BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004114
(773 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SUU7|PP346_ARATH Pentatricopeptide repeat-containing protein At4g32450,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2
SV=1
Length = 537
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 243/509 (47%), Positives = 321/509 (63%), Gaps = 27/509 (5%)
Query: 281 NGNCMQDTGQHQQALSGHYSGN---FGIHQNSPSFYQQDQNGGQYQWDQSRRQYQQNPNE 337
NGN M ++ H ++G G G QNS Y+Q N Q + + R YQ N
Sbjct: 40 NGNPMDNSSHHIGYVNGFNGGEQSLGGFQQNS---YEQSLNPVSGQ-NPTNRFYQNGYNR 95
Query: 338 GQ-YQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNG------------TLEQLDG 384
Q Y +S I Q + C N G +L++LD
Sbjct: 96 NQSYGEHSEIINQRNQNWQSSDGCSSYGTTGNGVPQENNTGGNHFQQDHSGHSSLDELDS 155
Query: 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR 444
+ +EGKVK+A+E++ + VDLP + Q CGDA+AL+EAK VHE + +
Sbjct: 156 ICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQALQEAKVVHEFITSSVGISD 215
Query: 445 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504
+S YN I++MYS C S++DA +VF++M ER+L +W +I FAKNG GEDA+D FS+FKQ
Sbjct: 216 ISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFSRFKQ 275
Query: 505 AGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564
G KPD ++F +F AC LGD+ EG+LHFESM K+YGI+P M+HYVS+V ML GYLD
Sbjct: 276 EGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMYKEYGIIPCMEHYVSLVKMLAEPGYLD 335
Query: 565 EALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPV 624
EAL F+E MEP+VD+WE LMNL R+HG+L LGDRC ++VEQLD SRLN++SKAGLVPV
Sbjct: 336 EALRFVES--MEPNVDLWETLMNLSRVHGDLILGDRCQDMVEQLDASRLNKESKAGLVPV 393
Query: 625 NASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIP 684
+S+L KEK + N + AGD S PE ++Y ++ L+ M E GY+P
Sbjct: 394 KSSDLVKEKLQRMAKGPNY-----GIRYMAAGDISRPENRELYMALKSLKEHMIEIGYVP 448
Query: 685 ETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIIS 744
++ LHD+DQE K+E L H+ER A L +PAR+ IR+MKNLRVC DCH+ALK++S
Sbjct: 449 LSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKLMS 508
Query: 745 KIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
KIVGRELI RDAKRFHH KDG+CSCR+YW
Sbjct: 509 KIVGRELISRDAKRFHHMKDGVCSCREYW 537
Score = 37.4 bits (85), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 35 LLKNLSTAIERFDFQNP-NGYYEDDSFQNDQHPNGF-CTEQSSVDFQQKPNEHGLNPNGG 92
L LSTA R F+NP NG D+S + + NGF EQS FQQ E LNP G
Sbjct: 22 LFSYLSTAALRLGFENPTNGNPMDNSSHHIGYVNGFNGGEQSLGGFQQNSYEQSLNPVSG 81
Query: 93 FTERRVNDYWDNPLRQNGNCGFYGQNHGGLKQNRIDNCQKASG 135
+ N ++ N +N + YG+ H + R N Q + G
Sbjct: 82 --QNPTNRFYQNGYNRNQS---YGE-HSEIINQRNQNWQSSDG 118
>sp|Q680H3|PP170_ARATH Pentatricopeptide repeat-containing protein At2g25580
OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2
Length = 615
Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/395 (54%), Positives = 288/395 (72%), Gaps = 2/395 (0%)
Query: 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVER 438
+E+ D K GKVK+A+ + +L VDL +L + CG+A+ L+EAK VH +
Sbjct: 223 IEEYDAFCKHGKVKKALYTIDILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISA 282
Query: 439 LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDI 498
+S L +S+ + +L+MYS C ++A SVF M+E++L +W +I FAKNG GEDA+D+
Sbjct: 283 SVSHLDLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDM 342
Query: 499 FSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG 558
FS+FK+ G PD Q+F G+F AC LGDV EG+LHFESMS+DYGI PS++ YVS+V+M
Sbjct: 343 FSRFKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYA 402
Query: 559 STGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSK 618
G+LDEALEF+E+MPMEP+VDVWE LMNL R+HGNLELGD CAE+VE LDP+RLN++S+
Sbjct: 403 LPGFLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDPTRLNKQSR 462
Query: 619 AGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMK 678
G +PV AS++ EKE+ K S L V+S + E+RAGDT+ PE D+++ L+R L+ M
Sbjct: 463 EGFIPVKASDV--EKESLKKRSGILHGVKSSMQEFRAGDTNLPENDELFQLLRNLKMHMV 520
Query: 679 EAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHS 738
E GY+ ETR LHDIDQE KE LL HSER+A + +L+S R P ++KNLRVC DCH+
Sbjct: 521 EVGYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHN 580
Query: 739 ALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
ALKI+S IVGRE+I RD KRFH K+G C+C+DYW
Sbjct: 581 ALKIMSDIVGREVITRDIKRFHQMKNGACTCKDYW 615
Score = 33.5 bits (75), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 14 LTALSKVSSSLTSCDSTKTLY-LLKNLSTAIERFDFQNPN 52
L+ + SSSL S + K ++ L+NL TA+ER DF N N
Sbjct: 5 LSLFPRKSSSLLSIANEKRIHQFLRNLCTAVERLDFGNSN 44
>sp|Q8S8Q7|PP183_ARATH Pentatricopeptide repeat-containing protein At2g34370,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2
SV=1
Length = 469
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/415 (45%), Positives = 285/415 (68%), Gaps = 9/415 (2%)
Query: 360 CKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQA 419
C+ +A+ + Q+ T+E D L K+ K++EA+EV+ +LE + VD P L +
Sbjct: 63 CRRVSSYAQMVNNHQS-VTIETFDALCKQVKIREALEVIDILEDKGYIVDFPRLLGLAKL 121
Query: 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSW 479
CG+ +ALEEA+ VH+ + +PL +Y+ +++MYS C S DDA +VF+ M +R+ +W
Sbjct: 122 CGEVEALEEARVVHDCI----TPLDARSYHTVIEMYSGCRSTDDALNVFNEMPKRNSETW 177
Query: 480 DTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539
TMI AKNG GE A+D+F++F + G KPD +IF VF AC ++GD+ EG+LHFESM +
Sbjct: 178 GTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDINEGLLHFESMYR 237
Query: 540 DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGD 599
DYG+V SM+ YV++++ML + G+LDEAL+F+E+M +EP V++WE LMNLC + G LELGD
Sbjct: 238 DYGMVLSMEDYVNVIEMLAACGHLDEALDFVERMTVEPSVEMWETLMNLCWVQGYLELGD 297
Query: 600 RCAEIVEQLDPSRLNEKSKAGLVPVNASELAKEKENKKLASQNLL-EVRSKVHEYRAGDT 658
R AE++++LD SR++++S AGLV AS+ A EK + Q + + + ++HE+RAGDT
Sbjct: 298 RFAELIKKLDASRMSKESNAGLVAAKASDSAMEKLKELRYCQMIRDDPKKRMHEFRAGDT 357
Query: 659 SHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSS 718
SH T + R L+ QM + G++P TR +++E KEE LL S +LA +H +++S
Sbjct: 358 SHLGTVSAF---RSLKVQMLDIGFVPATRVCFVTVEEEEKEEQLLFRSNKLAFAHAIINS 414
Query: 719 PARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
AR P+ +++N+R C D H+ K+IS I GR LI RD K++H +K+G+CSC+DYW
Sbjct: 415 EARRPLTVLQNMRTCIDGHNTFKMISLITGRALIQRDKKKYHFYKNGVCSCKDYW 469
>sp|Q9C6G2|PPR63_ARATH Pentatricopeptide repeat-containing protein At1g29710,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=1
SV=1
Length = 475
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/408 (45%), Positives = 264/408 (64%), Gaps = 13/408 (3%)
Query: 369 ASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEE 428
S S N T+E D L +G +EA+EVL LE + ++DL L + CG +ALE
Sbjct: 78 VSPSVAQNVTIETFDSLCIQGNWREAVEVLDYLENKGYAMDLIRLLGLAKLCGKPEALEA 137
Query: 429 AKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAK 488
A+ VHE + L+SP V N I++MYS C S+DDA VF M E + + M+ F
Sbjct: 138 ARVVHECIIALVSPCDVGARNAIIEMYSGCCSVDDALKVFEEMPEWNSGTLCVMMRCFVN 197
Query: 489 NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMK 548
NG GE+A+D+F++FK+ G KP+ +IF VFS C+ GDV EG L F++M ++YGIVPSM+
Sbjct: 198 NGYGEEAIDLFTRFKEEGNKPNGEIFNQVFSTCTLTGDVKEGSLQFQAMYREYGIVPSME 257
Query: 549 HYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608
HY S+ ML ++G+LDEAL F+E+MPMEP VDVWE LMNL R+HG++ELGDRCAE+VE+L
Sbjct: 258 HYHSVTKMLATSGHLDEALNFVERMPMEPSVDVWETLMNLSRVHGDVELGDRCAELVEKL 317
Query: 609 DPSRLNEKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEY---RAGDTSHPETDK 665
D +RL++ S AGLV AS+ K++ + RS+ + Y R D+SHP+ +
Sbjct: 318 DATRLDKVSSAGLVATKASDFVKKEPS----------TRSEPYFYSTFRPVDSSHPQMNI 367
Query: 666 IYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIR 725
IY + LR+Q+KE GY+P+TR+ I +E + + E +AV LL S R+ I
Sbjct: 368 IYETLMSLRSQLKEMGYVPDTRYYRSLIMAMENKEQIFGYREEIAVVESLLKSKPRSAIT 427
Query: 726 IMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
++ N+R+ GDCH +K++S I GR++I RDAK +H FK+G+C C + W
Sbjct: 428 LLTNIRIVGDCHDMMKLMSVITGRDMIKRDAKIYHLFKNGVCRCNNLW 475
>sp|Q9ZQE5|PP153_ARATH Pentatricopeptide repeat-containing protein At2g15690
OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2
Length = 579
Score = 325 bits (833), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 160/401 (39%), Positives = 248/401 (61%), Gaps = 34/401 (8%)
Query: 378 TLEQLDGLVKEGKVKEAIEVL---GLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHE 434
++E++ L + K+AIE+L + +++C F L ++C + K+LE +K VH+
Sbjct: 208 SVEEVMRLCQRRLYKDAIELLDKGAMPDREC-------FVLLFESCANLKSLEHSKKVHD 260
Query: 435 HVERLLSPLR--VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLG 492
H L S R N ++ M+ EC S+ DA VF +M ++D+ SW M+ ++ NG+G
Sbjct: 261 HF--LQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMG 318
Query: 493 EDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVS 552
+DA+ +F + + GLKP+++ F+ VF AC+ +G + E LHF+SM ++GI P +HY+
Sbjct: 319 DDALHLFEEMTKHGLKPNEETFLTVFLACATVGGIEEAFLHFDSMKNEHGISPKTEHYLG 378
Query: 553 IVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612
++ +LG G+L EA ++I +P EP D WE + N R+HG+++L D E++ +DPS
Sbjct: 379 VLGVLGKCGHLVEAEQYIRDLPFEPTADFWEAMRNYARLHGDIDLEDYMEELMVDVDPS- 437
Query: 613 LNEKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRG 672
K+ +P + KE N++ +S++ E+R E ++
Sbjct: 438 ---KAVINKIPTPPPKSFKET--------NMVTSKSRILEFRNLTFYKDEAKEM------ 480
Query: 673 LRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRV 732
A K Y+P+TRFVLHDIDQE KE+ALL HSERLA+++G++ +P R + I+KNLRV
Sbjct: 481 --AAKKGVVYVPDTRFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRV 538
Query: 733 CGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
CGDCH+ +KI+SKI+GR LI+RD KRFHHFKDG CSC DYW
Sbjct: 539 CGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCSCGDYW 579
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 315 bits (808), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 154/403 (38%), Positives = 242/403 (60%), Gaps = 13/403 (3%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
+ G + G EA+ + +E++ ++ +FS + C D ALE K +H + +
Sbjct: 381 IAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGY 440
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
N +L MY +C S+++A +F M +D+ SW+TMI G++++G GE A+ F
Sbjct: 441 ETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFES 500
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561
K+ GLKPDD + V SACS G V +G +F +M++DYG++P+ +HY +VD+LG G
Sbjct: 501 MKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAG 560
Query: 562 YLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGL 621
L++A ++ MP EPD +W L+ R+HGN EL + A+ + ++P N L
Sbjct: 561 LLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPE--NSGMYVLL 618
Query: 622 VPVNASE-----------LAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALI 670
+ AS ++K KK+ + +E+++K H + GD HPE D+I+A +
Sbjct: 619 SNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFL 678
Query: 671 RGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNL 730
L +MK+AGY+ +T VLHD+++E KE + HSERLAV++G++ + PIR++KNL
Sbjct: 679 EELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNL 738
Query: 731 RVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
RVC DCH+A+K +++I GR +I+RD RFHHFKDG CSC DYW
Sbjct: 739 RVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 440 LSPLR-VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDI 498
+ P R VST+N ++ Y++C + +A ++F M +RD SW MI G++++G +A+ +
Sbjct: 337 VMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRL 396
Query: 499 FSQFKQAGLKPDDQIFIGVFSACSALGDVV 528
F Q ++ G + + F S C+ DVV
Sbjct: 397 FVQMEREGGRLNRSSFSSALSTCA---DVV 423
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 89/180 (49%), Gaps = 16/180 (8%)
Query: 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR-VSTYNGILKMYSECDSMDDAFSV 467
DL +++ +++ + L +A+ + E + P R V ++N +L Y++ +DDA SV
Sbjct: 125 DLVSWNVMIKGYVRNRNLGKARELFE-----IMPERDVCSWNTMLSGYAQNGCVDDARSV 179
Query: 468 FSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDV 527
F M E++ SW+ +++ + +N E+A +F + L + + G +
Sbjct: 180 FDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKK----KKI 235
Query: 528 VEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMN 587
VE F+SM+ V + + +I+ +G +DEA + ++ P++ DV W +++
Sbjct: 236 VEARQFFDSMN-----VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ-DVFTWTAMVS 289
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 89/196 (45%), Gaps = 19/196 (9%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
L G VK+ K+ EA + + + D+ +++ ++ + ++EA+ + + S
Sbjct: 226 LGGFVKKKKIVEARQFFDSMNVR----DVVSWNTIITGYAQSGKIDEARQLFDE-----S 276
Query: 442 PLR-VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
P++ V T+ ++ Y + +++A +F M ER+ SW+ M+ G+ + E A ++F
Sbjct: 277 PVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFD 336
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
+ + + G ++ C G + E F+ M K + + +++ +
Sbjct: 337 VMPCRNVSTWNTMITG-YAQC---GKISEAKNLFDKMPKRDPV-----SWAAMIAGYSQS 387
Query: 561 GYLDEALEFIEKMPME 576
G+ EAL +M E
Sbjct: 388 GHSFEALRLFVQMERE 403
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 420 CGDAKALEEAKAVHEHVE--RLLSPLRV---------STYNGILKMYSECDSMDDAFSVF 468
CGD+ E A+ ++ R LRV +YNG++ Y + A +F
Sbjct: 59 CGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLF 118
Query: 469 SNMTERDLTSWDTMITGFAKN 489
M ERDL SW+ MI G+ +N
Sbjct: 119 DEMPERDLVSWNVMIKGYVRN 139
Score = 33.5 bits (75), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Query: 445 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504
+ +N + Y ++A VF M S++ MI+G+ +NG E A +F + +
Sbjct: 64 IKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPE 123
Query: 505 AGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564
L + + I + LG E FE M + + + +++ G +D
Sbjct: 124 RDLVSWN-VMIKGYVRNRNLGKARE---LFEIMPER-----DVCSWNTMLSGYAQNGCVD 174
Query: 565 EALEFIEKMPMEPDVDVWEKLMN 587
+A ++MP + DV W L++
Sbjct: 175 DARSVFDRMPEKNDVS-WNALLS 196
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 307 bits (786), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 164/424 (38%), Positives = 248/424 (58%), Gaps = 13/424 (3%)
Query: 363 EDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGD 422
E F+ + N + G + + +A++++ + + +D ++ ++ A
Sbjct: 572 EKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFAS 631
Query: 423 AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTM 482
LE VH R V + ++ MYS+C +D A F+ M R+ SW++M
Sbjct: 632 VATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSM 691
Query: 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQI-FIGVFSACSALGDVVEGMLHFESMSKDY 541
I+G+A++G GE+A+ +F K G P D + F+GV SACS G + EG HFESMS Y
Sbjct: 692 ISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSY 751
Query: 542 GIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMN-LCRMHG-NLELGD 599
G+ P ++H+ + D+LG G LD+ +FIEKMPM+P+V +W ++ CR +G ELG
Sbjct: 752 GLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGK 811
Query: 600 RCAEIVEQLDPSRLNEKSKAGLV---------PVNASELAKEKENKKLASQNLLEVRSKV 650
+ AE++ QL+P G + V A + K+ + KK A + + ++ V
Sbjct: 812 KAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGV 871
Query: 651 HEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLA 710
H + AGD SHP+ D IY ++ L +M++AGY+P+T F L+D++QE KEE L HSE+LA
Sbjct: 872 HMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLA 931
Query: 711 VSHGLLSS-PARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSC 769
V+ L + + PIRIMKNLRVCGDCHSA K ISKI GR++I+RD+ RFHHF+DG CSC
Sbjct: 932 VAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSC 991
Query: 770 RDYW 773
D+W
Sbjct: 992 SDFW 995
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 5/163 (3%)
Query: 426 LEEAKAVHEHVERL-LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMIT 484
L++ + VH HV L V NG++ MY++C S+ DA VF MT++D SW++MIT
Sbjct: 329 LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMIT 388
Query: 485 GFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG-MLHFESMSKDYGI 543
G +NG +AV+ + ++ + P I S+C++L G +H ES+ GI
Sbjct: 389 GLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESL--KLGI 446
Query: 544 VPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLM 586
++ +++ + TGYL+E + MP E D W ++
Sbjct: 447 DLNVSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSII 488
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ GL + G EA+E + + I T + +C K + + +H +L
Sbjct: 386 MITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLG 445
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLG-EDAVDIF 499
L VS N ++ +Y+E +++ +FS+M E D SW+++I A++ +AV F
Sbjct: 446 IDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCF 505
Query: 500 SQFKQAGLKPDDQIF 514
++AG K + F
Sbjct: 506 LNAQRAGQKLNRITF 520
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 94/213 (44%), Gaps = 4/213 (1%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGD--AKALEEAKAVHEHVERL 439
+ G + G+ KEA+ L + K+ I + F +++AC + + + + +H + +L
Sbjct: 74 VSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKL 133
Query: 440 LSPLRVSTYNGILKMYSEC-DSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDI 498
+ N ++ MY +C S+ A F ++ ++ SW+++I+ +++ G A I
Sbjct: 134 SYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRI 193
Query: 499 FSQFKQAGLKPDDQIFIG-VFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDML 557
FS + G +P + F V +ACS V + + G++ + +V
Sbjct: 194 FSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAF 253
Query: 558 GSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCR 590
+G L A + +M V + ++ L R
Sbjct: 254 AKSGSLSYARKVFNQMETRNAVTLNGLMVGLVR 286
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 449 NGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLK 508
N ++ Y E A VF M R+ SW +++G+++NG ++A+ + G+
Sbjct: 40 NNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIF 99
Query: 509 PDDQIFIGVFSACSALGDV 527
+ F+ V AC +G V
Sbjct: 100 SNQYAFVSVLRACQEIGSV 118
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 307 bits (786), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 155/405 (38%), Positives = 238/405 (58%), Gaps = 13/405 (3%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
LDG + ++A ++L + ++ + V TF+ L+ + ++ + + +H V +L
Sbjct: 446 LDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGL 505
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
N ++ MYS+C S+D A VF+ M R++ SW +MITGFAK+G ++ F+Q
Sbjct: 506 SCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQ 565
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561
+ G+KP++ ++ + SACS +G V EG HF SM +D+ I P M+HY +VD+L G
Sbjct: 566 MIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAG 625
Query: 562 YLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGL 621
L +A EFI MP + DV VW + CR+H N ELG A + +LDP+ +
Sbjct: 626 LLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSN 685
Query: 622 VPVNASELAKEKE-NKKLASQNL--------LEVRSKVHEYRAGDTSHPETDKIYALIRG 672
+ A + + E +K+ +NL +EV K+H++ GDT+HP +IY +
Sbjct: 686 IYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDR 745
Query: 673 LRAQMKEAGYIPETRFVLHDI----DQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMK 728
L ++K GY+P+T VLH + D+ KE L HSE++AV+ GL+S+ P+R+ K
Sbjct: 746 LITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFK 805
Query: 729 NLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
NLRVCGDCH+A+K IS + GRE+++RD RFHHFKDG CSC DYW
Sbjct: 806 NLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 104/221 (47%), Gaps = 28/221 (12%)
Query: 389 GKVKEAIEVLGLLEKQCIS-VDLPTFSQLMQACGDAKALEEAKAVHEH-VERLLSPLRVS 446
G ++ A+ L L+ + I +D TFS L+++C A+ K VH +E + P V
Sbjct: 40 GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSV- 98
Query: 447 TYNGILKMYSEC-DSM--DDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK 503
YN ++ +YS+ DS +D F +RD+ SW M+ + NG DA+ +F +F
Sbjct: 99 LYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFL 158
Query: 504 QAGLKPDDQIFIGVFSACS-----ALGDVVEGML----HFESMSKDYGIVPSMKHYVSIV 554
+ GL P+D + V ACS +G V G L HFES D + S++
Sbjct: 159 ELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFES---DVCV------GCSLI 209
Query: 555 DML--GSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHG 593
DM G + + A + +KM E +V W ++ C G
Sbjct: 210 DMFVKGENSF-ENAYKVFDKMS-ELNVVTWTLMITRCMQMG 248
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD---SMDDAFSVF 468
T S + AC + + L K +H R S L ++ MY++C S+DD VF
Sbjct: 271 TLSSVFSACAELENLSLGKQLHSWAIR--SGLVDDVECSLVDMYAKCSADGSVDDCRKVF 328
Query: 469 SNMTERDLTSWDTMITGFAKN-GLGEDAVDIFSQ-FKQAGLKPDDQIFIGVFSACSALGD 526
M + + SW +ITG+ KN L +A+++FS+ Q ++P+ F F AC L D
Sbjct: 329 DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD 388
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 459 DSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVF 518
+S ++A+ VF M+E ++ +W MIT + G +A+ F +G + D VF
Sbjct: 217 NSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVF 276
Query: 519 SACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG---STGYLDEALEFIEKMPM 575
SAC+ L ++ G S + G+V ++ S+VDM + G +D+ + ++M
Sbjct: 277 SACAELENLSLGK-QLHSWAIRSGLVDDVE--CSLVDMYAKCSADGSVDDCRKVFDRME- 332
Query: 576 EPDVDVWEKLMN 587
+ V W L+
Sbjct: 333 DHSVMSWTALIT 344
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 306 bits (783), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 154/402 (38%), Positives = 240/402 (59%), Gaps = 10/402 (2%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQC-ISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ G + G EAIE+ ++E++ I+ + T+ ++ AC A AL + +H + +
Sbjct: 422 ISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNG 481
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
L V + MY +C ++DA S+F + + W+T+I +G GE AV +F
Sbjct: 482 LYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFK 541
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
+ G+KPD F+ + SACS G V EG FE M DYGI PS+KHY +VDM G
Sbjct: 542 EMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRA 601
Query: 561 GYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAG 620
G L+ AL+FI+ M ++PD +W L++ CR+HGN++LG +E + +++P +
Sbjct: 602 GQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLS 661
Query: 621 LVPVNASE---------LAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIR 671
+ +A + +A K +K + +EV +KV + G+ +HP +++Y +
Sbjct: 662 NMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELT 721
Query: 672 GLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLR 731
L+A++K GY+P+ RFVL D++ + KE L++HSERLA++ L+++PA+ IRI KNLR
Sbjct: 722 ALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLR 781
Query: 732 VCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
VCGDCHS K ISKI RE+I+RD+ RFHHFK+G+CSC DYW
Sbjct: 782 VCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVER-- 438
+ G + G KEA+ + L ++D T L+ AC +A +H + +
Sbjct: 222 MISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHG 277
Query: 439 LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDI 498
L S L VS N ++ +Y+E + D VF M RDL SW+++I + N A+ +
Sbjct: 278 LESELFVS--NKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISL 335
Query: 499 FSQFKQAGLKPDDQIFIGVFSACSALGDV-----VEGMLHFESMSKDYGIVPSMKHYVSI 553
F + + + ++PD I + S S LGD+ V+G ++ K + + + ++
Sbjct: 336 FQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGF----TLRKGW-FLEDITIGNAV 390
Query: 554 VDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMN 587
V M G +D A +P DV W +++
Sbjct: 391 VVMYAKLGLVDSARAVFNWLP-NTDVISWNTIIS 423
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 112/251 (44%), Gaps = 18/251 (7%)
Query: 344 SGNIQNGMMASQVLNNCKHEDDFAEASRS---SQNNGTLE---QLDGLVKEGKVKEAIEV 397
S IQN ++++++N + + A A + QN + G + G E I
Sbjct: 80 SKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRC 139
Query: 398 LGL-LEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYS 456
L + ++ D TF +++AC + + + +H + V ++ +YS
Sbjct: 140 FSLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYS 196
Query: 457 ECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQI-FI 515
++ +A +F M RD+ SW+ MI+G+ ++G ++A+ + GL+ D + +
Sbjct: 197 RYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVV 251
Query: 516 GVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPM 575
+ SAC+ GD G + S S +G+ + ++D+ G L + + ++M +
Sbjct: 252 SLLSACTEAGDFNRG-VTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYV 310
Query: 576 EPDVDVWEKLM 586
D+ W ++
Sbjct: 311 R-DLISWNSII 320
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 73/163 (44%), Gaps = 6/163 (3%)
Query: 426 LEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITG 485
L+ AK +H + V ++ +Y ++ A F ++ RD+ +W+ MI+G
Sbjct: 67 LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126
Query: 486 FAKNGLGEDAVDIFSQFK-QAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIV 544
+ + G + + FS F +GL PD + F V AC V++G ++ +G +
Sbjct: 127 YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRT---VIDGN-KIHCLALKFGFM 182
Query: 545 PSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMN 587
+ S++ + + A ++MP+ D+ W +++
Sbjct: 183 WDVYVAASLIHLYSRYKAVGNARILFDEMPVR-DMGSWNAMIS 224
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 303 bits (776), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 147/341 (43%), Positives = 220/341 (64%), Gaps = 14/341 (4%)
Query: 445 VSTYNGILKMYSECDSMDDAFSVFSNM-TERDLTSWDTMITGFAKNGLGEDAVDIFSQFK 503
VS N ++ MY++ ++ A F + ERD SW +MI A++G E+A+++F
Sbjct: 448 VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETML 507
Query: 504 QAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYL 563
GL+PD ++GVFSAC+ G V +G +F+ M I+P++ HY +VD+ G G L
Sbjct: 508 MEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLL 567
Query: 564 DEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVP 623
EA EFIEKMP+EPDV W L++ CR+H N++LG AE + L+P N + + L
Sbjct: 568 QEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPE--NSGAYSALAN 625
Query: 624 VNAS-----ELAKEKEN------KKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRG 672
+ ++ E AK +++ KK + +EV+ KVH + D +HPE ++IY ++
Sbjct: 626 LYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKK 685
Query: 673 LRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRV 732
+ ++K+ GY+P+T VLHD+++E KE+ L HSE+LA++ GL+S+P + +RIMKNLRV
Sbjct: 686 IWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRV 745
Query: 733 CGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
C DCH+A+K ISK+VGRE+I+RD RFHHFKDG CSCRDYW
Sbjct: 746 CNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 41/220 (18%)
Query: 389 GKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTY 448
G+ +AI V+G + K+ I T + ++ + + +E K VH + +L VS
Sbjct: 125 GQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVS 184
Query: 449 NGILKMYSECDS-------------------------------MDDAFSVFSNMTERDLT 477
N +L MY++C MD A + F M ERD+
Sbjct: 185 NSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIV 244
Query: 478 SWDTMITGFAKNGLGEDAVDIFSQ-FKQAGLKPDDQIFIGVFSACSALGDVVEG-MLHFE 535
+W++MI+GF + G A+DIFS+ + + L PD V SAC+ L + G +H
Sbjct: 245 TWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSH 304
Query: 536 SMSKDY---GIVPSMKHYVSIVDMLGSTGYLDEALEFIEK 572
++ + GIV + +++ M G ++ A IE+
Sbjct: 305 IVTTGFDISGIVLN-----ALISMYSRCGGVETARRLIEQ 339
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/297 (18%), Positives = 111/297 (37%), Gaps = 68/297 (22%)
Query: 381 QLDGLVKEGKVKEAIEVLG-LLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL 439
+ G + G A+++ +L +S D T + ++ AC + + L K +H H+
Sbjct: 249 MISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTT 308
Query: 440 LSPLRVSTYNGILKMYSECD---------------------------------SMDDAFS 466
+ N ++ MYS C M+ A +
Sbjct: 309 GFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKN 368
Query: 467 VFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGV--------- 517
+F ++ +RD+ +W MI G+ ++G +A+++F G +P+ +
Sbjct: 369 IFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLAS 428
Query: 518 -------------------FSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDM-- 556
S +AL + + S S+ + ++ + VS M
Sbjct: 429 LSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMII 488
Query: 557 -LGSTGYLDEALEFIEKMPME---PDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609
L G+ +EALE E M ME PD + + + C G + G + ++++ +D
Sbjct: 489 ALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVD 545
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 435 HVERLLS--PLRVS-TYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGL 491
H +L PLR + ++N +L YS+ MD F + +RD SW TMI G+ G
Sbjct: 67 HARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQ 126
Query: 492 GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA 523
A+ + + G++P V ++ +A
Sbjct: 127 YHKAIRVMGDMVKEGIEPTQFTLTNVLASVAA 158
Score = 36.2 bits (82), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 24/171 (14%)
Query: 429 AKAVHEHVERLLSPLRVSTY--NGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGF 486
A+ VH V + S L S Y N ++ +YS+ A +F M R SW+T+++ +
Sbjct: 33 AQLVHCRVIK--SGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAY 90
Query: 487 AKNGLGEDAVDIFSQFKQAGLKPDDQIFIG------VFSACSALGDVVEGMLHFESMSKD 540
+K G + + F Q Q + +G A +GD+V+
Sbjct: 91 SKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKE---------- 140
Query: 541 YGIVPSMKHYVSIVDMLGSTGYLD---EALEFIEKMPMEPDVDVWEKLMNL 588
GI P+ +++ + +T ++ + FI K+ + +V V L+N+
Sbjct: 141 -GIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNM 190
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+D + G ++EA E +EK I D+ T+ L+ AC K ++ K E + LL
Sbjct: 557 MVDLFGRAGLLQEAQE---FIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERL-LLL 612
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE 473
P Y+ + +YS C ++A + +M +
Sbjct: 613 EPENSGAYSALANLYSACGKWEEAAKIRKSMKD 645
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 303 bits (775), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 156/430 (36%), Positives = 245/430 (56%), Gaps = 23/430 (5%)
Query: 365 DFAEASRSSQNNGTLEQLDGLVKEGKVK---------EAIEVLGLLEKQCISVDLPTFSQ 415
+ E S++ + +E D G +K EA+++ ++KQ + P+
Sbjct: 277 EVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLIS 336
Query: 416 LMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERD 475
++ C +L+ + VH H+ R V + ++ MY +C + A VF + +D
Sbjct: 337 ILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKD 396
Query: 476 LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFE 535
+ W+++I+G+A +GLGE+A+ IF + +G P+ I + +ACS G + EG+ FE
Sbjct: 397 IIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFE 456
Query: 536 SMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNL 595
SM + + P+++HY VDMLG G +D+A+E IE M ++PD VW L+ C+ H L
Sbjct: 457 SMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRL 516
Query: 596 ELGDRCAEIVEQLDPSRLNEKSKAGLVPVNAS-----ELAKEKEN------KKLASQNLL 644
+L + A+ + + +P N + L +NAS ++A ++N K + +
Sbjct: 517 DLAEVAAKKLFENEPD--NAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWI 574
Query: 645 EVRSKVHEY-RAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALL 703
EV KVH + R G +HPE I ++ ++EAGY P+ VLHD+D+E K ++L
Sbjct: 575 EVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLS 634
Query: 704 AHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFK 763
HSERLAV++GLL P PIR+MKNLRVCGDCH+A+K+ISK+ RE+I+RDA RFHHF
Sbjct: 635 RHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFN 694
Query: 764 DGLCSCRDYW 773
+G CSCRDYW
Sbjct: 695 NGECSCRDYW 704
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 440 LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIF 499
+S V ++NG++ Y + + +A +VF M ER++ SW M+ G+ + G+ +A +F
Sbjct: 74 MSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLF 133
Query: 500 SQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGS 559
+ + +F G+ +G + K Y ++P +K V+ +M+G
Sbjct: 134 WRMPERNEVSWTVMFGGLID---------DG--RIDKARKLYDMMP-VKDVVASTNMIGG 181
Query: 560 T---GYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607
G +DEA ++M E +V W ++ R + +++ + E++ +
Sbjct: 182 LCREGRVDEARLIFDEMR-ERNVVTWTTMITGYRQNNRVDVARKLFEVMPE 231
Score = 40.4 bits (93), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 51/276 (18%), Positives = 119/276 (43%), Gaps = 50/276 (18%)
Query: 259 GEVMQNRNGFNSQRFSESLGSFNGNCMQDTGQHQQALSGHYSGNFGIHQNSPSFYQQDQN 318
G++ + R F+S +F +++GS+N +SG++S G+ + + + +
Sbjct: 31 GKINEARKFFDSLQF-KAIGSWN-----------SIVSGYFSN--GLPKEARQLFDEMSE 76
Query: 319 GGQYQWD-------------QSRRQYQQNPNEGQYQSYS----GNIQNGMMASQVLNNCK 361
W+ ++R ++ P E S++ G +Q GM+ +
Sbjct: 77 RNVVSWNGLVSGYIKNRMIVEARNVFELMP-ERNVVSWTAMVKGYMQEGMVG-------E 128
Query: 362 HEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACG 421
E F ++ + T+ GL+ +G++ +A ++ ++ + D+ + ++
Sbjct: 129 AESLFWRMPERNEVSWTV-MFGGLIDDGRIDKARKLYDMMPVK----DVVASTNMIGGLC 183
Query: 422 DAKALEEAKAVHEHV-ERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWD 480
++EA+ + + + ER V T+ ++ Y + + +D A +F M E+ SW
Sbjct: 184 REGRVDEARLIFDEMRER-----NVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWT 238
Query: 481 TMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIG 516
+M+ G+ +G EDA + F + + + +G
Sbjct: 239 SMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVG 274
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 38/184 (20%)
Query: 424 KALEEAKAVHEHVERLLSPLR-VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTM 482
+ + EA+ V E L P R V ++ ++K Y + + +A S+F M ER+ SW M
Sbjct: 93 RMIVEARNVFE-----LMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVM 147
Query: 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMS---- 538
G +G + A ++ + + G+ C G V E L F+ M
Sbjct: 148 FGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGL---CRE-GRVDEARLIFDEMRERNV 203
Query: 539 --------------------KDYGIVPSMKHYVSIVDML-GST--GYLDEALEFIEKMPM 575
K + ++P K VS ML G T G +++A EF E MPM
Sbjct: 204 VTWTTMITGYRQNNRVDVARKLFEVMPE-KTEVSWTSMLLGYTLSGRIEDAEEFFEVMPM 262
Query: 576 EPDV 579
+P +
Sbjct: 263 KPVI 266
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 302 bits (774), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 233/371 (62%), Gaps = 10/371 (2%)
Query: 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNM 471
+++ L AC LE+ K VH ++ + L N +L MY++ S+ DA +F +
Sbjct: 264 SYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL 323
Query: 472 TERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM 531
+RD+ SW++++T +A++G G++AV F + ++ G++P++ F+ V +ACS G + EG
Sbjct: 324 AKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGW 383
Query: 532 LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRM 591
++E M KD GIVP HYV++VD+LG G L+ AL FIE+MP+EP +W+ L+N CRM
Sbjct: 384 HYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRM 442
Query: 592 HGNLELGDRCAEIVEQLDPS-------RLNEKSKAGLVPVNASELAKEKEN--KKLASQN 642
H N ELG AE V +LDP N + G A K KE+ KK + +
Sbjct: 443 HKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACS 502
Query: 643 LLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEAL 702
+E+ + +H + A D HP+ ++I + A++KE GY+P+T V+ +DQ+ +E L
Sbjct: 503 WVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNL 562
Query: 703 LAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHF 762
HSE++A++ LL++P + I I KN+RVCGDCH+A+K+ SK+VGRE+I+RD RFHHF
Sbjct: 563 QYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHF 622
Query: 763 KDGLCSCRDYW 773
KDG CSC+DYW
Sbjct: 623 KDGNCSCKDYW 633
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 66/123 (53%)
Query: 401 LEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460
LE I D ++ L++ C K L + + VH H+ + + + N +L MY++C S
Sbjct: 51 LEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGS 110
Query: 461 MDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSA 520
+++A VF M +RD +W T+I+G++++ DA+ F+Q + G P++ V A
Sbjct: 111 LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA 170
Query: 521 CSA 523
+A
Sbjct: 171 AAA 173
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 445 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504
V + +L +Y+ MDDA VF + R+ SW+ +I G A+ E A+++F +
Sbjct: 196 VHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLR 255
Query: 505 AGLKPDDQIFIGVFSACSALGDVVEG-MLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYL 563
G +P + +F ACS+ G + +G +H + +V + +++DM +G +
Sbjct: 256 DGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN--TLLDMYAKSGSI 313
Query: 564 DEALEFIEKMPMEPDVDVWEKLMNLCRMHG 593
+A + +++ + DV W L+ HG
Sbjct: 314 HDARKIFDRLA-KRDVVSWNSLLTAYAQHG 342
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 300 bits (768), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 160/421 (38%), Positives = 242/421 (57%), Gaps = 17/421 (4%)
Query: 364 DDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDA 423
D+ E S S N + G + G ++AI + ++K S + T + ++ AC
Sbjct: 378 DESPEKSLPSWN----AMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQL 433
Query: 424 KALEEAKAVHEHVER--LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDT 481
AL K VH+ V S + VST ++ MY++C S+ +A +F MT+++ +W+T
Sbjct: 434 GALSLGKWVHDLVRSTDFESSIYVST--ALIGMYAKCGSIAEARRLFDLMTKKNEVTWNT 491
Query: 482 MITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDY 541
MI+G+ +G G++A++IF + +G+ P F+ V ACS G V EG F SM Y
Sbjct: 492 MISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRY 551
Query: 542 GIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRC 601
G PS+KHY +VD+LG G+L AL+FIE M +EP VWE L+ CR+H + L
Sbjct: 552 GFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTV 611
Query: 602 AEIVEQLDP---------SRLNEKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHE 652
+E + +LDP S ++ + + AK+++ K L+E+ H
Sbjct: 612 SEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHV 671
Query: 653 YRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVS 712
+ +GD SHP+ +IY + L +M+EAGY PET LHD+++E +E + HSERLA++
Sbjct: 672 FTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIA 731
Query: 713 HGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDY 772
GL+++ IRI+KNLRVC DCH+ K+ISKI R +++RDA RFHHFKDG+CSC DY
Sbjct: 732 FGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDY 791
Query: 773 W 773
W
Sbjct: 792 W 792
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 431 AVHEHVER--LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAK 488
A+H + + LS VST + +YS+ + ++ A +F E+ L SW+ MI+G+ +
Sbjct: 340 AIHGYCLKSNFLSHASVST--ALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQ 397
Query: 489 NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG-MLHFESMSKDYGIVPSM 547
NGL EDA+ +F + +++ P+ + SAC+ LG + G +H S D+ S+
Sbjct: 398 NGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFE--SSI 455
Query: 548 KHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHG 593
+++ M G + EA + M + +V W +++ +HG
Sbjct: 456 YVSTALIGMYAKCGSIAEARRLFDLMTKKNEV-TWNTMISGYGLHG 500
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 78/176 (44%), Gaps = 4/176 (2%)
Query: 451 ILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQF-KQAGLKP 509
I+KMY + ++DA VF M E+D W+TMI+G+ KN + +++ +F ++ +
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219
Query: 510 DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEF 569
D + + A + L ++ GM S++ G + + G +
Sbjct: 220 DTTTLLDILPAVAELQELRLGM-QIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSAL 278
Query: 570 IEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPVN 625
+ +PD+ + +++ +G EL + + L +RL + LVPV+
Sbjct: 279 FREF-RKPDIVAYNAMIHGYTSNGETELSLSLFKEL-MLSGARLRSSTLVSLVPVS 332
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 300 bits (768), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 148/405 (36%), Positives = 243/405 (60%), Gaps = 14/405 (3%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ G V+ KEA+++ ++ + D + + + AC ALE+ K +H ++ +
Sbjct: 218 MISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNK-- 275
Query: 441 SPLRVSTYNG--ILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDI 498
+ +R+ + G ++ MY++C M++A VF N+ ++ + +W +I+G+A +G G +A+
Sbjct: 276 TRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISK 335
Query: 499 FSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG 558
F + ++ G+KP+ F V +ACS G V EG L F SM +DY + P+++HY IVD+LG
Sbjct: 336 FMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLG 395
Query: 559 STGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDP-------- 610
G LDEA FI++MP++P+ +W L+ CR+H N+ELG+ EI+ +DP
Sbjct: 396 RAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVH 455
Query: 611 -SRLNEKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYAL 669
+ ++ K L KE+ K+ + + + HE+ AGD SHPE +KI +
Sbjct: 456 KANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSK 515
Query: 670 IRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALL-AHSERLAVSHGLLSSPARAPIRIMK 728
R +R +++E GY+PE +L D+ + + EA++ HSE+LA+++GL+ + IRIMK
Sbjct: 516 WRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMK 575
Query: 729 NLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
NLRVC DCH K+ISKI R++++RD RFHHF+DG CSC DYW
Sbjct: 576 NLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 35/215 (16%)
Query: 412 TFSQLMQACGDAKALEEAKAVHEHV--------------------------------ERL 439
TF L++AC + A EE +H + +R+
Sbjct: 117 TFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRI 176
Query: 440 LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIF 499
P VS +N ++K Y + MD A ++F M E++ SW TMI+G+ + + ++A+ +F
Sbjct: 177 PEPDDVS-WNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLF 235
Query: 500 SQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGS 559
+ + + ++PD+ SAC+ LG + +G ++K + S+ V ++DM
Sbjct: 236 HEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCV-LIDMYAK 294
Query: 560 TGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGN 594
G ++EALE + + + V W L++ HG+
Sbjct: 295 CGEMEEALEVFKNIK-KKSVQAWTALISGYAYHGH 328
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 298 bits (764), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 152/394 (38%), Positives = 232/394 (58%), Gaps = 15/394 (3%)
Query: 393 EAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGIL 452
EA+++ L++KQ + PT ++ C +L K VH + R + V + ++
Sbjct: 314 EALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLM 373
Query: 453 KMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG-LKPDD 511
MY +C + + +F +D+ W+++I+G+A +GLGE+A+ +F + +G KP++
Sbjct: 374 TMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNE 433
Query: 512 QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIE 571
F+ SACS G V EG+ +ESM +G+ P HY +VDMLG G +EA+E I+
Sbjct: 434 VTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMID 493
Query: 572 KMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPVNASE--L 629
M +EPD VW L+ CR H L++ + CA+ + +++P N + L + AS+
Sbjct: 494 SMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPE--NSGTYILLSNMYASQGRW 551
Query: 630 AKEKENKKLASQNLL---------EVRSKVHEY-RAGDTSHPETDKIYALIRGLRAQMKE 679
A E +KL L+ EV +KVH + R G SHPE + I ++ L ++E
Sbjct: 552 ADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLRE 611
Query: 680 AGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSA 739
AGY P+ + LHD+D+E K +L HSERLAV++ LL PIR+MKNLRVC DCH+A
Sbjct: 612 AGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTA 671
Query: 740 LKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
+KIISK+ RE+I+RDA RFHHF++G CSC+DYW
Sbjct: 672 IKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 79/183 (43%), Gaps = 31/183 (16%)
Query: 375 NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVH- 433
N + GL KEG+V EA E+ + ++ + T++ ++ G +++A+ +
Sbjct: 172 NIARTSMIHGLCKEGRVDEAREIFDEMSERSVI----TWTTMVTGYGQNNRVDDARKIFD 227
Query: 434 -----------------------EHVERL--LSPLR-VSTYNGILKMYSECDSMDDAFSV 467
E E L + P++ V N ++ + + A V
Sbjct: 228 VMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRV 287
Query: 468 FSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDV 527
F +M ER+ SW T+I +NG +A+D+F ++ G++P I + S C++L +
Sbjct: 288 FDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASL 347
Query: 528 VEG 530
G
Sbjct: 348 HHG 350
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 445 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504
+ ++NG++ Y + +D+A VF M ER++ SW ++ G+ NG + A +F + +
Sbjct: 79 IISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPE 138
Query: 505 AGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHY--VSIVDMLGSTGY 562
+ IG +G + K Y ++P + S++ L G
Sbjct: 139 KNKVSWTVMLIGFLQ---------DG--RIDDACKLYEMIPDKDNIARTSMIHGLCKEGR 187
Query: 563 LDEALEFIEKMPMEPDVDVWEKLMN 587
+DEA E ++M E V W ++
Sbjct: 188 VDEAREIFDEMS-ERSVITWTTMVT 211
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 16/181 (8%)
Query: 426 LEEAKAVHEHVERLLSPLR-VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMIT 484
++EA+ V + L P R V ++ ++K Y +D A S+F M E++ SW M+
Sbjct: 95 IDEARKVFD-----LMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLI 149
Query: 485 GFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIV 544
GF ++G +DA ++ D+ + G V E F+ MS+
Sbjct: 150 GFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDEAREIFDEMSER---- 201
Query: 545 PSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEI 604
S+ + ++V G +D+A + + MP + +V W ++ +G +E + E+
Sbjct: 202 -SVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVS-WTSMLMGYVQNGRIEDAEELFEV 259
Query: 605 V 605
+
Sbjct: 260 M 260
Score = 37.0 bits (84), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 445 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIF 499
+S++N ++ Y DA +F M +R++ SW+ +++G+ KNG ++A +F
Sbjct: 48 ISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVF 102
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 297 bits (760), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/406 (37%), Positives = 234/406 (57%), Gaps = 17/406 (4%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ G ++ G+ + A V + + D T + L +A ALE+ + +H + +L
Sbjct: 589 MISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN 648
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
++ MY++C S+DDA+ +F + ++T+W+ M+ G A++G G++ + +F
Sbjct: 649 CTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFK 708
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
Q K G+KPD FIGV SACS G V E H SM DYGI P ++HY + D LG
Sbjct: 709 QMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRA 768
Query: 561 GYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAG 620
G + +A IE M ME ++ L+ CR+ G+ E G R A + +L+P S A
Sbjct: 769 GLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPL----DSSAY 824
Query: 621 LVPVNASELAKEKENKKLASQNL-------------LEVRSKVHEYRAGDTSHPETDKIY 667
++ N A + + KLA + +EV++K+H + D S+ +T+ IY
Sbjct: 825 VLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIY 884
Query: 668 ALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIM 727
++ + +K+ GY+PET F L D+++E KE AL HSE+LAV+ GLLS+P PIR++
Sbjct: 885 RKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVI 944
Query: 728 KNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
KNLRVCGDCH+A+K I+K+ RE+++RDA RFH FKDG+CSC DYW
Sbjct: 945 KNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%)
Query: 406 ISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAF 465
+ D TF ++ +L + VH +L L ++ N ++ MY + A
Sbjct: 311 VECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFAR 370
Query: 466 SVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL 524
+VF NM+ERDL SW+++I G A+NGL +AV +F Q + GLKPD V A S+L
Sbjct: 371 TVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSL 429
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 4/202 (1%)
Query: 393 EAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGIL 452
+ +++ L+ KQ D T + + + CG A+ + K VH + + L + +GIL
Sbjct: 500 KTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGIL 559
Query: 453 KMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ 512
MY +C M A F ++ D +W TMI+G +NG E A +FSQ + G+ PD+
Sbjct: 560 DMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEF 619
Query: 513 IFIGVFSACSALGDVVEG-MLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIE 571
+ A S L + +G +H ++ + P + S+VDM G +D+A +
Sbjct: 620 TIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFK 677
Query: 572 KMPMEPDVDVWEKLMNLCRMHG 593
++ M ++ W ++ HG
Sbjct: 678 RIEM-MNITAWNAMLVGLAQHG 698
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 102/224 (45%), Gaps = 20/224 (8%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDA-KALEEAKAVHEHVERL- 439
+ G+ + G EA+ + L + + D T + +++A + L +K VH H ++
Sbjct: 388 IAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKIN 447
Query: 440 -LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDA 495
+S VST ++ YS M +A +F ER DL +W+ M+ G+ ++ G
Sbjct: 448 NVSDSFVST--ALIDAYSRNRCMKEAEILF----ERHNFDLVAWNAMMAGYTQSHDGHKT 501
Query: 496 VDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG-MLHFESMSKDYGIVPSMKHYVS-- 552
+ +F+ + G + DD VF C L + +G +H ++ Y + +VS
Sbjct: 502 LKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGY----DLDLWVSSG 557
Query: 553 IVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLE 596
I+DM G + A + +P+ DV W +++ C +G E
Sbjct: 558 ILDMYVKCGDMSAAQFAFDSIPVPDDV-AWTTMISGCIENGEEE 600
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 16/92 (17%)
Query: 398 LGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457
G L S DL ++ C A+ L E+ ER L N ++ MYS+
Sbjct: 43 FGFLRNAITSSDL-----MLGKCTHARIL----TFEENPERFL-------INNLISMYSK 86
Query: 458 CDSMDDAFSVFSNMTERDLTSWDTMITGFAKN 489
C S+ A VF M +RDL SW++++ +A++
Sbjct: 87 CGSLTYARRVFDKMPDRDLVSWNSILAAYAQS 118
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/121 (18%), Positives = 58/121 (47%)
Query: 391 VKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNG 450
+++A + +L + + T S +++ C + + +++ H + ++
Sbjct: 126 IQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGA 185
Query: 451 ILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD 510
++ +Y + + + +F M RD+ W+ M+ + + G E+A+D+ S F +GL P+
Sbjct: 186 LVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPN 245
Query: 511 D 511
+
Sbjct: 246 E 246
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 295 bits (755), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/401 (36%), Positives = 236/401 (58%), Gaps = 9/401 (2%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
+ G + G +EA+ V + ++ I + TF ++A + +++ K VH + +
Sbjct: 664 VSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGY 723
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
N ++ MY++C S+ DA F ++ ++ SW+ +I ++K+G G +A+D F Q
Sbjct: 724 DSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQ 783
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561
+ ++P+ +GV SACS +G V +G+ +FESM+ +YG+ P +HYV +VDML G
Sbjct: 784 MIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAG 843
Query: 562 YLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDP---------SR 612
L A EFI++MP++PD VW L++ C +H N+E+G+ A + +L+P S
Sbjct: 844 LLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSN 903
Query: 613 LNEKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRG 672
L SK + KEK KK Q+ +EV++ +H + GD +HP D+I+ +
Sbjct: 904 LYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQD 963
Query: 673 LRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRV 732
L + E GY+ + +L+++ E K+ + HSE+LA+S GLLS PA PI +MKNLRV
Sbjct: 964 LTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRV 1023
Query: 733 CGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
C DCH+ +K +SK+ RE+I+RDA RFHHF+ G CSC+DYW
Sbjct: 1024 CNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 116/263 (44%), Gaps = 33/263 (12%)
Query: 371 RSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAK 430
R ++ + + GL K EAI + + I FS ++ AC ++LE +
Sbjct: 249 RLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGE 308
Query: 431 AVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNG 490
+H V +L N ++ +Y ++ A +FSNM++RD +++T+I G ++ G
Sbjct: 309 QLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCG 368
Query: 491 LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM--------LHFESMSK--- 539
GE A+++F + GL+PD + ACSA G + G L F S +K
Sbjct: 369 YGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEG 428
Query: 540 ----------------DYGIVPSMKHYVSIVDMLGSTGYLDE---ALEFIEKMPME---P 577
DY + +++ V ML + G LD+ + +M +E P
Sbjct: 429 ALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP 488
Query: 578 DVDVWEKLMNLCRMHGNLELGDR 600
+ + ++ C G+LELG++
Sbjct: 489 NQYTYPSILKTCIRLGDLELGEQ 511
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 113/258 (43%), Gaps = 42/258 (16%)
Query: 378 TLEQLDGLVKEGKVKEAI-EVLGLLEKQCISVDLP---TFSQLMQAC-GDAKALEEAKAV 432
T+ + ++KE + I EV GL + P TFS +++AC G + A + + +
Sbjct: 150 TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQI 209
Query: 433 HEHVERLLSPLRVSTY--NGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNG 490
H + L LR ST N ++ +YS +D A VF + +D +SW MI+G +KN
Sbjct: 210 HARI--LYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNE 267
Query: 491 LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA-----LGDVVEGMLHFESMSKD----- 540
+A+ +F G+ P F V SAC +G+ + G++ S D
Sbjct: 268 CEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCN 327
Query: 541 --------YGIVPSMKH------------YVSIVDMLGSTGYLDEALEFIEKMP---MEP 577
G + S +H Y ++++ L GY ++A+E ++M +EP
Sbjct: 328 ALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEP 387
Query: 578 DVDVWEKLMNLCRMHGNL 595
D + L+ C G L
Sbjct: 388 DSNTLASLVVACSADGTL 405
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%)
Query: 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNM 471
T+ +++ C LE + +H + + L + ++ MY++ +D A+ +
Sbjct: 492 TYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 551
Query: 472 TERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG 530
+D+ SW TMI G+ + + A+ F Q G++ D+ SAC+ L + EG
Sbjct: 552 AGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEG 610
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 293 bits (750), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 155/402 (38%), Positives = 231/402 (57%), Gaps = 15/402 (3%)
Query: 384 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL 443
G + G+ +EA+++ +++ I D T Q + AC + +LEE H + + S L
Sbjct: 345 GYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHG--KAITSGL 402
Query: 444 --RVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
V+ N ++ +Y +C +DD+ +F+ M RD SW M++ +A+ G + + +F +
Sbjct: 403 IHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDK 462
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561
Q GLKPD GV SACS G V +G +F+ M+ +YGIVPS+ HY ++D+ +G
Sbjct: 463 MVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSG 522
Query: 562 YLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDP----------S 611
L+EA+ FI MP PD W L++ CR GNLE+G AE + +LDP S
Sbjct: 523 RLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSS 582
Query: 612 RLNEKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIR 671
K K V +EK KK Q+ ++ + K+H + A D S P D+IYA +
Sbjct: 583 IYASKGKWDSVA-QLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLE 641
Query: 672 GLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLR 731
L ++ + GY P+T FV HD+++ K + L HSERLA++ GL+ P+ PIR+ KNLR
Sbjct: 642 ELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLR 701
Query: 732 VCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
VC DCH+A K IS + GRE+++RDA RFH FKDG CSC D+W
Sbjct: 702 VCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 16/233 (6%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ GL + G KEAIE ++ Q + +D F ++ ACG A+ E K +H + R
Sbjct: 241 MIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTN 300
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
+ + ++ MY +C + A +VF M ++++ SW M+ G+ + G E+AV IF
Sbjct: 301 FQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFL 360
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYV----SIVDM 556
+++G+ PD SAC+ + + EG S I + HYV S+V +
Sbjct: 361 DMQRSGIDPDHYTLGQAISACANVSSLEEG-----SQFHGKAITSGLIHYVTVSNSLVTL 415
Query: 557 LGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609
G G +D++ +M + V W +++ G R E ++ D
Sbjct: 416 YGKCGDIDDSTRLFNEMNVRDAVS-WTAMVSAYAQFG------RAVETIQLFD 461
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 448 YNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL 507
YN ++ C ++DA +F M E+D SW MI G A+NGL ++A++ F + K GL
Sbjct: 208 YNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGL 266
Query: 508 KPDDQIFIGVFSACSALGDVVEG 530
K D F V AC LG + EG
Sbjct: 267 KMDQYPFGSVLPACGGLGAINEG 289
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 429 AKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAK 488
K +H ++ R L YN I+ Y+ S A VF + + +L SW+ ++ ++K
Sbjct: 25 VKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSK 84
Query: 489 NGLGEDAVDIFSQFKQAGLKPDDQ-----IFIGVFSACSALGDVVEGMLHFESMSKDYGI 543
GL + F + PD + I +S +G V+ + +M +D+
Sbjct: 85 AGLISEMESTFEKL------PDRDGVTWNVLIEGYSLSGLVGAAVKA---YNTMMRDFSA 135
Query: 544 VPSMKHYVSIVDMLGSTGYL 563
+ ++++ + S G++
Sbjct: 136 NLTRVTLMTMLKLSSSNGHV 155
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 293 bits (749), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 147/403 (36%), Positives = 239/403 (59%), Gaps = 12/403 (2%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
+ G V++G +++ + + D TF+ +++A +L K +H + R +
Sbjct: 424 ISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGN 483
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
V + +G++ MY++C S+ DA VF M +R+ SW+ +I+ A NG GE A+ F++
Sbjct: 484 LENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAK 543
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561
++GL+PD +GV +ACS G V +G +F++MS YGI P KHY ++D+LG G
Sbjct: 544 MIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNG 603
Query: 562 YLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGL 621
EA + +++MP EPD +W ++N CR+H N L +R AE + ++ R + + +
Sbjct: 604 RFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLR-DAAAYVSM 662
Query: 622 VPVNAS-----------ELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALI 670
+ A+ + +E+ KK+ + + +EV K+H + + D +HP D+I I
Sbjct: 663 SNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKI 722
Query: 671 RGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNL 730
L A+++ GY P+T V+ D+D++ K E+L HSERLAV+ L+S+P PI +MKNL
Sbjct: 723 NELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNL 782
Query: 731 RVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
R C DCH+A+K+ISKIV RE+ +RD RFHHF +G+CSC DYW
Sbjct: 783 RACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 405 CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL---LSPLRVSTYNGILKMYSECDSM 461
C D TF+ L+ C DA VH +L +P ++ N +LK Y E +
Sbjct: 142 CTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPF-LTVSNVLLKSYCEVRRL 200
Query: 462 DDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSAC 521
D A +F + E+D +++T+ITG+ K+GL +++ +F + +Q+G +P D F GV A
Sbjct: 201 DLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV 260
Query: 522 SALGDVVEG-MLHFESMSKDY 541
L D G LH S++ +
Sbjct: 261 VGLHDFALGQQLHALSVTTGF 281
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 89/189 (47%), Gaps = 6/189 (3%)
Query: 402 EKQCISVD---LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458
E QC+ D P F+ ++ + +L+ + +H + + N ++ MY++C
Sbjct: 341 EMQCMGFDRRNFP-FATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKC 399
Query: 459 DSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVF 518
+ ++A +F ++ +R SW +I+G+ + GL + +F++ + + L+ D F V
Sbjct: 400 EMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVL 459
Query: 519 SACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPD 578
A ++ ++ G + G + ++ +VDM G + +A++ E+MP
Sbjct: 460 KASASFASLLLGK-QLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNA 518
Query: 579 VDVWEKLMN 587
V W L++
Sbjct: 519 VS-WNALIS 526
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 292 bits (747), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 143/404 (35%), Positives = 247/404 (61%), Gaps = 14/404 (3%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
++G + GK +EA+ + + + I D T L+ AC AL K VH ++ ++
Sbjct: 194 INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGL 253
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
+ + N +L +Y+ C +++A ++F M +++ SW ++I G A NG G++A+++F
Sbjct: 254 TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKY 313
Query: 502 FKQA-GLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
+ GL P + F+G+ ACS G V EG +F M ++Y I P ++H+ +VD+L
Sbjct: 314 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARA 373
Query: 561 GYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAG 620
G + +A E+I+ MPM+P+V +W L+ C +HG+ +L + + QL+P+ +
Sbjct: 374 GQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPN--HSGDYVL 431
Query: 621 LVPVNASE-----LAKEKEN------KKLASQNLLEVRSKVHEYRAGDTSHPETDKIYAL 669
L + ASE + K ++ KK+ +L+EV ++VHE+ GD SHP++D IYA
Sbjct: 432 LSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAK 491
Query: 670 IRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKN 729
++ + +++ GY+P+ V D+++E KE A++ HSE++A++ L+S+P R+PI ++KN
Sbjct: 492 LKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKN 551
Query: 730 LRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
LRVC DCH A+K++SK+ RE+++RD RFHHFK+G CSC+DYW
Sbjct: 552 LRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 95/192 (49%), Gaps = 7/192 (3%)
Query: 395 IEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKM 454
+ V GL+E D T+ L++A + + +H V R + N +L +
Sbjct: 111 MRVSGLVEP-----DTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHL 165
Query: 455 YSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF 514
Y+ C + A+ VF M E+DL +W+++I GFA+NG E+A+ ++++ G+KPD
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTI 225
Query: 515 IGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMP 574
+ + SAC+ +G + G M K G+ ++ ++D+ G ++EA ++M
Sbjct: 226 VSLLSACAKIGALTLGKRVHVYMIK-VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMV 284
Query: 575 MEPDVDVWEKLM 586
+ V W L+
Sbjct: 285 DKNSVS-WTSLI 295
Score = 38.1 bits (87), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 19/179 (10%)
Query: 433 HEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDT--------MIT 484
H+ ++ P+ V +N +++ Y+E + AFS++ M L DT +T
Sbjct: 73 HKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVT 132
Query: 485 GFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIV 544
A LGE + + L + +++ C GDV F+ M +
Sbjct: 133 TMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANC---GDVASAYKVFDKMPEK---- 185
Query: 545 PSMKHYVSIVDMLGSTGYLDEALEFIEKM---PMEPDVDVWEKLMNLCRMHGNLELGDR 600
+ + S+++ G +EAL +M ++PD L++ C G L LG R
Sbjct: 186 -DLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKR 243
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 291 bits (746), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 153/406 (37%), Positives = 237/406 (58%), Gaps = 15/406 (3%)
Query: 381 QLDGLVKEGKVKEAIEVL-GLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL 439
+DG + G +A+ + LL + D T + AC ALE + +H V+
Sbjct: 229 MIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSS 288
Query: 440 LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIF 499
L V G++ MYS+C S+++A VF++ +D+ +W+ MI G+A +G +DA+ +F
Sbjct: 289 RIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLF 348
Query: 500 SQFK-QAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG 558
++ + GL+P D FIG AC+ G V EG+ FESM ++YGI P ++HY +V +LG
Sbjct: 349 NEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLG 408
Query: 559 STGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSK 618
G L A E I+ M M+ D +W ++ C++HG+ LG AE + L+ N
Sbjct: 409 RAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIK--NSGIY 466
Query: 619 AGLVPVNAS-----------ELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIY 667
L + AS L KEK K + +E+ +KVHE+RAGD H ++ +IY
Sbjct: 467 VLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIY 526
Query: 668 ALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIM 727
++R + ++K GY+P T VL D+++ KE++L HSERLA+++GL+S+ +P++I
Sbjct: 527 TMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIF 586
Query: 728 KNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
KNLRVC DCH+ K+ISKI GR++++RD RFHHF DG CSC D+W
Sbjct: 587 KNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 3/146 (2%)
Query: 449 NGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL- 507
++ Y++ +++ A ++F +M ERD+ SW+ MI G+A++G DA+ +F + G
Sbjct: 196 TAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKP 255
Query: 508 KPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEAL 567
KPD+ + SACS +G + G K I ++K ++DM G L+EA+
Sbjct: 256 KPDEITVVAALSACSQIGALETGRW-IHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAV 314
Query: 568 EFIEKMPMEPDVDVWEKLMNLCRMHG 593
P + D+ W ++ MHG
Sbjct: 315 LVFNDTPRK-DIVAWNAMIAGYAMHG 339
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 410 LPTFSQLMQACGDAKALEEAKAVHEHVER---LLSPLRVSTYNGIL-KMYSECDSMDDAF 465
LP +L +++++E +H + R LL P R N L + Y+ + +
Sbjct: 26 LPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHP-RYPVLNLKLHRAYASHGKIRHSL 84
Query: 466 SVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALG 525
++F + DL + I + NGL + A ++ Q + + P++ F + +CS
Sbjct: 85 ALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS 144
Query: 526 DVVEGMLHFESMSKDYGIVPSMKHYVS--IVDMLGSTGYLDEALEFIEKMP 574
++H + GI P YV+ +VD+ G + A + ++MP
Sbjct: 145 G---KLIHTHVLKFGLGIDP----YVATGLVDVYAKGGDVVSAQKVFDRMP 188
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 291 bits (744), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/404 (36%), Positives = 239/404 (59%), Gaps = 13/404 (3%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ G + G+ +EA+ V L++ + + V+ ++ AC AL++ + H ++ER
Sbjct: 211 MISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNK 270
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
+ V ++ +Y++C M+ A VF M E+++ +W + + G A NG GE +++FS
Sbjct: 271 IKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFS 330
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
KQ G+ P+ F+ V CS +G V EG HF+SM ++GI P ++HY +VD+
Sbjct: 331 LMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARA 390
Query: 561 GYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAG 620
G L++A+ I++MPM+P VW L++ RM+ NLELG ++ + +L+ + N +
Sbjct: 391 GRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETA--NHGAYVL 448
Query: 621 LVPV--------NASELAKEKENKKLASQ---NLLEVRSKVHEYRAGDTSHPETDKIYAL 669
L + N S + + ++K + Q +++EV +VHE+ GD SHP+ +I A+
Sbjct: 449 LSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAV 508
Query: 670 IRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKN 729
+ + +++ AGY +T V+ DID+E KE+AL HSE+ A++ G++S PIRI+KN
Sbjct: 509 WKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKN 568
Query: 730 LRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
LRVCGDCH +ISKI RE+I+RD RFHHFKDG CSC +W
Sbjct: 569 LRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 5/149 (3%)
Query: 456 SECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFI 515
+ C + A +F M ERD +W+ MI+G+A+ G +A+++F + G+K + I
Sbjct: 185 ARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMI 244
Query: 516 GVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPM 575
V SAC+ LG + +G + ++ I +++ ++VD+ G +++A+E M
Sbjct: 245 SVLSACTQLGALDQGRWAHSYIERN-KIKITVRLATTLVDLYAKCGDMEKAMEVFWGME- 302
Query: 576 EPDVDVWEKLMNLCRMHGNLELGDRCAEI 604
E +V W +N M+G G++C E+
Sbjct: 303 EKNVYTWSSALNGLAMNG---FGEKCLEL 328
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 290 bits (742), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 143/402 (35%), Positives = 240/402 (59%), Gaps = 10/402 (2%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ G K G +EAI++ + + + D + + + AC +LE+A++++E+V R
Sbjct: 294 MISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSD 353
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
V + ++ M+++C S++ A VF +RD+ W MI G+ +G +A+ ++
Sbjct: 354 YRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYR 413
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
++ G+ P+D F+G+ AC+ G V EG F M+ D+ I P +HY ++D+LG
Sbjct: 414 AMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRA 472
Query: 561 GYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS------RLN 614
G+LD+A E I+ MP++P V VW L++ C+ H ++ELG+ A+ + +DPS +L+
Sbjct: 473 GHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLS 532
Query: 615 EKSKAGLVPVNASEL---AKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIR 671
A + +E+ KEK K + +EVR ++ +R GD SHP ++I +
Sbjct: 533 NLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVE 592
Query: 672 GLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLR 731
+ +++KE G++ LHD++ E EE L +HSER+A+++GL+S+P P+RI KNLR
Sbjct: 593 WIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLR 652
Query: 732 VCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
C +CH+A K+ISK+V RE+++RD RFHHFKDG+CSC DYW
Sbjct: 653 ACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 86.7 bits (213), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 95/185 (51%), Gaps = 6/185 (3%)
Query: 406 ISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAF 465
+S D TF L++AC L+ + VH V RL V NG++ +Y++C + A
Sbjct: 115 VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSAR 174
Query: 466 SVFSNMT--ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA 523
+VF + ER + SW +++ +A+NG +A++IFSQ ++ +KPD + V +A +
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTC 234
Query: 524 LGDVVEGM-LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVW 582
L D+ +G +H + I P + +S+ M G + A +KM P++ +W
Sbjct: 235 LQDLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVATAKILFDKMK-SPNLILW 291
Query: 583 EKLMN 587
+++
Sbjct: 292 NAMIS 296
Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 97/209 (46%), Gaps = 10/209 (4%)
Query: 389 GKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTY 448
G+ EA+E+ + K + D ++ A + L++ +++H V ++ +
Sbjct: 201 GEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLL 260
Query: 449 NGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLK 508
+ MY++C + A +F M +L W+ MI+G+AKNG +A+D+F + ++
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVR 320
Query: 509 PDDQIFIGVFSACSALGDVVEGMLHFESMS----KDYGIVPSMKHYVSIVDMLGSTGYLD 564
PD SAC+ +G + + +E + +D + S +++DM G ++
Sbjct: 321 PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISS-----ALIDMFAKCGSVE 375
Query: 565 EALEFIEKMPMEPDVDVWEKLMNLCRMHG 593
A + ++ DV VW ++ +HG
Sbjct: 376 GA-RLVFDRTLDRDVVVWSAMIVGYGLHG 403
Score = 40.0 bits (92), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 425 ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDD---AFSVFSNMTERDLTSWDT 481
A +A+ H L+ L+ S + I K+ S D A VF ++ + W+
Sbjct: 31 ATHKAQLKQIHARLLVLGLQFSGFL-ITKLIHASSSFGDITFARQVFDDLPRPQIFPWNA 89
Query: 482 MITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG 530
+I G+++N +DA+ ++S + A + PD F + ACS L + G
Sbjct: 90 IIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 289 bits (739), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 157/404 (38%), Positives = 237/404 (58%), Gaps = 12/404 (2%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLP-TFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ G V+ GK EA V + ++ + + P S ++ AC + A + VH V L
Sbjct: 209 ISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALG 268
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
V N ++ MY++C + A +FS M RD+ SW ++I G A++G E A+ ++
Sbjct: 269 FDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYD 328
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
G+KP++ F+G+ ACS +G V +G F+SM+KDYGI PS++HY ++D+LG +
Sbjct: 329 DMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRS 388
Query: 561 GYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAE-IVEQL---DPSR---L 613
G LDEA I MP PD W L++ C+ G ++G R A+ +V DPS L
Sbjct: 389 GLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILL 448
Query: 614 NEKSKAGLVPVNASELAK---EKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALI 670
+ + + SE + E E +K + +EVR + + AG+TSHP + I+ L+
Sbjct: 449 SNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLL 508
Query: 671 RGLRAQMK-EAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKN 729
+ L +M+ GY+P+T ++LHD+D++ KE+ L HSER AV++GLL + PIRI+KN
Sbjct: 509 KKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKN 568
Query: 730 LRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
LRVCGDCH LK IS+I RE+I+RDA R+HHFK G CSC D+W
Sbjct: 569 LRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 10/162 (6%)
Query: 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFS 469
+P + +Q C + L AKA+H H+ +L N ++ +Y +C + A VF
Sbjct: 3 IPHYLHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFD 62
Query: 470 NMTERDLTSWDTMITGFAKNGL-GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVV 528
M RD +W +++T + L G+ S +GL+PDD +F + AC+ LG +
Sbjct: 63 EMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSID 122
Query: 529 EG-MLHFESMSKDYG---IVPSMKHYVSIVDMLGSTGYLDEA 566
G +H + +Y +V S S+VDM G L+ A
Sbjct: 123 HGRQVHCHFIVSEYANDEVVKS-----SLVDMYAKCGLLNSA 159
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 54/95 (56%), Gaps = 14/95 (14%)
Query: 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTY-------NGILKMYSECDSMDDA 464
FS L++AC + +++ + VH H VS Y + ++ MY++C ++ A
Sbjct: 107 VFSALVKACANLGSIDHGRQVHCH-------FIVSEYANDEVVKSSLVDMYAKCGLLNSA 159
Query: 465 FSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIF 499
+VF ++ ++ SW M++G+AK+G E+A+++F
Sbjct: 160 KAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELF 194
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 289 bits (739), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 152/395 (38%), Positives = 226/395 (57%), Gaps = 14/395 (3%)
Query: 393 EAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGIL 452
EA+E+ +E D + + ++ ACGD AL K +H ++ER + N ++
Sbjct: 292 EAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI 351
Query: 453 KMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ 512
MY++C ++ A VF NM RD+ SW MI+ + +G G DAV +FS+ + +GL PD
Sbjct: 352 DMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSI 411
Query: 513 IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEK 572
F+ +ACS G + EG F+ M+ Y I P ++H +VD+LG G + EA FI+
Sbjct: 412 AFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQD 471
Query: 573 MPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR-------LNEKSKAGLV--P 623
M MEP+ VW L+ CR+H + ++G A+ + QL P + N +KAG
Sbjct: 472 MSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEV 531
Query: 624 VNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYI 683
N + K K KK + +EV +H + GD SHP++D+IY + L +MKE GY+
Sbjct: 532 TNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYV 591
Query: 684 PETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSP-----ARAPIRIMKNLRVCGDCHS 738
P++ LHD+++E KE L HSE+LA+ L+++ + IRI KNLR+CGDCH
Sbjct: 592 PDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHV 651
Query: 739 ALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
A K+IS+I RE+IIRD RFH F+ G+CSC DYW
Sbjct: 652 AAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 104/237 (43%), Gaps = 8/237 (3%)
Query: 386 VKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRV 445
V G E ++V G + + D TF +++AC + + + +H ++ +
Sbjct: 116 VNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTL 175
Query: 446 STYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505
NG++ MY +C + +A V M+ RD+ SW++++ G+A+N +DA+++ + +
Sbjct: 176 FVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESV 235
Query: 506 GLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDE 565
+ D + A S E +++ + M G S+ + ++ + E
Sbjct: 236 KISHDAGTMASLLPAVS--NTTTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVE 292
Query: 566 ALEFIEKMP---MEPDVDVWEKLMNLCRMHGNLELGDRCAEIVE--QLDPSRLNEKS 617
A+E +M EPD ++ C L LG + +E +L P+ L E +
Sbjct: 293 AVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENA 349
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Query: 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGI--LKMYSECDSMDDAFSVFSN 470
Q++ D + L + VH + +L LR ++ G+ ++ Y+ + A VF
Sbjct: 45 LGQVLDTYPDIRTL---RTVHSRI--ILEDLRCNSSLGVKLMRAYASLKDVASARKVFDE 99
Query: 471 MTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG 530
+ ER++ + MI + NG + V +F ++PD F V ACS G +V G
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIG 159
Query: 531 MLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLM 586
S +K G+ ++ +V M G G+L EA +++M DV W L+
Sbjct: 160 RKIHGSATK-VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMS-RRDVVSWNSLV 213
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 288 bits (737), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 235/398 (59%), Gaps = 15/398 (3%)
Query: 389 GKVKEAIEVLGLLEKQC-ISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVST 447
GK EA+ V L+ Q + ++ T + AC ALE + +H ++++ +
Sbjct: 343 GKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHV 402
Query: 448 YNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL 507
+ ++ MYS+C ++ + VF+++ +RD+ W MI G A +G G +AVD+F + ++A +
Sbjct: 403 TSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANV 462
Query: 508 KPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEAL 567
KP+ F VF ACS G V E F M +YGIVP KHY IVD+LG +GYL++A+
Sbjct: 463 KPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAV 522
Query: 568 EFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPV--- 624
+FIE MP+ P VW L+ C++H NL L + + +L+P N+ + L +
Sbjct: 523 KFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPR--NDGAHVLLSNIYAK 580
Query: 625 -----NASELAKEKENKKLASQ---NLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQ 676
N SEL K L + + +E+ +HE+ +GD +HP ++K+Y + + +
Sbjct: 581 LGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEK 640
Query: 677 MKEAGYIPETRFVLHDI-DQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGD 735
+K GY PE VL I ++E KE++L HSE+LA+ +GL+S+ A IR++KNLRVCGD
Sbjct: 641 LKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGD 700
Query: 736 CHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
CHS K+IS++ RE+I+RD RFHHF++G CSC D+W
Sbjct: 701 CHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 109/245 (44%), Gaps = 34/245 (13%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
++G V++G +A+E+ +E + + T ++ AC + LE + V ++E
Sbjct: 203 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENR 262
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFA------------- 487
+ ++ N +L MY++C S++DA +F M E+D +W TM+ G+A
Sbjct: 263 VNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLN 322
Query: 488 ------------------KNGLGEDAVDIFSQFK-QAGLKPDDQIFIGVFSACSALGDVV 528
+NG +A+ +F + + Q +K + + SAC+ +G +
Sbjct: 323 SMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALE 382
Query: 529 EGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNL 588
G S K +GI + +++ M G L+++ E + + DV VW ++
Sbjct: 383 LGRW-IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGG 440
Query: 589 CRMHG 593
MHG
Sbjct: 441 LAMHG 445
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 86/176 (48%), Gaps = 2/176 (1%)
Query: 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNM 471
TF L++A + +L +++H + V N ++ Y C +D A VF+ +
Sbjct: 133 TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 192
Query: 472 TERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM 531
E+D+ SW++MI GF + G + A+++F + + +K +GV SAC+ + ++ G
Sbjct: 193 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252
Query: 532 LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMN 587
S ++ + ++ +++DM G +++A + M E D W +++
Sbjct: 253 -QVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLD 306
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 286 bits (732), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 150/407 (36%), Positives = 232/407 (57%), Gaps = 16/407 (3%)
Query: 381 QLDGLVKEGKVKEAIEVLG-LLEKQC-ISVDLPTFSQLMQACGDAKALEEAKAVHEHVER 438
+ G + G +A+E+L + E+ C + T S + AC AL K +H + R
Sbjct: 446 MIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALR 505
Query: 439 L---LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDA 495
PL VS N ++ MY++C S+ DA VF NM ++ +W +++TG+ +G GE+A
Sbjct: 506 NQQNAVPLFVS--NCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEA 563
Query: 496 VDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVD 555
+ IF + ++ G K D + V ACS G + +GM +F M +G+ P +HY +VD
Sbjct: 564 LGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVD 623
Query: 556 MLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615
+LG G L+ AL IE+MPMEP VW ++ CR+HG +ELG+ AE + +L +
Sbjct: 624 LLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGS 683
Query: 616 KSKAGLVPVNASE---------LAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKI 666
+ + NA L + K KK + +E + GD +HP +I
Sbjct: 684 YTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEI 743
Query: 667 YALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRI 726
Y ++ ++K+ GY+PET F LHD+D E K++ L HSE+LA+++G+L++P A IRI
Sbjct: 744 YQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRI 803
Query: 727 MKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
KNLRVCGDCH+A +S+I+ ++I+RD+ RFHHFK+G CSC+ YW
Sbjct: 804 TKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 103/202 (50%), Gaps = 9/202 (4%)
Query: 389 GKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVH--EHVERLLSPLRVS 446
G + + + GL+ + D TF + +ACG+ ++ ++ H V +S + V
Sbjct: 106 GCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVG 165
Query: 447 TYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK-QA 505
N ++ MYS C S+ DA VF M+ D+ SW+++I +AK G + A+++FS+ +
Sbjct: 166 --NALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEF 223
Query: 506 GLKPDDQIFIGVFSACSALGDVVEG-MLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564
G +PD+ + V C++LG G LH +++ + ++ +M +VDM G +D
Sbjct: 224 GCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSE--MIQNMFVGNCLVDMYAKCGMMD 281
Query: 565 EALEFIEKMPMEPDVDVWEKLM 586
EA M ++ DV W ++
Sbjct: 282 EANTVFSNMSVK-DVVSWNAMV 302
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 52/193 (26%)
Query: 449 NGILKMYSECDSMDDAFSVFSNMTERDLTSWDTM-------------------------- 482
N ++ MY++C MD+A +VFSNM+ +D+ SW+ M
Sbjct: 268 NCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIK 327
Query: 483 ---------ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM-L 532
I+G+A+ GLG +A+ + Q +G+KP++ I V S C+++G ++ G +
Sbjct: 328 MDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEI 387
Query: 533 HFESMSK----------DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDV 581
H ++ D +V + ++DM +D A + + P E DV
Sbjct: 388 HCYAIKYPIDLRKNGHGDENMVIN-----QLIDMYAKCKKVDTARAMFDSLSPKERDVVT 442
Query: 582 WEKLMNLCRMHGN 594
W ++ HG+
Sbjct: 443 WTVMIGGYSQHGD 455
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 18/226 (7%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
+ G + G EA+ V + I + T ++ C AL K +H + +
Sbjct: 337 ISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPI 396
Query: 442 PLRVS-------TYNGILKMYSECDSMDDAFSVFSNMT--ERDLTSWDTMITGFAKNGLG 492
LR + N ++ MY++C +D A ++F +++ ERD+ +W MI G++++G
Sbjct: 397 DLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDA 456
Query: 493 EDAVDIFSQF--KQAGLKPDDQIFIGVFSACSALGDVVEG-MLHFESMSKDYGIVPSMKH 549
A+++ S+ + +P+ AC++L + G +H ++ VP
Sbjct: 457 NKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPL--- 513
Query: 550 YVS--IVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHG 593
+VS ++DM G + +A + M + +V W LM MHG
Sbjct: 514 FVSNCLIDMYAKCGSISDARLVFDNMMAKNEV-TWTSLMTGYGMHG 558
Score = 37.4 bits (85), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 9/168 (5%)
Query: 423 AKALEEAKAVHEHVERLLS--PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERD--LTS 478
K + + K +H+ +LLS L ++ + ++ Y + A S+ D +
Sbjct: 38 CKTISQVKLIHQ---KLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYH 94
Query: 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMS 538
W+++I + NG + +F PD+ F VF AC + V G ++S
Sbjct: 95 WNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGE-SAHALS 153
Query: 539 KDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLM 586
G + ++ ++V M L +A + ++M + DV W ++
Sbjct: 154 LVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVW-DVVSWNSII 200
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 285 bits (730), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 156/410 (38%), Positives = 238/410 (58%), Gaps = 23/410 (5%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKA-LEEAKAVHEHV--E 437
L G + G+ + AI++ G L K I + TFS ++ C A + + K H
Sbjct: 465 MLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKS 524
Query: 438 RLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVD 497
RL S L VS+ +L MY++ +++ A VF E+DL SW++MI+G+A++G A+D
Sbjct: 525 RLDSSLCVSS--ALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALD 582
Query: 498 IFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDML 557
+F + K+ +K D FIGVF+AC+ G V EG +F+ M +D I P+ +H +VD+
Sbjct: 583 VFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLY 642
Query: 558 GSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKS 617
G L++A++ IE MP +W ++ CR+H ELG AE + + P E S
Sbjct: 643 SRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKP----EDS 698
Query: 618 KAGLVPVN-------------ASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETD 664
A ++ N +L E+ KK + +EV++K + + AGD SHP D
Sbjct: 699 AAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKD 758
Query: 665 KIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPI 724
+IY + L ++K+ GY P+T +VL DID E KE L HSERLA++ GL+++P +P+
Sbjct: 759 QIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPL 818
Query: 725 RIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHF-KDGLCSCRDYW 773
I+KNLRVCGDCH +K+I+KI RE+++RD+ RFHHF DG+CSC D+W
Sbjct: 819 LIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 88/176 (50%), Gaps = 7/176 (3%)
Query: 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNM 471
+F+ +++ C + K L + +H V + + ++ YS+C +M DA +F +
Sbjct: 297 SFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEI 356
Query: 472 -TERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG 530
++ SW MI+GF +N E+AVD+FS+ K+ G++P++ + + +AL +
Sbjct: 357 GCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVIL---TALPVISPS 413
Query: 531 MLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLM 586
+H + + +Y ++ +++D G ++EA + + + D+ W ++
Sbjct: 414 EVHAQVVKTNYERSSTVG--TALLDAYVKLGKVEEAAKVFSGID-DKDIVAWSAML 466
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 98/213 (46%), Gaps = 5/213 (2%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ G ++ +EA+++ ++++ + + T+S ++ A E VH V +
Sbjct: 368 MISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE----VHAQVVKTN 423
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
+ +L Y + +++A VFS + ++D+ +W M+ G+A+ G E A+ +F
Sbjct: 424 YERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFG 483
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
+ + G+KP++ F + + C+A + F + + S+ +++ M
Sbjct: 484 ELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKK 543
Query: 561 GYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHG 593
G ++ A E + K E D+ W +++ HG
Sbjct: 544 GNIESAEE-VFKRQREKDLVSWNSMISGYAQHG 575
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVER 438
+ L G ++G+ +EA + + + + +D FS +++ + +H +
Sbjct: 62 ISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIK 121
Query: 439 LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDI 498
VS ++ Y + + D VF M ER++ +W T+I+G+A+N + ++ + +
Sbjct: 122 FGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTL 181
Query: 499 FSQFKQAGLKPDDQIFIGVFSACSALGDVVE 529
F + + G +P+ F+ +ALG + E
Sbjct: 182 FMRMQNEGTQPNS------FTFAAALGVLAE 206
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 44/83 (53%)
Query: 445 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504
+ N ++ +Y +C ++ A +F + + +W++MI+G+A NGL +A+ +F +
Sbjct: 229 IPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRL 288
Query: 505 AGLKPDDQIFIGVFSACSALGDV 527
++ + F V C+ L ++
Sbjct: 289 NYVRLSESSFASVIKLCANLKEL 311
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 285 bits (728), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 231/385 (60%), Gaps = 13/385 (3%)
Query: 400 LLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVER--LLSPLRVSTYNGILKMYSE 457
LLE++ S D T + ++ AC A ++ + +H ++ R S V+ N ++ MY++
Sbjct: 489 LLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA--NSLVDMYAK 546
Query: 458 CDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGV 517
C ++ A +F ++ +DL SW MI G+ +G G++A+ +F+Q +QAG++ D+ F+ +
Sbjct: 547 CGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSL 606
Query: 518 FSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEP 577
ACS G V EG F M + I P+++HY IVDML TG L +A FIE MP+ P
Sbjct: 607 LYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPP 666
Query: 578 DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPVNASELAKEKENKK 637
D +W L+ CR+H +++L ++ AE V +L+P + A + + K +K
Sbjct: 667 DATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRK 726
Query: 638 LASQ---------NLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRF 688
Q + +E++ +V+ + AGD+S+PET+ I A +R +RA+M E GY P T++
Sbjct: 727 RIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKY 786
Query: 689 VLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVG 748
L D ++ KEEAL HSE+LA++ G++SS IR+ KNLRVCGDCH K +SK+
Sbjct: 787 ALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTR 846
Query: 749 RELIIRDAKRFHHFKDGLCSCRDYW 773
RE+++RD+ RFH FKDG CSCR +W
Sbjct: 847 REIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 109/216 (50%), Gaps = 7/216 (3%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ G +EG EA+++ +E++ IS D+ T + ++ C + L+E K VHE ++
Sbjct: 368 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEND 427
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
+ N ++ MY++C SM +A VFS M +D+ SW+T+I G++KN +A+ +F+
Sbjct: 428 LGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFN 487
Query: 501 -QFKQAGLKPDDQIFIGVFSACSALGDVVEGM-LHFESMSKDYGIVPSMKHYV-SIVDML 557
++ PD++ V AC++L +G +H M Y S +H S+VDM
Sbjct: 488 LLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY---FSDRHVANSLVDMY 544
Query: 558 GSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHG 593
G L A + + D+ W ++ MHG
Sbjct: 545 AKCGALLLAHMLFDDIA-SKDLVSWTVMIAGYGMHG 579
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 4/206 (1%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
++G V G ++ + V + I +DL T + C D++ + +AVH +
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACF 327
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
N +L MYS+C +D A +VF M++R + S+ +MI G+A+ GL +AV +F +
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEE 387
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEG-MLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
++ G+ PD V + C+ + EG +H D G + + +++DM
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKC 445
Query: 561 GYLDEALEFIEKMPMEPDVDVWEKLM 586
G + EA +M ++ D+ W ++
Sbjct: 446 GSMQEAELVFSEMRVK-DIISWNTII 470
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 110/266 (41%), Gaps = 43/266 (16%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
++ L K G +I + + + +D TFS + ++ +++ + +H + +
Sbjct: 167 MNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGF 226
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
R S N ++ Y + +D A VF MTERD+ SW+++I G+ NGL E + +F Q
Sbjct: 227 GERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQ 286
Query: 502 FKQAGLKPDDQIFIGVFSAC-----------------------------------SALGD 526
+G++ D + VF+ C S GD
Sbjct: 287 MLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGD 346
Query: 527 VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPME---PDVDVWE 583
+ F MS D +V Y S++ G EA++ E+M E PDV
Sbjct: 347 LDSAKAVFREMS-DRSVVS----YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVT 401
Query: 584 KLMNLCRMHGNLELGDRCAEIVEQLD 609
++N C + L+ G R E +++ D
Sbjct: 402 AVLNCCARYRLLDEGKRVHEWIKEND 427
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 364 DDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCIS----VDLPTFSQLMQA 419
D RS + T QL + G ++ A+++L C+S +D T ++Q
Sbjct: 52 DSITTFDRSVTDANT--QLRRFCESGNLENAVKLL------CVSGKWDIDPRTLCSVLQL 103
Query: 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSW 479
C D+K+L++ K V + + + + + MY+ C + +A VF + W
Sbjct: 104 CADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFW 163
Query: 480 DTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG-MLHFESMS 538
+ ++ AK+G ++ +F + +G++ D F V + S+L V G LH +
Sbjct: 164 NILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILK 223
Query: 539 KDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMN 587
+G S+ + S+V +D A + ++M E DV W ++N
Sbjct: 224 SGFGERNSVGN--SLVAFYLKNQRVDSARKVFDEMT-ERDVISWNSIIN 269
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 285 bits (728), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 147/407 (36%), Positives = 234/407 (57%), Gaps = 19/407 (4%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ G V+ + ++ +++ + ++ I + S + C + AL+ + +H+ V +
Sbjct: 255 MISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKST 314
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
V+ ++ MY +C + DA+ +F M ++D+ +W+ MI+G+A++G + A+ +F
Sbjct: 315 LCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFR 374
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
+ ++PD F+ V AC+ G V GM +FESM +DY + P HY +VD+LG
Sbjct: 375 EMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRA 434
Query: 561 GYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAG 620
G L+EAL+ I MP P V+ L+ CR+H N+EL + AE + QL N ++ AG
Sbjct: 435 GKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQL-----NSQNAAG 489
Query: 621 LVPV--------------NASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKI 666
V + + KE K+ + +E+R+KVH +R+ D HPE D I
Sbjct: 490 YVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSI 549
Query: 667 YALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRI 726
+ ++ L +MK AGY PE F LH++++E KE+ LL HSE+LAV+ G + P + I++
Sbjct: 550 HKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQV 609
Query: 727 MKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
KNLR+CGDCH A+K IS+I RE+I+RD RFHHFKDG CSC DYW
Sbjct: 610 FKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 105/217 (48%), Gaps = 15/217 (6%)
Query: 381 QLDGLVKEGKVKEAIEVL-GLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL 439
+ G + G++++A E+ ++EK +S + S ++ CGD LE+A +
Sbjct: 161 MITGYARRGEMEKARELFYSMMEKNEVSWN-AMISGYIE-CGD---LEKASHFFK----- 210
Query: 440 LSPLR-VSTYNGILKMYSECDSMDDAFSVFSNMT-ERDLTSWDTMITGFAKNGLGEDAVD 497
++P+R V + ++ Y + ++ A ++F +MT ++L +W+ MI+G+ +N ED +
Sbjct: 211 VAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLK 270
Query: 498 IFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDML 557
+F + G++P+ CS L + G + +SK + + S++ M
Sbjct: 271 LFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKS-TLCNDVTALTSLISMY 329
Query: 558 GSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGN 594
G L +A + E M + DV W +++ HGN
Sbjct: 330 CKCGELGDAWKLFEVMK-KKDVVAWNAMISGYAQHGN 365
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 386 VKEGKVKEAIEVL-GLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR 444
V+ G + A+ V G+ K I+ + S L+ D + EA H+ + + P
Sbjct: 72 VRSGDIDGALRVFHGMRAKNTITWN----SLLIGISKDPSRMMEA---HQLFDEIPEPDT 124
Query: 445 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIF 499
S YN +L Y + + A S F M +D SW+TMITG+A+ G E A ++F
Sbjct: 125 FS-YNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELF 178
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 284 bits (727), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 150/403 (37%), Positives = 231/403 (57%), Gaps = 13/403 (3%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
+ G V+ G+ EA+ + + + FS ++ AC L K +H +V R
Sbjct: 315 VAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGF 374
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
+ + ++ MYS+C ++ A +F M D SW +I G A +G G +AV +F +
Sbjct: 375 GSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEE 434
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561
K+ G+KP+ F+ V +ACS +G V E +F SM+K YG+ ++HY ++ D+LG G
Sbjct: 435 MKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAG 494
Query: 562 YLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGL 621
L+EA FI KM +EP VW L++ C +H NLEL ++ AE + +D N + +
Sbjct: 495 KLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSE--NMGAYVLM 552
Query: 622 VPVNAS-----ELAK------EKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALI 670
+ AS E+AK +K +K + + +E+++K H + +GD SHP DKI +
Sbjct: 553 CNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFL 612
Query: 671 RGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNL 730
+ + QM++ GY+ +T VLHD+D+E K E L HSERLAV+ G++++ IR+ KN+
Sbjct: 613 KAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNI 672
Query: 731 RVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
R+C DCH A+K ISKI RE+I+RD RFHHF G CSC DYW
Sbjct: 673 RICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 11/190 (5%)
Query: 406 ISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAF 465
+S LP FS+ + + K +H +V R V + ++ MY++ ++D+
Sbjct: 245 LSSVLPIFSEYVDVI-------KGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSE 297
Query: 466 SVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALG 525
VFS + RD SW++++ G+ +NG +A+ +F Q A +KP F V AC+ L
Sbjct: 298 RVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLA 357
Query: 526 DVVEG-MLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEK 584
+ G LH + +G ++ ++VDM G + A + ++M + +V W
Sbjct: 358 TLHLGKQLHGYVLRGGFG--SNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTA 414
Query: 585 LMNLCRMHGN 594
++ +HG+
Sbjct: 415 IIMGHALHGH 424
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 39/192 (20%)
Query: 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSM---------- 461
F ++++C L ++VH + RL + T N ++ MY++ M
Sbjct: 107 VFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVF 166
Query: 462 --------------------------DDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDA 495
D VF M +D+ S++T+I G+A++G+ EDA
Sbjct: 167 DEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDA 226
Query: 496 VDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM-LHFESMSKDYGIVPSMKHYVSIV 554
+ + + LKPD V S DV++G +H + K GI + S+V
Sbjct: 227 LRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRK--GIDSDVYIGSSLV 284
Query: 555 DMLGSTGYLDEA 566
DM + ++++
Sbjct: 285 DMYAKSARIEDS 296
Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 424 KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMI 483
K+ +AK +H R S L ++ + ++ +Y+ + +A +F + + +W ++I
Sbjct: 19 KSKSQAKQLHAQFIRTQS-LSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVI 77
Query: 484 TGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDV 527
F L A+ F + + +G PD +F V +C+ + D+
Sbjct: 78 RCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 282 bits (722), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 156/432 (36%), Positives = 246/432 (56%), Gaps = 21/432 (4%)
Query: 357 LNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQL 416
L +CK + R + G G K+A+EV ++K I + T +
Sbjct: 221 LGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSV 280
Query: 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNG--ILKMYSECDSMDDAFSVFSNMTER 474
+ A +LE + +H + E S +R+ G ++ MYS+C ++ A VF +
Sbjct: 281 LPAISRLGSLELGEWLHLYAED--SGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRE 338
Query: 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHF 534
++ +W MI GFA +G DA+D F + +QAG++P D +I + +ACS G V EG +F
Sbjct: 339 NVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYF 398
Query: 535 ESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGN 594
M G+ P ++HY +VD+LG +G LDEA EFI MP++PD +W+ L+ CRM GN
Sbjct: 399 SQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGN 458
Query: 595 LELGDRCAEIVEQLDP-------SRLNEKSKAGLVPVNASELA------KEKENKKLASQ 641
+E+G R A I+ + P + N + G N SE++ KEK+ +K
Sbjct: 459 VEMGKRVANILMDMVPHDSGAYVALSNMYASQG----NWSEVSEMRLRMKEKDIRKDPGC 514
Query: 642 NLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEA 701
+L+++ +HE+ D SHP+ +I +++ + +++ AGY P T VL ++++E KE
Sbjct: 515 SLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENV 574
Query: 702 LLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHH 761
L HSE++A + GL+S+ PIRI+KNLR+C DCHS++K+ISK+ R++ +RD KRFHH
Sbjct: 575 LHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHH 634
Query: 762 FKDGLCSCRDYW 773
F+DG CSC DYW
Sbjct: 635 FQDGSCSCMDYW 646
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 18/241 (7%)
Query: 364 DDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQA---C 420
D+F E +R + + L K GK++E ++ GL K D S L++ C
Sbjct: 121 DEFVEPNRFTFPS----VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMC 176
Query: 421 G---DAKALEEAKAVHEHVERLLSPLR----VSTYNGILKMYSECDSMDDAFSVFSNMTE 473
G DA+ L + + + + + + +N ++ Y A +F M +
Sbjct: 177 GFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQ 236
Query: 474 RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG-ML 532
R + SW+TMI+G++ NG +DAV++F + K+ ++P+ + V A S LG + G L
Sbjct: 237 RSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWL 296
Query: 533 HFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMH 592
H ++D GI +++DM G +++A+ E++P E +V W ++N +H
Sbjct: 297 HL--YAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRE-NVITWSAMINGFAIH 353
Query: 593 G 593
G
Sbjct: 354 G 354
Score = 41.2 bits (95), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 461 MDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDI---FSQFKQAGLKPDDQIFIGV 517
+D A +F+ M +R+ SW+T+I GF+++ + + I + ++P+ F V
Sbjct: 75 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134
Query: 518 FSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEP 577
AC+ G + EG ++ YG ++V M G++ +A K +E
Sbjct: 135 LKACAKTGKIQEGK-QIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193
Query: 578 DVDV 581
D+ V
Sbjct: 194 DMVV 197
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 279 bits (713), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 142/398 (35%), Positives = 226/398 (56%), Gaps = 12/398 (3%)
Query: 387 KEGKVKEAIEVLG-LLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRV 445
+ G EA EV L++ + ++ + T S ++ A + AL K +H+ V R+ V
Sbjct: 263 QSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDV 322
Query: 446 STYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505
I+ MY +C ++ A F M +++ SW MI G+ +G A+++F +
Sbjct: 323 IVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDS 382
Query: 506 GLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDE 565
G++P+ F+ V +ACS G VEG F +M +G+ P ++HY +VD+LG G+L +
Sbjct: 383 GVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQK 442
Query: 566 ALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPVN 625
A + I++M M+PD +W L+ CR+H N+EL + + +LD S + +
Sbjct: 443 AYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYAD 502
Query: 626 ASELAKEKENKKLASQN----------LLEVRSKVHEYRAGDTSHPETDKIYALIRGLRA 675
A K+ E ++ +N LLE+ +VH + GD HP+ +KIY + L
Sbjct: 503 AGRW-KDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNR 561
Query: 676 QMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGD 735
++ EAGY+ T V HD+D+E KE L HSE+LA++ G++++ + + ++KNLRVC D
Sbjct: 562 KLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSD 621
Query: 736 CHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
CH+ +K+ISKIV RE ++RDAKRFHHFKDG CSC DYW
Sbjct: 622 CHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 6/144 (4%)
Query: 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR 444
L + G EA+ + K + +F ++AC + K H+
Sbjct: 51 LARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSD 110
Query: 445 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504
+ + ++ MYS C ++DA VF + +R++ SW +MI G+ NG DAV +F
Sbjct: 111 IFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLV 170
Query: 505 AGLKPDDQIF------IGVFSACS 522
DD +F + V SACS
Sbjct: 171 DENDDDDAMFLDSMGLVSVISACS 194
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 279 bits (713), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 152/401 (37%), Positives = 227/401 (56%), Gaps = 21/401 (5%)
Query: 392 KEAIEVLGLLEKQ------CISVDLPTFSQLMQACGDAKALEEAKAVHEHVER--LLSPL 443
K +VL L +K C+ D T +QAC + AL+ K VH+ ++ L L
Sbjct: 193 KRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGAL 252
Query: 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK 503
+S N ++ MYS C SMD A+ VF M ER++ SW +I+G A NG G++A++ F++
Sbjct: 253 NLS--NTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEML 310
Query: 504 QAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM-SKDYGIVPSMKHYVSIVDMLGSTGY 562
+ G+ P++Q G+ SACS G V EGM+ F+ M S ++ I P++ HY +VD+LG
Sbjct: 311 KFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARL 370
Query: 563 LDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR-------LNE 615
LD+A I+ M M+PD +W L+ CR+HG++ELG+R + +L LN
Sbjct: 371 LDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNT 430
Query: 616 KSKAGLV--PVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGL 673
S G L KEK + +E++ VHE+ D SHP ++IY ++ +
Sbjct: 431 YSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEI 490
Query: 674 RAQMKEAGYIPETRFVLHDID-QEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRV 732
Q+K AGY+ E LH+++ +E K AL HSE+LA++ G+L +P IR+ KNLR
Sbjct: 491 NQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRT 550
Query: 733 CGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
C DCH+ K +S + R +I+RD RFHHFK G CSC D+W
Sbjct: 551 CVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 451 ILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK---QAGL 507
++ +YS C++ DA VF + +RD SW+ + + + +N D + +F + K +
Sbjct: 154 LMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCV 213
Query: 508 KPDDQIFIGVFSACSALGDVVEGMLHFESMSKDY----GIVPSMKHYVSIVDMLGSTGYL 563
KPD + AC+ L G L F D+ G+ ++ ++V M G +
Sbjct: 214 KPDGVTCLLALQACANL-----GALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSM 268
Query: 564 DEALEFIEKMPMEPDVDVWEKLMNLCRMHG 593
D+A + M E +V W L++ M+G
Sbjct: 269 DKAYQVFYGMR-ERNVVSWTALISGLAMNG 297
Score = 33.9 bits (76), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 8/129 (6%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHV---ER 438
+ GL G KEAIE + K IS + T + L+ AC + + E + + E
Sbjct: 290 ISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEF 349
Query: 439 LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER-DLTSWDTMITGFAKNG---LGED 494
+ P + Y ++ + +D A+S+ +M + D T W T++ +G LGE
Sbjct: 350 KIKP-NLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGER 408
Query: 495 AVDIFSQFK 503
+ + K
Sbjct: 409 VISHLIELK 417
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 139/401 (34%), Positives = 235/401 (58%), Gaps = 9/401 (2%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
+ G + GK EA+E+ ++ + + T ++ ACG+ AL ++ H R+
Sbjct: 360 IAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHL 419
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
V + ++ MY++C ++ + VF+ M ++L W++++ GF+ +G ++ + IF
Sbjct: 420 LDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFES 479
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561
+ LKPD F + SAC +G EG +F+ MS++YGI P ++HY +V++LG G
Sbjct: 480 LMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAG 539
Query: 562 YLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR------LNE 615
L EA + I++MP EPD VW L+N CR+ N++L + AE + L+P L+
Sbjct: 540 KLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSN 599
Query: 616 KSKAGLVPVNASELAKEKEN---KKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRG 672
A + + + E+ KK + ++V+++V+ AGD SHP+ D+I +
Sbjct: 600 IYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDE 659
Query: 673 LRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRV 732
+ +M+++G+ P F LHD++++ +E+ L HSE+LAV GLL++P P++++KNLR+
Sbjct: 660 ISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRI 719
Query: 733 CGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
CGDCH+ +K IS GRE+ IRD RFHHFKDG+CSC D+W
Sbjct: 720 CGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 111/267 (41%), Gaps = 40/267 (14%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHV----- 436
L G + G KEA+ + + D T S ++ + GD++ L + +H +V
Sbjct: 224 LSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGL 283
Query: 437 --ERLLSPLRVSTYN------GILKMYSECDSMD---------------------DAFSV 467
++ + + Y GI+ ++++ + M+ + F +
Sbjct: 284 LKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFEL 343
Query: 468 FSNMT-ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526
F T E ++ SW ++I G A+NG +A+++F + + AG+KP+ + AC +
Sbjct: 344 FKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAA 403
Query: 527 VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLM 586
+ G + ++ ++ +++DM G ++ + MP + ++ W LM
Sbjct: 404 LGHGR-STHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLM 461
Query: 587 NLCRMHGNLELGDRCAEIVEQLDPSRL 613
N MHG I E L +RL
Sbjct: 462 NGFSMHGK---AKEVMSIFESLMRTRL 485
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/323 (20%), Positives = 116/323 (35%), Gaps = 79/323 (24%)
Query: 345 GNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLD-GLVKEGKVKEAIEVLGLLEK 403
G I ++AS NC ++ D S + L L K ++I V +
Sbjct: 50 GYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFS 109
Query: 404 QCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTY--NGILKMYSECDSM 461
+ D L + C + A + K +H +S L + + + MY C M
Sbjct: 110 HGLIPDSHVLPNLFKVCAELSAFKVGKQIH--CVSCVSGLDMDAFVQGSMFHMYMRCGRM 167
Query: 462 DDAFSVFSNMTERD-----------------------------------LTSWDTMITGF 486
DA VF M+++D + SW+ +++GF
Sbjct: 168 GDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGF 227
Query: 487 AKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD--------VVEGMLHFESMS 538
++G ++AV +F + G PD + V S ++GD ++ G + + +
Sbjct: 228 NRSGYHKEAVVMFQKIHHLGFCPDQ---VTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLL 284
Query: 539 KDYGIVPSMK-------HYVSIVDM------------------LGSTGYLDEALEFIE-- 571
KD ++ +M H I+ + L G +D+ALE E
Sbjct: 285 KDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELF 344
Query: 572 -KMPMEPDVDVWEKLMNLCRMHG 593
+ ME +V W ++ C +G
Sbjct: 345 KEQTMELNVVSWTSIIAGCAQNG 367
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 277 bits (708), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 146/430 (33%), Positives = 243/430 (56%), Gaps = 21/430 (4%)
Query: 360 CKHEDDFAEASRSSQNNGTLE---QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQL 416
CK D A Q+ + + G + G+ +A+ + + + D T+ +
Sbjct: 385 CKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSV 444
Query: 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDL 476
+ A + AK +H V R V ++ MY++C ++ A +F M+ER +
Sbjct: 445 ITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHV 504
Query: 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFES 536
T+W+ MI G+ +G G+ A+++F + ++ +KP+ F+ V SACS G V G+ F
Sbjct: 505 TTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYM 564
Query: 537 MSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLE 596
M ++Y I SM HY ++VD+LG G L+EA +FI +MP++P V+V+ ++ C++H N+
Sbjct: 565 MKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVN 624
Query: 597 LGDRCAEIVEQLDPS-------------RLNEKSKAGLVPVNASELAKEKENKKLASQNL 643
++ AE + +L+P + K G V V+ + +K ++
Sbjct: 625 FAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVS----MLRQGLRKTPGCSM 680
Query: 644 LEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALL 703
+E++++VH + +G T+HP++ KIYA + L +KEAGY+P+T VL ++ + KE+ L
Sbjct: 681 VEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLS 739
Query: 704 AHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFK 763
HSE+LA+S GLL++ A I + KNLRVC DCH+A K IS + GRE+++RD +RFHHFK
Sbjct: 740 THSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFK 799
Query: 764 DGLCSCRDYW 773
+G CSC DYW
Sbjct: 800 NGACSCGDYW 809
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 17/234 (7%)
Query: 381 QLDGLVKEGKVKEAIEVL-GLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL 439
+D V+ KEA+ + +L++ D+ L AC D LE + +H+ L
Sbjct: 308 MIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGAL-HACADLGDLERGRFIHKLSVEL 366
Query: 440 LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIF 499
VS N ++ MY +C +D A S+F + R L SW+ MI GFA+NG DA++ F
Sbjct: 367 GLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYF 426
Query: 500 SQFKQAGLKPDDQIFIGVFSACSAL-----GDVVEGMLHFESMSKDYGIVPSMKHYVSIV 554
SQ + +KPD ++ V +A + L + G++ + K+ + ++ V
Sbjct: 427 SQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTAL------V 480
Query: 555 DMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608
DM G + A I M E V W +++ HG G E+ E++
Sbjct: 481 DMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTHG---FGKAALELFEEM 530
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 102/208 (49%), Gaps = 4/208 (1%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
L G K + +A++ + + + F+ L++ CGD L K +H + +
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
L + G+ MY++C +++A VF M ERDL SW+T++ G+++NG+ A+++
Sbjct: 166 FSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVK 225
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGM-LHFESMSKDYGIVPSMKHYVSIVDMLGS 559
+ LKP + V A SAL + G +H +M + + ++ ++VDM
Sbjct: 226 SMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIS--TALVDMYAK 283
Query: 560 TGYLDEALEFIEKMPMEPDVDVWEKLMN 587
G L+ A + + M +E +V W +++
Sbjct: 284 CGSLETARQLFDGM-LERNVVSWNSMID 310
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 91/190 (47%), Gaps = 1/190 (0%)
Query: 384 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL 443
G + G + A+E++ + ++ + T ++ A + + K +H + R
Sbjct: 210 GYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDS 269
Query: 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK 503
V+ ++ MY++C S++ A +F M ER++ SW++MI + +N ++A+ IF +
Sbjct: 270 LVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKML 329
Query: 504 QAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYL 563
G+KP D +G AC+ LGD+ G +S + G+ ++ S++ M +
Sbjct: 330 DEGVKPTDVSVMGALHACADLGDLERGRF-IHKLSVELGLDRNVSVVNSLISMYCKCKEV 388
Query: 564 DEALEFIEKM 573
D A K+
Sbjct: 389 DTAASMFGKL 398
Score = 33.9 bits (76), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 451 ILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD 510
++ ++ S+D+A VF + + + TM+ GFAK + A+ F + + ++P
Sbjct: 75 LVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPV 134
Query: 511 DQIFIGVFSACS-----ALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDE 565
F + C +G + G+L S D + ++ +M ++E
Sbjct: 135 VYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLE------NMYAKCRQVNE 188
Query: 566 ALEFIEKMPMEPDVDVWEKLM 586
A + ++MP E D+ W ++
Sbjct: 189 ARKVFDRMP-ERDLVSWNTIV 208
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 276 bits (707), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 226/399 (56%), Gaps = 11/399 (2%)
Query: 384 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL 443
G + + A+E+ +++ + T + +++AC LE H H+ + L
Sbjct: 234 GFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDL 293
Query: 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK 503
++ N ++ MY +C S++DA VF+ M ERD+ +W TMI+G A+NG ++A+ +F + K
Sbjct: 294 ILN--NALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMK 351
Query: 504 QAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYL 563
+G KP+ +GV ACS G + +G +F SM K YGI P +HY ++D+LG G L
Sbjct: 352 SSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKL 411
Query: 564 DEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVP 623
D+A++ + +M EPD W L+ CR+ N+ L + A+ V LDP + +
Sbjct: 412 DDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIY 471
Query: 624 VNASEL---------AKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLR 674
N+ + +++ KK + +EV ++H + GD SHP+ ++ + L
Sbjct: 472 ANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLI 531
Query: 675 AQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCG 734
++ GY+PET FVL D++ E E++L HSE+LA++ GL++ P IRI KNLR+CG
Sbjct: 532 HRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICG 591
Query: 735 DCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
DCH K+ SK+ R ++IRD R+HHF+DG CSC DYW
Sbjct: 592 DCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 73.2 bits (178), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 100/197 (50%), Gaps = 9/197 (4%)
Query: 392 KEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGI 451
++A+E+L L+ + + ++ T+S ++++C + + + +H + + V + +
Sbjct: 144 QKALELLVLMLRDNVRPNVYTYSSVLRSCN---GMSDVRMLHCGIIKEGLESDVFVRSAL 200
Query: 452 LKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD 511
+ ++++ +DA SVF M D W+++I GFA+N + A+++F + K+AG +
Sbjct: 201 IDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQ 260
Query: 512 QIFIGVFSACSALGDVVEGM-LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFI 570
V AC+ L + GM H + D ++ + ++VDM G L++AL
Sbjct: 261 ATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNN----ALVDMYCKCGSLEDALRVF 316
Query: 571 EKMPMEPDVDVWEKLMN 587
+M E DV W +++
Sbjct: 317 NQMK-ERDVITWSTMIS 332
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 104/215 (48%), Gaps = 5/215 (2%)
Query: 372 SSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKA 431
S+ L + L + + A++ + L+ + D T+S+L++ C +A+ E
Sbjct: 23 STDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNL 82
Query: 432 VHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGL 491
+ H+ + N ++ MY + + ++DA +F M +R++ SW TMI+ ++K +
Sbjct: 83 ICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKI 142
Query: 492 GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYV 551
+ A+++ + ++P+ + V +C+ + DV MLH + + G+ +
Sbjct: 143 HQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV--RMLHCGIIKE--GLESDVFVRS 198
Query: 552 SIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLM 586
+++D+ G ++AL ++M + D VW ++
Sbjct: 199 ALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSII 232
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 275 bits (702), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 141/402 (35%), Positives = 229/402 (56%), Gaps = 10/402 (2%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
+ V+ G ++V + K + D+ TF + C A K +H + R
Sbjct: 481 ISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGY 540
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
+ N +++MYS+C ++++ VF M+ RD+ +W MI + G GE A++ F+
Sbjct: 541 ESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFAD 600
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561
+++G+ PD +FI + ACS G V EG+ FE M Y I P ++HY +VD+L +
Sbjct: 601 MEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQ 660
Query: 562 YLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDP-----SRLNEK 616
+ +A EFI+ MP++PD +W ++ CR G++E +R + + +L+P S L
Sbjct: 661 KISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASN 720
Query: 617 SKAGLVPVNASELAKEKENKKLASQN----LLEVRSKVHEYRAGDTSHPETDKIYALIRG 672
+ A L + L ++ K ++N +EV VH + +GD S P+++ IY +
Sbjct: 721 AYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEI 780
Query: 673 LRAQMKEAGYIPETRFVLHDIDQEGKEEALLA-HSERLAVSHGLLSSPARAPIRIMKNLR 731
L + M + GYIP+ R V ++++E ++ L+ HSERLA++ GLL++ P+++MKNLR
Sbjct: 781 LYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLR 840
Query: 732 VCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
VCGDCH K+ISKIVGRE+++RDA RFH FKDG CSC+D W
Sbjct: 841 VCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 107/226 (47%), Gaps = 9/226 (3%)
Query: 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVF 468
DL T S +++ACG + L AK ++ ++ + L + N ++ +Y++C M A VF
Sbjct: 306 DLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVF 365
Query: 469 SNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVV 528
++M +D SW+++I+G+ ++G +A+ +F + D ++ + S + L D+
Sbjct: 366 NSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLK 425
Query: 529 EGM-LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMN 587
G LH + GI + +++DM G + ++L+ M D W +++
Sbjct: 426 FGKGLHSNGIKS--GICIDLSVSNALIDMYAKCGEVGDSLKIFSSMG-TGDTVTWNTVIS 482
Query: 588 LCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLV--PVNASELAK 631
C G+ G ++ Q+ S + LV P+ AS AK
Sbjct: 483 ACVRFGDFATG---LQVTTQMRKSEVVPDMATFLVTLPMCASLAAK 525
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%)
Query: 387 KEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVS 446
K G EA+E G L + +S D TF +++AC E V+E + + +
Sbjct: 83 KNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLF 142
Query: 447 TYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG 506
N ++ MYS + A VF M RDL SW+++I+G++ +G E+A++I+ + K +
Sbjct: 143 VGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSW 202
Query: 507 LKPDDQIFIGVFSACSALGDVVEG 530
+ PD V A L V +G
Sbjct: 203 IVPDSFTVSSVLPAFGNLLVVKQG 226
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 107/242 (44%), Gaps = 13/242 (5%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
+ G ++ G + EA+++ ++ D T+ L+ L+ K +H + +
Sbjct: 380 ISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGI 439
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
+ +S N ++ MY++C + D+ +FS+M D +W+T+I+ + G + + +Q
Sbjct: 440 CIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQ 499
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561
+++ + PD F+ C++L G +G ++ ++++M G
Sbjct: 500 MRKSEVVPDMATFLVTLPMCASLAAKRLGK-EIHCCLLRFGYESELQIGNALIEMYSKCG 558
Query: 562 YLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGL 621
L+ + E+M DV W ++ M+G G++ E ++ K+G+
Sbjct: 559 CLENSSRVFERMS-RRDVVTWTGMIYAYGMYGE---GEKALETFADME--------KSGI 606
Query: 622 VP 623
VP
Sbjct: 607 VP 608
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 464 AFSVFSNMT-ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS 522
+ SVF ++ +++ W+++I F+KNGL +A++ + + +++ + PD F V AC+
Sbjct: 58 SLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACA 117
Query: 523 ALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVW 582
L D G L +E + D G + ++VDM G L A + ++MP+ D+ W
Sbjct: 118 GLFDAEMGDLVYEQI-LDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVR-DLVSW 175
Query: 583 EKLMNLCRMHGNLE 596
L++ HG E
Sbjct: 176 NSLISGYSSHGYYE 189
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 1/146 (0%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
+ G G +EA+E+ L+ I D T S ++ A G+ +++ + +H +
Sbjct: 179 ISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGV 238
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
V NG++ MY + DA VF M RD S++TMI G+ K + E++V +F +
Sbjct: 239 NSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE 298
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDV 527
KPD V AC L D+
Sbjct: 299 -NLDQFKPDLLTVSSVLRACGHLRDL 323
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 274 bits (701), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 215/372 (57%), Gaps = 11/372 (2%)
Query: 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472
S ++ AC LE +++H H + + + ++ MY +C ++D+ F M
Sbjct: 313 ISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP 372
Query: 473 ERDLTSWDTMITGFAKNGLGEDAVDIFSQF--KQAGLKPDDQIFIGVFSACSALGDVVEG 530
E++L + +++I G+A G + A+ +F + + G P+ F+ + SACS G V G
Sbjct: 373 EKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENG 432
Query: 531 MLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCR 590
M F+SM YGI P +HY IVDMLG G ++ A EFI+KMP++P + VW L N CR
Sbjct: 433 MKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACR 492
Query: 591 MHGNLELGDRCAEIVEQLDPS------RLNEKSKAGLVPVNASELAKEKEN---KKLASQ 641
MHG +LG AE + +LDP L+ A A+ + +E + KK A
Sbjct: 493 MHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGY 552
Query: 642 NLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEA 701
+ + V+++VH ++A D SH +I + LR +M+ AGY P+ + L+D+++E K
Sbjct: 553 SWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAE 612
Query: 702 LLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHH 761
+ HSE+LA++ GLLS P PIRI KNLR+CGDCHS K +S V RE+I+RD RFH
Sbjct: 613 VSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHR 672
Query: 762 FKDGLCSCRDYW 773
FKDG+CSC+DYW
Sbjct: 673 FKDGICSCKDYW 684
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 18/193 (9%)
Query: 396 EVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL-SPLRVSTYNGILKM 454
+ LGLL K IS A ++ + VH + + L SP N ++ M
Sbjct: 7 DALGLLLKNAIS---------------ASSMRLGRVVHARIVKTLDSPPPPFLANYLINM 51
Query: 455 YSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF 514
YS+ D + A V R++ SW ++I+G A+NG A+ F + ++ G+ P+D F
Sbjct: 52 YSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTF 111
Query: 515 IGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMP 574
F A ++L V G +++ G + + S DM T D+A + +++P
Sbjct: 112 PCAFKAVASLRLPVTGK-QIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 170
Query: 575 MEPDVDVWEKLMN 587
E +++ W ++
Sbjct: 171 -ERNLETWNAFIS 182
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 89/190 (46%), Gaps = 3/190 (1%)
Query: 386 VKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRV 445
V +G+ +EAIE + + TF + AC D L +H V R V
Sbjct: 185 VTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDV 244
Query: 446 STYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505
S NG++ Y +C + + +F+ M ++ SW +++ + +N E A ++ + ++
Sbjct: 245 SVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKD 304
Query: 506 GLKPDDQIFIGVFSACSALGDVVEGM-LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564
++ D + V SAC+ + + G +H ++ + ++ ++VDM G G ++
Sbjct: 305 IVETSDFMISSVLSACAGMAGLELGRSIHAHAVKA--CVERTIFVGSALVDMYGKCGCIE 362
Query: 565 EALEFIEKMP 574
++ + ++MP
Sbjct: 363 DSEQAFDEMP 372
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 59/141 (41%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
+ GL + G A+ + ++ + + TF +A + K +H +
Sbjct: 80 ISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGR 139
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
L V MY + DDA +F + ER+L +W+ I+ +G +A++ F +
Sbjct: 140 ILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIE 199
Query: 502 FKQAGLKPDDQIFIGVFSACS 522
F++ P+ F +ACS
Sbjct: 200 FRRIDGHPNSITFCAFLNACS 220
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 273 bits (698), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 144/400 (36%), Positives = 227/400 (56%), Gaps = 15/400 (3%)
Query: 387 KEGKVKEAIEVLG--LLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR 444
K GK EA+ + E + S + T ++QAC ALE+ K +H ++ R
Sbjct: 260 KNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSI 319
Query: 445 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504
+ + ++ MY C ++ VF M +RD+ SW+++I+ + +G G+ A+ IF +
Sbjct: 320 LPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLA 379
Query: 505 AGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564
G P F+ V ACS G V EG FE+M +D+GI P ++HY +VD+LG LD
Sbjct: 380 NGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLD 439
Query: 565 EALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPV 624
EA + ++ M EP VW L+ CR+HGN+EL +R + + L+P N + L +
Sbjct: 440 EAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPK--NAGNYVLLADI 497
Query: 625 NA-----------SELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGL 673
A +L + + +KL + +EVR K++ + + D +P ++I+A + L
Sbjct: 498 YAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKL 557
Query: 674 RAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVC 733
MKE GYIP+T+ VL++++ E KE +L HSE+LA++ GL+++ PIRI KNLR+C
Sbjct: 558 AEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLC 617
Query: 734 GDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
DCH K ISK + +E+++RD RFH FK+G+CSC DYW
Sbjct: 618 EDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 18/224 (8%)
Query: 396 EVLGLLEKQ---CISVDLPTFSQLMQACGDAKA----LEEAKAVHEHVERLLSPLRVSTY 448
EVLGL K + D T++ +++AC ++ L + K +H H+ R V
Sbjct: 161 EVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIM 220
Query: 449 NGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL- 507
++ MY+ +D A VF M R++ SW MI +AKNG +A+ F + +
Sbjct: 221 TTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKD 280
Query: 508 -KPDDQIFIGVFSACSALGDVVEG-MLHFESMSKDY-GIVPSMKHYVSIVDMLGSTGYLD 564
P+ + V AC++L + +G ++H + + I+P + ++V M G G L+
Sbjct: 281 SSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVIS---ALVTMYGRCGKLE 337
Query: 565 EALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608
++M + DV W L++ +HG G + +I E++
Sbjct: 338 VGQRVFDRM-HDRDVVSWNSLISSYGVHG---YGKKAIQIFEEM 377
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 8/208 (3%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
+ L KEGK+K+AI VL Q S T+ L+ CG +L +A VH H+ S
Sbjct: 53 IQSLCKEGKLKQAIRVLS----QESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGS 108
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
++ MYS+ S+D A VF +R + W+ + G GE+ + ++ +
Sbjct: 109 DQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWK 168
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDY---GIVPSMKHYVSIVDMLG 558
+ G++ D + V AC A V ++ + + G + ++VDM
Sbjct: 169 MNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYA 228
Query: 559 STGYLDEALEFIEKMPMEPDVDVWEKLM 586
G +D A MP+ +V W ++
Sbjct: 229 RFGCVDYASYVFGGMPVR-NVVSWSAMI 255
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 273 bits (697), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 152/398 (38%), Positives = 242/398 (60%), Gaps = 26/398 (6%)
Query: 396 EVLGLLEKQCISVDLP---TFSQLMQACGDAKALEEAKAVHEHVERLL------SPLRVS 446
E L L ++ S + P T ++ AC A++ + +H ++++ L S LR S
Sbjct: 350 EALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS 409
Query: 447 TYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG 506
++ MY++C ++ A VF+++ + L+SW+ MI GFA +G + + D+FS+ ++ G
Sbjct: 410 ----LIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG 465
Query: 507 LKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEA 566
++PDD F+G+ SACS G + G F +M++DY + P ++HY ++D+LG +G EA
Sbjct: 466 IQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEA 525
Query: 567 LEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPVNA 626
E I M MEPD +W L+ C+MHGN+ELG+ AE + +++P N S L + A
Sbjct: 526 EEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPE--NPGSYVLLSNIYA 583
Query: 627 S-----ELAK------EKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRA 675
S E+AK +K KK+ + +E+ S VHE+ GD HP +IY ++ +
Sbjct: 584 SAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEV 643
Query: 676 QMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGD 735
+++AG++P+T VL ++++E KE AL HSE+LA++ GL+S+ + I+KNLRVC +
Sbjct: 644 LLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRN 703
Query: 736 CHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
CH A K+ISKI RE+I RD RFHHF+DG+CSC DYW
Sbjct: 704 CHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 131/290 (45%), Gaps = 12/290 (4%)
Query: 305 IHQNSPSFYQQDQNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHED 364
+H + S Y Q NG + + + + + ++P+ SY+ I+ + N K D
Sbjct: 171 VHTSLISMYVQ--NG---RLEDAHKVFDKSPHR-DVVSYTALIKGYASRGYIENAQKLFD 224
Query: 365 DFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAK 424
+ S N + G + G KEA+E+ + K + D T ++ AC +
Sbjct: 225 EIPVKDVVSWN----AMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSG 280
Query: 425 ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMIT 484
++E + VH ++ + N ++ +YS+C ++ A +F + +D+ SW+T+I
Sbjct: 281 SIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIG 340
Query: 485 GFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG-MLHFESMSKDYGI 543
G+ L ++A+ +F + ++G P+D + + AC+ LG + G +H + G+
Sbjct: 341 GYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGV 400
Query: 544 VPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHG 593
+ S++DM G ++ A + + + + W ++ MHG
Sbjct: 401 TNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHG 449
Score = 79.7 bits (195), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 94/206 (45%), Gaps = 33/206 (16%)
Query: 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNM 471
TF ++++C +KA +E + +H HV +L L + + ++ MY + ++DA VF
Sbjct: 136 TFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKS 195
Query: 472 TERDLTS-------------------------------WDTMITGFAKNGLGEDAVDIFS 500
RD+ S W+ MI+G+A+ G ++A+++F
Sbjct: 196 PHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
+ ++PD+ + V SAC+ G + G D+G ++K +++D+
Sbjct: 256 DMMKTNVRPDESTMVTVVSACAQSGSIELGR-QVHLWIDDHGFGSNLKIVNALIDLYSKC 314
Query: 561 GYLDEALEFIEKMPMEPDVDVWEKLM 586
G L+ A E++P + DV W L+
Sbjct: 315 GELETACGLFERLPYK-DVISWNTLI 339
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 464 AFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA 523
A SVF + E +L W+TM G A + A+ ++ GL P+ F V +C+
Sbjct: 87 AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK 146
Query: 524 LGDVVEG-MLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMP 574
EG +H + G + + S++ M G L++A + +K P
Sbjct: 147 SKAFKEGQQIHGHVLK--LGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSP 196
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 273 bits (697), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 135/403 (33%), Positives = 239/403 (59%), Gaps = 10/403 (2%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ G + + EA+ + ++ + + + T ++ +C +L+ K +H++ ++
Sbjct: 201 MITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHS 260
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
V ++ M+++C S+DDA S+F M +D +W MI +A +G E ++ +F
Sbjct: 261 FCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFE 320
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
+ + ++PD+ F+G+ +ACS G V EG +F M +GIVPS+KHY S+VD+L
Sbjct: 321 RMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRA 380
Query: 561 GYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR-------- 612
G L++A EFI+K+P+ P +W L+ C H NL+L ++ +E + +LD S
Sbjct: 381 GNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILS 440
Query: 613 -LNEKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIR 671
L ++K + ++ K+++ K+ + +EV + VHE+ +GD T K++ +
Sbjct: 441 NLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALD 500
Query: 672 GLRAQMKEAGYIPETRFVLH-DIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNL 730
+ ++K +GY+P+T V+H +++ + KE L HSE+LA++ GLL++P IR++KNL
Sbjct: 501 EMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNL 560
Query: 731 RVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
RVC DCH+A K+IS I GR++++RD +RFHHF+DG CSC D+W
Sbjct: 561 RVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 2/185 (1%)
Query: 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNM 471
TF L++AC AKALEE + +H +L V ++ MY+EC+ +D A VF +
Sbjct: 131 TFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRI 190
Query: 472 TERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM 531
E + ++ MITG+A+ +A+ +F + + LKP++ + V S+C+ LG + G
Sbjct: 191 VEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGK 250
Query: 532 LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRM 591
+K + +K +++DM G LD+A+ EKM + D W ++
Sbjct: 251 W-IHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVAYAN 308
Query: 592 HGNLE 596
HG E
Sbjct: 309 HGKAE 313
Score = 39.7 bits (91), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 416 LMQACGDAKALEE--AKAVHEHVERLLSPLRVSTYNGILKMYSEC---DSMDDAFSVFSN 470
L+ C + L + A A+ H+E VS ++ +E SM A +F
Sbjct: 35 LISKCNSLRELMQIQAYAIKSHIED------VSFVAKLINFCTESPTESSMSYARHLFEA 88
Query: 471 MTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG 530
M+E D+ +++M G+++ + +F + + G+ PD+ F + AC+ + EG
Sbjct: 89 MSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEG 148
Query: 531 -MLHFESM 537
LH SM
Sbjct: 149 RQLHCLSM 156
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 271 bits (694), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 143/410 (34%), Positives = 246/410 (60%), Gaps = 20/410 (4%)
Query: 382 LDGLVKEGKVKEAIEVLGLLE-----KQCISVDLPTFSQLMQACGDAKALEEAKAVHEHV 436
++G V GK KEA+++ ++ + + + T S ++ ACG ALE+ K VH ++
Sbjct: 166 INGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYI 225
Query: 437 ERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNM-TERDLTSWDTMITGFAKNGLGEDA 495
++ + + ++ MY++C S++ A VF+ + +++D+ ++ MI A GL ++
Sbjct: 226 DKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDEC 285
Query: 496 VDIFSQFKQA-GLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIV 554
+FS+ + + P+ F+G+ AC G + EG +F+ M +++GI PS++HY +V
Sbjct: 286 FQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMV 345
Query: 555 DMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN 614
D+ G +G + EA FI MPMEPDV +W L++ RM G+++ + + + +LDP +N
Sbjct: 346 DLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDP--MN 403
Query: 615 EKSKAGLVPVNASE--------LAKEKENK---KLASQNLLEVRSKVHEYRAGDTSHPET 663
+ L V A + E E K K+ + +EV VHE+ GD S E+
Sbjct: 404 SGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQES 463
Query: 664 DKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAP 723
++IYA++ + +++EAGY+ +T+ VL D++++ KE AL HSE+LA++ L+ + P
Sbjct: 464 ERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTP 523
Query: 724 IRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
+RI+KNLR+CGDCH +K+ISK+ RE+++RD RFHHF+DG CSCRD+W
Sbjct: 524 VRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 83/172 (48%), Gaps = 9/172 (5%)
Query: 445 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK- 503
+ +N ++ Y++ +DDA +F M ER++ SW +I G+ G ++A+D+F + +
Sbjct: 128 LPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQL 187
Query: 504 ----QAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGS 559
+A ++P++ V SAC LG + +G + K Y + + +++DM
Sbjct: 188 PKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDK-YHVEIDIVLGTALIDMYAK 246
Query: 560 TGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611
G L+ A + + DV + ++ M+G L D C ++ ++ S
Sbjct: 247 CGSLERAKRVFNALGSKKDVKAYSAMICCLAMYG---LTDECFQLFSEMTTS 295
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 271 bits (694), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/403 (33%), Positives = 230/403 (57%), Gaps = 10/403 (2%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ GL + G +E +++ ++++ FS +++C A + H + ++
Sbjct: 388 MISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIG 447
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
+S N ++ MY++C +++A VF M D SW+ +I ++G G +AVD++
Sbjct: 448 FDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYE 507
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
+ + G++PD + V +ACS G V +G +F+SM Y I P HY ++D+L +
Sbjct: 508 EMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRS 567
Query: 561 GYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDP---------S 611
G +A IE +P +P ++WE L++ CR+HGN+ELG A+ + L P S
Sbjct: 568 GKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLS 627
Query: 612 RLNEKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIR 671
++ + +L +++ KK + + +E+ ++VH + DTSHPE + +Y ++
Sbjct: 628 NMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQ 687
Query: 672 GLRAQMKEAGYIPETRFVLHDIDQEG-KEEALLAHSERLAVSHGLLSSPARAPIRIMKNL 730
L +M+ GY+P+T FVLHD++ +G KE+ L HSE++AV+ GL+ P IRI KNL
Sbjct: 688 DLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNL 747
Query: 731 RVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
R CGDCH+ + +S +V R++I+RD KRFHHF++G CSC ++W
Sbjct: 748 RTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 121/281 (43%), Gaps = 42/281 (14%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ G V G +EA+E++ + I +D T+ +++AC A L+ K VH +V R
Sbjct: 257 MISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRR- 315
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDT------------------- 481
N ++ +Y +C D+A ++F M +DL SW+
Sbjct: 316 EDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFK 375
Query: 482 ------------MITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVE 529
MI+G A+NG GE+ + +FS K+ G +P D F G +C+ LG
Sbjct: 376 EMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCN 435
Query: 530 GMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLC 589
G + + K G S+ +++ M G ++EA + MP V W L+
Sbjct: 436 GQQYHAQLLK-IGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVS-WNALIAAL 493
Query: 590 RMHGN-LELGDRCAEIVEQ-LDPSR------LNEKSKAGLV 622
HG+ E D E++++ + P R L S AGLV
Sbjct: 494 GQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLV 534
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 43/180 (23%)
Query: 446 STYNGILKMYSECDS----MDDAFSVFSNMTERDLTSWDTMITGFAKNG---LGE----- 493
S N ++ +YS+C S + A VF + E+D SW TM+TG+ KNG LGE
Sbjct: 185 SVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEG 244
Query: 494 ------------------------DAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVE 529
+A+++ + +G++ D+ + V AC+ G +
Sbjct: 245 MDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQL 304
Query: 530 G-MLHFESMSK-DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMN 587
G +H + + D+ S S+V + G DEA EKMP + D+ W L++
Sbjct: 305 GKQVHAYVLRREDF----SFHFDNSLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLS 359
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 6/139 (4%)
Query: 474 RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLH 533
RD ++ MITGF+ N G A+++F + K G KPD+ F V + + + D + +
Sbjct: 111 RDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQ 170
Query: 534 FESMSKDYG---IVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCR 590
F + + G I VS+ S+ L + + +E D W +M
Sbjct: 171 FHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYV 230
Query: 591 MHGNLELGDRCAEIVEQLD 609
+G +LG+ E++E +D
Sbjct: 231 KNGYFDLGE---ELLEGMD 246
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 271 bits (692), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/398 (36%), Positives = 230/398 (57%), Gaps = 22/398 (5%)
Query: 396 EVLGLLEKQC---ISVDLPTFSQLMQACGDAKALEEAKAVHE--HVERLLSPLRVSTYNG 450
E L + E+ C I D+ + ++ AC + L++AK VH HV L S L ++ N
Sbjct: 327 EALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSIN--NA 384
Query: 451 ILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD 510
++ MY++C +D VF M R++ SW +MI + +G DA+ +F++ KQ ++P+
Sbjct: 385 LINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPN 444
Query: 511 DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFI 570
+ F+GV CS G V EG F SM+ +Y I P ++HY +VD+ G L EALE I
Sbjct: 445 EVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVI 504
Query: 571 EKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDP---------SRLNEKSKAGL 621
E MP+ +V +W LM+ CR+HG LELG A+ + +L+P S + + +
Sbjct: 505 ESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWE 564
Query: 622 VPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAG 681
N + +EK K + ++ K HE+ GD H ++++IYA + + +++K AG
Sbjct: 565 DVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAG 624
Query: 682 YIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPAR------APIRIMKNLRVCGD 735
Y+P+ VL D+++E K++ +L HSE+LA+ GL++ IRI+KNLRVC D
Sbjct: 625 YVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCED 684
Query: 736 CHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
CH K++SK+ RE+I+RD RFH +K+GLCSCRDYW
Sbjct: 685 CHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 1/168 (0%)
Query: 408 VDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSV 467
+D +F +++A AL E +H ++ + G + MY+ C ++ A +V
Sbjct: 109 LDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNV 168
Query: 468 FSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDV 527
F M+ RD+ +W+TMI + + GL ++A +F + K + + PD+ I + SAC G++
Sbjct: 169 FDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNM 228
Query: 528 VEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPM 575
+E + ++ + ++V M G +D A EF KM +
Sbjct: 229 RYNRAIYEFLIEN-DVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSV 275
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 14/156 (8%)
Query: 443 LRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQF 502
L VST ++ YS+C +DDA +F ++DL W TMI+ + ++ ++A+ +F +
Sbjct: 278 LFVST--AMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEM 335
Query: 503 KQAGLKPDDQIFIGVFSACSALGDV-----VEGMLHFESMSKDYGIVPSMKHYVSIVDML 557
+G+KPD V SAC+ LG + V +H + + I ++ ++M
Sbjct: 336 CCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNAL------INMY 389
Query: 558 GSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHG 593
G LD + EKMP +V W ++N MHG
Sbjct: 390 AKCGGLDATRDVFEKMP-RRNVVSWSSMINALSMHG 424
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 270 bits (690), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/404 (37%), Positives = 231/404 (57%), Gaps = 14/404 (3%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQ-CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ GLV+ +EAIEV ++ Q ++ D T + ACG AL+ AK ++ ++E+
Sbjct: 441 ISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNG 500
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
L V ++ M+S C + A S+F+++T RD+++W I A G E A+++F
Sbjct: 501 IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFD 560
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
+ GLKPD F+G +ACS G V +G F SM K +G+ P HY +VD+LG
Sbjct: 561 DMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRA 620
Query: 561 GYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL------- 613
G L+EA++ IE MPMEP+ +W L+ CR+ GN+E+ AE ++ L P R
Sbjct: 621 GLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLS 680
Query: 614 NEKSKAG----LVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYAL 669
N + AG + V S KEK +K + +++R K HE+ +GD SHPE I A+
Sbjct: 681 NVYASAGRWNDMAKVRLS--MKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAM 738
Query: 670 IRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKN 729
+ + + G++P+ VL D+D++ K L HSE+LA+++GL+SS IRI+KN
Sbjct: 739 LDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKN 798
Query: 730 LRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
LRVC DCHS K SK+ RE+I+RD RFH+ + G CSC D+W
Sbjct: 799 LRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 6/204 (2%)
Query: 368 EASRSSQNNGTLEQLDGLVK----EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDA 423
E +S++ GT + L++ G EAI + + IS D TF + AC +
Sbjct: 88 EVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKS 147
Query: 424 KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMI 483
+A +H + ++ + N ++ Y+EC +D A VF M+ER++ SW +MI
Sbjct: 148 RAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMI 207
Query: 484 TGFAKNGLGEDAVDIFSQF-KQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYG 542
G+A+ +DAVD+F + + + P+ + V SAC+ L D+ G + + ++ G
Sbjct: 208 CGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY-AFIRNSG 266
Query: 543 IVPSMKHYVSIVDMLGSTGYLDEA 566
I + ++VDM +D A
Sbjct: 267 IEVNDLMVSALVDMYMKCNAIDVA 290
Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 34/229 (14%)
Query: 386 VKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVER------- 438
V++G +EA+ V L+ + D + + +C + + K+ H +V R
Sbjct: 313 VRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWD 372
Query: 439 ------------------------LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER 474
+S V T+N I+ Y E +D A+ F M E+
Sbjct: 373 NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEK 432
Query: 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFK-QAGLKPDDQIFIGVFSACSALGDVVEGMLH 533
++ SW+T+I+G + L E+A+++F + Q G+ D + + SAC LG +
Sbjct: 433 NIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWI 492
Query: 534 FESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVW 582
+ + K+ GI ++ ++VDM G + A+ + DV W
Sbjct: 493 YYYIEKN-GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLT-NRDVSAW 539
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Query: 384 GLVKEGKVKEAIEVL-GLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSP 442
G + K+A+++ ++ + ++ + T ++ AC + LE + V+ +
Sbjct: 209 GYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIE 268
Query: 443 LRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQF 502
+ + ++ MY +C+++D A +F +L + M + + + GL +A+ +F+
Sbjct: 269 VNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM 328
Query: 503 KQAGLKPDDQIFIGVFSACSALGDVVEG 530
+G++PD + S+CS L +++ G
Sbjct: 329 MDSGVRPDRISMLSAISSCSQLRNILWG 356
>sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680
OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1
Length = 710
Score = 270 bits (689), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 136/401 (33%), Positives = 227/401 (56%), Gaps = 9/401 (2%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
+D ++ +EA+ + ++ + + + TF+ L+ + + L++ +H V +
Sbjct: 310 MDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGY 369
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
V N ++ MY++ S++DA FS MT RD+ +W+TMI+G + +GLG +A++ F +
Sbjct: 370 RNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDR 429
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561
G P+ FIGV ACS +G V +G+ +F + K + + P ++HY IV +L G
Sbjct: 430 MIFTGEIPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAG 489
Query: 562 YLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDP---------SR 612
+A +F+ P+E DV W L+N C + N LG + AE + P S
Sbjct: 490 MFKDAEDFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSN 549
Query: 613 LNEKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRG 672
++ KS+ L + KK + + +R++ H + A D HPE IYA ++
Sbjct: 550 IHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKE 609
Query: 673 LRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRV 732
+ +++K GY P+ HD+D+E +E+ L HSE+LAV++GL+ +P ++P+ + KN+R+
Sbjct: 610 VMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRI 669
Query: 733 CGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
C DCHSA+K+ISKI R ++IRD+ RFHHF DG CSC DYW
Sbjct: 670 CDDCHSAIKLISKISKRYIVIRDSNRFHHFLDGQCSCCDYW 710
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 107/246 (43%), Gaps = 18/246 (7%)
Query: 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVS---TYNGILKMYSECDSMDDAFSVFS 469
++L++ C ++ L +++H H+ R N ++ +Y +C A +F
Sbjct: 34 LNELLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFD 93
Query: 470 NMTERDLTSWDTMITGFAKNGLGEDAVDIF-SQFKQAGLKPDDQIFIGVFSACSALGDVV 528
M ER++ SW M+ G+ +G + + +F S F +P++ + VF +CS G +
Sbjct: 94 LMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIE 153
Query: 529 EGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNL 588
EG F YG++ ++V M EA+ ++ +P D+ V+ ++
Sbjct: 154 EGK-QFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPY-CDLSVFSSALS- 210
Query: 589 CRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPVNASELAKEKENKKLASQNL-LEVR 647
G LE C E LD L + + V N + L+ + L NL L+V
Sbjct: 211 ----GYLE----CGAFKEGLDV--LRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVH 260
Query: 648 SKVHEY 653
S++ +
Sbjct: 261 SRMVRF 266
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 106/228 (46%), Gaps = 16/228 (7%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
L G ++ G KE ++VL + + T+ ++ + + L A VH + R
Sbjct: 209 LSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVRFGF 268
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
V ++ MY +C + A VF + +++ T++ + ++ E+A+++FS+
Sbjct: 269 NAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSK 328
Query: 502 FKQAGLKPDDQIFIGVFSACSAL-----GDVVEGMLHFESMSKDYGIVPSMKHYVSIVDM 556
+ P++ F + ++ + L GD++ G++ +S +++ +V + ++V+M
Sbjct: 329 MDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLV-LKSGYRNHVMVGN-----ALVNM 382
Query: 557 LGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHG----NLELGDR 600
+G +++A + M D+ W +++ C HG LE DR
Sbjct: 383 YAKSGSIEDARKAFSGMTFR-DIVTWNTMISGCSHHGLGREALEAFDR 429
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 269 bits (687), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 148/408 (36%), Positives = 228/408 (55%), Gaps = 23/408 (5%)
Query: 384 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL 443
G +EG+ EA+ + L++ +D S ++ D L + K + +L S L
Sbjct: 287 GYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGL 346
Query: 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK 503
S N ++ MY +C +D+A F+ M +D+ SW +ITG+ K+GLG+ +V IF +
Sbjct: 347 ETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEML 406
Query: 504 QAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYL 563
+ ++PD+ ++ V SACS G + EG F + + +GI P ++HY +VD+LG G L
Sbjct: 407 RHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRL 466
Query: 564 DEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVP 623
EA I+ MP++P+V +W+ L++LCR+HG++ELG +I+ ++D K+ A V
Sbjct: 467 KEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDA-----KNPANYVM 521
Query: 624 V--------------NASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYAL 669
+ NA EL K KK A + +E+ +VH +R+G+ SHP T I
Sbjct: 522 MSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQET 581
Query: 670 IRGLRAQMK-EAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPAR---APIR 725
++ +++ E GY+ + LHDID E KEE L AHSE+LA+ L + IR
Sbjct: 582 LKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKGKTIR 641
Query: 726 IMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
+ KNLRVC DCH +K +SKI ++RDA RFH F+DG CSC DYW
Sbjct: 642 VFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDYW 689
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 4/208 (1%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
+ G V G +K ++ + + +Q I + TFS ++ACG ALE+ +H ++
Sbjct: 79 MSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGF 138
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
+ V N ++ MYS+C +++A VF + +R L SW+ MI GF G G A+D F
Sbjct: 139 EMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGM 198
Query: 502 FKQAGLK--PDDQIFIGVFSACSALGDVVEG-MLHFESMSKDYGIVPSMKHYVSIVDMLG 558
++A +K PD+ + ACS+ G + G +H + + S S+VD+
Sbjct: 199 MQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYV 258
Query: 559 STGYLDEALEFIEKMPMEPDVDVWEKLM 586
GYL A + +++ E + W L+
Sbjct: 259 KCGYLFSARKAFDQIK-EKTMISWSSLI 285
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 416 LMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERD 475
+++ C ++ VH ++ + S L + T N ++ MY +C A+ VF +M ER+
Sbjct: 12 ILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERN 71
Query: 476 LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM-LHF 534
+ SW +++G NG + ++ +FS+ + G+ P++ F AC L + +G+ +H
Sbjct: 72 VVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHG 131
Query: 535 ESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEA 566
+ + ++ + + S+VDM G ++EA
Sbjct: 132 FCLKIGFEMMVEVGN--SLVDMYSKCGRINEA 161
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 139/399 (34%), Positives = 227/399 (56%), Gaps = 11/399 (2%)
Query: 386 VKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRV 445
V+ G A+E + + D T ++ ACG +LE + +++ + +
Sbjct: 186 VQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNI 245
Query: 446 STYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505
N L M+ +C + + A +F M +R++ SW TMI G+A NG +A+ +F+ +
Sbjct: 246 IVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNE 305
Query: 506 GLKPDDQIFIGVFSACSALGDVVEGMLHFESM--SKDYGIVPSMKHYVSIVDMLGSTGYL 563
GL+P+ F+GV SACS G V EG +F M S D + P +HY +VD+LG +G L
Sbjct: 306 GLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLL 365
Query: 564 DEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS-------RLNEK 616
+EA EFI+KMP+EPD +W L+ C +H ++ LG + A+++ + P N
Sbjct: 366 EEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIY 425
Query: 617 SKAGLVPVNASELAKEKE--NKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLR 674
+ AG +K ++ KK+A+ + +E K+H + GD SHP++ IY + +
Sbjct: 426 AAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEIL 485
Query: 675 AQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCG 734
++++ GY+P+T V HD++ E KE +L HSE+LA++ GL+ PIR+MKNLR C
Sbjct: 486 KKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCD 545
Query: 735 DCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
DCH+ K +S + E+I+RD RFHHF++G+CSC+++W
Sbjct: 546 DCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 6/183 (3%)
Query: 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472
S+L++A ++ K +H V R + S +L+ M A VF M
Sbjct: 13 LSELLRASSSKP--KQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMH 70
Query: 473 ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM- 531
+ + W+T+ G+ +N L +++ ++ + + G++PD+ + V A S LGD G
Sbjct: 71 KPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFA 130
Query: 532 LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRM 591
LH + +G + + +V M G L A E M ++ D+ W + +C
Sbjct: 131 LHAHVVKYGFGCLGIVA--TELVMMYMKFGELSSAEFLFESMQVK-DLVAWNAFLAVCVQ 187
Query: 592 HGN 594
GN
Sbjct: 188 TGN 190
Score = 37.0 bits (84), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 43/97 (44%)
Query: 431 AVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNG 490
A+H HV + ++ MY + + A +F +M +DL +W+ + + G
Sbjct: 130 ALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTG 189
Query: 491 LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDV 527
A++ F++ ++ D + + SAC LG +
Sbjct: 190 NSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSL 226
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 266 bits (681), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 134/399 (33%), Positives = 223/399 (55%), Gaps = 10/399 (2%)
Query: 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR 444
L K+ +V E + ++++ I T + ++ AC AL K +H + +
Sbjct: 312 LSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPD 371
Query: 445 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504
V N ++ MY +C ++ + VF M +DL SW+ M+ +A NG E+ +++F +
Sbjct: 372 VPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIE 431
Query: 505 AGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564
+G+ PD F+ + S CS G G+ FE M ++ + P+++HY +VD+LG G +
Sbjct: 432 SGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIK 491
Query: 565 EALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDP---------SRLNE 615
EA++ IE MP +P +W L+N CR+HGN+ +G+ A+ + L+P S +
Sbjct: 492 EAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYA 551
Query: 616 KSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRA-GDTSHPETDKIYALIRGLR 674
+K E+ K++ KK A + ++V+ K+ + A G +D+ + L+
Sbjct: 552 DAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTELQ 611
Query: 675 AQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCG 734
++++GY P T VLHD+D+E K + HSERLA ++ L+ + PIRI KNLRVC
Sbjct: 612 EAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRVCA 671
Query: 735 DCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
DCHS +KI+S++ R +++RD KRFHHF DG+CSC+DYW
Sbjct: 672 DCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 710
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 94/187 (50%), Gaps = 6/187 (3%)
Query: 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNM 471
+ S ++AC D K L + +H + + + YN +LK+Y E DDA VF M
Sbjct: 238 SISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGM 297
Query: 472 TERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM 531
+ER++ +W+++I+ +K + ++F + ++ + + ACS + ++ G
Sbjct: 298 SERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLTGK 357
Query: 532 -LHFESM-SKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLC 589
+H + + SK+ VP + S++DM G G ++ + + M + D+ W ++N
Sbjct: 358 EIHAQILKSKEKPDVPLLN---SLMDMYGKCGEVEYSRRVFDVM-LTKDLASWNIMLNCY 413
Query: 590 RMHGNLE 596
++GN+E
Sbjct: 414 AINGNIE 420
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 25/219 (11%)
Query: 384 GLVKEGKVKEAIEVLGLLEKQCISVDLP-TFSQLMQACGDAKALEEAKAV---------H 433
GL K K+ EA+ ++ ++ P ++ L+ AC AK+L +
Sbjct: 104 GLSKSTKLDEAVTLIENSSSSPSNLSTPEAYTDLLHACISAKSLHHGIKICSLILNNPSL 163
Query: 434 EHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTS---WDTMITGFAKNG 490
H +LLS L + ++S C +D A +F ++T+ L + W M G+++NG
Sbjct: 164 RHNPKLLSKL--------ITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNG 215
Query: 491 LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM-LHFESMSKDYGIVPSMKH 549
DA+ ++ + ++P + AC L D+ G +H + + + +
Sbjct: 216 SPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKV--DQVV 273
Query: 550 YVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNL 588
Y ++ + +G D+A + + M E +V W L+++
Sbjct: 274 YNVLLKLYMESGLFDDARKVFDGMS-ERNVVTWNSLISV 311
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 304,458,575
Number of Sequences: 539616
Number of extensions: 14100483
Number of successful extensions: 46454
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 441
Number of HSP's that attempted gapping in prelim test: 32607
Number of HSP's gapped (non-prelim): 5635
length of query: 773
length of database: 191,569,459
effective HSP length: 125
effective length of query: 648
effective length of database: 124,117,459
effective search space: 80428113432
effective search space used: 80428113432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)