV~lk~~~-~-~~~~~~h~~~l~s~~~~~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v 111 (114)
T 2w2n_P 34 WRLPGTYVVVLKEET-H-LSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV 111 (114)
T ss_dssp GEEEEEEEEEECTTC-C-HHHHHHHHHHHHHHHHHTTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred cCCCCcEEEEECCCC-C-HHHHHHHHHHHHHHhhhcccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceE
Confidence 346789999999877 4 33456788898888766 3478999999999999999999999999999999999999887
Q ss_pred cc
Q 004113 105 QL 106 (773)
Q Consensus 105 ~~ 106 (773)
+.
T Consensus 112 ~~ 113 (114)
T 2w2n_P 112 FA 113 (114)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 39
>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B
Probab=98.89 E-value=4.4e-09 Score=87.82 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=58.7
Q ss_pred CCCCceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEecCceecc
Q 004113 27 GSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQL 106 (773)
Q Consensus 27 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~~V~~~~~~~~ 106 (773)
+..+++|||.|+++. . .... .+++++..+.+++++|++ |+||+++++++++++|+++|+|.+||+++.+++
T Consensus 5 ~~i~~~YIV~~k~~~-~----~~~~---~~~~~~~~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~ 75 (80)
T 3cnq_P 5 SNGEKKYIVGFKQGF-K----SCAK---KEDVISEKGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRA 75 (80)
T ss_dssp ---CCEEEEEECTTC-C----SHHH---HHHHHHTTTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEE
T ss_pred ccCCCCEEEEECCCC-C----hHHH---HHHHHHHcCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEE
Confidence 346799999999887 3 1111 123344456789999998 999999999999999999999999999999988
Q ss_pred cccc
Q 004113 107 HTTR 110 (773)
Q Consensus 107 ~~~~ 110 (773)
+++.
T Consensus 76 ~tt~ 79 (80)
T 3cnq_P 76 LSAT 79 (80)
T ss_dssp CCC-
T ss_pred eeec
Confidence 7654
No 40
>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P
Probab=98.65 E-value=2.7e-08 Score=89.77 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=60.8
Q ss_pred CCCceEEEEeccCCCCCCCchhHHHHHHHHHhcc--cCccEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEecCceec
Q 004113 28 SKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKW--KKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQ 105 (773)
Q Consensus 28 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~~V~~~~~~~ 105 (773)
..+++|||.|+++. . ......+.+.+.+..+. .+.+++++|++.||||+++++++++++|+++|+|.+|++++.++
T Consensus 45 ~Ip~~YIV~~K~~~-~-~~~~~~~~~~l~~~~~~r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~ 122 (124)
T 2qtw_A 45 RLPGTYVVVLKEET-H-LSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVF 122 (124)
T ss_dssp EEEEEEEEEECTTC-C-HHHHHHHHHHHHHHHHHTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEE
T ss_pred CCCCCEEEEECCCC-C-HHHHHHHHHHHHHHHhhcccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEe
Confidence 46789999999887 4 22233444455554433 44789999999999999999999999999999999999998775
Q ss_pred c
Q 004113 106 L 106 (773)
Q Consensus 106 ~ 106 (773)
.
T Consensus 123 a 123 (124)
T 2qtw_A 123 A 123 (124)
T ss_dssp E
T ss_pred c
Confidence 4
No 41
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=98.48 E-value=3.2e-07 Score=75.38 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=55.0
Q ss_pred ceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEec-ceeeEEEEEcCHHHHHHHhCC--CCeEEEecCceecc
Q 004113 31 GVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYK-HGFSGFAARLSAEEAHALSKK--PGVVSIFPDPVLQL 106 (773)
Q Consensus 31 ~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~ng~s~~l~~~~i~~L~~~--p~V~~V~~~~~~~~ 106 (773)
+.|||.|+++. . ......+.+++.. .+.++.+.|+ ..|+||+++++++.+++|+++ |.|.+||+++.+.+
T Consensus 3 ~sYIV~lk~~~-~-~~~~~~~~~~~~~----~gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 3 GKFIVIFKNDV-S-EDKIRETKDEVIA----EGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA 75 (76)
T ss_dssp EEEEEEECTTC-C-HHHHHHHHHHHHH----HTCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred ceEEEEECCCC-C-HHHHHHHHHHHHh----hCCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence 68999999887 3 2223334444443 3457899994 789999999999999999999 89999999988754
No 42
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=98.21 E-value=4.9e-06 Score=80.49 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=72.2
Q ss_pred ccCCCCCCccccc-------ccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCc--cc----cccCccccEEEe
Q 004113 391 ARNCDLDSLAGAL-------VKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR--AV----ASSYGTFPLTVI 457 (773)
Q Consensus 391 ~~~c~~~~~~~~~-------~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~--~~----~~~~~~~p~~~i 457 (773)
...|.+....... .+++|+|++||. .|+|.+|..+++++||.++|+||+... .. ......||+++|
T Consensus 83 ~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~-~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 83 LNACNPHTNFTVPTVWGSTVQVSWLALIQRGG-GCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp TTCCSTTCCBCCCBCTTSSCBCCEEEEEESCT-TCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred cCCCCCCccccCCcccccccCCCeEEEEECCC-CcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 4679887643222 478999999964 167999999999999999999998521 11 123347999999
Q ss_pred cHHHHHHHHHHHhcCCCceEEEeeCe
Q 004113 458 SSKEAAEILAYINSKRNPVATILPTV 483 (773)
Q Consensus 458 ~~~~~~~l~~~~~~~~~~~~~i~~~~ 483 (773)
+..+|+.|++++.++...+++|....
T Consensus 162 s~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 162 GNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 99999999999999988888777654
No 43
>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B
Probab=97.69 E-value=3.9e-05 Score=60.72 Aligned_cols=62 Identities=19% Similarity=0.098 Sum_probs=52.5
Q ss_pred ceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEecCceec
Q 004113 31 GVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQ 105 (773)
Q Consensus 31 ~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~~V~~~~~~~ 105 (773)
.+|||.+++.. . .++.++..+.++.++|.. +++++++||++.++.|+++|+|++||+|...+
T Consensus 2 ~~~IV~f~~~~-~-----------~~~~i~~~gG~i~~~~~~-I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 2 IRVIVSVDKAK-F-----------NPHEVLGIGGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp EEEEEEECGGG-C-----------CGGGGGGGTCEEEEECSS-SSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred eeEEEEEcCcc-h-----------hHHHHHHCCCEEEEEecC-CcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 48999998744 1 233566677899999987 99999999999999999999999999998764
No 44
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=95.12 E-value=0.048 Score=59.92 Aligned_cols=70 Identities=23% Similarity=0.304 Sum_probs=56.9
Q ss_pred cccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccc-----ccCccccEEEecHHHHHHHHHHHh
Q 004113 399 LAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA-----SSYGTFPLTVISSKEAAEILAYIN 470 (773)
Q Consensus 399 ~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~-----~~~~~~p~~~i~~~~~~~l~~~~~ 470 (773)
+...+++|||+|++++. |.+..|..++..+||.|+|++++...... .....+|.+.++.++++.|+.++.
T Consensus 108 ~~~~dv~GkIvlv~~g~--~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 108 VAGKDLNGKIALIQRGN--ISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTTSCCTTSEEEEECCS--SCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred cCCCCcCceEEEEeCCC--CCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 33458999999999965 57899999999999999999998642211 134579999999999999999884
No 45
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.53 E-value=0.12 Score=45.96 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=52.2
Q ss_pred ccEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCcEEEEEEEE-CCceeEE
Q 004113 682 EGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWS-NGKYKVR 760 (773)
Q Consensus 682 ~~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~l~~~-~~~~~v~ 760 (773)
++.+.+++++|+| ..+..|+.... +- .+++|+..++ ++||++.++|+|.+.. .+.+.+.|.+. ++...+.
T Consensus 41 ~~~~~~~~l~N~g-~~~~~f~~~~~--~~--F~i~P~~g~L-~pg~~~~i~V~F~P~~---~g~~~~~l~v~~~~g~~~~ 111 (122)
T 2ys4_A 41 YSTQKILLVRNIG-NKNAVFHIKTC--RP--FSIEPAIGTL-NVGESMQLEVEFEPQS---VGDHSGRLIVCYDTGEKVF 111 (122)
T ss_dssp SCEEEEEEEECCS-SSCEEEEEECC--TT--EEEESSEEEE-CTTCEEEEEEEECCSS---SBCCCCBCEEEESSSCEEC
T ss_pred CeEEEEEEEEECC-CCCEEEEEecC--CC--eEEECCcCEE-CCCCEEEEEEEEEcCC---CccEEEEEEEEECCCCEEE
Confidence 3788899999999 88888877654 33 5558999998 6799999999998852 23345555543 4445555
Q ss_pred EEE
Q 004113 761 SLF 763 (773)
Q Consensus 761 ~P~ 763 (773)
+++
T Consensus 112 v~L 114 (122)
T 2ys4_A 112 VSL 114 (122)
T ss_dssp CEE
T ss_pred EEE
Confidence 544
No 46
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=93.63 E-value=0.14 Score=56.56 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=59.5
Q ss_pred cccccceEEEEecCCCCC-------chhhh----hcccccCCceEEEEEeCCCcc----------ccccCccccEEEecH
Q 004113 401 GALVKGKIVLCDNDDDMG-------SVVDK----KDGVKSLGGVGVIVIDDQSRA----------VASSYGTFPLTVISS 459 (773)
Q Consensus 401 ~~~~~gki~l~~~~~~~~-------~~~~k----~~~~~~~Ga~g~i~~~~~~~~----------~~~~~~~~p~~~i~~ 459 (773)
+.+++|||||+.++.+.. .+..| ..++.++||.|+|++++.... .......+|++.|+.
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~ 203 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISN 203 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECH
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecH
Confidence 568999999999876531 23344 346899999999999975411 111235799999999
Q ss_pred HHHHHHHHHHhcCCCceEEEeeC
Q 004113 460 KEAAEILAYINSKRNPVATILPT 482 (773)
Q Consensus 460 ~~~~~l~~~~~~~~~~~~~i~~~ 482 (773)
++++.|+..+..+....+++...
T Consensus 204 ~da~~L~~~l~~g~~~~v~l~~~ 226 (444)
T 3iib_A 204 PDADLINAMLKRDKEVVISLELG 226 (444)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEEe
Confidence 99999999998776555555443
No 47
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=92.86 E-value=0.091 Score=61.10 Aligned_cols=69 Identities=25% Similarity=0.368 Sum_probs=54.7
Q ss_pred cccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCc-----------------------cc-----ccc----
Q 004113 401 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR-----------------------AV-----ASS---- 448 (773)
Q Consensus 401 ~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~-----------------------~~-----~~~---- 448 (773)
..+++|||+|+++|. |.+.+|..+|..+||.|+|+|++..+ .. ..+
T Consensus 150 ~~~v~GkIvlv~~G~--~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TP 227 (707)
T 3fed_A 150 GINCTGKIVIARYGK--IFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTP 227 (707)
T ss_dssp CCCCTTCEEEEECCS--SCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCT
T ss_pred CCCCCCeEEEEECCC--CCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCC
Confidence 457999999999976 67999999999999999999986220 00 011
Q ss_pred ------------------CccccEEEecHHHHHHHHHHHhc
Q 004113 449 ------------------YGTFPLTVISSKEAAEILAYINS 471 (773)
Q Consensus 449 ------------------~~~~p~~~i~~~~~~~l~~~~~~ 471 (773)
...||++.|+..+++.|+..+..
T Consensus 228 G~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 228 GYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp TSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 13689999999999999987654
No 48
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=92.76 E-value=1.1 Score=40.65 Aligned_cols=87 Identities=5% Similarity=-0.059 Sum_probs=62.5
Q ss_pred ccEEEEEEEEeccCCCCeEEEEEEeCC----CCcEEEEecCeEEEccCCcEEEEEEEEEeccC----C-C-CCcEEEEEE
Q 004113 682 EGRTISRTVTNVAGNNETIYTVAVDAP----QGLNVKVIPEELQFTKSGQKLSYQVTFTSALS----P-L-KEDVFGSIT 751 (773)
Q Consensus 682 ~~~~~~~tvtn~~~~~~~ty~~~~~~~----~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~----~-~-~~~~~G~l~ 751 (773)
+..+-+++++|+| ..+.+|++..... ..--++++|..-++ ++||+.+++|++...+. . . ..-++--|+
T Consensus 43 ~~~~~~l~I~Ntg-~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLv 120 (140)
T 3qbt_B 43 QLQKEKFQISNNG-QVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILV 120 (140)
T ss_dssp CCEEEEEEEEECS-SSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEE
T ss_pred eeeeeEEEEEcCC-ccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEE
Confidence 4678889999999 9999999985321 11235668999988 67999999999987531 0 0 122345567
Q ss_pred EE-CCceeEEEEEEEEeeCC
Q 004113 752 WS-NGKYKVRSLFVVSSKSS 770 (773)
Q Consensus 752 ~~-~~~~~v~~P~~~~~~~~ 770 (773)
+. +++++..+|+...+.+|
T Consensus 121 L~Ve~G~d~fI~v~g~~~ps 140 (140)
T 3qbt_B 121 LHLDRGKDYFLTISGNYLPS 140 (140)
T ss_dssp EEETTSCEEEEEEEEEECCC
T ss_pred EEeecCCcEEEEEeccccCC
Confidence 65 67788899998887664
No 49
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=90.13 E-value=0.3 Score=56.13 Aligned_cols=67 Identities=22% Similarity=0.420 Sum_probs=53.1
Q ss_pred ccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc-c--------------cc-------------------
Q 004113 402 ALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA-V--------------AS------------------- 447 (773)
Q Consensus 402 ~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-~--------------~~------------------- 447 (773)
.+++|||+|++++. |.+..|..++..+||.|+|++++.... . ..
T Consensus 128 vdv~GkIvlv~~g~--~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~ 205 (640)
T 3kas_A 128 TPVNGSIVIVRAGK--ITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSR 205 (640)
T ss_dssp SCCTTSEEEEESCS--SCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCS
T ss_pred cccCCcEEEEecCC--CCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccc
Confidence 47999999999964 679999999999999999999975310 0 00
Q ss_pred --cCccccEEEecHHHHHHHHHHHh
Q 004113 448 --SYGTFPLTVISSKEAAEILAYIN 470 (773)
Q Consensus 448 --~~~~~p~~~i~~~~~~~l~~~~~ 470 (773)
....||+..|+..+++.|+..+.
T Consensus 206 ~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 206 SSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp SCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred ccCCCCCCEEecCHHHHHHHHHHcc
Confidence 01268999999999999987553
No 50
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.10 E-value=0.75 Score=39.82 Aligned_cols=81 Identities=11% Similarity=0.167 Sum_probs=53.1
Q ss_pred CCCCeEEEeccCCCccEEEEEEEEeccCCCCeEEEEEEeC-CCCcEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCcE
Q 004113 668 INYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDA-PQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDV 746 (773)
Q Consensus 668 ln~ps~~~~~~~~~~~~~~~~tvtn~~~~~~~ty~~~~~~-~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~ 746 (773)
++...+-++.+.-++..+.+++++|.| +.+..|+..... +.+...+++|..-.+ ++|++++++|+|.+.. .+. .
T Consensus 12 ~~~~~ldFG~v~~g~~~~~~~~l~N~g-~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~--~g~-f 86 (112)
T 2e6j_A 12 FNFELLDIGKVFTGSAHCYEAILYNKG-SIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSII--LGN-F 86 (112)
T ss_dssp ESCSEEEEEEEESSCCEEEEEEEEECC-SSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCC--CEE-E
T ss_pred ECcccEecEeEEECCEEEEEEEEEECC-cceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCC--cce-E
Confidence 334444444333234778889999999 899999984321 112346678999988 5799999999998853 233 3
Q ss_pred EEEEEEE
Q 004113 747 FGSITWS 753 (773)
Q Consensus 747 ~G~l~~~ 753 (773)
.=.|++.
T Consensus 87 ~~~i~v~ 93 (112)
T 2e6j_A 87 EEEFLVN 93 (112)
T ss_dssp EEEECEE
T ss_pred EEEEEEE
Confidence 3446654
No 51
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=86.19 E-value=0.49 Score=52.06 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=26.7
Q ss_pred cCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecC
Q 004113 489 KPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMG 527 (773)
Q Consensus 489 ~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~ 527 (773)
...+.++.||++||.. ||+|||++|+++++.
T Consensus 181 ~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 181 DSNLDHAAFSQYTDQV--------EISGPGEAILSTVTV 211 (441)
T ss_dssp CTTCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred CCCCCCCccccCCCce--------EEEeccCCeeccccC
Confidence 4457899999999855 999999999999874
No 52
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=85.98 E-value=0.35 Score=59.45 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=22.6
Q ss_pred CCCCCCcEEEEEccCCCCCCCCCC
Q 004113 134 QDQESDTIIGILDTGVWPESESFN 157 (773)
Q Consensus 134 ~~~G~Gv~VaVIDtGid~~Hp~f~ 157 (773)
.+.|+||+|||+|||||+.+|.|.
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 678999999999999999999986
No 53
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=85.13 E-value=4 Score=40.02 Aligned_cols=86 Identities=5% Similarity=-0.013 Sum_probs=55.8
Q ss_pred cCCCccEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCcEEEEEEEE--C-
Q 004113 678 FDGKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWS--N- 754 (773)
Q Consensus 678 ~~~~~~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~l~~~--~- 754 (773)
+..++..+.+++++|.| +.+.+++... .|+-++...+| -++ ++||+.+++|+++......-+...+.|++. +
T Consensus 15 v~~g~~~~~~~~i~N~g-~~pl~i~~~~-~p~~~~~~~~~--~~I-~PG~~g~I~vt~~~~~~~~~G~~~~~i~v~~~~~ 89 (220)
T 2qsv_A 15 SMPEDEGVVRLVVNNTD-ESDLQVAVVS-LPSFVSLDDRA--FRL-QAREPRELNLSLAVPRNMPPGMKDEPLVLEVTSP 89 (220)
T ss_dssp BCTTCCCEEEEEEEECS-SSCEEEEEEE-CCTTEECSCCE--EEE-CSSSCEEEEEEECCCTTCCSEEEEEEEEEEEECT
T ss_pred ccCCCcceEEEEEEeCC-CCceEEEecc-CCCceEeeeCc--cee-CCCCceEEEEEEcchhcccCCceeeEEEEEEEcC
Confidence 43344677899999999 8888887653 36665554333 444 579999999999886543345556767764 3
Q ss_pred -Cc--eeEEEEEEEEee
Q 004113 755 -GK--YKVRSLFVVSSK 768 (773)
Q Consensus 755 -~~--~~v~~P~~~~~~ 768 (773)
+. ...++|+.....
T Consensus 90 ~~~~~~~~~i~v~g~v~ 106 (220)
T 2qsv_A 90 ETGKKAVDSVMVSLPLV 106 (220)
T ss_dssp TTCCEEEEEEEEEEEEC
T ss_pred CCCcccccEEEEEEEEc
Confidence 32 244666665443
No 54
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=82.77 E-value=15 Score=38.87 Aligned_cols=88 Identities=5% Similarity=-0.013 Sum_probs=61.2
Q ss_pred CccEEEEEEEEeccCCCCeEEEEEEeCCCCcE----EEEecCeEEEccCCcEEEEEEEEEeccCC----C--CCcEEEEE
Q 004113 681 KEGRTISRTVTNVAGNNETIYTVAVDAPQGLN----VKVIPEELQFTKSGQKLSYQVTFTSALSP----L--KEDVFGSI 750 (773)
Q Consensus 681 ~~~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~----v~v~p~~~~~~~~~~~~~~~vt~~~~~~~----~--~~~~~G~l 750 (773)
.+..+-++|++|+| ..+.+|++.-....... ++++|..-++ .+||+++++|++...+.. + ..-.+--|
T Consensus 45 ~~~~~~~l~i~N~g-~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l-~Pge~~~i~l~~~v~~~~~~~ln~g~~~l~diL 122 (366)
T 3qis_A 45 RQLQKEKFQISNNG-QVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDIL 122 (366)
T ss_dssp TCCEEEEEEEEECS-SSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCTTTHHHHHHTSSCSCEEE
T ss_pred CCeEEEEEEEEecC-CceEEEEEEeCCCCCCCCCCcEEEeCCccEE-CCCCEEEEEEEEEECHHHHHHHhcCccccceEE
Confidence 44788899999999 99999999654322221 6778999988 578999999999876410 0 12234456
Q ss_pred EEE-CCceeEEEEEEEEeeCC
Q 004113 751 TWS-NGKYKVRSLFVVSSKSS 770 (773)
Q Consensus 751 ~~~-~~~~~v~~P~~~~~~~~ 770 (773)
++. +++++.-+|+-..+..+
T Consensus 123 vL~ve~G~d~FI~v~~~~~~s 143 (366)
T 3qis_A 123 VLHLDRGKDYFLTISGNYLPS 143 (366)
T ss_dssp EEEETTSCEEEEEEEEEECCC
T ss_pred EEEEeCCCcEEEEeccccCCc
Confidence 664 56677778877766544
No 55
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=82.76 E-value=6 Score=34.53 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=43.5
Q ss_pred EEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEecc
Q 004113 684 RTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSAL 739 (773)
Q Consensus 684 ~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 739 (773)
-..++.+.|.. ..+.+|+++++..+++++. .+..+++ +++|+.++.|.+..+.
T Consensus 33 N~Ytlki~Nkt-~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 33 NTYTLKVINKT-QQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEEEECS-SSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECG
T ss_pred EEEEEEEEECC-CCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEECh
Confidence 45788999999 8999999999988777664 3556777 6799999999998864
No 56
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=66.16 E-value=20 Score=31.73 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=36.8
Q ss_pred CccEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEe
Q 004113 681 KEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTS 737 (773)
Q Consensus 681 ~~~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~ 737 (773)
++..+++.||+|.|......|++.+.. .|..+.-. ...+ ++|++++++++...
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyv-ng~~v~t~--~v~L-a~G~s~tv~f~~~~ 84 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYI-NGTLYKNW--TVSL-GPKEEKVLTFNWTP 84 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEE-TTEEEEEE--EEEE-CTTCEEEEEEEECC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEE-CCEEEeeE--Eecc-CCCCeEEEEEEEEc
Confidence 558999999999993234778887665 45555433 2345 67889887777753
No 57
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=64.38 E-value=32 Score=33.40 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=52.8
Q ss_pred CeEEEeccCCCccEEEEEEEEeccCCCCeEEEEEEeCCCC-cEEEEecCeEEEccCCcEEEEEEEEEeccCCCCC-c--E
Q 004113 671 PSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAPQG-LNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKE-D--V 746 (773)
Q Consensus 671 ps~~~~~~~~~~~~~~~~tvtn~~~~~~~ty~~~~~~~~g-~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~-~--~ 746 (773)
..+-++.+. +...+.+++++|+| +.+...+ .+...-| ..+.. +.-.+ ++||+.+++|+++.... .+. | .
T Consensus 124 ~~~dfG~i~-g~~~~~~f~i~N~G-~~pL~I~-~v~~scgct~~~~--~~~~i-~PGe~~~i~v~~~~~~~-~g~~~~~~ 196 (220)
T 2qsv_A 124 TYLDMGQLD-GETTKAAIEIRNVG-AGPLRLH-SVTTRNPALTAVP--DRTEI-KPGGSTLLRIAVDPQVM-KAEGWQSI 196 (220)
T ss_dssp CEEEEEECT-TSCEEEEEEEEECS-SSCEEEE-EEEECSTTEEEEE--SCSEE-CTTCEEEEEEEECHHHH-HHTTCSEE
T ss_pred eEEeeeccC-CCeEEEEEEEEECC-CCCEEEE-EEEeCCCCEeeec--CCccC-CCCCEEEEEEEEecCCC-CCccccee
Confidence 455556666 56888999999999 7776664 2333333 34443 33334 67999999999987542 122 1 4
Q ss_pred EEEEEEE-CC--ceeEEEEEE
Q 004113 747 FGSITWS-NG--KYKVRSLFV 764 (773)
Q Consensus 747 ~G~l~~~-~~--~~~v~~P~~ 764 (773)
...|+.. ++ .+.+++.|-
T Consensus 197 ~~~i~v~~N~~~~p~~~l~i~ 217 (220)
T 2qsv_A 197 AADISIICNDPQAPLRRIKVK 217 (220)
T ss_dssp EEEEEEEESCTTCSEEEEEEE
T ss_pred ccEEEEEECCCCCcEEEEEEE
Confidence 5666654 33 344455543
No 58
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=55.32 E-value=24 Score=40.90 Aligned_cols=55 Identities=11% Similarity=0.020 Sum_probs=34.8
Q ss_pred cEEEEEEEEeccCCCCeEEEE--EEeCCCC-----cEEEEecCeEEEccCCcEEEEEEEEEecc
Q 004113 683 GRTISRTVTNVAGNNETIYTV--AVDAPQG-----LNVKVIPEELQFTKSGQKLSYQVTFTSAL 739 (773)
Q Consensus 683 ~~~~~~tvtn~~~~~~~ty~~--~~~~~~g-----~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 739 (773)
..+++++|||+| +.+..-.+ -+..|.+ ++.-+-=..+.+ ++||+++++++++..+
T Consensus 614 ~~~vsv~VtNtG-~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~kv~L-~pGes~~V~~~l~~~~ 675 (713)
T 3zyz_A 614 VATVTVDIANSG-QVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNL-TPGQSGTATFNIRRRD 675 (713)
T ss_dssp EEEEEEEEEECS-SSCEEEEEEEEEECCTTSSSCCSCEEEEEEEEEE-CTTCEEEEEEEEEGGG
T ss_pred eEEEEEEEEeCC-CCccceeeeeeeecCCCCCCchhHHhhhccccee-CCCCeEEEEEEEcHHH
Confidence 578999999999 76655444 4455532 111111222334 6899999999998764
No 59
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=51.77 E-value=25 Score=40.86 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=44.6
Q ss_pred CCCCCCCCeEEEeccCC---CccEEEEEEEEeccCCCC--eEEEEEEeCCCC-c----EEEEecCeEEEccCCcEEEEEE
Q 004113 664 SISNINYPSIAVSSFDG---KEGRTISRTVTNVAGNNE--TIYTVAVDAPQG-L----NVKVIPEELQFTKSGQKLSYQV 733 (773)
Q Consensus 664 ~~~~ln~ps~~~~~~~~---~~~~~~~~tvtn~~~~~~--~ty~~~~~~~~g-~----~v~v~p~~~~~~~~~~~~~~~v 733 (773)
....|.|-+|...++.- +...+++++|||+| +.+ .+-.+-+..|.+ + +.-+-=..+...++||++++++
T Consensus 594 FG~GLSYTtF~ys~~~~~~~~~~~~v~v~VtNtG-~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~~L~pGes~~V~~ 672 (721)
T 2x41_A 594 FGYGLSYTTFEYSDLNVSFDGETLRVQYRIENTG-GRAGKEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVL 672 (721)
T ss_dssp TTCCBCSSCEEEEEEEEEECSSEEEEEEEEEECS-SSCBCCEEEEEEECCCSSSCCCSCEEEEEEECCCBCTTCEEEEEE
T ss_pred cCCCCCcceeEeeceEeecCCCeEEEEEEEEECC-CCCCcEEeeEEEccCCCCCCCchHHhhcccccccCCCCCeEEEEE
Confidence 44567777776654431 23688999999999 644 444555555532 1 1111111220236899999999
Q ss_pred EEEecc
Q 004113 734 TFTSAL 739 (773)
Q Consensus 734 t~~~~~ 739 (773)
+++..+
T Consensus 673 ~l~~~~ 678 (721)
T 2x41_A 673 EIPVRD 678 (721)
T ss_dssp EEEGGG
T ss_pred EECHHH
Confidence 998763
No 60
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=49.49 E-value=71 Score=27.92 Aligned_cols=52 Identities=17% Similarity=0.223 Sum_probs=42.7
Q ss_pred cEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEec
Q 004113 683 GRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSA 738 (773)
Q Consensus 683 ~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 738 (773)
.++-+++++|.+ +...-|.+....|.-. .|.|..=.+ +++++.++.|++...
T Consensus 28 ~~~~~l~L~N~s-~~~vaFKVKTT~p~~y--~VrP~~G~i-~P~~s~~v~V~~~~~ 79 (128)
T 1z9l_A 28 VVTTNLKLQNPS-DRKVCFKVKTTAPRRY--CVRPNSGVI-DPGSIVTVSVMLQPF 79 (128)
T ss_dssp CEEEEEEEECCS-SSCEEEEEEESCGGGE--EEESCEEEE-CTTCEEEEEEEECCC
T ss_pred eEEEEEEEECCC-CCeEEEEEECCCCCce--EEeCCCcEE-CCCCeEEEEEEECcC
Confidence 678889999999 8889999988887654 456888766 679999999999874
No 61
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=46.92 E-value=1.1e+02 Score=34.28 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=49.3
Q ss_pred CCCeEEEeccCCCccEEEEEEEEeccCCCCeEE-EEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCcEE
Q 004113 669 NYPSIAVSSFDGKEGRTISRTVTNVAGNNETIY-TVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVF 747 (773)
Q Consensus 669 n~ps~~~~~~~~~~~~~~~~tvtn~~~~~~~ty-~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~ 747 (773)
..|.+++.. +++.+++.+|+|-+ ..+..- ++++..|.+.+++. ....+ ++|++.+++++|..+.....+.+.
T Consensus 363 ~~~~~~~~~---g~~~~~~~~vtn~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~g~~~t~~~~vt~~~~~~~g~y~ 435 (601)
T 1w8o_A 363 TIPDVALEP---GQQVTVPVAVTNQS-GIAVPKPSLQLDASPDWQVQG--SVEPL-MPGRQAKGQVTITVPAGTTPGRYR 435 (601)
T ss_dssp ECCCEEECT---TCEEEEEEEEECCS-SSCBSSCEEEEECCTTSEEEE--EECCB-CTTCEEEEEEEEECCTTCCCEEEE
T ss_pred cCccceecC---CceeEEEEEEECCC-ceeccCceEEEecCCCcEEec--ccccc-CCCCceEEEEEEecCCCCCCCcEE
Confidence 356666652 34788999999976 432211 34466688998876 23444 568998888888886533333333
Q ss_pred EEEEEECC
Q 004113 748 GSITWSNG 755 (773)
Q Consensus 748 G~l~~~~~ 755 (773)
=.+.+...
T Consensus 436 l~~~~~~~ 443 (601)
T 1w8o_A 436 VGATLRTS 443 (601)
T ss_dssp EEEEEEET
T ss_pred eeEEEEec
Confidence 33455543
No 62
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=46.89 E-value=45 Score=30.34 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=42.4
Q ss_pred cEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEec
Q 004113 683 GRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSA 738 (773)
Q Consensus 683 ~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 738 (773)
.++-.++++|.+ +....|.+.-..|.-.. |.|..=.+ +++++.+++|++...
T Consensus 36 ~~~~~l~L~N~s-~~~VaFKVKTT~p~~y~--VrP~~GiI-~P~~s~~V~V~lq~~ 87 (152)
T 1wic_A 36 EKKTLIVLTNVT-KNIVAFKVRTTAPEKYR--VKPSNSSC-DPGASIDIIVSPHGG 87 (152)
T ss_dssp CCCEEEEEEBCS-SSCEEEEEEESCTTTEE--EESSEEEE-CTTCEEEEEEEECSS
T ss_pred eEEEEEEEEcCC-CCeEEEEEECCCCCcee--ecCCCcEE-CCCCeEEEEEEecCc
Confidence 456689999999 88899999988886554 46888777 679999999999774
No 63
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=46.07 E-value=98 Score=26.74 Aligned_cols=51 Identities=10% Similarity=0.080 Sum_probs=40.4
Q ss_pred EEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEecc
Q 004113 685 TISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSAL 739 (773)
Q Consensus 685 ~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 739 (773)
+.+++++|.+ +....|.++-..|.-..| .|..-.+ ++|++.++.|+..+..
T Consensus 26 ~~~l~L~N~t-~~~vAFKVKtT~p~~YrV--rP~~G~I-~Pg~~~~I~I~~q~~~ 76 (116)
T 1m1s_A 26 NSTHNITSES-DSRLAFKVKSSNNEHYRV--RPVYGFV-DAKGKSKLDINRLPGP 76 (116)
T ss_dssp EEEEEEEECS-SSEEEEEEEESCTTTEEE--ECSEEEE-CTTCEEEEEEEECSCC
T ss_pred EEEEEEECCC-CCeEEEEEEecCCCceEE--cCCceEE-CCCCeEEEEEEeCCCC
Confidence 5678899999 888888888877766555 6877665 6799999999998753
No 64
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=45.72 E-value=57 Score=28.57 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=42.2
Q ss_pred cEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEec
Q 004113 683 GRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSA 738 (773)
Q Consensus 683 ~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 738 (773)
..+-.++++|.+ +...-|.++...|.-.. |.|..-.+ +++|+..+.|++.+.
T Consensus 26 ~~~~~l~l~N~s-~~~vaFKVKTT~p~~y~--VrP~~Gii-~P~~s~~v~V~~q~~ 77 (126)
T 1msp_A 26 KHTYHIKITNAG-GRRIGWAIKTTNMRRLS--VDPPCGVL-DPKEKVLMAVSCDTF 77 (126)
T ss_dssp CCCEEEEEEECS-SSCEEEEEEESCTTTEE--EESCEEEE-CTTCEEEEEEEECCC
T ss_pred ceEEEEEEECCC-CCeEEEEEEcCCCCcEE--EECCCeEE-CCCCEEEEEEEecCC
Confidence 456678999999 88899999988887654 46888777 678999999998773
No 65
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=43.87 E-value=79 Score=26.94 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=40.3
Q ss_pred EEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEec
Q 004113 685 TISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSA 738 (773)
Q Consensus 685 ~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 738 (773)
+-+++++|.+ +....|.++-..|.-..| .|..-.+ ++|++.++.|+....
T Consensus 18 ~~~l~L~N~t-~~~vaFKVKtT~p~~y~V--rP~~G~I-~P~~~~~i~I~~q~~ 67 (109)
T 1row_A 18 SSTHKLVNGG-AEKIVFKIKSSNNNEYRI--APVFGFV-DPSGSKDVVITRTAG 67 (109)
T ss_dssp EEEEEEEECS-SSCEEEEEEESCSSSEEE--ECSEEEE-CTTEEEEEEEEECSC
T ss_pred eEEEEEEcCC-CCeEEEEEEeCCCCceEE--cCCceEE-CCCCeEEEEEEeCCC
Confidence 4678889999 888999998887766555 6887666 679999999999875
No 66
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.50 E-value=88 Score=28.14 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=42.7
Q ss_pred cEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEec
Q 004113 683 GRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSA 738 (773)
Q Consensus 683 ~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 738 (773)
.++-.++++|.+ +...-|.+....|.-..| .|..=.+ +++++.++.|++...
T Consensus 32 ~~~~~l~L~N~s-~~~VaFKVKTT~p~~y~V--rP~~GiI-~P~~s~~v~V~l~~~ 83 (147)
T 2cri_A 32 VVTTNLKLQNPS-DRKVCFKVKTTAPRRYCV--RPNSGII-DPGSIVTVSVMLQPF 83 (147)
T ss_dssp CCCEEEEEECCS-SSCEEEEEEESCTTSEEE--ESSEEEC-CTTCEEEEEEEECCC
T ss_pred eEEEEEEEECCC-CCcEEEEEECCCCccEEE--cCCCcEE-CCCCeEEEEEEECCC
Confidence 566789999999 888999999888876554 6887666 679999999999874
No 67
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=38.07 E-value=22 Score=26.78 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=28.7
Q ss_pred ccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 004113 548 TSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQT 585 (773)
Q Consensus 548 TSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~ 585 (773)
.|-..|..--.+..|++.||+++...|+..|...-..+
T Consensus 2 ~~~~~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdv 39 (59)
T 1wgl_A 2 SSGSSGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNK 39 (59)
T ss_dssp CSCSSSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCH
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCH
Confidence 34444455567788999999999999999998775443
No 68
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=37.65 E-value=89 Score=36.92 Aligned_cols=165 Identities=14% Similarity=0.180 Sum_probs=86.7
Q ss_pred cceeeccccchhhHHHHHHHHHHhhCCCCC-HHHHHHHHHhcccccCCCCCccccCCC-CCCCCCCCC--cccccccccC
Q 004113 541 LFNVISGTSMSCPHISGVVAAIKHQNPTFS-PSEIKSAVMTTATQTNNLRAPITTNSG-AAATPYDFG--AGEVSTTASL 616 (773)
Q Consensus 541 ~y~~~sGTSmAaP~VAG~aALl~~~~p~ls-~~~Ik~~L~~TA~~~~~~g~~~~~~~~-~~~~~~~~G--~G~id~~~A~ 616 (773)
-...++|..++-|-+.-+-|+|...+|..- ...|-.+|.--..|-...-..+..... .+.. ..|. .|+
T Consensus 618 VVVl~sG~pv~m~w~~~v~AIL~aw~pGqegG~AiAdVLfG~vNPSGkLP~T~p~~~~d~P~~-~~~~~~~g~------- 689 (845)
T 3abz_A 618 VIVNQSGTPVEFPWLEDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAF-LNFKTEFGR------- 689 (845)
T ss_dssp EEEEECSSCCCCTTGGGCSEEEECCCCCTTHHHHHHHHHTTSSCCCCCCSSCBCSSGGGSTTT-TSCSCBTTE-------
T ss_pred EEEEeCCCcccCcchhccCeEEEcCCCcHHHHHHHHHHhcCCcCCCCCCceeeeCchhhCCcc-ccCCCCCCc-------
Confidence 346778888888888888888888888765 677888887766654322111100000 0000 0111 111
Q ss_pred CCceeecCCc-hhhhccccccCCCcceeeeeeccCCCCccCCCCCCCCCCCCCCCCeEEEe--ccCC-CccEEEEEEEEe
Q 004113 617 QPGLVYETTT-LDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSISNINYPSIAVS--SFDG-KEGRTISRTVTN 692 (773)
Q Consensus 617 ~~~lv~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~--~~~~-~~~~~~~~tvtn 692 (773)
..|.... -.|..|.- . ......+....|.|-+|... ++.- +...+++++|||
T Consensus 690 ---~~y~eg~~vgYR~y~~------~---------------~~~plfPFG~GLSYTtF~ys~~~l~v~~~~~~v~v~V~N 745 (845)
T 3abz_A 690 ---VIYGEDIFVGYRYYEK------L---------------QRKVAFPFGYGLSYTTFELDISDFKVTDDKIAISVDVKN 745 (845)
T ss_dssp ---EECTTTTCCTHHHHHH------H---------------TCCCSBCTTCCBCSSCEEEEEEEEEECSSEEEEEEEEEE
T ss_pred ---eeccCCccCCCcchhc------C---------------CCceeecccCCCcceeEEEecccccccCCeEEEEEEEEE
Confidence 1122110 12332210 0 00111235667888888777 5531 226889999999
Q ss_pred cc-C-CCCeEEEEEEeCCCC-----cEEEEecCeEEEccCCcEEEEEEEEE-ec
Q 004113 693 VA-G-NNETIYTVAVDAPQG-----LNVKVIPEELQFTKSGQKLSYQVTFT-SA 738 (773)
Q Consensus 693 ~~-~-~~~~ty~~~~~~~~g-----~~v~v~p~~~~~~~~~~~~~~~vt~~-~~ 738 (773)
+| . ....+-.+-+..|.+ ++--+-=..+.+ ++||+++++++++ ..
T Consensus 746 tG~~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L-~pGes~~V~~~l~~~~ 798 (845)
T 3abz_A 746 TGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHL-EPGEKKTVNIDLELKD 798 (845)
T ss_dssp CCSSCCEEEEEEEEEEESSCSSCCCSCEEEEEEEEEE-CTTCEEEEEEEEEHHH
T ss_pred CCcCCCcceeeeeeEeCCCCCcchhhheeccceeEEE-CCCCEEEEEEEeCChH
Confidence 99 4 233444444444422 111111222334 6899999999998 44
No 69
>2kq1_A BH0266 protein; solution NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus halodurans}
Probab=36.19 E-value=9.1 Score=33.42 Aligned_cols=51 Identities=25% Similarity=0.218 Sum_probs=33.2
Q ss_pred EEEEEEEeccCCCCeEEEE--EEe-CCCCcEEEEecCeEEE-ccCCcEEEEEEEEEec
Q 004113 685 TISRTVTNVAGNNETIYTV--AVD-APQGLNVKVIPEELQF-TKSGQKLSYQVTFTSA 738 (773)
Q Consensus 685 ~~~~tvtn~~~~~~~ty~~--~~~-~~~g~~v~v~p~~~~~-~~~~~~~~~~vt~~~~ 738 (773)
.+..-+++.+ ..+|++ .++ .|.|++++++|..+++ ...-++++|.|+++..
T Consensus 56 ~~~vDLs~l~---~G~~~vpv~v~~lp~~v~v~v~P~~V~V~i~~~~~k~~pV~v~~~ 110 (119)
T 2kq1_A 56 EVFVDLTEAG---EGSHTVDVEHRGFPGDLAVTVEPRMARVQLEERQTVSVPVTVEMI 110 (119)
T ss_dssp EEEEECTTCC---BEEEEEECEEESSCTTSEEEESCCEEEEEEESCCCCCCCCCCCCC
T ss_pred EEEEECccCC---CCeEEEEEEEecCCCCeEEEEcCCEEEEEEEEEEEEEEEEEEEEC
Confidence 3445555655 445544 566 6899999999998776 2234566777776654
No 70
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=33.43 E-value=1.9e+02 Score=25.03 Aligned_cols=67 Identities=10% Similarity=0.123 Sum_probs=40.6
Q ss_pred ccEEEEEEEEeccCCCCe--------EEEEEEeCCCCcEEE---------EecCeEEEccCCcEEEEEEEEEeccCCCCC
Q 004113 682 EGRTISRTVTNVAGNNET--------IYTVAVDAPQGLNVK---------VIPEELQFTKSGQKLSYQVTFTSALSPLKE 744 (773)
Q Consensus 682 ~~~~~~~tvtn~~~~~~~--------ty~~~~~~~~g~~v~---------v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~ 744 (773)
....++++|+|.+ +.+. .|.+.+....|-.|- -.....++ ++||+++|+++.+. ....+.
T Consensus 18 ~~v~~~ltv~N~s-~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl-~pGE~~~f~~~w~~-~~~pG~ 94 (120)
T 3isy_A 18 EQIKFNMSLKNQS-ERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTL-ESGETYDFSDVWKE-VPEPGT 94 (120)
T ss_dssp SCEEEEEEEEECS-SSCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEE-CTTCEEEEEEEESS-CCCSEE
T ss_pred CeEEEEEEEEcCC-CCcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEE-CCCCEEEEEEEeCC-CCCCcc
Confidence 3788999999999 5443 444555555554433 11223455 68999999999983 123334
Q ss_pred c-EEEEEE
Q 004113 745 D-VFGSIT 751 (773)
Q Consensus 745 ~-~~G~l~ 751 (773)
| +.+.++
T Consensus 95 Ytl~a~l~ 102 (120)
T 3isy_A 95 YEVKVTFK 102 (120)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEE
Confidence 4 444444
No 71
>3sd2_A Putative member of DUF3244 protein family; immunoglobulin-like beta-sandwich, structural genomics, JOIN for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron}
Probab=31.84 E-value=2.1e+02 Score=23.94 Aligned_cols=66 Identities=21% Similarity=0.115 Sum_probs=42.5
Q ss_pred eEEEeccCCCccEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCcEEEEEE
Q 004113 672 SIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSIT 751 (773)
Q Consensus 672 s~~~~~~~~~~~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~l~ 751 (773)
.+++..... ...+++||+|-. .....|.-.+..|. .+++ .+ ..-++-+|+|.+... ..++.|..+
T Consensus 35 vlsV~F~~~--~~~vTItItNe~-TG~~VYs~~~s~p~--~i~I-----dL-nge~sG~Y~IeI~~~----~~~LtG~F~ 99 (101)
T 3sd2_A 35 ILNVSFGRA--KDYAIITVTNKA-TGEIVHSKTYHNTS--IVMI-----DM-SSCEKGEYTIHIILN----DCLLEGTFT 99 (101)
T ss_dssp EEEEEESSC--CSCEEEEEEETT-TCCEEEEEEESSCS--EEEE-----EC-TTSCSEEEEEEEEET----TEEEEEEEE
T ss_pred EEEEEeccC--CCcEEEEEEECC-CCcEEEEEeccCCc--EEEE-----Ec-CCCcCceEEEEEEeC----CcEEEEEEE
Confidence 566653333 456899999976 56888987777643 2332 12 233477889999874 367778765
Q ss_pred E
Q 004113 752 W 752 (773)
Q Consensus 752 ~ 752 (773)
.
T Consensus 100 i 100 (101)
T 3sd2_A 100 V 100 (101)
T ss_dssp E
T ss_pred e
Confidence 4
No 72
>3e9t_A Na/Ca exchange protein; CBD1, CALX, membrane, transmembrane, membrane protein; 1.60A {Drosophila melanogaster} SCOP: b.1.27.0
Probab=26.43 E-value=1.6e+02 Score=24.97 Aligned_cols=54 Identities=11% Similarity=0.173 Sum_probs=0.0
Q ss_pred cEEEEecCeEEEccCCcEEEEEEEEEecc---------------CCCCCc--EEEEEEEECC--ceeEEEEEE
Q 004113 711 LNVKVIPEELQFTKSGQKLSYQVTFTSAL---------------SPLKED--VFGSITWSNG--KYKVRSLFV 764 (773)
Q Consensus 711 ~~v~v~p~~~~~~~~~~~~~~~vt~~~~~---------------~~~~~~--~~G~l~~~~~--~~~v~~P~~ 764 (773)
+.+.+++...++.+...+.+|+|+-+... .....| ..|.|+|..| ...+++||+
T Consensus 3 i~i~F~~~~y~V~E~~g~~~v~V~R~g~~~~~v~V~y~t~~gTA~~g~Dy~~~~g~l~F~~Get~k~i~V~I~ 75 (114)
T 3e9t_A 3 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVI 75 (114)
T ss_dssp EEEEESSSEEEEETTCCEEEEEEEEEECCSSCEEEEEEEECSSSCBTTTBCCCEEEEEECTTCCEEEEEEEBC
T ss_pred EEEEEeCCEEEEEcCCeEEEEEEEEECCCCeeEEEEEEeECCccCCCCCceEcceEEEEeCCcEEEEEEEEEE
No 73
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=23.97 E-value=54 Score=29.95 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=27.4
Q ss_pred eeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 004113 544 VISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSA 577 (773)
Q Consensus 544 ~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~ 577 (773)
.+.|-| =|++|-|.+|||.+.+-..+|++|.+.
T Consensus 78 ~F~adS-DA~IvkGL~AlL~~~~~G~tp~eIl~~ 110 (155)
T 1ni7_A 78 HFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQAQ 110 (155)
T ss_dssp CCEEEE-SSHHHHHHHHHHHHHTTTCCHHHHHHS
T ss_pred EEeeCC-ccHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 344555 489999999999999999999999753
No 74
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=23.49 E-value=2.1e+02 Score=24.49 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=17.8
Q ss_pred CccEEEEEEEEeccCCC-CeEEEEEEe
Q 004113 681 KEGRTISRTVTNVAGNN-ETIYTVAVD 706 (773)
Q Consensus 681 ~~~~~~~~tvtn~~~~~-~~ty~~~~~ 706 (773)
++..+|+.+|+|.| .. ...+++.+.
T Consensus 18 ~~~~ti~atVkN~G-~~~a~~~~V~ly 43 (114)
T 2l0d_A 18 NTVNTMTATIENQG-NKDSTSFNVSLL 43 (114)
T ss_dssp TSEEEEEEEEEECS-SSCBCCEEEEEE
T ss_pred CCeEEEEEEEEECC-CCCCCCEEEEEE
Confidence 34899999999999 53 345665544
No 75
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=21.74 E-value=3.6e+02 Score=28.30 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=32.9
Q ss_pred CccEEEEEEEEeccCCCCe---EEEE---EEeC----------C------CCcEEEEecCeEEEccCCcEEEEEEEEEec
Q 004113 681 KEGRTISRTVTNVAGNNET---IYTV---AVDA----------P------QGLNVKVIPEELQFTKSGQKLSYQVTFTSA 738 (773)
Q Consensus 681 ~~~~~~~~tvtn~~~~~~~---ty~~---~~~~----------~------~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 738 (773)
++..+++++|||.| +++. .|+. .... | .| ++ +|+ -+ .+||+++++|+++-.
T Consensus 297 gR~l~~~~~VtN~g-~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~G--L~-s~~--pI-~PGETrt~~V~a~da 369 (419)
T 3rfr_A 297 GRELTINVKVKNGT-SQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRG--LS-NDD--VI-APGESKEIVVKIQDA 369 (419)
T ss_dssp SSEEEEEEEEECCS-SSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCC--CC-CCC--CB-CTTCEEEEEEEEECH
T ss_pred CcEEEEEEEEecCC-CCceEEeeEEEccEEEeCcccccCCCCCchhhhhccC--CC-CCC--Cc-CCCcceEEEEEeehH
Confidence 45788999999999 6653 2221 1111 1 24 34 566 34 679999999888764
No 76
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=20.47 E-value=5.4e+02 Score=25.29 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=36.4
Q ss_pred cEEEEEEEEeccCCCCeEEEEE--EeCCC--------CcEEEEecCeEEEccCCcEEEEEEEEEec
Q 004113 683 GRTISRTVTNVAGNNETIYTVA--VDAPQ--------GLNVKVIPEELQFTKSGQKLSYQVTFTSA 738 (773)
Q Consensus 683 ~~~~~~tvtn~~~~~~~ty~~~--~~~~~--------g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 738 (773)
....+++|+|.+ +. .|.+. ++... ..-+.|+|..+++ ++++++.+.|.....
T Consensus 43 ~k~~sl~l~N~~-~~--P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl-~pg~~q~lRI~~~~~ 104 (257)
T 3q48_A 43 EREVTLRVSNTS-GT--PVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRV-EPNGGAVLRIAYLKA 104 (257)
T ss_dssp CSEEEEEEEECS-SS--CEEEEEEEESSCCSSCGGGGCCSEEEESSEEEE-CTTEEEEEEEEECCC
T ss_pred CcEEEEEEEeCC-CC--eEEEEEEEEcCCCccCcccccCCEEEcCCEEEE-CCCCceEEEEEECCC
Confidence 456889999988 54 45443 44321 2347889999999 678999998876543
No 77
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=20.23 E-value=52 Score=29.56 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=28.1
Q ss_pred eeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 004113 543 NVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKS 576 (773)
Q Consensus 543 ~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~ 576 (773)
..+.|-| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 70 l~f~adS-DA~IvkGl~alL~~~~~G~tp~eIl~ 102 (141)
T 3g0m_A 70 IELQGDS-DAAIVKGLMAVVFILYHQMTAQDIVH 102 (141)
T ss_dssp EEEEEEE-SSHHHHHHHHHHHHHHTTCBHHHHHH
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4556666 48999999999999999999999965
Done!