Query 004114
Match_columns 773
No_of_seqs 503 out of 3988
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 17:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.8E-85 3.8E-90 785.4 48.6 443 331-773 240-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2.7E-81 5.8E-86 765.4 48.7 441 328-771 402-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 2.8E-45 6E-50 448.4 29.3 430 331-767 203-678 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.3E-43 2.8E-48 424.5 34.6 418 329-767 137-582 (697)
5 PLN03218 maturation of RBCL 1; 100.0 1E-42 2.2E-47 425.4 38.8 415 330-752 452-912 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 8.6E-39 1.9E-43 390.9 40.6 335 347-694 434-797 (1060)
7 PF14432 DYW_deaminase: DYW fa 99.9 7E-25 1.5E-29 203.3 7.4 106 640-763 2-116 (116)
8 PRK11788 tetratricopeptide rep 99.7 5.6E-15 1.2E-19 164.3 32.2 284 334-622 54-363 (389)
9 PRK11788 tetratricopeptide rep 99.7 2E-14 4.3E-19 160.0 32.1 249 360-612 45-315 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.6 1.4E-12 3.1E-17 157.8 35.8 259 350-613 499-770 (899)
11 TIGR02917 PEP_TPR_lipo putativ 99.6 4.2E-12 9.1E-17 153.8 37.2 262 347-614 530-805 (899)
12 PRK15174 Vi polysaccharide exp 99.3 1.1E-09 2.3E-14 131.0 33.3 258 349-613 109-386 (656)
13 PRK15174 Vi polysaccharide exp 99.3 1.3E-09 2.7E-14 130.5 33.0 288 331-627 58-373 (656)
14 PF13041 PPR_2: PPR repeat fam 99.2 2.7E-11 5.8E-16 95.4 6.7 50 474-523 1-50 (50)
15 TIGR00990 3a0801s09 mitochondr 99.2 4.5E-08 9.7E-13 116.5 33.8 263 346-612 156-500 (615)
16 TIGR00990 3a0801s09 mitochondr 99.1 8.9E-08 1.9E-12 114.0 35.7 220 389-614 308-543 (615)
17 PRK11447 cellulose synthase su 99.1 3.1E-07 6.7E-12 116.9 37.5 259 348-613 301-637 (1157)
18 KOG4626 O-linked N-acetylgluco 99.1 1.2E-08 2.6E-13 114.5 21.4 277 327-613 128-422 (966)
19 PRK10049 pgaA outer membrane p 99.1 3.7E-07 8E-12 111.4 36.4 265 347-615 46-395 (765)
20 KOG4422 Uncharacterized conser 99.1 1.7E-08 3.7E-13 109.4 21.6 221 383-608 123-385 (625)
21 PRK10049 pgaA outer membrane p 99.1 2.3E-07 5E-12 113.1 34.6 193 418-613 245-461 (765)
22 KOG4626 O-linked N-acetylgluco 99.1 1.8E-08 3.9E-13 113.2 22.4 228 381-617 258-494 (966)
23 PRK11447 cellulose synthase su 99.0 4.3E-07 9.3E-12 115.7 36.7 222 381-612 467-704 (1157)
24 PRK09782 bacteriophage N4 rece 99.0 7.2E-08 1.6E-12 119.1 28.3 226 388-622 489-720 (987)
25 KOG4422 Uncharacterized conser 99.0 2.4E-07 5.1E-12 100.7 27.9 259 328-608 251-551 (625)
26 PF13429 TPR_15: Tetratricopep 99.0 1.1E-09 2.5E-14 117.0 9.9 211 387-605 56-274 (280)
27 PF13041 PPR_2: PPR repeat fam 99.0 8.7E-10 1.9E-14 86.7 6.7 50 408-457 1-50 (50)
28 PF13429 TPR_15: Tetratricopep 99.0 2.4E-09 5.1E-14 114.6 12.3 238 381-623 14-265 (280)
29 TIGR02521 type_IV_pilW type IV 99.0 2.1E-07 4.5E-12 93.8 25.6 193 413-608 34-232 (234)
30 TIGR02521 type_IV_pilW type IV 99.0 2.9E-07 6.4E-12 92.7 25.8 189 380-573 36-229 (234)
31 PRK10747 putative protoheme IX 98.9 1.1E-06 2.3E-11 99.2 31.4 244 358-608 126-390 (398)
32 PRK09782 bacteriophage N4 rece 98.9 5E-07 1.1E-11 111.8 30.9 257 349-613 476-745 (987)
33 KOG1126 DNA-binding cell divis 98.9 1.3E-07 2.7E-12 108.0 21.9 215 390-613 334-557 (638)
34 TIGR00540 hemY_coli hemY prote 98.9 2.4E-06 5.2E-11 96.7 31.8 257 347-606 114-397 (409)
35 KOG1126 DNA-binding cell divis 98.9 1.7E-07 3.7E-12 106.9 22.0 172 445-621 421-599 (638)
36 PRK14574 hmsH outer membrane p 98.8 6.3E-06 1.4E-10 100.3 33.1 134 483-616 299-453 (822)
37 PRK10747 putative protoheme IX 98.8 2.7E-06 5.8E-11 96.1 26.6 220 388-614 97-329 (398)
38 KOG1840 Kinesin light chain [C 98.7 1.8E-06 4E-11 99.0 23.1 227 381-607 205-478 (508)
39 PRK12370 invasion protein regu 98.7 5.5E-06 1.2E-10 97.6 26.3 210 389-607 275-501 (553)
40 KOG4318 Bicoid mRNA stability 98.6 2E-07 4.2E-12 108.7 12.6 91 396-494 11-101 (1088)
41 KOG4318 Bicoid mRNA stability 98.6 8.1E-07 1.8E-11 103.7 16.7 81 336-428 11-101 (1088)
42 PRK14574 hmsH outer membrane p 98.6 5.5E-05 1.2E-09 92.2 32.2 267 347-615 200-520 (822)
43 COG2956 Predicted N-acetylgluc 98.5 7.3E-05 1.6E-09 79.6 27.3 236 352-591 71-327 (389)
44 KOG1129 TPR repeat-containing 98.5 4.9E-06 1.1E-10 88.1 17.9 229 379-612 227-462 (478)
45 KOG2003 TPR repeat-containing 98.5 2.2E-05 4.8E-10 85.9 23.2 227 382-613 426-694 (840)
46 PRK11189 lipoprotein NlpI; Pro 98.5 3.1E-05 6.7E-10 83.9 24.7 221 384-612 35-269 (296)
47 TIGR00540 hemY_coli hemY prote 98.5 2.8E-05 6.1E-10 88.1 25.2 240 381-622 88-344 (409)
48 PRK12370 invasion protein regu 98.5 1.6E-05 3.4E-10 93.7 23.6 208 388-606 317-533 (553)
49 COG2956 Predicted N-acetylgluc 98.5 3.3E-05 7.2E-10 82.1 22.4 220 388-611 48-281 (389)
50 COG3071 HemY Uncharacterized e 98.5 0.00024 5.3E-09 77.5 29.5 219 382-607 160-389 (400)
51 KOG2076 RNA polymerase III tra 98.4 0.00022 4.7E-09 84.4 30.4 294 327-623 151-500 (895)
52 PF12854 PPR_1: PPR repeat 98.4 3.2E-07 6.8E-12 66.3 4.4 34 439-472 1-34 (34)
53 KOG1840 Kinesin light chain [C 98.4 7.6E-05 1.7E-09 85.9 25.4 223 351-573 200-476 (508)
54 PF04733 Coatomer_E: Coatomer 98.3 8.6E-06 1.9E-10 88.0 13.9 222 381-613 41-270 (290)
55 KOG0495 HAT repeat protein [RN 98.3 0.0014 3E-08 75.3 31.3 252 387-641 452-718 (913)
56 KOG1155 Anaphase-promoting com 98.3 0.00024 5.3E-09 78.7 24.1 226 382-611 234-464 (559)
57 PF12854 PPR_1: PPR repeat 98.2 1.3E-06 2.8E-11 63.2 3.9 32 542-573 2-33 (34)
58 KOG1155 Anaphase-promoting com 98.2 0.00082 1.8E-08 74.6 26.4 193 412-609 332-537 (559)
59 COG3071 HemY Uncharacterized e 98.2 0.00064 1.4E-08 74.3 25.0 238 381-623 88-338 (400)
60 PRK11189 lipoprotein NlpI; Pro 98.1 0.00094 2E-08 72.4 25.2 197 381-584 70-275 (296)
61 PF12569 NARP1: NMDA receptor- 98.1 0.00057 1.2E-08 79.4 24.4 245 358-609 12-292 (517)
62 KOG2002 TPR-containing nuclear 98.1 0.00086 1.9E-08 80.1 25.8 273 337-615 439-752 (1018)
63 COG3063 PilF Tfp pilus assembl 98.1 0.0011 2.4E-08 67.9 23.0 190 419-612 44-240 (250)
64 TIGR00756 PPR pentatricopeptid 98.0 6.6E-06 1.4E-10 58.5 4.4 35 477-511 1-35 (35)
65 KOG2003 TPR repeat-containing 98.0 0.00047 1E-08 75.8 20.2 214 388-608 503-722 (840)
66 KOG1174 Anaphase-promoting com 98.0 0.0012 2.7E-08 72.3 23.2 264 343-612 225-504 (564)
67 KOG0495 HAT repeat protein [RN 98.0 0.004 8.7E-08 71.7 28.1 223 382-612 625-850 (913)
68 KOG1915 Cell cycle control pro 97.9 0.013 2.9E-07 65.4 29.6 317 286-615 49-473 (677)
69 KOG3616 Selective LIM binding 97.9 0.00046 1E-08 79.4 18.0 109 381-500 738-848 (1636)
70 cd05804 StaR_like StaR_like; a 97.9 0.0078 1.7E-07 66.2 27.8 222 383-608 51-293 (355)
71 COG3063 PilF Tfp pilus assembl 97.9 0.0023 5E-08 65.7 21.0 192 377-573 37-233 (250)
72 TIGR03302 OM_YfiO outer membra 97.9 0.0018 3.8E-08 67.2 21.0 176 378-573 36-229 (235)
73 KOG1070 rRNA processing protei 97.9 0.0013 2.8E-08 80.9 21.6 197 409-609 1457-1664(1710)
74 PF12569 NARP1: NMDA receptor- 97.8 0.0033 7.2E-08 73.1 24.1 225 382-612 11-261 (517)
75 PF13812 PPR_3: Pentatricopept 97.8 2.5E-05 5.4E-10 55.6 4.2 34 476-509 1-34 (34)
76 KOG1070 rRNA processing protei 97.8 0.0033 7.1E-08 77.5 24.1 218 381-605 1464-1697(1710)
77 TIGR03302 OM_YfiO outer membra 97.8 0.0016 3.5E-08 67.4 19.1 181 409-610 32-234 (235)
78 PF04733 Coatomer_E: Coatomer 97.8 0.00064 1.4E-08 73.6 16.1 210 354-573 39-262 (290)
79 KOG2002 TPR-containing nuclear 97.8 0.01 2.2E-07 71.3 26.8 272 348-623 268-574 (1018)
80 KOG2076 RNA polymerase III tra 97.8 0.019 4E-07 68.6 28.9 264 340-604 196-508 (895)
81 cd05804 StaR_like StaR_like; a 97.8 0.015 3.2E-07 64.0 27.1 246 358-607 51-335 (355)
82 KOG1125 TPR repeat-containing 97.7 0.002 4.3E-08 73.4 19.4 239 420-678 295-556 (579)
83 KOG1129 TPR repeat-containing 97.7 0.00042 9.1E-09 73.8 13.0 202 414-620 227-436 (478)
84 KOG1173 Anaphase-promoting com 97.7 0.0038 8.1E-08 71.1 21.0 233 381-622 250-498 (611)
85 PLN02789 farnesyltranstransfer 97.6 0.028 6E-07 61.8 26.6 222 384-611 46-305 (320)
86 PRK15179 Vi polysaccharide bio 97.6 0.013 2.8E-07 70.6 25.9 213 347-573 25-242 (694)
87 PF01535 PPR: PPR repeat; Int 97.6 6.3E-05 1.4E-09 52.2 3.3 31 477-507 1-31 (31)
88 KOG1128 Uncharacterized conser 97.6 0.0034 7.3E-08 73.3 18.5 216 345-573 393-613 (777)
89 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0028 6.1E-08 71.2 17.2 128 447-578 171-299 (395)
90 KOG1174 Anaphase-promoting com 97.5 0.069 1.5E-06 59.1 26.5 222 381-612 238-471 (564)
91 KOG3616 Selective LIM binding 97.5 0.0027 5.9E-08 73.3 16.0 130 453-600 740-871 (1636)
92 KOG1128 Uncharacterized conser 97.5 0.0022 4.7E-08 74.8 15.5 212 380-609 403-617 (777)
93 KOG3081 Vesicle coat complex C 97.5 0.012 2.6E-07 61.7 19.1 176 431-613 94-276 (299)
94 KOG1173 Anaphase-promoting com 97.4 0.046 9.9E-07 62.6 24.7 261 348-613 242-523 (611)
95 PRK15179 Vi polysaccharide bio 97.4 0.022 4.8E-07 68.7 23.6 142 441-586 82-229 (694)
96 PRK10370 formate-dependent nit 97.4 0.0098 2.1E-07 60.7 17.9 115 423-539 52-172 (198)
97 KOG0547 Translocase of outer m 97.4 0.015 3.3E-07 65.3 20.0 196 422-623 338-547 (606)
98 KOG3617 WD40 and TPR repeat-co 97.4 0.01 2.2E-07 69.8 19.2 198 348-573 755-993 (1416)
99 TIGR00756 PPR pentatricopeptid 97.3 0.00031 6.7E-09 49.7 4.0 33 412-444 2-34 (35)
100 COG4783 Putative Zn-dependent 97.3 0.11 2.4E-06 58.7 25.5 235 382-635 209-454 (484)
101 KOG0547 Translocase of outer m 97.3 0.0079 1.7E-07 67.5 16.2 152 456-611 337-494 (606)
102 PF13812 PPR_3: Pentatricopept 97.3 0.00046 1E-08 48.9 4.6 33 411-443 2-34 (34)
103 PRK10370 formate-dependent nit 97.3 0.027 5.8E-07 57.5 19.2 144 357-505 23-173 (198)
104 PRK15359 type III secretion sy 97.3 0.0033 7.1E-08 60.8 11.8 102 516-619 29-132 (144)
105 PRK04841 transcriptional regul 97.2 0.094 2E-06 65.4 27.4 250 358-609 460-761 (903)
106 KOG3785 Uncharacterized conser 97.2 0.063 1.4E-06 58.2 21.7 94 517-612 399-494 (557)
107 PRK15359 type III secretion sy 97.1 0.01 2.2E-07 57.3 13.8 108 467-578 15-124 (144)
108 PF08579 RPM2: Mitochondrial r 97.1 0.0035 7.7E-08 57.6 9.6 77 381-457 31-116 (120)
109 KOG0624 dsRNA-activated protei 97.1 0.15 3.3E-06 55.2 22.7 224 384-613 115-375 (504)
110 KOG3617 WD40 and TPR repeat-co 97.1 0.026 5.6E-07 66.6 18.2 237 347-606 723-994 (1416)
111 TIGR02552 LcrH_SycD type III s 97.0 0.02 4.3E-07 53.7 14.4 100 413-515 20-122 (135)
112 COG4783 Putative Zn-dependent 97.0 0.077 1.7E-06 59.9 20.8 180 407-608 271-454 (484)
113 PRK14720 transcript cleavage f 97.0 0.057 1.2E-06 66.3 21.4 56 447-503 118-176 (906)
114 PRK04841 transcriptional regul 97.0 0.15 3.2E-06 63.6 26.1 225 384-608 461-720 (903)
115 KOG0985 Vesicle coat protein c 97.0 0.29 6.3E-06 59.4 26.0 199 381-600 1054-1270(1666)
116 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.013 2.8E-07 66.0 14.6 117 381-502 175-294 (395)
117 KOG1915 Cell cycle control pro 97.0 0.83 1.8E-05 51.7 28.0 204 380-586 327-547 (677)
118 PF05843 Suf: Suppressor of fo 97.0 0.02 4.3E-07 61.7 15.6 136 477-615 2-143 (280)
119 PRK14720 transcript cleavage f 96.9 0.11 2.3E-06 64.0 22.9 208 349-590 30-268 (906)
120 KOG1914 mRNA cleavage and poly 96.9 0.19 4E-06 57.5 22.9 181 391-573 347-536 (656)
121 KOG2047 mRNA splicing factor [ 96.9 0.29 6.3E-06 57.0 24.6 196 412-613 250-511 (835)
122 COG5010 TadD Flp pilus assembl 96.9 0.12 2.5E-06 54.3 19.7 153 414-571 70-226 (257)
123 PF08579 RPM2: Mitochondrial r 96.9 0.0088 1.9E-07 55.1 10.1 81 478-559 27-116 (120)
124 PF09976 TPR_21: Tetratricopep 96.8 0.059 1.3E-06 51.8 16.1 114 387-501 23-143 (145)
125 PF01535 PPR: PPR repeat; Int 96.8 0.0013 2.7E-08 45.5 3.1 27 447-473 2-28 (31)
126 COG5010 TadD Flp pilus assembl 96.8 0.064 1.4E-06 56.2 16.6 151 382-535 73-226 (257)
127 PF09976 TPR_21: Tetratricopep 96.7 0.033 7.1E-07 53.6 13.6 85 484-571 56-142 (145)
128 PF04840 Vps16_C: Vps16, C-ter 96.7 0.35 7.6E-06 53.1 23.0 104 479-600 180-283 (319)
129 PF06239 ECSIT: Evolutionarily 96.7 0.0094 2E-07 61.0 9.9 98 464-562 33-153 (228)
130 PLN02789 farnesyltranstransfer 96.7 0.26 5.6E-06 54.2 21.7 190 420-613 47-255 (320)
131 KOG3060 Uncharacterized conser 96.7 0.19 4.2E-06 52.6 19.1 161 448-613 55-225 (289)
132 PF10037 MRP-S27: Mitochondria 96.7 0.017 3.8E-07 65.4 12.7 128 397-524 50-186 (429)
133 KOG1125 TPR repeat-containing 96.7 0.043 9.4E-07 62.9 15.6 225 380-611 290-530 (579)
134 PF10037 MRP-S27: Mitochondria 96.6 0.022 4.9E-07 64.5 13.2 109 381-489 72-186 (429)
135 TIGR02795 tol_pal_ybgF tol-pal 96.6 0.031 6.8E-07 50.5 12.1 97 516-612 7-109 (119)
136 TIGR02552 LcrH_SycD type III s 96.6 0.03 6.6E-07 52.4 12.3 97 514-612 20-118 (135)
137 PF06239 ECSIT: Evolutionarily 96.6 0.045 9.8E-07 56.1 13.8 105 407-526 44-153 (228)
138 cd00189 TPR Tetratricopeptide 96.6 0.022 4.7E-07 47.4 10.0 84 451-535 6-92 (100)
139 KOG1156 N-terminal acetyltrans 96.6 1 2.2E-05 52.7 26.0 224 385-612 51-287 (700)
140 KOG3081 Vesicle coat complex C 96.6 0.1 2.2E-06 54.9 16.4 159 396-563 94-257 (299)
141 KOG4340 Uncharacterized conser 96.6 0.15 3.2E-06 54.4 17.6 79 459-539 126-206 (459)
142 cd00189 TPR Tetratricopeptide 96.5 0.019 4.1E-07 47.7 9.4 91 479-572 3-93 (100)
143 KOG1914 mRNA cleavage and poly 96.5 0.21 4.6E-06 57.1 19.8 166 426-596 347-527 (656)
144 PF05843 Suf: Suppressor of fo 96.5 0.037 8E-07 59.6 13.7 127 411-539 2-135 (280)
145 KOG2047 mRNA splicing factor [ 96.5 0.65 1.4E-05 54.2 23.3 256 347-608 135-454 (835)
146 KOG2053 Mitochondrial inherita 96.4 0.74 1.6E-05 55.6 24.1 222 381-612 15-259 (932)
147 KOG1538 Uncharacterized conser 96.4 0.23 4.9E-06 57.6 18.8 202 383-606 606-844 (1081)
148 KOG2376 Signal recognition par 96.3 0.26 5.6E-06 56.9 18.6 215 381-612 18-257 (652)
149 TIGR02795 tol_pal_ybgF tol-pal 96.2 0.11 2.3E-06 47.0 13.1 91 415-505 7-105 (119)
150 PF14938 SNAP: Soluble NSF att 96.2 0.18 3.9E-06 54.2 16.9 145 450-608 99-263 (282)
151 KOG2376 Signal recognition par 96.2 2.3 5E-05 49.4 25.8 175 327-507 24-255 (652)
152 PF14938 SNAP: Soluble NSF att 96.2 0.53 1.1E-05 50.7 20.4 128 447-574 116-264 (282)
153 KOG0985 Vesicle coat protein c 96.2 0.55 1.2E-05 57.1 21.4 234 329-592 1062-1326(1666)
154 PF13281 DUF4071: Domain of un 96.1 0.34 7.3E-06 54.1 18.2 161 450-613 146-339 (374)
155 KOG1156 N-terminal acetyltrans 96.0 0.54 1.2E-05 54.9 19.9 224 387-614 19-254 (700)
156 KOG4340 Uncharacterized conser 96.0 0.56 1.2E-05 50.2 18.5 244 349-601 43-332 (459)
157 PRK10153 DNA-binding transcrip 96.0 0.17 3.7E-06 59.3 16.4 140 474-615 335-489 (517)
158 PF04840 Vps16_C: Vps16, C-ter 95.9 1.2 2.5E-05 49.1 21.5 113 512-634 178-290 (319)
159 KOG3060 Uncharacterized conser 95.9 2.2 4.8E-05 45.0 21.8 185 387-577 24-222 (289)
160 PF12688 TPR_5: Tetratrico pep 95.9 0.28 6E-06 46.1 14.0 107 381-487 7-117 (120)
161 PLN03088 SGT1, suppressor of 95.8 0.11 2.4E-06 57.9 13.5 87 383-471 10-96 (356)
162 PRK02603 photosystem I assembl 95.8 0.5 1.1E-05 46.7 16.5 124 381-526 41-166 (172)
163 PF12895 Apc3: Anaphase-promot 95.7 0.045 9.8E-07 47.4 7.7 9 489-497 71-79 (84)
164 PRK10866 outer membrane biogen 95.6 1.9 4.2E-05 45.4 20.9 59 381-439 38-98 (243)
165 COG3898 Uncharacterized membra 95.6 2.1 4.5E-05 47.6 21.1 27 478-504 190-216 (531)
166 PLN03088 SGT1, suppressor of 95.6 0.082 1.8E-06 59.0 11.1 100 483-586 9-110 (356)
167 PRK15363 pathogenicity island 95.6 0.45 9.8E-06 46.7 14.7 115 355-472 12-130 (157)
168 KOG1920 IkappaB kinase complex 95.5 0.86 1.9E-05 56.6 19.9 24 380-403 795-820 (1265)
169 KOG4162 Predicted calmodulin-b 95.5 3.8 8.2E-05 49.1 24.5 171 440-612 318-546 (799)
170 PRK02603 photosystem I assembl 95.5 0.37 8E-06 47.7 14.5 127 410-562 35-166 (172)
171 PF03704 BTAD: Bacterial trans 95.5 0.19 4.1E-06 48.1 12.0 54 449-502 66-122 (146)
172 PF12921 ATP13: Mitochondrial 95.4 0.11 2.4E-06 49.2 9.8 52 506-557 47-98 (126)
173 KOG0548 Molecular co-chaperone 95.4 1.5 3.2E-05 50.4 20.0 222 380-613 229-460 (539)
174 COG0457 NrfG FOG: TPR repeat [ 95.4 2.7 5.8E-05 40.1 24.7 220 388-611 36-268 (291)
175 PF12895 Apc3: Anaphase-promot 95.3 0.028 6.1E-07 48.7 5.0 81 388-470 2-83 (84)
176 CHL00033 ycf3 photosystem I as 95.3 0.47 1E-05 46.6 14.2 75 381-456 41-117 (168)
177 CHL00033 ycf3 photosystem I as 95.2 0.28 6.1E-06 48.2 12.4 61 478-538 37-99 (168)
178 KOG4162 Predicted calmodulin-b 95.1 3.7 8.1E-05 49.1 22.6 199 342-542 315-544 (799)
179 PRK10153 DNA-binding transcrip 95.1 0.91 2E-05 53.3 17.9 35 405-439 332-371 (517)
180 PF13432 TPR_16: Tetratricopep 95.0 0.097 2.1E-06 42.7 7.1 61 553-613 3-65 (65)
181 PF12921 ATP13: Mitochondrial 95.0 0.18 3.9E-06 47.8 9.7 54 541-594 46-103 (126)
182 KOG3941 Intermediate in Toll s 95.0 0.12 2.6E-06 54.8 9.0 111 462-573 51-185 (406)
183 COG3898 Uncharacterized membra 94.9 6.6 0.00014 43.8 22.5 216 386-612 131-362 (531)
184 KOG2796 Uncharacterized conser 94.9 0.77 1.7E-05 48.4 14.6 122 383-504 185-314 (366)
185 PF12688 TPR_5: Tetratrico pep 94.7 0.55 1.2E-05 44.1 12.1 108 482-590 7-117 (120)
186 KOG1538 Uncharacterized conser 94.7 2.3 4.9E-05 49.8 18.9 193 339-573 624-843 (1081)
187 KOG3785 Uncharacterized conser 94.7 0.56 1.2E-05 51.2 13.4 194 381-582 291-497 (557)
188 PF14559 TPR_19: Tetratricopep 94.7 0.19 4.1E-06 41.2 8.1 50 422-472 3-52 (68)
189 PF14559 TPR_19: Tetratricopep 94.7 0.12 2.6E-06 42.4 6.8 61 523-585 3-64 (68)
190 KOG1127 TPR repeat-containing 94.4 1.6 3.4E-05 53.5 17.6 186 382-572 499-696 (1238)
191 COG5107 RNA14 Pre-mRNA 3'-end 94.3 1.1 2.3E-05 50.5 14.8 139 447-590 399-546 (660)
192 KOG0624 dsRNA-activated protei 94.3 10 0.00022 41.6 26.3 192 379-580 42-257 (504)
193 KOG2053 Mitochondrial inherita 94.3 4.8 0.0001 49.0 21.1 185 385-573 53-252 (932)
194 PRK15363 pathogenicity island 94.1 0.68 1.5E-05 45.5 11.7 87 454-541 44-133 (157)
195 PRK10866 outer membrane biogen 94.1 3.4 7.3E-05 43.6 18.0 168 418-606 40-239 (243)
196 PF03704 BTAD: Bacterial trans 94.0 1.1 2.3E-05 42.9 12.8 127 409-549 2-138 (146)
197 PF13432 TPR_16: Tetratricopep 93.8 0.2 4.4E-06 40.8 6.4 51 454-504 6-59 (65)
198 KOG1127 TPR repeat-containing 93.7 8.7 0.00019 47.4 21.8 124 412-537 494-622 (1238)
199 KOG2796 Uncharacterized conser 93.5 2.2 4.7E-05 45.2 14.5 164 448-612 139-319 (366)
200 COG5107 RNA14 Pre-mRNA 3'-end 93.3 3.4 7.4E-05 46.7 16.5 135 474-612 395-535 (660)
201 smart00299 CLH Clathrin heavy 93.3 3.5 7.6E-05 39.1 15.0 66 512-590 70-136 (140)
202 PF13525 YfiO: Outer membrane 93.2 6.2 0.00013 40.2 17.5 59 381-439 11-71 (203)
203 KOG0553 TPR repeat-containing 93.1 0.35 7.6E-06 51.8 8.3 89 522-613 92-183 (304)
204 KOG0550 Molecular chaperone (D 92.9 4.8 0.0001 45.2 16.8 142 485-632 178-347 (486)
205 PF13414 TPR_11: TPR repeat; P 92.9 0.21 4.5E-06 41.1 5.1 63 548-610 4-69 (69)
206 KOG2066 Vacuolar assembly/sort 92.6 4.9 0.00011 48.2 17.4 148 317-474 358-534 (846)
207 KOG0553 TPR repeat-containing 92.6 1.3 2.8E-05 47.6 11.7 97 420-519 91-190 (304)
208 PF07079 DUF1347: Protein of u 92.5 19 0.0004 41.1 20.8 35 579-613 298-332 (549)
209 KOG0548 Molecular co-chaperone 92.3 2.9 6.4E-05 48.1 14.7 196 413-623 227-436 (539)
210 smart00299 CLH Clathrin heavy 92.2 5 0.00011 38.0 14.5 41 381-422 13-53 (140)
211 PF13525 YfiO: Outer membrane 92.1 11 0.00024 38.3 17.8 168 418-599 13-198 (203)
212 COG4700 Uncharacterized protei 92.1 15 0.00033 37.3 18.7 126 474-599 87-213 (251)
213 KOG2041 WD40 repeat protein [G 91.9 12 0.00025 44.6 18.9 61 548-608 1022-1086(1189)
214 PF13424 TPR_12: Tetratricopep 91.9 0.53 1.1E-05 39.8 6.5 24 447-470 7-30 (78)
215 KOG2280 Vacuolar assembly/sort 91.9 10 0.00022 45.5 18.7 99 483-598 691-789 (829)
216 PF13371 TPR_9: Tetratricopept 91.8 0.47 1E-05 39.4 6.1 60 555-614 3-64 (73)
217 PRK10803 tol-pal system protei 91.5 1.6 3.4E-05 46.7 11.1 25 588-612 226-250 (263)
218 PF13170 DUF4003: Protein of u 91.5 13 0.00029 40.5 18.3 125 426-553 78-223 (297)
219 COG4700 Uncharacterized protei 91.4 18 0.00039 36.8 20.2 120 443-567 87-213 (251)
220 PF10300 DUF3808: Protein of u 91.4 12 0.00026 43.4 19.0 125 379-505 192-334 (468)
221 PRK10803 tol-pal system protei 91.0 2.9 6.4E-05 44.7 12.6 96 476-573 143-243 (263)
222 PF13414 TPR_11: TPR repeat; P 91.0 0.93 2E-05 37.2 7.0 27 478-504 5-31 (69)
223 PF13170 DUF4003: Protein of u 90.8 6.5 0.00014 42.9 15.1 135 381-517 63-223 (297)
224 KOG2041 WD40 repeat protein [G 90.6 4.4 9.5E-05 48.0 13.9 181 407-602 689-901 (1189)
225 PF04053 Coatomer_WDAD: Coatom 90.5 5.1 0.00011 46.2 14.6 132 413-574 298-429 (443)
226 COG4105 ComL DNA uptake lipopr 90.4 20 0.00043 38.0 17.5 61 553-613 173-238 (254)
227 PF13281 DUF4071: Domain of un 90.1 28 0.00061 39.1 19.5 181 374-578 140-337 (374)
228 PF13424 TPR_12: Tetratricopep 89.8 0.74 1.6E-05 38.8 5.5 62 477-538 6-73 (78)
229 PLN03098 LPA1 LOW PSII ACCUMUL 89.6 6.7 0.00014 44.8 14.2 63 443-505 73-141 (453)
230 KOG2114 Vacuolar assembly/sort 89.5 20 0.00044 43.6 18.5 177 376-575 335-518 (933)
231 PF04184 ST7: ST7 protein; In 89.4 27 0.00058 40.4 18.7 56 381-439 174-229 (539)
232 PF08631 SPO22: Meiosis protei 89.1 36 0.00077 36.5 22.3 101 411-512 85-193 (278)
233 PF13371 TPR_9: Tetratricopept 89.0 1.7 3.8E-05 35.9 7.1 51 454-504 4-57 (73)
234 KOG2114 Vacuolar assembly/sort 89.0 5.8 0.00013 48.0 13.6 140 354-501 338-488 (933)
235 COG0457 NrfG FOG: TPR repeat [ 88.8 21 0.00046 33.7 24.2 187 423-611 36-234 (291)
236 KOG3941 Intermediate in Toll s 88.6 2.3 4.9E-05 45.5 8.9 85 388-472 85-186 (406)
237 PLN03098 LPA1 LOW PSII ACCUMUL 87.9 5.2 0.00011 45.6 12.0 63 409-473 74-140 (453)
238 PF07035 Mic1: Colon cancer-as 87.7 31 0.00068 34.4 16.0 121 475-607 28-148 (167)
239 COG3629 DnrI DNA-binding trans 87.7 3.8 8.3E-05 44.1 10.3 75 446-520 154-236 (280)
240 PF04053 Coatomer_WDAD: Coatom 87.6 17 0.00037 41.9 16.2 98 421-535 329-426 (443)
241 PF10300 DUF3808: Protein of u 87.3 25 0.00055 40.8 17.6 158 344-503 198-374 (468)
242 PF13428 TPR_14: Tetratricopep 86.8 1.7 3.6E-05 32.8 5.1 39 580-618 2-40 (44)
243 PRK09687 putative lyase; Provi 86.7 50 0.0011 35.6 26.4 141 381-526 74-221 (280)
244 COG3118 Thioredoxin domain-con 85.7 58 0.0013 35.4 18.2 121 418-542 142-268 (304)
245 PRK15331 chaperone protein Sic 85.2 16 0.00035 36.3 12.3 116 355-473 15-133 (165)
246 KOG2610 Uncharacterized conser 85.2 53 0.0011 36.3 17.0 151 385-536 113-272 (491)
247 PF04184 ST7: ST7 protein; In 84.9 49 0.0011 38.4 17.5 123 387-521 212-341 (539)
248 PF13929 mRNA_stabil: mRNA sta 84.7 20 0.00044 38.6 13.7 110 490-599 142-258 (292)
249 COG3118 Thioredoxin domain-con 84.5 44 0.00095 36.3 16.1 117 453-573 142-262 (304)
250 PF07035 Mic1: Colon cancer-as 84.2 39 0.00084 33.7 14.6 133 395-537 14-146 (167)
251 COG4235 Cytochrome c biogenesi 83.8 12 0.00026 40.4 11.6 95 443-539 154-255 (287)
252 PF09205 DUF1955: Domain of un 83.5 13 0.00028 35.7 10.3 60 381-441 92-151 (161)
253 PF13512 TPR_18: Tetratricopep 83.4 7 0.00015 37.8 8.8 48 458-505 23-76 (142)
254 KOG1920 IkappaB kinase complex 82.4 17 0.00038 45.7 13.5 25 347-372 788-814 (1265)
255 COG1729 Uncharacterized protei 82.3 9.8 0.00021 40.5 10.2 94 479-573 145-241 (262)
256 KOG2280 Vacuolar assembly/sort 82.2 1.3E+02 0.0028 36.6 20.2 107 512-627 685-791 (829)
257 COG1747 Uncharacterized N-term 81.8 1.1E+02 0.0024 35.7 18.7 169 364-539 55-233 (711)
258 COG2909 MalT ATP-dependent tra 81.8 1.4E+02 0.0031 36.9 22.9 189 384-573 424-644 (894)
259 PF09205 DUF1955: Domain of un 81.7 52 0.0011 31.8 13.5 67 475-543 85-151 (161)
260 KOG1130 Predicted G-alpha GTPa 81.5 5.4 0.00012 44.7 8.1 51 383-434 25-79 (639)
261 COG4235 Cytochrome c biogenesi 80.0 15 0.00032 39.7 10.7 108 475-587 155-268 (287)
262 PF13512 TPR_18: Tetratricopep 78.8 22 0.00048 34.4 10.5 16 597-612 117-132 (142)
263 PF13929 mRNA_stabil: mRNA sta 78.0 32 0.0007 37.2 12.4 115 387-501 140-263 (292)
264 KOG4555 TPR repeat-containing 77.9 27 0.00059 33.5 10.4 88 383-471 51-141 (175)
265 KOG1941 Acetylcholine receptor 77.1 91 0.002 34.9 15.5 96 477-572 163-271 (518)
266 PF10602 RPN7: 26S proteasome 76.9 19 0.00041 36.1 9.9 57 447-503 38-100 (177)
267 PF00637 Clathrin: Region in C 76.6 3.1 6.7E-05 39.5 4.0 126 450-595 12-141 (143)
268 COG3629 DnrI DNA-binding trans 76.0 18 0.00039 39.0 9.9 74 476-550 153-230 (280)
269 PF10602 RPN7: 26S proteasome 75.7 34 0.00074 34.2 11.4 95 477-573 37-139 (177)
270 PF02284 COX5A: Cytochrome c o 75.6 15 0.00032 33.6 7.6 70 494-574 28-97 (108)
271 KOG4570 Uncharacterized conser 75.3 20 0.00044 39.0 9.9 96 440-539 59-163 (418)
272 cd00923 Cyt_c_Oxidase_Va Cytoc 75.1 13 0.00029 33.6 7.2 74 491-575 22-95 (103)
273 COG1729 Uncharacterized protei 74.6 34 0.00074 36.5 11.4 100 513-613 144-249 (262)
274 PF14669 Asp_Glu_race_2: Putat 74.5 97 0.0021 31.7 13.8 24 515-538 136-159 (233)
275 PRK11906 transcriptional regul 73.4 1.1E+02 0.0024 35.4 15.7 112 390-502 273-398 (458)
276 KOG1941 Acetylcholine receptor 73.2 85 0.0018 35.1 14.0 219 388-606 19-273 (518)
277 PRK11906 transcriptional regul 73.2 1.1E+02 0.0023 35.4 15.6 156 411-572 252-432 (458)
278 KOG0543 FKBP-type peptidyl-pro 73.1 46 0.001 37.5 12.4 93 445-539 257-354 (397)
279 PRK15331 chaperone protein Sic 72.8 73 0.0016 31.7 12.5 82 457-539 49-133 (165)
280 KOG1586 Protein required for f 72.5 1.4E+02 0.0029 31.7 15.8 55 558-612 165-228 (288)
281 PF00515 TPR_1: Tetratricopept 72.3 7 0.00015 27.2 4.0 32 580-611 2-33 (34)
282 PF00637 Clathrin: Region in C 71.7 1.2 2.6E-05 42.3 -0.2 82 417-501 14-95 (143)
283 PF07719 TPR_2: Tetratricopept 71.1 10 0.00023 26.0 4.7 33 580-612 2-34 (34)
284 PF13762 MNE1: Mitochondrial s 69.9 1E+02 0.0022 30.1 12.5 52 475-526 78-130 (145)
285 PF13176 TPR_7: Tetratricopept 69.1 9.3 0.0002 27.4 4.1 24 479-502 2-25 (36)
286 PF09613 HrpB1_HrpK: Bacterial 69.0 72 0.0016 31.6 11.5 47 522-573 21-70 (160)
287 PHA02875 ankyrin repeat protei 68.3 52 0.0011 37.0 12.1 193 385-597 9-217 (413)
288 KOG1130 Predicted G-alpha GTPa 67.3 79 0.0017 35.9 12.4 131 478-608 197-344 (639)
289 TIGR02270 conserved hypothetic 66.0 2.5E+02 0.0053 32.2 21.9 101 381-489 44-144 (410)
290 KOG0543 FKBP-type peptidyl-pro 65.9 59 0.0013 36.6 11.4 19 454-472 217-235 (397)
291 TIGR02561 HrpB1_HrpK type III 65.4 1.1E+02 0.0025 29.9 11.8 36 456-491 55-91 (153)
292 PRK12798 chemotaxis protein; R 65.2 2.5E+02 0.0055 32.0 18.7 152 458-611 125-289 (421)
293 PF11838 ERAP1_C: ERAP1-like C 65.0 2E+02 0.0044 30.9 18.4 78 492-573 146-227 (324)
294 PF09613 HrpB1_HrpK: Bacterial 64.8 1.5E+02 0.0032 29.4 12.7 48 422-473 22-72 (160)
295 COG4649 Uncharacterized protei 64.2 1.7E+02 0.0037 29.7 14.7 121 385-505 68-196 (221)
296 KOG0276 Vesicle coat complex C 64.2 65 0.0014 38.2 11.4 43 457-501 649-691 (794)
297 PF02284 COX5A: Cytochrome c o 63.7 35 0.00075 31.3 7.4 58 394-453 29-87 (108)
298 PF11768 DUF3312: Protein of u 63.6 60 0.0013 38.1 11.2 127 449-599 412-543 (545)
299 KOG4555 TPR repeat-containing 63.5 1.1E+02 0.0023 29.6 10.9 87 419-506 52-145 (175)
300 cd00923 Cyt_c_Oxidase_Va Cytoc 63.1 40 0.00087 30.6 7.6 59 393-453 25-84 (103)
301 COG4649 Uncharacterized protei 61.8 76 0.0017 32.0 10.0 16 590-605 178-193 (221)
302 COG3947 Response regulator con 61.0 2.5E+02 0.0055 30.7 14.4 71 479-550 282-356 (361)
303 KOG4570 Uncharacterized conser 59.5 30 0.00065 37.8 7.3 48 425-472 115-162 (418)
304 PF13176 TPR_7: Tetratricopept 59.4 15 0.00032 26.4 3.7 26 447-472 1-26 (36)
305 PF13428 TPR_14: Tetratricopep 58.8 24 0.00051 26.4 4.9 26 479-504 4-29 (44)
306 PF04190 DUF410: Protein of un 58.3 2.6E+02 0.0055 29.8 19.7 159 362-540 2-170 (260)
307 PF13374 TPR_10: Tetratricopep 58.3 21 0.00045 25.6 4.4 26 478-503 4-29 (42)
308 TIGR02508 type_III_yscG type I 57.5 98 0.0021 28.4 9.1 87 426-516 21-107 (115)
309 KOG1464 COP9 signalosome, subu 57.1 2E+02 0.0042 31.1 12.6 212 375-593 65-318 (440)
310 PF02259 FAT: FAT domain; Int 56.8 2.8E+02 0.0062 29.9 17.5 62 546-607 145-212 (352)
311 KOG0550 Molecular chaperone (D 56.4 97 0.0021 35.2 10.8 153 453-611 177-353 (486)
312 PF14853 Fis1_TPR_C: Fis1 C-te 55.7 15 0.00033 29.3 3.4 32 584-615 6-37 (53)
313 PF13181 TPR_8: Tetratricopept 55.3 20 0.00043 24.8 3.7 31 581-611 3-33 (34)
314 PHA02875 ankyrin repeat protei 55.0 61 0.0013 36.5 9.6 16 335-350 15-30 (413)
315 KOG2044 5'-3' exonuclease HKE1 54.5 64 0.0014 39.3 9.6 11 14-24 645-655 (931)
316 TIGR02561 HrpB1_HrpK type III 54.2 1.2E+02 0.0026 29.7 9.9 46 523-573 22-70 (153)
317 PF11207 DUF2989: Protein of u 53.8 90 0.0019 32.1 9.4 74 421-496 118-198 (203)
318 COG4105 ComL DNA uptake lipopr 53.7 3.1E+02 0.0066 29.3 23.1 75 381-456 40-117 (254)
319 KOG2396 HAT (Half-A-TPR) repea 53.5 4.3E+02 0.0092 31.0 15.4 209 390-611 336-563 (568)
320 PF13762 MNE1: Mitochondrial s 53.1 1.7E+02 0.0037 28.5 10.8 50 409-458 78-128 (145)
321 PRK13800 putative oxidoreducta 52.7 5.9E+02 0.013 32.3 19.5 183 394-596 622-806 (897)
322 KOG0687 26S proteasome regulat 52.6 1.7E+02 0.0038 32.3 11.7 108 460-587 37-151 (393)
323 PF00515 TPR_1: Tetratricopept 52.6 29 0.00062 24.0 4.2 27 478-504 3-29 (34)
324 KOG0292 Vesicle coat complex C 51.1 33 0.00071 42.1 6.5 104 517-638 626-729 (1202)
325 PRK15180 Vi polysaccharide bio 50.5 82 0.0018 36.3 9.2 121 487-612 300-424 (831)
326 COG4455 ImpE Protein of avirul 50.4 66 0.0014 33.6 7.8 76 478-555 3-80 (273)
327 PF13374 TPR_10: Tetratricopep 49.9 27 0.0006 24.9 3.9 28 445-472 2-29 (42)
328 KOG2610 Uncharacterized conser 49.8 1.7E+02 0.0037 32.5 11.1 153 457-613 115-283 (491)
329 COG1747 Uncharacterized N-term 49.3 5.1E+02 0.011 30.6 20.7 175 408-589 64-249 (711)
330 KOG3807 Predicted membrane pro 49.2 1.4E+02 0.003 33.0 10.3 103 422-537 228-337 (556)
331 COG2909 MalT ATP-dependent tra 49.0 6.4E+02 0.014 31.6 22.3 225 381-608 366-647 (894)
332 PF04097 Nic96: Nup93/Nic96; 48.2 4.9E+02 0.011 31.4 16.2 31 547-577 500-535 (613)
333 cd08819 CARD_MDA5_2 Caspase ac 47.6 90 0.0019 27.8 7.2 66 429-496 21-86 (88)
334 PF07163 Pex26: Pex26 protein; 47.6 1.6E+02 0.0034 32.0 10.3 85 382-468 90-181 (309)
335 PF08631 SPO22: Meiosis protei 47.5 3.8E+02 0.0083 28.6 26.0 159 386-547 4-192 (278)
336 COG5159 RPN6 26S proteasome re 47.3 2.5E+02 0.0054 30.6 11.6 136 379-514 7-167 (421)
337 KOG0276 Vesicle coat complex C 46.2 2.4E+02 0.0052 33.7 12.2 130 447-603 616-745 (794)
338 KOG1550 Extracellular protein 46.0 4.8E+02 0.01 31.0 15.5 85 385-473 259-356 (552)
339 KOG2396 HAT (Half-A-TPR) repea 45.6 5.7E+02 0.012 30.1 18.0 177 425-608 336-525 (568)
340 PF10366 Vps39_1: Vacuolar sor 45.1 1.4E+02 0.0031 27.4 8.5 27 478-504 41-67 (108)
341 PF07079 DUF1347: Protein of u 44.9 5.6E+02 0.012 29.8 22.1 250 327-580 18-332 (549)
342 PF08424 NRDE-2: NRDE-2, neces 44.9 4.6E+02 0.0099 28.8 14.4 77 392-470 48-127 (321)
343 PRK13342 recombination factor 44.8 5.2E+02 0.011 29.4 18.5 115 392-524 154-278 (413)
344 KOG2297 Predicted translation 44.4 2.7E+02 0.0058 30.6 11.4 75 522-598 266-340 (412)
345 PF04190 DUF410: Protein of un 44.3 4.2E+02 0.0091 28.2 15.7 153 386-573 1-167 (260)
346 KOG0403 Neoplastic transformat 43.9 4.4E+02 0.0094 30.5 13.4 140 381-537 220-371 (645)
347 KOG2044 5'-3' exonuclease HKE1 43.5 1.8E+02 0.0039 35.7 10.9 9 86-94 762-770 (931)
348 KOG4279 Serine/threonine prote 42.7 1.3E+02 0.0027 36.7 9.4 29 585-613 372-400 (1226)
349 PF02259 FAT: FAT domain; Int 42.0 4.7E+02 0.01 28.1 21.4 60 512-572 147-209 (352)
350 PRK09687 putative lyase; Provi 41.7 4.8E+02 0.01 28.1 28.2 213 381-611 43-266 (280)
351 smart00638 LPD_N Lipoprotein N 41.5 6.7E+02 0.014 29.7 23.8 29 410-438 340-368 (574)
352 PF11207 DUF2989: Protein of u 41.0 1.5E+02 0.0032 30.6 8.6 72 494-566 124-197 (203)
353 KOG1585 Protein required for f 40.8 4.9E+02 0.011 27.9 15.9 23 479-501 94-116 (308)
354 PF13934 ELYS: Nuclear pore co 40.7 4.4E+02 0.0096 27.4 12.5 106 478-593 78-186 (226)
355 PF11838 ERAP1_C: ERAP1-like C 39.5 5.1E+02 0.011 27.7 15.2 107 426-534 146-260 (324)
356 KOG1586 Protein required for f 39.4 4.3E+02 0.0093 28.1 11.7 16 490-505 168-183 (288)
357 KOG1550 Extracellular protein 39.3 6.2E+02 0.013 30.1 15.0 145 391-540 228-393 (552)
358 PF07721 TPR_4: Tetratricopept 38.1 51 0.0011 21.8 3.4 20 450-469 6-25 (26)
359 PF07163 Pex26: Pex26 protein; 38.0 2.5E+02 0.0055 30.5 10.0 88 483-571 90-182 (309)
360 PF14669 Asp_Glu_race_2: Putat 37.6 4.8E+02 0.01 26.9 13.5 174 404-603 2-205 (233)
361 PF13431 TPR_17: Tetratricopep 37.6 45 0.00098 23.7 3.2 22 444-465 12-33 (34)
362 PF07719 TPR_2: Tetratricopept 37.4 69 0.0015 21.7 4.2 26 479-504 4-29 (34)
363 TIGR02508 type_III_yscG type I 36.8 1.6E+02 0.0034 27.1 7.1 50 484-539 47-96 (115)
364 PF11848 DUF3368: Domain of un 36.1 1E+02 0.0022 23.9 5.3 38 381-418 8-45 (48)
365 PF10345 Cohesin_load: Cohesin 36.1 8.4E+02 0.018 29.3 20.2 53 382-434 368-428 (608)
366 COG4455 ImpE Protein of avirul 36.1 1.9E+02 0.0042 30.3 8.5 52 417-469 8-59 (273)
367 smart00028 TPR Tetratricopepti 35.6 70 0.0015 19.9 3.9 30 581-610 3-32 (34)
368 KOG1258 mRNA processing protei 35.1 8.5E+02 0.018 29.1 18.0 23 349-371 296-318 (577)
369 KOG4648 Uncharacterized conser 34.5 79 0.0017 35.1 5.8 45 485-531 106-151 (536)
370 PF12069 DUF3549: Protein of u 34.1 7E+02 0.015 27.8 14.3 132 449-587 170-306 (340)
371 KOG1498 26S proteasome regulat 34.0 7.6E+02 0.016 28.2 13.5 194 342-556 44-257 (439)
372 KOG4077 Cytochrome c oxidase, 34.0 1.7E+02 0.0036 28.1 7.1 71 494-575 67-137 (149)
373 KOG2582 COP9 signalosome, subu 33.5 7.2E+02 0.016 28.1 12.9 156 381-540 146-345 (422)
374 COG3947 Response regulator con 32.7 7E+02 0.015 27.4 16.3 68 513-582 281-356 (361)
375 KOG0991 Replication factor C, 32.6 6.4E+02 0.014 26.9 14.7 56 466-523 229-284 (333)
376 PF10345 Cohesin_load: Cohesin 32.5 9.4E+02 0.02 28.8 18.2 180 393-573 39-251 (608)
377 PF13174 TPR_6: Tetratricopept 32.5 79 0.0017 21.2 3.8 28 584-611 5-32 (33)
378 PRK15180 Vi polysaccharide bio 32.2 2.3E+02 0.005 32.9 9.1 114 422-538 301-418 (831)
379 PF13934 ELYS: Nuclear pore co 31.9 3.7E+02 0.008 28.0 10.3 122 449-580 80-205 (226)
380 PF11846 DUF3366: Domain of un 31.7 1.2E+02 0.0026 30.5 6.4 34 577-610 142-175 (193)
381 PF11846 DUF3366: Domain of un 31.4 1.8E+02 0.0039 29.1 7.7 30 442-471 141-170 (193)
382 COG2976 Uncharacterized protei 31.1 6.1E+02 0.013 26.2 14.0 132 476-613 54-193 (207)
383 PF09477 Type_III_YscG: Bacter 30.9 2.7E+02 0.0059 25.9 7.7 79 425-506 21-99 (116)
384 PF14689 SPOB_a: Sensor_kinase 30.9 1E+02 0.0023 25.2 4.8 29 475-503 22-50 (62)
385 PRK00423 tfb transcription ini 30.8 4.5E+02 0.0097 28.8 11.2 32 564-595 238-276 (310)
386 KOG1258 mRNA processing protei 30.7 1E+03 0.022 28.6 16.8 166 444-614 296-476 (577)
387 TIGR03504 FimV_Cterm FimV C-te 30.4 87 0.0019 24.0 3.9 20 418-437 7-26 (44)
388 KOG4648 Uncharacterized conser 30.4 52 0.0011 36.4 3.7 92 519-613 105-199 (536)
389 PF11663 Toxin_YhaV: Toxin wit 29.7 43 0.00094 32.2 2.6 34 385-420 105-138 (140)
390 KOG2034 Vacuolar sorting prote 29.4 1E+03 0.022 30.0 14.3 168 418-602 366-553 (911)
391 PF13181 TPR_8: Tetratricopept 29.4 1.1E+02 0.0025 20.7 4.2 26 478-503 3-28 (34)
392 KOG0686 COP9 signalosome, subu 29.1 9.3E+02 0.02 27.7 13.8 158 446-612 151-334 (466)
393 smart00638 LPD_N Lipoprotein N 28.9 1E+03 0.022 28.1 24.7 180 408-592 308-507 (574)
394 PF09670 Cas_Cas02710: CRISPR- 28.9 7.8E+02 0.017 27.8 13.0 21 384-404 140-160 (379)
395 PF11768 DUF3312: Protein of u 28.8 4.1E+02 0.0089 31.5 10.7 23 380-402 413-435 (545)
396 PF12926 MOZART2: Mitotic-spin 28.6 4E+02 0.0087 23.7 8.1 42 431-472 29-70 (88)
397 cd08326 CARD_CASP9 Caspase act 28.2 3.2E+02 0.007 23.9 7.7 62 430-495 19-80 (84)
398 KOG1114 Tripeptidyl peptidase 28.1 1.4E+03 0.029 29.3 16.2 125 457-599 1159-1287(1304)
399 PF11663 Toxin_YhaV: Toxin wit 28.0 56 0.0012 31.4 3.0 34 487-522 106-139 (140)
400 KOG4077 Cytochrome c oxidase, 27.6 2.8E+02 0.0061 26.6 7.4 45 395-439 69-113 (149)
401 PRK14958 DNA polymerase III su 27.3 6.7E+02 0.014 29.6 12.4 91 401-512 191-281 (509)
402 KOG2297 Predicted translation 27.0 5.5E+02 0.012 28.3 10.4 52 347-398 162-219 (412)
403 PF11848 DUF3368: Domain of un 27.0 1.8E+02 0.0039 22.6 5.2 33 487-519 13-45 (48)
404 PF07064 RIC1: RIC1; InterPro 26.4 8.1E+02 0.018 26.1 15.9 61 552-612 184-253 (258)
405 COG2178 Predicted RNA-binding 26.4 6.3E+02 0.014 26.0 10.2 50 455-504 39-97 (204)
406 PF11817 Foie-gras_1: Foie gra 26.1 4.4E+02 0.0095 27.7 9.8 53 380-432 183-240 (247)
407 PRK10564 maltose regulon perip 25.9 1.1E+02 0.0023 33.5 5.0 40 479-518 260-299 (303)
408 PF04097 Nic96: Nup93/Nic96; 25.9 4.1E+02 0.0089 32.1 10.6 210 355-574 85-354 (613)
409 TIGR02397 dnaX_nterm DNA polym 25.8 8.2E+02 0.018 26.6 12.4 27 482-509 250-276 (355)
410 PF01347 Vitellogenin_N: Lipop 25.8 1.2E+03 0.026 27.8 15.6 228 390-619 322-580 (618)
411 KOG0991 Replication factor C, 25.6 8.5E+02 0.018 26.1 11.7 118 451-573 136-264 (333)
412 PF08311 Mad3_BUB1_I: Mad3/BUB 25.5 4.5E+02 0.0098 24.6 8.8 43 428-470 81-124 (126)
413 KOG3677 RNA polymerase I-assoc 25.5 6.1E+02 0.013 29.1 10.8 205 381-589 207-426 (525)
414 COG2178 Predicted RNA-binding 25.1 5.7E+02 0.012 26.3 9.6 18 523-540 133-150 (204)
415 PF09670 Cas_Cas02710: CRISPR- 24.7 1E+03 0.022 26.9 12.9 56 419-475 140-199 (379)
416 cd08819 CARD_MDA5_2 Caspase ac 24.4 4.3E+02 0.0093 23.6 7.6 67 394-466 21-87 (88)
417 KOG1585 Protein required for f 24.2 9.1E+02 0.02 26.0 16.1 200 381-603 37-251 (308)
418 KOG0890 Protein kinase of the 24.0 2.2E+03 0.048 30.3 21.7 115 352-469 1422-1542(2382)
419 COG5108 RPO41 Mitochondrial DN 23.5 5E+02 0.011 31.5 10.0 47 415-461 33-81 (1117)
420 smart00544 MA3 Domain in DAP-5 23.5 5.4E+02 0.012 23.1 9.5 60 380-441 7-68 (113)
421 cd08332 CARD_CASP2 Caspase act 23.1 4.4E+02 0.0096 23.3 7.7 34 458-491 47-80 (90)
422 KOG2223 Uncharacterized conser 23.0 4.8E+02 0.01 30.0 9.4 58 334-400 458-518 (586)
423 PF06957 COPI_C: Coatomer (COP 23.0 1.8E+02 0.0038 33.4 6.3 34 579-612 300-333 (422)
424 PHA03100 ankyrin repeat protei 22.8 4.8E+02 0.01 29.7 10.2 222 335-572 48-305 (480)
425 PRK11619 lytic murein transgly 22.7 1.4E+03 0.031 27.7 26.3 55 551-605 316-372 (644)
426 TIGR03581 EF_0839 conserved hy 22.7 1.6E+02 0.0034 30.7 5.2 83 390-472 136-235 (236)
427 PRK13800 putative oxidoreducta 22.3 1.7E+03 0.036 28.3 27.2 139 443-592 726-865 (897)
428 KOG3636 Uncharacterized conser 22.0 3.8E+02 0.0082 30.9 8.3 134 352-487 94-271 (669)
429 TIGR03504 FimV_Cterm FimV C-te 21.8 1.4E+02 0.0031 22.9 3.7 26 380-405 4-29 (44)
430 TIGR02710 CRISPR-associated pr 21.7 9E+02 0.02 27.4 11.5 9 523-531 258-266 (380)
431 PHA03100 ankyrin repeat protei 21.5 5.3E+02 0.011 29.4 10.2 18 355-372 37-54 (480)
432 PRK13341 recombination factor 21.1 1.6E+03 0.035 27.7 18.5 108 405-526 192-308 (725)
433 PF15469 Sec5: Exocyst complex 21.0 8.1E+02 0.018 24.2 11.2 58 477-540 58-115 (182)
434 PF04090 RNA_pol_I_TF: RNA pol 21.0 5.7E+02 0.012 26.3 8.9 97 511-608 41-168 (199)
435 PRK14956 DNA polymerase III su 20.8 8.8E+02 0.019 28.5 11.5 91 402-512 194-284 (484)
436 cd07229 Pat_TGL3_like Triacylg 20.6 2.8E+02 0.006 31.6 7.2 38 397-434 101-141 (391)
437 KOG4567 GTPase-activating prot 20.4 7.7E+02 0.017 27.3 10.0 73 496-574 263-345 (370)
438 COG5210 GTPase-activating prot 20.3 5.5E+02 0.012 30.0 10.0 46 428-473 360-405 (496)
439 KOG2063 Vacuolar assembly/sort 20.2 1.8E+03 0.04 28.0 16.3 26 378-403 507-532 (877)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-85 Score=785.36 Aligned_cols=443 Identities=31% Similarity=0.567 Sum_probs=426.8
Q ss_pred HhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhh------ccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004114 331 YQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQN------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQ 404 (773)
Q Consensus 331 f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~ 404 (773)
......++..+.+.|+.+|..++++||++|+++|++++|.++|.. ..+..||.+|++.|++++|+++|++|.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 344466788889999999999999999999999999999998743 23446999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHH
Q 004114 405 CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMIT 484 (773)
Q Consensus 405 Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ 484 (773)
|+.||..||+++|.+|++.|.+++|+++|..|++.|+.||..+|++||++|+|+|++++|+++|++|.+||+++||+||.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHH
Q 004114 485 GFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564 (773)
Q Consensus 485 ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~ 564 (773)
+|+++|+.++|+++|++|.+.|+.||.+||++||.+|++.|++++|.++|+.|.+++|+.|+..+|++||++|+++|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc-------hHHHHcCCchh--hhhHHHHHhcc
Q 004114 565 EALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL-------NEKSKAGLVPV--NASELAKEKEN 635 (773)
Q Consensus 565 eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~-------~~y~~aG~~~~--~v~~lmk~~~l 635 (773)
+|.++|++|+++|+..+|++||.+|+.+|+++.|+.+++.+.+++|++. +.|...|+|.+ .+.+.|+++++
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999864 67999999975 45677999999
Q ss_pred cccccccEEEEcCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCcchheeccchhhHHHHHHHHHHHHHHHHcC
Q 004114 636 KKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGL 715 (773)
Q Consensus 636 ~k~~~~s~ie~~~~v~~f~~g~~~hp~~~ei~~~l~~L~~~Mke~G~~Pd~~~~l~~v~~~~k~~~l~~hse~LA~a~gl 715 (773)
++.|+++||++.+.+|.|.+|+.+||..++|+.++++|..+|++.||+||+.++++++++++|++.++.|||+||+||||
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l 639 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGL 639 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeeeechhccccccchhHHhhhccCceEEEecCCcccccCCcccCccCCC
Q 004114 716 LSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773 (773)
Q Consensus 716 i~~~~~~~i~ivknlr~cgdch~a~k~is~~~~r~iivrd~~r~h~f~~G~csc~d~w 773 (773)
+.++++.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus 640 ~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 640 INTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.7e-81 Score=765.42 Aligned_cols=441 Identities=32% Similarity=0.564 Sum_probs=423.9
Q ss_pred HHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhh------ccHHHHHHHHHHcCCHHHHHHHHHHH
Q 004114 328 RRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQN------NGTLEQLDGLVKEGKVKEAIEVLGLL 401 (773)
Q Consensus 328 ~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~------~~~~~LI~a~~~~G~~~eAl~lf~~M 401 (773)
.+.++.+.+++..+.+.|+.|+..++++||++|+++|++++|.++|.. ..+..||.+|++.|+.++|+++|++|
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456677888999999999999999999999999999999999998642 23446999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHH
Q 004114 402 EKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDT 481 (773)
Q Consensus 402 ~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~ 481 (773)
.. +++||..||+++|.+|++.|.++.++++|..|++.|+.+|..++++||++|+|+|++++|+++|++| .+|+++||+
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~ 559 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNI 559 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHH
Confidence 86 5999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCC
Q 004114 482 MITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561 (773)
Q Consensus 482 LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G 561 (773)
||.+|+++|+.++|+++|++|.+.|++||.+||++||.+|++.|++++|.++|+.|.+++|+.|+..||++||++|+++|
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999978899999999999999999999
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc-------hHHHHcCCchh--hhhHHHHH
Q 004114 562 YLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL-------NEKSKAGLVPV--NASELAKE 632 (773)
Q Consensus 562 ~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~-------~~y~~aG~~~~--~v~~lmk~ 632 (773)
++++|.+++++|+++||..+|++||.+|..+|+.+.|+.+++.+.+++|++. +.|+.+|+|.+ ++++.|++
T Consensus 640 ~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 640 KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999985 67899999984 57889999
Q ss_pred hcccccccccEEEEcCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCcchheeccchhhHHHHHHHHHHHHHHH
Q 004114 633 KENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVS 712 (773)
Q Consensus 633 ~~l~k~~~~s~ie~~~~v~~f~~g~~~hp~~~ei~~~l~~L~~~Mke~G~~Pd~~~~l~~v~~~~k~~~l~~hse~LA~a 712 (773)
++++|.|++|||++.+++|.|.+|+.+||..++||.+|++|..+|++.||+||+..++ ++++++|++.++.||||||+|
T Consensus 720 ~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a 798 (857)
T PLN03077 720 NGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIA 798 (857)
T ss_pred cCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888 557789999999999999999
Q ss_pred HcCccCCCCCceeeeechhccccccchhHHhhhccCceEEEecCCcccccCCcccCccC
Q 004114 713 HGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRD 771 (773)
Q Consensus 713 ~gli~~~~~~~i~ivknlr~cgdch~a~k~is~~~~r~iivrd~~r~h~f~~G~csc~d 771 (773)
|||+.++++.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|
T Consensus 799 ~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 799 FGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-45 Score=448.44 Aligned_cols=430 Identities=19% Similarity=0.246 Sum_probs=350.2
Q ss_pred HhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhc------cHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004114 331 YQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNN------GTLEQLDGLVKEGKVKEAIEVLGLLEKQ 404 (773)
Q Consensus 331 f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~------~~~~LI~a~~~~G~~~eAl~lf~~M~~~ 404 (773)
+....+++..+++.|+.||+.++++||++|+++|++++|.++|..+ .+..||.+|++.|++++|+++|++|.+.
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3455678889999999999999999999999999999999987533 3446999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHH
Q 004114 405 CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMIT 484 (773)
Q Consensus 405 Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ 484 (773)
|+.||..||+++|.+|++.|+++.|.++|..|++.|+.||..+|++||++|+++|++++|+++|++|.+||+++||+||.
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHH
Q 004114 485 GFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564 (773)
Q Consensus 485 ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~ 564 (773)
+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+. |+.|+..+|++||++|+++|+++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999876 99999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCc------hHHHHcCCchhh--hhHHHHHhcc
Q 004114 565 EALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL-DPSRL------NEKSKAGLVPVN--ASELAKEKEN 635 (773)
Q Consensus 565 eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el-~p~~~------~~y~~aG~~~~~--v~~lmk~~~l 635 (773)
+|.++|++|. ++|+++|++||.+|++.|+.++|..+++.|.+. .|+.. .+++..|.+... +...+...++
T Consensus 442 ~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 442 KALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 9999999997 689999999999999999999999999988643 45442 334444444211 1111111111
Q ss_pred cccccc--cEEE-----------------EcCEEEE---EEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCcchheecc
Q 004114 636 KKLASQ--NLLE-----------------VRSKVHE---YRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDI 693 (773)
Q Consensus 636 ~k~~~~--s~ie-----------------~~~~v~~---f~~g~~~hp~~~ei~~~l~~L~~~Mke~G~~Pd~~~~l~~v 693 (773)
...... ..|. ....+.. ...+...|...++ +.+++++|++.|+.||..++...+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~----A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSM----AVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCcccHHHHH
Confidence 110000 0000 0000000 1123333444444 345668899999999999987777
Q ss_pred chh---hHHHHHHHHHHHHHHHHcCccCCCCCceeeeechhccccccchhHHhhhccCce------EEEecCCcccccCC
Q 004114 694 DQE---GKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRE------LIIRDAKRFHHFKD 764 (773)
Q Consensus 694 ~~~---~k~~~l~~hse~LA~a~gli~~~~~~~i~ivknlr~cgdch~a~k~is~~~~r~------iivrd~~r~h~f~~ 764 (773)
.++ ++.+.....++.+...+|+.+...+.. ++++.+..+|+..+|.++|.+|+-.+ .++..|+.+.+.+.
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Confidence 666 455556667777777888876655554 78999999999999999999997543 44566766666665
Q ss_pred ccc
Q 004114 765 GLC 767 (773)
Q Consensus 765 G~c 767 (773)
|+.
T Consensus 676 ~e~ 678 (857)
T PLN03077 676 GEL 678 (857)
T ss_pred HHH
Confidence 544
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=424.54 Aligned_cols=418 Identities=17% Similarity=0.217 Sum_probs=340.7
Q ss_pred HHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhc------cHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004114 329 RQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNN------GTLEQLDGLVKEGKVKEAIEVLGLLE 402 (773)
Q Consensus 329 ~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~------~~~~LI~a~~~~G~~~eAl~lf~~M~ 402 (773)
+.++.+..++..|++.|+.||+.+++.||++|+++|++++|.++|..+ .+..||.+|++.|++++|+++|++|.
T Consensus 137 ~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 137 KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345556788999999999999999999999999999999999987543 34569999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHH
Q 004114 403 KQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTM 482 (773)
Q Consensus 403 ~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~L 482 (773)
+.|+.||..||+++|.+|+..|.++.+.++|..|.+.|+.+|..+|++||++|+|+|++++|.++|++|.++|+++||+|
T Consensus 217 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~l 296 (697)
T PLN03081 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM 296 (697)
T ss_pred HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCC
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY 562 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~ 562 (773)
|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.+++..|.+. |+.||..+|++||++|+++|+
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999887 999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCc------hHHHHcCCchhhhhHHHHH--
Q 004114 563 LDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL--DPSRL------NEKSKAGLVPVNASELAKE-- 632 (773)
Q Consensus 563 l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el--~p~~~------~~y~~aG~~~~~v~~lmk~-- 632 (773)
+++|.++|++|. +||+.+|++||.+|+++|+.++|.++++.|.+. .|+.. .++...|.+.. +..+.+.
T Consensus 376 ~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~-a~~~f~~m~ 453 (697)
T PLN03081 376 MEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ-GWEIFQSMS 453 (697)
T ss_pred HHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH-HHHHHHHHH
Confidence 999999999997 689999999999999999999999999999874 56553 56778888754 3333322
Q ss_pred --hcccccccccEEEEcCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCcchheeccchhhHHHH---HHHHHH
Q 004114 633 --KENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEA---LLAHSE 707 (773)
Q Consensus 633 --~~l~k~~~~s~ie~~~~v~~f~~g~~~hp~~~ei~~~l~~L~~~Mke~G~~Pd~~~~l~~v~~~~k~~~---l~~hse 707 (773)
.++.+.... ... .+.+.......++.+ +.+++.++.|+..++...+.+|.+... .....+
T Consensus 454 ~~~g~~p~~~~----y~~----li~~l~r~G~~~eA~-------~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 454 ENHRIKPRAMH----YAC----MIELLGREGLLDEAY-------AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HhcCCCCCccc----hHh----HHHHHHhcCCHHHHH-------HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 233221110 011 111112223334333 234456788988776555555533222 222223
Q ss_pred HHHHHHcCccCCCCCceeeeechhccccccchhHHhhhccCceEEE-------ecCCcccccCCccc
Q 004114 708 RLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELII-------RDAKRFHHFKDGLC 767 (773)
Q Consensus 708 ~LA~a~gli~~~~~~~i~ivknlr~cgdch~a~k~is~~~~r~iiv-------rd~~r~h~f~~G~c 767 (773)
+ .+++.+.....-+.+++.+..+|+..+|.+++..|..+.+-. .-....|.|.-|-.
T Consensus 519 ~---l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 519 K---LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred H---HhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 2 245554444555677888999999999999999999887431 22245566765543
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-42 Score=425.39 Aligned_cols=415 Identities=16% Similarity=0.232 Sum_probs=332.0
Q ss_pred HHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhcc----------HHHHHHHHHHcCCHHHHHHHHH
Q 004114 330 QYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNG----------TLEQLDGLVKEGKVKEAIEVLG 399 (773)
Q Consensus 330 ~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~----------~~~LI~a~~~~G~~~eAl~lf~ 399 (773)
.++.+..++..|.+.|+.||..+|++||.+|+++|++++|.++|..+. +..||.+|++.|++++|+++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 345567888899999999999999999999999999999999864332 2359999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc----
Q 004114 400 LLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVER--LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---- 473 (773)
Q Consensus 400 ~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k--~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---- 473 (773)
+|.+.|+.||..||++||.+|++.|++++|.++|++|.+ .|+.||..+|++||++|+++|++++|+++|++|.+
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999987 58999999999999999999999999999999985
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhH
Q 004114 474 RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSI 553 (773)
Q Consensus 474 ~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~L 553 (773)
|+.++|++||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.++|+.|.+. |+.|+..+|++|
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~tynsL 690 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSL 690 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHH
Confidence 4779999999999999999999999999999999999999999999999999999999999999876 999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCc------hHHHHcCCc
Q 004114 554 VDMLGSTGYLDEALEFIEKM---PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL--DPSRL------NEKSKAGLV 622 (773)
Q Consensus 554 I~~y~r~G~l~eA~~lf~~M---~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el--~p~~~------~~y~~aG~~ 622 (773)
|.+|+++|++++|.++|++| ++.||..+|++||.+|++.|++++|.++++.|.+. .|+.. ..+...|.+
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999 78999999999999999999999999999999765 45542 456777776
Q ss_pred hhh--hhHHHHHhcccccccc--cEE-----------EEcCEEEEEEeCCCCCccH-HHHHHHHHHHHHHHHHcCcccCc
Q 004114 623 PVN--ASELAKEKENKKLASQ--NLL-----------EVRSKVHEYRAGDTSHPET-DKIYALIRGLRAQMKEAGYIPET 686 (773)
Q Consensus 623 ~~~--v~~lmk~~~l~k~~~~--s~i-----------e~~~~v~~f~~g~~~hp~~-~ei~~~l~~L~~~Mke~G~~Pd~ 686 (773)
... +...|...++...... +.+ .+...+..|..+ ++.. ..-..++-.|+++|++.|++||.
T Consensus 771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG---RPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc---ccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 532 2233444444332210 000 111111122111 1111 11123455788999999999999
Q ss_pred chheeccchhhHHHHHHHHHHHHHHHHcCccCCCCCce--eeeechhcccc-ccchhHHhhhccCceEE
Q 004114 687 RFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPI--RIMKNLRVCGD-CHSALKIISKIVGRELI 752 (773)
Q Consensus 687 ~~~l~~v~~~~k~~~l~~hse~LA~a~gli~~~~~~~i--~ivknlr~cgd-ch~a~k~is~~~~r~ii 752 (773)
.++...+ .|-........+..+-..+++....++... .+++.+ +. -..|..++..|..+.|+
T Consensus 848 ~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 848 EVLSQVL-GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHHHH-HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCC
Confidence 8877666 332222223345566666776666555442 234433 22 24799999988877643
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.6e-39 Score=390.94 Aligned_cols=335 Identities=17% Similarity=0.244 Sum_probs=262.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhhh----------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQN----------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQL 416 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~~----------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~L 416 (773)
.||..+|+.||.+|++.|++++|.+++.. ..+..||.+|++.|++++|+++|++|.+.|+.||..||++|
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 38888999999999999999988887532 22335889999999999999999999988888999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh------cCCHhHHHHHHHHHHHcC
Q 004114 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT------ERDLTSWDTMITGFAKNG 490 (773)
Q Consensus 417 L~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~------~~d~~tyn~LI~ay~~~G 490 (773)
|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||.++|++||.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999888889999999999999999999999999998885 368889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHH
Q 004114 491 LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFI 570 (773)
Q Consensus 491 ~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf 570 (773)
++++|+++|++|.+.|+.|+..+|++||.+|++.|++++|.++|++|.+. |+.||..+|++||++|++.|++++|.++|
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999899999999999999999999999999999998776 88999889999999999999999999999
Q ss_pred HhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCc------hHHHHcCCchhhhh--HHHHHhcccc
Q 004114 571 EKM---PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL--DPSRL------NEKSKAGLVPVNAS--ELAKEKENKK 637 (773)
Q Consensus 571 ~~M---~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el--~p~~~------~~y~~aG~~~~~v~--~lmk~~~l~k 637 (773)
++| ++.||..+|++||.+|++.|++++|.++++.|.+. .|+.. ..|...|.+.+... ..|+..++.+
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 888 77889999999999999999999998888888764 44432 56677777754322 2233344333
Q ss_pred cccccEEEEcCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCcchheeccc
Q 004114 638 LASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDID 694 (773)
Q Consensus 638 ~~~~s~ie~~~~v~~f~~g~~~hp~~~ei~~~l~~L~~~Mke~G~~Pd~~~~l~~v~ 694 (773)
.... +...+ .+...... +.....++..|++.|+.||..++...++
T Consensus 753 d~~T----y~sLL----~a~~k~G~----le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 753 NTIT----YSILL----VASERKDD----ADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred CHHH----HHHHH----HHHHHCCC----HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2111 00000 11111112 3345567788888888888776554443
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.91 E-value=7e-25 Score=203.34 Aligned_cols=106 Identities=58% Similarity=1.019 Sum_probs=95.9
Q ss_pred cccEEEEcCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCcchheeccchhhH--------HHHHHHHHHHHHH
Q 004114 640 SQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGK--------EEALLAHSERLAV 711 (773)
Q Consensus 640 ~~s~ie~~~~v~~f~~g~~~hp~~~ei~~~l~~L~~~Mke~G~~Pd~~~~l~~v~~~~k--------~~~l~~hse~LA~ 711 (773)
+++|+++ |.|.+|+.+||.. .+..+|+..||.|++..+.++++++.+ +..++.||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 5788876 9999999999987 445677889999999999988877655 5688999999999
Q ss_pred HHcCccCCCCCceeeeech-hccccccchhHHhhhccCceEEEecCCcccccC
Q 004114 712 SHGLLSSPARAPIRIMKNL-RVCGDCHSALKIISKIVGRELIIRDAKRFHHFK 763 (773)
Q Consensus 712 a~gli~~~~~~~i~ivknl-r~cgdch~a~k~is~~~~r~iivrd~~r~h~f~ 763 (773)
||||+.+ +|+||+ |||+|||+|+|+||++.+|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999988 899999 999999999999999999999999999999996
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.72 E-value=5.6e-15 Score=164.35 Aligned_cols=284 Identities=13% Similarity=0.102 Sum_probs=211.8
Q ss_pred chHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhh-------------ccHHHHHHHHHHcCCHHHHHHHHHH
Q 004114 334 NPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQN-------------NGTLEQLDGLVKEGKVKEAIEVLGL 400 (773)
Q Consensus 334 ~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~-------------~~~~~LI~a~~~~G~~~eAl~lf~~ 400 (773)
+......+++.. ..+..++..+...|.+.|++++|..++.. ..+..+...|.+.|++++|+.+|.+
T Consensus 54 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 132 (389)
T PRK11788 54 AIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQ 132 (389)
T ss_pred HHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333344444332 23456788888999999999999885321 1123467888899999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C
Q 004114 401 LEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR----VSTYNGILKMYSECDSMDDAFSVFSNMTE--R 474 (773)
Q Consensus 401 M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd----~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~ 474 (773)
+.+.. ..+..++..++..+.+.|++++|.+++..+.+.+..+. ...+..+...+.+.|++++|+.+|+++.+ |
T Consensus 133 ~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 211 (389)
T PRK11788 133 LVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP 211 (389)
T ss_pred HHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc
Confidence 98752 34677888899999999999999999999888654332 22456677788889999999999998864 3
Q ss_pred -CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhH
Q 004114 475 -DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSI 553 (773)
Q Consensus 475 -d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~L 553 (773)
+...+..+...|.+.|++++|+++|+++...+......++..++.+|...|++++|..+++++.+. .|+...+..+
T Consensus 212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~l 288 (389)
T PRK11788 212 QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLAL 288 (389)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHH
Confidence 456788888899999999999999999887542222456788888999999999999999888654 4677777888
Q ss_pred HHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHH--cCCCCchHHHHcCCc
Q 004114 554 VDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRM---HGNLELGDRCAEIVEQ--LDPSRLNEKSKAGLV 622 (773)
Q Consensus 554 I~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~---~G~~e~A~~~~e~m~e--l~p~~~~~y~~aG~~ 622 (773)
+.+|.+.|++++|.++++++ ...|+..++..++..+.. .|+.+++..+++.+.+ +.|+....+...|..
T Consensus 289 a~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~cg~~ 363 (389)
T PRK11788 289 AQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRNCGFT 363 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCCCCCC
Confidence 89999999999999999876 557888888888887765 4577788777776654 344433445555544
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.70 E-value=2e-14 Score=159.96 Aligned_cols=249 Identities=15% Similarity=0.094 Sum_probs=154.8
Q ss_pred HHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHH
Q 004114 360 CKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVD---LPTFSQLMQACGDAKALE 427 (773)
Q Consensus 360 y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd---~~ty~~LL~a~~~~g~le 427 (773)
+...|++++|...+. +.....+...+.+.|++++|+.+++.+......++ ..++..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 445566666666431 11122355666777777777777777766432221 234566666677777777
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC--------HhHHHHHHHHHHHcCChHHHHHHH
Q 004114 428 EAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERD--------LTSWDTMITGFAKNGLGEDAVDIF 499 (773)
Q Consensus 428 ~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d--------~~tyn~LI~ay~~~G~~deAl~Lf 499 (773)
+|..+|..+.+.. +.+..++..++.+|.+.|++++|+++|+.+.+.+ ...|..+...+.+.|++++|+.+|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777777776642 3355667777777777777777777777765321 113455666666777777777777
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC
Q 004114 500 SQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP 577 (773)
Q Consensus 500 ~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P 577 (773)
+++.+.. |+ ..++..+...+.+.|++++|.++|+++.+. .-.....++..|+.+|.+.|++++|.++++++ ...|
T Consensus 204 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 204 KKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7776542 33 345566666777777777777777776543 11111345666777777777777777777766 3456
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 578 DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 578 d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
+..++..+...+.+.|+++.|..+++.+.+..|++
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 65556666777777777777777777666666654
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.60 E-value=1.4e-12 Score=157.79 Aligned_cols=259 Identities=13% Similarity=0.041 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHhhhh---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 350 GMMASQVLNNCKHEDDFAEASRSSQN---------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQAC 420 (773)
Q Consensus 350 ~~~~n~LI~~y~k~g~~~~A~~v~~~---------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~ 420 (773)
..++..+...+...|++++|..++.. ..+..+...+.+.|+.++|+.+|.++.+.. ..+...+..+...+
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYY 577 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHH
Confidence 34455555666666666666554211 111124555555666666666666655442 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHH
Q 004114 421 GDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVD 497 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~ 497 (773)
...|++++|..+++.+.+.. +.+..+|..+..+|.+.|++++|+..|+++.+ .+...|..+..+|...|++++|+.
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 56666666666665555432 33455555566666666666666666655542 144455555556666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCC
Q 004114 498 IFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PME 576 (773)
Q Consensus 498 Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~ 576 (773)
+|+++.+.. ..+..++..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.|+.+ ...
T Consensus 657 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 657 SLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 665555431 122445555555555566666666666555443 2334445555555555666666666655554 333
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 577 PDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 577 Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
|+..++..+..++...|++++|...++.+.+..|.+.
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 770 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDA 770 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 4445555555555555666655555555555555553
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.58 E-value=4.2e-12 Score=153.77 Aligned_cols=262 Identities=14% Similarity=0.064 Sum_probs=201.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhhh---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQN---------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLM 417 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~~---------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL 417 (773)
+.+..++..+...|.+.|+.++|...+.. .....++..|.+.|++++|+.+++++.+. ...+..+|..+.
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~ 608 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLG 608 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHH
Confidence 34667788888888889999888886421 22234778888889999999998888765 345677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHH
Q 004114 418 QACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGED 494 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~de 494 (773)
.++...|++++|...+..+++.. +.+...+..+..+|.+.|++++|..+|+++.+ .+..+|..++..+...|++++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 88888888999998888888764 33566788888888888888888888888763 257788888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-
Q 004114 495 AVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM- 573 (773)
Q Consensus 495 Al~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M- 573 (773)
|+.+++.|.... ..+..++..+...+...|++++|...|..+... .|+..++..+..++.+.|++++|.+.++.+
T Consensus 688 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 688 AKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWL 763 (899)
T ss_pred HHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888888887764 345566777777888888888888888877553 355567777888888888888888888776
Q ss_pred -CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch
Q 004114 574 -PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 574 -~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~ 614 (773)
....+..++..+...|...|++++|...++.+.+..|+++.
T Consensus 764 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 805 (899)
T TIGR02917 764 KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV 805 (899)
T ss_pred HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH
Confidence 22335677777777888888888888888888888877753
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.34 E-value=1.1e-09 Score=131.03 Aligned_cols=258 Identities=11% Similarity=0.030 Sum_probs=189.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhhh---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQN---------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQA 419 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~~---------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a 419 (773)
+...+..+..++...|++++|...+.. .....+...+...|++++|+..++++...... +...+..+ ..
T Consensus 109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~ 186 (656)
T PRK15174 109 QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LS 186 (656)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HH
Confidence 445677778888888998888875321 11123677788889999999988888665322 22233223 34
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHH--
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGED-- 494 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~de-- 494 (773)
+...|++++|..+++.+++....++...+..+..++.+.|+.++|+..|+++.+ | +...+..+...|...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH
Confidence 677888999999888887764333444555567788888999999999988764 2 66778888888899999885
Q ss_pred --HHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHH
Q 004114 495 --AVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFI 570 (773)
Q Consensus 495 --Al~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf 570 (773)
|+..|++..+. .|+ ..++..+...+...|++++|..++++..+. .|+ ...+..+..+|.+.|++++|.+.|
T Consensus 267 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 267 LQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 78888888774 454 457788888888899999999988887653 344 456667788888999999999998
Q ss_pred HhC-CCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 571 EKM-PMEPDVDVW-EKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 571 ~~M-~~~Pd~~ty-~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
+.+ ...|+...+ ..+..++...|+.++|...++.+.+..|++.
T Consensus 342 ~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 342 VQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 877 345664433 3345678888999999999999888888764
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.33 E-value=1.3e-09 Score=130.47 Aligned_cols=288 Identities=10% Similarity=-0.007 Sum_probs=195.0
Q ss_pred HhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHH
Q 004114 331 YQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLL 401 (773)
Q Consensus 331 f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M 401 (773)
+..+..+...++...-.. ....-.|..++...|+.++|...+. ...+..+...+.+.|++++|++.|+++
T Consensus 58 ~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 58 TDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred cchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333344444443333222 3334444455566888888888532 112233667778888888888888888
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC----CH
Q 004114 402 EKQCISV-DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER----DL 476 (773)
Q Consensus 402 ~~~Gv~P-d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~----d~ 476 (773)
.+. .| +...+..+..++...|++++|...+..+...... +...+..+ ..+.+.|++++|+.+++.+.+. +.
T Consensus 137 l~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~ 212 (656)
T PRK15174 137 WLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQ 212 (656)
T ss_pred HHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcch
Confidence 765 34 4556777788888888888888888877665432 23333333 3467788888888888887643 23
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHH----HHHHHHHHHHhcCCCC-Ccchhh
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVE----GMLHFESMSKDYGIVP-SMKHYV 551 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~de----A~~if~~M~~~~Gi~P-d~~tyn 551 (773)
..+..+..++...|++++|+..|+++.+.. .-+...+..+-.++...|+.++ |..+|++..+. .| +...+.
T Consensus 213 ~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~ 288 (656)
T PRK15174 213 ESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVT 288 (656)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHH
Confidence 344555677888888888888888888753 2235566777788888888875 67778777543 34 456778
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-------HHHHcCCc
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN-------EKSKAGLV 622 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~-------~y~~aG~~ 622 (773)
.+..+|.+.|++++|...+++. ...|+ ..++..+..++...|++++|...++.+.+..|.... .+...|..
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKT 368 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCH
Confidence 8888888899999998888876 34454 556777788888889999998888888888888742 24455555
Q ss_pred hhhhh
Q 004114 623 PVNAS 627 (773)
Q Consensus 623 ~~~v~ 627 (773)
...+.
T Consensus 369 deA~~ 373 (656)
T PRK15174 369 SEAES 373 (656)
T ss_pred HHHHH
Confidence 44433
No 14
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=2.7e-11 Score=95.37 Aligned_cols=50 Identities=28% Similarity=0.602 Sum_probs=47.9
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004114 474 RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA 523 (773)
Q Consensus 474 ~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~ 523 (773)
||+++||+||.+|++.|++++|+++|++|++.|++||..||++||.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999975
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.16 E-value=4.5e-08 Score=116.52 Aligned_cols=263 Identities=11% Similarity=0.028 Sum_probs=194.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCC-C---------
Q 004114 346 NIQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQC-I--------- 406 (773)
Q Consensus 346 l~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~G-v--------- 406 (773)
+.|+...|..+..+|.+.|++++|+..+. ...+..+-.+|...|++++|+.-|....... .
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 45788889999999999999999998421 1122236778889999999987664432211 0
Q ss_pred ------------------CC----CHHHHHHHH---------------------------HH------HHhcCCHHHHHH
Q 004114 407 ------------------SV----DLPTFSQLM---------------------------QA------CGDAKALEEAKA 431 (773)
Q Consensus 407 ------------------~P----d~~ty~~LL---------------------------~a------~~~~g~le~A~~ 431 (773)
.| ........+ .. ....+.+++|.+
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence 01 000000000 00 011246788889
Q ss_pred HHHHHHHhC-CCC-CHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004114 432 VHEHVERLL-SPL-RVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG 506 (773)
Q Consensus 432 l~~~m~k~G-~~p-d~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G 506 (773)
+|+..++.+ ..| ....+..+...+...|++++|+..|++..+ | ...+|..+...+...|++++|+..|++..+..
T Consensus 316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 395 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN 395 (615)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 998888764 223 455778888888899999999999998764 3 45678888889999999999999999987753
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHH
Q 004114 507 LKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWE 583 (773)
Q Consensus 507 v~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~ 583 (773)
.-+..+|..+...+...|++++|...|+...+ +.| +...+..+..++.+.|++++|+..|++. ...|+ ...|.
T Consensus 396 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~ 471 (615)
T TIGR00990 396 -SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYN 471 (615)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 22456788888889999999999999988765 344 4566777888899999999999999876 44454 67888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 584 KLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 584 ~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.+..++...|++++|...++...++.|..
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 88889999999999999999999998864
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.15 E-value=8.9e-08 Score=113.97 Aligned_cols=220 Identities=16% Similarity=0.064 Sum_probs=176.5
Q ss_pred CCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhCCChHHHH
Q 004114 389 GKVKEAIEVLGLLEKQC-ISV-DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR-VSTYNGILKMYSECDSMDDAF 465 (773)
Q Consensus 389 G~~~eAl~lf~~M~~~G-v~P-d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd-~~tynaLI~ay~k~G~l~eA~ 465 (773)
+++++|+++|++..+.+ ..| ....|..+...+...|++++|+..++..++. .|+ ...|..+..+|...|++++|+
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 57889999999998765 334 3456777777788999999999999999885 344 568888999999999999999
Q ss_pred HHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhc
Q 004114 466 SVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDY 541 (773)
Q Consensus 466 ~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~ 541 (773)
..|++..+ .+..+|..+...|...|++++|+..|++.++. .|+ ...+..+..++.+.|++++|+.+|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 99998764 36788999999999999999999999999875 454 556777888889999999999999988664
Q ss_pred CCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCH--------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 542 GIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDV--------DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 542 Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~--------~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.+-+...|+.+..+|...|++++|.+.|+.. .+.|+. ..++..+..+...|++++|..+++...+++|++
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 2335678889999999999999999999885 333421 112222233444699999999999999999988
Q ss_pred ch
Q 004114 613 LN 614 (773)
Q Consensus 613 ~~ 614 (773)
..
T Consensus 542 ~~ 543 (615)
T TIGR00990 542 DI 543 (615)
T ss_pred HH
Confidence 53
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.07 E-value=3.1e-07 Score=116.92 Aligned_cols=259 Identities=12% Similarity=0.129 Sum_probs=151.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHhhhh----c----c---H------------HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004114 348 QNGMMASQVLNNCKHEDDFAEASRSSQN----N----G---T------------LEQLDGLVKEGKVKEAIEVLGLLEKQ 404 (773)
Q Consensus 348 pd~~~~n~LI~~y~k~g~~~~A~~v~~~----~----~---~------------~~LI~a~~~~G~~~eAl~lf~~M~~~ 404 (773)
.+..++..|-.+|.+.|+.++|+..+.. . . + ..+-..+.+.|++++|++.|+++.+.
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3677888899999999999999985310 0 0 0 01234567899999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-----------------------------
Q 004114 405 CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMY----------------------------- 455 (773)
Q Consensus 405 Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay----------------------------- 455 (773)
. +.+...+..+..++...|++++|++.|+++++... .+...+..|...|
T Consensus 381 ~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 381 D-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3 23556777788889999999999999999987632 2333444444433
Q ss_pred -------------HhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 004114 456 -------------SECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVF 518 (773)
Q Consensus 456 -------------~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL 518 (773)
...|+.++|++.|++..+ | +...+..+...|.+.|++++|+.+|+++.+. .|+ ...+..+.
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~a 536 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYG 536 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHH
Confidence 344555555555555442 2 3344445555555555555555555555442 122 22222222
Q ss_pred HHHHcCCChHHHHHHHHHHHHhcCCCCCc---------chhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004114 519 SACSALGDVVEGMLHFESMSKDYGIVPSM---------KHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLC 589 (773)
Q Consensus 519 ~a~~~~G~~deA~~if~~M~~~~Gi~Pd~---------~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~ 589 (773)
..+...++.++|..+++.+... ...+.. ..+..+...+...|+.++|.++++.-+ .+...+..|...+
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~ 613 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWA 613 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHH
Confidence 2334455555555555543211 000000 011123344555666666666666332 2334455566667
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCc
Q 004114 590 RMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 590 ~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
...|+.++|..+++.+.+++|+++
T Consensus 614 ~~~g~~~~A~~~y~~al~~~P~~~ 637 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTREPGNA 637 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCH
Confidence 777777777777777777777764
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.07 E-value=1.2e-08 Score=114.55 Aligned_cols=277 Identities=16% Similarity=0.134 Sum_probs=143.9
Q ss_pred HHHHHhhchHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHhhhh----ccH-----HHHHHHHHHcCCHHHHHH
Q 004114 327 SRRQYQQNPNEGQYQSYSGNIQ-NGMMASQVLNNCKHEDDFAEASRSSQN----NGT-----LEQLDGLVKEGKVKEAIE 396 (773)
Q Consensus 327 a~~~f~~~~~~~~~m~~~gl~p-d~~~~n~LI~~y~k~g~~~~A~~v~~~----~~~-----~~LI~a~~~~G~~~eAl~ 396 (773)
.++.++.+......+++. .| .+..|..|..++...|+.+.|...+.. +.. ..+-.-+-..|++++|..
T Consensus 128 erg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence 334455444444444332 23 234566666777777777776664211 110 001122223455666666
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHhh--
Q 004114 397 VLGLLEKQCISVD-LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR-VSTYNGILKMYSECDSMDDAFSVFSNMT-- 472 (773)
Q Consensus 397 lf~~M~~~Gv~Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd-~~tynaLI~ay~k~G~l~eA~~lf~~M~-- 472 (773)
.+.+..+. .|. .+.|+.|--.+-..|++.+|.+-|++.++. .|+ ...|-.|-..|...+.+++|...+.+..
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 55555443 222 234555555555566666666666666553 232 3345555555666666666666555443
Q ss_pred cC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchh
Q 004114 473 ER-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHY 550 (773)
Q Consensus 473 ~~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~ty 550 (773)
.| ..+.|..|...|-..|.+|-|+..|++.++ +.|+ ...|+.|..|+-..|++.+|.+.|.....- ..-.....
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam 357 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAM 357 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHH
Confidence 22 344455555555555666666666665554 2343 235666666666666666666666554332 11123445
Q ss_pred hhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 551 VSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 551 n~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
+.|-..|...|.+++|..+|... .+-|. ....+.|...|...|++++|...+++..++.|.-.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 55555666666666666665544 34444 34455555556666666666666666666655544
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.06 E-value=3.7e-07 Score=111.39 Aligned_cols=265 Identities=11% Similarity=0.018 Sum_probs=187.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhhh---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQN---------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLM 417 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~~---------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL 417 (773)
..+...+..+..++.+.|++++|..++.. .....+...+...|++++|+.++++..+.. +.+.. +..+.
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la 123 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALA 123 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHH
Confidence 34455688899999999999999986421 112247788889999999999999998762 33445 77788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHH----------------------------
Q 004114 418 QACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFS---------------------------- 469 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~---------------------------- 469 (773)
.++...|+.++|+..++++++.... +..++..+..++.+.+..++|++.++
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 8888999999999999999986432 45555667777777676665555444
Q ss_pred ------------------Hhhc-----CCHh-HH----HHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 004114 470 ------------------NMTE-----RDLT-SW----DTMITGFAKNGLGEDAVDIFSQFKQAGLK-PDDQIFIGVFSA 520 (773)
Q Consensus 470 ------------------~M~~-----~d~~-ty----n~LI~ay~~~G~~deAl~Lf~eM~~~Gv~-Pd~~Ty~~LL~a 520 (773)
.+.+ |+.. .+ ...+.++...|++++|+..|+++.+.+-. |+..- ..+..+
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHH
Confidence 3321 1110 01 11133456778999999999999887642 44322 224668
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCC--CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-------------C---HHH
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVP--SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-------------D---VDV 581 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~P--d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-------------d---~~t 581 (773)
+...|++++|+.+|+.+.+.....+ .......|..++...|++++|.++++.+ ...| + ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 8899999999999998765311111 1234566777889999999999999988 2222 2 234
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 582 WEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 582 y~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
+..+...+...|++++|+.+++.+.+..|.+..+
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l 395 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGL 395 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5566778889999999999999999999998643
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1.7e-08 Score=109.41 Aligned_cols=221 Identities=14% Similarity=0.230 Sum_probs=167.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHH-HHHHHHHHHh-------------------C
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGD--AKALEEA-KAVHEHVERL-------------------L 440 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~--~g~le~A-~~l~~~m~k~-------------------G 440 (773)
.-....|.++++.-+|+.|...|+..+...--.|+..-+- ..++--| .+-|-.|.+. -
T Consensus 123 ~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~ 202 (625)
T KOG4422|consen 123 LKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFET 202 (625)
T ss_pred HHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhh
Confidence 3445678999999999999999988887776666654332 1111111 1112222211 1
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 004114 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIG 516 (773)
Q Consensus 441 ~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~ 516 (773)
.+-+..+|.+||.++||--.++.|.+++.+-.+. +..+||.+|.+-.-. ...+|+.+|....++||..||++
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 3446679999999999999999999999988743 778999998765533 23789999999999999999999
Q ss_pred HHHHHHcCCChHHH----HHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHH-HHHHHHhC----------CCCC-CHH
Q 004114 517 VFSACSALGDVVEG----MLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDE-ALEFIEKM----------PMEP-DVD 580 (773)
Q Consensus 517 LL~a~~~~G~~deA----~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~e-A~~lf~~M----------~~~P-d~~ 580 (773)
||.+.++.|+++.| .+++.+|++ .|+.|...+|..+|..+++.++..+ |..++.++ ++.| |-.
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999988765 467788855 5999999999999999999988755 44444433 3444 467
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 581 VWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 581 ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
.+.+.+..|.+..+.+.|..+..++...
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg 385 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTG 385 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 7888999999999999999999888653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.06 E-value=2.3e-07 Score=113.13 Aligned_cols=193 Identities=9% Similarity=0.018 Sum_probs=126.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC-------HhHHHHHHHHHHHc
Q 004114 418 QACGDAKALEEAKAVHEHVERLLSP-LRVSTYNGILKMYSECDSMDDAFSVFSNMTERD-------LTSWDTMITGFAKN 489 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~G~~-pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d-------~~tyn~LI~ay~~~ 489 (773)
.++...+++++|+..|+.+++.+.+ |+. .--.+..+|...|++++|+.+|+++.+.+ ...+..|..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3445667777888888777776532 222 11224567777788888888877765321 23455566677777
Q ss_pred CChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHH
Q 004114 490 GLGEDAVDIFSQFKQAG-----------LKPDD---QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVD 555 (773)
Q Consensus 490 G~~deAl~Lf~eM~~~G-----------v~Pd~---~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~ 555 (773)
|++++|+.+++++.... -.|+. ..+..+...+...|++++|+++++++... .+-+...+..+..
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~ 401 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYAS 401 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 88888888877776542 11231 23445556667778888888877777554 3334566777777
Q ss_pred HHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 556 MLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 556 ~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
++...|+.++|++.+++. .+.|+ ...+..+...+...|+++.|+.+++.+.+..|+++
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 777788888888887766 44565 45555666667777788888888888887777775
No 22
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.06 E-value=1.8e-08 Score=113.15 Aligned_cols=228 Identities=11% Similarity=0.150 Sum_probs=182.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD-LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR-VSTYNGILKMYSEC 458 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd-~~tynaLI~ay~k~ 458 (773)
|-..|-..+.+++|+..+.+... ..|+ .+.|..|...|-..|.+|.|...+++.++. .|+ ...|+.|..++-..
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDK 333 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhc
Confidence 34444445555666666555544 3453 456777777777889999999999988875 344 56899999999999
Q ss_pred CChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCChHHHHHHH
Q 004114 459 DSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD-QIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 459 G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~-~Ty~~LL~a~~~~G~~deA~~if 534 (773)
|++.+|++.+..... | -..+.+.|-..|...|++++|..+|....+ +-|.. ..++.|...|-..|++++|+..|
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 999999999988774 3 456788899999999999999999988776 55663 47888999999999999999999
Q ss_pred HHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 535 ESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 535 ~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
++.. .|+|+ ...|+.|-..|-..|+++.|.+.+.+. .+.|. ....+.|...+...|++.+|...++...+++|+
T Consensus 412 keal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 412 KEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 8764 47786 478888888999999999999998876 66676 567888999999999999999999999999999
Q ss_pred CchHHH
Q 004114 612 RLNEKS 617 (773)
Q Consensus 612 ~~~~y~ 617 (773)
.+++|.
T Consensus 489 fpdA~c 494 (966)
T KOG4626|consen 489 FPDAYC 494 (966)
T ss_pred Cchhhh
Confidence 986654
No 23
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.03 E-value=4.3e-07 Score=115.66 Aligned_cols=222 Identities=14% Similarity=0.110 Sum_probs=169.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISV-DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~P-d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
+...+...|++++|++.|++.++. .| +...+..+...+.+.|++++|..+++.+++.. +.+...+-.+...+.+.+
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCC
Confidence 445667889999999999988875 34 45567778888889999999999999888753 224445555555677788
Q ss_pred ChHHHHHHHHHhhcC----CH---------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 460 SMDDAFSVFSNMTER----DL---------TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 460 ~l~eA~~lf~~M~~~----d~---------~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
+.++|+..++.+... +. ..+..+...+...|+.++|+.+++. ...+...+..+...+.+.|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCC
Confidence 999999998887532 11 1123456678889999999998872 23445566778888899999
Q ss_pred hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 527 VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 527 ~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
.++|+.+|+...+. -+.+...+..|+.+|...|+.++|++.++.. ...|+ ..++..+..++...|++++|..+++.
T Consensus 619 ~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 619 YAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999988764 2335778889999999999999999999987 34443 56677788888899999999999999
Q ss_pred HHHcCCCC
Q 004114 605 VEQLDPSR 612 (773)
Q Consensus 605 m~el~p~~ 612 (773)
+.+..|++
T Consensus 697 al~~~~~~ 704 (1157)
T PRK11447 697 LIPQAKSQ 704 (1157)
T ss_pred HhhhCccC
Confidence 98876544
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.03 E-value=7.2e-08 Score=119.14 Aligned_cols=226 Identities=10% Similarity=0.012 Sum_probs=166.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSV 467 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~l 467 (773)
.++..+|+..|.+.... .|+......+..++...|++++|...++.+... +|+...+..+..++.+.|+.++|..+
T Consensus 489 ~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 489 DTLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred hCCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 37888888877777665 466555444455556888999999998887553 44445566677788888999999999
Q ss_pred HHHhhcCCHhHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCC
Q 004114 468 FSNMTERDLTSWD---TMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIV 544 (773)
Q Consensus 468 f~~M~~~d~~tyn---~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~ 544 (773)
|++..+.+...+. .+...+.+.|++++|+..|++..+. .|+...+..+..++.+.|+.++|+..+.+..+. .
T Consensus 565 l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~ 639 (987)
T PRK09782 565 LQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL---E 639 (987)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---C
Confidence 8877754322222 2333444558999999999888763 577778888888888999999999888887553 4
Q ss_pred C-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcCC
Q 004114 545 P-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGL 621 (773)
Q Consensus 545 P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG~ 621 (773)
| +...+..|-.++...|+.++|.+++++. ...| +...+..+-.++...|++++|+..++...+++|+...+....|.
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~ 719 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPE 719 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhH
Confidence 5 4566777777888899999999988876 4455 46778888888899999999999999999998888655555554
Q ss_pred c
Q 004114 622 V 622 (773)
Q Consensus 622 ~ 622 (773)
+
T Consensus 720 ~ 720 (987)
T PRK09782 720 Q 720 (987)
T ss_pred H
Confidence 4
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=2.4e-07 Score=100.72 Aligned_cols=259 Identities=11% Similarity=0.096 Sum_probs=181.9
Q ss_pred HHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004114 328 RRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCIS 407 (773)
Q Consensus 328 ~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~ 407 (773)
.-.|....++...|+...+.||..|+|+|+.+.++.|+++.|+. .|++++.+|++-|+.
T Consensus 251 ~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------aalqil~EmKeiGVe 309 (625)
T KOG4422|consen 251 ASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------------------AALQILGEMKEIGVE 309 (625)
T ss_pred HHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------HHHHHHHHHHHhCCC
Confidence 33455557788889999999999999999999999999998888 378899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHh--C--C----CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC----
Q 004114 408 VDLPTFSQLMQACGDAKALE-EAKAVHEHVERL--L--S----PLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---- 474 (773)
Q Consensus 408 Pd~~ty~~LL~a~~~~g~le-~A~~l~~~m~k~--G--~----~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---- 474 (773)
|...+|..+|...++.++.. .|..+..++... | + +-|...+..-|+.|....+.+-|..+-.-....
T Consensus 310 PsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~ 389 (625)
T KOG4422|consen 310 PSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK 389 (625)
T ss_pred cchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh
Confidence 99999999999998887753 344455444432 2 2 234566777888888889999998887766532
Q ss_pred ----C---HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCc
Q 004114 475 ----D---LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSM 547 (773)
Q Consensus 475 ----d---~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~ 547 (773)
+ ..-|.-+....|+....+..+.+|+.|.-.-+-|...|...++.|....+.++-..+++..|+. +|..-..
T Consensus 390 ~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~ 468 (625)
T KOG4422|consen 390 FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRS 468 (625)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhH
Confidence 1 2346677888888888999999999998777788889999999999989988888888888754 3533333
Q ss_pred chhhhHHHHHHhCC---------CHH-----HHHHHHH-------hC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004114 548 KHYVSIVDMLGSTG---------YLD-----EALEFIE-------KM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 548 ~tyn~LI~~y~r~G---------~l~-----eA~~lf~-------~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
..-.-++..+++.. .+. -|..+++ +| ...-.....+.++-.+.+.|..++|.+++.++
T Consensus 469 ~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 469 DLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 33333333444332 010 1111221 12 11223445555566667778888888877777
Q ss_pred HHc
Q 004114 606 EQL 608 (773)
Q Consensus 606 ~el 608 (773)
.+-
T Consensus 549 ~~~ 551 (625)
T KOG4422|consen 549 LRK 551 (625)
T ss_pred Hhc
Confidence 543
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.00 E-value=1.1e-09 Score=117.00 Aligned_cols=211 Identities=18% Similarity=0.159 Sum_probs=68.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 004114 387 KEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFS 466 (773)
Q Consensus 387 ~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~ 466 (773)
..+++++|++.++++...+.. +...+..++.. ...+++++|..++....+.. ++...+..++..|.+.++++++.+
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~ 131 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEE 131 (280)
T ss_dssp ------------------------------------------------------------------H-HHHTT-HHHHHH
T ss_pred ccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHH
Confidence 345555666666655544322 23334444444 45555555555555443332 233344455555555566666666
Q ss_pred HHHHhhc-----CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 004114 467 VFSNMTE-----RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKD 540 (773)
Q Consensus 467 lf~~M~~-----~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~ 540 (773)
+++.+.. .+...|..+...+.+.|+.++|+++|++..+. .|+ ......++..+...|+.+++..++....+.
T Consensus 132 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 132 LLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp HHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 5555431 24445555555555666666666666655553 343 334455555555556555555555555443
Q ss_pred cCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004114 541 YGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 541 ~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
.+.+...+..+..+|...|+.++|+.+|++. ...| |..+...+..++...|+.++|.++.+.+
T Consensus 210 --~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 210 --APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp ---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred --CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2334445555555566666666666665554 1122 4455555555555666665555554433
No 27
>PF13041 PPR_2: PPR repeat family
Probab=99.00 E-value=8.7e-10 Score=86.74 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 408 VDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 408 Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
||.++|++||++|++.|++++|.++|++|.+.|+.||..||++||++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999885
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.00 E-value=2.4e-09 Score=114.58 Aligned_cols=238 Identities=16% Similarity=0.198 Sum_probs=103.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTF-SQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty-~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
+...+.+.|++++|++++++.......|+...| ..+...+-..++.+.|...++.+...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 456677889999999999665544323444444 44444556788999999999999987543 55567777777 6889
Q ss_pred ChHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004114 460 SMDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG-LKPDDQIFIGVFSACSALGDVVEGMLHFES 536 (773)
Q Consensus 460 ~l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G-v~Pd~~Ty~~LL~a~~~~G~~deA~~if~~ 536 (773)
+.++|.++++..-+ ++...+..++..+.+.++++++..+++++.... ...+...|..+...+.+.|+.++|++++++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999987643 466778889999999999999999999987643 345667788888889999999999999999
Q ss_pred HHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 537 MSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 537 M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
..+. .| +......++..+...|+.++|.++++.. ....|...|..+..++...|+.++|...++...+..|+++
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 8764 45 4778889999999999999988888776 1234556788999999999999999999999999999997
Q ss_pred h-------HHHHcCCch
Q 004114 614 N-------EKSKAGLVP 623 (773)
Q Consensus 614 ~-------~y~~aG~~~ 623 (773)
. ++...|...
T Consensus 249 ~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKD 265 (280)
T ss_dssp HHHHHHHHHHT------
T ss_pred ccccccccccccccccc
Confidence 3 344555553
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.99 E-value=2.1e-07 Score=93.79 Aligned_cols=193 Identities=15% Similarity=0.123 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHc
Q 004114 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKN 489 (773)
Q Consensus 413 y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~ 489 (773)
+..+...+...|++++|...++++++.. +.+...+..+...|...|++++|++.|++..+ .+...+..+...|...
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 3333444444444444444444444332 11233444444444445555555555444432 1333444444555555
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHH
Q 004114 490 GLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALE 568 (773)
Q Consensus 490 G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~ 568 (773)
|++++|+..|++.......| ....+..+..++...|++++|...+.+..+. .+.+...+..+...+...|++++|.+
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555554432111 1223444445555556666666665555432 11223445555566666666666666
Q ss_pred HHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 569 FIEKM-PM-EPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 569 lf~~M-~~-~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
++++. .. ..+...+..+...+...|+.+.|..+.+.+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 66554 11 123444445555666666666666665555443
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.97 E-value=2.9e-07 Score=92.69 Aligned_cols=189 Identities=13% Similarity=0.082 Sum_probs=157.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
.+...|...|++++|++.|+++.+.. +-+...+..+...+...|++++|.+.+...++.. +.+...+..+...|...|
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcc
Confidence 47788899999999999999998763 3346678888889999999999999999998875 335677888899999999
Q ss_pred ChHHHHHHHHHhhcC-----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 004114 460 SMDDAFSVFSNMTER-----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 460 ~l~eA~~lf~~M~~~-----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
++++|++.|++..+. ....|..+...+...|++++|...|.+...... .+...+..+...+...|++++|..++
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~ 192 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARAYL 192 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999988642 345677788899999999999999999887532 24567888888999999999999999
Q ss_pred HHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 535 ESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 535 ~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
++.... .+.+...+..++..+...|+.++|..+.+.+
T Consensus 193 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 193 ERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 998765 3345667778888899999999999988765
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.94 E-value=1.1e-06 Score=99.25 Aligned_cols=244 Identities=10% Similarity=-0.007 Sum_probs=150.5
Q ss_pred HHHHhcCChhHHHHhhhh------cc-HH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004114 358 NNCKHEDDFAEASRSSQN------NG-TL---EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALE 427 (773)
Q Consensus 358 ~~y~k~g~~~~A~~v~~~------~~-~~---~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le 427 (773)
.+....|+.+.|...+.. +. .. .....+...|++++|++.++++.+.. +-+...+..+..++.+.|+++
T Consensus 126 ~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 126 EAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence 333566777777664311 11 00 11345566777777777777776653 224556666677777777777
Q ss_pred HHHHHHHHHHHhCCCCCH-------HHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHH
Q 004114 428 EAKAVHEHVERLLSPLRV-------STYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVD 497 (773)
Q Consensus 428 ~A~~l~~~m~k~G~~pd~-------~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~ 497 (773)
+|.+++..+.+.+..++. .+|..++....+..+.+...++++.+++ .+.....++..++...|+.++|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777776543221 1233334444444455666666666543 366667777777777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCC
Q 004114 498 IFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PME 576 (773)
Q Consensus 498 Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~ 576 (773)
++++..+. .||.. ..++.+....++.+++.+..+...+. .+-|...+.++-.++.+.+++++|.+.|+.+ ...
T Consensus 285 ~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 285 IILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 77777663 34442 11233334557777777777777654 2234455667777777788888888887776 556
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 577 PDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 577 Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
|+..++..|..++.+.|+.++|..+++.-..+
T Consensus 359 P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777777888877777777655443
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.94 E-value=5e-07 Score=111.83 Aligned_cols=257 Identities=6% Similarity=-0.105 Sum_probs=197.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhh------hccHHH--HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQ------NNGTLE--QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQAC 420 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~------~~~~~~--LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~ 420 (773)
+..++..|-.++.. ++.++|...+. ...... +...+.+.|++++|+..|+++... .|+...+..+..++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 56677777777776 78888887421 111112 344556899999999999998654 45555666777788
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh--cCCHhHHHHHHHHHHHcCChHHHHHH
Q 004114 421 GDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT--ERDLTSWDTMITGFAKNGLGEDAVDI 498 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~--~~d~~tyn~LI~ay~~~G~~deAl~L 498 (773)
.+.|++++|..++...++.. +.....+..+...+.+.|++++|+..|++.. .|+...|..+...+.+.|+.++|+..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 89999999999999998865 2233344444455556799999999999887 47888999999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCC
Q 004114 499 FSQFKQAGLKPDD-QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PME 576 (773)
Q Consensus 499 f~eM~~~Gv~Pd~-~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~ 576 (773)
|++.... .|+. ..+..+-.++...|+.++|+.+|+...+. -+-+...+..+..+|.+.|++++|+..|++. .+.
T Consensus 632 l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 632 LRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999885 4654 45677777899999999999999988664 2235678889999999999999999999987 666
Q ss_pred CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 577 PDV-DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 577 Pd~-~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
|+. .+.-..-....+..+++.|.+.++....+.|...
T Consensus 708 P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 708 DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 763 4444455556667778888888888888887765
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=1.3e-07 Score=108.01 Aligned_cols=215 Identities=16% Similarity=0.121 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhCCChH-HHHH
Q 004114 390 KVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL--SPLRVSTYNGILKMYSECDSMD-DAFS 466 (773)
Q Consensus 390 ~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G--~~pd~~tynaLI~ay~k~G~l~-eA~~ 466 (773)
+..+|+.+|.+.... +.=+..+...+-++|...++.++|+++|+.+.+.- ..-+..+|.++|--+-+.=.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 467889999885443 33344677788889999999999999999988762 1225667777765444321111 1222
Q ss_pred HHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC
Q 004114 467 VFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP 545 (773)
Q Consensus 467 lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P 545 (773)
+.+.+ .-...||.++-.+|...++.+.|++.|++..+ +.| ...+|+.+-.-+.....+|.|+..|... +..
T Consensus 413 Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A-----l~~ 484 (638)
T KOG1126|consen 413 LIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA-----LGV 484 (638)
T ss_pred HHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh-----hcC
Confidence 32222 23568999999999999999999999998877 456 5678888877777788888998888654 456
Q ss_pred CcchhhhH---HHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 546 SMKHYVSI---VDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 546 d~~tyn~L---I~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
|..+|+++ --.|.|.++++.|+-.|.+. .+-| +.++...+...+.+.|+.|+|.+++++...++|.++
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 77788765 45688999999999999877 5666 466777777888889999999999999999998885
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.88 E-value=2.4e-06 Score=96.75 Aligned_cols=257 Identities=11% Similarity=0.027 Sum_probs=181.7
Q ss_pred CCCHHH-HHHHHHHHHhcCChhHHHHhhhh------c-c-HHH--HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004114 347 IQNGMM-ASQVLNNCKHEDDFAEASRSSQN------N-G-TLE--QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQ 415 (773)
Q Consensus 347 ~pd~~~-~n~LI~~y~k~g~~~~A~~v~~~------~-~-~~~--LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~ 415 (773)
.|+..+ +-....++...|+.+.|...+.. . . ... ....+.+.|+++.|++.++++.+.. +-+..++..
T Consensus 114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~l 192 (409)
T TIGR00540 114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKL 192 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 454433 33445777888999999886422 1 1 111 3566677999999999999999874 225667889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHH-------HHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHH
Q 004114 416 LMQACGDAKALEEAKAVHEHVERLLSPLRVST-------YNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITG 485 (773)
Q Consensus 416 LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~t-------ynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~a 485 (773)
+..++...|++++|.+++..+.+.+....... +..+++.-......+...++++..++ .+...+-.+...
T Consensus 193 l~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~ 272 (409)
T TIGR00540 193 AEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEH 272 (409)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999875433222 11112111222334455555655553 388899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCC
Q 004114 486 FAKNGLGEDAVDIFSQFKQAGLKPDDQIF---IGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY 562 (773)
Q Consensus 486 y~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty---~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~ 562 (773)
+...|+.++|++++++..+. .||.... ..........++.+.+.+.++...+...-.|+.....+|-..+.+.|+
T Consensus 273 l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~ 350 (409)
T TIGR00540 273 LIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE 350 (409)
T ss_pred HHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc
Confidence 99999999999999999885 3554421 112222234577888888888776642222221455578888999999
Q ss_pred HHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004114 563 LDEALEFIEK--M-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 563 l~eA~~lf~~--M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~ 606 (773)
+++|.+.|+. . ...|+..++..+...+.+.|+.++|.++++...
T Consensus 351 ~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999993 3 668999999999999999999999999888754
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=1.7e-07 Score=106.91 Aligned_cols=172 Identities=14% Similarity=0.095 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ-IFIGVFSA 520 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~-Ty~~LL~a 520 (773)
..+|.++-.+|.-.++.+.|++.|++...- ...+|+.+-.-+.....+|+|+.-|+..+. +.|+.. +|-.|-..
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTV 498 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhh
Confidence 345555555555555555555555544421 334444444444445555555555544322 222221 33334444
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhH
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLEL 597 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~ 597 (773)
|.+.++++.|+-+|.+.. .+-| +.+...++...+-+.|+.|+|++++++. -+.| |...--.....+...++.++
T Consensus 499 y~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred eeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 445555555555544332 2333 2333334444445555555555555544 1111 22211122223333444455
Q ss_pred HHHHHHHHHHcCCCCchHHHHcCC
Q 004114 598 GDRCAEIVEQLDPSRLNEKSKAGL 621 (773)
Q Consensus 598 A~~~~e~m~el~p~~~~~y~~aG~ 621 (773)
|...+|+++++-|++..++...|+
T Consensus 576 al~~LEeLk~~vP~es~v~~llgk 599 (638)
T KOG1126|consen 576 ALQELEELKELVPQESSVFALLGK 599 (638)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHH
Confidence 555555555555555444444333
No 36
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.80 E-value=6.3e-06 Score=100.33 Aligned_cols=134 Identities=14% Similarity=0.062 Sum_probs=95.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcC----CCCCcchhhhHHHHHH
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYG----IVPSMKHYVSIVDMLG 558 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~G----i~Pd~~tyn~LI~~y~ 558 (773)
|-++...|++.+|++.|+.|...+.+.-..+--.+.++|...+..++|..+|..+....+ ..++......|.-+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 445667788888888888888887654445677888888888888888888888765422 1234444567888888
Q ss_pred hCCCHHHHHHHHHhCC-CC---------------CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 559 STGYLDEALEFIEKMP-ME---------------PDV-DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 559 r~G~l~eA~~lf~~M~-~~---------------Pd~-~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
..+++++|..+++.+. .. ||- .....++..+...|++..|++.++.+....|.+..+.
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~ 453 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLR 453 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 8888888888888871 01 222 2334455667788888888888888888888886443
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.76 E-value=2.7e-06 Score=96.07 Aligned_cols=220 Identities=12% Similarity=0.046 Sum_probs=140.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHH--HHHHHHHHhCCChHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTY--NGILKMYSECDSMDDAF 465 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~ty--naLI~ay~k~G~l~eA~ 465 (773)
.|++++|.+++.+..+..-. ....|.....+..+.|+.+.|.+.+.++.+. .|+...+ ......+...|+.+.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 58888888777665443211 1223333344446778888888888887764 3443222 23356777788888888
Q ss_pred HHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHcCCChHHHHHHHH
Q 004114 466 SVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD-------QIFIGVFSACSALGDVVEGMLHFE 535 (773)
Q Consensus 466 ~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~-------~Ty~~LL~a~~~~G~~deA~~if~ 535 (773)
..++++.+ | +......+...|.+.|++++|++++.++.+.+..++. .+|..++.......+.+....+++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88887764 2 5667777788888888888888888888877655332 234444444444455555666666
Q ss_pred HHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch
Q 004114 536 SMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 536 ~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~ 614 (773)
.+.+. .+.+.....++...+.+.|+.++|.+++++. ...||... .++.+....++.+.+...++.+.+..|+++.
T Consensus 254 ~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~ 329 (398)
T PRK10747 254 NQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPL 329 (398)
T ss_pred hCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHH
Confidence 66443 3446667777788888888888888887766 33344422 1233434557777777777777777887764
No 38
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.70 E-value=1.8e-06 Score=98.99 Aligned_cols=227 Identities=14% Similarity=0.123 Sum_probs=172.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHh-----CCC-C-CHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQ-----C-ISVDLPTF-SQLMQACGDAKALEEAKAVHEHVERL-----LSP-L-RVS 446 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~-----G-v~Pd~~ty-~~LL~a~~~~g~le~A~~l~~~m~k~-----G~~-p-d~~ 446 (773)
|...|...|+++.|+.+++..++. | ..|...+. ..+-..|...+.+++|..+|+.++.. |-. | -+.
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 788999999999999999887654 2 12333332 33556777889999999999998764 321 1 245
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc----------CCHh-HHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCH-
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE----------RDLT-SWDTMITGFAKNGLGEDAVDIFSQFKQA---GLKPDD- 511 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~----------~d~~-tyn~LI~ay~~~G~~deAl~Lf~eM~~~---Gv~Pd~- 511 (773)
+++.|-.+|.+.|++++|...+++..+ +.+. -.+.++..|+..+++++|..++....+. -+.++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 677788899999999999988876542 1232 4677888899999999999999876542 233443
Q ss_pred ---HHHHHHHHHHHcCCChHHHHHHHHHHHHhc---CC--CC-CcchhhhHHHHHHhCCCHHHHHHHHHhC--------C
Q 004114 512 ---QIFIGVFSACSALGDVVEGMLHFESMSKDY---GI--VP-SMKHYVSIVDMLGSTGYLDEALEFIEKM--------P 574 (773)
Q Consensus 512 ---~Ty~~LL~a~~~~G~~deA~~if~~M~~~~---Gi--~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M--------~ 574 (773)
.+++.|-..|-+.|++++|+++|++..... +- .+ ....++-|-..|.+.+...+|.++|.+- +
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 478999999999999999999999876432 11 12 2456778888999999999999998875 2
Q ss_pred CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 575 MEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 575 ~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
..|+ ..+|..|...|...|++|.|.++.+.+..
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3455 47899999999999999999998887764
No 39
>PRK12370 invasion protein regulator; Provisional
Probab=98.66 E-value=5.5e-06 Score=97.56 Aligned_cols=210 Identities=10% Similarity=-0.041 Sum_probs=153.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH---------hcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Q 004114 389 GKVKEAIEVLGLLEKQCISVDL-PTFSQLMQACG---------DAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458 (773)
Q Consensus 389 G~~~eAl~lf~~M~~~Gv~Pd~-~ty~~LL~a~~---------~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~ 458 (773)
+.+++|+++|++..+. .|+- ..|..+..++. ..+++++|...+++.++.. +-+..++..+-.++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3467999999998875 4543 34544444333 2245889999999998864 33677888888889999
Q ss_pred CChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCChHHHHHHH
Q 004114 459 DSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ-IFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 459 G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~-Ty~~LL~a~~~~G~~deA~~if 534 (773)
|++++|+..|++..+ | +...|..+...|...|++++|+..+++..+.. |+.. .+..++.++...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999998774 4 56678888999999999999999999998854 5432 2333444566789999999999
Q ss_pred HHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 535 ESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVD-VWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 535 ~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~-ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
.++.+. ..|+ ...+..+..+|...|+.++|.+.+.++ +..|+.. .++.|...++..| +.|...++.+.+
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 887654 2343 445677788889999999999999987 4445543 4445555667666 467666666554
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.64 E-value=2e-07 Score=108.74 Aligned_cols=91 Identities=16% Similarity=0.225 Sum_probs=84.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC
Q 004114 396 EVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERD 475 (773)
Q Consensus 396 ~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d 475 (773)
.++..|...|+.|+.+||.++|.-||..|+++.|- +|..|.-+.++....+++.++.+...+++.+.|. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56788999999999999999999999999999999 9999998888889999999999999999998887 788
Q ss_pred HhHHHHHHHHHHHcCChHH
Q 004114 476 LTSWDTMITGFAKNGLGED 494 (773)
Q Consensus 476 ~~tyn~LI~ay~~~G~~de 494 (773)
..||+.|..+|..+|++..
T Consensus 83 aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred hhHHHHHHHHHHhccchHH
Confidence 8999999999999999865
No 41
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.61 E-value=8.1e-07 Score=103.74 Aligned_cols=81 Identities=12% Similarity=0.037 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHH----------HHHHHHHcCCHHHHHHHHHHHHHCC
Q 004114 336 NEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLE----------QLDGLVKEGKVKEAIEVLGLLEKQC 405 (773)
Q Consensus 336 ~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~----------LI~a~~~~G~~~eAl~lf~~M~~~G 405 (773)
+.+..+...|+.|+-+||..||.-||..|+++.|- +|.++.+.+ ++.+..++++.+.|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34667788999999999999999999999999998 666665543 556666666665554
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH
Q 004114 406 ISVDLPTFSQLMQACGDAKALEE 428 (773)
Q Consensus 406 v~Pd~~ty~~LL~a~~~~g~le~ 428 (773)
.|-+.||+.|+.+|...||+..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH
Confidence 6788899999999999998644
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.58 E-value=5.5e-05 Score=92.24 Aligned_cols=267 Identities=10% Similarity=0.013 Sum_probs=199.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhhhcc-------HH----HHHHHHHHc---------CC---HHHHHHHHHHHHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQNNG-------TL----EQLDGLVKE---------GK---VKEAIEVLGLLEK 403 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~-------~~----~LI~a~~~~---------G~---~~eAl~lf~~M~~ 403 (773)
+-+...+..++.+..+.|-...|.++..... .. ..+.-.++. .+ .+.|+.-++.+..
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 3456777888888888888888888532111 00 122222222 22 3446666666554
Q ss_pred C-CCCCCH-H----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---
Q 004114 404 Q-CISVDL-P----TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER--- 474 (773)
Q Consensus 404 ~-Gv~Pd~-~----ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~--- 474 (773)
. +-.|.. . ...-.|-++...++..+|.+.++.|...|.+.-..+--++.++|...++.++|+.+|.++...
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 2 222322 1 223456678889999999999999999987766668889999999999999999999998532
Q ss_pred ------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHHcCCChHHHHHHH
Q 004114 475 ------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG-------------LKPDDQ-IFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 475 ------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G-------------v~Pd~~-Ty~~LL~a~~~~G~~deA~~if 534 (773)
+......|.-+|...+++++|..++++|.+.- .-||-. .+..++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34446789999999999999999999998731 113333 3455667788999999999999
Q ss_pred HHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 535 ESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 535 ~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
+.+... -+-+......+.+.+...|+..+|++.++.. .+.|+ ..+...+..+....+++..|+.+.+.+.++.|++
T Consensus 440 e~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 440 EDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 999664 4457888999999999999999999999776 44564 6677788888889999999999999999999999
Q ss_pred chH
Q 004114 613 LNE 615 (773)
Q Consensus 613 ~~~ 615 (773)
...
T Consensus 518 ~~~ 520 (822)
T PRK14574 518 IPS 520 (822)
T ss_pred hhH
Confidence 643
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=7.3e-05 Score=79.56 Aligned_cols=236 Identities=12% Similarity=0.133 Sum_probs=147.8
Q ss_pred HHHHHHHHHHhcCChhHHHHhh---------h----hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004114 352 MASQVLNNCKHEDDFAEASRSS---------Q----NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQ 418 (773)
Q Consensus 352 ~~n~LI~~y~k~g~~~~A~~v~---------~----~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~ 418 (773)
+--+|=+.|-+.|.+|.|+++- . ......|-.-|...|-++.|.++|..+.+.+. --....-.|+.
T Consensus 71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~ 149 (389)
T COG2956 71 AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLN 149 (389)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHH
Confidence 3345667777888888888751 1 11112366777778888888888877776542 13345666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHhhcC--C-HhHHHHHHHHHHHcCC
Q 004114 419 ACGDAKALEEAKAVHEHVERLLSPLR----VSTYNGILKMYSECDSMDDAFSVFSNMTER--D-LTSWDTMITGFAKNGL 491 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~G~~pd----~~tynaLI~ay~k~G~l~eA~~lf~~M~~~--d-~~tyn~LI~ay~~~G~ 491 (773)
.|-...++++|.++-..+.+.+-.+. ...|.-|...+.-..+++.|+.++.+..+- . +..--.+-..+...|+
T Consensus 150 IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 150 IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc
Confidence 77778888888888887777654433 223455555555667777888887776632 2 2222234456677788
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHH-
Q 004114 492 GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFI- 570 (773)
Q Consensus 492 ~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf- 570 (773)
+..|.+.++...+.+..--..+...|..+|.+.|+.+++...+.++.+. .+....-..|-+.-....-.+.|...+
T Consensus 230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHH
Confidence 8888888888777654444456677778888888888887777766543 233333344444444444445555444
Q ss_pred HhCCCCCCHHHHHHHHHHHHH
Q 004114 571 EKMPMEPDVDVWEKLMNLCRM 591 (773)
Q Consensus 571 ~~M~~~Pd~~ty~~LI~a~~~ 591 (773)
+.+.-+|+...+..||..-..
T Consensus 307 ~Ql~r~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 307 RQLRRKPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHhhCCcHHHHHHHHHhhhc
Confidence 344557887777777776443
No 44
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=4.9e-06 Score=88.09 Aligned_cols=229 Identities=13% Similarity=0.122 Sum_probs=187.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Q 004114 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458 (773)
Q Consensus 379 ~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~ 458 (773)
..|-.+|.+.|.+.+|...|..-++. .|-+.||..|-++|-+....+.|+.++.+-++. ++-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34899999999999999999988876 567779999999999999999999999988875 344554445577888889
Q ss_pred CChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 004114 459 DSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFE 535 (773)
Q Consensus 459 G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~ 535 (773)
+..++|.++++...+- ++.+..++..+|.-.++++-|+..|+++++.|+. +...|..+--+|.-.+.+|-++--|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999988753 6677777888999999999999999999999986 56788888888999999999998887
Q ss_pred HHHHhcCCCCC--cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 536 SMSKDYGIVPS--MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 536 ~M~~~~Gi~Pd--~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
+.... --.|+ ..+|-.|-......|++..|.+.|.-. .-.| ....++.|.-.-.+.|+++.|..++.-.....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 76543 22233 456777777788899999999999866 2233 3678888887778999999999988888877775
Q ss_pred C
Q 004114 612 R 612 (773)
Q Consensus 612 ~ 612 (773)
-
T Consensus 462 m 462 (478)
T KOG1129|consen 462 M 462 (478)
T ss_pred c
Confidence 4
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=2.2e-05 Score=85.89 Aligned_cols=227 Identities=16% Similarity=0.214 Sum_probs=166.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------------HHHHHHHH--------HHHH-------hcCC
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVD---------------------LPTFSQLM--------QACG-------DAKA 425 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd---------------------~~ty~~LL--------~a~~-------~~g~ 425 (773)
...|.+.|+++.|+++++-+.+..-+.- ...|.-+. .+.. ..|+
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCc
Confidence 4568899999999999988865532211 11111110 0010 1367
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh---cCCHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004114 426 LEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT---ERDLTSWDTMITGFAKNGLGEDAVDIFSQF 502 (773)
Q Consensus 426 le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~---~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM 502 (773)
+++|.+.+.+.+...-.-....||+ --.+-+.|++++|+..|-++. ..++.+.--+...|-...+...|++++-+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 8888888888776432222223332 223566789999999987765 346666667788888888999999998554
Q ss_pred HHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHH
Q 004114 503 KQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVD 580 (773)
Q Consensus 503 ~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ 580 (773)
. .+.| |...+.-|...|-+.|+-.+|..++..-.+ =++.+.++..-|...|.....+++|...|++. -+.|+..
T Consensus 585 ~--slip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 585 N--SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred c--ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 3 3445 566788888999999999999887765433 25668889888999999999999999999988 5689999
Q ss_pred HHHHHHHHH-HHcCChhHHHHHHHHHHHcCCCCc
Q 004114 581 VWEKLMNLC-RMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 581 ty~~LI~a~-~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
-|..||..| .+.|++.+|..+++.+.+..|.++
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 999999866 678999999999999999999886
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.50 E-value=3.1e-05 Score=83.94 Aligned_cols=221 Identities=13% Similarity=0.053 Sum_probs=158.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 384 GLVKEGKVKEAIEVLGLLEKQC-ISVD--LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 384 a~~~~G~~~eAl~lf~~M~~~G-v~Pd--~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
.....+..+.++.-+.+++... +.|+ ...|..+-.++...|+.++|...|...++.. +.+...|+.+-..|...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 3344567788888888888642 2333 3456677777889999999999999998864 3367899999999999999
Q ss_pred hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 461 l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+++|+..|++..+ | +..+|..+..++...|++++|++.|++..+. .|+.......+..+...++.++|...|.+.
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999998874 4 5678888999999999999999999998874 455432222222344567899999999765
Q ss_pred HHhcCCCCCcchhhhHHHHHHhCCCHHHH--HHHHHh-CCC----CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 538 SKDYGIVPSMKHYVSIVDMLGSTGYLDEA--LEFIEK-MPM----EP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 538 ~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA--~~lf~~-M~~----~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
... ..|+...+ .++.. ..|++.++ .+.+.+ ... .| ....|..|-..+...|++++|...+++..+++
T Consensus 192 ~~~--~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEK--LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hhh--CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 443 33443322 33333 34554433 322221 111 12 24578899999999999999999999999998
Q ss_pred CCC
Q 004114 610 PSR 612 (773)
Q Consensus 610 p~~ 612 (773)
|.+
T Consensus 267 ~~~ 269 (296)
T PRK11189 267 VYN 269 (296)
T ss_pred Cch
Confidence 754
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.50 E-value=2.8e-05 Score=88.08 Aligned_cols=240 Identities=13% Similarity=0.022 Sum_probs=164.4
Q ss_pred HHHHH--HHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 381 QLDGL--VKEGKVKEAIEVLGLLEKQCISVDL-PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 381 LI~a~--~~~G~~~eAl~lf~~M~~~Gv~Pd~-~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
+..|+ ...|+++.|.+.+.+..+. .|+. ..+-....+....|+.+.|.+.+....+.-..+...+.-.....+..
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 44444 4689999999999887665 4553 34445566677889999999999998875433333445556888889
Q ss_pred CCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HcCCChHHHH
Q 004114 458 CDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSAC---SALGDVVEGM 531 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~---~~~G~~deA~ 531 (773)
.|+.+.|...++.+.+ | +...+..+...|...|++++|.+++.++.+.++.+.......-+.++ ...+..+++.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999984 3 67788899999999999999999999999987643332211111221 2222223333
Q ss_pred HHHHHHHHhc--CCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHH--HHcCChhHHHHHHHHH
Q 004114 532 LHFESMSKDY--GIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVW-EKLMNLC--RMHGNLELGDRCAEIV 605 (773)
Q Consensus 532 ~if~~M~~~~--Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty-~~LI~a~--~~~G~~e~A~~~~e~m 605 (773)
..+..+.+.. ..+.+...+.++...+...|+.++|.+++++. ...||.... -.++..+ ...++.+.+.+.++..
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 3444444331 01237788899999999999999999999987 445554321 0123322 3356778888889989
Q ss_pred HHcCCCCc--hHHHHcCCc
Q 004114 606 EQLDPSRL--NEKSKAGLV 622 (773)
Q Consensus 606 ~el~p~~~--~~y~~aG~~ 622 (773)
.+..|+++ ......|.+
T Consensus 326 lk~~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 326 AKNVDDKPKCCINRALGQL 344 (409)
T ss_pred HHhCCCChhHHHHHHHHHH
Confidence 99999998 544344433
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=98.49 E-value=1.6e-05 Score=93.71 Aligned_cols=208 Identities=9% Similarity=-0.063 Sum_probs=147.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSV 467 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~l 467 (773)
.+++++|+..+++..+.. +-+...+..+-.++...|++++|...+++.++.. +.+...+..+..+|...|+.++|+..
T Consensus 317 ~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 345899999999998863 2256677788788889999999999999999975 33567788889999999999999999
Q ss_pred HHHhhc--CC-HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCC
Q 004114 468 FSNMTE--RD-LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGI 543 (773)
Q Consensus 468 f~~M~~--~d-~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi 543 (773)
|++..+ |+ ...+..++..+...|++++|+..++++.+.. .|+ ...+..+-.++...|+.++|...+.++...
T Consensus 395 ~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--- 470 (553)
T PRK12370 395 INECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--- 470 (553)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---
Confidence 999874 43 2334445556777899999999999987653 344 334566677788999999999999887543
Q ss_pred CCC-cchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004114 544 VPS-MKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 544 ~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~ 606 (773)
.|+ ....+.|...|+..| ++|...++.+ ...+.-.-+..++. .-+|+-+.+... +.+.
T Consensus 471 ~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVL--VAHGEAIAEKMW-NKFK 533 (553)
T ss_pred cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHH--HHHhhhHHHHHH-HHhh
Confidence 343 334445556667777 4777766665 22343334444444 445665544433 4444
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.46 E-value=3.3e-05 Score=82.08 Aligned_cols=220 Identities=11% Similarity=0.140 Sum_probs=164.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCC--HHHHHHHHHHHHhCCChHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL-SPLR--VSTYNGILKMYSECDSMDDA 464 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G-~~pd--~~tynaLI~ay~k~G~l~eA 464 (773)
+...++|+++|-+|.+.. +-+..+--+|-+.+-+.|..|.|.++|+-+.++- +.-+ ....-.|-.-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467899999999998852 1123344567777889999999999999998862 2111 23445577778999999999
Q ss_pred HHHHHHhhcCCH---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 465 FSVFSNMTERDL---TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ----IFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 465 ~~lf~~M~~~d~---~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~----Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+.+|..+.+.+. ..---|+..|-...+|++|+++-+++.+.+-.+..+ -|.-|...+.-..+++.|+.++.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999886433 456678999999999999999999999876655443 2334444455567889999888876
Q ss_pred HHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 538 SKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 538 ~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
... .|. +..--.|-+.+...|++..|.+.++.. .-.|+ ..+...|..+|...|+.+.+...+..+.+..+.
T Consensus 207 lqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 207 LQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred Hhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 543 343 333345567888999999999999887 33454 357788999999999999998888877766543
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.46 E-value=0.00024 Score=77.54 Aligned_cols=219 Identities=12% Similarity=0.046 Sum_probs=148.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCH-------HHHHHHHHH
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRV-------STYNGILKM 454 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~-------~tynaLI~a 454 (773)
..-+...|+...|..-++++.+.+-. ..........+|.+.|++..+..+...|.+.|.--+. .+|..+++=
T Consensus 160 arlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q 238 (400)
T COG3071 160 ARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ 238 (400)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554322 3344555556666666666666666666665544332 244444444
Q ss_pred HHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 004114 455 YSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM 531 (773)
Q Consensus 455 y~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~ 531 (773)
....+..+.-...++..+. .+...--+++.-+.+.|+.++|.++..+-.+.+..|...+ +-.+.+-++.+.-.
T Consensus 239 ~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~ 314 (400)
T COG3071 239 ARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLI 314 (400)
T ss_pred HhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHH
Confidence 4444444444444444442 2455566778888899999999999999998888777333 33455777777777
Q ss_pred HHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 532 LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 532 ~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
+..+.-.+..+-.| ..+.+|=..|.+.+.|.+|.+.|+.. ...|+..+|..+-.++.+.|+.++|..+.+....
T Consensus 315 k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 315 KAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77777666655555 66778888899999999999999976 7789999999999999999999999888876553
No 51
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.43 E-value=0.00022 Score=84.44 Aligned_cols=294 Identities=14% Similarity=0.104 Sum_probs=207.1
Q ss_pred HHHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhh---------hhccHHHHHHHHHHcCCHHHHHHH
Q 004114 327 SRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSS---------QNNGTLEQLDGLVKEGKVKEAIEV 397 (773)
Q Consensus 327 a~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~---------~~~~~~~LI~a~~~~G~~~eAl~l 397 (773)
+++.++.+..+...+++-. +-....|..|-..|-..|+++++.... ++.-|..+-.-..+.|+++.|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3455566666666665543 344567889999999999999998842 333344467777888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHH----HHHHHhCCChHHHHHHHHHhhc
Q 004114 398 LGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGI----LKMYSECDSMDDAFSVFSNMTE 473 (773)
Q Consensus 398 f~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaL----I~ay~k~G~l~eA~~lf~~M~~ 473 (773)
|.+..... +++...+---+..|-+.|+...|+.-|.+|.....+.|..-.-.+ +..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998863 334444444566688899999999999999987544444434333 4556667777889988887764
Q ss_pred --C---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH--------------------------HHHHHHHH
Q 004114 474 --R---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF--------------------------IGVFSACS 522 (773)
Q Consensus 474 --~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty--------------------------~~LL~a~~ 522 (773)
. +...+++++..|.+...++.|.....++.....++|..-+ .-++-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2 5567899999999999999999999988872222222111 11222233
Q ss_pred cCCChHHHHHHHHHHHHhcC--CCCCcchhhhHHHHHHhCCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChhH
Q 004114 523 ALGDVVEGMLHFESMSKDYG--IVPSMKHYVSIVDMLGSTGYLDEALEFIEKM---PMEPDVDVWEKLMNLCRMHGNLEL 597 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~G--i~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M---~~~Pd~~ty~~LI~a~~~~G~~e~ 597 (773)
+....+....+......+ . ..-++..|.-+.++|...|++.+|+++|..+ +..-+...|-.+..+|...|..+.
T Consensus 389 ~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 333333333333333332 3 3335678889999999999999999999998 222357899999999999999999
Q ss_pred HHHHHHHHHHcCCCCc-------hHHHHcCCch
Q 004114 598 GDRCAEIVEQLDPSRL-------NEKSKAGLVP 623 (773)
Q Consensus 598 A~~~~e~m~el~p~~~-------~~y~~aG~~~ 623 (773)
|.+.++++..+.|++. ..+...|..+
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~E 500 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHE 500 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHH
Confidence 9999999999999985 3455556554
No 52
>PF12854 PPR_1: PPR repeat
Probab=98.42 E-value=3.2e-07 Score=66.34 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=26.7
Q ss_pred hCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 439 LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 439 ~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
+|+.||..||++||++||+.|++++|+++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888888774
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.40 E-value=7.6e-05 Score=85.86 Aligned_cols=223 Identities=13% Similarity=0.108 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHhhhhccHH-----------------HHHHHHHHcCCHHHHHHHHHHHHHC-----C-CC
Q 004114 351 MMASQVLNNCKHEDDFAEASRSSQNNGTL-----------------EQLDGLVKEGKVKEAIEVLGLLEKQ-----C-IS 407 (773)
Q Consensus 351 ~~~n~LI~~y~k~g~~~~A~~v~~~~~~~-----------------~LI~a~~~~G~~~eAl~lf~~M~~~-----G-v~ 407 (773)
.|...|..+|...|++++|..++.+.-.. .+-..|...+++++|+.+|.+++.- | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46667999999999999999975322111 1556788899999999999999742 2 22
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CC-CCCHH-HHHHHHHHHHhCCChHHHHHHHHHhhc------
Q 004114 408 VD-LPTFSQLMQACGDAKALEEAKAVHEHVERL-----LS-PLRVS-TYNGILKMYSECDSMDDAFSVFSNMTE------ 473 (773)
Q Consensus 408 Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-----G~-~pd~~-tynaLI~ay~k~G~l~eA~~lf~~M~~------ 473 (773)
|. +.++..|-.+|.+.|++++|...++...+. |. .+.+. ..+.+...|+-.+++++|+.++....+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 32 347778888899999999998888776543 22 23333 456677778889999999998875542
Q ss_pred -C-C---HhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHH---
Q 004114 474 -R-D---LTSWDTMITGFAKNGLGEDAVDIFSQFKQA------GLKPD-DQIFIGVFSACSALGDVVEGMLHFESMS--- 538 (773)
Q Consensus 474 -~-d---~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~------Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~--- 538 (773)
+ + ..+++.|-..|...|++++|.++|++.... +..+. ...++.|-.+|.+.+...+|.++|.+..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 1 2 347999999999999999999999998653 12233 3467888889999999999988887532
Q ss_pred HhcCCC-CC-cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 539 KDYGIV-PS-MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 539 ~~~Gi~-Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+.+|.. |+ ..+|..|...|.+.|++++|.++.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 443432 23 478889999999999999999998765
No 54
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.29 E-value=8.6e-06 Score=88.00 Aligned_cols=222 Identities=15% Similarity=0.123 Sum_probs=148.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL-RVSTYNGILKMYSECD 459 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~p-d~~tynaLI~ay~k~G 459 (773)
+.+++...|..+.++ .+..... .|.......+...+....+-+.+..-+.+.+...... +..+......+|...|
T Consensus 41 ~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 41 QYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 677788888877554 3333332 5666555444444443344455544444333333222 2233333345677789
Q ss_pred ChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHH
Q 004114 460 SMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA----LGDVVEGMLHFE 535 (773)
Q Consensus 460 ~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~----~G~~deA~~if~ 535 (773)
++++|++++.+. .+.......|..|.+.++++.|.+.++.|.+. ..| .|..-|..|+.. ...+.+|..+|+
T Consensus 117 ~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~ 191 (290)
T PF04733_consen 117 DYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFE 191 (290)
T ss_dssp HHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 999999998876 56777778889999999999999999999875 334 445555555543 346899999999
Q ss_pred HHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCC
Q 004114 536 SMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNL-ELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 536 ~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~-e~A~~~~e~m~el~p~~ 612 (773)
++... ..+++.+.+.+..++...|++++|.+++.+. ...| +..+...+|.+....|+. +.+.+.+..+....|++
T Consensus 192 El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 192 ELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 99665 4578888999999999999999999999875 3344 466777788888888877 66788889999888887
Q ss_pred c
Q 004114 613 L 613 (773)
Q Consensus 613 ~ 613 (773)
+
T Consensus 270 ~ 270 (290)
T PF04733_consen 270 P 270 (290)
T ss_dssp H
T ss_pred h
Confidence 5
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.28 E-value=0.0014 Score=75.33 Aligned_cols=252 Identities=15% Similarity=0.141 Sum_probs=183.9
Q ss_pred HcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHhCCC
Q 004114 387 KEGKVKEAIEVLGL----LEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR--VSTYNGILKMYSECDS 460 (773)
Q Consensus 387 ~~G~~~eAl~lf~~----M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd--~~tynaLI~ay~k~G~ 460 (773)
.+|.++....++++ +...|+..+...|-.=..+|-+.|..-.+..|....+..|++-. -.||..-.+.|.+.+.
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 34555555555443 23445666666666666666666666666666666665555422 3466666666777777
Q ss_pred hHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 461 l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
++-|+.+|....+ .+...|...+..=-.+|..++...+|.+.... ++-..+.|.......-.+|++..|+.++...
T Consensus 532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~a 610 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQA 610 (913)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 8888888876653 36677888877777789999999999998875 4344566777777888899999999999887
Q ss_pred HHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 538 SKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 538 ~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
... .+-+...|-+-+........+++|..+|.+. ...|+..+|..-+..-...++.++|.++++...+..|+....|
T Consensus 611 f~~--~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~ 688 (913)
T KOG0495|consen 611 FEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLW 688 (913)
T ss_pred HHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHH
Confidence 654 2235788999999999999999999999988 5568889999989988999999999999999999999998888
Q ss_pred HHcCCchhhhhHH-----HHHhcccccccc
Q 004114 617 SKAGLVPVNASEL-----AKEKENKKLASQ 641 (773)
Q Consensus 617 ~~aG~~~~~v~~l-----mk~~~l~k~~~~ 641 (773)
...|.+......+ .-..|+++.|.+
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 8888876443322 222556666655
No 56
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.00024 Score=78.68 Aligned_cols=226 Identities=12% Similarity=0.087 Sum_probs=110.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhCC
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS--PLRVSTYNGILKMYSECD 459 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~--~pd~~tynaLI~ay~k~G 459 (773)
..++-.....++++.-...+...|+.-....-+....+.-...+++.|..+|+++.+... .-|..+|..++-.--.+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 334444445555555555555555443333323333333455667777777777766521 013444444432221111
Q ss_pred Ch-HHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004114 460 SM-DDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 460 ~l-~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
++ --|..++.- .+=-..|..++..-|.-.++.++|...|++.++.+-+ ....|+.+-.-|....+...|..-+....
T Consensus 314 kLs~LA~~v~~i-dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVSNI-DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHh-ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 11 111111111 1112233444444555555666666666665553321 23345555555666666666665555543
Q ss_pred HhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 539 KDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 539 ~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
+- .+.|-..|-.|-.+|.-.+...-|+-.|.+. .++| |..+|.+|-..|.+.+++++|+++++........
T Consensus 392 di--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 392 DI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred hc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 32 2234555556666666666666666666555 3444 4556666666666666666666666655555433
No 57
>PF12854 PPR_1: PPR repeat
Probab=98.23 E-value=1.3e-06 Score=63.15 Aligned_cols=32 Identities=31% Similarity=0.608 Sum_probs=21.9
Q ss_pred CCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 542 GIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 542 Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666666
No 58
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.00082 Score=74.63 Aligned_cols=193 Identities=15% Similarity=0.189 Sum_probs=151.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAK 488 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~ 488 (773)
|++++.+-|+-.++-+.|...|+..++.+.. ...+|+.|-.=|....+...|+.-++...+ +|-..|-.|-.+|.-
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 4444555577788899999999999987533 566888888999999999999999987764 588899999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHH
Q 004114 489 NGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEAL 567 (773)
Q Consensus 489 ~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~ 567 (773)
.+++.=|+-.|++... ++| |...|.+|-.+|.+.+++++|++.|.....- | ......+..|.++|-+.++..+|.
T Consensus 411 m~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred hcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999998877 556 5678999999999999999999999988664 2 224578889999999999999998
Q ss_pred HHHHhC-------CC-CCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 568 EFIEKM-------PM-EPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 568 ~lf~~M-------~~-~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
..|++- +. .|. +..---|..-+.+.+++++|.........-+
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 887654 32 231 2222235566788899999887666555443
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.18 E-value=0.00064 Score=74.33 Aligned_cols=238 Identities=15% Similarity=0.098 Sum_probs=191.2
Q ss_pred HHHHHH--HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Q 004114 381 QLDGLV--KEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458 (773)
Q Consensus 381 LI~a~~--~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~ 458 (773)
+..|+. -.|++..|.++..+-.+.+-.| ...|.....|.-..|+.+.+-..+.+..+.--.++..++-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 555554 4799999999999987776443 4567777788889999999999999998875567788899999999999
Q ss_pred CChHHHHHHHHHhh---cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHcCCChH
Q 004114 459 DSMDDAFSVFSNMT---ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD-------QIFIGVFSACSALGDVV 528 (773)
Q Consensus 459 G~l~eA~~lf~~M~---~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~-------~Ty~~LL~a~~~~G~~d 528 (773)
|+.+.|..-.++.. .+....-..+..+|.+.|++.+++.+..+|.+.|+--|. .+|..++.-+...+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999998887665 458889999999999999999999999999999876554 37899999998888888
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 529 EGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 529 eA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
.-...++....+ .+-++..-.+++.-+.++|+.++|.+++++. +-.-|.. -..+-.+.+-++.+.-++.++.-.+
T Consensus 247 gL~~~W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 247 GLKTWWKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHHhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHH
Confidence 878888888665 4556667778999999999999999999876 2222333 1233456677888888888888888
Q ss_pred cCCCCchHHHHcCCch
Q 004114 608 LDPSRLNEKSKAGLVP 623 (773)
Q Consensus 608 l~p~~~~~y~~aG~~~ 623 (773)
..|+++..+...|.+.
T Consensus 323 ~h~~~p~L~~tLG~L~ 338 (400)
T COG3071 323 QHPEDPLLLSTLGRLA 338 (400)
T ss_pred hCCCChhHHHHHHHHH
Confidence 8999887666666654
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.12 E-value=0.00094 Score=72.43 Aligned_cols=197 Identities=12% Similarity=-0.066 Sum_probs=136.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+-..|.+.|+.++|+..|.+..+.. +-+...|..+-..+...|++++|...|+..++... -+..++..+..+|...|+
T Consensus 70 ~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 70 RGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 4556778899999999999888763 23577899999999999999999999999998542 246788888899999999
Q ss_pred hHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 461 l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
+++|++.|+...+ |+-.........+...++.++|+..|.+.... ..|+...+ .+ +....|++.++ ..+..+.
T Consensus 148 ~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~ 222 (296)
T PRK11189 148 YELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NI--VEFYLGKISEE-TLMERLK 222 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HH--HHHHccCCCHH-HHHHHHH
Confidence 9999999998774 33221222222344567899999999776543 23332221 22 22345666554 3555555
Q ss_pred HhcCCCC-----CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCC-CCHHHHHH
Q 004114 539 KDYGIVP-----SMKHYVSIVDMLGSTGYLDEALEFIEKM-PME-PDVDVWEK 584 (773)
Q Consensus 539 ~~~Gi~P-----d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~-Pd~~ty~~ 584 (773)
+.....+ ....|..|-..+.+.|++++|...|++. ... ||-+-+..
T Consensus 223 ~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 223 AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4322222 2357888999999999999999999876 333 45554444
No 61
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.11 E-value=0.00057 Score=79.40 Aligned_cols=245 Identities=14% Similarity=0.177 Sum_probs=139.5
Q ss_pred HHHHhcCChhHHHHhhhh--------ccHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hc----
Q 004114 358 NNCKHEDDFAEASRSSQN--------NGTL-EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACG-DA---- 423 (773)
Q Consensus 358 ~~y~k~g~~~~A~~v~~~--------~~~~-~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~-~~---- 423 (773)
..+...|+.++|+..+.. ..+. .....|.+.|+.++|..+|..+...+ ||-..|-..+..|. -.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 445566777777774311 1111 14556667777777777777777663 44444433333332 11
Q ss_pred -CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh-HHHHHHHHHhhcCCH-hHHHHHHHHHHHcCChHHHHHHHH
Q 004114 424 -KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSM-DDAFSVFSNMTERDL-TSWDTMITGFAKNGLGEDAVDIFS 500 (773)
Q Consensus 424 -g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l-~eA~~lf~~M~~~d~-~tyn~LI~ay~~~G~~deAl~Lf~ 500 (773)
...+...++++++...- |.....--|.-.+..-..+ ..+...+..+..+.+ .+|+.|-..|....+.+-...++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 24566666666665542 2222222222122211112 223333444445554 456666666665555556666666
Q ss_pred HHHHC----C----------CCCCHHHH--HHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-cchhhhHHHHHHhCCCH
Q 004114 501 QFKQA----G----------LKPDDQIF--IGVFSACSALGDVVEGMLHFESMSKDYGIVPS-MKHYVSIVDMLGSTGYL 563 (773)
Q Consensus 501 eM~~~----G----------v~Pd~~Ty--~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l 563 (773)
++... + -.|+...| ..|...|-..|++++|+.++++.+. ..|+ ++.|..-...|-+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCH
Confidence 65432 1 12333333 3444556678888888888887654 3455 56777777788888888
Q ss_pred HHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 564 DEALEFIEKM-PM-EPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 564 ~eA~~lf~~M-~~-~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
.+|.+.++.. .+ .-|..+-+..+..+.+.|++++|+.++.++-+-+
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 8888887766 11 2366777777888888888888888888776544
No 62
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.10 E-value=0.00086 Score=80.06 Aligned_cols=273 Identities=12% Similarity=0.042 Sum_probs=183.7
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhcc-------------------HHHHHHHHHHcCCHHHHHHH
Q 004114 337 EGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNG-------------------TLEQLDGLVKEGKVKEAIEV 397 (773)
Q Consensus 337 ~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~-------------------~~~LI~a~~~~G~~~eAl~l 397 (773)
....+...+-.+.+.+.|.+-..+-..|.+++|...|...- .-.+...+-..++++.|.++
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 33344455555677777888888888888888877431100 00133444455677777777
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC--
Q 004114 398 LGLLEKQCISVDLP-TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER-- 474 (773)
Q Consensus 398 f~~M~~~Gv~Pd~~-ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~-- 474 (773)
|....+. .|.-+ .|--++...-..+.+.+|...+....... ..+..+++-+-..|.+...+..|.+-|+.+.+.
T Consensus 519 Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~ 595 (1018)
T KOG2002|consen 519 YKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTS 595 (1018)
T ss_pred HHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhc
Confidence 7777765 23322 23333211122356677777777666542 224444555556777777777777766655432
Q ss_pred ---CHhHHHHHHHHHH------------HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 475 ---DLTSWDTMITGFA------------KNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 475 ---d~~tyn~LI~ay~------------~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
|+.+--+|-..|. ..+..++|+.+|.+.++..- -+...-+.+--.++..|++.+|..+|..+++
T Consensus 596 ~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 596 TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 3333333333222 23457889999998887532 2455667777788899999999999999988
Q ss_pred hcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 540 DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 540 ~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
. ..-...+|-.|..+|..+|++..|.++|+.. .-+-+..+...|-.++...|.+.+|.+++.....+.|+++.+
T Consensus 675 a--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 675 A--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred H--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence 6 3345578889999999999999999999865 334578889999999999999999999999999999998743
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.09 E-value=0.0011 Score=67.94 Aligned_cols=190 Identities=11% Similarity=0.023 Sum_probs=97.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHH
Q 004114 419 ACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDA 495 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deA 495 (773)
.|...|+...|+.-+++.++.. +-+..+|..+...|-+.|..+.|.+.|++... .+-.+.|..-.-+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3444444444444444444432 11233444444444445555555544443331 1333444444455555555555
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 496 VDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 496 l~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
...|++....-.-|. ..||..+.-+..+.|+.+.|+.+|.+-.+. .| ...+.-.|.....+.|+...|..+++..
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 555555554321111 234544444445566666666666554332 22 2344455666666666767776666665
Q ss_pred --CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 574 --PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 574 --~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
...+...+.-..|..-...|+.+.+.+.-..+.+..|..
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 233566666566666666777776666666666666654
No 64
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.04 E-value=6.6e-06 Score=58.54 Aligned_cols=35 Identities=31% Similarity=0.720 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD 511 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~ 511 (773)
++||+||.+|++.|++++|+++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 65
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00047 Score=75.80 Aligned_cols=214 Identities=12% Similarity=0.107 Sum_probs=163.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSV 467 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~l 467 (773)
+|++++|.+.|++.+..........|++=|. +-..|++++|++.|-.+-.. +.-++.+.--+...|--..+...|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt-~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLT-AEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhccc-HHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 6899999999999987643333344444333 45779999999998776543 223566666778888888899999999
Q ss_pred HHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCC
Q 004114 468 FSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIV 544 (773)
Q Consensus 468 f~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~ 544 (773)
+.+... .|....+-|...|-+.|+-..|+..+-+--+- +.-+..|.-.|..-|....-+++++.+|++.. =+.
T Consensus 581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liq 656 (840)
T KOG2003|consen 581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQ 656 (840)
T ss_pred HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcC
Confidence 987653 38888999999999999999998876554332 34466777788888888888999999998763 488
Q ss_pred CCcchhhhHHHHH-HhCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 545 PSMKHYVSIVDML-GSTGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 545 Pd~~tyn~LI~~y-~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
|+..-|-.||..| .|.|.+.+|+++++.. .+.-|+....-|++.|...|.. ++.+..+.+++.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d~key~~klek~ 722 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-DAKEYADKLEKA 722 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-hHHHHHHHHHHH
Confidence 9999999988765 5789999999999988 4556888999999998888854 466666555543
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.0012 Score=72.25 Aligned_cols=264 Identities=12% Similarity=0.019 Sum_probs=183.0
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHH---------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004114 343 YSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTL---------EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTF 413 (773)
Q Consensus 343 ~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~---------~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty 413 (773)
..-++-++.....+-+.+...|+.+.|...|.-..+. .-..-+.+.|+++....+...+.... +-+...|
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 4456778888889999999999999888865322211 12223457788888877777776542 1223333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh--cC-CHhHHHHHHHHHHHcC
Q 004114 414 SQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT--ER-DLTSWDTMITGFAKNG 490 (773)
Q Consensus 414 ~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~--~~-d~~tyn~LI~ay~~~G 490 (773)
-.-+..+-..++++.|+.+-+..++... -++..+-.=-.++...++.++|.-.|+... .| +..+|.-|+.+|...|
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence 3333334456778888888777766431 122233222355677899999999998654 54 8899999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHc-CCChHHHHHHHHHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHH
Q 004114 491 LGEDAVDIFSQFKQAGLKPDDQIFIGVF-SACSA-LGDVVEGMLHFESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEAL 567 (773)
Q Consensus 491 ~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL-~a~~~-~G~~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~ 567 (773)
++.||+.+-....+. +.-+..|.+.+- ..|.. ...-++|.+++++- ..+.|+ ....+.+.+.+.+.|+.+++.
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~---L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS---LKINPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh---hccCCccHHHHHHHHHHHHhhCccchHH
Confidence 999998887665442 223444554441 23332 23346778877754 345665 355667888899999999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 568 EFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 568 ~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.+++.- ...||....+.|-..++....+.+|...+....+++|.+
T Consensus 459 ~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 459 KLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 999876 567899999999999999999999999999999999987
No 67
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.02 E-value=0.004 Score=71.71 Aligned_cols=223 Identities=13% Similarity=0.092 Sum_probs=95.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSM 461 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l 461 (773)
+.-...+..+++|..+|.+... ..|+..+|.--+..---.+..++|++++++.++. ++.-...|-.+-..+-..+++
T Consensus 625 vKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHH
Confidence 3333444444444444444333 2333333333333333334444444444444432 111122333333334444444
Q ss_pred HHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004114 462 DDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 462 ~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
+.|...|..-.+ | .+..|-.|...=-+.|.+-+|..+|++-+..+-+ +...|...|..=.+.|..+.|..+..+..
T Consensus 702 e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 702 EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444433221 2 2234544444444555555555555555544322 34455555555556666666555444433
Q ss_pred HhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 539 KDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 539 ~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.+ ++.+...|..-|.+..+.++-.++.+.+++ ++-|..+.-++...|....+++.|..-++...+.+|+.
T Consensus 781 Qe--cp~sg~LWaEaI~le~~~~rkTks~DALkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 781 QE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred Hh--CCccchhHHHHHHhccCcccchHHHHHHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 32 222222333333332222222222222222 22344444444455555555555655555555555555
No 68
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=0.013 Score=65.44 Aligned_cols=317 Identities=12% Similarity=0.082 Sum_probs=211.7
Q ss_pred cCCcccccCCCCCcccchhhccCCchhhhcccCCCCccHHHHHHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004114 286 QDTGQHQQALSGHYSGNFGIHQNSPSFYQQDQNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDD 365 (773)
Q Consensus 286 ~~~~~~~q~~~~~y~~~i~~~~qsp~~~~q~~~~~~~~w~~a~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~ 365 (773)
+.++.||.+-.-.|...|+...-...+- ..--+|......++++..+++..+... .-+..+|-.-+++=.|+..
T Consensus 49 ~EL~eYq~RkRkefEd~irrnR~~~~~W-----ikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~ 122 (677)
T KOG1915|consen 49 EELSEYQLRKRKEFEDQIRRNRLNMQVW-----IKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQ 122 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhh
Confidence 4456666666666766665433221111 233467888888888888888776555 5567788888899999999
Q ss_pred hhHHHHhhhhccHH---------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004114 366 FAEASRSSQNNGTL---------EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHV 436 (773)
Q Consensus 366 ~~~A~~v~~~~~~~---------~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m 436 (773)
+..|+.|++..... .-+.+=-..|++..|.++|++-.. ..||.-.|.+.|+-=.+-..++.|+.+++..
T Consensus 123 vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 123 VNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERF 200 (677)
T ss_pred HhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999974321111 123344456899999999988765 4899999999999888888899999999887
Q ss_pred HHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC------------------------------------------
Q 004114 437 ERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER------------------------------------------ 474 (773)
Q Consensus 437 ~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~------------------------------------------ 474 (773)
+-. .|++.+|--...-=-++|.+..|..+|+...+.
T Consensus 201 V~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r 278 (677)
T KOG1915|consen 201 VLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGR 278 (677)
T ss_pred hee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 653 467766666666666666666666665543210
Q ss_pred ------------------------------------------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-
Q 004114 475 ------------------------------------------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD- 511 (773)
Q Consensus 475 ------------------------------------------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~- 511 (773)
|-.+|--.+..-...|+.+...++|++.... +.|-.
T Consensus 279 aeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~e 357 (677)
T KOG1915|consen 279 AEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASE 357 (677)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhH
Confidence 1123334444444456666666666665542 44421
Q ss_pred ------HHHHHHHHHH---HcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHH----hCCCHHHHHHHHHhC-CCCC
Q 004114 512 ------QIFIGVFSAC---SALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG----STGYLDEALEFIEKM-PMEP 577 (773)
Q Consensus 512 ------~Ty~~LL~a~---~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~----r~G~l~eA~~lf~~M-~~~P 577 (773)
..|.-+=-|| ....+++.+.++|....+- |+-...||.-+=-+|+ ++-++..|.+++... |..|
T Consensus 358 kr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP 435 (677)
T KOG1915|consen 358 KRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP 435 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC
Confidence 1232222222 2345666667777666442 3334566665555554 678899999998765 8889
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 578 DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 578 d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
-..++...|..=.+.++++....+++.+.+..|.+-.+
T Consensus 436 K~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 436 KDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 99999999999999999999999999999999998533
No 69
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.90 E-value=0.00046 Score=79.41 Aligned_cols=109 Identities=13% Similarity=0.252 Sum_probs=82.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
.|.+-..+..|.+|+.+++.+..... -...|..+..-|+..|+++.|.++|.+. + .++-.|+||.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhcccc
Confidence 46666778888888888888776532 2345778888899999999999998643 2 35667899999999
Q ss_pred hHHHHHHHHHhhcC--CHhHHHHHHHHHHHcCChHHHHHHHH
Q 004114 461 MDDAFSVFSNMTER--DLTSWDTMITGFAKNGLGEDAVDIFS 500 (773)
Q Consensus 461 l~eA~~lf~~M~~~--d~~tyn~LI~ay~~~G~~deAl~Lf~ 500 (773)
+++|.++-++...| .++.|-+-..-+-++|++.+|..||-
T Consensus 807 w~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 807 WEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 99999998887765 45566666666777777777776663
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.90 E-value=0.0078 Score=66.15 Aligned_cols=222 Identities=10% Similarity=-0.043 Sum_probs=134.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHh
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACG----DAKALEEAKAVHEHVERLLSPLR-VSTYNGILKMYSE 457 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~----~~g~le~A~~l~~~m~k~G~~pd-~~tynaLI~ay~k 457 (773)
..+...|++++|.+++++..+.. +-|...+.. ..++. ..+..+.+.+++.. .....|+ ......+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 34567899999999999988762 223334432 11222 23445555555544 1122333 3444556678889
Q ss_pred CCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHcCCChHHHH
Q 004114 458 CDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPDD--QIFIGVFSACSALGDVVEGM 531 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd~--~Ty~~LL~a~~~~G~~deA~ 531 (773)
.|++++|+..+++..+ | +...+..+...|...|++++|+.++++.....- .|+. ..|..+...+...|+.++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999998874 2 566788888899999999999999998876432 2333 24556777888999999999
Q ss_pred HHHHHHHHhcCCCCCcchh-h--hHHHHHHhCCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 004114 532 LHFESMSKDYGIVPSMKHY-V--SIVDMLGSTGYLDEALEF---IEK---M-PMEPDVDVWEKLMNLCRMHGNLELGDRC 601 (773)
Q Consensus 532 ~if~~M~~~~Gi~Pd~~ty-n--~LI~~y~r~G~l~eA~~l---f~~---M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~ 601 (773)
.++++........+..... + .++..+...|....+.+. ... . +.............++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999874321111111111 1 233333344432222222 111 1 1111122223566677888888888888
Q ss_pred HHHHHHc
Q 004114 602 AEIVEQL 608 (773)
Q Consensus 602 ~e~m~el 608 (773)
++.+...
T Consensus 287 L~~l~~~ 293 (355)
T cd05804 287 LAALKGR 293 (355)
T ss_pred HHHHHHH
Confidence 8777643
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.88 E-value=0.0023 Score=65.68 Aligned_cols=192 Identities=10% Similarity=0.019 Sum_probs=157.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004114 377 GTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYS 456 (773)
Q Consensus 377 ~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~ 456 (773)
....|--+|.+.|+...|..-+++.++.. +-+..++..+...|-+.|..+.|.+-|+..++... -+..+.|..---+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 34568889999999999999999999873 22556889999999999999999999999998643 25667888888999
Q ss_pred hCCChHHHHHHHHHhh-cC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 004114 457 ECDSMDDAFSVFSNMT-ER----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM 531 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~-~~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~ 531 (773)
..|++++|...|++.. .| -..||..+.-+..+.|+.+.|.+.|++-++..-. ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 9999999999999766 45 3468999999999999999999999998875322 2346777888888999999999
Q ss_pred HHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 532 LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 532 ~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
.+++..... ..++....-..|..-.+.|+-+.|.+.=..+
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999988765 3378888777888888889888877654444
No 72
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.88 E-value=0.0018 Score=67.18 Aligned_cols=176 Identities=17% Similarity=0.093 Sum_probs=107.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CCH-HHHHHH
Q 004114 378 TLEQLDGLVKEGKVKEAIEVLGLLEKQCISVD-L---PTFSQLMQACGDAKALEEAKAVHEHVERLLSP-LRV-STYNGI 451 (773)
Q Consensus 378 ~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd-~---~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~-pd~-~tynaL 451 (773)
...+...+.+.|++++|+..|+++... .|+ . .++..+..++...|++++|...++.+++.... +.. .++..+
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 345778888999999999999998775 333 2 35667777888999999999999999886322 111 234444
Q ss_pred HHHHHhC--------CChHHHHHHHHHhhc--CC-HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 452 LKMYSEC--------DSMDDAFSVFSNMTE--RD-LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSA 520 (773)
Q Consensus 452 I~ay~k~--------G~l~eA~~lf~~M~~--~d-~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a 520 (773)
-.++.+. |+.++|.+.|+.+.+ |+ ...+.++..... .... +. .....+...
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~------~~--------~~~~~~a~~ 175 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR------LA--------GKELYVARF 175 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH------HH--------HHHHHHHHH
Confidence 4455543 678888888888764 32 222222211100 0000 00 001133445
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+.+.|+.++|...+....+.+.-.| ....+..+..++.+.|+.++|.++++.+
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6677777777777777665533222 2456667777777777777777777665
No 73
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.85 E-value=0.0013 Score=80.92 Aligned_cols=197 Identities=11% Similarity=0.154 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHhhcC--CHhHHHHH
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERL-LSPL---RVSTYNGILKMYSECDSMDDAFSVFSNMTER--DLTSWDTM 482 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-G~~p---d~~tynaLI~ay~k~G~l~eA~~lf~~M~~~--d~~tyn~L 482 (773)
....|-.-|.-....+++++|+++.++.++. ++.- -.-+|.+++++-..-|.-+...++|++..+- -...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3457777788888999999999999998876 2211 1347888888888888889999999988753 35679999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC---cchhhhHHHHHHh
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS---MKHYVSIVDMLGS 559 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd---~~tyn~LI~~y~r 559 (773)
...|.+.+..++|.++|+.|.+. +.-....|...+..+.+...-+.|..++.+..+. .|. +....-.+.+-.+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhh
Confidence 99999999999999999999875 3345568899999999998888999988876553 343 4445556677789
Q ss_pred CCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 560 TGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 560 ~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
.|+.+.+..+|+.. ....-...|+.+|+.=.++|+.+.++.+++++..+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 99999999999987 222356799999999999999999999999988764
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.83 E-value=0.0033 Score=73.12 Aligned_cols=225 Identities=16% Similarity=0.160 Sum_probs=138.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC--
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLP-TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC-- 458 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~-ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~-- 458 (773)
+..+...|++++|++.+.+-... .+|.. .+......+.+.|+.++|..++..+++.+. .+..-|..|..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcc
Confidence 45567788888888888664333 44544 445566667788888888888888888763 2444555555555222
Q ss_pred ---CChHHHHHHHHHhhcC--CHhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 004114 459 ---DSMDDAFSVFSNMTER--DLTSWDTMITGFAKNGLG-EDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 459 ---G~l~eA~~lf~~M~~~--d~~tyn~LI~ay~~~G~~-deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
...+...++++++.+. -..+.-.+.-.+.....+ ..+...+..+...|+.+ +|+.|-.-|......+-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 2567777788877642 212222222222221222 23455556667777643 56666555655555554555
Q ss_pred HHHHHHHhc-------------CCCCCc--chhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCh
Q 004114 533 HFESMSKDY-------------GIVPSM--KHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNL 595 (773)
Q Consensus 533 if~~M~~~~-------------Gi~Pd~--~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~ 595 (773)
++..+.... .-.|+. .++.-|...|-+.|++++|++++++. ...|+ +..|..-...+.+.|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 555543321 113444 34455667777888888888888855 55666 56677777788888888
Q ss_pred hHHHHHHHHHHHcCCCC
Q 004114 596 ELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 596 e~A~~~~e~m~el~p~~ 612 (773)
+.|.++++...++++.+
T Consensus 245 ~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 245 KEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHHhCChhh
Confidence 88888888888888776
No 75
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.82 E-value=2.5e-05 Score=55.59 Aligned_cols=34 Identities=26% Similarity=0.650 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004114 476 LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP 509 (773)
Q Consensus 476 ~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P 509 (773)
+.+|+++|.+|++.|+++.|+.+|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888887
No 76
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.81 E-value=0.0033 Score=77.54 Aligned_cols=218 Identities=14% Similarity=0.144 Sum_probs=164.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD-----LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMY 455 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd-----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay 455 (773)
-|.-..+.++.++|.+++++.+.. +.+. .-.|.++++.-...|.-+...++|+++.+.. --..+|..|...|
T Consensus 1464 YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy 1540 (1710)
T KOG1070|consen 1464 YMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIY 1540 (1710)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHH
Confidence 466667888899999999888754 3221 2357777777777788899999999998863 2245799999999
Q ss_pred HhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHH-HHHHHHHHcCCChHH
Q 004114 456 SECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD--DQIF-IGVFSACSALGDVVE 529 (773)
Q Consensus 456 ~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd--~~Ty-~~LL~a~~~~G~~de 529 (773)
.+....++|-++|+.|.++ ....|...+..+.+..+.++|..++.+.++. -|- .+-+ .-.+..-.+.|+.+.
T Consensus 1541 ~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred HHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchh
Confidence 9999999999999999975 6789999999999999999999999988774 344 2222 222333357899999
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 530 GMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM---PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 530 A~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M---~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
|+.+|+..... .+--...|+..|++=.+.|+.+.++.+|++. .+.|- -..|..-|..=..+|+-+.++.+-.+
T Consensus 1619 GRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1619 GRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred hHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 99999998776 3345778999999999999999999999987 33332 34555556555666765555544433
Q ss_pred H
Q 004114 605 V 605 (773)
Q Consensus 605 m 605 (773)
+
T Consensus 1697 A 1697 (1710)
T KOG1070|consen 1697 A 1697 (1710)
T ss_pred H
Confidence 3
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.79 E-value=0.0016 Score=67.45 Aligned_cols=181 Identities=11% Similarity=0.094 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-C-CHHHHHHHHHHHHhCCChHHHHHHHHHhhc--CC-Hh---HHH
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSP-L-RVSTYNGILKMYSECDSMDDAFSVFSNMTE--RD-LT---SWD 480 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~-p-d~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~d-~~---tyn 480 (773)
....+-.+..++...|+++.|...++.+++.... | ...++..+..+|.+.|++++|+..|+++.+ |+ .. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556677777778888888888888888775321 1 123566677888888888888888888764 21 11 344
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhh
Q 004114 481 TMITGFAKN--------GLGEDAVDIFSQFKQAGLKPDDQ-IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYV 551 (773)
Q Consensus 481 ~LI~ay~~~--------G~~deAl~Lf~eM~~~Gv~Pd~~-Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn 551 (773)
.+-.++... |+.++|++.|+++... .|+.. ....+... .. ... .+ .. ...
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~-~~--------~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RL-AG--------KEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HH-HH--------HHH
Confidence 444444443 6677888888887764 34432 12111111 00 000 00 00 112
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM----PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDP 610 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M----~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p 610 (773)
.+...|.+.|++++|...+++. +-.| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4667789999999999999887 2223 357888999999999999999998888876554
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.78 E-value=0.00064 Score=73.57 Aligned_cols=210 Identities=12% Similarity=0.043 Sum_probs=132.3
Q ss_pred HHHHHHHHhcCChhHHHHhhhh-----ccHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 004114 354 SQVLNNCKHEDDFAEASRSSQN-----NGTLEQLDGLVKE-GKVKEAIEVLGLLEKQCISV-DLPTFSQLMQACGDAKAL 426 (773)
Q Consensus 354 n~LI~~y~k~g~~~~A~~v~~~-----~~~~~LI~a~~~~-G~~~eAl~lf~~M~~~Gv~P-d~~ty~~LL~a~~~~g~l 426 (773)
--+..+|--.|+.+.+..-+.. .....++..|... .+-+.++.-+.+.......+ +..........+...|++
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY 118 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH
Confidence 3455666667777665542211 1111245555555 33444554444443333232 333333333445677999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC--CHhH---HHHHHHHHHHcCChHHHHHHHHH
Q 004114 427 EEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER--DLTS---WDTMITGFAKNGLGEDAVDIFSQ 501 (773)
Q Consensus 427 e~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~--d~~t---yn~LI~ay~~~G~~deAl~Lf~e 501 (773)
++|++++... .+.......|.+|.+.++++.|.+.|+.|.+- |.+. ..+.|..+.-...+.+|..+|++
T Consensus 119 ~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~E 192 (290)
T PF04733_consen 119 EEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEE 192 (290)
T ss_dssp HHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 9999887542 35667778899999999999999999999853 4332 23333333334579999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCH-HHHHHHHHhC
Q 004114 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYL-DEALEFIEKM 573 (773)
Q Consensus 502 M~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l-~eA~~lf~~M 573 (773)
|.+. ..++..+.+.+..++...|++++|..++.+... ..| +..+...+|.+....|+. +.+.+++..+
T Consensus 193 l~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~---~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 193 LSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE---KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 8654 678888999999999999999999998877533 233 456666777777788887 7788888888
No 79
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.77 E-value=0.01 Score=71.34 Aligned_cols=272 Identities=18% Similarity=0.167 Sum_probs=167.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHhh----hhc--------cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--H
Q 004114 348 QNGMMASQVLNNCKHEDDFAEASRSS----QNN--------GTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPT--F 413 (773)
Q Consensus 348 pd~~~~n~LI~~y~k~g~~~~A~~v~----~~~--------~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~t--y 413 (773)
-++.+.+.|.+.|--.|+...++.+. ... ...-+-.+|-..|++++|...|.+-... .+|-++ +
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 45666777888888888888877752 111 0111667788888888888887665543 455433 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC----ChHHHHHHHHHhhcC---CHhHHHHHHHHH
Q 004114 414 SQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD----SMDDAFSVFSNMTER---DLTSWDTMITGF 486 (773)
Q Consensus 414 ~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G----~l~eA~~lf~~M~~~---d~~tyn~LI~ay 486 (773)
--|-..+...|+++.+...|+.+.+.. +-+..+.-.|-..|+..+ ..+.|..++.+..++ |+..|-.+-..|
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 446667778888888888888887752 223445555555555543 456777777766654 455555444444
Q ss_pred HHcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcC--CCCCcc------hhhhHH
Q 004114 487 AKNGLGEDAVDIFSQF----KQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYG--IVPSMK------HYVSIV 554 (773)
Q Consensus 487 ~~~G~~deAl~Lf~eM----~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~G--i~Pd~~------tyn~LI 554 (773)
- .++...++.+|... ...+-.+-....+.+-......|++++|...|.+...... ..+|.. +--.|.
T Consensus 425 e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 E-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred H-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 4 34444446666543 3444456667788888888888888888888877654311 122221 122234
Q ss_pred HHHHhCCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcCCch
Q 004114 555 DMLGSTGYLDEALEFIEKM-PMEPDV-DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVP 623 (773)
Q Consensus 555 ~~y~r~G~l~eA~~lf~~M-~~~Pd~-~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG~~~ 623 (773)
..+-..++.+.|.+.+..+ ...|.- ..|--|.......+...+|...+..+...+.+++++.+..|.|.
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 4445566778888888777 334543 33333332223346677787778888888888887777777654
No 80
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.77 E-value=0.019 Score=68.64 Aligned_cols=264 Identities=15% Similarity=0.139 Sum_probs=143.5
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHhh---------hhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004114 340 YQSYSGN-IQNGMMASQVLNNCKHEDDFAEASRSS---------QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVD 409 (773)
Q Consensus 340 ~m~~~gl-~pd~~~~n~LI~~y~k~g~~~~A~~v~---------~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd 409 (773)
+++..-+ +.|...|..+-+.....|.++.|+-.+ .|.-..+=+..|-+.|+..+|++-|.+|...--..|
T Consensus 196 ~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d 275 (895)
T KOG2076|consen 196 WLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD 275 (895)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh
Confidence 3343334 446678888888888899998888642 122223356778888999999999999887633223
Q ss_pred HHHHHH----HHHHHHhcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc----CC-----
Q 004114 410 LPTFSQ----LMQACGDAKALEEAKAVHEHVERL-LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE----RD----- 475 (773)
Q Consensus 410 ~~ty~~----LL~a~~~~g~le~A~~l~~~m~k~-G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~----~d----- 475 (773)
..-+.. ++..+...++-+.|.+.+....+. +-..+...++.++.+|.+....+.|......+.. +|
T Consensus 276 ~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 276 IERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhh
Confidence 333333 344455566667888877766663 2234555778888888888888888777665543 11
Q ss_pred -----------------HhHHH----HHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCChHHHHH
Q 004114 476 -----------------LTSWD----TMITGFAKNGLGEDAVDIFSQFKQAGLKP--DDQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 476 -----------------~~tyn----~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P--d~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
..+|. -++-++......+.+..+..-..+..+.| +...|.-+..++...|++.+|+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~ 435 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALR 435 (895)
T ss_pred hhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 11111 11222333333333333333333333222 23345555555555555555555
Q ss_pred HHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 533 HFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 533 if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
+|..+... ...-+...|--+..+|...|..++|.+.++.. ...|+ ...--+|-..+.+.|+.|+|.++++.
T Consensus 436 ~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 436 LLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 55555433 11122445555555555555555555555544 22332 22223344444555555555444444
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.76 E-value=0.015 Score=63.97 Aligned_cols=246 Identities=13% Similarity=0.088 Sum_probs=148.2
Q ss_pred HHHHhcCChhHHHHhhhh----ccH-HHHHH---HHHH----cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 004114 358 NNCKHEDDFAEASRSSQN----NGT-LEQLD---GLVK----EGKVKEAIEVLGLLEKQCISVDL-PTFSQLMQACGDAK 424 (773)
Q Consensus 358 ~~y~k~g~~~~A~~v~~~----~~~-~~LI~---a~~~----~G~~~eAl~lf~~M~~~Gv~Pd~-~ty~~LL~a~~~~g 424 (773)
..+...|++++|..++.. ... ...+. .+.. .+....+.+++.. .....|+. .....+...+...|
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 345667889988885311 100 01111 2333 3444555555443 22233443 34445566778899
Q ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-----CCH--hHHHHHHHHHHHcCChHHHHH
Q 004114 425 ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE-----RDL--TSWDTMITGFAKNGLGEDAVD 497 (773)
Q Consensus 425 ~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~-----~d~--~tyn~LI~ay~~~G~~deAl~ 497 (773)
++++|...++..++.. +.+...+..+...|...|++++|+.++++..+ ++. ..|-.+...+...|+.++|+.
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999975 33566788889999999999999999998764 222 346678889999999999999
Q ss_pred HHHHHHHCCC-CCCHHHH---HHHHHHHHcCCChHHHHHH--HHHHHHhcCCCCCcchh--hhHHHHHHhCCCHHHHHHH
Q 004114 498 IFSQFKQAGL-KPDDQIF---IGVFSACSALGDVVEGMLH--FESMSKDYGIVPSMKHY--VSIVDMLGSTGYLDEALEF 569 (773)
Q Consensus 498 Lf~eM~~~Gv-~Pd~~Ty---~~LL~a~~~~G~~deA~~i--f~~M~~~~Gi~Pd~~ty--n~LI~~y~r~G~l~eA~~l 569 (773)
+|++...... .+..... ..++.-+...|..+.+.++ ....... ........+ ...+.++...|+.++|..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999864332 1222222 1334444455554444443 2111111 111111122 2566777889999999999
Q ss_pred HHhCC--CCC---C----HHHHHHHHH--HHHHcCChhHHHHHHHHHHH
Q 004114 570 IEKMP--MEP---D----VDVWEKLMN--LCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 570 f~~M~--~~P---d----~~ty~~LI~--a~~~~G~~e~A~~~~e~m~e 607 (773)
++.+. .+. . ..+-..++. ++...|+.+.|.+.+.....
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 98871 111 1 112222333 34578888888777766554
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.002 Score=73.45 Aligned_cols=239 Identities=13% Similarity=0.169 Sum_probs=171.9
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHH
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAV 496 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl 496 (773)
+.+.|++.+|.-+|+..++.. +-+...|--|-..-+..++-..|+..+.+..+- +....-+|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 357788999999998888875 336778888888888888888999999888753 6777888888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHH
Q 004114 497 DIFSQFKQAGLKPDDQIFIGVF-----------SACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDE 565 (773)
Q Consensus 497 ~Lf~eM~~~Gv~Pd~~Ty~~LL-----------~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~e 565 (773)
..++.-+....+ |..+. +.......+.+..++|-.+....+.++|..++.+|--.|--.|.+++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999888664311 11111 11122233455567777777766767888899999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-------HHHHcCCchhhhhHHHHHhccc
Q 004114 566 ALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN-------EKSKAGLVPVNASELAKEKENK 636 (773)
Q Consensus 566 A~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~-------~y~~aG~~~~~v~~lmk~~~l~ 636 (773)
|.+.|+.. .++| |..+|+.|-..++...+.++|..++.+..++.|..+. .|...|...+++..++....+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999977 6677 5789999999999999999999999999999998763 3445555555555444333222
Q ss_pred ccccccEEEEcCEEEEEEeCCCCCccHHHHHHHHHHHHHHHH
Q 004114 637 KLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMK 678 (773)
Q Consensus 637 k~~~~s~ie~~~~v~~f~~g~~~hp~~~ei~~~l~~L~~~Mk 678 (773)
+.... .....++ .++|+..|+..+..|.
T Consensus 529 ~ks~~-------------~~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 529 RKSRN-------------HNKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred hcccc-------------cccCCcc-hHHHHHHHHHHHHHcC
Confidence 21000 0111222 5788888876555554
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00042 Score=73.83 Aligned_cols=202 Identities=14% Similarity=0.098 Sum_probs=162.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcC
Q 004114 414 SQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNG 490 (773)
Q Consensus 414 ~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G 490 (773)
..+-++|.+.|.+.+|...++..++. .|-+.||-.|-++|.+..+.+.|+.+|.+-.+ | |+.-..-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 56778889999999999999988775 45666788899999999999999999998875 4 4444455777888899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHH
Q 004114 491 LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFI 570 (773)
Q Consensus 491 ~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf 570 (773)
..++|+++|++..+.. ..++....++...|.-.++.+-|+++|.++..- |+. +.+.|+.+--+|.-.+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999988742 234556777788888999999999999998765 754 5678888888888899999999888
Q ss_pred HhC---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcC
Q 004114 571 EKM---PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAG 620 (773)
Q Consensus 571 ~~M---~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG 620 (773)
.+. --.|+ ..+|-.|-......|++..|.+.+++...-++++..++...+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLa 436 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLA 436 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHH
Confidence 765 11244 567888887788899999999999999988888765444333
No 84
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0038 Score=71.06 Aligned_cols=233 Identities=15% Similarity=0.129 Sum_probs=173.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
...-+...+++.+.+++++...+.. ++....+..=|.++...|+-.+-..+=..|++. .+-...+|-++---|.-.|+
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcC
Confidence 3455667899999999999988752 344445555566777888877766666667765 34456789888888888899
Q ss_pred hHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHcCCChHHHHHHH
Q 004114 461 MDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA--GL-KPDDQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 461 l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~--Gv-~Pd~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
.++|++.|.+...- =...|-.+-..|+-.|..|.|+..|...-+. |+ .| ..|. ---|...+.++.|.++|
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP--~LYl--gmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP--SLYL--GMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch--HHHH--HHHHHHhccHHHHHHHH
Confidence 99999999876643 3468999999999999999999998776552 32 23 2233 33567788999999988
Q ss_pred HHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 535 ESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM--------PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 535 ~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M--------~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
.... ++.| |+.+.+-+--+.-..+.+.+|..+|... +-++ ...+++.|-.+|++.+..++|...++.
T Consensus 404 ~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 404 KQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 7653 5555 5566666665666678888888888765 1122 456788888899999999999999999
Q ss_pred HHHcCCCCchHHHHcCCc
Q 004114 605 VEQLDPSRLNEKSKAGLV 622 (773)
Q Consensus 605 m~el~p~~~~~y~~aG~~ 622 (773)
...+.|.+++.++..|.+
T Consensus 481 aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYI 498 (611)
T ss_pred HHHcCCCchhHHHHHHHH
Confidence 999999998776666654
No 85
>PLN02789 farnesyltranstransferase
Probab=97.65 E-value=0.028 Score=61.79 Aligned_cols=222 Identities=9% Similarity=0.047 Sum_probs=149.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC-
Q 004114 384 GLVKEGKVKEAIEVLGLLEKQCISVDLP-TFSQLMQACGDAK-ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS- 460 (773)
Q Consensus 384 a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~-ty~~LL~a~~~~g-~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~- 460 (773)
.+...++.++|+.++.++++. .|+-. +|...-.++...+ .+++++..++.+++...+ +..+|+-.--++.+.|+
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCch
Confidence 345567889999999998875 45433 4554444555666 689999999999987543 55567765555556665
Q ss_pred -hHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC---CCh----HH
Q 004114 461 -MDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL---GDV----VE 529 (773)
Q Consensus 461 -l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~---G~~----de 529 (773)
.++++.++++|.+ ++..+|+-..-.+...|++++|++.+++|++.... +...|+.....+.+. |.. ++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 3677888888774 47889999999999999999999999999997655 344555544444443 222 45
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhHHHHHHhC----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC----------
Q 004114 530 GMLHFESMSKDYGIVPSMKHYVSIVDMLGST----GYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHG---------- 593 (773)
Q Consensus 530 A~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~----G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G---------- 593 (773)
+..+...++.. .+-+...|+-+-.+|... +...+|.+++.+. ...| +......|++.|+...
T Consensus 202 el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 202 ELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 56666555443 233567788777777763 3446688887775 3334 5677888888887632
Q ss_pred --------ChhHHHHHHHHHHHcCCC
Q 004114 594 --------NLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 594 --------~~e~A~~~~e~m~el~p~ 611 (773)
..++|.++++.+.+.+|-
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hccccccccHHHHHHHHHHHHhhCcH
Confidence 224566666666555553
No 86
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.64 E-value=0.013 Score=70.60 Aligned_cols=213 Identities=11% Similarity=0.056 Sum_probs=152.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKAL 426 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~l 426 (773)
..++.+...+=.+.+.-|..++|-+-+. .....++.+..+.....+++.-+....+. ...+...+-.|..+....|.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~i~~~~g~~ 102 (694)
T PRK15179 25 ASGPTILDLLEAALAEPGESEEAGRELL-QQARQVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVARALEAAHRS 102 (694)
T ss_pred CCCcHHHhHHHHHhcCcccchhHHHHHH-HHHHHHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHHHHHHcCCc
Confidence 4455566666677778888888765211 11123555554444444444333333333 455688888999999999999
Q ss_pred HHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004114 427 EEAKAVHEHVERLLSPLR-VSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQF 502 (773)
Q Consensus 427 e~A~~l~~~m~k~G~~pd-~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM 502 (773)
++|..+++..... .|| ......+...+.+.+++++|+..+++... | +......+-.++.+.|++++|+++|++.
T Consensus 103 ~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 103 DEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred HHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 9999999999885 455 55677788999999999999999999885 3 5566777888999999999999999999
Q ss_pred HHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 503 KQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 503 ~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
... .|+ ..++..+-.++-..|+.++|...|+...+. ..+...-|+-++ +++..-..+++.+
T Consensus 181 ~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~ 242 (694)
T PRK15179 181 SRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRRL------VDLNADLAALRRL 242 (694)
T ss_pred Hhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHHH------HHHHHHHHHHHHc
Confidence 983 344 678889999999999999999999988765 335455555443 2333444555555
No 87
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=6.3e-05 Score=52.20 Aligned_cols=31 Identities=26% Similarity=0.762 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGL 507 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv 507 (773)
+|||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 88
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.56 E-value=0.0034 Score=73.27 Aligned_cols=216 Identities=11% Similarity=0.030 Sum_probs=144.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004114 345 GNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGT-LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDA 423 (773)
Q Consensus 345 gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~-~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~ 423 (773)
.+.|--..--.+...+.++|-+.+|..++..-.+ ..+|.+|+..|+-.+|..+..+..+. +||..-|..+.+.....
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 3344444555677778888888888876543332 24788888888888888887777663 67888888888777777
Q ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHH
Q 004114 424 KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFS 500 (773)
Q Consensus 424 g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~ 500 (773)
.-++.|.++.+..-.+ .--.+-......+++++|.+.|+.-.+ | -..+|-.+-.+..+.+++..|.+.|.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 7778888877654332 111111111225777777777775432 2 45677777777777888888888887
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 501 QFKQAGLKPDDQ-IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 501 eM~~~Gv~Pd~~-Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
.-.. +.||.. .|+.|-.+|.+.++-.+|...+.+..+- . .-...+|...+-...+.|.+++|.+.+..|
T Consensus 544 rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 544 RCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 7665 456643 6788888888888888888777776553 3 334455666666677788888888777766
No 89
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.54 E-value=0.0028 Score=71.17 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
...+|+..+...++++.|+.+|+++.+.+...+-.|+..+...++-.+|++++++..+.. +-|...+..-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344556666677889999999999987766667778888888888889999998888642 2245556666667888999
Q ss_pred hHHHHHHHHHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhCCCCCC
Q 004114 527 VVEGMLHFESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKMPMEPD 578 (773)
Q Consensus 527 ~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd 578 (773)
.+.|..+.+++.+ +.|+ ..+|..|..+|.+.|++++|+..++.||+-|.
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 9999999988865 4554 56899999999999999999999999976543
No 90
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.069 Score=59.09 Aligned_cols=222 Identities=14% Similarity=0.084 Sum_probs=114.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLP----TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYS 456 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~----ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~ 456 (773)
+.+.+...|+.++|+..|++.+.. .|+.. .|..| ++..|+++....+...+.... +-+...|-.-.....
T Consensus 238 lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 238 LGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLY 311 (564)
T ss_pred HhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhh
Confidence 455566666666666666665443 22221 12222 234455555555554444321 111122222222223
Q ss_pred hCCChHHHHHHHHHhhcCCH---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTERDL---TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~~d~---~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
...+.+.|+.+-++..+-+. ..|-.--..+...|++++|.-.|++... +.| +...|-.|+.+|...|.+.+|..
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 34455666666555543322 2222222455666777777777766654 333 34567777777777777777765
Q ss_pred HHHHHHHhcCCCCCcchhhhH-HHHHHh-CCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 533 HFESMSKDYGIVPSMKHYVSI-VDMLGS-TGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 533 if~~M~~~~Gi~Pd~~tyn~L-I~~y~r-~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
+-....+. +.-+..+.+.+ ...+.- ..--++|..++++- .++|+ ......+...|...|..+.+..+++.....
T Consensus 390 ~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 390 LANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 55544333 22223332222 111211 11235677777654 55666 345556666777777777777777777766
Q ss_pred CCCC
Q 004114 609 DPSR 612 (773)
Q Consensus 609 ~p~~ 612 (773)
.|+.
T Consensus 468 ~~D~ 471 (564)
T KOG1174|consen 468 FPDV 471 (564)
T ss_pred cccc
Confidence 6655
No 91
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.48 E-value=0.0027 Score=73.34 Aligned_cols=130 Identities=18% Similarity=0.267 Sum_probs=82.5
Q ss_pred HHHHhCCChHHHHHHHHHhhcCCHhH--HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHH
Q 004114 453 KMYSECDSMDDAFSVFSNMTERDLTS--WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG 530 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~~~d~~t--yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA 530 (773)
.+-.....+.+|+.+++.+....+.+ |-.+..-|+..|+++.|.+||.+- ..|+-.|..|.+.|+|+.|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 33445667777888888777654433 666677888888888888888542 2355667778888888888
Q ss_pred HHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 004114 531 MLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDR 600 (773)
Q Consensus 531 ~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~ 600 (773)
.++-.+. .|-..+...|-+-..-+-+.|++.+|++++-.++ +|+.. |..|-++|..+...+
T Consensus 811 ~kla~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~a-----iqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 811 FKLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDKA-----IQMYDKHGLDDDMIR 871 (1636)
T ss_pred HHHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchHH-----HHHHHhhCcchHHHH
Confidence 7765543 2444455566666666667777777777766655 45432 344444444443333
No 92
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.48 E-value=0.0022 Score=74.80 Aligned_cols=212 Identities=12% Similarity=0.090 Sum_probs=169.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
.+...+...|-...|+.+|+++. .|.-+|..|+..|+..+|..+..+.++ -+||...|..|.+....-.
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 47888999999999999998874 466778889999999999999888777 4789999999999988888
Q ss_pred ChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 460 SMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 460 ~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
-++.|.++++....+--..|+-++ .+.+++++|.+.|+.-.+... --..||-.+-.+..+.+++..|.+.|.....
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~---~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLI---LSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhcccc---ccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 899999999877655333333332 237899999999987655321 1235777777778889999999999987643
Q ss_pred hcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 540 DYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKM-PM-EPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 540 ~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~-~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+.|| ...||.|-.+|.+.++-.+|...+.+. .+ .-+..+|...+....+-|.++.|.+++..+..+.
T Consensus 548 ---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 548 ---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred ---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 5665 689999999999999999999999887 22 2345678788888899999999999999988763
No 93
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.012 Score=61.66 Aligned_cols=176 Identities=15% Similarity=0.096 Sum_probs=120.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004114 431 AVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD 510 (773)
Q Consensus 431 ~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd 510 (773)
++.+.+.......+......-...|++.|+.++|++...... +....-.=+..+.+..+.+-|...+++|.+- -+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 344555554444444444444556888899999999888743 3333333344566777889999999999874 25
Q ss_pred HHHHHHHHHHHHc----CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC--CCCCCHHHHHH
Q 004114 511 DQIFIGVFSACSA----LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM--PMEPDVDVWEK 584 (773)
Q Consensus 511 ~~Ty~~LL~a~~~----~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M--~~~Pd~~ty~~ 584 (773)
..|.+-|..++.+ .+.+.+|.-+|++|..+ ..|+..+-+.+..++...|++++|..++++. .-..+..+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 5677766666654 45688899999999664 6788888889999999999999999999887 22335566666
Q ss_pred HHHHHHHcCCh-hHHHHHHHHHHHcCCCCc
Q 004114 585 LMNLCRMHGNL-ELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 585 LI~a~~~~G~~-e~A~~~~e~m~el~p~~~ 613 (773)
+|-.-...|.- +...+.+..+....|..+
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66555555543 444666777777777663
No 94
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.046 Score=62.55 Aligned_cols=261 Identities=10% Similarity=0.041 Sum_probs=181.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHhh---------hhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004114 348 QNGMMASQVLNNCKHEDDFAEASRSS---------QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQ 418 (773)
Q Consensus 348 pd~~~~n~LI~~y~k~g~~~~A~~v~---------~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~ 418 (773)
-++.+.....+-|-...++.+-.+++ ....+.-=|.++...|+..+-+.+=.+|.+. .+-.+.+|-++--
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 34444445555555666666666641 1112223577899999988888888888776 3345678888877
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHH
Q 004114 419 ACGDAKALEEAKAVHEHVERLLSPLR-VSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGED 494 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~G~~pd-~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~de 494 (773)
-|-..|..++|++.|...... .|. ...|-.+-..|+-.|.-|.|+..+....+- ...-+--+---|.+.+..+.
T Consensus 321 YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 777889999999999876553 332 457888888999999999988877654421 11112223445777888999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhc-CCCC----CcchhhhHHHHHHhCCCHHHHHH
Q 004114 495 AVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDY-GIVP----SMKHYVSIVDMLGSTGYLDEALE 568 (773)
Q Consensus 495 Al~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~-Gi~P----d~~tyn~LI~~y~r~G~l~eA~~ 568 (773)
|.++|.+... +-|+ ...++-+-...-..+.+.+|..+|......- .+.+ ...+++.|-.+|.+.++.++|..
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999977654 4554 4444544444446788899998888765210 0111 23456777788899999999999
Q ss_pred HHHhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 569 FIEKM-P-MEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 569 lf~~M-~-~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
.++.. . ...+..++.++--.+...|+++.|...+.+..-+.|++.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 99876 2 234788888888889999999999999999999999884
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.40 E-value=0.022 Score=68.71 Aligned_cols=142 Identities=11% Similarity=0.113 Sum_probs=94.5
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHH
Q 004114 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQI-FIG 516 (773)
Q Consensus 441 ~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~T-y~~ 516 (773)
...++..+-.|.+.....|..++|+.+++...+ | .+..+-.++..+.+.+++++|+..+++.... .|+..+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 344566677777777778888888888877763 4 4556777777788888888888888777763 455544 345
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 004114 517 VFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM--PMEPDVDVWEKLM 586 (773)
Q Consensus 517 LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI 586 (773)
+-.++.+.|+.++|..+|++.... .+-+..++..+-.++-+.|+.++|...|+.. ...|...-|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 555666778888888888777652 2223566777777777788888888777766 2223444444443
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.40 E-value=0.0098 Score=60.73 Aligned_cols=115 Identities=9% Similarity=0.097 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHH-HHcCC--hHHHH
Q 004114 423 AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGF-AKNGL--GEDAV 496 (773)
Q Consensus 423 ~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay-~~~G~--~deAl 496 (773)
..+.+++...++..++.. +.+...|..|...|...|+.++|...|++..+ | +...|..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 334444444444444432 23455555555555555555555555555442 2 444555554442 34444 35555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 497 DIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 497 ~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
+++++..+..-. +..++..+-.++...|++++|+..|+++.+
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555553211 233444455555555666666665555544
No 97
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.015 Score=65.30 Aligned_cols=196 Identities=16% Similarity=0.149 Sum_probs=137.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHH
Q 004114 422 DAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDI 498 (773)
Q Consensus 422 ~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~L 498 (773)
-.|+.-.|..-|+..++....+. ..|--+-.+|....+-++-...|.+..+ | +..+|-.=-..+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 45777788888888877643322 2366677788888888888888887763 2 445555555555566778888888
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCC
Q 004114 499 FSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PME 576 (773)
Q Consensus 499 f~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~ 576 (773)
|++-+. +.|. ...|.-+-.+.-+.+.+++++..|++.+++ ++-.+++|+.....+...+++++|.+.|+.. .++
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 888776 3443 456677777777888888889989888776 6666788888888888889999998888765 344
Q ss_pred CC---------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcCCch
Q 004114 577 PD---------VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVP 623 (773)
Q Consensus 577 Pd---------~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG~~~ 623 (773)
|+ ..+-.++|-.=.+ +++..|+.++....+++|....+|...|.+.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~ 547 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFE 547 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 43 2233333333233 7888888888888888888866666555543
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.01 Score=69.75 Aligned_cols=198 Identities=13% Similarity=0.121 Sum_probs=102.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHhhhhccH-----------------HH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004114 348 QNGMMASQVLNNCKHEDDFAEASRSSQNNGT-----------------LE-QLDGLVKEGKVKEAIEVLGLLEKQCISVD 409 (773)
Q Consensus 348 pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~-----------------~~-LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd 409 (773)
.+..+|..|..+|.+..++|.|.--+--+.- .+ +..--...|.+++|+.+|++-++.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 3455677777777777776666542100000 00 111123456666666666665542
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc----------------
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---------------- 473 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---------------- 473 (773)
..|=+.|-..|.+++|.++-+.--+..+. .||-....-+-..++++.|++.|++...
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 23333445556666666655432221222 2333333344445566666666654321
Q ss_pred -------CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC
Q 004114 474 -------RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS 546 (773)
Q Consensus 474 -------~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd 546 (773)
+|...|.=.-.-+-..|+.|.|+.+|...+ -|-++++..|-.|++++|.++-++- -|
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~es-------gd 966 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEES-------GD 966 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHhc-------cc
Confidence 122222222223334566666666665443 2555566666677777776655432 24
Q ss_pred cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 547 MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 547 ~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
...+-.|..+|-..|++.+|..+|.+.
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455666777777788888888877664
No 99
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.31 E-value=0.00031 Score=49.72 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLR 444 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd 444 (773)
+|+++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666554
No 100
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.28 E-value=0.11 Score=58.66 Aligned_cols=235 Identities=12% Similarity=0.084 Sum_probs=146.0
Q ss_pred HHHHHHcCC-HHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHH
Q 004114 382 LDGLVKEGK-VKEAIEVLGLLE---KQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL--LSPLRVSTYNGILKMY 455 (773)
Q Consensus 382 I~a~~~~G~-~~eAl~lf~~M~---~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~--G~~pd~~tynaLI~ay 455 (773)
|..+.+.|. .....++|+++. ..+-.|+..-.+-= .-..++..++..-+.|... .-.|+...+...+.+.
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THP----lp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHP----LPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCC----CchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 556666663 444556666666 33434443211100 0011334444444444332 1234555555555554
Q ss_pred HhCCChHHHHHHHHHhhc-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcCCChHHHHHH
Q 004114 456 SECDSMDDAFSVFSNMTE-RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF-IGVFSACSALGDVVEGMLH 533 (773)
Q Consensus 456 ~k~G~l~eA~~lf~~M~~-~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty-~~LL~a~~~~G~~deA~~i 533 (773)
.....-..+-.++.+-.+ .....+--..-.+...|..++|+.+++.+... .||-.-| ......+.+.++.++|.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~ 362 (484)
T COG4783 285 YEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIER 362 (484)
T ss_pred hccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 444333333333333333 23334444445566789999999999998774 5666655 4455677889999999999
Q ss_pred HHHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 004114 534 FESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDP 610 (773)
Q Consensus 534 f~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p 610 (773)
++.+.. ..|+ ....-.+-.+|.+.|+..+|..+++.. ...-|...|..|-.+|...|+..+|..+..+.
T Consensus 363 ~~kal~---l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~----- 434 (484)
T COG4783 363 LKKALA---LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG----- 434 (484)
T ss_pred HHHHHh---cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH-----
Confidence 998865 4565 455667788999999999999999887 33446889999999999999988777665543
Q ss_pred CCchHHHHcCCchhhhhHHHHHhcc
Q 004114 611 SRLNEKSKAGLVPVNASELAKEKEN 635 (773)
Q Consensus 611 ~~~~~y~~aG~~~~~v~~lmk~~~l 635 (773)
|...|.|...+..++..+..
T Consensus 435 -----~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 435 -----YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----HHhCCCHHHHHHHHHHHHHh
Confidence 45678887666666655444
No 101
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0079 Score=67.48 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=106.2
Q ss_pred HhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 004114 456 SECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 456 ~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
.-+|+.-+|..-|+...+ | +...|=-+-..|+...+.++.+..|.+.....-. +..+|-.--....-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 346888888888887764 2 2233666777888888888888888887765432 22334433344445577888888
Q ss_pred HHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 533 HFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 533 if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
-|++.+. +.| ++..|--+.-++-|.+++++++..|++. .+..-...|+.....+...++++.|.+-+++..+++
T Consensus 416 DF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 416 DFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 8876643 444 3455556666666888899999888877 332345677777888888888999999999888888
Q ss_pred CC
Q 004114 610 PS 611 (773)
Q Consensus 610 p~ 611 (773)
|.
T Consensus 493 ~~ 494 (606)
T KOG0547|consen 493 PR 494 (606)
T ss_pred cc
Confidence 88
No 102
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.27 E-value=0.00046 Score=48.93 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 004114 411 PTFSQLMQACGDAKALEEAKAVHEHVERLLSPL 443 (773)
Q Consensus 411 ~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~p 443 (773)
.||+++|.+|++.|+++.|.+++++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777765
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.26 E-value=0.027 Score=57.53 Aligned_cols=144 Identities=6% Similarity=0.054 Sum_probs=88.3
Q ss_pred HHHHHhcCChhHHHHhhhhccH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004114 357 LNNCKHEDDFAEASRSSQNNGT-LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEH 435 (773)
Q Consensus 357 I~~y~k~g~~~~A~~v~~~~~~-~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~ 435 (773)
+-.|.+.|+++.+.. |... ..-...|...++.++++..+.+.++.. ..|...|..|-..+...|++++|...++.
T Consensus 23 ~~~Y~~~g~~~~v~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~ 98 (198)
T PRK10370 23 VGSYLLSPKWQAVRA---EYQRLADPLHQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQ 98 (198)
T ss_pred HHHHHHcchHHHHHH---HHHHHhCccccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455666777666433 2110 000112223555666666666665542 33666777777777777777777777777
Q ss_pred HHHhCCCCCHHHHHHHHHH-HHhCCC--hHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 436 VERLLSPLRVSTYNGILKM-YSECDS--MDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 436 m~k~G~~pd~~tynaLI~a-y~k~G~--l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
..+... -+..++..+..+ |...|+ .++|.+++++..+. +..++..+...+.+.|++++|+..|+++.+.
T Consensus 99 Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 99 ALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777542 255566666665 355565 47777777776632 5667777777777777777777777777664
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.25 E-value=0.0033 Score=60.76 Aligned_cols=102 Identities=10% Similarity=0.012 Sum_probs=54.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 004114 516 GVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHG 593 (773)
Q Consensus 516 ~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G 593 (773)
.+-.++...|++++|...|...... -+.+...|..+-.++.+.|++++|...|+.. ...| +...|..+-.++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3344455555666665555554332 1123455555555556666666666666555 2223 3455555555666666
Q ss_pred ChhHHHHHHHHHHHcCCCCchHHHHc
Q 004114 594 NLELGDRCAEIVEQLDPSRLNEKSKA 619 (773)
Q Consensus 594 ~~e~A~~~~e~m~el~p~~~~~y~~a 619 (773)
+.++|...++...++.|+++..+...
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 66666666666666666665444333
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.23 E-value=0.094 Score=65.41 Aligned_cols=250 Identities=14% Similarity=0.029 Sum_probs=147.4
Q ss_pred HHHHhcCChhHHHHhhhh-------c-------cHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHH
Q 004114 358 NNCKHEDDFAEASRSSQN-------N-------GTLEQLDGLVKEGKVKEAIEVLGLLEKQCI---SV--DLPTFSQLMQ 418 (773)
Q Consensus 358 ~~y~k~g~~~~A~~v~~~-------~-------~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv---~P--d~~ty~~LL~ 418 (773)
..+...|++++|...... . ....+...+...|++++|...+.+.....- .+ -..++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 445567888887764211 0 001134455678888888888888764311 11 1234445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHh----CCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHhhc------C--CHhHHHHHH
Q 004114 419 ACGDAKALEEAKAVHEHVERL----LSP--L-RVSTYNGILKMYSECDSMDDAFSVFSNMTE------R--DLTSWDTMI 483 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~----G~~--p-d~~tynaLI~ay~k~G~l~eA~~lf~~M~~------~--d~~tyn~LI 483 (773)
++...|+++.|...+++.... +.. + ...++..+...+...|++++|...+++... + ...++..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 677788888888888776553 221 1 223344555666777888888888876542 1 123344455
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcc----hhhhH
Q 004114 484 TGFAKNGLGEDAVDIFSQFKQAGLK-PDDQIF-----IGVFSACSALGDVVEGMLHFESMSKDYGIVPSMK----HYVSI 553 (773)
Q Consensus 484 ~ay~~~G~~deAl~Lf~eM~~~Gv~-Pd~~Ty-----~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~----tyn~L 553 (773)
..+...|+.++|...+.+.....-. .....+ ...+..+...|+.+.|..++...... . ..... .+..+
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~ 697 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-E-FANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-C-CccchhHHHHHHHH
Confidence 6777788888888888877542110 011111 11223344578888888776654321 1 01111 12355
Q ss_pred HHHHHhCCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 554 VDMLGSTGYLDEALEFIEKM-------PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 554 I~~y~r~G~l~eA~~lf~~M-------~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
..++...|+.++|..++++. +..++ +.+...+-.++...|+.+.|...+....++.
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 66778888888888888765 22222 2355556667788899888888888777664
No 106
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.063 Score=58.23 Aligned_cols=94 Identities=19% Similarity=0.153 Sum_probs=56.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhh-HHHHHHhCCCHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCC
Q 004114 517 VFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVS-IVDMLGSTGYLDEALEFIEKMPMEPDVDV-WEKLMNLCRMHGN 594 (773)
Q Consensus 517 LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~-LI~~y~r~G~l~eA~~lf~~M~~~Pd~~t-y~~LI~a~~~~G~ 594 (773)
+..|.+..|...+|+++|-.+... .+ -+..+|.+ |..+|.++++.+.|++++-+|.-..+..+ ...+..-|-+.+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~e 476 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANE 476 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 344555667777777777555221 12 23445544 44567777777777777777742223333 3334446777777
Q ss_pred hhHHHHHHHHHHHcCCCC
Q 004114 595 LELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 595 ~e~A~~~~e~m~el~p~~ 612 (773)
+--|.+++++++.++|..
T Consensus 477 FyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 477 FYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHhhhHHHccCCCc
Confidence 777777777777777654
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.13 E-value=0.01 Score=57.33 Aligned_cols=108 Identities=14% Similarity=-0.017 Sum_probs=57.7
Q ss_pred HHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC
Q 004114 467 VFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP 545 (773)
Q Consensus 467 lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P 545 (773)
+|++..+-+...+..+...+...|++++|+..|+..... .| +..++..+-.+|...|++++|...|....+- -+.
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~ 90 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DAS 90 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCC
Confidence 333333333333444555555666666666666665543 23 3445555555666666666666666655432 222
Q ss_pred CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC
Q 004114 546 SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD 578 (773)
Q Consensus 546 d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd 578 (773)
+...+..+-.++.+.|+.++|.+.|+.. .+.|+
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4555555666666666666666666554 33444
No 108
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.11 E-value=0.0035 Score=57.60 Aligned_cols=77 Identities=10% Similarity=0.116 Sum_probs=68.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCI-SVDLPTFSQLMQACGDAK--------ALEEAKAVHEHVERLLSPLRVSTYNGI 451 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv-~Pd~~ty~~LL~a~~~~g--------~le~A~~l~~~m~k~G~~pd~~tynaL 451 (773)
.|..+...+++.....+|..+++.|+ .|+..+|+.+|.+.+++. ++-..+.+++.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 56677777999999999999999999 999999999999998764 355788899999999999999999999
Q ss_pred HHHHHh
Q 004114 452 LKMYSE 457 (773)
Q Consensus 452 I~ay~k 457 (773)
|..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 998876
No 109
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.07 E-value=0.15 Score=55.25 Aligned_cols=224 Identities=14% Similarity=0.127 Sum_probs=160.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC------------CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHH
Q 004114 384 GLVKEGKVKEAIEVLGLLEKQCIS------------VDL--PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYN 449 (773)
Q Consensus 384 a~~~~G~~~eAl~lf~~M~~~Gv~------------Pd~--~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tyn 449 (773)
.+.+.|.+++|..=|+..+..... +-. ......+..+.-.|+...|......+++.- +.|+..|.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 456788888888888887765210 001 112234445566788888999888888863 45888888
Q ss_pred HHHHHHHhCCChHHHHHHHHHhh---cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-------HH-
Q 004114 450 GILKMYSECDSMDDAFSVFSNMT---ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIG-------VF- 518 (773)
Q Consensus 450 aLI~ay~k~G~l~eA~~lf~~M~---~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~-------LL- 518 (773)
.-.++|.+.|++..|+.=+.... ..++.++--+-..+-..|+.+.++...++-++ +.||....-. +.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHH
Confidence 88999999999999987665544 34667777778888889999999999988876 5677642211 11
Q ss_pred -----HHHHcCCChHHHHHHHHHHHHhcCCCCC-----cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 004114 519 -----SACSALGDVVEGMLHFESMSKDYGIVPS-----MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLM 586 (773)
Q Consensus 519 -----~a~~~~G~~deA~~if~~M~~~~Gi~Pd-----~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI 586 (773)
......+++-++....+.+.+. .|. ...+..|-.++...|.+.+|.+...+. .+.|| +.++.--.
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 1223456666666666655443 333 344556677788889999999887766 66676 88888888
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 587 NLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 587 ~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
.||....+++.|..-++...++++++.
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 999999999999999999999998873
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.026 Score=66.60 Aligned_cols=237 Identities=15% Similarity=0.118 Sum_probs=158.0
Q ss_pred CCCHHHHHHHHH--HHHhcCChhHHHHhhhh----ccHHHHHHHHHHcCCHHHHHHHHHHHHHC-C--------CCCCHH
Q 004114 347 IQNGMMASQVLN--NCKHEDDFAEASRSSQN----NGTLEQLDGLVKEGKVKEAIEVLGLLEKQ-C--------ISVDLP 411 (773)
Q Consensus 347 ~pd~~~~n~LI~--~y~k~g~~~~A~~v~~~----~~~~~LI~a~~~~G~~~eAl~lf~~M~~~-G--------v~Pd~~ 411 (773)
..|..|-.++++ .|...|++|+|.+.+.+ ..+..|.++|++..+++-|.-.+..|... | -.|+ .
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 457778888875 57788999999884322 12223888899988888888777777432 1 1222 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-CHhHHHHHHHHHHHcC
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER-DLTSWDTMITGFAKNG 490 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~-d~~tyn~LI~ay~~~G 490 (773)
+=..+.-.....|.+++|+.+|.+-++. ..|=..|-..|.+++|.++-+.=..- --.||-....-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 2122222245789999999999987763 34556777899999999887642211 1235655566666677
Q ss_pred ChHHHHHHHHH----------HHHCC---------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhh
Q 004114 491 LGEDAVDIFSQ----------FKQAG---------LKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYV 551 (773)
Q Consensus 491 ~~deAl~Lf~e----------M~~~G---------v~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn 551 (773)
+.+.|++.|++ |+... -+-|...|..--.-+-..|.+|.|+.+|... ++ |-
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-~D---------~f 942 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-KD---------YF 942 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-hh---------hh
Confidence 78888777765 22221 1123333333333444678889888888765 22 56
Q ss_pred hHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004114 552 SIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~ 606 (773)
+|+...|-.|+.++|-++-++-+ |....-.|.+.|-..|++.+|..++.+..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 78899999999999999999876 55666677778888888777777665543
No 111
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.01 E-value=0.02 Score=53.70 Aligned_cols=100 Identities=10% Similarity=0.084 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHc
Q 004114 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKN 489 (773)
Q Consensus 413 y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~ 489 (773)
...+...+...|+.++|.+.++.+...+ +.+...+..+...|.+.|+.++|..+|+...+ .+..+|..+-..|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 4444455556666666666666665543 23455566666666666666666666665542 2445555555666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHH
Q 004114 490 GLGEDAVDIFSQFKQAGLKPDDQIFI 515 (773)
Q Consensus 490 G~~deAl~Lf~eM~~~Gv~Pd~~Ty~ 515 (773)
|++++|+..|++..+. .|+...+.
T Consensus 99 g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 99 GEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred CCHHHHHHHHHHHHHh--ccccchHH
Confidence 6666666666665553 34444433
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.01 E-value=0.077 Score=59.93 Aligned_cols=180 Identities=13% Similarity=0.046 Sum_probs=124.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHH
Q 004114 407 SVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMI 483 (773)
Q Consensus 407 ~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI 483 (773)
.||...+...+.+.........+..++.+..+.+ -...-|..-+ .+...|+.++|+..++.+.. | |+.-+....
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~ 347 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAG 347 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455556666665554444444444443333311 1222333333 34457889999999998763 4 677777888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCC
Q 004114 484 TGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY 562 (773)
Q Consensus 484 ~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~ 562 (773)
..+.+.++.++|.+.++++.. ..|+ ......+-.++.+.|+..+|+.+++..... .+-|...|..|..+|...|+
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 348 DILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--DPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHhCc
Confidence 899999999999999999887 4677 344566677888999999999988887664 56678899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 563 LDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 563 l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
..+|..-.. .++...|+++.|...+....+.
T Consensus 424 ~~~a~~A~A---------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 424 RAEALLARA---------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred hHHHHHHHH---------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 888876543 4456678888887777666554
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.00 E-value=0.057 Score=66.28 Aligned_cols=56 Identities=9% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
.+-.|..+|-+.|+.++|..+++++.+ .|..+-|-+...|+.. +.++|+.++.+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 444455555555555555555555543 1444555555555555 5555555555443
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.00 E-value=0.15 Score=63.63 Aligned_cols=225 Identities=12% Similarity=0.034 Sum_probs=145.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCC-CCHHHHHHHHHH
Q 004114 384 GLVKEGKVKEAIEVLGLLEKQCISVDL----PTFSQLMQACGDAKALEEAKAVHEHVERL----LSP-LRVSTYNGILKM 454 (773)
Q Consensus 384 a~~~~G~~~eAl~lf~~M~~~Gv~Pd~----~ty~~LL~a~~~~g~le~A~~l~~~m~k~----G~~-pd~~tynaLI~a 454 (773)
.+...|++++|...+++..+.--..+. .....+..++...|++++|...+.+.... |.. ....+...+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 456789999999999988763111122 23444555667889999999999888754 211 112345556677
Q ss_pred HHhCCChHHHHHHHHHhhcC-----------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHH
Q 004114 455 YSECDSMDDAFSVFSNMTER-----------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA--GLKPD--DQIFIGVFS 519 (773)
Q Consensus 455 y~k~G~l~eA~~lf~~M~~~-----------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~--Gv~Pd--~~Ty~~LL~ 519 (773)
+...|++++|...+++..+. ....+..+...+...|++++|...+.+.... ...+. ..++..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88899999999998876531 1223445556677789999999999887553 11222 234444556
Q ss_pred HHHcCCChHHHHHHHHHHHHhcCCCCCcchh-----hhHHHHHHhCCCHHHHHHHHHhCCC-C-CC----HHHHHHHHHH
Q 004114 520 ACSALGDVVEGMLHFESMSKDYGIVPSMKHY-----VSIVDMLGSTGYLDEALEFIEKMPM-E-PD----VDVWEKLMNL 588 (773)
Q Consensus 520 a~~~~G~~deA~~if~~M~~~~Gi~Pd~~ty-----n~LI~~y~r~G~l~eA~~lf~~M~~-~-Pd----~~ty~~LI~a 588 (773)
.....|+.++|...+.....-..-......+ ...+..+...|+.+.|.+++..... . .. ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7778999999999888774421111111111 1122445668999999999877621 1 11 1124456667
Q ss_pred HHHcCChhHHHHHHHHHHHc
Q 004114 589 CRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 589 ~~~~G~~e~A~~~~e~m~el 608 (773)
+...|+.++|...++...+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 701 QILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88899999998888877654
No 115
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.29 Score=59.38 Aligned_cols=199 Identities=13% Similarity=0.176 Sum_probs=114.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+......++-+++|+.+|++... +......||. ..+.++.|.+.-+.. -...+|..|..+-...|.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCc
Confidence 45556677788888888876522 2333333332 234455555544332 133467777777777777
Q ss_pred hHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH-----
Q 004114 461 MDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFE----- 535 (773)
Q Consensus 461 l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~----- 535 (773)
+.+|++-|-+ ..|...|.-+|....+.|.+++-...+...++..-+|... +.||-||++.+++.+.++++.
T Consensus 1120 v~dAieSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A 1195 (1666)
T KOG0985|consen 1120 VKDAIESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVA 1195 (1666)
T ss_pred hHHHHHHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCch
Confidence 7777666644 3355566677777777777777666665555555555433 355666666666555443321
Q ss_pred -----------H-HHHhc-CCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 004114 536 -----------S-MSKDY-GIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDR 600 (773)
Q Consensus 536 -----------~-M~~~~-Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~ 600 (773)
. |-+.. =+-.++..|.-|...+...|.+..|.+.-++.. +..||.-+-.||...+.+..|.-
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn---s~ktWK~VcfaCvd~~EFrlAQi 1270 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN---STKTWKEVCFACVDKEEFRLAQI 1270 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHhchhhhhHHHh
Confidence 0 00000 000123345566666777777777776666543 56788888888887777766643
No 116
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.98 E-value=0.013 Score=66.01 Aligned_cols=117 Identities=16% Similarity=0.115 Sum_probs=56.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
|+..+...++++.|+++|+++.+.. |+. ...|++.+...++-.+|.+++.+.++.. +-+......-.+.|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 4444444555556666666655542 332 2234444444445555555555554331 2234444444444555555
Q ss_pred hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQF 502 (773)
Q Consensus 461 l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM 502 (773)
.+.|+.+.+++.+ | +-.+|..|..+|...|++++|+..+..|
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 5555555555542 2 3335555555555555555555555443
No 117
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=0.83 Score=51.69 Aligned_cols=204 Identities=14% Similarity=0.098 Sum_probs=110.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHH---HHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDL-------PTFSQ---LMQACGDAKALEEAKAVHEHVERLLSPLRVSTYN 449 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~-------~ty~~---LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tyn 449 (773)
..+.---..|+.+...++|++.... ++|-. ..|.= .+-.=....+.+.++++++..++. ++....|+.
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFa 404 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFA 404 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHH
Confidence 3444445556666666777666554 33311 11111 111112445666677777666662 444455666
Q ss_pred HHHHHHH----hCCChHHHHHHHHHhh--cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004114 450 GILKMYS----ECDSMDDAFSVFSNMT--ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA 523 (773)
Q Consensus 450 aLI~ay~----k~G~l~eA~~lf~~M~--~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~ 523 (773)
.|--+|+ ++.++..|.+++-... .|-..+|-..|..=.+.+.+|.+..||++.++-+. -+..+|......=..
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~ 483 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETS 483 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHH
Confidence 5555554 3566667776665544 35555666666666666777777777777666432 144555555555556
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 004114 524 LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLM 586 (773)
Q Consensus 524 ~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI 586 (773)
.|+.|.|..+|.-....--+..-...|-+.|+-=...|.+++|..+++.+ ...+.+.+|-++.
T Consensus 484 LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 484 LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 67777777777655443112222233444444445666777777776665 2223334554443
No 118
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.97 E-value=0.02 Score=61.69 Aligned_cols=136 Identities=15% Similarity=0.191 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHH
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAG-LKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVD 555 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G-v~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~ 555 (773)
.+|-.+|...-+.+..+.|..+|.+.++.+ +..+.....++|. +...++.+.|..+|+...+. +..+...|...|+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888888888888887543 2333333344443 33356777799999998887 4456778889999
Q ss_pred HHHhCCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 556 MLGSTGYLDEALEFIEKM-PMEPD----VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 556 ~y~r~G~l~eA~~lf~~M-~~~Pd----~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
.+.+.++.+.|..+|++. ...|. ..+|...|..=.+.|+++.+..+.+.+.++-|++...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999987 32333 3599999999999999999999999999998876533
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.93 E-value=0.11 Score=63.95 Aligned_cols=208 Identities=13% Similarity=0.109 Sum_probs=132.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhhhccHH----------------------------HHHHHHHHcCCHHHHHHHHHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQNNGTL----------------------------EQLDGLVKEGKVKEAIEVLGL 400 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~----------------------------~LI~a~~~~G~~~eAl~lf~~ 400 (773)
+...+-.||..|-..+++++|.++.. .... .++..+....++..+..+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~-~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICE-EHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHH
Confidence 34567889999989999999888632 0000 123333333334333333333
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHH
Q 004114 401 LEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWD 480 (773)
Q Consensus 401 M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn 480 (773)
|...+ -+...+-.|..+|-+.|..++|..+++++++.. +-++.+.|.+...|+.. ++++|+.++.+...+
T Consensus 109 i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------ 178 (906)
T PRK14720 109 ILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------ 178 (906)
T ss_pred HHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------
Confidence 33321 123567778888889999999999999999987 45788999999999999 999999999875433
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHh
Q 004114 481 TMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF-IGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGS 559 (773)
Q Consensus 481 ~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty-~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r 559 (773)
|....++.+++++|.++... .|+.+.+ ..++. .+....|..--+.++-.|...|-.
T Consensus 179 -----~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 179 -----FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred -----HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccchhHHHHHHHHHHHhh
Confidence 77777899999999998874 3444333 22222 222211222223344455566667
Q ss_pred CCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004114 560 TGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCR 590 (773)
Q Consensus 560 ~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~ 590 (773)
..+++++.++|+.+ ...| |.....-|+..|.
T Consensus 236 ~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 236 LEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 77777777777766 3333 3444455555554
No 120
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.92 E-value=0.19 Score=57.50 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhCCChHHHHHHH
Q 004114 391 VKEAIEVLGLLEKQ-CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL-RVSTYNGILKMYSECDSMDDAFSVF 468 (773)
Q Consensus 391 ~~eAl~lf~~M~~~-Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~p-d~~tynaLI~ay~k~G~l~eA~~lf 468 (773)
.+....++.+++.. .+.|+ .+|..+|+..-+..-++.|+.+|.+..+.+..+ ++.+++++|.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 33444455555433 23333 456777777777777888888888777776655 67777778777774 6677777777
Q ss_pred HHhhcC--CH-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHhcC-
Q 004114 469 SNMTER--DL-TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD--QIFIGVFSACSALGDVVEGMLHFESMSKDYG- 542 (773)
Q Consensus 469 ~~M~~~--d~-~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~--~Ty~~LL~a~~~~G~~deA~~if~~M~~~~G- 542 (773)
+--.++ |. .--...++-+...++-.-|..||++.+..++.||. ..|..+|.-=+.-|++..+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 744432 33 33355666667777777777777777777655554 4677777777777777777777666655544
Q ss_pred -CCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 543 -IVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 543 -i~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
..+...+-..+++.|.-.++...-..-++.|
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 3444444455666665555444333333333
No 121
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.92 E-value=0.29 Score=56.98 Aligned_cols=196 Identities=13% Similarity=0.297 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC----------------------ChHHHHHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD----------------------SMDDAFSVFS 469 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G----------------------~l~eA~~lf~ 469 (773)
.|++|.+-|.+.|.++.|..++++.+..- .++.-++.+-++|+.-. +++-...-|+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 57777777888888888888887766642 34444555555554311 1222223333
Q ss_pred HhhcC---------------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHcCCChH
Q 004114 470 NMTER---------------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD------DQIFIGVFSACSALGDVV 528 (773)
Q Consensus 470 ~M~~~---------------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd------~~Ty~~LL~a~~~~G~~d 528 (773)
.+..+ ++.+|..-+..+ .|+..+-...|.+..+. +.|- ...|..+.+-|-..|+++
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 32211 333444333332 46667777777777653 3332 234677777788889999
Q ss_pred HHHHHHHHHHHhcCCCC--C-cchhhhHHHHHHhCCCHHHHHHHHHhCCCC--------------------CCHHHHHHH
Q 004114 529 EGMLHFESMSKDYGIVP--S-MKHYVSIVDMLGSTGYLDEALEFIEKMPME--------------------PDVDVWEKL 585 (773)
Q Consensus 529 eA~~if~~M~~~~Gi~P--d-~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~--------------------Pd~~ty~~L 585 (773)
.|+.+|++..+. ..+- + ..+|..-.++=.+..+++.|++++...-.. .+..+|..+
T Consensus 405 ~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 405 DARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999998876543 1111 1 356666667777888888888888766111 134567777
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 586 MNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 586 I~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
++.--..|-++....+++.+.++.--.|
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTP 511 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATP 511 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCH
Confidence 7777777888888888888887754443
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.90 E-value=0.12 Score=54.30 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=75.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcC
Q 004114 414 SQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNG 490 (773)
Q Consensus 414 ~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G 490 (773)
..+-.++...|+-+....+....... ...|.....+++....+.|++.+|+..|.+... +|..+|+.+-.+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 33444444455555544444432221 223444444455555555666666666655543 25555555555666666
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHH
Q 004114 491 LGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEF 569 (773)
Q Consensus 491 ~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~l 569 (773)
+.++|..-|.+..+. .|+ ...++.|.-.+.-.|+.+.|..++...... -.-|..+-..|.-.....|++++|.++
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 666655555555442 222 233444444455555555555555544322 122444444555555555555555555
Q ss_pred HH
Q 004114 570 IE 571 (773)
Q Consensus 570 f~ 571 (773)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 44
No 123
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.89 E-value=0.0088 Score=55.06 Aligned_cols=81 Identities=11% Similarity=0.175 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHhcCCCCCcc
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPDDQIFIGVFSACSALG--------DVVEGMLHFESMSKDYGIVPSMK 548 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd~~Ty~~LL~a~~~~G--------~~deA~~if~~M~~~~Gi~Pd~~ 548 (773)
|-...|..+...+++.+...+|+.+++.|+ .|+..+|+.+|.+.++.. ++-+.+.+|..|... +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 445667777777999999999999999999 999999999999987653 233456777888766 7888888
Q ss_pred hhhhHHHHHHh
Q 004114 549 HYVSIVDMLGS 559 (773)
Q Consensus 549 tyn~LI~~y~r 559 (773)
+|+.+|..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888887765
No 124
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.82 E-value=0.059 Score=51.85 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=61.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHhCCCh
Q 004114 387 KEGKVKEAIEVLGLLEKQCISVD---LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRV--STYNGILKMYSECDSM 461 (773)
Q Consensus 387 ~~G~~~eAl~lf~~M~~~Gv~Pd---~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~--~tynaLI~ay~k~G~l 461 (773)
..++...+.+.++.+....- -+ ....-.+...+...|++++|...|+.++.....+.. ...-.|...+...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 36666666666666665421 11 112222334555667777777777776665422221 2333345556666666
Q ss_pred HHHHHHHHHhhcC--CHhHHHHHHHHHHHcCChHHHHHHHHH
Q 004114 462 DDAFSVFSNMTER--DLTSWDTMITGFAKNGLGEDAVDIFSQ 501 (773)
Q Consensus 462 ~eA~~lf~~M~~~--d~~tyn~LI~ay~~~G~~deAl~Lf~e 501 (773)
++|+.+++....+ ....+..+-..|.+.|+.++|...|++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666554432 233444555666666666666666654
No 125
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=96.80 E-value=0.0013 Score=45.53 Aligned_cols=27 Identities=33% Similarity=0.695 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE 473 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~ 473 (773)
+|++||++|++.|++++|.++|++|.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 344444444444444444444444443
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.76 E-value=0.064 Score=56.21 Aligned_cols=151 Identities=15% Similarity=0.091 Sum_probs=97.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSM 461 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l 461 (773)
-..+.-.|+-+.++.+..+.... ..-|........+...+.|++..|...+.+.... -++|..+|+.+--+|.+.|+.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 33444555555555555443322 2234445555677777777777777777776654 356777777777777777777
Q ss_pred HHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 004114 462 DDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFE 535 (773)
Q Consensus 462 ~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~ 535 (773)
++|..-|.+..+ .+....|.|.-.|.-.|+.+.|..++......+.. |...-..|..+....|++++|+.+..
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777776653 25566677777777777777777777777665433 44445556666677777777776543
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.73 E-value=0.033 Score=53.61 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=37.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCC
Q 004114 484 TGFAKNGLGEDAVDIFSQFKQAGLKPDD--QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561 (773)
Q Consensus 484 ~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~--~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G 561 (773)
..+...|++++|...|+........|.. .....|...+...|++++|+.+++.... -......+..+-++|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHHHCC
Confidence 4445555555555555555554322211 1222334444455555555555533211 1112223334445555555
Q ss_pred CHHHHHHHHH
Q 004114 562 YLDEALEFIE 571 (773)
Q Consensus 562 ~l~eA~~lf~ 571 (773)
+.++|...|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 5555555554
No 128
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.72 E-value=0.35 Score=53.14 Aligned_cols=104 Identities=22% Similarity=0.232 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG 558 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~ 558 (773)
.+..|.-+...|....|.++..+.+ .||..-|-..|.+++..++|++-..+..+ +-.+.-|..++++|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHH
Confidence 3444555555555555555544432 25555555566666666666554443211 112345555666666
Q ss_pred hCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 004114 559 STGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDR 600 (773)
Q Consensus 559 r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~ 600 (773)
+.|...+|..++..++ + ..-+..|.+.|++.+|..
T Consensus 249 ~~~~~~eA~~yI~k~~---~----~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP---D----EERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred HCCCHHHHHHHHHhCC---h----HHHHHHHHHCCCHHHHHH
Confidence 6666666666655532 1 233444555555555533
No 129
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.71 E-value=0.0094 Score=60.99 Aligned_cols=98 Identities=12% Similarity=0.228 Sum_probs=65.1
Q ss_pred HHHHHHHh--hcCCHhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-----------
Q 004114 464 AFSVFSNM--TERDLTSWDTMITGFAKN-----GLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALG----------- 525 (773)
Q Consensus 464 A~~lf~~M--~~~d~~tyn~LI~ay~~~-----G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G----------- 525 (773)
-...|+.. ..+|-.+|..+|..|.+. |.++=....++.|.+-|+.-|..+|+.||..+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556665 466778888888887654 677888888888888888888888988888765422
Q ss_pred -----ChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCC
Q 004114 526 -----DVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY 562 (773)
Q Consensus 526 -----~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~ 562 (773)
..+-|++++++|.. +|+-||.+++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 23445555555533 3555555555555555555443
No 130
>PLN02789 farnesyltranstransferase
Probab=96.68 E-value=0.26 Score=54.25 Aligned_cols=190 Identities=12% Similarity=0.115 Sum_probs=130.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCCh--H
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD-SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLG--E 493 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G-~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~--d 493 (773)
+...+..++|+.+..++++... -+..+|+..-.++.+.| ++++|+..++++.+ ++..+|+.---.+.+.|.. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3445678899999999888642 24456666666667777 68999999998874 3666788666666666763 7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC---CCH----HHH
Q 004114 494 DAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST---GYL----DEA 566 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~---G~l----~eA 566 (773)
+++.++++|.+...+ +..+|....-++...|+++++++.++++.+. . .-+...|+...-++.+. |.. +++
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHH
Confidence 889999999876433 5678888888888999999999999999775 2 23455666555555444 222 456
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHcCCCCc
Q 004114 567 LEFIEKM-PMEP-DVDVWEKLMNLCRMHG----NLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 567 ~~lf~~M-~~~P-d~~ty~~LI~a~~~~G----~~e~A~~~~e~m~el~p~~~ 613 (773)
.++..++ ...| |...|+.+-..+...+ ....|..+...+.+..|...
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 6666444 4455 5778888888887743 33456666666666565553
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.19 Score=52.59 Aligned_cols=161 Identities=17% Similarity=0.268 Sum_probs=99.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcC-----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTER-----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS 522 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~~-----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~ 522 (773)
|--++-+...+|+.+.|...++.+..+ -+.-..+| -+-..|.+++|+++|+.+++.. +-|.+++.-=|...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 333444444555555555555554421 11111111 1233577888888888887765 345566665555555
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC---ChhH
Q 004114 523 ALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHG---NLEL 597 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G---~~e~ 597 (773)
..|+--+|++.+....+. +.-|.+.|.-|.+.|...|++++|.-.+++| -+.|- ...+..+...+-..| +++.
T Consensus 132 a~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 566666777777776664 6678888888999999999999998888888 33443 333444444433333 5566
Q ss_pred HHHHHHHHHHcCCCCc
Q 004114 598 GDRCAEIVEQLDPSRL 613 (773)
Q Consensus 598 A~~~~e~m~el~p~~~ 613 (773)
|.+.++...++.|.+.
T Consensus 210 arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHhChHhH
Confidence 6777777778877553
No 132
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.67 E-value=0.017 Score=65.35 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=98.6
Q ss_pred HHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004114 397 VLGLLEK---QCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL--LSPLRVSTYNGILKMYSECDSMDDAFSVFSNM 471 (773)
Q Consensus 397 lf~~M~~---~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~--G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M 471 (773)
++..|.+ .+...+...+..++..+....+++.+..++-..... ....-..|..++|+.|.+.|..++|+.++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5555542 345667888888888888888889998888777765 22222334568999999999999998888754
Q ss_pred hc----CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 004114 472 TE----RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL 524 (773)
Q Consensus 472 ~~----~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~ 524 (773)
.. ||..|+|.||+.+.+.|++..|.++..+|.....-.+..|+...+.+|.+-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 32 688899999999999999999999998888877777778888777777765
No 133
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.66 E-value=0.043 Score=62.89 Aligned_cols=225 Identities=14% Similarity=0.137 Sum_probs=166.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
..-.-+.+.|++.+|.-+|+...... +-+...|.-|-..-+..++-..|+..+.+.++.. +-+..+.-+|.-.|...|
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhh
Confidence 35556789999999999999988773 2256688888878888888888888888888753 225677788888899999
Q ss_pred ChHHHHHHHHHhhc--C----------CHhHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHcCCC
Q 004114 460 SMDDAFSVFSNMTE--R----------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQ-AGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 460 ~l~eA~~lf~~M~~--~----------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~-~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
.-.+|+++|+.... | +...=+. +.+.....+.+..++|-++.. .+.++|......|--.|--.|.
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 99999999987642 1 0000000 222223334556667766644 5544666666666666778899
Q ss_pred hHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHH
Q 004114 527 VVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAE 603 (773)
Q Consensus 527 ~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e 603 (773)
+++|...|+.... +.| |...||-|-..++...+-++|..-+.+. .++|. +.++..|--.|...|.+++|.+.+-
T Consensus 446 fdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 9999999998754 456 6789999999999999999999999877 77887 5577778888999999999987777
Q ss_pred HHHHcCCC
Q 004114 604 IVEQLDPS 611 (773)
Q Consensus 604 ~m~el~p~ 611 (773)
....|.+.
T Consensus 523 ~AL~mq~k 530 (579)
T KOG1125|consen 523 EALSMQRK 530 (579)
T ss_pred HHHHhhhc
Confidence 66666544
No 134
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.63 E-value=0.022 Score=64.49 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=88.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQ--CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~--Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~ 458 (773)
++..+....++++|.+++.+.+.. ....-..|..++|+.|.+.|..+.++.++..=...|+-||..++|.||+++.+.
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~ 151 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKK 151 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhc
Confidence 566666777888899999888765 333344566799999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhcC----CHhHHHHHHHHHHHc
Q 004114 459 DSMDDAFSVFSNMTER----DLTSWDTMITGFAKN 489 (773)
Q Consensus 459 G~l~eA~~lf~~M~~~----d~~tyn~LI~ay~~~ 489 (773)
|++..|.+|...|... +..|+...+.+|.+-
T Consensus 152 ~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 152 GNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999888732 456666666666555
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.63 E-value=0.031 Score=50.54 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=45.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 004114 516 GVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD----VDVWEKLMNLC 589 (773)
Q Consensus 516 ~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd----~~ty~~LI~a~ 589 (773)
.+...+...|++++|...|..+.....-.+ ....+..+..++.+.|++++|.+.|+.+ ...|+ ..++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 333444445555555555555443211000 0123333455555555555555555544 11122 23444555555
Q ss_pred HHcCChhHHHHHHHHHHHcCCCC
Q 004114 590 RMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 590 ~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
...|+.+.|...++.+.+..|++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCC
Confidence 56666666666666666655554
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.62 E-value=0.03 Score=52.44 Aligned_cols=97 Identities=9% Similarity=0.066 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 004114 514 FIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRM 591 (773)
Q Consensus 514 y~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~ 591 (773)
...+...+...|+.++|...|..+... -+.+...+..+...|.+.|++++|..+++.. ...| +..+|..+-..+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 444455555666666666666665442 1224455556666666666666666666655 2233 34555556666667
Q ss_pred cCChhHHHHHHHHHHHcCCCC
Q 004114 592 HGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 592 ~G~~e~A~~~~e~m~el~p~~ 612 (773)
.|+++.|...++...++.|++
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGEN 118 (135)
T ss_pred cCCHHHHHHHHHHHHHhcccc
Confidence 777777777777777666655
No 137
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.60 E-value=0.045 Score=56.14 Aligned_cols=105 Identities=14% Similarity=0.193 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHH
Q 004114 407 SVDLPTFSQLMQACGD-----AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDT 481 (773)
Q Consensus 407 ~Pd~~ty~~LL~a~~~-----~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~ 481 (773)
.-|..+|..++..+.+ .|.++-....+..|.+-|+.-|..+|+.||+.+=| |.+- ...+|..|-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 4578888888888864 47788899999999999999999999999999887 3322 222333221
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 482 MITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 482 LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
-- .-.+-+-|++|+++|...|+.||..|+..|+..+++.+.
T Consensus 113 --~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 --MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 123457799999999999999999999999999977664
No 138
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.59 E-value=0.022 Score=47.39 Aligned_cols=84 Identities=15% Similarity=0.269 Sum_probs=33.6
Q ss_pred HHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 004114 451 ILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDV 527 (773)
Q Consensus 451 LI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~ 527 (773)
+...+...|++++|..+|+++.+ | +..+|..+...+...+++++|+++|++...... .+..++..+...+...|+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhH
Confidence 33344444444444444444331 1 223344444444444444444444444433221 1112333333344444444
Q ss_pred HHHHHHHH
Q 004114 528 VEGMLHFE 535 (773)
Q Consensus 528 deA~~if~ 535 (773)
++|..++.
T Consensus 85 ~~a~~~~~ 92 (100)
T cd00189 85 EEALEAYE 92 (100)
T ss_pred HHHHHHHH
Confidence 44444443
No 139
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.58 E-value=1 Score=52.68 Aligned_cols=224 Identities=16% Similarity=0.158 Sum_probs=150.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHH
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDA 464 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA 464 (773)
++..|+-++|.+..+.-.+..++ +.++|..+--.+-...++++|...|....+.+- -+..++--|--.=+..|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhH
Confidence 45668888888887776665443 566777776667777889999999998888642 2455565554445566677766
Q ss_pred HHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHcCCChHHHHHHH
Q 004114 465 FSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG-LKPDDQIFIGVF------SACSALGDVVEGMLHF 534 (773)
Q Consensus 465 ~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G-v~Pd~~Ty~~LL------~a~~~~G~~deA~~if 534 (773)
...-....+ .....|..+..++...|....|..+.++....- -.|+...|.-.. .-..+.|.+++|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 666555543 256789999999999999999999999998764 346666554332 2345778889998877
Q ss_pred HHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHHcCCC
Q 004114 535 ESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCR--MHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 535 ~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~--~~G~~e~A~~~~e~m~el~p~ 611 (773)
..-... +.-....-....+.+.+.+++++|..++..+ .--||-.-|...+..+. -.+..+....++..+.+.-|.
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 655432 2222223335667888999999999999888 33577666665555444 334433334666666665544
Q ss_pred C
Q 004114 612 R 612 (773)
Q Consensus 612 ~ 612 (773)
.
T Consensus 287 ~ 287 (700)
T KOG1156|consen 287 H 287 (700)
T ss_pred c
Confidence 3
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.1 Score=54.94 Aligned_cols=159 Identities=11% Similarity=0.062 Sum_probs=103.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-
Q 004114 396 EVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER- 474 (773)
Q Consensus 396 ~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~- 474 (773)
++.+.+...-..-+..........|+..++.++|++..... . +..+...=+..+.|..+++-|+..+++|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34455554444444444445555688889999998877652 1 2223333345566777889999999999865
Q ss_pred CHhHHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchh
Q 004114 475 DLTSWDTMITGFA----KNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHY 550 (773)
Q Consensus 475 d~~tyn~LI~ay~----~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~ty 550 (773)
+-.|.+-|..++. -.+.+.+|.-+|++|-++ ..|+..+.+....+|...|++++|..++++...+ -.-+..+.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL 244 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETL 244 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHH
Confidence 3344444444443 346688899999998763 6788889999999999999999999888877654 22344444
Q ss_pred hhHHHHHHhCCCH
Q 004114 551 VSIVDMLGSTGYL 563 (773)
Q Consensus 551 n~LI~~y~r~G~l 563 (773)
..||.+-...|.-
T Consensus 245 ~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 245 ANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHhCCC
Confidence 4444444444443
No 141
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.15 Score=54.38 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHhh-cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004114 459 DSMDDAFSVFSNMT-ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ-AGLKPDDQIFIGVFSACSALGDVVEGMLHFES 536 (773)
Q Consensus 459 G~l~eA~~lf~~M~-~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~-~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~ 536 (773)
+++..+..+.++.+ +.+..+-+..-....+.|.+++|++-|....+ .|..| ...|+..+.-| +.++.+.|.++..+
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~iSE 203 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISE 203 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 44444444444444 22333333333333444555555555544433 23333 23344433322 33444444444444
Q ss_pred HHH
Q 004114 537 MSK 539 (773)
Q Consensus 537 M~~ 539 (773)
+++
T Consensus 204 Iie 206 (459)
T KOG4340|consen 204 IIE 206 (459)
T ss_pred HHH
Confidence 433
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.55 E-value=0.019 Score=47.72 Aligned_cols=91 Identities=19% Similarity=0.171 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG 558 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~ 558 (773)
|..+...+...|++++|+.+|+++.+.. ..+...+..+...+...+++++|..++....+. .+.+..++..+..++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 4556666667777777777777766542 112244555556666666666666666655432 1222345555555566
Q ss_pred hCCCHHHHHHHHHh
Q 004114 559 STGYLDEALEFIEK 572 (773)
Q Consensus 559 r~G~l~eA~~lf~~ 572 (773)
..|+.++|.+.+..
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 66666666655544
No 143
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.55 E-value=0.21 Score=57.08 Aligned_cols=166 Identities=12% Similarity=0.153 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-----CCHhHHHHHHHHHHHcCChHHHHHHH
Q 004114 426 LEEAKAVHEHVERL-LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE-----RDLTSWDTMITGFAKNGLGEDAVDIF 499 (773)
Q Consensus 426 le~A~~l~~~m~k~-G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~-----~d~~tyn~LI~ay~~~G~~deAl~Lf 499 (773)
.+....+++.+++. ...|+. +|..+|+.-.|..-++.|+.+|.+..+ .++..+++||.-||. ++.+-|..+|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 56666677776665 344444 788888888888889999999998874 277888999998884 5678888888
Q ss_pred HHHHHCCCCCCHHHH-HHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC--cchhhhHHHHHHhCCCHHHHHHHHHhC---
Q 004114 500 SQFKQAGLKPDDQIF-IGVFSACSALGDVVEGMLHFESMSKDYGIVPS--MKHYVSIVDMLGSTGYLDEALEFIEKM--- 573 (773)
Q Consensus 500 ~eM~~~Gv~Pd~~Ty-~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd--~~tyn~LI~~y~r~G~l~eA~~lf~~M--- 573 (773)
+-=++. -+|...| ...+.-+.+.++-..|+.+|++.... ++.|| ..+|..+|+-=...|++..+.++-+++
T Consensus 425 eLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 753332 2344434 55667777888888899999998877 77765 578999999889999999988887766
Q ss_pred -C--CCCCHHHHHHHHHHHHHcCChh
Q 004114 574 -P--MEPDVDVWEKLMNLCRMHGNLE 596 (773)
Q Consensus 574 -~--~~Pd~~ty~~LI~a~~~~G~~e 596 (773)
+ .++....-..+++-|.-.+...
T Consensus 502 f~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 502 FPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred cchhhcCCCChHHHHHHHHhhccccc
Confidence 2 2222223334455555444443
No 144
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.52 E-value=0.037 Score=59.61 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHH
Q 004114 411 PTFSQLMQACGDAKALEEAKAVHEHVERLL-SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGF 486 (773)
Q Consensus 411 ~ty~~LL~a~~~~g~le~A~~l~~~m~k~G-~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay 486 (773)
.+|..+|+.+-+.+.++.|+.+|.+.++.+ +..++.+..++|..++ .++.+.|.+||+...+ .+...|...|.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456667777777777777777777776442 2233333333333222 3455557777776653 3666677777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 487 AKNGLGEDAVDIFSQFKQAGLKPDD---QIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 487 ~~~G~~deAl~Lf~eM~~~Gv~Pd~---~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
...++.+.|..||++.... +.++. ..|...|.-=.+.|+++.+..+..++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776554 22222 2566666666666666666666666654
No 145
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.46 E-value=0.65 Score=54.20 Aligned_cols=256 Identities=14% Similarity=0.141 Sum_probs=149.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhh------hhccHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSS------QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQC------ISVDLPTFS 414 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~------~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~G------v~Pd~~ty~ 414 (773)
..-..+|...|......+-++-+.++. ......+-|..+++.+++++|-+.+...+... .+.+.-.|.
T Consensus 135 tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 135 TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 333445555565555666666666642 12222347888899999999998888775432 233444555
Q ss_pred HHHHHHHhcCCHHH---HHHHHHHHHHhCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHhhcC--CHhHHHHHHHHHH
Q 004114 415 QLMQACGDAKALEE---AKAVHEHVERLLSPLR--VSTYNGILKMYSECDSMDDAFSVFSNMTER--DLTSWDTMITGFA 487 (773)
Q Consensus 415 ~LL~a~~~~g~le~---A~~l~~~m~k~G~~pd--~~tynaLI~ay~k~G~l~eA~~lf~~M~~~--d~~tyn~LI~ay~ 487 (773)
-+....++.-+.-. +..++..++.+ -+| ...|++|.+-|.+.|.++.|..+|++.... ++.-|+.+-++|+
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHH
Confidence 55555554433322 22233333322 234 458999999999999999999999876543 4444555555554
Q ss_pred HcC----------------------ChHHHHHHHHHHHHCCC----------CCC-HHHHHHHHHHHHcCCChHHHHHHH
Q 004114 488 KNG----------------------LGEDAVDIFSQFKQAGL----------KPD-DQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 488 ~~G----------------------~~deAl~Lf~eM~~~Gv----------~Pd-~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
.-. +++-.+.-|+.+...+. .|+ +.+|..-+ -...|+..+-...|
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHH
Confidence 321 12223333333333210 011 11121111 12345666667777
Q ss_pred HHHHHhcCCCCC------cchhhhHHHHHHhCCCHHHHHHHHHhCCCCC--C----HHHHHHHHHHHHHcCChhHHHHHH
Q 004114 535 ESMSKDYGIVPS------MKHYVSIVDMLGSTGYLDEALEFIEKMPMEP--D----VDVWEKLMNLCRMHGNLELGDRCA 602 (773)
Q Consensus 535 ~~M~~~~Gi~Pd------~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~P--d----~~ty~~LI~a~~~~G~~e~A~~~~ 602 (773)
.+..+. +.|- ...|..+.+.|-..|+++.|..+|++.-..| . ..+|..-...=.++.+++.|.++.
T Consensus 371 teAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm 448 (835)
T KOG2047|consen 371 TEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLM 448 (835)
T ss_pred HHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 777664 5553 2457788999999999999999999882222 1 346666666666778888777766
Q ss_pred HHHHHc
Q 004114 603 EIVEQL 608 (773)
Q Consensus 603 e~m~el 608 (773)
+....+
T Consensus 449 ~~A~~v 454 (835)
T KOG2047|consen 449 RRATHV 454 (835)
T ss_pred HhhhcC
Confidence 655443
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.41 E-value=0.74 Score=55.56 Aligned_cols=222 Identities=14% Similarity=0.155 Sum_probs=142.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACG--DAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~--~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~ 458 (773)
=|......++++.|+....++.+. .|+. .|..+++|+. +.|..++|..+++.....+.. |..|..+|-.+|.+.
T Consensus 15 pi~d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 15 PIYDLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDL 90 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHH
Confidence 355667788899999999888876 4553 4566677664 788999999888877666544 788889999999999
Q ss_pred CChHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-------
Q 004114 459 DSMDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGED----AVDIFSQFKQAGLKPDDQIFIGVFSACSALG------- 525 (773)
Q Consensus 459 G~l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~de----Al~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G------- 525 (773)
++.++|..+++.... |+..--..+..+|++.+.+.+ |+++++- +.-....|-++++.....-
T Consensus 91 ~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred hhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccc
Confidence 999999999998874 555556666777887777654 4555542 3334466666666554332
Q ss_pred ---ChHHHHHHHHHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHh-C-CC--CCCHHHHHHHHHHHHHcCChhH
Q 004114 526 ---DVVEGMLHFESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEK-M-PM--EPDVDVWEKLMNLCRMHGNLEL 597 (773)
Q Consensus 526 ---~~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~-M-~~--~Pd~~ty~~LI~a~~~~G~~e~ 597 (773)
-+.-|.+.++.+.++-| +.. ..-.-.-+..+-..|+.++|++++.. . .. .-+...-+.-+..+...+++.+
T Consensus 166 ~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred cchhHHHHHHHHHHHhccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 23345666666666533 221 11111223345567889999998832 2 11 1123333445566666777776
Q ss_pred HHHHHHHHHHcCCCC
Q 004114 598 GDRCAEIVEQLDPSR 612 (773)
Q Consensus 598 A~~~~e~m~el~p~~ 612 (773)
..++...+.+..+++
T Consensus 245 l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 245 LFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHhCCcc
Confidence 666666666666665
No 147
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.35 E-value=0.23 Score=57.64 Aligned_cols=202 Identities=17% Similarity=0.152 Sum_probs=127.3
Q ss_pred HHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 383 DGLVKEGK--VKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 383 ~a~~~~G~--~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
++|.+..+ +-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|-++|. +.|.+ |-.+.||.....
T Consensus 606 kAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk---~~G~e------nRAlEmyTDlRM 673 (1081)
T KOG1538|consen 606 KAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK---RSGHE------NRALEMYTDLRM 673 (1081)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH---HcCch------hhHHHHHHHHHH
Confidence 45555443 34455557888899988998654 445778889999988885 45654 445667777677
Q ss_pred hHHHHHHHHHhh---------cC-----CHhHHHHHHHHHHHcCChHHHHHHHHH-----H-HHCCCCC---CHHHHHHH
Q 004114 461 MDDAFSVFSNMT---------ER-----DLTSWDTMITGFAKNGLGEDAVDIFSQ-----F-KQAGLKP---DDQIFIGV 517 (773)
Q Consensus 461 l~eA~~lf~~M~---------~~-----d~~tyn~LI~ay~~~G~~deAl~Lf~e-----M-~~~Gv~P---d~~Ty~~L 517 (773)
+|.|.+++..-. ++ ++.-=-+-...+...|+.++|+.+.-+ | .+-+-+. +..+...+
T Consensus 674 FD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~ 753 (1081)
T KOG1538|consen 674 FDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLC 753 (1081)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHH
Confidence 777776664321 11 111112334455566777776665422 1 1112222 33345544
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCC-CCCCHHH-----------HHHH
Q 004114 518 FSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMP-MEPDVDV-----------WEKL 585 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~-~~Pd~~t-----------y~~L 585 (773)
..-+-+...+..|.++|.+|-. ...++++....++|.+|..+-+..| +.||+.. +.-.
T Consensus 754 a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEA 823 (1081)
T KOG1538|consen 754 ATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEA 823 (1081)
T ss_pred HHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHH
Confidence 4445566777888899988832 2468899999999999999999984 4555432 3344
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 004114 586 MNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 586 I~a~~~~G~~e~A~~~~e~m~ 606 (773)
-.||.+.|+-.+|.++++.+-
T Consensus 824 qkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 824 QKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HHHHHHhcchHHHHHHHHHhh
Confidence 567888888888887777664
No 148
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.26 Score=56.89 Aligned_cols=215 Identities=15% Similarity=0.205 Sum_probs=118.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHH--HHHHHH--
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNG--ILKMYS-- 456 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tyna--LI~ay~-- 456 (773)
-|..+...|++++|+....+++..+ +-|...+..-+-++.+.+.+++|+.+.+. .+. ..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHH
Confidence 3566677778888888888877654 33455666666677777888888744332 211 111222 245554
Q ss_pred hCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFE 535 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~ 535 (773)
+.+++|+|+..++....-|..+-..=.-.+-+.|++++|+++|..+.+.+..- |...-..|+.+-.. -.+. +.
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~- 164 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LL- 164 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HH-
Confidence 57788888888885544444444444556677888888888888887665421 11112222221111 1111 11
Q ss_pred HHHHhcCCCCCcchhhhHH---HHHHhCCCHHHHHHHHHhC----------C------CCCCHH-HHHHHHHHHHHcCCh
Q 004114 536 SMSKDYGIVPSMKHYVSIV---DMLGSTGYLDEALEFIEKM----------P------MEPDVD-VWEKLMNLCRMHGNL 595 (773)
Q Consensus 536 ~M~~~~Gi~Pd~~tyn~LI---~~y~r~G~l~eA~~lf~~M----------~------~~Pd~~-ty~~LI~a~~~~G~~ 595 (773)
+.....| ..+|..+. -.+...|++.+|+++++.. + ++-.+. +---|.-.+...|+.
T Consensus 165 ---q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 165 ---QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred ---HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 1112333 22444333 3455678888888887654 0 001111 112234456677888
Q ss_pred hHHHHHHHHHHHcCCCC
Q 004114 596 ELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 596 e~A~~~~e~m~el~p~~ 612 (773)
++|..++..+.+..|-+
T Consensus 241 ~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 88888777776665554
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.23 E-value=0.11 Score=46.97 Aligned_cols=91 Identities=11% Similarity=0.009 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--CC----HhHHHHHHHHH
Q 004114 415 QLMQACGDAKALEEAKAVHEHVERLLSP--LRVSTYNGILKMYSECDSMDDAFSVFSNMTE--RD----LTSWDTMITGF 486 (773)
Q Consensus 415 ~LL~a~~~~g~le~A~~l~~~m~k~G~~--pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~d----~~tyn~LI~ay 486 (773)
.+...+.+.|++++|...+..+++.... .....+..+..++.+.|++++|..+|+.+.. |+ ..++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3334444455555555555555443210 0122333444555555555555555554432 11 22344444455
Q ss_pred HHcCChHHHHHHHHHHHHC
Q 004114 487 AKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 487 ~~~G~~deAl~Lf~eM~~~ 505 (773)
...|+.++|...++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555555543
No 150
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.23 E-value=0.18 Score=54.24 Aligned_cols=145 Identities=15% Similarity=0.274 Sum_probs=67.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHc-CChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHH
Q 004114 450 GILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKN-GLGEDAVDIFSQFKQ----AGLKPD--DQIFIGVFSACS 522 (773)
Q Consensus 450 aLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~-G~~deAl~Lf~eM~~----~Gv~Pd--~~Ty~~LL~a~~ 522 (773)
..++.|.+.|+...|-+++.++ -..|... |++++|++.|.+-.+ .+ .+. ..++..+...+.
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~l-----------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKEL-----------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHH-----------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 3344555566655555554443 2334344 566666666655433 12 111 123455555666
Q ss_pred cCCChHHHHHHHHHHHHhcCCCC-----Cc-chhhhHHHHHHhCCCHHHHHHHHHhC-CCCC----C--HHHHHHHHHHH
Q 004114 523 ALGDVVEGMLHFESMSKDYGIVP-----SM-KHYVSIVDMLGSTGYLDEALEFIEKM-PMEP----D--VDVWEKLMNLC 589 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~Gi~P-----d~-~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P----d--~~ty~~LI~a~ 589 (773)
+.|++++|..+|+++...+ +.. .+ ..|-..+-++...|++..|.+.|++. ...| + ......||.+|
T Consensus 167 ~l~~y~~A~~~~e~~~~~~-l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKC-LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTC-CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHh-hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 6777777777777665431 111 11 12223333455567777777777765 2222 1 23444555554
Q ss_pred HHcCChhHHHHHHHHHHHc
Q 004114 590 RMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 590 ~~~G~~e~A~~~~e~m~el 608 (773)
..|+.+....++..+..+
T Consensus 246 -~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 246 -EEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp -HTT-CCCHHHHCHHHTTS
T ss_pred -HhCCHHHHHHHHHHHccc
Confidence 345555555555444443
No 151
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=2.3 Score=49.42 Aligned_cols=175 Identities=13% Similarity=0.092 Sum_probs=102.9
Q ss_pred HHHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHH--------HHHHHHHcCCHHHHHHHH
Q 004114 327 SRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLE--------QLDGLVKEGKVKEAIEVL 398 (773)
Q Consensus 327 a~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~--------LI~a~~~~G~~~eAl~lf 398 (773)
...-|+.+......++..+ +-|...+-.=+-+.-..+++++|+.++..+.... =..++.+.+..++|+..+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 3455666666666666555 3344455555556667788888888755444322 233344778888888877
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-C--------------------------HHHHHH
Q 004114 399 GLLEKQCISVDL-PTFSQLMQACGDAKALEEAKAVHEHVERLLSPL-R--------------------------VSTYNG 450 (773)
Q Consensus 399 ~~M~~~Gv~Pd~-~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~p-d--------------------------~~tyna 450 (773)
. |+.++. .+...-...|-+.+++++|..+|+.+.+.+.+- | ..+|..
T Consensus 103 ~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 103 K-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYEL 177 (652)
T ss_pred h-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHH
Confidence 6 333332 244444555778888888888888886654310 0 112222
Q ss_pred H---HHHHHhCCChHHHHHHHHHhh--------cCC-----Hh-----HHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004114 451 I---LKMYSECDSMDDAFSVFSNMT--------ERD-----LT-----SWDTMITGFAKNGLGEDAVDIFSQFKQAGL 507 (773)
Q Consensus 451 L---I~ay~k~G~l~eA~~lf~~M~--------~~d-----~~-----tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv 507 (773)
+ .-.+...|++.+|+++++... +-| .. .---|.-.+-..|+.++|..+|...+....
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 2 223445678888888887662 111 11 111233455667888888888888777653
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.20 E-value=0.53 Score=50.65 Aligned_cols=128 Identities=16% Similarity=0.248 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhC-CChHHHHHHHHHhhc-----CC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCH
Q 004114 447 TYNGILKMYSEC-DSMDDAFSVFSNMTE-----RD----LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLK-----PDD 511 (773)
Q Consensus 447 tynaLI~ay~k~-G~l~eA~~lf~~M~~-----~d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~-----Pd~ 511 (773)
++..+-.+|-+. |++++|++.|.+..+ .. ..++.-+...+.+.|++++|+++|+++...-+. .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 444555666666 788888888876652 11 235667788899999999999999998775332 222
Q ss_pred H-HHHHHHHHHHcCCChHHHHHHHHHHHHh-cCCCCC--cchhhhHHHHHHh--CCCHHHHHHHHHhCC
Q 004114 512 Q-IFIGVFSACSALGDVVEGMLHFESMSKD-YGIVPS--MKHYVSIVDMLGS--TGYLDEALEFIEKMP 574 (773)
Q Consensus 512 ~-Ty~~LL~a~~~~G~~deA~~if~~M~~~-~Gi~Pd--~~tyn~LI~~y~r--~G~l~eA~~lf~~M~ 574 (773)
. .|...+-++...|++..|.+.|++.... .++..+ ......||+++-. ...+.+|..-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2 3333444556678999999999887432 122222 2344456666643 345777777777773
No 153
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.55 Score=57.10 Aligned_cols=234 Identities=12% Similarity=0.164 Sum_probs=150.4
Q ss_pred HHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHh----hhhccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004114 329 RQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRS----SQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQ 404 (773)
Q Consensus 329 ~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v----~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~ 404 (773)
..|+.+..+... +..+....+.||+- .+.++.|.+. -....|..+..+-.+.|.+.+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkk-----f~~n~~A~~VLie~---i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKK-----FDMNVSAIQVLIEN---IGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred hHHHHHHHHHHH-----hcccHHHHHHHHHH---hhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 444444444432 33444455555543 3455555542 12223334788888889999998877542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh------------
Q 004114 405 CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT------------ 472 (773)
Q Consensus 405 Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~------------ 472 (773)
-|+..|.-++.++.+.|.+++-...+....+..-+|.+. +.||-+|+|.+++.+-++++..--
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf 1205 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCF 1205 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHh
Confidence 277789999999999999999998888877777666654 578899999998888776542110
Q ss_pred -----c------CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhc
Q 004114 473 -----E------RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDY 541 (773)
Q Consensus 473 -----~------~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~ 541 (773)
+ .++.-|.-|...+...|.+..|.+.-++. -+..||.-+-.||...+.+.-|. | +
T Consensus 1206 ~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----i---C 1271 (1666)
T KOG0985|consen 1206 EEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----I---C 1271 (1666)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----h---c
Confidence 0 14445777777777777777776655432 35568888888888776654442 2 2
Q ss_pred CC--CCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 004114 542 GI--VPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMH 592 (773)
Q Consensus 542 Gi--~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~ 592 (773)
|+ .....-..-||..|-..|.+++...+++.- |++. ...+|+-|.-.|.+-
T Consensus 1272 GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1272 GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 33 223344556888888888888888888764 4432 344555555555544
No 154
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.07 E-value=0.34 Score=54.12 Aligned_cols=161 Identities=15% Similarity=0.138 Sum_probs=102.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhcC---CHh----HHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004114 450 GILKMYSECDSMDDAFSVFSNMTER---DLT----SWDTMITGFAK---NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFS 519 (773)
Q Consensus 450 aLI~ay~k~G~l~eA~~lf~~M~~~---d~~----tyn~LI~ay~~---~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~ 519 (773)
.|+-.|....+++..+++.+.|... ++. .---..-++-+ .|+.++|+.++..+....-.++..||..+-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888888888888888753 111 11123334555 6888888888888666666677777776665
Q ss_pred HHHc---------CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHH----HHHHHH---HhC----C---CC
Q 004114 520 ACSA---------LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD----EALEFI---EKM----P---ME 576 (773)
Q Consensus 520 a~~~---------~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~----eA~~lf---~~M----~---~~ 576 (773)
.|-. ...+++|...|. +.+.+.|+..+--.++..+..+|.-. ++.++- ..+ + -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~---kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYR---KGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHH---HHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5521 223666666665 33556666554444455555555322 222222 111 1 23
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 577 PDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 577 Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
.|-..+.+++.++.-.|+.+.|.++++.|.++.|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 5677788999999999999999999999999987663
No 155
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.04 E-value=0.54 Score=54.91 Aligned_cols=224 Identities=17% Similarity=0.137 Sum_probs=161.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 004114 387 KEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFS 466 (773)
Q Consensus 387 ~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~ 466 (773)
..+++...+.+.+..++. ..--..|....--.+...|+.++|....+.-++..+. +.+.|..+--.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 456677777777777663 2222334433333466789999999988877775433 55677777777777889999999
Q ss_pred HHHHhh--cC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcC
Q 004114 467 VFSNMT--ER-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYG 542 (773)
Q Consensus 467 lf~~M~--~~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~G 542 (773)
.|.... +| +...|--+--.=++.++++.......++.+. .|. ...|..+..+..-.|+...|..+.+...+...
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 998765 34 6667776666667788888888888888774 344 35678888888899999999999999877643
Q ss_pred CCCCcchhhhHH------HHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch
Q 004114 543 IVPSMKHYVSIV------DMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 543 i~Pd~~tyn~LI------~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~ 614 (773)
-.|+...|.-+. ..+.++|.+++|++.+.+- +..-| ...-.+-...+.+.+++|+|..++..+....|++..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 356666655443 3456789999999888776 21122 223344556678899999999999999999999963
No 156
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.56 Score=50.16 Aligned_cols=244 Identities=15% Similarity=0.110 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhhhccHH-------H--HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQNNGTL-------E--QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQA 419 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~-------~--LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a 419 (773)
+....+.|-.+|-+..++..|..-..-.... . -...+.+++.+.+|+++...|... |....-..-+.+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqa 119 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQA 119 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 4556677777888888887777632111110 0 245567788888999988877553 222222222222
Q ss_pred H--HhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC----CHhHHHHHHHHHHHcCChH
Q 004114 420 C--GDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER----DLTSWDTMITGFAKNGLGE 493 (773)
Q Consensus 420 ~--~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~----d~~tyn~LI~ay~~~G~~d 493 (773)
. -..+++..++.+.+++-..| +..+.+..--...|.|+.++|.+-|....+- ..+.||.-+.-| +.|+.+
T Consensus 120 AIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qya 195 (459)
T KOG4340|consen 120 AIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYA 195 (459)
T ss_pred HHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHH
Confidence 2 24566777777777654322 3333333444456788888888888877642 556777666555 456788
Q ss_pred HHHHHHHHHHHCCCC-------------CCHH----H----HHHHHHHH-------HcCCChHHHHHHHHHHHHhcCCCC
Q 004114 494 DAVDIFSQFKQAGLK-------------PDDQ----I----FIGVFSAC-------SALGDVVEGMLHFESMSKDYGIVP 545 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~-------------Pd~~----T----y~~LL~a~-------~~~G~~deA~~if~~M~~~~Gi~P 545 (773)
.|+++..++.++|++ ||+. | -..|+.|+ .+.++.+.|.+.+-.|.-+..-..
T Consensus 196 sALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~el 275 (459)
T KOG4340|consen 196 SALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEEL 275 (459)
T ss_pred HHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccC
Confidence 888888888877764 3321 1 12233322 345666666666655533222233
Q ss_pred Ccchhh--hHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 004114 546 SMKHYV--SIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRC 601 (773)
Q Consensus 546 d~~tyn--~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~ 601 (773)
|+.|.. +|.++=++-+.--+-+.++-.+ |+ -..|+..|+-.||+..-++.|..+
T Consensus 276 DPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPf--P~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 276 DPVTLHNQALMNMDARPTEGFEKLQFLLQQNPF--PPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred CchhhhHHHHhcccCCccccHHHHHHHHhcCCC--ChHHHHHHHHHHhhhHHHhHHHHH
Confidence 444433 3333333333322333333333 32 246777777778877777666444
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.02 E-value=0.17 Score=59.29 Aligned_cols=140 Identities=13% Similarity=0.024 Sum_probs=90.6
Q ss_pred CCHhHHHHHHHHHHHcCC-----hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcC--------CChHHHHHHHHHHHH
Q 004114 474 RDLTSWDTMITGFAKNGL-----GEDAVDIFSQFKQAGLKPDD-QIFIGVFSACSAL--------GDVVEGMLHFESMSK 539 (773)
Q Consensus 474 ~d~~tyn~LI~ay~~~G~-----~deAl~Lf~eM~~~Gv~Pd~-~Ty~~LL~a~~~~--------G~~deA~~if~~M~~ 539 (773)
.+...|..++.|.....+ .++|..+|++..+ ..|+- ..|..+..++... .++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 366677777766544322 5577777777766 34653 2333332222211 112233333332211
Q ss_pred hcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 540 DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 540 ~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
......+...|.++.-.+...|++++|...+++. .+.|+...|..+-..+...|+.++|...++...+++|..+..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 1012334567777777777789999999999887 667888889999999999999999999999999999988643
No 158
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.94 E-value=1.2 Score=49.12 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004114 512 QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRM 591 (773)
Q Consensus 512 ~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~ 591 (773)
.+.+..|.-|...|....|.++ .+++.+ |+..-|-..|.+|+..++|++-.++... +...+-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl----~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKL----KKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHH----HHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 3556667777788888777665 455566 7888999999999999999999987664 3345778889999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCchHHHHcCCchhhhhHHHHHhc
Q 004114 592 HGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPVNASELAKEKE 634 (773)
Q Consensus 592 ~G~~e~A~~~~e~m~el~p~~~~~y~~aG~~~~~v~~lmk~~~ 634 (773)
.|+..+|.....++.. ......|...|.|..++....+.+.
T Consensus 250 ~~~~~eA~~yI~k~~~--~~rv~~y~~~~~~~~A~~~A~~~kd 290 (319)
T PF04840_consen 250 YGNKKEASKYIPKIPD--EERVEMYLKCGDYKEAAQEAFKEKD 290 (319)
T ss_pred CCCHHHHHHHHHhCCh--HHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 9998888777666322 2224678899998766655544433
No 159
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=2.2 Score=44.96 Aligned_cols=185 Identities=12% Similarity=0.193 Sum_probs=134.7
Q ss_pred HcCCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHhCCC
Q 004114 387 KEGKVKEAIEVLGLLEK---QC-ISVDLP-TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKM-YSECDS 460 (773)
Q Consensus 387 ~~G~~~eAl~lf~~M~~---~G-v~Pd~~-ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~a-y~k~G~ 460 (773)
...+.++.++++.+|+. .| ..++.. .|.-++-|....+..+.|...++.+.+.- |...-...|=.| +-..|.
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 34567888888888864 34 666765 46677778888899999999999988873 332221222222 334689
Q ss_pred hHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 461 l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
.++|+++++.+.+. |.++|--=|...-..|+--+|++-+.+..+. +.-|...|.-|-.-|...|++++|.-.+++|
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999853 6677877777777888888999888887765 6779999999999999999999999999998
Q ss_pred HHhcCCCCCcc-hhhhHHHHHHhCC---CHHHHHHHHHhC-CCCC
Q 004114 538 SKDYGIVPSMK-HYVSIVDMLGSTG---YLDEALEFIEKM-PMEP 577 (773)
Q Consensus 538 ~~~~Gi~Pd~~-tyn~LI~~y~r~G---~l~eA~~lf~~M-~~~P 577 (773)
.- +.|... -+..+.+.+-..| .++-|.+.+... .+.|
T Consensus 181 ll---~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LL---IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 64 456443 3345556555444 456677777765 4344
No 160
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.85 E-value=0.28 Score=46.11 Aligned_cols=107 Identities=15% Similarity=0.044 Sum_probs=71.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD--LPTFSQLMQACGDAKALEEAKAVHEHVERLLSP--LRVSTYNGILKMYS 456 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd--~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~--pd~~tynaLI~ay~ 456 (773)
+-.++-..|+.++|+.+|++..+.|+... ...+-.+-.++...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667778889999999999888886654 235566777778888999999988888765211 11222222334666
Q ss_pred hCCChHHHHHHHHHhhcCCHhHHHHHHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTERDLTSWDTMITGFA 487 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~ 487 (773)
..|+.++|++.+-....+++..|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888877666555555555555554
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.84 E-value=0.11 Score=57.90 Aligned_cols=87 Identities=11% Similarity=0.005 Sum_probs=38.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChH
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMD 462 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~ 462 (773)
..+...|++++|+++|.+.++.. .-+...|..+..++...|++++|+..++.+++.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 33444455555555555554432 1133344444444444455555555554444432 112333444444444444444
Q ss_pred HHHHHHHHh
Q 004114 463 DAFSVFSNM 471 (773)
Q Consensus 463 eA~~lf~~M 471 (773)
+|+..|++.
T Consensus 88 eA~~~~~~a 96 (356)
T PLN03088 88 TAKAALEKG 96 (356)
T ss_pred HHHHHHHHH
Confidence 444444443
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.77 E-value=0.5 Score=46.68 Aligned_cols=124 Identities=15% Similarity=0.094 Sum_probs=76.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD--LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd--~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~ 458 (773)
+...+...|++++|+..|++..+....+. ...+..+..++.+.|+.++|...+.+.++.. +-+...+..+..+|...
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc
Confidence 45566677888888888887765432222 3566777777778888888888888877753 22455566666777777
Q ss_pred CChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 459 DSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 459 G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
|+...|..-++... ..+++|++++++.... .|+. |..++..+...|+
T Consensus 120 g~~~~a~~~~~~A~-----------------~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 120 GEKAEEAGDQDEAE-----------------ALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGR 166 (172)
T ss_pred CChHhHhhCHHHHH-----------------HHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCc
Confidence 76555554433321 1256677777776653 3443 5555555555443
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.70 E-value=0.045 Score=47.36 Aligned_cols=9 Identities=33% Similarity=0.364 Sum_probs=2.9
Q ss_pred cCChHHHHH
Q 004114 489 NGLGEDAVD 497 (773)
Q Consensus 489 ~G~~deAl~ 497 (773)
.|++++|++
T Consensus 71 l~~y~eAi~ 79 (84)
T PF12895_consen 71 LGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHH
T ss_pred hCCHHHHHH
Confidence 333333333
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.59 E-value=1.9 Score=45.43 Aligned_cols=59 Identities=22% Similarity=0.179 Sum_probs=34.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTF--SQLMQACGDAKALEEAKAVHEHVERL 439 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty--~~LL~a~~~~g~le~A~~l~~~m~k~ 439 (773)
....+.+.|++++|++.|+++...-........ -.+..++-+.+++++|...++..++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445556677777777777777664222211111 22344556667777777777777665
No 165
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.58 E-value=2.1 Score=47.58 Aligned_cols=27 Identities=7% Similarity=0.079 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
.|.+.+...|..|+++.|++|++.-+.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 344555555555555555555554433
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.58 E-value=0.082 Score=58.99 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=67.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCC
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTG 561 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G 561 (773)
...+...|++++|+++|++.++..- -+...|..+..+|...|++++|+..++..... .| +...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhC
Confidence 3455667888888888888877432 23456677777778888888888888777543 34 4556777777778888
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHH
Q 004114 562 YLDEALEFIEKM-PMEPDVDVWEKLM 586 (773)
Q Consensus 562 ~l~eA~~lf~~M-~~~Pd~~ty~~LI 586 (773)
++++|...|++. .+.|+-.....++
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 888888888766 4455544333333
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.56 E-value=0.45 Score=46.69 Aligned_cols=115 Identities=11% Similarity=0.093 Sum_probs=77.3
Q ss_pred HHHHHHHhcCChhHHHHhhhhcc---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 004114 355 QVLNNCKHEDDFAEASRSSQNNG---TLEQLDGLVKEGKVKEAIEVLGLLEKQCISV-DLPTFSQLMQACGDAKALEEAK 430 (773)
Q Consensus 355 ~LI~~y~k~g~~~~A~~v~~~~~---~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~P-d~~ty~~LL~a~~~~g~le~A~ 430 (773)
.|.+.+.+-|.+.....+-.... .-++-.-+...|++++|..+|+.+... .| +..-|-.|-.+|-..|++++|.
T Consensus 12 ~~~~f~~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI 89 (157)
T PRK15363 12 DTMRFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAI 89 (157)
T ss_pred HHHHHHHcCCcHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHH
Confidence 34444444455555444310111 123556667889999999999888765 33 3344555555666778899999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 431 AVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 431 ~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
..|........ -|...+-.+-.+|.+.|+++.|++.|+...
T Consensus 90 ~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 90 YAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99988888763 467777778888888899999988887654
No 168
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.55 E-value=0.86 Score=56.55 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=17.3
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHH
Q 004114 380 EQLDGLVKEG--KVKEAIEVLGLLEK 403 (773)
Q Consensus 380 ~LI~a~~~~G--~~~eAl~lf~~M~~ 403 (773)
.+|.+|++.+ .+++|+....+...
T Consensus 795 ~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 795 FILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 4777888877 77777777766664
No 169
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.54 E-value=3.8 Score=49.06 Aligned_cols=171 Identities=13% Similarity=0.161 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 004114 440 LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIG 516 (773)
Q Consensus 440 G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~ 516 (773)
.+.-|..+|..|.-++..+|+++.+.+.|++... .-...|+.+-..|.-.|.-..|..+.++-....-.|+..+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3445666777777777777777777777776542 2345677777777777777777777765544332344333322
Q ss_pred HHH-HHH-cCCChHHHHHHHHHHHH--------------------------------------------------hcCCC
Q 004114 517 VFS-ACS-ALGDVVEGMLHFESMSK--------------------------------------------------DYGIV 544 (773)
Q Consensus 517 LL~-a~~-~~G~~deA~~if~~M~~--------------------------------------------------~~Gi~ 544 (773)
++. .|. +.+.+++|..+..+... .-+-.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 222 222 23444555444333322 11222
Q ss_pred CCcchhhhHHHHHHhCCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 545 PSMKHYVSIVDMLGSTGYLDEALEFIEKM---PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 545 Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M---~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
|++..|-+ --|+-.++++.|++...+. +-.-+...|..|.-.+...+++..|+.+.+...+--|++
T Consensus 478 p~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 478 PLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred chHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 33333322 2356667888888777655 224567888888888888888888888887766555553
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.54 E-value=0.37 Score=47.67 Aligned_cols=127 Identities=12% Similarity=0.129 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHH
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR--VSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMIT 484 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd--~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ 484 (773)
...+..+...+...|++++|...|++.++....+. ...+..+..+|.+.|+.++|+..+++..+ .+...+..+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34566666777788999999999988887543322 35677788888888888888888887763 25566666777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCC
Q 004114 485 GFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY 562 (773)
Q Consensus 485 ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~ 562 (773)
.|...|+...+..-+++... .+++|.+++....+ ..|+ .|..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~---~~p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIR---LAPN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHh---hCch--hHHHHHHHHHhcCc
Confidence 77777776665554443321 25667777776643 2333 36666666665554
No 171
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.52 E-value=0.19 Score=48.13 Aligned_cols=54 Identities=11% Similarity=0.348 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004114 449 NGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQF 502 (773)
Q Consensus 449 naLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM 502 (773)
..++..+...|+.++|..+...+.. | +...|-.+|.+|...|+..+|+++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444445555555555544442 2 3444555555555555555555555444
No 172
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.43 E-value=0.11 Score=49.17 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHH
Q 004114 506 GLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDML 557 (773)
Q Consensus 506 Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y 557 (773)
.+.|+..+..+++.+++..+++..|+++.+...+.|+++.+..+|..|++-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3456666666666666666666666666666666666665656665555543
No 173
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=1.5 Score=50.38 Aligned_cols=222 Identities=14% Similarity=0.119 Sum_probs=138.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHH-------HH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNG-------IL 452 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tyna-------LI 452 (773)
.+..+.-+..++..|++-+....+.. -+..-++..-.++...|...++..+-...++.|.+ ...-|+. +-
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 46777777778888888887777654 34444555666677777777666666555555433 1112222 33
Q ss_pred HHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcCCChHHHH
Q 004114 453 KMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQI-FIGVFSACSALGDVVEGM 531 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~T-y~~LL~a~~~~G~~deA~ 531 (773)
.+|.+.++.+.|+..|.+...+-.. =....+....++++.......- +.|.... .-.=-..+.+.|++..|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHH
Confidence 3666778888888888775422100 1112223344555555544433 2343321 122245567889999999
Q ss_pred HHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 532 LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 532 ~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+.|.++++. -+-|...|....-+|.+.|.+.+|++=.+.- .+.|+ +.-|--=..++....+++.|.+++....+++
T Consensus 379 ~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 379 KHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998876 2457788999999999999998888765544 33444 3333333444555667888889999999998
Q ss_pred CCCc
Q 004114 610 PSRL 613 (773)
Q Consensus 610 p~~~ 613 (773)
|++.
T Consensus 457 p~~~ 460 (539)
T KOG0548|consen 457 PSNA 460 (539)
T ss_pred chhH
Confidence 8874
No 174
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.36 E-value=2.7 Score=40.07 Aligned_cols=220 Identities=20% Similarity=0.182 Sum_probs=153.8
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhCCChHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCIS-VDLPTFSQLMQACGDAKALEEAKAVHEHVERL-LSPLRVSTYNGILKMYSECDSMDDAF 465 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~-Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-G~~pd~~tynaLI~ay~k~G~l~eA~ 465 (773)
.+....+...+..+...... .....+......+...+.+..+...+...... ........+..+...+...+....|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45556666666666554322 13567777778888888888888888877763 33445667777778888888899999
Q ss_pred HHHHHhhc--CC-HhHHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 466 SVFSNMTE--RD-LTSWDTMIT-GFAKNGLGEDAVDIFSQFKQAGLKP----DDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 466 ~lf~~M~~--~d-~~tyn~LI~-ay~~~G~~deAl~Lf~eM~~~Gv~P----d~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+++..... ++ ...+..... .+...|++++|...|.+... ..| ....+......+...++.+++...+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 99988775 22 233333444 78899999999999999855 333 3344445555567788999999998888
Q ss_pred HHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 538 SKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 538 ~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
.+. ... ....+..+-..+...+.++.|...+... ...|+ ...+..+...+...+..+.+...+....+..|.
T Consensus 194 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 194 LKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred Hhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 654 223 3677788888888999999999998877 44454 445555555555667788888888888777765
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.31 E-value=0.028 Score=48.66 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCIS-VDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFS 466 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~-Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~ 466 (773)
.|+++.|+.+|+++.+.... ++...+-.+..++.+.|+.++|..+++. .+.+.. +....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999987431 2444555688889999999999999988 333222 23444456788999999999999
Q ss_pred HHHH
Q 004114 467 VFSN 470 (773)
Q Consensus 467 lf~~ 470 (773)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9976
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.28 E-value=0.47 Score=46.61 Aligned_cols=75 Identities=11% Similarity=-0.057 Sum_probs=42.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISV--DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYS 456 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~P--d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~ 456 (773)
+...+...|++++|+..|++.......+ ...++..+-.++...|+.++|+..+...++.. +....++..+...|.
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 4455556677777777777766542222 12356666666677777777777777666542 222334444444444
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.21 E-value=0.28 Score=48.23 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD--DQIFIGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd--~~Ty~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
.|..+...+...|++++|+..|++.......|. ..++..+-.++...|+.++|+..++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555666666666655544321111 2345555555555666666666555543
No 178
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.11 E-value=3.7 Score=49.10 Aligned_cols=199 Identities=11% Similarity=0.050 Sum_probs=128.0
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH
Q 004114 342 SYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISV-DLP 411 (773)
Q Consensus 342 ~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~P-d~~ 411 (773)
....+..|..+|..|.-+..++|++..+.+.|. ...+..+-..|.-+|.-..|+.+++.-....-.| |..
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 334466789999999999999999999988542 2233346777888888889999987765443224 444
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHh--CC--CCCHHHHHHHHHHHHhCC-----------ChHHHHHHHHHhhc--
Q 004114 412 TFSQLMQACG-DAKALEEAKAVHEHVERL--LS--PLRVSTYNGILKMYSECD-----------SMDDAFSVFSNMTE-- 473 (773)
Q Consensus 412 ty~~LL~a~~-~~g~le~A~~l~~~m~k~--G~--~pd~~tynaLI~ay~k~G-----------~l~eA~~lf~~M~~-- 473 (773)
.+-.+-+.|. +.+.++++...-.++++. +. ......|-.+--+|...- ...+++..+++..+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444554 456677777776666652 11 122344555544554321 23455666666643
Q ss_pred ---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcC
Q 004114 474 ---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYG 542 (773)
Q Consensus 474 ---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~G 542 (773)
|+++-|-+| -|+..++++.|++..++..+.+-.-+...|..|.-.+.-.+++.+|+.+.+.....+|
T Consensus 475 ~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 475 PTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred CCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 344444443 3555677888888888888876666777777777777777888888887776655544
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.06 E-value=0.91 Score=53.25 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHh
Q 004114 405 CISVDLPTFSQLMQACGDA-----KALEEAKAVHEHVERL 439 (773)
Q Consensus 405 Gv~Pd~~ty~~LL~a~~~~-----g~le~A~~l~~~m~k~ 439 (773)
....+...|...+.+.... +.++.|..+|++.++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l 371 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS 371 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 3455667777777765432 2366777777777764
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.02 E-value=0.097 Score=42.70 Aligned_cols=61 Identities=23% Similarity=0.325 Sum_probs=48.3
Q ss_pred HHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 553 IVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 553 LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
+...+.+.|++++|.++|+.. ...| +...|..+-.++...|++++|..+++.+.++.|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 445678889999999999887 4456 467888888888999999999999999999888763
No 181
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.99 E-value=0.18 Score=47.80 Aligned_cols=54 Identities=19% Similarity=0.445 Sum_probs=42.9
Q ss_pred cCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCC
Q 004114 541 YGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPDVDVWEKLMNLCRMHGN 594 (773)
Q Consensus 541 ~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd~~ty~~LI~a~~~~G~ 594 (773)
..+.|+..+..+++.+|+..|++..|+++++.. ++.-+..+|..|+.=+...-+
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 356788888999999999999999999998876 666668899999885544433
No 182
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.97 E-value=0.12 Score=54.78 Aligned_cols=111 Identities=15% Similarity=0.185 Sum_probs=87.1
Q ss_pred HHHHHHHHHhh--cCCHhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC---------
Q 004114 462 DDAFSVFSNMT--ERDLTSWDTMITGFAKN-----GLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALG--------- 525 (773)
Q Consensus 462 ~eA~~lf~~M~--~~d~~tyn~LI~ay~~~-----G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G--------- 525 (773)
--.+..|.... ++|-.+|-+++..|... ++++-....++.|.+-|+.-|..+|..||..+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34566777776 77899999999888764 667888888999999999999999999998875543
Q ss_pred -------ChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCH-HHHHHHHHhC
Q 004114 526 -------DVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYL-DEALEFIEKM 573 (773)
Q Consensus 526 -------~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l-~eA~~lf~~M 573 (773)
.-.-++++++.| +.+|+.||.++-..||.++++.+.. .+..++.--|
T Consensus 131 ~F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 234467899999 4569999999999999999998863 3455555444
No 183
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.95 E-value=6.6 Score=43.80 Aligned_cols=216 Identities=16% Similarity=0.114 Sum_probs=140.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHH
Q 004114 386 VKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAF 465 (773)
Q Consensus 386 ~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~ 465 (773)
.-.|++++|.+-|+-|...- +.-..-...|.-..-+.|+-+.|++.-+..-..-.. -.-.+.++|...|..|+++.|+
T Consensus 131 l~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred HhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHH
Confidence 45799999999999997631 111112333444445778889988887776554322 2336788999999999999999
Q ss_pred HHHHHhh-----cCCHh--HHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcCCChHHHHHHH
Q 004114 466 SVFSNMT-----ERDLT--SWDTMITGFAK---NGLGEDAVDIFSQFKQAGLKPDDQI-FIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 466 ~lf~~M~-----~~d~~--tyn~LI~ay~~---~G~~deAl~Lf~eM~~~Gv~Pd~~T-y~~LL~a~~~~G~~deA~~if 534 (773)
++.+.-+ ++++. .--.|+.+-+. .-+...|...-.+- ..+.||.+- -..-..++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a--~KL~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA--NKLAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--hhcCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 9998765 34543 22334433222 22344444444333 346777653 344457888999999999999
Q ss_pred HHHHHhcCCCCCcchhhhHHHHHHhCCCHHH--HHH--HHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 535 ESMSKDYGIVPSMKHYVSIVDMLGSTGYLDE--ALE--FIEKMPMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 535 ~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~e--A~~--lf~~M~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+.+-+. .|....+ ++-.++|.|+... +.. -++.| +| +...--++..+-...|++..|..-.+.+.++.
T Consensus 287 E~aWK~---ePHP~ia--~lY~~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAWKA---EPHPDIA--LLYVRARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHhc---CCChHHH--HHHHHhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 998664 4544443 4445667776322 222 23344 45 46677777888888999999998899988888
Q ss_pred CCC
Q 004114 610 PSR 612 (773)
Q Consensus 610 p~~ 612 (773)
|..
T Consensus 360 pre 362 (531)
T COG3898 360 PRE 362 (531)
T ss_pred chh
Confidence 875
No 184
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=0.77 Score=48.42 Aligned_cols=122 Identities=11% Similarity=0.071 Sum_probs=52.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH-----HHHh
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILK-----MYSE 457 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~-----ay~k 457 (773)
..+.-.|.+.-.++++.+..+..-+-+......|++.-.+.|+.+.|...|+...+..-..+-.+.+.++. .|.-
T Consensus 185 ~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg 264 (366)
T KOG2796|consen 185 NCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG 264 (366)
T ss_pred HHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec
Confidence 33333444444445555554443333444444444444455555555555554444322222222222222 1223
Q ss_pred CCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 458 CDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
..+..+|.+.|+++... |.+.-|.-.-+..-.|+..+|++..+.|+.
T Consensus 265 ~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 265 QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555444422 333333333333334555555555555544
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.71 E-value=0.55 Score=44.13 Aligned_cols=108 Identities=18% Similarity=0.207 Sum_probs=72.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHH
Q 004114 482 MITGFAKNGLGEDAVDIFSQFKQAGLKPD--DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLG 558 (773)
Q Consensus 482 LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd--~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~ 558 (773)
+-.++-..|+.++|+.+|++-...|+... ...+..+-+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34566678999999999999988887655 34677788888899999999999988876531101 1122223345677
Q ss_pred hCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004114 559 STGYLDEALEFIEKMPMEPDVDVWEKLMNLCR 590 (773)
Q Consensus 559 r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~ 590 (773)
..|+.++|++.+-..- .++...|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL-AETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 8899999988875431 233335555555544
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.69 E-value=2.3 Score=49.83 Aligned_cols=193 Identities=13% Similarity=0.121 Sum_probs=109.2
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004114 339 QYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQ 418 (773)
Q Consensus 339 ~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~ 418 (773)
..+.+.|-.|+... +.+.|+-.|++.+|.++| -++|.-..|+++|.+|+-- .+..
T Consensus 624 ~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklF------------k~~G~enRAlEmyTDlRMF----------D~aQ 678 (1081)
T KOG1538|consen 624 EERKKRGETPNDLL---LADVFAYQGKFHEAAKLF------------KRSGHENRALEMYTDLRMF----------DYAQ 678 (1081)
T ss_pred HHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHH------------HHcCchhhHHHHHHHHHHH----------HHHH
Confidence 34556777777654 445566677777777753 3456666677776665422 1112
Q ss_pred HHHhcCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhCCChHHHHHH-------------HHHhhcCCHhHHHHH
Q 004114 419 ACGDAKALEEAKAVHEHVERL---LSPLRVSTYNGILKMYSECDSMDDAFSV-------------FSNMTERDLTSWDTM 482 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~---G~~pd~~tynaLI~ay~k~G~l~eA~~l-------------f~~M~~~d~~tyn~L 482 (773)
-+...|.-++-+.+.+.-.+. --+|. +...|+..+|+.++|..+ =.++...+..+.-.+
T Consensus 679 E~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~ 753 (1081)
T KOG1538|consen 679 EFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLC 753 (1081)
T ss_pred HHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHH
Confidence 233344444433333222111 11222 223444445555555544 233323344555555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcch-----------hh
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKH-----------YV 551 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~t-----------yn 551 (773)
..-+-+...+.-|.++|.+|-. ...++......++|++|..+-++..+ +.||+.. |.
T Consensus 754 a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 754 ATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQWLAENDRFE 821 (1081)
T ss_pred HHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc---ccccccchHHHHhhhhhhHH
Confidence 5555666777888888888753 34566677788999999888776632 4455421 22
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M 573 (773)
---.+|-++|+-.||..+++.+
T Consensus 822 EAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 822 EAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred HHHHHHHHhcchHHHHHHHHHh
Confidence 2335778888888888888887
No 187
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.56 Score=51.16 Aligned_cols=194 Identities=11% Similarity=0.097 Sum_probs=120.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH----hcCCHHHHHHHHHHHHHhCCCCCHHH-HHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQA-CG----DAKALEEAKAVHEHVERLLSPLRVST-YNGILKM 454 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a-~~----~~g~le~A~~l~~~m~k~G~~pd~~t-ynaLI~a 454 (773)
||--|.+.+++.+|..+.+++.- ..|-....-.+..+ ++ ....+.-|.+.|...-.++.+-|+.. -.++..+
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 67778899999999988776521 23333333222222 11 22235667777776666666555332 2345555
Q ss_pred HHhCCChHHHHHHHHHhhc----CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHcCCChHH
Q 004114 455 YSECDSMDDAFSVFSNMTE----RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVF-SACSALGDVVE 529 (773)
Q Consensus 455 y~k~G~l~eA~~lf~~M~~----~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL-~a~~~~G~~de 529 (773)
+.-.-++++++-.+..++. .|+.-+| +..+++..|.+.+|.++|-++....++ |..+|.++| ++|.+.+..+.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 5555677888877777763 3555554 677888899999999999766544333 567775554 56678888988
Q ss_pred HHHHHHHHHHhcCCCCCcchhh-hHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHH
Q 004114 530 GMLHFESMSKDYGIVPSMKHYV-SIVDMLGSTGYLDEALEFIEKM-PMEPDVDVW 582 (773)
Q Consensus 530 A~~if~~M~~~~Gi~Pd~~tyn-~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty 582 (773)
|+.++-.+ .-+.+..+.- .+..-|-+++.+--|-+.|+++ ...|+..-|
T Consensus 447 AW~~~lk~----~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 447 AWDMMLKT----NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred HHHHHHhc----CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 88877555 2222333322 3345667888887777777776 345665555
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.67 E-value=0.19 Score=41.19 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=26.9
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 422 DAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 422 ~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
..|++++|.++++.+.+... -+..++-.|..+|.+.|++++|..+++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555556666655555432 244455555566666666666666665554
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.66 E-value=0.12 Score=42.42 Aligned_cols=61 Identities=21% Similarity=0.283 Sum_probs=33.3
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 004114 523 ALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKL 585 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~L 585 (773)
..|++++|+.+|+.+... .+-+...+..|..+|.+.|++++|.++++.+ ...|+...|..|
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 456666666666665543 1224455556666666666666666666666 334554444333
No 190
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=94.44 E-value=1.6 Score=53.50 Aligned_cols=186 Identities=15% Similarity=0.150 Sum_probs=100.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHH--HHHHHHhCC
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNG--ILKMYSECD 459 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tyna--LI~ay~k~G 459 (773)
-.-|+..-+...|...|++..+.. .-|......+.+.+++...+++|..+.-..-+. -+.....++- +--.|.+.+
T Consensus 499 G~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yyLea~ 576 (1238)
T KOG1127|consen 499 GQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRGPYYLEAH 576 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhccccccCcc
Confidence 334444445566666666665542 224456666777777777777777772111111 1111112222 223355666
Q ss_pred ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHcCCChHHHHHHH
Q 004114 460 SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSA--CSALGDVVEGMLHF 534 (773)
Q Consensus 460 ~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a--~~~~G~~deA~~if 534 (773)
+...|+.-|..... +|...|..+..+|...|++..|+++|.+... ++|+. +|.....| -+..|.+.+|...+
T Consensus 577 n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 577 NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77777777765542 3777788888888888888888888877665 45654 23332222 24567777777777
Q ss_pred HHHHHhcC-----CCCCcchhhhHHHHHHhCCCHHHHHHHHHh
Q 004114 535 ESMSKDYG-----IVPSMKHYVSIVDMLGSTGYLDEALEFIEK 572 (773)
Q Consensus 535 ~~M~~~~G-----i~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~ 572 (773)
..+..... ..--.+++--+...+.-.|-..+|.++|++
T Consensus 654 ~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 654 GLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 66544321 111123333333334444544555555543
No 191
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.27 E-value=1.1 Score=50.49 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc-----CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE-----RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF-IGVFSA 520 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~-----~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty-~~LL~a 520 (773)
+|..+|.+..+..-++.|+.+|-+..+ +++..++++|.-++ .|+..-|..+|+-=.. .-||...| .-.+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHHH
Confidence 344444444444444444444444432 23444444444444 2334444444432111 12333333 233334
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCCC--cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVPS--MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCR 590 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~Pd--~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~ 590 (773)
+...++-..|..+|+.-..+ +..+ ...|-.||+-=..-|++..|..+=+.| .+-|-..+-....+-|.
T Consensus 476 Li~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 44455555566666543332 2222 345666666666677776666665555 22333333333344443
No 192
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.27 E-value=10 Score=41.65 Aligned_cols=192 Identities=13% Similarity=0.155 Sum_probs=125.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHhCCCCCHHHHH-HHHHH
Q 004114 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQ---ACGDAKALEEAKAVHEHVERLLSPLRVSTYN-GILKM 454 (773)
Q Consensus 379 ~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~---a~~~~g~le~A~~l~~~m~k~G~~pd~~tyn-aLI~a 454 (773)
.+|-..+.-.|.+.+|+.-|....+. |+..|-++.+ .|...|.-..|+.=+...++ ++||-..-. ---..
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchh
Confidence 35777888889999999888877654 4445555433 45566766667666666666 456642211 11234
Q ss_pred HHhCCChHHHHHHHHHhhcCCH----------------hHH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 004114 455 YSECDSMDDAFSVFSNMTERDL----------------TSW--DTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIG 516 (773)
Q Consensus 455 y~k~G~l~eA~~lf~~M~~~d~----------------~ty--n~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~ 516 (773)
+.|.|.++.|+.=|+.+...+. ..| -.++..+.-.|+...|++....+++- ..-|...|..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHH
Confidence 6788999999999988874211 112 23455566678888888888888873 2234555566
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHH
Q 004114 517 VFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVD 580 (773)
Q Consensus 517 LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ 580 (773)
-..+|...|.+..|+.-+....+ +.- +.++.--+-..+-..|+.+.++..+.+- .+.||..
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~ask---Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASK---LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHh---ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 66778888888888765544422 332 3455666777888888888888777665 5566643
No 193
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.27 E-value=4.8 Score=48.96 Aligned_cols=185 Identities=16% Similarity=0.125 Sum_probs=119.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChH--
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMD-- 462 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~-- 462 (773)
+.|.|+.++|..+++.....+.. |..|...+-..|-+.+.+++|..+|+..... -|.......+..+|++.+++.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999888887766555 8889999999999999999999999998875 456666777788888877664
Q ss_pred --HHHHHHHHhhcCCHhHHHHHHHHHHHcCCh---------HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCChHHH
Q 004114 463 --DAFSVFSNMTERDLTSWDTMITGFAKNGLG---------EDAVDIFSQFKQAG-LKPDDQIFIGVFSACSALGDVVEG 530 (773)
Q Consensus 463 --eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~---------deAl~Lf~eM~~~G-v~Pd~~Ty~~LL~a~~~~G~~deA 530 (773)
.|++++...+++--.-|+.|=-.+...... --|...++.|.+.+ -.-+..-.-.-+..+-..|.+++|
T Consensus 130 Qkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 130 QKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 466777766666556666443222222222 23555666665544 111222222223344567889999
Q ss_pred HHHHHH-HHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 531 MLHFES-MSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 531 ~~if~~-M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
.+++.. ..+. -..-+...-+--++.+...+++.+..++-.++
T Consensus 210 l~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 210 LEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 988843 3232 11222233345577888888888776665544
No 194
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.14 E-value=0.68 Score=45.47 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=55.4
Q ss_pred HHHhCCChHHHHHHHHHhh--cC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHH
Q 004114 454 MYSECDSMDDAFSVFSNMT--ER-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG 530 (773)
Q Consensus 454 ay~k~G~l~eA~~lf~~M~--~~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA 530 (773)
-+...|++++|+++|+-.. .| +..-|-.|-.++-..|++++|+..|........ -|...+-.+-.++...|+++.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 3445677777777776554 23 445566666677777777777777777666542 2445566666666677777777
Q ss_pred HHHHHHHHHhc
Q 004114 531 MLHFESMSKDY 541 (773)
Q Consensus 531 ~~if~~M~~~~ 541 (773)
++.|+..+...
T Consensus 123 ~~aF~~Ai~~~ 133 (157)
T PRK15363 123 IKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHh
Confidence 77777665543
No 195
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.14 E-value=3.4 Score=43.62 Aligned_cols=168 Identities=13% Similarity=0.084 Sum_probs=99.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCHHHH---HHHHHHHHhCCChHHHHHHHHHhhc--C--CHhHHHHHHHHHHH--
Q 004114 418 QACGDAKALEEAKAVHEHVERLLSPLRVSTY---NGILKMYSECDSMDDAFSVFSNMTE--R--DLTSWDTMITGFAK-- 488 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~G~~pd~~ty---naLI~ay~k~G~l~eA~~lf~~M~~--~--d~~tyn~LI~ay~~-- 488 (773)
..+...|++++|.+.|+.++..-... .... -.|..+|.+.++.++|...|++..+ | .-+-|-..+.|++.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 33456788999999999888863222 2222 3456777888999999998888764 2 22334444444432
Q ss_pred cC---------------C---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchh
Q 004114 489 NG---------------L---GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHY 550 (773)
Q Consensus 489 ~G---------------~---~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~ty 550 (773)
.+ + ..+|+..|+++++ -|=...-..+|...+..+.... ..+-
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~l-----a~~e 178 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDRL-----AKYE 178 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHHH-----HHHH
Confidence 11 1 1234444444443 3333333444544333332210 0112
Q ss_pred hhHHHHHHhCCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004114 551 VSIVDMLGSTGYLDEALEFIEKM----PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 551 n~LI~~y~r~G~l~eA~~lf~~M----~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~ 606 (773)
-.+...|.+.|.+..|..-|+.+ +-.| .......|+.+|...|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 24566788888888887777776 3222 34566678899999999999988777664
No 196
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.95 E-value=1.1 Score=42.86 Aligned_cols=127 Identities=18% Similarity=0.224 Sum_probs=74.2
Q ss_pred CHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHh--C-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHH
Q 004114 409 DLPTFSQLMQA---CGDAKALEEAKAVHEHVERL--L-SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTM 482 (773)
Q Consensus 409 d~~ty~~LL~a---~~~~g~le~A~~l~~~m~k~--G-~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~L 482 (773)
|...|..++.. ....++.+.+...+..++.. | +-++... ..-+.....-+..+ -..+...+
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~---~~~~~~~l 68 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL---YLDALERL 68 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH---HHHHHHHH
Confidence 44455555433 24556777777777777664 2 1122111 01111112222221 23456677
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH----HhcCCCCCcch
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMS----KDYGIVPSMKH 549 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~----~~~Gi~Pd~~t 549 (773)
+..+...|++++|+.+..++.... .-|...|..+|.++...|+..+|.++|+.+. +++|+.|+..+
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 788888999999999999988753 2356789999999999999999998888764 34688887655
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.76 E-value=0.2 Score=40.76 Aligned_cols=51 Identities=12% Similarity=0.246 Sum_probs=23.4
Q ss_pred HHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 454 MYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 454 ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
.+.+.|++++|+++|+++.+. +...|..+..++...|++++|+.+|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555544422 333444444445555555555555554443
No 198
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=93.69 E-value=8.7 Score=47.41 Aligned_cols=124 Identities=16% Similarity=0.189 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCH---hH--HHHHHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDL---TS--WDTMITGF 486 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~---~t--yn~LI~ay 486 (773)
.|+.|-.-|+..-+...|...|....+.. .-|...+.++.+.|++...++.|..+.-...+++. .. |--.--.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 44444444444444445555554443321 11334444555555555555555555322222211 11 11122233
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 487 AKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 487 ~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
...+....|+.-|+.-.+... -|...|..|..||...|++..|.++|.+.
T Consensus 573 Lea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 344445555555544443211 13334555555555555555555555443
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=2.2 Score=45.19 Aligned_cols=164 Identities=13% Similarity=0.029 Sum_probs=112.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhc----------CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTE----------RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGV 517 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~----------~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~L 517 (773)
++.|++.+.-..-+++-+..|+.=.. +-...-++|+..+.-.|.+.-.+.++++.++..-+-+.+....|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 55666666655455555555543222 23345577888888888899999999999997766777888889
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHH-----HHHhCCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHH
Q 004114 518 FSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVD-----MLGSTGYLDEALEFIEKMPME-P-DVDVWEKLMNLCR 590 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~-----~y~r~G~l~eA~~lf~~M~~~-P-d~~ty~~LI~a~~ 590 (773)
.+.-...|+++.|..+|+...+. .-+.+..+.+.++. .|.-+.++.+|...+++.... | |+..-+.=.-+..
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 89889999999999999988765 33445555555543 455677888999999888432 2 3333333333334
Q ss_pred HcCChhHHHHHHHHHHHcCCCC
Q 004114 591 MHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 591 ~~G~~e~A~~~~e~m~el~p~~ 612 (773)
-.|+...|.+..+.+.+..|..
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCcc
Confidence 4678888888888888777754
No 200
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.35 E-value=3.4 Score=46.67 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=110.2
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchh-h
Q 004114 474 RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG-LKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHY-V 551 (773)
Q Consensus 474 ~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G-v~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~ty-n 551 (773)
+-..+|.++|..-.+..-++.|..+|-+..+.| +.+++..++++|.-++. |+...|..+|+.=.+.+ ||...| +
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f---~d~~~y~~ 470 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF---PDSTLYKE 470 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC---CCchHHHH
Confidence 456789999999999888999999999999999 67899999999987765 77888999998644442 454444 3
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM--PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M--~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
-.+.-+.+.++-+.|..+|+.. .+..+ ..+|..+|.-=..-|++..+..+-++|.++-|..
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 5677788999999999999965 23334 5799999999999999999998889999888765
No 201
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.26 E-value=3.5 Score=39.07 Aligned_cols=66 Identities=14% Similarity=0.217 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004114 512 QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST-GYLDEALEFIEKMPMEPDVDVWEKLMNLCR 590 (773)
Q Consensus 512 ~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~-G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~ 590 (773)
.....++..|.+.+.++++..++..+.. |...++.+... ++++.|.+++.+-. +...|..++..+.
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 3344456666666666666666655411 12233333333 66777777776632 5556766666654
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.16 E-value=6.2 Score=40.25 Aligned_cols=59 Identities=22% Similarity=0.144 Sum_probs=33.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCIS--VDLPTFSQLMQACGDAKALEEAKAVHEHVERL 439 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~--Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~ 439 (773)
....+.+.|++.+|++.|+++...-.. --....-.+..++-+.++++.|...++.+++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556677777777777777654211 11223345556666777777777777776665
No 203
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.10 E-value=0.35 Score=51.80 Aligned_cols=89 Identities=16% Similarity=0.186 Sum_probs=63.5
Q ss_pred HcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHH
Q 004114 522 SALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A 598 (773)
.+.+++.+|+..|...++ +.| |.+-|..=..+|.+.|..+.|.+=.+.. .+.|. ..+|..|=.||...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 366777777777776654 445 3444555677788888877777666544 45554 46788888888888888888
Q ss_pred HHHHHHHHHcCCCCc
Q 004114 599 DRCAEIVEQLDPSRL 613 (773)
Q Consensus 599 ~~~~e~m~el~p~~~ 613 (773)
++++++..+++|++.
T Consensus 169 ~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 169 IEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHhhhccCCCcH
Confidence 888888888888875
No 204
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=4.8 Score=45.17 Aligned_cols=142 Identities=10% Similarity=-0.001 Sum_probs=75.2
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--cCCChHHHHHHHHHHHHhcCCCCCcchhh---hHH-----
Q 004114 485 GFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS--ALGDVVEGMLHFESMSKDYGIVPSMKHYV---SIV----- 554 (773)
Q Consensus 485 ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~--~~G~~deA~~if~~M~~~~Gi~Pd~~tyn---~LI----- 554 (773)
++.-.|+.++|...--..++.. + .-.+..++++.+ ..++.+.|..+|.+-. .+.|+...-. .+.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHH
Confidence 4555666666666655554431 1 112333333322 3455666666665442 2334321111 111
Q ss_pred -----HHHHhCCCHHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-------HH
Q 004114 555 -----DMLGSTGYLDEALEFIEKM-P-----MEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN-------EK 616 (773)
Q Consensus 555 -----~~y~r~G~l~eA~~lf~~M-~-----~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~-------~y 616 (773)
....+.|++.+|.+.+.+. . ++|++..|.....+..+.|+.++|..--+...+++|.-+. .+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 2335677777777777665 2 3445556666666667777777777777777777766643 33
Q ss_pred HHcCCchhhhhHHHHH
Q 004114 617 SKAGLVPVNASELAKE 632 (773)
Q Consensus 617 ~~aG~~~~~v~~lmk~ 632 (773)
...+.|...|++.-+.
T Consensus 332 l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555544433
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.88 E-value=0.21 Score=41.12 Aligned_cols=63 Identities=22% Similarity=0.328 Sum_probs=43.8
Q ss_pred chhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCC
Q 004114 548 KHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHG-NLELGDRCAEIVEQLDP 610 (773)
Q Consensus 548 ~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G-~~e~A~~~~e~m~el~p 610 (773)
.+|..+-..+...|++++|...|++. .+.| +...|..+-.++...| ++++|...++...+++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566666777777777777777665 3334 3566777777777777 67788888877777766
No 206
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=4.9 Score=48.19 Aligned_cols=148 Identities=9% Similarity=0.158 Sum_probs=83.3
Q ss_pred cCCCCccHHHHHHHHhhchHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHhhhh---cc---HHHHHHHHHH
Q 004114 317 QNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQ---NGMMASQVLNNCKHEDDFAEASRSSQN---NG---TLEQLDGLVK 387 (773)
Q Consensus 317 ~~~~~~~w~~a~~~f~~~~~~~~~m~~~gl~p---d~~~~n~LI~~y~k~g~~~~A~~v~~~---~~---~~~LI~a~~~ 387 (773)
....-++|....+.|+.+.++..+. .|..| -..++...|+.+.-.|+.++|-.+..- +. +...+..++.
T Consensus 358 ~~~Dhi~Wll~~k~yeeAl~~~k~~--~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 358 DQEDHIDWLLEKKKYEEALDAAKAS--IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAE 435 (846)
T ss_pred CcchhHHHHHHhhHHHHHHHHHHhc--cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcc
Confidence 3366789999999999988887754 34444 456888999999999999999884110 00 0002222223
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------------------CCCCCHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL--------------------LSPLRVST 447 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~--------------------G~~pd~~t 447 (773)
.++......+ |....-+.+..+|..+|..+.. -+ ...+++..... .-++ ...
T Consensus 436 ~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~---~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~-~~L 507 (846)
T KOG2066|consen 436 LDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SD---VKGFLELIKEWPGHLYSVLTIISATEPQIKQNSES-TAL 507 (846)
T ss_pred ccccchhhcc---CCCCCcccCchHHHHHHHHHHH-HH---HHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccc-hhH
Confidence 3322221111 1111112355677777777765 21 12222221111 1111 223
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcC
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTER 474 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~~ 474 (773)
--.|+..|...+++.+|..++-..+.+
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccCh
Confidence 344888888889999998887766544
No 207
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.59 E-value=1.3 Score=47.59 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=76.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHH
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAV 496 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl 496 (773)
..+.+++++|...|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+....- -..+|..|-.+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 457788899999998888853 336677777788899999998888887776643 3467888889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH
Q 004114 497 DIFSQFKQAGLKPDDQIFIGVFS 519 (773)
Q Consensus 497 ~Lf~eM~~~Gv~Pd~~Ty~~LL~ 519 (773)
+.|++-++ +.|+-.+|-.=|.
T Consensus 170 ~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHhhhc--cCCCcHHHHHHHH
Confidence 99988776 6788887755443
No 208
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.47 E-value=19 Score=41.13 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 579 VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 579 ~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
+.++..++..+.+.++.++|...+.++.-++|...
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~s 332 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRIS 332 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcch
Confidence 56889999999999999999999999999998873
No 209
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=2.9 Score=48.06 Aligned_cols=196 Identities=16% Similarity=0.134 Sum_probs=132.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCH---h-------HHHHH
Q 004114 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDL---T-------SWDTM 482 (773)
Q Consensus 413 y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~---~-------tyn~L 482 (773)
..-|.++.-+..+++.|.+-+...+... -++.-++..-.+|...|...+.+..-+.-.+..- . +...+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445566666677888888888877764 4555667777788888887777666655443311 1 12224
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCc--chhhhHHHHHHhC
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSM--KHYVSIVDMLGST 560 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~--~tyn~LI~~y~r~ 560 (773)
-.+|.+.++++.|+..|.+-+..-..||..+ +....+++....+... -+.|.. ..... -..+.+.
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~k-Gne~Fk~ 371 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREK-GNEAFKK 371 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHH-HHHHHhc
Confidence 4467777889999999998776655555432 2223344444433331 122332 11111 3456789
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcCCch
Q 004114 561 GYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVP 623 (773)
Q Consensus 561 G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG~~~ 623 (773)
|++.+|...+.++ ...| |...|....-+|.+.|.+..|..-.+...+++|.....|.+.|...
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAAL 436 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 9999999999988 3345 5788999999999999999999999999999999998888887654
No 210
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.22 E-value=5 Score=37.98 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=18.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGD 422 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~ 422 (773)
+|..+.+.+....++.+++.+...+. .+...++.+|..+++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 44444444445555555544444431 333344444444443
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.10 E-value=11 Score=38.34 Aligned_cols=168 Identities=12% Similarity=0.118 Sum_probs=94.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--CC--HhHHHHHHHHHHHcCC
Q 004114 418 QACGDAKALEEAKAVHEHVERLLS--PLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--RD--LTSWDTMITGFAKNGL 491 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~G~--~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~d--~~tyn~LI~ay~~~G~ 491 (773)
..+...|++++|...|+.++..-. +--....-.++.+|-+.|+.++|...|++..+ |+ .+.+-..+.|.+....
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 345678899999999999988722 22234556678889999999999999998763 22 2233333333322111
Q ss_pred hHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHH
Q 004114 492 GEDAVDIFSQFKQAGLKPD-------DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564 (773)
Q Consensus 492 ~deAl~Lf~eM~~~Gv~Pd-------~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~ 564 (773)
....+ ....| ..+|..+|.-+=......+|...+..+.... ..+--.+.+.|.+.|.+.
T Consensus 93 ~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l-----a~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 93 IPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL-----AEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTT-HH
T ss_pred Cccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcccHH
Confidence 11110 00111 1245555555556666666665554443320 112224667788899988
Q ss_pred HHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChhHHH
Q 004114 565 EALEFIEKM----PMEPD-VDVWEKLMNLCRMHGNLELGD 599 (773)
Q Consensus 565 eA~~lf~~M----~~~Pd-~~ty~~LI~a~~~~G~~e~A~ 599 (773)
.|..-++.+ +-.+. ....-.|+.++.+.|..+.|.
T Consensus 159 aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 888877776 22221 345667788888888776443
No 212
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=92.07 E-value=15 Score=37.26 Aligned_cols=126 Identities=14% Similarity=0.132 Sum_probs=89.7
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhH
Q 004114 474 RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSI 553 (773)
Q Consensus 474 ~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~L 553 (773)
|++..--.|..++...|+..||...|.+-..--+.-|......+..+....++...|...++.+.+...---+..+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 56666677888999999999999999988765556677888888899999999999998888875542111124455567
Q ss_pred HHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHH
Q 004114 554 VDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGD 599 (773)
Q Consensus 554 I~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~ 599 (773)
...|...|+.+.|+.-|+.. ..-|+...-...-..+.+.|+.++|.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHH
Confidence 78888899999888888866 44455433223333445677666663
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.93 E-value=12 Score=44.58 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=37.3
Q ss_pred chhhhHHHHHHhCCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 548 KHYVSIVDMLGSTGYLDEALEFIEKM----PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 548 ~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
.+|-.|..--...|+++.|+..--.+ .+-|-+.+|..|.-+-|....+....+++-+++..
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 34445555566778888887765444 35567778877766656555555555555554443
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.89 E-value=0.53 Score=39.77 Aligned_cols=24 Identities=25% Similarity=0.628 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSN 470 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~ 470 (773)
+++.|-.+|.+.|++++|+..|++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444444444443
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.88 E-value=10 Score=45.51 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=47.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCC
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY 562 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~ 562 (773)
|.-+...|...+|.++-.+.+ -||-.-|-.=+.+++..+++++-+++-.+++. +.-|.-.+.+|.+.|+
T Consensus 691 v~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEACLKQGN 759 (829)
T ss_pred HHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHHHhccc
Confidence 344444555555555544433 24555555555555555555554444333311 2334445555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 004114 563 LDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 563 l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A 598 (773)
.+||.+.+-+.+-.+ -...+|.+.|++.+|
T Consensus 760 ~~EA~KYiprv~~l~------ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 760 KDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEA 789 (829)
T ss_pred HHHHhhhhhccCChH------HHHHHHHHhccHHHH
Confidence 555555555542111 234445555554444
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=91.85 E-value=0.47 Score=39.41 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=44.6
Q ss_pred HHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch
Q 004114 555 DMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 555 ~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~ 614 (773)
.+|.+.+++++|.++++.+ .+.| +...|...-..+...|+++.|...++.+.+..|++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4677788888888888877 3444 4566666777778888888888888888888887643
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.54 E-value=1.6 Score=46.71 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=12.0
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 588 LCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 588 a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.+...|+.+.|..+++.+.+..|+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3344455555555555554444443
No 218
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.46 E-value=13 Score=40.47 Aligned_cols=125 Identities=16% Similarity=0.254 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh--CC----ChHHHHHHHHHhhcC-------CHhHHHHHHHHHHHcCC-
Q 004114 426 LEEAKAVHEHVERLLSPLRVSTYNGILKMYSE--CD----SMDDAFSVFSNMTER-------DLTSWDTMITGFAKNGL- 491 (773)
Q Consensus 426 le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k--~G----~l~eA~~lf~~M~~~-------d~~tyn~LI~ay~~~G~- 491 (773)
++..+.+++.|++.|+.-+..+|-+..-.... .. .+..|..+|+.|++. +-.++.+|+.. ....
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566666677777666665555443222222 11 245667777777642 44555555544 2222
Q ss_pred ---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCC---hHHHHHHHHHHHHhcCCCCCcchhhhH
Q 004114 492 ---GEDAVDIFSQFKQAGLKPDD-QIFIGVFSACSALGD---VVEGMLHFESMSKDYGIVPSMKHYVSI 553 (773)
Q Consensus 492 ---~deAl~Lf~eM~~~Gv~Pd~-~Ty~~LL~a~~~~G~---~deA~~if~~M~~~~Gi~Pd~~tyn~L 553 (773)
.+++...|+.+...|+...- .-+.+-|-+++..-. +..+..+++.+.+. |+++...+|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHH
Confidence 35667777777777775543 233333333333222 33566777777665 887777776543
No 219
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=91.41 E-value=18 Score=36.76 Aligned_cols=120 Identities=15% Similarity=0.121 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhc----CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHH
Q 004114 443 LRVSTYNGILKMYSECDSMDDAFSVFSNMTE----RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG---LKPDDQIFI 515 (773)
Q Consensus 443 pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~----~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G---v~Pd~~Ty~ 515 (773)
|++.---.|..++.+.|+..+|...|.+... .|....-.+..+....+++.+|..+++++.+.. -.||. ..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hH
Confidence 4444344444445555555555555544432 244444444444444555555555555554432 22332 23
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHH
Q 004114 516 GVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEAL 567 (773)
Q Consensus 516 ~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~ 567 (773)
.+-.++.-.|...+|+..|+.... ..|+...-.-.-.++++.|+.++|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHH
Confidence 334445555555555555554432 2344433333444555555555544
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.38 E-value=12 Score=43.40 Aligned_cols=125 Identities=14% Similarity=0.076 Sum_probs=83.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC-----HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCHHHH
Q 004114 379 LEQLDGLVKEGKVKEAIEVLGLLEKQC-ISVD-----LPTFSQLMQACGD----AKALEEAKAVHEHVERLLSPLRVSTY 448 (773)
Q Consensus 379 ~~LI~a~~~~G~~~eAl~lf~~M~~~G-v~Pd-----~~ty~~LL~a~~~----~g~le~A~~l~~~m~k~G~~pd~~ty 448 (773)
..++....=.|+-+.+++++.+-.+.+ +.-. ..+|..++..++. ...++.|.+++..+.++ -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 347777777889999998888765532 3221 1234444444443 45688899999998886 4566555
Q ss_pred HHH-HHHHHhCCChHHHHHHHHHhhcC-------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 449 NGI-LKMYSECDSMDDAFSVFSNMTER-------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 449 naL-I~ay~k~G~l~eA~~lf~~M~~~-------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
.-. -+.+...|++++|++.|++.... ....+--+.-++.-..++++|.+.|.++.+.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 443 36677789999999999875531 2233334555577778888888888888874
No 221
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.05 E-value=2.9 Score=44.67 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=74.3
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-cchh
Q 004114 476 LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD----QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS-MKHY 550 (773)
Q Consensus 476 ~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~----~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-~~ty 550 (773)
...|...+..+.+.|++++|+..|+.+.+.- |+. ..+-.+-.++...|++++|...|..+.+.+.-.|. ...+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 3457776666677899999999999999853 554 46778888999999999999999999876433222 3344
Q ss_pred hhHHHHHHhCCCHHHHHHHHHhC
Q 004114 551 VSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 551 n~LI~~y~r~G~l~eA~~lf~~M 573 (773)
-.+...+...|+.++|.++|+.+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566777899999999999876
No 222
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=90.96 E-value=0.93 Score=37.17 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
+|..+-..+...|++++|+..|.+..+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 223
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.82 E-value=6.5 Score=42.86 Aligned_cols=135 Identities=9% Similarity=0.151 Sum_probs=88.8
Q ss_pred HHHHHHHcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHhCC---CCCHH
Q 004114 381 QLDGLVKEGK-----VKEAIEVLGLLEKQCISVDLPTFSQLMQACGD--AK----ALEEAKAVHEHVERLLS---PLRVS 446 (773)
Q Consensus 381 LI~a~~~~G~-----~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~--~g----~le~A~~l~~~m~k~G~---~pd~~ 446 (773)
+...++-.+. +++.+++++.|.+.|++-+..+|-+.+-.... .. ....|+++|+.|++... .++..
T Consensus 63 la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~ 142 (297)
T PF13170_consen 63 LAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDY 142 (297)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccch
Confidence 4445555555 56677889999999999998888765444433 22 36789999999999742 34556
Q ss_pred HHHHHHHHHHhCCC----hHHHHHHHHHhhc-----CCHhHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCCHHHH
Q 004114 447 TYNGILKMYSECDS----MDDAFSVFSNMTE-----RDLTSWDTMITGFAKNGL---GEDAVDIFSQFKQAGLKPDDQIF 514 (773)
Q Consensus 447 tynaLI~ay~k~G~----l~eA~~lf~~M~~-----~d~~tyn~LI~ay~~~G~---~deAl~Lf~eM~~~Gv~Pd~~Ty 514 (773)
++.+||.+ ...+ ++.++.+|+.+.+ -+..-+.+-|-+++.... ...+.++++.+.+.|+++-...|
T Consensus 143 ~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~y 220 (297)
T PF13170_consen 143 PFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHY 220 (297)
T ss_pred hHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccc
Confidence 77777655 3333 3556666666654 244444444444443322 45789999999999999887766
Q ss_pred HHH
Q 004114 515 IGV 517 (773)
Q Consensus 515 ~~L 517 (773)
..+
T Consensus 221 p~l 223 (297)
T PF13170_consen 221 PTL 223 (297)
T ss_pred cHH
Confidence 544
No 224
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.62 E-value=4.4 Score=47.95 Aligned_cols=181 Identities=14% Similarity=0.088 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC--------CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHh
Q 004114 407 SVDLPTFSQLMQACGDAKALEEAKAVHEHVERL-LSPL--------RVSTYNGILKMYSECDSMDDAFSVFSNMTERDLT 477 (773)
Q Consensus 407 ~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-G~~p--------d~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~ 477 (773)
.|.+..|..|..+....-.++.|...|-..... |++. +...-.+=|.+| -|++++|++++-+|..+|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 577778887777776767788887777554432 3321 111112223333 37899999999998887753
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH----------------HHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH------H
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQ----------------FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHF------E 535 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~e----------------M~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if------~ 535 (773)
|..+.+.|++-....|++. |-+. -.+...|-.....|...|+.+.-.+.+ +
T Consensus 767 -----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~ 839 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCGDTENQIECLYRLELFG 839 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhh
Confidence 3444445555444444321 1100 001112333333444444433222211 1
Q ss_pred HHHH-hcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 004114 536 SMSK-DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCA 602 (773)
Q Consensus 536 ~M~~-~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~ 602 (773)
.+.. ...++-+....-.|.+++.+.|.-++|.+.+-+-+ .|. +.+.+|....++.+|.+++
T Consensus 840 ~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~pk-----aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 840 ELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LPK-----AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc-CcH-----HHHHHHHHHHHHHHHHHHH
Confidence 1110 00244456666778888999999888888887664 232 3345555555555554443
No 225
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.51 E-value=5.1 Score=46.15 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCCh
Q 004114 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLG 492 (773)
Q Consensus 413 y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~ 492 (773)
...+++-+-+.|..+.|+++-..- ..-.+...++|+++.|.++-++.. +...|..|-....+.|++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 445555555555555555543221 112333445555555555544433 444566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHh
Q 004114 493 EDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEK 572 (773)
Q Consensus 493 deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~ 572 (773)
+.|.+.|.+... |..|+--|.-.|+.+.-.++.+..... | -++....++.-.|++++..+++.+
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666555554321 344444444455554444433332222 1 133333444444555555555554
Q ss_pred CC
Q 004114 573 MP 574 (773)
Q Consensus 573 M~ 574 (773)
-+
T Consensus 428 ~~ 429 (443)
T PF04053_consen 428 TG 429 (443)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 226
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.38 E-value=20 Score=38.05 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=45.5
Q ss_pred HHHHHHhCCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 553 IVDMLGSTGYLDEALEFIEKM----PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 553 LI~~y~r~G~l~eA~~lf~~M----~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
+..-|.+.|.+..|..-+++| +-.+ -....-.|..+|...|-.++|.++.+.+..-.|+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 445678888888888888777 1111 234566678899999999999999999888777663
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.14 E-value=28 Score=39.14 Aligned_cols=181 Identities=14% Similarity=0.048 Sum_probs=92.1
Q ss_pred hhccHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCCHHH
Q 004114 374 QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQC---ISVDLPTFSQLMQACGD---AKALEEAKAVHEHVERLLSPLRVST 447 (773)
Q Consensus 374 ~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~G---v~Pd~~ty~~LL~a~~~---~g~le~A~~l~~~m~k~G~~pd~~t 447 (773)
+......|+-.|....+++..+++.+.|...- +.-....--...-|+-+ .|+.++|++++..++...-.++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 33444456667777777777777777776541 11011111122223344 6777778877777555544556655
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHcC
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQI---FIGVFSACSAL 524 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~T---y~~LL~a~~~~ 524 (773)
|..+-..|-. +|.+....|..+ .++|++.|.+--+ +.||..+ +.+|+....+.
T Consensus 220 ~gL~GRIyKD---------~~~~s~~~d~~~-------------ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 220 LGLLGRIYKD---------LFLESNFTDRES-------------LDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHD 275 (374)
T ss_pred HHHHHHHHHH---------HHHHcCccchHH-------------HHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCc
Confidence 5555444432 122111112222 5566666655433 2344432 23333333221
Q ss_pred C-ChHHHHHHH---HHHHHhcCC---CCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC
Q 004114 525 G-DVVEGMLHF---ESMSKDYGI---VPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD 578 (773)
Q Consensus 525 G-~~deA~~if---~~M~~~~Gi---~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd 578 (773)
- .-.+..++- ..+..+.|. ..+-..+..++++..-.|+.++|.+..+.| ...|.
T Consensus 276 ~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 276 FETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 1 111222222 111111122 234566778899999999999999999998 43443
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=89.75 E-value=0.74 Score=38.83 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQA--GLK---PD-DQIFIGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~--Gv~---Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
.+|+.|-..|...|++++|+..|++..+. -.. |+ ..++..+-.++...|++++|+.++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888887643 111 22 3466777777778888888887776653
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=89.56 E-value=6.7 Score=44.82 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhh--cCCH----hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 443 LRVSTYNGILKMYSECDSMDDAFSVFSNMT--ERDL----TSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 443 pd~~tynaLI~ay~k~G~l~eA~~lf~~M~--~~d~----~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
.+...++.+-.+|.+.|++++|+..|++.. .|+. .+|..+..+|+..|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346778888888888888888888888765 3432 35888888888888888888888888774
No 230
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.48 E-value=20 Score=43.58 Aligned_cols=177 Identities=15% Similarity=0.138 Sum_probs=114.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004114 376 NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACG----DAKALEEAKAVHEHVERLLSPLRVSTYNGI 451 (773)
Q Consensus 376 ~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~----~~g~le~A~~l~~~m~k~G~~pd~~tynaL 451 (773)
..+..-|..+++...++-|+.+-+. . ..|..+...++..|+ +.|++++|..-|-+.+.. ++| ..+
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~---~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKS---Q--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHh---c--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 3344578888888888888877433 2 345666666666665 568899998877665543 222 235
Q ss_pred HHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH
Q 004114 452 LKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVV 528 (773)
Q Consensus 452 I~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~d 528 (773)
|.-|.+..++..-..+++.+.+. +...-+.||.+|.+.++.++-.++.+.-. .|..- .-+-..+..|.+.+-++
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYLD 480 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChHH
Confidence 56666666666666777776654 44556788999999999988877776544 33211 12345567777888888
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCC
Q 004114 529 EGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPM 575 (773)
Q Consensus 529 eA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~ 575 (773)
+|..+-... +. .. ..|--.+-..+++++|++.+..||+
T Consensus 481 ~a~~LA~k~----~~--he---~vl~ille~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 481 EAELLATKF----KK--HE---WVLDILLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHHHh----cc--CH---HHHHHHHHHhcCHHHHHHHHhcCCH
Confidence 887765433 22 11 2233344567889999999998863
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.44 E-value=27 Score=40.40 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=26.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL 439 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~ 439 (773)
+|.---+..+...-+++=.+.++. .||..+.-+|| |--....+.+|++++++.++.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKA 229 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH
Confidence 455555555555555555554442 34433222221 111233456666666665554
No 232
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.07 E-value=36 Score=36.54 Aligned_cols=101 Identities=11% Similarity=0.093 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHH
Q 004114 411 PTFSQLMQACGDAKA---LEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMIT 484 (773)
Q Consensus 411 ~ty~~LL~a~~~~g~---le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ 484 (773)
.++..|+.++...+. .++|..+.+.+.+.... ...++-.-|+.+.+.++.+++.+++.+|... ....+..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 356667777766665 45566677777554222 3445555677777789999999999998843 3456666666
Q ss_pred HHHH--cCChHHHHHHHHHHHHCCCCCCHH
Q 004114 485 GFAK--NGLGEDAVDIFSQFKQAGLKPDDQ 512 (773)
Q Consensus 485 ay~~--~G~~deAl~Lf~eM~~~Gv~Pd~~ 512 (773)
.+-. ......|...++.+....+.|...
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 6622 233467777777777766666653
No 233
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=89.00 E-value=1.7 Score=35.91 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=24.7
Q ss_pred HHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 454 MYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 454 ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
+|.+.+++++|+++++.+.. | +...|...-.+|.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444555555555554442 1 334444444555555555555555555544
No 234
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.98 E-value=5.8 Score=47.98 Aligned_cols=140 Identities=11% Similarity=0.074 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCChhHHHHhhh-----hccHHHHHHH----HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004114 354 SQVLNNCKHEDDFAEASRSSQ-----NNGTLEQLDG----LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAK 424 (773)
Q Consensus 354 n~LI~~y~k~g~~~~A~~v~~-----~~~~~~LI~a----~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g 424 (773)
..-|++..+....+.|..+.. .....++... +.+.|++++|..-|-+-... +.|. .+|.-+..+.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 344555555556666655421 1122223333 33567777776666554332 2222 2344444444
Q ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHh--HHHHHHHHHHHcCChHHHHHHHHH
Q 004114 425 ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLT--SWDTMITGFAKNGLGEDAVDIFSQ 501 (773)
Q Consensus 425 ~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~--tyn~LI~ay~~~G~~deAl~Lf~e 501 (773)
.+..-...++.+.+.|+. +...-+.||.+|.|.++.+.-.++.+... .... -....+..+.+.+-.++|..|-.+
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 555555556666666655 33344566777777776666666555544 1111 133444555555555555554443
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.80 E-value=21 Score=33.67 Aligned_cols=187 Identities=20% Similarity=0.157 Sum_probs=135.0
Q ss_pred cCCHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-----CCHhHHHHHHHHHHHcCChHHHH
Q 004114 423 AKALEEAKAVHEHVERLLSP-LRVSTYNGILKMYSECDSMDDAFSVFSNMTE-----RDLTSWDTMITGFAKNGLGEDAV 496 (773)
Q Consensus 423 ~g~le~A~~l~~~m~k~G~~-pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~-----~d~~tyn~LI~ay~~~G~~deAl 496 (773)
.+....+...+..+...... .....+..+...+...+.+..+...+..... .....+..+...+...+...+|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45566666666666554322 1356788888999999999999999887652 35567777888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHcCCChHHHHHHHHHHHHhcCC--CCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 497 DIFSQFKQAGLKPDDQIFIGVFS-ACSALGDVVEGMLHFESMSKDYGI--VPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 497 ~Lf~eM~~~Gv~Pd~~Ty~~LL~-a~~~~G~~deA~~if~~M~~~~Gi--~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+++.........+.. ....... ++...|+++.|...+...... .- ......+......+...++.++|...+..+
T Consensus 116 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPDL-AEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 999998876544422 2222222 788999999999999987432 21 122334444445567789999999999887
Q ss_pred -CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 574 -PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 574 -~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
...++ ...+..+-..+...++++.|...+....+..|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 33344 677888888888889899999999888888776
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=88.60 E-value=2.3 Score=45.46 Aligned_cols=85 Identities=13% Similarity=0.086 Sum_probs=66.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAK----------------ALEEAKAVHEHVERLLSPLRVSTYNGI 451 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g----------------~le~A~~l~~~m~k~G~~pd~~tynaL 451 (773)
.++++=....++.|.+.|+.-|..+|..||..+-+.. .-+-+..++++|...|+.||-.+-..|
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 4556666667899999999999999999999876643 235688899999999999999999999
Q ss_pred HHHHHhCCC-hHHHHHHHHHhh
Q 004114 452 LKMYSECDS-MDDAFSVFSNMT 472 (773)
Q Consensus 452 I~ay~k~G~-l~eA~~lf~~M~ 472 (773)
|.++++.+- +.+..++.--|+
T Consensus 165 vn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 165 VNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHhccccccHHHHHHHHHhhh
Confidence 999988774 345555555554
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=87.91 E-value=5.2 Score=45.64 Aligned_cols=63 Identities=11% Similarity=-0.041 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRV----STYNGILKMYSECDSMDDAFSVFSNMTE 473 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~----~tynaLI~ay~k~G~l~eA~~lf~~M~~ 473 (773)
+...+..+-.+|...|++++|...|+..++. .|+. .+|..+..+|++.|++++|+..|++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445666666666666666666666666554 2332 2466666666666666666666665554
No 238
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.72 E-value=31 Score=34.35 Aligned_cols=121 Identities=18% Similarity=0.156 Sum_probs=75.1
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHH
Q 004114 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIV 554 (773)
Q Consensus 475 d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI 554 (773)
....|..+|..+.+.|++. .+..+...++-||.......+-.+.. ....+.++--.|.++.+ ..+..++
T Consensus 28 ~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~~~ii 96 (167)
T PF07035_consen 28 QHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAYEEII 96 (167)
T ss_pred CHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhHHHHH
Confidence 4445555566666666533 35556667788888777766654443 23344444444544422 1466788
Q ss_pred HHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 555 DMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 555 ~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
+.+...|++-+|.++....+. -+......++.|-...++...--.+++.+.+
T Consensus 97 evLL~~g~vl~ALr~ar~~~~-~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 97 EVLLSKGQVLEALRYARQYHK-VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHhCCCHHHHHHHHHHcCC-cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999999988631 2223335678887777776655566666654
No 239
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.67 E-value=3.8 Score=44.09 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 004114 446 STYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQ-----AGLKPDDQIFIGV 517 (773)
Q Consensus 446 ~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~-----~Gv~Pd~~Ty~~L 517 (773)
.++..++..+..+|+.+.+.+.++++... +...|..||.+|.+.|+...|+..|+.|.. .|+.|-..+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 46677788888888888888888877643 667888888888888888888888887765 4777777666555
Q ss_pred HHH
Q 004114 518 FSA 520 (773)
Q Consensus 518 L~a 520 (773)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.60 E-value=17 Score=41.92 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=43.9
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHH
Q 004114 421 GDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~ 500 (773)
.+.|+++.|.++..++ .+...|..|-+...+.|+++-|++.|.+.. -|..|+--|.-.|+.++-.++.+
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHH
Confidence 3445555554443221 244455555555555555555555555543 24444444555555554444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 004114 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFE 535 (773)
Q Consensus 501 eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~ 535 (773)
.-...|- ++..+.++.-.|++++..+++.
T Consensus 398 ~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 398 IAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 4443331 3333333334455555554443
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=87.27 E-value=25 Score=40.81 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=101.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-H
Q 004114 344 SGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVK----EGKVKEAIEVLGLLEKQCISVDLPTFSQLM-Q 418 (773)
Q Consensus 344 ~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~----~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL-~ 418 (773)
.|+.-|-...-.++....+.+.+..+...+.-..+..++..++. ....+.|.+++..+.+. -|+...|...- +
T Consensus 198 vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR 275 (468)
T PF10300_consen 198 VGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGR 275 (468)
T ss_pred cCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 45666666666666666666666665553333333334444443 56788999999999886 67776664433 3
Q ss_pred HHHhcCCHHHHHHHHHHHHHhC--C-CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHH-HHHHcCC
Q 004114 419 ACGDAKALEEAKAVHEHVERLL--S-PLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMIT-GFAKNGL 491 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~G--~-~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~-ay~~~G~ 491 (773)
.+...|++++|.+.++...... . +.....+--+.-.+.-..++++|...|..+.+. .-..|.-+.. +|...|+
T Consensus 276 ~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 276 LERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR 355 (468)
T ss_pred HHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 4557799999999999766421 1 122334445666678889999999999999853 2233333332 3344676
Q ss_pred h-------HHHHHHHHHHH
Q 004114 492 G-------EDAVDIFSQFK 503 (773)
Q Consensus 492 ~-------deAl~Lf~eM~ 503 (773)
. ++|.++|.+..
T Consensus 356 ~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 356 EEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred chhhhhhHHHHHHHHHHHH
Confidence 6 77788877654
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.75 E-value=1.7 Score=32.83 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHH
Q 004114 580 DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSK 618 (773)
Q Consensus 580 ~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~ 618 (773)
.+|..|-.+|...|++++|+++++.+.+..|+++.+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 357778888999999999999999999999988655443
No 243
>PRK09687 putative lyase; Provisional
Probab=86.73 E-value=50 Score=35.62 Aligned_cols=141 Identities=11% Similarity=0.041 Sum_probs=60.7
Q ss_pred HHHHHHHcCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004114 381 QLDGLVKEGKV----KEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEE--AKAVHEHVERLLSPLRVSTYNGILKM 454 (773)
Q Consensus 381 LI~a~~~~G~~----~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~--A~~l~~~m~k~G~~pd~~tynaLI~a 454 (773)
.+.++++-|+. .+++.++..+... .+|..+-...+.+++..+.-.. ..++...+...-..++..+--..+.+
T Consensus 74 A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~a 151 (280)
T PRK09687 74 GADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFA 151 (280)
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 45555555542 3455555555332 3455555555555554432110 01112222221122344444555555
Q ss_pred HHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 455 YSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNG-LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 455 y~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G-~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
+++.++.+....+..-+..+|...-...+.++.+.+ ....+...+..+.. .++...-...+.++++.++
T Consensus 152 Lg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 152 LSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence 555555332222233333444444444444444432 12344444444442 2344444555555555555
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.67 E-value=58 Score=35.36 Aligned_cols=121 Identities=10% Similarity=0.146 Sum_probs=76.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC----CHhHHHHHHHHHHHcCChH
Q 004114 418 QACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER----DLTSWDTMITGFAKNGLGE 493 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~----d~~tyn~LI~ay~~~G~~d 493 (773)
......+++.+|..+|......--. +...--.|..+|...|+.+.|..+++.++.. ....-.+-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456788899999999888876433 3445667889999999999999999998743 1122222344445555555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHH-HHHhcC
Q 004114 494 DAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFES-MSKDYG 542 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~-M~~~~G 542 (773)
+...+-.+.-. .| |...=..|-..+...|+.++|.+.+-. |+++.|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 44444444433 35 444445566677777888888755544 444333
No 245
>PRK15331 chaperone protein SicA; Provisional
Probab=85.20 E-value=16 Score=36.27 Aligned_cols=116 Identities=11% Similarity=0.023 Sum_probs=69.2
Q ss_pred HHHHHHHhcCChhHHHHhhhhccH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004114 355 QVLNNCKHEDDFAEASRSSQNNGT---LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKA 431 (773)
Q Consensus 355 ~LI~~y~k~g~~~~A~~v~~~~~~---~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~ 431 (773)
.+..+...-+-+.+...+ +...+ -..-..+-..|++++|..+|.-+...+.- +..-+..|-.+|-..+.+++|..
T Consensus 15 ~i~~al~~G~tlk~l~gi-s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~ 92 (165)
T PRK15331 15 MIWDAVSEGATLKDVHGI-PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACD 92 (165)
T ss_pred HHHHHHHCCCCHHHHhCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455544455544443 11111 12445556788888888888887765322 33334444444446678888888
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 004114 432 VHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE 473 (773)
Q Consensus 432 l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~ 473 (773)
+|........ -|...+--+-.+|...|+.+.|+..|....+
T Consensus 93 ~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 93 LYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 8877666543 2333334456677788888888888877654
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.16 E-value=53 Score=36.29 Aligned_cols=151 Identities=13% Similarity=-0.012 Sum_probs=104.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhCCCh
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL---LSPLRVSTYNGILKMYSECDSM 461 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~---G~~pd~~tynaLI~ay~k~G~l 461 (773)
+--.|+..+|-..+++++.. .+.|...+.-.=++|.-.|+.+..+..++.++.. +++..+.+-..+.-++..||-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34567888888889998876 5668888888888999999999999888888765 2222233334444455689999
Q ss_pred HHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 004114 462 DDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA---GLKPDDQIFIGVFSACSALGDVVEGMLHFE 535 (773)
Q Consensus 462 ~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~---Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~ 535 (773)
++|++.-++..+- |.-+-.++...+-..|++.++.++..+-... +-..-..-|-...-.+...+.++.|+.+|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887643 5556667777888899999999887653321 100011123233334456688999999997
Q ss_pred H
Q 004114 536 S 536 (773)
Q Consensus 536 ~ 536 (773)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 6
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=84.92 E-value=49 Score=38.37 Aligned_cols=123 Identities=14% Similarity=0.208 Sum_probs=72.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 004114 387 KEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFS 466 (773)
Q Consensus 387 ~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~ 466 (773)
.+.-+.+|.++|++..+.|- ..+ .+.......-..++.+.++...+-..+---|-.++-|.|+.++|++
T Consensus 212 eA~Ti~Eae~l~rqAvkAgE----~~l-------g~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk 280 (539)
T PF04184_consen 212 EASTIVEAEELLRQAVKAGE----ASL-------GKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIK 280 (539)
T ss_pred cccCHHHHHHHHHHHHHHHH----Hhh-------chhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHH
Confidence 45567889999888776541 111 1111111111122222222222333333446666678899999999
Q ss_pred HHHHhhc--C---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 004114 467 VFSNMTE--R---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD--QIFIGVFSAC 521 (773)
Q Consensus 467 lf~~M~~--~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~--~Ty~~LL~a~ 521 (773)
.|.+|.+ | .......||.+|...+.+.++..++.+-.+... |.. ..|+..|-..
T Consensus 281 ~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALLka 341 (539)
T PF04184_consen 281 MFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHHHH
Confidence 9999863 3 234677899999999999999999988654322 333 3566655433
No 248
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.68 E-value=20 Score=38.65 Aligned_cols=110 Identities=11% Similarity=0.198 Sum_probs=79.2
Q ss_pred CChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHc-CCC-hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHH
Q 004114 490 GLGEDAVDIFSQFKQ-AGLKPDDQIFIGVFSACSA-LGD-VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEA 566 (773)
Q Consensus 490 G~~deAl~Lf~eM~~-~Gv~Pd~~Ty~~LL~a~~~-~G~-~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA 566 (773)
..+-+|+.+|+...- ..+--|..+...||..... .+. +..-.++.+-+...++-.++..+..++|+.+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345678888873322 2345567777777777765 222 2223355555666667788889999999999999999999
Q ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCChhHHH
Q 004114 567 LEFIEKM----PMEPDVDVWEKLMNLCRMHGNLELGD 599 (773)
Q Consensus 567 ~~lf~~M----~~~Pd~~ty~~LI~a~~~~G~~e~A~ 599 (773)
.++++.. ...-|...|..+|+.....|+.+...
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 9999877 12447889999999999999965443
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.47 E-value=44 Score=36.25 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=79.1
Q ss_pred HHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHH
Q 004114 453 KMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVE 529 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~de 529 (773)
......|+..+|..+|+.... .+...--.|+.+|...|+.+.|..++..+-..--.........=|..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345668999999999988763 24556677889999999999999999987654222223332233444444444444
Q ss_pred HHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 530 GMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 530 A~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
...+-....++ | |...--.|.+.|...|+.++|.+.+-.+
T Consensus 222 ~~~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 222 IQDLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444333 5 5666667888899999999998876554
No 250
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.16 E-value=39 Score=33.69 Aligned_cols=133 Identities=14% Similarity=0.095 Sum_probs=85.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC
Q 004114 395 IEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER 474 (773)
Q Consensus 395 l~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~ 474 (773)
++.++.+.+.++.|+...|..++..+.+.+.+... .+++..++-+|.......+-.+.. ....|..+=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 45566677889999999999999999999986554 444555666665554444433332 234455555555554
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 475 d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
=-..+..++..+...|++-+|+.+.+..... +...-..++.|....++...-..+|.-.
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456778888999999999999998775321 2223345677777776655444444333
No 251
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.82 E-value=12 Score=40.44 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHH-HHH
Q 004114 443 LRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNG---LGEDAVDIFSQFKQAGLKPDDQ-IFI 515 (773)
Q Consensus 443 pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G---~~deAl~Lf~eM~~~Gv~Pd~~-Ty~ 515 (773)
-|...|-.|-..|...|+.++|...|....+ ++...+..+..++.... +..+|..+|+++... .|+.+ +..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHH
Confidence 3555566666666666666666666654432 24444444444433322 234555666665542 33333 333
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHH
Q 004114 516 GVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 516 ~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
.|-.++...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 333455556666666666666544
No 252
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=83.49 E-value=13 Score=35.72 Aligned_cols=60 Identities=20% Similarity=0.173 Sum_probs=27.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~ 441 (773)
.++.++..|+-+.--+++.++.+. -.+++.....+..||.+.|+..++.+++.+..+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344555555555555555444431 234445555555555555555555555555555553
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=83.37 E-value=7 Score=37.84 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=25.1
Q ss_pred CCChHHHHHHHHHhhcC------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 458 CDSMDDAFSVFSNMTER------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~~------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
.|++++|++.|+.+..+ ..-+---|+.+|.+.+++++|+..++++++.
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45555555555555432 2233344555555566666666666555553
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=82.41 E-value=17 Score=45.71 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHhcC--ChhHHHHh
Q 004114 347 IQNGMMASQVLNNCKHED--DFAEASRS 372 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g--~~~~A~~v 372 (773)
.|+ .-.-.+|.+|.+.+ .+++|+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~k 814 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQK 814 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHH
Confidence 344 33446777888877 66666664
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.29 E-value=9.8 Score=40.53 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCc-chhhhHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLK--PDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSM-KHYVSIVD 555 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~--Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~-~tyn~LI~ 555 (773)
|+.-+..| +.|++.+|...|...++..-. -..-.+-.|..++...|+.++|..+|..+.++++-.|.. +..--|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444433 344466666666666554210 111234445555556666666666666665554433332 34444444
Q ss_pred HHHhCCCHHHHHHHHHhC
Q 004114 556 MLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 556 ~y~r~G~l~eA~~lf~~M 573 (773)
...+.|+.++|..+|++.
T Consensus 224 ~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 224 SLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 455555555555555544
No 256
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.17 E-value=1.3e+02 Score=36.63 Aligned_cols=107 Identities=12% Similarity=0.131 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004114 512 QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRM 591 (773)
Q Consensus 512 ~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~ 591 (773)
.|.+-.+.-|...|.-.+|.++-.+. . .||...|-.=+.+++..++|++-+++-..+. ...=|.-.+.+|.+
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLK 756 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHh
Confidence 34455555666777777777654333 2 2677777777788888888888888777762 12334456777888
Q ss_pred cCChhHHHHHHHHHHHcCCCCchHHHHcCCchhhhh
Q 004114 592 HGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPVNAS 627 (773)
Q Consensus 592 ~G~~e~A~~~~e~m~el~p~~~~~y~~aG~~~~~v~ 627 (773)
.|+.++|.+.+-+.-.+. +...+|...|.+.+++.
T Consensus 757 ~~n~~EA~KYiprv~~l~-ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGLQ-EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred cccHHHHhhhhhccCChH-HHHHHHHHhccHHHHHH
Confidence 888887776665544332 23345666666654433
No 257
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.78 E-value=1.1e+02 Score=35.66 Aligned_cols=169 Identities=9% Similarity=0.040 Sum_probs=124.3
Q ss_pred CChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 004114 364 DDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL 443 (773)
Q Consensus 364 g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~p 443 (773)
|-+.-..+++.-+.+.++|.-+.++-.+.-+..+..+|+.-| -+-..|-.++..|... .-+.-..+++.+++..+.
T Consensus 55 g~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn- 130 (711)
T COG1747 55 GIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN- 130 (711)
T ss_pred HHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-
Confidence 444444455566677789999999999999999999999875 3567788899999888 567778899988887665
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC---------HhHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHH
Q 004114 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTERD---------LTSWDTMITGFAKNGLGEDAVDIFSQFKQ-AGLKPDDQI 513 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d---------~~tyn~LI~ay~~~G~~deAl~Lf~eM~~-~Gv~Pd~~T 513 (773)
|++...-|.+-|-+ ++.+.|..+|.+...+= -..|.-|+..- ..+.|..+.+..++.. .|..--.+.
T Consensus 131 Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl 207 (711)
T COG1747 131 DVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVL 207 (711)
T ss_pred hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHH
Confidence 66666777777777 88888888888776431 12677666532 2456677777777654 355555667
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 514 FIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 514 y~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
+--+-.-|....++++|++++..+.+
T Consensus 208 ~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 208 MQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHhh
Confidence 77777888889999999999886644
No 258
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.76 E-value=1.4e+02 Score=36.92 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=95.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH----H---HHHHHHHH-HHhcCCHHHHHHHHHHHHHh----CCCCCHHHHHHH
Q 004114 384 GLVKEGKVKEAIEVLGLLEKQCISVDL----P---TFSQLMQA-CGDAKALEEAKAVHEHVERL----LSPLRVSTYNGI 451 (773)
Q Consensus 384 a~~~~G~~~eAl~lf~~M~~~Gv~Pd~----~---ty~~LL~a-~~~~g~le~A~~l~~~m~k~----G~~pd~~tynaL 451 (773)
......++.+|..+..++...--.|+. . .+..|-.. ....++++.|..+-+..... -..+.++.+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 445677888888888777654222221 1 22222211 12456777777777766654 223455666667
Q ss_pred HHHHHhCCChHHHHHHHHHhhc----CCHhH---HHHHHH--HHHHcCC--hHHHHHHHHHHHHC--CCC----CCHHHH
Q 004114 452 LKMYSECDSMDDAFSVFSNMTE----RDLTS---WDTMIT--GFAKNGL--GEDAVDIFSQFKQA--GLK----PDDQIF 514 (773)
Q Consensus 452 I~ay~k~G~l~eA~~lf~~M~~----~d~~t---yn~LI~--ay~~~G~--~deAl~Lf~eM~~~--Gv~----Pd~~Ty 514 (773)
..+..-.|+++.|..+..+..+ -++.. |..++. .+-..|. ..+.+..|...... .-+ +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7777777888888877665443 24443 333322 2334452 23333333333221 111 223355
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHHhcCCCCCcc--hhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 515 IGVFSACSALG-DVVEGMLHFESMSKDYGIVPSMK--HYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 515 ~~LL~a~~~~G-~~deA~~if~~M~~~~Gi~Pd~~--tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
..++.++.+.. ...++..-+ +....+...|-.. .+.+|+..+...|++++|...++++
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~-~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGI-EVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcc-hhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55565555521 111111111 1111112222221 1236677778889999998888877
No 259
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=81.72 E-value=52 Score=31.76 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=42.1
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCC
Q 004114 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGI 543 (773)
Q Consensus 475 d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi 543 (773)
+..-.+.-+..+...|+-|.-.+++.++.+ +-+|+......+..||.+.|+..++-+++.+.-+. |+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 334455667777788888888888877765 34567777778888888888888888877776554 54
No 260
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=81.52 E-value=5.4 Score=44.68 Aligned_cols=51 Identities=25% Similarity=0.271 Sum_probs=38.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHH
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQCISVDLP----TFSQLMQACGDAKALEEAKAVHE 434 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~----ty~~LL~a~~~~g~le~A~~l~~ 434 (773)
.-+|+.|+....+.+|+..++.|.. |.. .|+.|-.||.-.+++++|++.|.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 4578999999999999999888743 433 45566667777788899988875
No 261
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=80.03 E-value=15 Score=39.71 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=59.2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHc---CCChHHHHHHHHHHHHhcCCCC-Ccch
Q 004114 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA-GLKPDDQIFIGVFSACSA---LGDVVEGMLHFESMSKDYGIVP-SMKH 549 (773)
Q Consensus 475 d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~-Gv~Pd~~Ty~~LL~a~~~---~G~~deA~~if~~M~~~~Gi~P-d~~t 549 (773)
|...|-.|-..|...|+++.|..-|..-.+. |-. ...+..+-.++.. ..+-.++..+|+++.+. .| ++..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~---D~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARALLRQALAL---DPANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc---CCccHHH
Confidence 6777888888888888888888877776552 222 2333333333322 22344556666666442 23 3344
Q ss_pred hhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 004114 550 YVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMN 587 (773)
Q Consensus 550 yn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~ 587 (773)
-..|.-.+...|++.+|...++.| ..-|....|..+|.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 444455566666666666666666 32333334444443
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=78.84 E-value=22 Score=34.42 Aligned_cols=16 Identities=19% Similarity=0.002 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHcCCCC
Q 004114 597 LGDRCAEIVEQLDPSR 612 (773)
Q Consensus 597 ~A~~~~e~m~el~p~~ 612 (773)
.|...++.+.+.-|++
T Consensus 117 ~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 117 QAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHCcCC
Confidence 4455555555556655
No 263
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.00 E-value=32 Score=37.17 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=81.0
Q ss_pred HcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhCCChH
Q 004114 387 KEGKVKEAIEVLGLLEK-QCISVDLPTFSQLMQACGD-A-KALEEAKAVHEHVERL-LSPLRVSTYNGILKMYSECDSMD 462 (773)
Q Consensus 387 ~~G~~~eAl~lf~~M~~-~Gv~Pd~~ty~~LL~a~~~-~-g~le~A~~l~~~m~k~-G~~pd~~tynaLI~ay~k~G~l~ 462 (773)
++..+.+|+.+|+.... ..+--|..+...||+.... . ..+..--++.+.+... +-.++..+-..+|..+++.+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 34456677777774322 2356688888888888875 2 2344455555555543 45677778888999999999999
Q ss_pred HHHHHHHHhhc-----CCHhHHHHHHHHHHHcCChHHHHHHHHH
Q 004114 463 DAFSVFSNMTE-----RDLTSWDTMITGFAKNGLGEDAVDIFSQ 501 (773)
Q Consensus 463 eA~~lf~~M~~-----~d~~tyn~LI~ay~~~G~~deAl~Lf~e 501 (773)
.-.++++.... .|...|..+|......|+..-+.++..+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 99999886652 3888899999999999987666555543
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=77.90 E-value=27 Score=33.54 Aligned_cols=88 Identities=17% Similarity=0.091 Sum_probs=55.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHhCC
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGI---LKMYSECD 459 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaL---I~ay~k~G 459 (773)
-+++..|+++.|++.|.+.+.. .+-....|+.-..++--.|+.++|+.=+++.++..-.-+...+.+. -..|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3566778888888888777664 2235667787777777778888888777777665222232222222 23455667
Q ss_pred ChHHHHHHHHHh
Q 004114 460 SMDDAFSVFSNM 471 (773)
Q Consensus 460 ~l~eA~~lf~~M 471 (773)
+.++|..=|+..
T Consensus 130 ~dd~AR~DFe~A 141 (175)
T KOG4555|consen 130 NDDAARADFEAA 141 (175)
T ss_pred chHHHHHhHHHH
Confidence 777777666654
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=77.07 E-value=91 Score=34.87 Aligned_cols=96 Identities=21% Similarity=0.117 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHh---cCCC
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQ----AGLKPDDQ-----IFIGVFSACSALGDVVEGMLHFESMSKD---YGIV 544 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~----~Gv~Pd~~-----Ty~~LL~a~~~~G~~deA~~if~~M~~~---~Gi~ 544 (773)
..|-+|-+-|.+..+.++|+-+..+..+ .+++--.. +.-.|--++...|.+..|.+.-++..+- .|-.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 3455556666666666665544433322 12221111 1222334555666666665555443221 1222
Q ss_pred C-CcchhhhHHHHHHhCCCHHHHHHHHHh
Q 004114 545 P-SMKHYVSIVDMLGSTGYLDEALEFIEK 572 (773)
Q Consensus 545 P-d~~tyn~LI~~y~r~G~l~eA~~lf~~ 572 (773)
+ -.....+|.+.|...|+++.|+.-++.
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 2 123344667777777777777766653
No 266
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=76.87 E-value=19 Score=36.13 Aligned_cols=57 Identities=9% Similarity=0.099 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCC------HhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTERD------LTSWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~~d------~~tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
.+..+.+-|++.|++++|.+.|.++.+.. +..+-.+|......+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45566666666666666666666665432 2234555555555666666555555443
No 267
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.62 E-value=3.1 Score=39.51 Aligned_cols=126 Identities=13% Similarity=0.311 Sum_probs=79.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhc----CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 004114 450 GILKMYSECDSMDDAFSVFSNMTE----RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALG 525 (773)
Q Consensus 450 aLI~ay~k~G~l~eA~~lf~~M~~----~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G 525 (773)
.+|+.+.+.+.++.+..+++.+.. .+....+.++..|++.++.++.+++++. .+..-...++..|.+.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 356677777778888777777763 2567788888888888777887777761 22233455677777778
Q ss_pred ChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 004114 526 DVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNL 595 (773)
Q Consensus 526 ~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~ 595 (773)
.+++|..++.++... .. .++.+...+++++|.+++.++ ++..+|..++..|...+..
T Consensus 85 l~~~a~~Ly~~~~~~----~~------al~i~~~~~~~~~a~e~~~~~---~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNH----DE------ALEILHKLKDYEEAIEYAKKV---DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SHHHHHHHHHCCTTH----TT------CSSTSSSTHCSCCCTTTGGGC---SSSHHHHHHHHHHCTSTCT
T ss_pred hHHHHHHHHHHcccH----HH------HHHHHHHHccHHHHHHHHHhc---CcHHHHHHHHHHHHhcCcc
Confidence 777777766654211 11 111233445566666555554 3577888888888776653
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=75.95 E-value=18 Score=39.03 Aligned_cols=74 Identities=11% Similarity=0.271 Sum_probs=52.5
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH----hcCCCCCcchh
Q 004114 476 LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK----DYGIVPSMKHY 550 (773)
Q Consensus 476 ~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~----~~Gi~Pd~~ty 550 (773)
..++..++..+...|+.+.+.+.++++.... .-|...|..||.+|...|+...|+..|+.+.+ +.|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3466778888888888888888888887753 23667788888888888888888888777644 23444444433
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=75.74 E-value=34 Score=34.23 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC------cc
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ--IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS------MK 548 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~--Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd------~~ 548 (773)
..+..+..-|++.|+.++|++.|.+|...-..|... .+..+|..+...+++..+..+..+......-.-| ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 467889999999999999999999999876655544 5788889999999999998887776543111111 12
Q ss_pred hhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 549 HYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 549 tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+|..|. +...+++.+|-++|-+.
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 333333 23467899998888776
No 270
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.58 E-value=15 Score=33.64 Aligned_cols=70 Identities=17% Similarity=0.272 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 494 DAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+...-+..+....+.|+.....+.|.||.+..++..|.++|+.++.+.| +....|..+++ +-.-+++++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq---------ElkPtl~EL 96 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ---------ELKPTLEEL 96 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH---------HHhhHHHHh
Confidence 4555555666677899999999999999999999999999999877644 34447877774 445555555
Q ss_pred C
Q 004114 574 P 574 (773)
Q Consensus 574 ~ 574 (773)
|
T Consensus 97 G 97 (108)
T PF02284_consen 97 G 97 (108)
T ss_dssp T
T ss_pred C
Confidence 4
No 271
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.27 E-value=20 Score=39.03 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-C--------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004114 440 LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE-R--------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD 510 (773)
Q Consensus 440 G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~-~--------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd 510 (773)
|....+.+...++..-....++++|+..+-++.. | ..++|--++ ..=++++|+.++..=..-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 5555666666677666667788888887777652 2 233333333 23367788888888888899999
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 511 DQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 511 ~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
..|+..||+.+.+.+++.+|..+.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999998888776665543
No 272
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.11 E-value=13 Score=33.56 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHH
Q 004114 491 LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFI 570 (773)
Q Consensus 491 ~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf 570 (773)
+.-++.+-+..+....+.|+.....+.|+||.+..++..|.++|+.++.+.| .....|..+++ +...++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq---------eikp~l 90 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ---------EIKPTL 90 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH---------HHhHHH
Confidence 3445666666677778899999999999999999999999999998865534 24456766663 445555
Q ss_pred HhCCC
Q 004114 571 EKMPM 575 (773)
Q Consensus 571 ~~M~~ 575 (773)
+++|+
T Consensus 91 ~ELGI 95 (103)
T cd00923 91 KELGI 95 (103)
T ss_pred HHHCC
Confidence 55553
No 273
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.64 E-value=34 Score=36.53 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=77.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCC-CCcchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 004114 513 IFIGVFSACSALGDVVEGMLHFESMSKDYGIV-PSMKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPD-VDVWEKLM 586 (773)
Q Consensus 513 Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~-Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd-~~ty~~LI 586 (773)
.|..-+..+ +.|++.+|...|....+.|.-. -....+--|-+.+...|+.++|..+|..+ |-.|. ....-.|-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577777665 6788999999999998874211 12345667899999999999999999888 33333 35566677
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 587 NLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 587 ~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
......|+.++|..+++.+.+--|...
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 788899999999999999999888764
No 274
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=74.48 E-value=97 Score=31.74 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=13.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHH
Q 004114 515 IGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 515 ~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
.+++-.|.+.-.+.+++++++.|.
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~ 159 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLH 159 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666553
No 275
>PRK11906 transcriptional regulator; Provisional
Probab=73.37 E-value=1.1e+02 Score=35.36 Aligned_cols=112 Identities=11% Similarity=0.024 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHHh---------cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Q 004114 390 KVKEAIEVLGLLEK-QCISVDLP-TFSQLMQACGD---------AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458 (773)
Q Consensus 390 ~~~eAl~lf~~M~~-~Gv~Pd~~-ty~~LL~a~~~---------~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~ 458 (773)
..+.|+.+|.+... ..+.|+-. .|..+..++.. ..+..+|.++-...++.+ +-|......+-.++.-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 34568888888772 23455432 33322222111 123445555555555543 22455555555555555
Q ss_pred CChHHHHHHHHHhh--cCC-HhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004114 459 DSMDDAFSVFSNMT--ERD-LTSWDTMITGFAKNGLGEDAVDIFSQF 502 (773)
Q Consensus 459 G~l~eA~~lf~~M~--~~d-~~tyn~LI~ay~~~G~~deAl~Lf~eM 502 (773)
++.+.|..+|++.. .|+ ..+|...--.+.-.|+.++|.+.+++-
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666554 232 223333333334456666666666663
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=73.19 E-value=85 Score=35.12 Aligned_cols=219 Identities=13% Similarity=0.075 Sum_probs=115.5
Q ss_pred cCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCC---CHHHHHHHHHHHHhCCC
Q 004114 388 EGKVKEAIEVLGLLEKQ--CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL--LSPL---RVSTYNGILKMYSECDS 460 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~--Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~--G~~p---d~~tynaLI~ay~k~G~ 460 (773)
..+.++|+..|.+-+.. ...--..+|..+..+.++.|..++++..--.-+.. ...- -...|-.|-+++-+--+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444332 01111235666666677777666655432211111 0110 12234444444444444
Q ss_pred hHHHHHHHHHhhc-C-------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---C--CCHHHHHHHHHHHHcCCCh
Q 004114 461 MDDAFSVFSNMTE-R-------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL---K--PDDQIFIGVFSACSALGDV 527 (773)
Q Consensus 461 l~eA~~lf~~M~~-~-------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv---~--Pd~~Ty~~LL~a~~~~G~~ 527 (773)
..+++.+-..-.. | .-...-+|-.++.-.+-++++++-|+...+--- . .....+..|-.-+....++
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 4444444332221 1 112233455666667778999999887654211 1 1234688888888888999
Q ss_pred HHHHHHHHH---HHHhcCCCCCcchhhh-----HHHHHHhCCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHH
Q 004114 528 VEGMLHFES---MSKDYGIVPSMKHYVS-----IVDMLGSTGYLDEALEFIEKM-------PMEPD-VDVWEKLMNLCRM 591 (773)
Q Consensus 528 deA~~if~~---M~~~~Gi~Pd~~tyn~-----LI~~y~r~G~l~eA~~lf~~M-------~~~Pd-~~ty~~LI~a~~~ 591 (773)
++|.-+... +...+++.--..-|.+ |.-+|...|++..|.+.-++. |-.+- ......+.+.|..
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 988654433 2334454332223333 334566677776666665543 42222 3345567788999
Q ss_pred cCChhHHHHHHHHHH
Q 004114 592 HGNLELGDRCAEIVE 606 (773)
Q Consensus 592 ~G~~e~A~~~~e~m~ 606 (773)
.|+.|.|.+-++...
T Consensus 259 ~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 259 RGDLERAFRRYEQAM 273 (518)
T ss_pred cccHhHHHHHHHHHH
Confidence 999998866665443
No 277
>PRK11906 transcriptional regulator; Provisional
Probab=73.18 E-value=1.1e+02 Score=35.42 Aligned_cols=156 Identities=11% Similarity=0.067 Sum_probs=91.4
Q ss_pred HHH--HHHHHHHHhc-----CCHHHHHHHHHHHHHh-CCCCC-HHHHHHHHHHHHh---------CCChHHHHHHHHHhh
Q 004114 411 PTF--SQLMQACGDA-----KALEEAKAVHEHVERL-LSPLR-VSTYNGILKMYSE---------CDSMDDAFSVFSNMT 472 (773)
Q Consensus 411 ~ty--~~LL~a~~~~-----g~le~A~~l~~~m~k~-G~~pd-~~tynaLI~ay~k---------~G~l~eA~~lf~~M~ 472 (773)
..| ...+.+.... .+.+.|+.+|.+.+.. .+.|+ ...|..+-.++.. .....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 5566665542 2467888888888732 35555 3334333333221 223455666665555
Q ss_pred c---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC--
Q 004114 473 E---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ-IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS-- 546 (773)
Q Consensus 473 ~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~-Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-- 546 (773)
+ .|...-..+-.++...++++.|..+|++-.. +.||.. +|...-..+...|+.++|.+.+++..+ +.|.
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr---LsP~~~ 406 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ---LEPRRR 406 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCchhh
Confidence 3 2666666666666777888999999988776 446643 444444445677888888888877432 3443
Q ss_pred -cchhhhHHHHHHhCCCHHHHHHHHHh
Q 004114 547 -MKHYVSIVDMLGSTGYLDEALEFIEK 572 (773)
Q Consensus 547 -~~tyn~LI~~y~r~G~l~eA~~lf~~ 572 (773)
..+.-..|++|+.. .+++|..++-+
T Consensus 407 ~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 407 KAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 22333344566544 46777777644
No 278
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=73.05 E-value=46 Score=37.49 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSAC 521 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~ 521 (773)
..+++.|.-+|.|.+++.+|+..-+...+ +++-..--=-.+|...|+++.|...|.++++ +.|+-.+-..=|..|
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 34667777788888888888877776653 3554444445677777888888888888877 567666655545444
Q ss_pred HcC-CCh-HHHHHHHHHHHH
Q 004114 522 SAL-GDV-VEGMLHFESMSK 539 (773)
Q Consensus 522 ~~~-G~~-deA~~if~~M~~ 539 (773)
.+. ... +...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 332 222 223456666643
No 279
>PRK15331 chaperone protein SicA; Provisional
Probab=72.85 E-value=73 Score=31.71 Aligned_cols=82 Identities=10% Similarity=-0.019 Sum_probs=45.0
Q ss_pred hCCChHHHHHHHHHhh--cC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 004114 457 ECDSMDDAFSVFSNMT--ER-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLH 533 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~--~~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~i 533 (773)
..|++++|+.+|.-+. .+ +..-|..|-.+|-..+.+++|+.+|........ -|...+-.+-.++...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHH
Confidence 3466666666665443 22 444455566666666666666666665544332 1222233334455566667777766
Q ss_pred HHHHHH
Q 004114 534 FESMSK 539 (773)
Q Consensus 534 f~~M~~ 539 (773)
|+....
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 666654
No 280
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.53 E-value=1.4e+02 Score=31.72 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=31.7
Q ss_pred HhCCCHHHHHHHHHhC---CCCCCHHHHH---HHHH-HHHHc--CChhHHHHHHHHHHHcCCCC
Q 004114 558 GSTGYLDEALEFIEKM---PMEPDVDVWE---KLMN-LCRMH--GNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 558 ~r~G~l~eA~~lf~~M---~~~Pd~~ty~---~LI~-a~~~~--G~~e~A~~~~e~m~el~p~~ 612 (773)
+..++..+|.++|+.. .+..+..-|. .++. ++|.. .+.-.+.++++...+++|.-
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 4567777888888776 1222222222 1222 22322 45555788889999998865
No 281
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=72.26 E-value=7 Score=27.21 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 580 DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 580 ~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
.+|..+-.++...|++++|...++...+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888899999999999999999998886
No 282
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.67 E-value=1.2 Score=42.34 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=36.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHH
Q 004114 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAV 496 (773)
Q Consensus 417 L~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl 496 (773)
+..+.+.+.++....+++.+.+.+...+....+.|+..|++.++.++.+++++.... .-...++..|.+.|.+++|.
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAV 90 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHH
Confidence 333444444455555555555444344455555555555555554555554442211 22233444444444444444
Q ss_pred HHHHH
Q 004114 497 DIFSQ 501 (773)
Q Consensus 497 ~Lf~e 501 (773)
-++.+
T Consensus 91 ~Ly~~ 95 (143)
T PF00637_consen 91 YLYSK 95 (143)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 44443
No 283
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=71.08 E-value=10 Score=26.04 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 580 DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 580 ~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
..|..+-..+...|++++|.+.++...+++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677788889999999999999999888864
No 284
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.90 E-value=1e+02 Score=30.10 Aligned_cols=52 Identities=10% Similarity=0.110 Sum_probs=39.7
Q ss_pred CHhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 475 DLTSWDTMITGFAKNGL-GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 475 d~~tyn~LI~ay~~~G~-~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
+-.+|.+++.+.+...- ---+..+|.-|++.+.+++..-|..||.+|.+.-.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 55678888888866655 34567888888888888888889999988876533
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=69.06 E-value=9.3 Score=27.44 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQF 502 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM 502 (773)
|..|-..|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666653
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.04 E-value=72 Score=31.57 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=24.6
Q ss_pred HcCCChHHHHHHHHHHHHhcCCCCCc---chhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 522 SALGDVVEGMLHFESMSKDYGIVPSM---KHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~~~Gi~Pd~---~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
...++.+++..++..|.- +.|.. .++.. -.+.+.|++.+|..+|+++
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDG--WLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHH
Confidence 345566666666665532 33432 22222 2345666666666666666
No 287
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.26 E-value=52 Score=37.04 Aligned_cols=193 Identities=9% Similarity=-0.042 Sum_probs=89.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHhCCC
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPT--FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVS--TYNGILKMYSECDS 460 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~t--y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~--tynaLI~ay~k~G~ 460 (773)
-++.|+.+-+ +.+.+.|..|+... ..+.|..++..|+.+.+ +.+++.|..|+.. ...+.+...++.|+
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3445555433 33445566655432 23445555666776544 3444555544432 12234555667788
Q ss_pred hHHHHHHHHHhhcC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHcCCChHHHHHHH
Q 004114 461 MDDAFSVFSNMTER----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF--IGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 461 l~eA~~lf~~M~~~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty--~~LL~a~~~~G~~deA~~if 534 (773)
.+.+..+++.-... +..-++ .+...+..|+. ++++.+.+.|..|+.... .+.|...+..|+.+-+..++
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 87777777643321 111122 23333445554 344445556666554321 22333444566665544443
Q ss_pred HHHHHhcCCCCC---cchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCChhH
Q 004114 535 ESMSKDYGIVPS---MKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDV---WEKLMNLCRMHGNLEL 597 (773)
Q Consensus 535 ~~M~~~~Gi~Pd---~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~t---y~~LI~a~~~~G~~e~ 597 (773)
+ .|..++ ..-. +.+...+..|..+-+.-+++ .|..++... ..+++...+..|+.+.
T Consensus 156 ~-----~g~~~~~~d~~g~-TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~i 217 (413)
T PHA02875 156 D-----HKACLDIEDCCGC-TPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKIDI 217 (413)
T ss_pred h-----cCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHHH
Confidence 2 243332 2222 23334455677665554444 333333221 1234443445566543
No 288
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=67.25 E-value=79 Score=35.85 Aligned_cols=131 Identities=11% Similarity=0.068 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHH---hcCC-CCCcc
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQ----AGLK-PDDQIFIGVFSACSALGDVVEGMLHFESMSK---DYGI-VPSMK 548 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~----~Gv~-Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~---~~Gi-~Pd~~ 548 (773)
.|..|-..|...|+++.|+...+.-++ -|-+ .--..+..|-.++.-.|.++.|.++|+.-.. ..|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344455555555666666554433221 1211 1123556666666666666666666654221 1111 11123
Q ss_pred hhhhHHHHHHhCCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 549 HYVSIVDMLGSTGYLDEALEFIEKM-------P-MEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 549 tyn~LI~~y~r~G~l~eA~~lf~~M-------~-~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
.+-+|-..|.-...+.+|..++.+- + ..-....+-+|-.++...|..+.|..++++-.++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3344455555445555555554322 1 0113456667778887788878887777665543
No 289
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=66.01 E-value=2.5e+02 Score=32.19 Aligned_cols=101 Identities=13% Similarity=0.037 Sum_probs=46.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
-|+++...| ..|++++....... ++...+.....++........+..+.+.+ -.++..+-..+++++.+.+.
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCCc
Confidence 466666666 45566555555331 23333333333333222222222222222 12344455566666666665
Q ss_pred hHHHHHHHHHhhcCCHhHHHHHHHHHHHc
Q 004114 461 MDDAFSVFSNMTERDLTSWDTMITGFAKN 489 (773)
Q Consensus 461 l~eA~~lf~~M~~~d~~tyn~LI~ay~~~ 489 (773)
.+..-.+..-...++...--+.+.++...
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r 144 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAH 144 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhh
Confidence 55555544444444544444444555543
No 290
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=65.91 E-value=59 Score=36.64 Aligned_cols=19 Identities=5% Similarity=-0.043 Sum_probs=12.8
Q ss_pred HHHhCCChHHHHHHHHHhh
Q 004114 454 MYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 454 ay~k~G~l~eA~~lf~~M~ 472 (773)
.|.|.|++..|...|++..
T Consensus 217 ~~fK~gk~~~A~~~Yerav 235 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAV 235 (397)
T ss_pred HHHhhchHHHHHHHHHHHH
Confidence 4667777777777776643
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=65.43 E-value=1.1e+02 Score=29.93 Aligned_cols=36 Identities=8% Similarity=0.174 Sum_probs=17.2
Q ss_pred HhCCChHHHHHHHHHhhcCC-HhHHHHHHHHHHHcCC
Q 004114 456 SECDSMDDAFSVFSNMTERD-LTSWDTMITGFAKNGL 491 (773)
Q Consensus 456 ~k~G~l~eA~~lf~~M~~~d-~~tyn~LI~ay~~~G~ 491 (773)
...|++++|.++|+++.+.. ...|..-+.++|..-.
T Consensus 55 i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 55 IARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34555555655555555432 2244444444444333
No 292
>PRK12798 chemotaxis protein; Reviewed
Probab=65.16 E-value=2.5e+02 Score=32.04 Aligned_cols=152 Identities=13% Similarity=0.168 Sum_probs=104.0
Q ss_pred CCChHHHHHHHHHhhc----CCHhHHHHHHHHHHH-cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHcCCChH
Q 004114 458 CDSMDDAFSVFSNMTE----RDLTSWDTMITGFAK-NGLGEDAVDIFSQFKQAGLKPDD----QIFIGVFSACSALGDVV 528 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~----~d~~tyn~LI~ay~~-~G~~deAl~Lf~eM~~~Gv~Pd~----~Ty~~LL~a~~~~G~~d 528 (773)
.|+.++|.+.|..+.. +.+.-|-+|+.+-.. ..+..+|+++|+..+-. .|-+ ...---|..+...|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5889999999988863 355667777765554 45688999999887653 3433 23444455667889999
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhh-HHHHHH---hCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 529 EGMLHFESMSKDYGIVPSMKHYVS-IVDMLG---STGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 529 eA~~if~~M~~~~Gi~Pd~~tyn~-LI~~y~---r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
+++.+-.....+|.-.|-...|-. ++.++. ..-..+.-.+++..|.-.--..+|-.+-..-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988877777777666664433332 233333 3334566667777774223367888888888999999999999998
Q ss_pred HHHcCCC
Q 004114 605 VEQLDPS 611 (773)
Q Consensus 605 m~el~p~ 611 (773)
...+...
T Consensus 283 A~~L~~~ 289 (421)
T PRK12798 283 ALKLADP 289 (421)
T ss_pred HHHhccC
Confidence 8888533
No 293
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=65.02 E-value=2e+02 Score=30.86 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHH
Q 004114 492 GEDAVDIFSQFKQAGL----KPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEAL 567 (773)
Q Consensus 492 ~deAl~Lf~eM~~~Gv----~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~ 567 (773)
.++|.++|+++...+. ..+...-..++....+.|..++-..+++.... ..+......++.+++...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHH
Confidence 4566777777666422 23444455566666666665554444433322 245566667777777777766666
Q ss_pred HHHHhC
Q 004114 568 EFIEKM 573 (773)
Q Consensus 568 ~lf~~M 573 (773)
++++..
T Consensus 222 ~~l~~~ 227 (324)
T PF11838_consen 222 RLLDLL 227 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.83 E-value=1.5e+02 Score=29.39 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=22.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 004114 422 DAKALEEAKAVHEHVERLLSPLRV---STYNGILKMYSECDSMDDAFSVFSNMTE 473 (773)
Q Consensus 422 ~~g~le~A~~l~~~m~k~G~~pd~---~tynaLI~ay~k~G~l~eA~~lf~~M~~ 473 (773)
+.++.+++..++.-|.-. .|.. .++..+ .+.+.|++.+|+++|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGW--LHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhc
Confidence 444555555555555442 2221 222222 23445566666666665553
No 295
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.16 E-value=1.7e+02 Score=29.67 Aligned_cols=121 Identities=16% Similarity=0.082 Sum_probs=54.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHH-HHH--HHHhCCC
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLP-TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNG-ILK--MYSECDS 460 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~-ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tyna-LI~--ay~k~G~ 460 (773)
+++.+..++|+..|.++.+.|..--.+ .---+....+..|+...|...|.++-+....|-+.-=.+ |=. .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456666677777777766665432111 111112223455666666666666655433333221111 111 1233455
Q ss_pred hHHHHHHHHHhhcC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 461 MDDAFSVFSNMTER----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 461 l~eA~~lf~~M~~~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
+++.....+-+..+ -...-.+|--+-.+.|++.+|..+|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 55554444443321 1122233444444555555555555555443
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.15 E-value=65 Score=38.17 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=20.7
Q ss_pred hCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~e 501 (773)
+.|+++.|..+..+. .+..-|..|-.+....|++..|.+.|.+
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHh
Confidence 345555554444332 2344455555555555555555555543
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=63.65 E-value=35 Score=31.28 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHH
Q 004114 394 AIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL-LSPLRVSTYNGILK 453 (773)
Q Consensus 394 Al~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-G~~pd~~tynaLI~ 453 (773)
..+-+..+....+.|++.+..+.|+||-+..++..|.++++-++.+ |.. ..+|..+|.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 4444555556667778878888888888888888888887776655 322 225555543
No 298
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=63.55 E-value=60 Score=38.09 Aligned_cols=127 Identities=13% Similarity=0.188 Sum_probs=68.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhh-c-CCHh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004114 449 NGILKMYSECDSMDDAFSVFSNMT-E-RDLT---SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA 523 (773)
Q Consensus 449 naLI~ay~k~G~l~eA~~lf~~M~-~-~d~~---tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~ 523 (773)
..|+.-|.+.+++++|..++..|. . -... +.+.++..+.+..--++....++.+.-.=..|....--.++..|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 457778999999999999999886 1 1223 3344445555555556666666665543222322211122222221
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 004114 524 LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGD 599 (773)
Q Consensus 524 ~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~ 599 (773)
-=.+-|+++|. .+.|.+++++|..+--+++ .+| .+--+-..-...|+.+.|.
T Consensus 492 -~V~~~aRRfFh--------------------hLLR~~rfekAFlLAvdi~-~~D--LFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 492 -PVSDLARRFFH--------------------HLLRYQRFEKAFLLAVDIG-DRD--LFMDLHYLAKDKGELALAE 543 (545)
T ss_pred -HHHHHHHHHHH--------------------HHHHhhHHHHHHHHHHhcc-chH--HHHHHHHHHHhccchhhhh
Confidence 01112333333 3456688899988888876 233 3333333334556665554
No 299
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=63.49 E-value=1.1e+02 Score=29.61 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=59.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc----CCHhH---HHHHHHHHHHcCC
Q 004114 419 ACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE----RDLTS---WDTMITGFAKNGL 491 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~----~d~~t---yn~LI~ay~~~G~ 491 (773)
+++..|+++.|++.|.+.+..- +-....||.-..+|.-.|+.++|+.=+++..+ ++-.. |--=-..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4677888999999998887753 34677888888888888888888887776653 12222 2222234566677
Q ss_pred hHHHHHHHHHHHHCC
Q 004114 492 GEDAVDIFSQFKQAG 506 (773)
Q Consensus 492 ~deAl~Lf~eM~~~G 506 (773)
-++|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777776665555
No 300
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=63.07 E-value=40 Score=30.59 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHH
Q 004114 393 EAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL-LSPLRVSTYNGILK 453 (773)
Q Consensus 393 eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-G~~pd~~tynaLI~ 453 (773)
++.+-+..+....+.|++....+.|+||-+..++..|.++++-++.+ |. ...+|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44555566666677888888888888888888888888888766643 32 3335555543
No 301
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.79 E-value=76 Score=32.03 Aligned_cols=16 Identities=6% Similarity=0.034 Sum_probs=6.7
Q ss_pred HHcCChhHHHHHHHHH
Q 004114 590 RMHGNLELGDRCAEIV 605 (773)
Q Consensus 590 ~~~G~~e~A~~~~e~m 605 (773)
.+.|++..|...++.+
T Consensus 178 ~kagd~a~A~~~F~qi 193 (221)
T COG4649 178 YKAGDFAKAKSWFVQI 193 (221)
T ss_pred HhccchHHHHHHHHHH
Confidence 3444444444444433
No 302
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.03 E-value=2.5e+02 Score=30.66 Aligned_cols=71 Identities=15% Similarity=0.272 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH----HhcCCCCCcchh
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMS----KDYGIVPSMKHY 550 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~----~~~Gi~Pd~~ty 550 (773)
.+..-..|..+|.+.+|..+-++.+... +.+...+-.|+..++..|+--.|.+.++.|. +.+|+..|...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 4445567888888888888888776642 2355567778888888888777776666654 345776665544
No 303
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.46 E-value=30 Score=37.83 Aligned_cols=48 Identities=13% Similarity=0.011 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 425 ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 425 ~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
+.+++..++..-+..|+-||-.+++.||+.+.+.+.+.+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666555444
No 304
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=59.37 E-value=15 Score=26.37 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
++..|-.+|.+.|++++|+.+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999998843
No 305
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=58.83 E-value=24 Score=26.41 Aligned_cols=26 Identities=12% Similarity=0.358 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
|..+...|...|++++|+++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444555555555555554444
No 306
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.35 E-value=2.6e+02 Score=29.83 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=82.3
Q ss_pred hcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHH
Q 004114 362 HEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGL----LEKQCISVDLPTFSQLMQACGDAKALE-EAKAVHEHV 436 (773)
Q Consensus 362 k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~----M~~~Gv~Pd~~ty~~LL~a~~~~g~le-~A~~l~~~m 436 (773)
+.+++++|.+++. .=...+.++|+..-|-++-.- +.+.++++|......++..+.....-+ +-..+.+.+
T Consensus 2 ~~kky~eAidLL~-----~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~a 76 (260)
T PF04190_consen 2 KQKKYDEAIDLLY-----SGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAA 76 (260)
T ss_dssp HTT-HHHHHHHHH-----HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHH
T ss_pred ccccHHHHHHHHH-----HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 4567777777521 123456667776665555433 345577777777667766666554221 223333333
Q ss_pred HH---hCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 004114 437 ER---LLS--PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD 511 (773)
Q Consensus 437 ~k---~G~--~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~ 511 (773)
++ .|- .-|......+-..|.+.|++.+|+.-|-.-..++...+-.++.-....|...++ |.
T Consensus 77 i~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dl 142 (260)
T PF04190_consen 77 IKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DL 142 (260)
T ss_dssp HHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HH
T ss_pred HHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hH
Confidence 33 222 235677888889999999999999888655444444443344333334444333 22
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 004114 512 QIFIGVFSACSALGDVVEGMLHFESMSKD 540 (773)
Q Consensus 512 ~Ty~~LL~a~~~~G~~deA~~if~~M~~~ 540 (773)
..-.++| -|.-.+++..|...+....+.
T Consensus 143 fi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 143 FIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 2222223 344567788888777666544
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=58.26 E-value=21 Score=25.57 Aligned_cols=26 Identities=12% Similarity=0.345 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
+++.|...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555555555555555555543
No 308
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.48 E-value=98 Score=28.42 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 426 LEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 426 le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
-++|..|-+.+...+-. .-.+--+-+..+...|++++|..+.+.+.-||++.|-+|-. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45666666655554322 22222233445667788888888888888888888877654 3567777777777777766
Q ss_pred CCCCCHHHHHH
Q 004114 506 GLKPDDQIFIG 516 (773)
Q Consensus 506 Gv~Pd~~Ty~~ 516 (773)
| .|-..+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 5 344555543
No 309
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.10 E-value=2e+02 Score=31.10 Aligned_cols=212 Identities=15% Similarity=0.246 Sum_probs=129.4
Q ss_pred hccHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCC
Q 004114 375 NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQ---CIS--VDLPTFSQLMQACGDAKALEEAKAVHEHVERL-----LSPLR 444 (773)
Q Consensus 375 ~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~---Gv~--Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-----G~~pd 444 (773)
|.++..+|..+.+.+++++.++.+.+|+.- .+. -+.-+.+++|+-.......+.-.++++.-++. +-..-
T Consensus 65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLW 144 (440)
T KOG1464|consen 65 FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLW 144 (440)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceee
Confidence 344445889999999999999999888632 121 24557788888777666666666666544332 11111
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcC--------C-------HhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CC
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTER--------D-------LTSWDTMITGFAKNGLGEDAVDIFSQFKQAG-LK 508 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~~--------d-------~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G-v~ 508 (773)
-.|-+.|-..|...+.+....+++.++... | ...|..=|..|.....-.+...+|++.+.-. .-
T Consensus 145 FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI 224 (440)
T KOG1464|consen 145 FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI 224 (440)
T ss_pred eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC
Confidence 123345667777777777778888777521 1 3467777888888888888888888765432 23
Q ss_pred CCHHHHHHHHHHHH-----cCCChHHHH-HHHHHHHHhcCCC--CC---cchhhhHHHHHHhCCCHHHHHHHHHhC---C
Q 004114 509 PDDQIFIGVFSACS-----ALGDVVEGM-LHFESMSKDYGIV--PS---MKHYVSIVDMLGSTGYLDEALEFIEKM---P 574 (773)
Q Consensus 509 Pd~~Ty~~LL~a~~-----~~G~~deA~-~if~~M~~~~Gi~--Pd---~~tyn~LI~~y~r~G~l~eA~~lf~~M---~ 574 (773)
|... ...+|+-|+ +.|.+++|. .+|+.. +.|.-. |. ..-|-.|..++.+.|- .-|+.- |
T Consensus 225 PHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAF-KNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKP 297 (440)
T KOG1464|consen 225 PHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAF-KNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKP 297 (440)
T ss_pred CchH-HHhHHHHcCCccccccchHHHHHhHHHHHH-hcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCC
Confidence 4443 456677775 467888886 444444 433322 22 2335566666666651 111111 2
Q ss_pred C--CCCHHHHHHHHHHHHHcC
Q 004114 575 M--EPDVDVWEKLMNLCRMHG 593 (773)
Q Consensus 575 ~--~Pd~~ty~~LI~a~~~~G 593 (773)
. .|.+...+.|+.||....
T Consensus 298 yKNdPEIlAMTnlv~aYQ~Nd 318 (440)
T KOG1464|consen 298 YKNDPEILAMTNLVAAYQNND 318 (440)
T ss_pred CCCCHHHHHHHHHHHHHhccc
Confidence 2 356777888999987653
No 310
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=56.77 E-value=2.8e+02 Score=29.88 Aligned_cols=62 Identities=11% Similarity=0.122 Sum_probs=38.3
Q ss_pred CcchhhhHHHHHHhCCCHHHHHHHHHhCCC-C----C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 546 SMKHYVSIVDMLGSTGYLDEALEFIEKMPM-E----P-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 546 d~~tyn~LI~~y~r~G~l~eA~~lf~~M~~-~----P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
...++..++..+.+.|.++.|...+..+.- . . ...+.-.-++.+...|+.++|...++.+.+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677777778888888888887777621 1 0 222333345555666777777766665554
No 311
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=56.39 E-value=97 Score=35.21 Aligned_cols=153 Identities=19% Similarity=0.114 Sum_probs=91.9
Q ss_pred HHHHhCCChHHHHHHHHHhhcCCHh-HHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHHHHHH---HHH------
Q 004114 453 KMYSECDSMDDAFSVFSNMTERDLT-SWDTMITGFA--KNGLGEDAVDIFSQFKQAGLKPDDQIFIGV---FSA------ 520 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~~~d~~-tyn~LI~ay~--~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~L---L~a------ 520 (773)
.++.-.|+.++|..+--.+.+-|.+ .+-.++.+.| -.+..+.|...|.+-+. +.||...-..+ ...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHh
Confidence 4455567777777776666654433 3344444333 35677888888877665 34665533222 222
Q ss_pred ----HHcCCChHHHHHHHHHHHHhcCCCCC-----cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-
Q 004114 521 ----CSALGDVVEGMLHFESMSKDYGIVPS-----MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLC- 589 (773)
Q Consensus 521 ----~~~~G~~deA~~if~~M~~~~Gi~Pd-----~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~- 589 (773)
..+.|.+.+|.+.|.+.+ ++.|+ ...|.....+..+.|++++|..--++. .+. ...++..|..|-
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c 330 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANC 330 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHH
Confidence 246788888888877553 44454 444555556677889999998877665 332 234444444443
Q ss_pred -HHcCChhHHHHHHHHHHHcCCC
Q 004114 590 -RMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 590 -~~~G~~e~A~~~~e~m~el~p~ 611 (773)
...++|+.|.+-++...+++.+
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 3456777777777766665443
No 312
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=55.68 E-value=15 Score=29.35 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=25.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 584 KLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 584 ~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
.|.-|+.+.|+++.|.+..+.+.+++|++..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45568899999999999999999999998544
No 313
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=55.33 E-value=20 Score=24.76 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 581 VWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 581 ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
+|..+-..+...|+++.|...++...+++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777788888888888888888887773
No 314
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.02 E-value=61 Score=36.46 Aligned_cols=16 Identities=13% Similarity=-0.236 Sum_probs=8.4
Q ss_pred hHHHHHHHHcCCCCCH
Q 004114 335 PNEGQYQSYSGNIQNG 350 (773)
Q Consensus 335 ~~~~~~m~~~gl~pd~ 350 (773)
.++..++++.|..++.
T Consensus 15 ~~iv~~Ll~~g~~~n~ 30 (413)
T PHA02875 15 LDIARRLLDIGINPNF 30 (413)
T ss_pred HHHHHHHHHCCCCCCc
Confidence 3445555556655543
No 315
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=54.50 E-value=64 Score=39.25 Aligned_cols=11 Identities=45% Similarity=0.649 Sum_probs=4.6
Q ss_pred hhHhhhhcCCC
Q 004114 14 LTALSKVSSSL 24 (773)
Q Consensus 14 ~~~~~~~~~~~ 24 (773)
|+|+++|-+++
T Consensus 645 l~a~~~~y~~L 655 (931)
T KOG2044|consen 645 LSAVAKVYPTL 655 (931)
T ss_pred HHHHHhhcccc
Confidence 34444444443
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=54.17 E-value=1.2e+02 Score=29.72 Aligned_cols=46 Identities=15% Similarity=0.325 Sum_probs=27.2
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCC---cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 523 ALGDVVEGMLHFESMSKDYGIVPS---MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~Gi~Pd---~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
..++.+++..+++.|.- +.|. ..++... .+.+.|++++|..+|+++
T Consensus 22 ~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV---LRPNLKELDMFDGW--LLIARGNYDEAARILREL 70 (153)
T ss_pred hcCCHHHHHHHHHHHHH---hCCCccccchhHHH--HHHHcCCHHHHHHHHHhh
Confidence 36667777777766643 3443 2333332 345677777777777777
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=53.84 E-value=90 Score=32.12 Aligned_cols=74 Identities=11% Similarity=0.012 Sum_probs=42.7
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-------CCHhHHHHHHHHHHHcCChH
Q 004114 421 GDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE-------RDLTSWDTMITGFAKNGLGE 493 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~-------~d~~tyn~LI~ay~~~G~~d 493 (773)
.+.|+ +.|++.|-.+...+..-++...-+|...|. ..+.++|+.++-...+ .|...+.+|++.|-+.|+.+
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34443 455555555655555445555555555555 3566666666655542 35666777777777777766
Q ss_pred HHH
Q 004114 494 DAV 496 (773)
Q Consensus 494 eAl 496 (773)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 664
No 318
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=53.66 E-value=3.1e+02 Score=29.31 Aligned_cols=75 Identities=20% Similarity=0.109 Sum_probs=51.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCI--SVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL-SPLRVSTYNGILKMYS 456 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv--~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G-~~pd~~tynaLI~ay~ 456 (773)
-+..-.+.|++++|.+.|+.+...-. +-..-+.-.++-|+-+.++.++|....++.++.- -.|++ -|---|.+++
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs 117 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLS 117 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHH
Confidence 45566788999999999999986531 1234456666777778899999999998888873 33333 4555555554
No 319
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=53.53 E-value=4.3e+02 Score=31.03 Aligned_cols=209 Identities=14% Similarity=0.128 Sum_probs=125.2
Q ss_pred CHHHHHHHHHHHHHCC-CCCCH-HHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 004114 390 KVKEAIEVLGLLEKQC-ISVDL-PTFSQLMQACGDAKA-LEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFS 466 (773)
Q Consensus 390 ~~~eAl~lf~~M~~~G-v~Pd~-~ty~~LL~a~~~~g~-le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~ 466 (773)
.+...+.+|+...+.+ ..++. .-|..+...++.... .+.|..+..+ ++.-+...|-.-+....+... ++.-
T Consensus 336 ~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e----~f~~s~k~~~~kl~~~~~s~s--D~q~ 409 (568)
T KOG2396|consen 336 RILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE----LFRDSGKMWQLKLQVLIESKS--DFQM 409 (568)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH----HhcchHHHHHHHHHHHHhhcc--hhHH
Confidence 4556667777665543 44443 356666555555443 3344444333 345566666555554443321 4444
Q ss_pred HHHHh--------hcCCHhHHHHHH-HHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcCCChHHHHHHHHH
Q 004114 467 VFSNM--------TERDLTSWDTMI-TGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF-IGVFSACSALGDVVEGMLHFES 536 (773)
Q Consensus 467 lf~~M--------~~~d~~tyn~LI-~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty-~~LL~a~~~~G~~deA~~if~~ 536 (773)
+|.+. ..+-..+|++.+ ..+......+..+..+.. -..|+..|+ +.++.-+-..+-..+|..++..
T Consensus 410 ~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s----~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~ 485 (568)
T KOG2396|consen 410 LFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLS----VIGADSVTLKSKYLDWAYESGGYKKARKVYKS 485 (568)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHH----hcCCceeehhHHHHHHHHHhcchHHHHHHHHH
Confidence 44442 233556676666 111222222333333333 345788887 6778888899999999999999
Q ss_pred HHHhcCCCCCcchhhhHHHHH---HhCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHH-HHHcCC
Q 004114 537 MSKDYGIVPSMKHYVSIVDML---GSTGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHGNLELGDRCAEI-VEQLDP 610 (773)
Q Consensus 537 M~~~~Gi~Pd~~tyn~LI~~y---~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~-m~el~p 610 (773)
+..- -+|++..|.-||..= ..+| +.-+.++++.| .+-.|...|.-.+.-=..+|..+.+-.++-. |..+.|
T Consensus 486 l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~ 562 (568)
T KOG2396|consen 486 LQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQG 562 (568)
T ss_pred HHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhCh
Confidence 8654 456778888887643 3344 88889999988 2226888898888877789988887665544 444454
Q ss_pred C
Q 004114 611 S 611 (773)
Q Consensus 611 ~ 611 (773)
.
T Consensus 563 ~ 563 (568)
T KOG2396|consen 563 E 563 (568)
T ss_pred h
Confidence 3
No 320
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.14 E-value=1.7e+02 Score=28.49 Aligned_cols=50 Identities=10% Similarity=0.159 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Q 004114 409 DLPTFSQLMQACGDAKA-LEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~-le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~ 458 (773)
|..+|.+++++.+.... --.+..+|..|++.+.+++..-|..||.++.+-
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 55678899999877766 556778889998888888888899998887764
No 321
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=52.71 E-value=5.9e+02 Score=32.28 Aligned_cols=183 Identities=11% Similarity=0.048 Sum_probs=93.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh-HHHHHHHHHhh
Q 004114 394 AIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSM-DDAFSVFSNMT 472 (773)
Q Consensus 394 Al~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l-~eA~~lf~~M~ 472 (773)
++..+..++. .+|..+-...+.++.+.+..+ +...+..+++ .++..+-...+.++.+.+.. ..+..+...+.
T Consensus 622 ~~~~L~~~L~---D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~ 694 (897)
T PRK13800 622 SVAELAPYLA---DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG 694 (897)
T ss_pred hHHHHHHHhc---CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc
Confidence 3334444443 467777777788888777644 3333334443 34544445556666554322 12222333333
Q ss_pred cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhh
Q 004114 473 ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVS 552 (773)
Q Consensus 473 ~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~ 552 (773)
.+|..+--+.+.++...+..+ +. ++-++.. .+|...=...+.++.+.+..+. +..... .++..+-..
T Consensus 695 ~~d~~VR~~A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~----D~~~~VR~~ 761 (897)
T PRK13800 695 SPDPVVRAAALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT----DENREVRIA 761 (897)
T ss_pred CCCHHHHHHHHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc----CCCHHHHHH
Confidence 456655556666666554322 22 2222222 3455444555666666554322 112222 245566666
Q ss_pred HHHHHHhCCCHHH-HHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 004114 553 IVDMLGSTGYLDE-ALEFIEKMPMEPDVDVWEKLMNLCRMHGNLE 596 (773)
Q Consensus 553 LI~~y~r~G~l~e-A~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e 596 (773)
.+.+++..+..+. +...+..+--.+|..+-.+.+.++...|..+
T Consensus 762 aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~ 806 (897)
T PRK13800 762 VAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPP 806 (897)
T ss_pred HHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc
Confidence 6677776665432 3344444422456666677777777777643
No 322
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=52.60 E-value=1.7e+02 Score=32.28 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 460 SMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 460 ~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
+.+....+++.+.+.+..-|-..+.. ...++.|..-++.|..+ ....+++-.+..+...+
T Consensus 37 ~~~~~e~l~~~Ird~~Map~Ye~lce------------------~~~i~~D~~~l~~m~~~--neeki~eld~~iedaee 96 (393)
T KOG0687|consen 37 KAAAREKLLAAIRDEDMAPLYEYLCE------------------SLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEE 96 (393)
T ss_pred CHHHHHHHHHHHHhcccchHHHHHHh------------------hcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHH
Confidence 44555556666665554444333322 22344455555554433 22233333333333333
Q ss_pred hcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-------CCCCCHHHHHHHHH
Q 004114 540 DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-------PMEPDVDVWEKLMN 587 (773)
Q Consensus 540 ~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-------~~~Pd~~ty~~LI~ 587 (773)
..|-.--...+-...+-||+.|+-+.|++.+.+. |.+-|++.+..=+.
T Consensus 97 nlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlg 151 (393)
T KOG0687|consen 97 NLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLG 151 (393)
T ss_pred hcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Confidence 3232222344555667889999999988888654 66667766554443
No 323
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=52.56 E-value=29 Score=24.00 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555556666666665555544
No 324
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.08 E-value=33 Score=42.10 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=71.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 004114 517 VFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLE 596 (773)
Q Consensus 517 LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e 596 (773)
+|.-+.+.|..+-|+.+.+.-..++ +....+|+++.|++.-.++. |..+|..|...-...|+..
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 4555567777777766554333332 23457899999999988876 6789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCchHHHHcCCchhhhhHHHHHhccccc
Q 004114 597 LGDRCAEIVEQLDPSRLNEKSKAGLVPVNASELAKEKENKKL 638 (773)
Q Consensus 597 ~A~~~~e~m~el~p~~~~~y~~aG~~~~~v~~lmk~~~l~k~ 638 (773)
.|+.+++..+..+.-. -.|...|.. ++++++|+.-++++.
T Consensus 690 IaEm~yQ~~knfekLs-fLYliTgn~-eKL~Km~~iae~r~D 729 (1202)
T KOG0292|consen 690 IAEMCYQRTKNFEKLS-FLYLITGNL-EKLSKMMKIAEIRND 729 (1202)
T ss_pred HHHHHHHHhhhhhhee-EEEEEeCCH-HHHHHHHHHHHhhhh
Confidence 9999998877554211 134444544 566777776665554
No 325
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=50.50 E-value=82 Score=36.32 Aligned_cols=121 Identities=18% Similarity=0.107 Sum_probs=82.6
Q ss_pred HHcCChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHH
Q 004114 487 AKNGLGEDA-VDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDE 565 (773)
Q Consensus 487 ~~~G~~deA-l~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~e 565 (773)
...|+...| ..+|+.++...-.|+.+..-+.|. .+.|+++.+...+....+. +.....+-.+++....+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~--~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIF--SHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHH--HHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHH
Confidence 345666555 456666666656688776666654 4788999988887766544 44566778889999999999999
Q ss_pred HHHHHHhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 566 ALEFIEKM---PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 566 A~~lf~~M---~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
|..+-+.| .++ +..+.......-...|-++++...++.+..+.|..
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 99998888 232 33333333333455677888888888888876654
No 326
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=50.42 E-value=66 Score=33.61 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHh-cCCCCCcchhhhHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD-QIFIGVFSACSALGDVVEGMLHFESMSKD-YGIVPSMKHYVSIVD 555 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~-~Ty~~LL~a~~~~G~~deA~~if~~M~~~-~Gi~Pd~~tyn~LI~ 555 (773)
|-+..|+.+.+.+...+|+.+..+-.+. +|.. .+=..|+..+|-.|++++|..-++-...- -...+-...|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4556788889999999999998887765 4544 45567788899999999997655544210 012223455555554
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=49.95 E-value=27 Score=24.90 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
..+++.|..+|...|++++|+.++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3467778888888888888888887654
No 328
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.79 E-value=1.7e+02 Score=32.49 Aligned_cols=153 Identities=11% Similarity=0.005 Sum_probs=103.6
Q ss_pred hCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH--HHHcCCChHH
Q 004114 457 ECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD--QIFIGVFS--ACSALGDVVE 529 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~--~Ty~~LL~--a~~~~G~~de 529 (773)
-.|+..+|-..++++.+ .|..+|.--=.+|.-+|..+.-...++++.-. ..||. .+|..=|- ++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45888888888888875 38899999999999999999999999888653 22333 34433333 4456788999
Q ss_pred HHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhCCC--C-CC---HHHHHHHHHHHHHcCChhHHHHHH
Q 004114 530 GMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKMPM--E-PD---VDVWEKLMNLCRMHGNLELGDRCA 602 (773)
Q Consensus 530 A~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M~~--~-Pd---~~ty~~LI~a~~~~G~~e~A~~~~ 602 (773)
|++.-++.. .+-+ |...-.++...+-..|++.++.++..+-.- + .+ ..-|-...-.+...+.++.|++++
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 988665442 3333 445555677778889999999999887621 1 11 111222333445668889998888
Q ss_pred H--HHHHcCCCCc
Q 004114 603 E--IVEQLDPSRL 613 (773)
Q Consensus 603 e--~m~el~p~~~ 613 (773)
+ +..+++.++.
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 6 3566666654
No 329
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=49.31 E-value=5.1e+02 Score=30.58 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHH
Q 004114 408 VDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMIT 484 (773)
Q Consensus 408 Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ 484 (773)
.|.....++|..++......-+..+-.+|+..| -+-..|-.++.+|... .-+.-..+++++.+- |++--.-|..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 355566666666766666666777777776654 2445666677777766 445556666655542 4444444444
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHH
Q 004114 485 GFAKNGLGEDAVDIFSQFKQAGLKPDD------QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG 558 (773)
Q Consensus 485 ay~~~G~~deAl~Lf~eM~~~Gv~Pd~------~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~ 558 (773)
-|-+ ++..+|..+|.+.... +-|-. ..|.-|+.. -..+.|....+...+.++.|..--...+.-+-+-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444 6666777777666543 22210 123333221 134455555555555555554444444555555666
Q ss_pred hCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 004114 559 STGYLDEALEFIEKM--PMEPDVDVWEKLMNLC 589 (773)
Q Consensus 559 r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~ 589 (773)
-..++.+|.+++..+ --+.|+..-..+|.-+
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 666777777776654 1123444444444443
No 330
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.21 E-value=1.4e+02 Score=32.99 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=55.5
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC--HhHHH--HHHHHHHHcCChHHHHH
Q 004114 422 DAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERD--LTSWD--TMITGFAKNGLGEDAVD 497 (773)
Q Consensus 422 ~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d--~~tyn--~LI~ay~~~G~~deAl~ 497 (773)
..--+.+|..++++.++.|- .+|+ +......--...+.|.++| +.+|- -|.-+-.+.|+..+|.+
T Consensus 228 Ea~Ti~~AE~l~k~ALka~e----~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAGE----TIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hhhhHHHHHHHHHHHHHHHH----HHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 33457788888888877641 2333 2222222222334455554 33442 22333345789999999
Q ss_pred HHHHHHHCCCCCCHHH---HHHHHHHHHcCCChHHHHHHHHHH
Q 004114 498 IFSQFKQAGLKPDDQI---FIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 498 Lf~eM~~~Gv~Pd~~T---y~~LL~a~~~~G~~deA~~if~~M 537 (773)
.|+++.+. .|-... --.||.+|.....+.+...++.+.
T Consensus 297 ~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 297 IMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99887664 232222 234677777766665555554433
No 331
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.04 E-value=6.4e+02 Score=31.63 Aligned_cols=225 Identities=16% Similarity=0.089 Sum_probs=122.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC---C-----------CCCCHHHHH----HHHHHH--HhcCCHHHHHHHHHHHHHhC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQ---C-----------ISVDLPTFS----QLMQAC--GDAKALEEAKAVHEHVERLL 440 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~---G-----------v~Pd~~ty~----~LL~a~--~~~g~le~A~~l~~~m~k~G 440 (773)
.|.--+++|+++.|-+++++.... + --|+..... .|+.++ ....++.+|..+..++...-
T Consensus 366 AI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l 445 (894)
T COG2909 366 AIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFL 445 (894)
T ss_pred HHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHh
Confidence 344455667777777776665110 0 123333222 233333 35678999999999887763
Q ss_pred CCCCH-------HHHHHHHHHH-HhCCChHHHHHHHHHhhc--------CCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 441 SPLRV-------STYNGILKMY-SECDSMDDAFSVFSNMTE--------RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 441 ~~pd~-------~tynaLI~ay-~k~G~l~eA~~lf~~M~~--------~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
..|+. ..+++|-.-. ...|++++|+++-+.... ..++.+.++..+..-.|++++|..+..+-.+
T Consensus 446 ~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 446 KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 23221 2344442222 235788888888776542 3677888888999999999999998877766
Q ss_pred CCCCCCHHHHH---HHHH--HHHcCCC--hHHHHHHHHHHHHhcCCC-----CCcchhhhHHHHHHhCCCHHHHHHHHH-
Q 004114 505 AGLKPDDQIFI---GVFS--ACSALGD--VVEGMLHFESMSKDYGIV-----PSMKHYVSIVDMLGSTGYLDEALEFIE- 571 (773)
Q Consensus 505 ~Gv~Pd~~Ty~---~LL~--a~~~~G~--~deA~~if~~M~~~~Gi~-----Pd~~tyn~LI~~y~r~G~l~eA~~lf~- 571 (773)
.--+-+..-|. .++. .|-..|. ..+.+..|.......... +-..++..++.++.+ ++.+..-..
T Consensus 526 ~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~ 602 (894)
T COG2909 526 MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARL 602 (894)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhh
Confidence 43333433222 2211 2334452 233344444443321111 112344445555554 333332221
Q ss_pred ---hC-CCCCC--HH--HHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 572 ---KM-PMEPD--VD--VWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 572 ---~M-~~~Pd--~~--ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
-- ...|. .. .+..|+......|+.+.|...++.+..+
T Consensus 603 ~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 603 GIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred cchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 11 11122 22 2235677888899999998888887765
No 332
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=48.22 E-value=4.9e+02 Score=31.41 Aligned_cols=31 Identities=29% Similarity=0.573 Sum_probs=21.7
Q ss_pred cchhhhHHHH-----HHhCCCHHHHHHHHHhCCCCC
Q 004114 547 MKHYVSIVDM-----LGSTGYLDEALEFIEKMPMEP 577 (773)
Q Consensus 547 ~~tyn~LI~~-----y~r~G~l~eA~~lf~~M~~~P 577 (773)
..|+..|++. +...|++++|++.++++++-|
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 4556666554 467899999999999998888
No 333
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.64 E-value=90 Score=27.76 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHH
Q 004114 429 AKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAV 496 (773)
Q Consensus 429 A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl 496 (773)
+.+++..+.+.|+- +......+-.+-...|+.+.|..+++.++ +..-.|..+++++...|..+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 33455555555532 22233333332234566677777777776 66666777777777666655554
No 334
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=47.57 E-value=1.6e+02 Score=31.97 Aligned_cols=85 Identities=9% Similarity=0.082 Sum_probs=43.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh--
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQ--CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE-- 457 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~--Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k-- 457 (773)
|.|++..++|.+++...-+--.. .++|.+.-.++| .|.+.+....+.++-...++.----+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 66777777777766554333222 234443333333 366666666666666665554212223335555555443
Q ss_pred ---CCChHHHHHHH
Q 004114 458 ---CDSMDDAFSVF 468 (773)
Q Consensus 458 ---~G~l~eA~~lf 468 (773)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 34455554444
No 335
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=47.46 E-value=3.8e+02 Score=28.60 Aligned_cols=159 Identities=11% Similarity=0.070 Sum_probs=90.1
Q ss_pred HHcCCHHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCC-----
Q 004114 386 VKEGKVKEAIEVLGLLEKQC--ISVDL------PTFSQLMQACGDAKALEEAKAVHEHVERL--------LSPLR----- 444 (773)
Q Consensus 386 ~~~G~~~eAl~lf~~M~~~G--v~Pd~------~ty~~LL~a~~~~g~le~A~~l~~~m~k~--------G~~pd----- 444 (773)
.+.|+.+.|..++.+....- ..|+. ..|+.-...+.+..+++.|...+++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35677788888887776532 22322 23333333333332777777666655443 12233
Q ss_pred HHHHHHHHHHHHhCCChH---HHHHHHHHhhc--CC-HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMD---DAFSVFSNMTE--RD-LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVF 518 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~---eA~~lf~~M~~--~d-~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL 518 (773)
..+...|+.+|...+..+ +|..+++.+.. ++ ..++-.-|..+.+.++.+++.+.+.+|...-.- ....|..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 356777888888887654 45556666642 33 445555566666689999999999999886321 223444444
Q ss_pred HHH---HcCCChHHHHHHHHHHHHhcCCCCCc
Q 004114 519 SAC---SALGDVVEGMLHFESMSKDYGIVPSM 547 (773)
Q Consensus 519 ~a~---~~~G~~deA~~if~~M~~~~Gi~Pd~ 547 (773)
..+ ..... ..|...++.+... .+.|..
T Consensus 163 ~~i~~l~~~~~-~~a~~~ld~~l~~-r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSP-ELAAFCLDYLLLN-RFKSSE 192 (278)
T ss_pred HHHHHHHhhCc-HHHHHHHHHHHHH-HhCCCh
Confidence 444 44333 3455555554443 344444
No 336
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.30 E-value=2.5e+02 Score=30.61 Aligned_cols=136 Identities=19% Similarity=0.191 Sum_probs=86.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHhcCCHHHHHHHHHH----HHHhCCCCCHHH
Q 004114 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPT-------FSQLMQACGDAKALEEAKAVHEH----VERLLSPLRVST 447 (773)
Q Consensus 379 ~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~t-------y~~LL~a~~~~g~le~A~~l~~~----m~k~G~~pd~~t 447 (773)
.++....++..++++|+.++.+.+..|+..|..+ ..-+...|...|+...-.++... |..-.-+-.+.+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 3455667788899999999999999998777654 44566777777765444333322 222222233456
Q ss_pred HHHHHHHHHhC-CChHHHHHHHHHhhc---C------CHhHHHHHHHHHHHcCChHHHHHHHHH----HHHCCCCCCHHH
Q 004114 448 YNGILKMYSEC-DSMDDAFSVFSNMTE---R------DLTSWDTMITGFAKNGLGEDAVDIFSQ----FKQAGLKPDDQI 513 (773)
Q Consensus 448 ynaLI~ay~k~-G~l~eA~~lf~~M~~---~------d~~tyn~LI~ay~~~G~~deAl~Lf~e----M~~~Gv~Pd~~T 513 (773)
..+||+.+.-. ..+++.+.+.....+ + -...=.-+|..+.+.|.+.+|+.+... +++..-+|+.++
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 66777776543 456777776665542 1 112234688999999999999987654 445555666554
Q ss_pred H
Q 004114 514 F 514 (773)
Q Consensus 514 y 514 (773)
.
T Consensus 167 v 167 (421)
T COG5159 167 V 167 (421)
T ss_pred h
Confidence 4
No 337
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.21 E-value=2.4e+02 Score=33.70 Aligned_cols=130 Identities=11% Similarity=0.003 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
.-+.+++-+-+.|..++|+.+--. +|. -.....+.|+++.|.++..+.. +..-|..|-.+...+++
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D---~d~-----rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTD---PDQ-----RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCC---hhh-----hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhccc
Confidence 456677778888888888776321 111 1223356788999988876543 45678899999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 004114 527 VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAE 603 (773)
Q Consensus 527 ~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e 603 (773)
+..|.+.|.... -|..|+-++...|+-+....+-.... ..-..|....++...|+++++.+++.
T Consensus 682 l~lA~EC~~~a~----------d~~~LlLl~t~~g~~~~l~~la~~~~---~~g~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 682 LPLASECFLRAR----------DLGSLLLLYTSSGNAEGLAVLASLAK---KQGKNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred chhHHHHHHhhc----------chhhhhhhhhhcCChhHHHHHHHHHH---hhcccchHHHHHHHcCCHHHHHHHHH
Confidence 999988876542 24566667777776554333333220 00112233445566787765544433
No 338
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.97 E-value=4.8e+02 Score=31.01 Aligned_cols=85 Identities=19% Similarity=0.124 Sum_probs=48.1
Q ss_pred HHHcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 004114 385 LVKEGKVKEAIEVLGLLEK-------QCISVDLPTFSQLMQACGDAK-----ALEEAKAVHEHVERLLSPLRVSTYNGIL 452 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~-------~Gv~Pd~~ty~~LL~a~~~~g-----~le~A~~l~~~m~k~G~~pd~~tynaLI 452 (773)
+....+++.|+..|..+.+ .| ......-+-.+|.+.. +.+.|+.++....+.|.+ +....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHH
Confidence 5566777777777777765 44 2223444444454432 567788888877777753 443333333
Q ss_pred HHHHh-CCChHHHHHHHHHhhc
Q 004114 453 KMYSE-CDSMDDAFSVFSNMTE 473 (773)
Q Consensus 453 ~ay~k-~G~l~eA~~lf~~M~~ 473 (773)
..... -.++..|..+|.....
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHH
Confidence 33222 2356677777766543
No 339
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=45.56 E-value=5.7e+02 Score=30.06 Aligned_cols=177 Identities=11% Similarity=0.083 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHHh-CCCCC-HHHHHHHHHHHHhCCChH-HHHHHHHHhhcCCHhHHHHHHHHHHHcC-ChH-HHHHHH
Q 004114 425 ALEEAKAVHEHVERL-LSPLR-VSTYNGILKMYSECDSMD-DAFSVFSNMTERDLTSWDTMITGFAKNG-LGE-DAVDIF 499 (773)
Q Consensus 425 ~le~A~~l~~~m~k~-G~~pd-~~tynaLI~ay~k~G~l~-eA~~lf~~M~~~d~~tyn~LI~ay~~~G-~~d-eAl~Lf 499 (773)
.+...+.+++...+. +..++ ..-|..+.-++++...-. -|..+-.+.-.-+...|-.-+....+.. ++. .-.++|
T Consensus 336 ~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~ 415 (568)
T KOG2396|consen 336 RILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELF 415 (568)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 455666666655554 33333 446777777777765543 3444444555556666655555444221 211 122233
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCC-hHHHH--HHHHHHHHhcCCCCCcchh-hhHHHHHHhCCCHHHHHHHHHhCCC
Q 004114 500 SQFKQAGLKPDDQIFIGVFSACSALGD-VVEGM--LHFESMSKDYGIVPSMKHY-VSIVDMLGSTGYLDEALEFIEKMPM 575 (773)
Q Consensus 500 ~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~-~deA~--~if~~M~~~~Gi~Pd~~ty-n~LI~~y~r~G~l~eA~~lf~~M~~ 575 (773)
...+..=..+-...+++.. .++ ++... .++....+ -..|+..+. +.+++.+-+.|-..+|..++..+..
T Consensus 416 n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~ 488 (568)
T KOG2396|consen 416 NHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE 488 (568)
T ss_pred HHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 3333322233333444333 222 33221 22222222 234554443 4688888899999999999888721
Q ss_pred --CCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHHc
Q 004114 576 --EPDVDVWEKLMNLCR--MHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 576 --~Pd~~ty~~LI~a~~--~~G~~e~A~~~~e~m~el 608 (773)
.|..+.|.-+|..=. ..-++..+.++++.+..-
T Consensus 489 lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~ 525 (568)
T KOG2396|consen 489 LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE 525 (568)
T ss_pred CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH
Confidence 356777877775321 122255667777766543
No 340
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.09 E-value=1.4e+02 Score=27.40 Aligned_cols=27 Identities=11% Similarity=0.458 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
-|..|+.-|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588889999999999999999988876
No 341
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=44.91 E-value=5.6e+02 Score=29.80 Aligned_cols=250 Identities=10% Similarity=0.136 Sum_probs=127.6
Q ss_pred HHHHHhhchHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCChhHHHH-------hhhhccHHHHHHHH--HHcCCHH
Q 004114 327 SRRQYQQNPNEGQYQSYSGN-IQ----NGMMASQVLNNCKHEDDFAEASR-------SSQNNGTLEQLDGL--VKEGKVK 392 (773)
Q Consensus 327 a~~~f~~~~~~~~~m~~~gl-~p----d~~~~n~LI~~y~k~g~~~~A~~-------v~~~~~~~~LI~a~--~~~G~~~ 392 (773)
..+.|+++..+...+.+.-- .| .....+.+|++|--. +++.... ...-..+..+..++ -+.+.+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 44455555555554443221 11 123455677776542 2222222 11222222344443 3778899
Q ss_pred HHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CCHHHHHHHHHH
Q 004114 393 EAIEVLGLLEKQ--CISV------------DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSP----LRVSTYNGILKM 454 (773)
Q Consensus 393 eAl~lf~~M~~~--Gv~P------------d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~----pd~~tynaLI~a 454 (773)
+|++.|..-... +-.| |-+-=+..+.++...|.+.+|+.+++.|+..-++ .++.+|+.++-+
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 999888776554 3222 2223345677788999999999999998876444 789999998888
Q ss_pred HHhCCChHH---------------HHHHHHHhhcCCHhHH----------HHHHHHHHHc--CChHHHHHHHHHHHHCCC
Q 004114 455 YSECDSMDD---------------AFSVFSNMTERDLTSW----------DTMITGFAKN--GLGEDAVDIFSQFKQAGL 507 (773)
Q Consensus 455 y~k~G~l~e---------------A~~lf~~M~~~d~~ty----------n~LI~ay~~~--G~~deAl~Lf~eM~~~Gv 507 (773)
+++.=-++. +.-...+|...|...| ..++....-. .+..--+.+++.-...-+
T Consensus 177 lsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv 256 (549)
T PF07079_consen 177 LSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYV 256 (549)
T ss_pred HhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhcc
Confidence 887532221 1111122221122111 1111111111 011111222222233345
Q ss_pred CCCHHH-HHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC----CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHH
Q 004114 508 KPDDQI-FIGVFSACSALGDVVEGMLHFESMSKDYGIVP----SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVD 580 (773)
Q Consensus 508 ~Pd~~T-y~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P----d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ 580 (773)
.|+... ...|+..... +.+++..+-+.+... .+.+ =+.++..++....+.+...+|.+.+.-+ -+.|...
T Consensus 257 ~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~-~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~s 332 (549)
T PF07079_consen 257 HPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS-KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRIS 332 (549)
T ss_pred CCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcch
Confidence 565432 2334444433 445554444433221 2221 2457778888888999999998888766 3345544
No 342
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=44.87 E-value=4.6e+02 Score=28.76 Aligned_cols=77 Identities=10% Similarity=0.040 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh---CCChHHHHHHH
Q 004114 392 KEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE---CDSMDDAFSVF 468 (773)
Q Consensus 392 ~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k---~G~l~eA~~lf 468 (773)
+.-+.++++.++.. .-+.......|..+.+.-+.+...+.++.++... +-+...|-..|+.... .-.+++...+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44566777766662 2345556667777777777777777777777763 2256666666665443 22355555555
Q ss_pred HH
Q 004114 469 SN 470 (773)
Q Consensus 469 ~~ 470 (773)
.+
T Consensus 126 ~~ 127 (321)
T PF08424_consen 126 EK 127 (321)
T ss_pred HH
Confidence 44
No 343
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.77 E-value=5.2e+02 Score=29.37 Aligned_cols=115 Identities=12% Similarity=0.088 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHH---CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 004114 392 KEAIEVLGLLEK---QCI-SVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSV 467 (773)
Q Consensus 392 ~eAl~lf~~M~~---~Gv-~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~l 467 (773)
++...++.+... .|+ ..+......++..+ .|++..++.+++.+...+...+. +....+
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHH
Confidence 444555554432 243 45555555554443 67788887777766543212222 222222
Q ss_pred HHHhh---cCCHhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 004114 468 FSNMT---ERDLTSWDTMITGFAK---NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL 524 (773)
Q Consensus 468 f~~M~---~~d~~tyn~LI~ay~~---~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~ 524 (773)
+.... .++...+.-+|+++.+ ..+.+.|+..+.+|.+.|..|..+.=..++.++-..
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 22211 2222334455666655 478899999999999998888765544444444333
No 344
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=44.40 E-value=2.7e+02 Score=30.63 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=38.7
Q ss_pred HcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 004114 522 SALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A 598 (773)
.....+++...+..+-.++.. -|+..+...+=++...+..|.+-.++..+--+ ....+|.-|+.++|..|+.|.+
T Consensus 266 s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qal-rhlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQAL-RHLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHH-HHHHhhhHHHHHHhcCChHHHH
Confidence 344455555544444334423 35544333333333334444444444333211 1355888899999999987754
No 345
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.32 E-value=4.2e+02 Score=28.19 Aligned_cols=153 Identities=18% Similarity=0.134 Sum_probs=69.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh
Q 004114 386 VKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKAL----EEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSM 461 (773)
Q Consensus 386 ~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~l----e~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l 461 (773)
++.+++++|++++..--. .+.+.+.. |.|.-+.+-+.+.+.+++...-..|+..+.....-
T Consensus 1 v~~kky~eAidLL~~Ga~---------------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGAL---------------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HHTT-HHHHHHHHHHHHH---------------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred CccccHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Confidence 357788899888755321 12233333 33334444444456666665555666655554322
Q ss_pred H-HHHHHHHHhh-------c--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 004114 462 D-DAFSVFSNMT-------E--RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM 531 (773)
Q Consensus 462 ~-eA~~lf~~M~-------~--~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~ 531 (773)
+ +-.++.+++. . -|......+...|.+.|++.+|..-|- .|-.|+...+..++......|...++-
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl----~~~~~~~~~~~~ll~~~~~~~~~~e~d 141 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL----LGTDPSAFAYVMLLEEWSTKGYPSEAD 141 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH----TS-HHHHHHHHHHHHHHHHHTSS--HH
T ss_pred cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH----hcCChhHHHHHHHHHHHHHhcCCcchh
Confidence 1 1122222221 1 155666677777778887777776652 122233333333444444444433332
Q ss_pred HHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 532 LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 532 ~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
.++-+ .|-.|.-.+++..|.++++..
T Consensus 142 lfi~R----------------aVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 142 LFIAR----------------AVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp HHHHH----------------HHHHHHHTTBHHHHHHHHHHH
T ss_pred HHHHH----------------HHHHHHHhcCHHHHHHHHHHH
Confidence 22111 222355567777777665443
No 346
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=43.90 E-value=4.4e+02 Score=30.54 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=67.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC-
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD- 459 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G- 459 (773)
++.-|+..|+..+|.+..+++... .-.+...=.+|+.+... ..|..+.-.+.+.+...+...-+-+.+++.|.+
T Consensus 220 ~l~eyv~~getrea~rciR~L~vs-ffhhe~vkralv~ame~----~~ae~l~l~llke~~e~glissSq~~kGfsr~~~ 294 (645)
T KOG0403|consen 220 NLIEYVEIGETREACRCIRELGVS-FFHHEGVKRALVDAMED----ALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGG 294 (645)
T ss_pred HHHHHHHcccHHHHHHHHHHhCCC-chhhHHHHHHHHHHHhh----hhcccceeccchhhhhhcchhhhccccCchhhcc
Confidence 677888899988888877766332 11122222333333322 222222222223333334444455666666654
Q ss_pred -------ChHHHHHHHHHhhcCCHh-HH---HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH
Q 004114 460 -------SMDDAFSVFSNMTERDLT-SW---DTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVV 528 (773)
Q Consensus 460 -------~l~eA~~lf~~M~~~d~~-ty---n~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~d 528 (773)
++..|...|+.+..+++. -| +++-..-...|+.+. +..|+ .+...+|.-|...|+..
T Consensus 295 slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fk-----------k~~~~IIqEYFlsgDt~ 362 (645)
T KOG0403|consen 295 SLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFK-----------KDLTPIIQEYFLSGDTP 362 (645)
T ss_pred ccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHH-----------HhhHHHHHHHHhcCChH
Confidence 356777788777533110 01 111111122333222 22222 24456677777777777
Q ss_pred HHHHHHHHH
Q 004114 529 EGMLHFESM 537 (773)
Q Consensus 529 eA~~if~~M 537 (773)
+..+.++.+
T Consensus 363 Evi~~L~DL 371 (645)
T KOG0403|consen 363 EVIRSLRDL 371 (645)
T ss_pred HHHHHHHHc
Confidence 766655543
No 347
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=43.49 E-value=1.8e+02 Score=35.70 Aligned_cols=9 Identities=11% Similarity=0.206 Sum_probs=5.0
Q ss_pred CCCCCCCcc
Q 004114 86 GLNPNGGFT 94 (773)
Q Consensus 86 ~~~~~~~~~ 94 (773)
..+|.+..+
T Consensus 762 ~~~p~~~lk 770 (931)
T KOG2044|consen 762 AKEPEKVLK 770 (931)
T ss_pred CCCCccccC
Confidence 445666555
No 348
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.69 E-value=1.3e+02 Score=36.75 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=23.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 585 LMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 585 LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
.+.+-.-+.+..+|..+.+.|.+++|...
T Consensus 372 y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 372 YFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred hhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 35566667888899999999999988764
No 349
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=41.99 E-value=4.7e+02 Score=28.13 Aligned_cols=60 Identities=8% Similarity=0.157 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC---CcchhhhHHHHHHhCCCHHHHHHHHHh
Q 004114 512 QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP---SMKHYVSIVDMLGSTGYLDEALEFIEK 572 (773)
Q Consensus 512 ~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P---d~~tyn~LI~~y~r~G~l~eA~~lf~~ 572 (773)
.++..+...|.+.|.++.|...+..+... .... +..+.-.-++.+-..|+-.+|...+++
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35555566666666666666555555331 1100 223333344555555555555555443
No 350
>PRK09687 putative lyase; Provisional
Probab=41.72 E-value=4.8e+02 Score=28.10 Aligned_cols=213 Identities=7% Similarity=-0.061 Sum_probs=136.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKAL----EEAKAVHEHVERLLSPLRVSTYNGILKMYS 456 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~l----e~A~~l~~~m~k~G~~pd~~tynaLI~ay~ 456 (773)
.+.++...|. .+++.++..+... +|...=...+.+++..|+. +++..++..+... .++..+-...+.+++
T Consensus 43 A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG 116 (280)
T PRK09687 43 SIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATG 116 (280)
T ss_pred HHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHh
Confidence 5666666664 4455555555443 4666677778888888863 4566666665332 467777777777777
Q ss_pred hCCC-----hHHHHHHHHH-hhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-ChHH
Q 004114 457 ECDS-----MDDAFSVFSN-MTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALG-DVVE 529 (773)
Q Consensus 457 k~G~-----l~eA~~lf~~-M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G-~~de 529 (773)
..+. ...+...+.. +..++..+--..+.++++.+. .+|+..+-.+... +|...=...+.+++..+ .-..
T Consensus 117 ~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 117 HRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred cccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHH
Confidence 6542 2334444433 335566777778888888876 5677777777763 55555555666666653 2345
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 530 GMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 530 A~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+...+..+..+ ++..+-..-+.++++.|...-.-.+++.+. .++ .....+.|+...|.. .|..++..+.+..
T Consensus 193 ~~~~L~~~L~D----~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~ 264 (280)
T PRK09687 193 IREAFVAMLQD----KNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKF 264 (280)
T ss_pred HHHHHHHHhcC----CChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC
Confidence 66666555544 577788889999999999654445555554 234 344678888888884 5777777776655
Q ss_pred CC
Q 004114 610 PS 611 (773)
Q Consensus 610 p~ 611 (773)
|+
T Consensus 265 ~d 266 (280)
T PRK09687 265 DD 266 (280)
T ss_pred CC
Confidence 54
No 351
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=41.51 E-value=6.7e+02 Score=29.71 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVER 438 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k 438 (773)
...+..++++.+..|--.....+.+.+..
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 34555566666666654444444444443
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=41.04 E-value=1.5e+02 Score=30.60 Aligned_cols=72 Identities=8% Similarity=-0.031 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhc--CCCCCcchhhhHHHHHHhCCCHHHH
Q 004114 494 DAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDY--GIVPSMKHYVSIVDMLGSTGYLDEA 566 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~--Gi~Pd~~tyn~LI~~y~r~G~l~eA 566 (773)
+|...|-+|...+..-|......|..-| -..+.+++..++....+-+ +-.+++..+.+|+..|-+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444444444444332322222222222 2344444444444433221 1123344444444444444444444
No 353
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.80 E-value=4.9e+02 Score=27.93 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=10.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQ 501 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~e 501 (773)
|+--+..|..+|.++-|-..+++
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHH
Confidence 34444455555555444444433
No 354
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.73 E-value=4.4e+02 Score=27.44 Aligned_cols=106 Identities=22% Similarity=0.247 Sum_probs=55.4
Q ss_pred HHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHH
Q 004114 478 SWDTMITGFAK--NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIV 554 (773)
Q Consensus 478 tyn~LI~ay~~--~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI 554 (773)
.|-.+|.||.. ++++++|++++-+ -.+.|+-. .-+|.++...|+.+.|..++..+ +..+ +...-..++
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~----~p~l~s~~~~~~~~ 148 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSH---PSLIPWFP--DKILQALLRRGDPKLALRYLRAV----GPPLSSPEALTLYF 148 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCC---CCCCcccH--HHHHHHHHHCCChhHHHHHHHhc----CCCCCCHHHHHHHH
Confidence 34555555554 4556666666522 11222211 13566666677777777777654 1111 112222333
Q ss_pred HHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004114 555 DMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHG 593 (773)
Q Consensus 555 ~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G 593 (773)
.+ ..++.+.||..+-+...-.-....|..++..|....
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 33 556788888887777642111346677777666444
No 355
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.50 E-value=5.1e+02 Score=27.74 Aligned_cols=107 Identities=7% Similarity=-0.019 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-CCHhHHHHHHHHHHHcCChHHHHHHHH
Q 004114 426 LEEAKAVHEHVERLLS----PLRVSTYNGILKMYSECDSMDDAFSVFSNMTE-RDLTSWDTMITGFAKNGLGEDAVDIFS 500 (773)
Q Consensus 426 le~A~~l~~~m~k~G~----~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~-~d~~tyn~LI~ay~~~G~~deAl~Lf~ 500 (773)
.+.|.+.|..+...+. .++......++....+.|..++-..+++.... ++......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 6778888888777422 45666667778888888887776677766664 466778888899888888888888888
Q ss_pred HHHHCC-CCCCHHHHHHHHHHHHcCCCh--HHHHHHH
Q 004114 501 QFKQAG-LKPDDQIFIGVFSACSALGDV--VEGMLHF 534 (773)
Q Consensus 501 eM~~~G-v~Pd~~Ty~~LL~a~~~~G~~--deA~~if 534 (773)
...... +++.. ...++.++...+.. +.+..++
T Consensus 226 ~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 226 LLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFF 260 (324)
T ss_dssp HHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHH
T ss_pred HHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHH
Confidence 887754 55444 23334444433333 4454443
No 356
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.39 E-value=4.3e+02 Score=28.13 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=7.7
Q ss_pred CChHHHHHHHHHHHHC
Q 004114 490 GLGEDAVDIFSQFKQA 505 (773)
Q Consensus 490 G~~deAl~Lf~eM~~~ 505 (773)
+++.+|+++|++....
T Consensus 168 eqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555554443
No 357
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.28 E-value=6.2e+02 Score=30.10 Aligned_cols=145 Identities=12% Similarity=0.056 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH--HHH-HHhcCCHHHHHHHHHHHHH-------hCCCCCHHHHHHHHHHHHhCC-
Q 004114 391 VKEAIEVLGLLEKQCISVDLPTFSQL--MQA-CGDAKALEEAKAVHEHVER-------LLSPLRVSTYNGILKMYSECD- 459 (773)
Q Consensus 391 ~~eAl~lf~~M~~~Gv~Pd~~ty~~L--L~a-~~~~g~le~A~~l~~~m~k-------~G~~pd~~tynaLI~ay~k~G- 459 (773)
..+|++.++.....|..-.. ....+ +.+ .+...+++.|...+..+.+ .|. .....-|-.+|.+-.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~-~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQ-YALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcchHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCC
Confidence 45566666666665522111 11111 112 4456688899988888877 452 224455666666633
Q ss_pred ----ChHHHHHHHHHhhc---CCHhHHHHHHHHHHH-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--cCCChHH
Q 004114 460 ----SMDDAFSVFSNMTE---RDLTSWDTMITGFAK-NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS--ALGDVVE 529 (773)
Q Consensus 460 ----~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~-~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~--~~G~~de 529 (773)
+.+.|+.+|....+ |+....-..+.-... ..+...|.++|..--+.|.. +..-+.+++-.+. ...+...
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 55667777765543 222221111111111 23456788888777776643 2222222222222 2235555
Q ss_pred HHHHHHHHHHh
Q 004114 530 GMLHFESMSKD 540 (773)
Q Consensus 530 A~~if~~M~~~ 540 (773)
|..++.+..++
T Consensus 383 A~~~~k~aA~~ 393 (552)
T KOG1550|consen 383 AFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHHHc
Confidence 66666555443
No 358
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=38.07 E-value=51 Score=21.82 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=11.2
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q 004114 450 GILKMYSECDSMDDAFSVFS 469 (773)
Q Consensus 450 aLI~ay~k~G~l~eA~~lf~ 469 (773)
.|..++...|++++|+.+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44555555666666655554
No 359
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=37.95 E-value=2.5e+02 Score=30.47 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=47.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHH----
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG---- 558 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~---- 558 (773)
|.+++..+++.+++...-+--+.--+.-....-.-|-.|++.+....+.++-..-..+-+ --+..-|.++++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHHHH
Confidence 556666667766666554433321111223333334456677777766666555544311 112334666666554
Q ss_pred -hCCCHHHHHHHHH
Q 004114 559 -STGYLDEALEFIE 571 (773)
Q Consensus 559 -r~G~l~eA~~lf~ 571 (773)
-.|.+++|++++.
T Consensus 169 lPLG~~~eAeelv~ 182 (309)
T PF07163_consen 169 LPLGHFSEAEELVV 182 (309)
T ss_pred hccccHHHHHHHHh
Confidence 4688888888873
No 360
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=37.60 E-value=4.8e+02 Score=26.92 Aligned_cols=174 Identities=9% Similarity=0.016 Sum_probs=97.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHhCCChHHHHHHHHHhhcCC
Q 004114 404 QCISVDLPTFSQLMQACGDAK----ALEEAKAVHEHVERLLSPLRVS----TYNGILKMYSECDSMDDAFSVFSNMTERD 475 (773)
Q Consensus 404 ~Gv~Pd~~ty~~LL~a~~~~g----~le~A~~l~~~m~k~G~~pd~~----tynaLI~ay~k~G~l~eA~~lf~~M~~~d 475 (773)
.|+.+|...++.++..+.+.. .++.+..+=.....+++..+.. ..-.=|..|-+.||+.+-=.+|-.+.
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~--- 78 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK--- 78 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH---
Confidence 578889999999888887654 4555666655555555554332 22223344555555555544443332
Q ss_pred HhHHHHHHHHHHHcCChH-----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchh
Q 004114 476 LTSWDTMITGFAKNGLGE-----DAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHY 550 (773)
Q Consensus 476 ~~tyn~LI~ay~~~G~~d-----eAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~ty 550 (773)
.|+-+.+++. -|+.|.++-++ +|. +-|-.+..+-++.-.-+++.+.+- .+ +-
T Consensus 79 --------~gce~~~dlq~~~~~va~~Ltkd~Kd---k~~-vPFceFAetV~k~~q~~e~dK~~L---GR--------iG 135 (233)
T PF14669_consen 79 --------MGCEKFADLQRFCACVAEALTKDSKD---KPG-VPFCEFAETVCKDPQNDEVDKTLL---GR--------IG 135 (233)
T ss_pred --------hhcCCHHHHHHHHHHHHHHHHhcccc---cCC-CCHHHHHHHHhcCCccchhhhhhh---hH--------HH
Confidence 1111111111 13334444333 222 236666666666555555443321 11 22
Q ss_pred hhHHHHHHhCCCHHHHHHHHHhC-----------C------CCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 004114 551 VSIVDMLGSTGYLDEALEFIEKM-----------P------MEPDVDVWEKLMNLCRMHGNLELGDRCAE 603 (773)
Q Consensus 551 n~LI~~y~r~G~l~eA~~lf~~M-----------~------~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e 603 (773)
-+++-.|-+.-++.+..++++.| | ..+--.+-+.....|.+.|.+|-|..+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 35677788888899998888877 1 12334456677778888898888877766
No 361
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=37.60 E-value=45 Score=23.73 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHH
Q 004114 444 RVSTYNGILKMYSECDSMDDAF 465 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~l~eA~ 465 (773)
+..+|+.|-..|...|+.++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3445555555555555555543
No 362
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=37.36 E-value=69 Score=21.74 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
|..+-..|...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444445555555555555554443
No 363
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=36.85 E-value=1.6e+02 Score=27.14 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=30.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 484 TGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 484 ~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
+.+...|++++|+.+.+.+ +-||...+..|-. .+.|..+++..-+.+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 3456677777777776655 4677777766543 256666665555555543
No 364
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.10 E-value=1e+02 Score=23.91 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=22.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQ 418 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~ 418 (773)
++....+.|-..++..++++|.+.|+..+...|..++.
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34444556666666666666666666666666655554
No 365
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=36.09 E-value=8.4e+02 Score=29.28 Aligned_cols=53 Identities=17% Similarity=0.121 Sum_probs=26.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CC-----CHHHHHHHHHHHH--hcCCHHHHHHHHH
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCI-SV-----DLPTFSQLMQACG--DAKALEEAKAVHE 434 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv-~P-----d~~ty~~LL~a~~--~~g~le~A~~l~~ 434 (773)
+-..+-.+++..|...+.+|...-- .| ....+...+.|.. ..|+++.|+..|.
T Consensus 368 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 368 IWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3444455667777777777664311 11 1122222333222 3466777777775
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=36.06 E-value=1.9e+02 Score=30.32 Aligned_cols=52 Identities=10% Similarity=0.176 Sum_probs=24.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 004114 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFS 469 (773)
Q Consensus 417 L~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~ 469 (773)
++.+.+.+.+.+|+.+..+-++.. +.|..+-..|++.||-.|++++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 334444445555555544444432 2233334445555555555555554443
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=35.59 E-value=70 Score=19.91 Aligned_cols=30 Identities=23% Similarity=0.161 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 004114 581 VWEKLMNLCRMHGNLELGDRCAEIVEQLDP 610 (773)
Q Consensus 581 ty~~LI~a~~~~G~~e~A~~~~e~m~el~p 610 (773)
+|..+...+...++++.|...++...++.|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 445555666667777777777666665554
No 368
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=35.15 E-value=8.5e+02 Score=29.11 Aligned_cols=23 Identities=13% Similarity=-0.154 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASR 371 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~ 371 (773)
+..+|..-++.--+.|+.+.+.-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~ 318 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFI 318 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHH
Confidence 44455555555556666555554
No 369
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=34.47 E-value=79 Score=35.06 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=24.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHH
Q 004114 485 GFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGM 531 (773)
Q Consensus 485 ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~ 531 (773)
-|.+.|++++|+..|..-.. +.| +.+++..-..||.+...+..|+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHH
Confidence 45666666666666654433 334 5556655555665555554443
No 370
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=34.15 E-value=7e+02 Score=27.83 Aligned_cols=132 Identities=15% Similarity=0.223 Sum_probs=75.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 004114 449 NGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGED-AVDIFSQFKQAGLKPDDQIFIGVFSACSALGDV 527 (773)
Q Consensus 449 naLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~de-Al~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~ 527 (773)
--+-|.+++.++.+.+..+-+.+..-......+|..++-...-.++ +..+++.+... ||..+...+|+|.+.....
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPAS 246 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCch
Confidence 3467888888888777777777765444555566666655544443 34444444444 8999999999999887776
Q ss_pred HHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCC----CHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004114 528 VEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG----YLDEALEFIEKMPMEPDVDVWEKLMN 587 (773)
Q Consensus 528 deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G----~l~eA~~lf~~M~~~Pd~~ty~~LI~ 587 (773)
......+..+..+ +...+-..|+..-+|+= +-+.+..+++.+-..+|...++.++.
T Consensus 247 ~~~~~~i~~~L~~----~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfa 306 (340)
T PF12069_consen 247 DLVAILIDALLQS----PRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFA 306 (340)
T ss_pred hHHHHHHHHHhcC----cccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6666555555444 22223334555444432 23334444444432333444444433
No 371
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=34.02 E-value=7.6e+02 Score=28.17 Aligned_cols=194 Identities=12% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHH--HHHHHCCCCCCHHHHHHHHHH
Q 004114 342 SYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVL--GLLEKQCISVDLPTFSQLMQA 419 (773)
Q Consensus 342 ~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf--~~M~~~Gv~Pd~~ty~~LL~a 419 (773)
..+....+..+...++..|...++|+..-+. +..-.-+.|..+.|+.-+ .-|.-..-.||..|--.||..
T Consensus 44 ~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~--------i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~t 115 (439)
T KOG1498|consen 44 LASDMASNTKVLEEIMKLCFSAKDWDLLNEQ--------IRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIET 115 (439)
T ss_pred HHhhHHHHHHHHHHHHHHHhccccHHHHHHH--------HHHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHH------------HHHHH
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTM------------ITGFA 487 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~L------------I~ay~ 487 (773)
+ +.-.+=++|-+..+.-+. ..|.+-+-.+|++++|..++.+.+ +.||.+| +..|.
T Consensus 116 L----r~VtegkIyvEvERarlT------k~L~~ike~~Gdi~~Aa~il~el~---VETygsm~~~ekV~fiLEQmrKOG 182 (439)
T KOG1498|consen 116 L----RTVTEGKIYVEVERARLT------KMLAKIKEEQGDIAEAADILCELQ---VETYGSMEKSEKVAFILEQMRLCL 182 (439)
T ss_pred H----HHhhcCceEEeehHHHHH------HHHHHHHHHcCCHHHHHHHHHhcc---hhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHH------HHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHH
Q 004114 488 KNGLGEDAVDIFSQFKQAGLKPDDQI------FIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDM 556 (773)
Q Consensus 488 ~~G~~deAl~Lf~eM~~~Gv~Pd~~T------y~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~ 556 (773)
..+++-.|--+-+++...=+.-+.+. |..++....+.+.+=.+.++|......-.++-|..-|.-.+..
T Consensus 183 ~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~ 257 (439)
T KOG1498|consen 183 LRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRS 257 (439)
T ss_pred HhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhh
No 372
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=34.01 E-value=1.7e+02 Score=28.09 Aligned_cols=71 Identities=14% Similarity=0.290 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 494 DAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
|..+-+..+....+.|+....-..|.||.+..++..|.++|+.++-+.| +....|-.++ ++...+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH---------HHHHHHHHHh
Confidence 4444555556667899999999999999999999999999998866533 4444565555 4566777777
Q ss_pred CC
Q 004114 574 PM 575 (773)
Q Consensus 574 ~~ 575 (773)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 64
No 373
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.52 E-value=7.2e+02 Score=28.09 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=76.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEK-----QC-ISVDLPTFSQLMQ---ACGDAKALEEAKAVHEHVERLLSPLRVSTYNGI 451 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~-----~G-v~Pd~~ty~~LL~---a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaL 451 (773)
++..+.+.+++.-++..++.-.- .+ +.|..+ +.-+.. .|....+++.|+-++...+- .|...+-...
T Consensus 146 l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~f-L~Y~yYgg~iciglk~fe~Al~~~e~~v~---~Pa~~vs~~h 221 (422)
T KOG2582|consen 146 LLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYF-LLYLYYGGMICIGLKRFERALYLLEICVT---TPAMAVSHIH 221 (422)
T ss_pred HHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHH-HHHHHhcceeeeccccHHHHHHHHHHHHh---cchhHHHHHH
Confidence 56666677776666555433221 11 222211 111111 13456789999998887765 2444444455
Q ss_pred HHHHHh--------CCCh--------HHHHHHHHHhhcC----------CHhH-HHHHHH----HHHHcCChHHHHHHHH
Q 004114 452 LKMYSE--------CDSM--------DDAFSVFSNMTER----------DLTS-WDTMIT----GFAKNGLGEDAVDIFS 500 (773)
Q Consensus 452 I~ay~k--------~G~l--------~eA~~lf~~M~~~----------d~~t-yn~LI~----ay~~~G~~deAl~Lf~ 500 (773)
+++|-| .|++ ..|.+.|+-|..| +..+ ..++|. .+.+-+...-|..++.
T Consensus 222 lEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~ 301 (422)
T KOG2582|consen 222 LEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQAVS 301 (422)
T ss_pred HHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 555543 4554 4556666666522 2212 344443 2334455555555566
Q ss_pred HHHHCCCCCCHHHHHHHHH----HHHcCCChHHHHHHHHHHHHh
Q 004114 501 QFKQAGLKPDDQIFIGVFS----ACSALGDVVEGMLHFESMSKD 540 (773)
Q Consensus 501 eM~~~Gv~Pd~~Ty~~LL~----a~~~~G~~deA~~if~~M~~~ 540 (773)
.|.+..++--..||.+|=- .....+..++|.++.-.|.++
T Consensus 302 sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~ 345 (422)
T KOG2582|consen 302 SLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIED 345 (422)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 6655555544555555422 122334445555544455443
No 374
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=32.73 E-value=7e+02 Score=27.42 Aligned_cols=68 Identities=13% Similarity=0.002 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHH--------HHHHHhCCCCCCHHHH
Q 004114 513 IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEA--------LEFIEKMPMEPDVDVW 582 (773)
Q Consensus 513 Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA--------~~lf~~M~~~Pd~~ty 582 (773)
++..+.++|...|.+.+|..+......- -+.+...+-.|+..|+..|+--.| ..++.++|+.-|-.++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl--dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL--DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 5566678899999999999988877542 234667788999999999984444 4444455766554443
No 375
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.59 E-value=6.4e+02 Score=26.91 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=37.4
Q ss_pred HHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004114 466 SVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA 523 (773)
Q Consensus 466 ~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~ 523 (773)
.+|+-..+|.....-.|+..|. .+++++|+++++++-+.|+.|... .+++.++|-.
T Consensus 229 nVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K~ 284 (333)
T KOG0991|consen 229 NVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVVKN 284 (333)
T ss_pred hhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHh
Confidence 3444444566666666776655 457899999999999989888654 4555555533
No 376
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=32.51 E-value=9.4e+02 Score=28.83 Aligned_cols=180 Identities=14% Similarity=0.137 Sum_probs=96.8
Q ss_pred HHHHHHHHHHH-CCCCCC--HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHhCCChHH
Q 004114 393 EAIEVLGLLEK-QCISVD--LPTFSQLMQACG-DAKALEEAKAVHEHVERLLSPLRV-----STYNGILKMYSECDSMDD 463 (773)
Q Consensus 393 eAl~lf~~M~~-~Gv~Pd--~~ty~~LL~a~~-~~g~le~A~~l~~~m~k~G~~pd~-----~tynaLI~ay~k~G~l~e 463 (773)
.|+..++-+.+ ..+.|. ..++--+...+. ...++++|+..+.+.+...-.++. .+...++..|.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34555555542 223332 234444444444 556788888888766544222221 22334567777766655
Q ss_pred HHHHHHHhhcC----CHhH----HHHH-HHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHcC--CChHH
Q 004114 464 AFSVFSNMTER----DLTS----WDTM-ITGFAKNGLGEDAVDIFSQFKQAG---LKPDDQIFIGVFSACSAL--GDVVE 529 (773)
Q Consensus 464 A~~lf~~M~~~----d~~t----yn~L-I~ay~~~G~~deAl~Lf~eM~~~G---v~Pd~~Ty~~LL~a~~~~--G~~de 529 (773)
|....++..+. .... |.-+ +.-+...++...|++.++.+...- ..|-..++..++.++... +..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 77777765531 1112 2222 222223378888998888876532 334445556666666543 44556
Q ss_pred HHHHHHHHHHhc-CC-------CCCcchhhhHHHHHH--hCCCHHHHHHHHHhC
Q 004114 530 GMLHFESMSKDY-GI-------VPSMKHYVSIVDMLG--STGYLDEALEFIEKM 573 (773)
Q Consensus 530 A~~if~~M~~~~-Gi-------~Pd~~tyn~LI~~y~--r~G~l~eA~~lf~~M 573 (773)
+.+....+.... ++ .|-..+|..|++.++ ..|+++.+.+.++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666665553210 11 234567777777665 567766666665544
No 377
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=32.48 E-value=79 Score=21.20 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=20.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 584 KLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 584 ~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
.+..++.+.|+.+.|...++.+.+..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455666778888888888888777765
No 378
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=32.15 E-value=2.3e+02 Score=32.89 Aligned_cols=114 Identities=7% Similarity=0.090 Sum_probs=71.4
Q ss_pred hcCCHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHH
Q 004114 422 DAKALEEAK-AVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVD 497 (773)
Q Consensus 422 ~~g~le~A~-~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~ 497 (773)
..|++-.|- +++..+...--.|+.+..-+. .....|+++.|...+..... ....+--+++....+.|++++|+.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 345555444 455555544334554443333 34566888888888776553 356677888888888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004114 498 IFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 498 Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
+-.-|+...++ |...........-..|.+|++...|+.+.
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 88888776654 22222222233345677888887777664
No 379
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.91 E-value=3.7e+02 Score=28.00 Aligned_cols=122 Identities=12% Similarity=0.155 Sum_probs=55.3
Q ss_pred HHHHHHHHh--CCChHHHHHHHHHhhcCCHh-H-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 004114 449 NGILKMYSE--CDSMDDAFSVFSNMTERDLT-S-WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL 524 (773)
Q Consensus 449 naLI~ay~k--~G~l~eA~~lf~~M~~~d~~-t-yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~ 524 (773)
..+|+++.- .+++++|.+.+ .+|.+. + ..-+|.++...|+.+.|+.+++.+.-..-.+ .....++.+ ...
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L---~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~ 153 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELL---SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LAN 153 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHh---CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHc
Confidence 444554433 34455555554 233221 1 1236666666777777777766543221111 122222223 334
Q ss_pred CChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHH
Q 004114 525 GDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVD 580 (773)
Q Consensus 525 G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ 580 (773)
+.+.+|..+-...... -....+..++..+.....-..+.+.+-.+++.+...
T Consensus 154 ~~v~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 154 GLVTEAFSFQRSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred CCHHHHHHHHHhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 6677776654433221 012355556655554332233344444455554443
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=31.74 E-value=1.2e+02 Score=30.46 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 004114 577 PDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDP 610 (773)
Q Consensus 577 Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p 610 (773)
|+..+|..++.++...|+.++|++..+.+..+-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444444444444444444444444443333
No 381
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=31.44 E-value=1.8e+02 Score=29.11 Aligned_cols=30 Identities=7% Similarity=-0.016 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004114 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNM 471 (773)
Q Consensus 442 ~pd~~tynaLI~ay~k~G~l~eA~~lf~~M 471 (773)
.|+..+|..++.++...|+.++|.++..++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444555555555555555554444443
No 382
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.12 E-value=6.1e+02 Score=26.18 Aligned_cols=132 Identities=11% Similarity=0.090 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhH
Q 004114 476 LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF--IGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSI 553 (773)
Q Consensus 476 ~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty--~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~L 553 (773)
...|..+|...-...- +......+|....-+-...++ ..+..++...+++++|+..+...... |....+..|
T Consensus 54 S~~Y~~~i~~~~ak~~--~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l 127 (207)
T COG2976 54 SAQYQNAIKAVQAKKP--KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHhcCCc--hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHH
Q ss_pred HH-----HHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 554 VD-----MLGSTGYLDEALEFIEKMPMEPDVDVWEKLMN-LCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 554 I~-----~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~-a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
+. .....|..|+|+.+++...-+--..+...|-. ++...|+-+.|+..++...+.+++.+
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
No 383
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=30.91 E-value=2.7e+02 Score=25.88 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 425 ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 425 ~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
..++|..|.+.+...+- ...++--+-+..+...|++++|+..=.....||++.|-+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45666666666666543 122222233444556677777633323333456666654433 356666666666666554
Q ss_pred CC
Q 004114 505 AG 506 (773)
Q Consensus 505 ~G 506 (773)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 384
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=30.86 E-value=1e+02 Score=25.24 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=14.7
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 475 d~~tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
|-.-.--+|.||...|++++|.+..+++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334445555555555555555555544
No 385
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=30.80 E-value=4.5e+02 Score=28.77 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=19.8
Q ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCh
Q 004114 564 DEALEFIEKM-------PMEPDVDVWEKLMNLCRMHGNL 595 (773)
Q Consensus 564 ~eA~~lf~~M-------~~~Pd~~ty~~LI~a~~~~G~~ 595 (773)
+.|.++++.+ |-.|....-.++.-|+..+|..
T Consensus 238 ~~A~~i~~~a~~~~l~~Gr~P~sIAAAaIYlA~~~~g~~ 276 (310)
T PRK00423 238 KKAIEILQKAKEKGLTSGKGPTGLAAAAIYIASLLLGER 276 (310)
T ss_pred HHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHhCCC
Confidence 4566666655 4456666666666676666643
No 386
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=30.69 E-value=1e+03 Score=28.55 Aligned_cols=166 Identities=11% Similarity=0.159 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHH
Q 004114 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL--KPDDQIFIGVF 518 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv--~Pd~~Ty~~LL 518 (773)
+..+|..-++--.+.|+.+.+.-+|++..-| =...|=-++.-....|+.+-|..++..-.+--+ .|....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4678999999999999999999999998755 234455555555556888888887766554333 23333344443
Q ss_pred HHHHcCCChHHHHHHHHHHHHhcCCCCCc-chhhhHHHHHHhCCCHHHHH---HHHHhC-CCCCCHHHHHHHHHH-----
Q 004114 519 SACSALGDVVEGMLHFESMSKDYGIVPSM-KHYVSIVDMLGSTGYLDEAL---EFIEKM-PMEPDVDVWEKLMNL----- 588 (773)
Q Consensus 519 ~a~~~~G~~deA~~if~~M~~~~Gi~Pd~-~tyn~LI~~y~r~G~l~eA~---~lf~~M-~~~Pd~~ty~~LI~a----- 588 (773)
. -..|+.+.|..+++.+..+ + |.. ..-.--+.+..+.|.++.+. +++... .-+-+..+...+.--
T Consensus 376 ~--e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 E--ESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred H--HhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 3 3468999999999999876 3 543 33333456677888888888 555544 112222222222222
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCch
Q 004114 589 CRMHGNLELGDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 589 ~~~~G~~e~A~~~~e~m~el~p~~~~ 614 (773)
+...++.+.|..++..+.+..|++..
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~ 476 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKV 476 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHH
Confidence 23356778888888888888887743
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=30.40 E-value=87 Score=24.04 Aligned_cols=20 Identities=30% Similarity=0.268 Sum_probs=9.2
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004114 418 QACGDAKALEEAKAVHEHVE 437 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~ 437 (773)
.+|...|+.+.|++++++++
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444
No 388
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=30.40 E-value=52 Score=36.36 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=67.0
Q ss_pred HHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCh
Q 004114 519 SACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PM-EPDVDVWEKLMNLCRMHGNL 595 (773)
Q Consensus 519 ~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~-~Pd~~ty~~LI~a~~~~G~~ 595 (773)
.-|.+.|.+++|+..|..-. .+.| +.++|..-..+|.+..++..|+.=.... .+ +.-+..|..-+.|-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 35788999999999987643 3556 7888888888999999988777655443 11 11233455555555567888
Q ss_pred hHHHHHHHHHHHcCCCCc
Q 004114 596 ELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 596 e~A~~~~e~m~el~p~~~ 613 (773)
++|.+-++...+++|...
T Consensus 182 ~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHhHHHHHhhCcccH
Confidence 899999999999999874
No 389
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=29.74 E-value=43 Score=32.15 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=24.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQAC 420 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~ 420 (773)
+...|.-.+|..+|.+|++.|-.||. |+.||.++
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34455566688889999999888884 67777665
No 390
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.40 E-value=1e+03 Score=29.96 Aligned_cols=168 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHH
Q 004114 418 QACGDAKALEEAKAVHEHVERLLSPLRVS--TYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDA 495 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~G~~pd~~--tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deA 495 (773)
+.|...|.+++|+++-+.- |+.. ++-.-.+.|...+++..|-+++.++ ..+|..+.--|....+.+ +
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~ 434 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-A 434 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-H
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH------cCCChH------------HHHHHHHHHHHhcCCCCCcchhhhHHHHH
Q 004114 496 VDIFSQFKQAGLKPDDQIFIGVFSACS------ALGDVV------------EGMLHFESMSKDYGIVPSMKHYVSIVDML 557 (773)
Q Consensus 496 l~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~------~~G~~d------------eA~~if~~M~~~~Gi~Pd~~tyn~LI~~y 557 (773)
+..|-.=+...++|...|=..+|.... +.++++ +-..+-.++.+.....-+...+.+....+
T Consensus 435 L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~ 514 (911)
T KOG2034|consen 435 LRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLL 514 (911)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHH
Q ss_pred HhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 004114 558 GSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCA 602 (773)
Q Consensus 558 ~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~ 602 (773)
...|+.+++..+-.-|+ .|..++.-++..+.+++|.+++
T Consensus 515 ~~~~~~e~ll~fA~l~~------d~~~vv~~~~q~e~yeeaLevL 553 (911)
T KOG2034|consen 515 ASHGRQEELLQFANLIK------DYEFVVSYWIQQENYEEALEVL 553 (911)
T ss_pred HHccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
No 391
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=29.40 E-value=1.1e+02 Score=20.75 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
+|..+-..|...|+.++|++.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 392
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.13 E-value=9.3e+02 Score=27.67 Aligned_cols=158 Identities=15% Similarity=0.187 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhc------CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHC---------CCCCC
Q 004114 446 STYNGILKMYSECDSMDDAFSVFSNMTE------RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQA---------GLKPD 510 (773)
Q Consensus 446 ~tynaLI~ay~k~G~l~eA~~lf~~M~~------~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~---------Gv~Pd 510 (773)
..+.-|-+-|..||+++.|++.+.+..+ .-+..|-.+|..-.-.|+|........+.... -+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4567788899999999999999998653 13345666777667778887777776666543 12233
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcC-----CCCCcchhhhHHHHHHhCCCHHHHHHHHHhC------CCCCCH
Q 004114 511 DQIFIGVFSACSALGDVVEGMLHFESMSKDYG-----IVPSMKHYVSIVDMLGSTGYLDEALEFIEKM------PMEPDV 579 (773)
Q Consensus 511 ~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~G-----i~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M------~~~Pd~ 579 (773)
...+..|..-+.+ +...|.+.|-....+.. +.|.-.+-..++.+++.-++-+--..+.... .++|.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq- 307 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ- 307 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH-
Confidence 3344444443333 66666666644433221 2232222223444555545444333333322 22333
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 580 DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 580 ~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.+..|..-| .. ++ -.+++.|.++.|.-
T Consensus 308 -lr~il~~fy-~s-ky---~~cl~~L~~~k~~l 334 (466)
T KOG0686|consen 308 -LREILFKFY-SS-KY---ASCLELLREIKPRL 334 (466)
T ss_pred -HHHHHHHHh-hh-hH---HHHHHHHHHhccce
Confidence 343333333 22 22 36677777776654
No 393
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=28.95 E-value=1e+03 Score=28.12 Aligned_cols=180 Identities=6% Similarity=-0.036 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC---HhHHHHHHH
Q 004114 408 VDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERD---LTSWDTMIT 484 (773)
Q Consensus 408 Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d---~~tyn~LI~ 484 (773)
+....|..|+..+. .-+.+.-.+++.++.. - + ...+..++++...+|--.....+.+.+.... ...-..++.
T Consensus 308 ~~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~ 382 (574)
T smart00638 308 PAAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAV 382 (574)
T ss_pred chHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35556777777664 4457888888888754 1 1 5688999999999999888888888887643 233333444
Q ss_pred HHHHc-CChHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHcCCC------hHHHHHHHHHHHHhcCCCCCcch
Q 004114 485 GFAKN-GLGEDAVDIFSQFKQA-GLKPDD-------QIFIGVFSACSALGD------VVEGMLHFESMSKDYGIVPSMKH 549 (773)
Q Consensus 485 ay~~~-G~~deAl~Lf~eM~~~-Gv~Pd~-------~Ty~~LL~a~~~~G~------~deA~~if~~M~~~~Gi~Pd~~t 549 (773)
+..-. ---.+.++.+.+|.+. .+.+.. .+|.+|+.-+|.... +++....+.......--.-|..-
T Consensus 383 ~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 383 LPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred HHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh
Confidence 33332 2245566666666654 455554 466667764454433 23444444433222101123333
Q ss_pred hhhHHHHHHhCCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHc
Q 004114 550 YVSIVDMLGSTGYLDEALEFIEKM-P-MEPDVDVWEKLMNLCRMH 592 (773)
Q Consensus 550 yn~LI~~y~r~G~l~eA~~lf~~M-~-~~Pd~~ty~~LI~a~~~~ 592 (773)
-...|.+++..|....+..+..-+ + ......+-...|.|+.+.
T Consensus 463 ~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~ 507 (574)
T smart00638 463 IQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNL 507 (574)
T ss_pred eeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 456788999999866654444333 2 123344555566666543
No 394
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.89 E-value=7.8e+02 Score=27.76 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=10.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 004114 384 GLVKEGKVKEAIEVLGLLEKQ 404 (773)
Q Consensus 384 a~~~~G~~~eAl~lf~~M~~~ 404 (773)
.+.+.+++..|.++|..+...
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR 160 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh
Confidence 333445555555555555444
No 395
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.79 E-value=4.1e+02 Score=31.46 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLE 402 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~ 402 (773)
+|+.-|.+.+++++|+.++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 57888899999999999888874
No 396
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.61 E-value=4e+02 Score=23.72 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 431 AVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 431 ~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
++|+.....|+..|..+|..+++.+.-+=..+....+++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777777777777777777777766666666666666665
No 397
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=28.21 E-value=3.2e+02 Score=23.91 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHH
Q 004114 430 KAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDA 495 (773)
Q Consensus 430 ~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deA 495 (773)
..++..+.+.|+- +... .-..-+..-+.+.|.++++.++.++..+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vl-t~~~---~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVF-TPDM---IEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCC-CHHH---HHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3456666666643 2211 122223445677788888888888888888888887777655444
No 398
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=28.13 E-value=1.4e+03 Score=29.29 Aligned_cols=125 Identities=19% Similarity=0.154 Sum_probs=62.0
Q ss_pred hCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFES 536 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~ 536 (773)
+..-..+|.++-..|.+ .-++||.++++.|.. +.-++.+... .+-|.. -....++...+.|.+
T Consensus 1159 k~D~r~da~klk~~me~----qk~tli~AL~kKg~a---~ak~e~l~g~-~e~dae---------ee~s~ld~~~e~y~e 1221 (1304)
T KOG1114|consen 1159 KEDTRPDAVKLKKKMEK----QKDTLIDALVKKGEA---FAKYEALKGH-KEQDAE---------EELSKLDSYNENYQE 1221 (1304)
T ss_pred ccCCcchHHHHHHHHHH----HHHHHHHHHHHhhhH---Hhhhhhhccc-ccccch---------hhhhhhhhHHHHHHH
Confidence 33445567777777763 346788888877632 2222211111 010111 011233444455555
Q ss_pred HHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChhHHH
Q 004114 537 MSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPDVDVWEKLMNLCRMHGNLELGD 599 (773)
Q Consensus 537 M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd~~ty~~LI~a~~~~G~~e~A~ 599 (773)
+.+= --.-|..++..-..-+...|++-.|++++.++ +-.++...|..++..|...|.-..|.
T Consensus 1222 l~kw-~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~t 1287 (1304)
T KOG1114|consen 1222 LLKW-LDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLAT 1287 (1304)
T ss_pred HHHH-hhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhHH
Confidence 4432 11224445555555555566666666555544 44566666666777666666544443
No 399
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=28.00 E-value=56 Score=31.43 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=27.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004114 487 AKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS 522 (773)
Q Consensus 487 ~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~ 522 (773)
-..|.-.+|..+|.+|++.|-.||. |..||.++.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a~ 139 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEAK 139 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHhc
Confidence 3456777899999999999999985 788887653
No 400
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=27.60 E-value=2.8e+02 Score=26.62 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=31.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 004114 395 IEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL 439 (773)
Q Consensus 395 l~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~ 439 (773)
.+.+..+....+.|+.......|+||-+..++..|.++|+-++.+
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 334445555667777777777777777777777777777766554
No 401
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.26 E-value=6.7e+02 Score=29.58 Aligned_cols=91 Identities=9% Similarity=0.144 Sum_probs=53.3
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHH
Q 004114 401 LEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWD 480 (773)
Q Consensus 401 M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn 480 (773)
+.+.|+..+......++..+ .|++..|..+++++...|- ...+...+-.++. ..+....-
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~--~~It~~~V~~~lg----------------~~~~~~i~ 250 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGN--GKVLIADVKTMLG----------------TIEPLLLF 250 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCC--CCcCHHHHHHHHC----------------CCCHHHHH
Confidence 44567777776666665543 5888888888877665431 1112222222211 22333344
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 004114 481 TMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ 512 (773)
Q Consensus 481 ~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~ 512 (773)
.|+.++. .++.++|+.++++|...|..|...
T Consensus 251 ~ll~al~-~~d~~~~l~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 251 DILEALA-AKAGDRLLGCVTRLVEQGVDFSNA 281 (509)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 4555544 477888999999999888877543
No 402
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=27.01 E-value=5.5e+02 Score=28.35 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=26.2
Q ss_pred CCCHHHHHHHH-HHHHhcCChh-HHHHhh----hhccHHHHHHHHHHcCCHHHHHHHH
Q 004114 347 IQNGMMASQVL-NNCKHEDDFA-EASRSS----QNNGTLEQLDGLVKEGKVKEAIEVL 398 (773)
Q Consensus 347 ~pd~~~~n~LI-~~y~k~g~~~-~A~~v~----~~~~~~~LI~a~~~~G~~~eAl~lf 398 (773)
.|+..+++.|. +.+.+.|=.- -|.++| ......++|+.+.+.+.-+.-+++|
T Consensus 162 t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~i~~lis~Lrkg~md~rLmeff 219 (412)
T KOG2297|consen 162 TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKDINDLISSLRKGKMDDRLMEFF 219 (412)
T ss_pred CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhccHHHHHHHHHhcChHhHHHHhc
Confidence 44455555554 3444433221 122332 2344456888887777666555554
No 403
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=26.96 E-value=1.8e+02 Score=22.55 Aligned_cols=33 Identities=15% Similarity=0.404 Sum_probs=19.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004114 487 AKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFS 519 (773)
Q Consensus 487 ~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~ 519 (773)
.+.|...++..++++|.+.|+.-+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345556666666666666666666665555543
No 404
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=26.44 E-value=8.1e+02 Score=26.14 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=42.0
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC---C-CCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM---P-MEP-----DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M---~-~~P-----d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.|++.|.+.|+++.|-.++--+ . ... +...-..|+.+....++++.+.++.+.+..++|++
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~ 253 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEG 253 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 4666777777777776555433 2 111 23334456777788899999999999999998865
No 405
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.37 E-value=6.3e+02 Score=26.01 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=27.6
Q ss_pred HHhCCChHHHHHHHHHhhc------CCHhHHHHHHH-HHHHcCC--hHHHHHHHHHHHH
Q 004114 455 YSECDSMDDAFSVFSNMTE------RDLTSWDTMIT-GFAKNGL--GEDAVDIFSQFKQ 504 (773)
Q Consensus 455 y~k~G~l~eA~~lf~~M~~------~d~~tyn~LI~-ay~~~G~--~deAl~Lf~eM~~ 504 (773)
....|++++|..-++++.+ +-...|..+.. +||.++. +-+|..++.-+..
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 3345666666666666542 23445666555 6666654 4456655554443
No 406
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.12 E-value=4.4e+02 Score=27.67 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEK----QC-ISVDLPTFSQLMQACGDAKALEEAKAV 432 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~----~G-v~Pd~~ty~~LL~a~~~~g~le~A~~l 432 (773)
+|..-|.+.|++++|+++|+.+.. .| ..+...+...++.++...|+.+....+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 356667777777777777766632 12 122223333344444445555444444
No 407
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=25.90 E-value=1.1e+02 Score=33.47 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVF 518 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL 518 (773)
|+..|..-.+.|++++|+.|++|.++.|+.--..||...+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 5677777888888888888888888887764445554433
No 408
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=25.86 E-value=4.1e+02 Score=32.10 Aligned_cols=210 Identities=11% Similarity=0.036 Sum_probs=96.9
Q ss_pred HHHHHHHhcCChhHH------HHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---
Q 004114 355 QVLNNCKHEDDFAEA------SRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKA--- 425 (773)
Q Consensus 355 ~LI~~y~k~g~~~~A------~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~--- 425 (773)
.+|.+|.+..-.... ..++.-....++|--|.|+|++++|+++..+.... .......|...+.+++...+
T Consensus 85 ~~V~afv~~~~~~~~~~~~~~l~~~~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l 163 (613)
T PF04097_consen 85 NKVRAFVNVRLKRPGAWTDSGLEIVNGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRL 163 (613)
T ss_dssp HHHHHHHHCTTBESSCBSSTT--EETTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS--
T ss_pred HHHHHHHHHHhcccCCCcccccccCCCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCC
Confidence 366667665432211 11335556667999999999999999999655433 45555678888888876532
Q ss_pred ----HHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHhCCChHHHH-HHHHHhh-----------cCC--------HhH
Q 004114 426 ----LEEAKAVHEHVERLLSPLRVS---TYNGILKMYSECDSMDDAF-SVFSNMT-----------ERD--------LTS 478 (773)
Q Consensus 426 ----le~A~~l~~~m~k~G~~pd~~---tynaLI~ay~k~G~l~eA~-~lf~~M~-----------~~d--------~~t 478 (773)
.+....-|+...+.....|.. +|..| ++|.-.+.-. .|+..+. +.+ ..+
T Consensus 164 ~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~il----g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~ 239 (613)
T PF04097_consen 164 PPELRDKLKLEYNQRIRNSTDGDPYKRAVYKIL----GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYT 239 (613)
T ss_dssp -TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHHH----HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----
T ss_pred CHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH----hcCCccccchHHHhCcHHHHHHHHHHhhccCCCcccccccccc
Confidence 234455555555543322542 44444 4433211111 1111110 000 111
Q ss_pred H---------------------HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 479 W---------------------DTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 479 y---------------------n~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+ -.....+.-.|.++.|++.+-+ ..+...|.+-+...|..|.- +......-..+
T Consensus 240 L~~LQ~~i~~~Ge~~F~~~~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gL---L~~~~~~~~~l 314 (613)
T PF04097_consen 240 LEDLQKLILKYGESHFNAGSNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGL---LRVSDSSSAPL 314 (613)
T ss_dssp HHHHHHHHHHH-GGGCTT------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHHhchhhcccchhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCC---CCCCCccccce
Confidence 1 1223445566788888887766 22344555655555544332 22221111111
Q ss_pred HHhcCCCCCcchhhhHHHHHHh---CCCHHHHHHHHHhCC
Q 004114 538 SKDYGIVPSMKHYVSIVDMLGS---TGYLDEALEFIEKMP 574 (773)
Q Consensus 538 ~~~~Gi~Pd~~tyn~LI~~y~r---~G~l~eA~~lf~~M~ 574 (773)
...-.-.|....+..||..|++ ..+..+|.+.|--+.
T Consensus 315 ls~~~~~~~~ln~arLI~~Y~~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 315 LSVDPGDPPPLNFARLIGQYTRSFEITDPREALQYLYLIC 354 (613)
T ss_dssp ------------HHHHHHHHHHTTTTT-HHHHHHHHHGGG
T ss_pred eeecCCCCCCcCHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1110011112567788888876 457788888887773
No 409
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=25.83 E-value=8.2e+02 Score=26.61 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=18.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004114 482 MITGFAKNGLGEDAVDIFSQFKQAGLKP 509 (773)
Q Consensus 482 LI~ay~~~G~~deAl~Lf~eM~~~Gv~P 509 (773)
++.+.. .|+..+|+.++++|.+.|..|
T Consensus 250 l~~ai~-~~~~~~a~~~~~~l~~~~~~~ 276 (355)
T TIGR02397 250 LLEAIL-NKDTAEALKILDEILESGVDP 276 (355)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 444444 377888888888887776654
No 410
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=25.77 E-value=1.2e+03 Score=27.78 Aligned_cols=228 Identities=9% Similarity=-0.031 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 004114 390 KVKEAIEVLGLLE---KQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFS 466 (773)
Q Consensus 390 ~~~eAl~lf~~M~---~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~ 466 (773)
...+.++.+.+.. ...+..+....-..|--..+.-+.+.-.+++.++...- .....+..+++++..+|--..+.-
T Consensus 322 ~~~~l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~ 399 (618)
T PF01347_consen 322 NLKELLKELADLLEEPEDPVSKETLSKFSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKF 399 (618)
T ss_dssp ---HHHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHH
Q ss_pred HHHHhhcC-----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHcC----------
Q 004114 467 VFSNMTER-----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-------DQIFIGVFSACSAL---------- 524 (773)
Q Consensus 467 lf~~M~~~-----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-------~~Ty~~LL~a~~~~---------- 524 (773)
+.+.+... ....+-..+-...+.-..+-...+++-+....+..+ ..++..|+.-+|..
T Consensus 400 i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~ 479 (618)
T PF01347_consen 400 IKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPC 479 (618)
T ss_dssp HHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccccccccc
Q ss_pred --CChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH--HcCChhHH
Q 004114 525 --GDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM--PMEPDVDVWEKLMNLCR--MHGNLELG 598 (773)
Q Consensus 525 --G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~--~~G~~e~A 598 (773)
-..++....+.......--.-|...-...|.+++..|...-+..+..-+ ....+...=...|.|+. ..-..+.+
T Consensus 480 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v 559 (618)
T PF01347_consen 480 SRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV 559 (618)
T ss_dssp -SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH
T ss_pred chhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH
Q ss_pred HHHHHHHHHcCCCCchHHHHc
Q 004114 599 DRCAEIVEQLDPSRLNEKSKA 619 (773)
Q Consensus 599 ~~~~e~m~el~p~~~~~y~~a 619 (773)
..++-.+..-..++..+-..|
T Consensus 560 ~~~l~~I~~n~~e~~EvRiaA 580 (618)
T PF01347_consen 560 REILLPIFMNTTEDPEVRIAA 580 (618)
T ss_dssp HHHHHHHHH-TTS-HHHHHHH
T ss_pred HHHHHHHhcCCCCChhHHHHH
No 411
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=25.57 E-value=8.5e+02 Score=26.05 Aligned_cols=118 Identities=16% Similarity=0.208 Sum_probs=61.0
Q ss_pred HHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHH
Q 004114 451 ILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG 530 (773)
Q Consensus 451 LI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA 530 (773)
-|..|.+.-++.-|...++++.+|=. + .+-|--|.+..+..---.+.+-.+.+++.-+..-.-++|. ...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPIQ-S-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiif--ta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPIQ-S-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIF--TAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhHH-h-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhh--hccchHHHH
Confidence 35556666666666666665555411 1 1222334444444444444444455666555555544443 356888888
Q ss_pred HHHHHHHHHhcCC-----------CCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 531 MLHFESMSKDYGI-----------VPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 531 ~~if~~M~~~~Gi-----------~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
...+..-...+|+ .|.+.....|+..| ..+++++|.+++.++
T Consensus 212 lNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~l 264 (333)
T KOG0991|consen 212 LNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAEL 264 (333)
T ss_pred HHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHH
Confidence 7777666554443 23333333444332 345666666666655
No 412
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=25.49 E-value=4.5e+02 Score=24.65 Aligned_cols=43 Identities=5% Similarity=0.080 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHH
Q 004114 428 EAKAVHEHVERLLSPLR-VSTYNGILKMYSECDSMDDAFSVFSN 470 (773)
Q Consensus 428 ~A~~l~~~m~k~G~~pd-~~tynaLI~ay~k~G~l~eA~~lf~~ 470 (773)
.+.++|..|...|+-.. +..|......+.+.|++++|.+||..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88888888888866433 55677777888888888888888864
No 413
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=25.47 E-value=6.1e+02 Score=29.12 Aligned_cols=205 Identities=12% Similarity=0.104 Sum_probs=95.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCCH-HHHHHHHHHHHh
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL--LSPLRV-STYNGILKMYSE 457 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~--G~~pd~-~tynaLI~ay~k 457 (773)
.+.++...++.+..-..|....-. ....-++..-||+...-.|+.....++.+.|.+. |-.|.. +|| -+--+|.-
T Consensus 207 ql~~~~s~~dp~~va~~~g~s~~y-~~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY-~VGFayLm 284 (525)
T KOG3677|consen 207 QLTASVSNKDPALVALIFGASQPY-ANLGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTY-QVGFAYLM 284 (525)
T ss_pred HHHHHhcCCChhhhhhhhccccHH-HhhhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEee-ehhHHHHH
Confidence 455555666555544333221100 0112345566778888888877777888887765 434432 232 34456666
Q ss_pred CCChHHHHHHHHHhh---cCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc-------CC
Q 004114 458 CDSMDDAFSVFSNMT---ERDLTSWDTMITGFAKNG-LGEDAVDIFSQFKQAG-LKPDDQIFIGVFSACSA-------LG 525 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~---~~d~~tyn~LI~ay~~~G-~~deAl~Lf~eM~~~G-v~Pd~~Ty~~LL~a~~~-------~G 525 (773)
.|++.+|.++|-.+. +++-..+...--.|-..+ ..|....++.-.+..- -..| .++...+.-|+. .|
T Consensus 285 mrryadai~~F~niLlyIqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~iD-ESi~s~l~Ek~~d~ml~mqng 363 (525)
T KOG3677|consen 285 MRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMID-ESIHSQLAEKYGDKMLPMQNG 363 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhhh-HHHHHHHHHHhcchhhhhhcC
Confidence 788888988887664 221111111111111111 1222222221111100 0112 345444444432 24
Q ss_pred ChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004114 526 DVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLC 589 (773)
Q Consensus 526 ~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~ 589 (773)
+.+.-..+|--.... -+.|.+..|..++.-|.+.-......-++++..-..+..+....++.|
T Consensus 364 ~~q~~ks~f~y~cpk-flsp~~~~~dgv~~~y~kePl~~qlq~fld~v~qq~dl~~~rsylkly 426 (525)
T KOG3677|consen 364 DPQVFKSLFSYLCPK-FLSPVVPNYDGVLPNYHKEPLLQQLQVFLDEVSQQADLPTIRSYLKLY 426 (525)
T ss_pred ChHHHHHHHHHcCcc-ccCCCCcccccccccccccHHHHHHHHHhHHHhhhccchHHHHHHHHH
Confidence 444333333222222 244566667667766666554444444444443334555555555554
No 414
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.13 E-value=5.7e+02 Score=26.33 Aligned_cols=18 Identities=22% Similarity=0.123 Sum_probs=11.0
Q ss_pred cCCChHHHHHHHHHHHHh
Q 004114 523 ALGDVVEGMLHFESMSKD 540 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~ 540 (773)
+.|+++.|..+++-|.+-
T Consensus 133 ~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 133 RKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 456666666666666543
No 415
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=24.69 E-value=1e+03 Score=26.89 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=41.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHh--CCChHHHHHHHHHhhcCC
Q 004114 419 ACGDAKALEEAKAVHEHVERLLSPLRVS--TYNGILKMYSE--CDSMDDAFSVFSNMTERD 475 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~G~~pd~~--tynaLI~ay~k--~G~l~eA~~lf~~M~~~d 475 (773)
.+-..+++..|.+++..+... ++++.. .+..|..+|.. .-+.++|.+.|+.....+
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 344788999999999999987 555544 55566666654 557888999998876553
No 416
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=24.44 E-value=4.3e+02 Score=23.57 Aligned_cols=67 Identities=10% Similarity=0.018 Sum_probs=46.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 004114 394 AIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFS 466 (773)
Q Consensus 394 Al~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~ 466 (773)
+-++++.+.+.|+- +......+..+-...|+.+.|++++..+. +| |+ .|...++++...|.-+-|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhhhc
Confidence 55677777777743 33344444444446788999999999988 65 33 57888999988887666643
No 417
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.24 E-value=9.1e+02 Score=25.96 Aligned_cols=200 Identities=18% Similarity=0.187 Sum_probs=109.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
...+|..+.++++|...+.+..+. .+-+..-| -.+...+.|--+.++|.+. .--+..|.--..+|..+|.
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGS 106 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCC
Confidence 455667777777777766655421 11111111 1223355555566666553 1123456777888999999
Q ss_pred hHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 004114 461 MDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQA---G--LKPDDQIFIGVFSACSALGDVVEGMLHFE 535 (773)
Q Consensus 461 l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~---G--v~Pd~~Ty~~LL~a~~~~G~~deA~~if~ 535 (773)
.+-|-..+++.-+ ...+-++++|+.+|.+-..- + .+--...|..+-..+.+...+++|-..|.
T Consensus 107 pdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 107 PDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred cchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 8888777765431 12244566666666654331 0 00001123333344455566666654443
Q ss_pred HHH---HhcCCCCCc-chhhhHHHHHHhCCCHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHHHcCChhHHHHHHH
Q 004114 536 SMS---KDYGIVPSM-KHYVSIVDMLGSTGYLDEALEFIEKM---P--MEP-DVDVWEKLMNLCRMHGNLELGDRCAE 603 (773)
Q Consensus 536 ~M~---~~~Gi~Pd~-~tyn~LI~~y~r~G~l~eA~~lf~~M---~--~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e 603 (773)
+-. ....-.++. ..|.+.|-.|....++..|...++.- | ..+ +..+...||.+|- .|+.|.+..++.
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 221 110111221 33556666777788999999999883 2 122 5678888998875 577776665543
No 418
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.97 E-value=2.2e+03 Score=30.35 Aligned_cols=115 Identities=13% Similarity=-0.015 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCChhHHHHhhh----hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 004114 352 MASQVLNNCKHEDDFAEASRSSQ----NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVD-LPTFSQLMQACGDAKAL 426 (773)
Q Consensus 352 ~~n~LI~~y~k~g~~~~A~~v~~----~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd-~~ty~~LL~a~~~~g~l 426 (773)
.+-.|...|+.-+++|...-+.. ......-|-.....|+++.|...|+.|... .|| ..+++-+++..-..+.+
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l 1499 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHL 1499 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccch
Confidence 34456669999999998777533 344446788899999999999999999876 455 66788788777777777
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHH-HHHHHHhCCChHHHHHHHH
Q 004114 427 EEAKAVHEHVERLLSPLRVSTYNG-ILKMYSECDSMDDAFSVFS 469 (773)
Q Consensus 427 e~A~~l~~~m~k~G~~pd~~tyna-LI~ay~k~G~l~eA~~lf~ 469 (773)
+.+....+-.... ..+....+++ =+.+--+.+++|..+....
T Consensus 1500 ~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1500 STEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred hHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 7766644433332 2222323332 2344455666665555543
No 419
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.49 E-value=5e+02 Score=31.54 Aligned_cols=47 Identities=13% Similarity=0.098 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhCCCh
Q 004114 415 QLMQACGDAKALEEAKAVHEHVERL--LSPLRVSTYNGILKMYSECDSM 461 (773)
Q Consensus 415 ~LL~a~~~~g~le~A~~l~~~m~k~--G~~pd~~tynaLI~ay~k~G~l 461 (773)
+|+.||...|++..+.++++.+... |-+.-...+|..|+-..+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 6777777777777777777777654 3333345666666666666653
No 420
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.48 E-value=5.4e+02 Score=23.06 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAK--ALEEAKAVHEHVERLLS 441 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g--~le~A~~l~~~m~k~G~ 441 (773)
.+|.-|...+++++|.+-+.++...... ......+|..+...+ .-+.+..++..+.+.+.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~~~~~~--~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELKLPEQH--HEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhCCCcch--HHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 3677888888888888888877543222 223334444444432 34555556666665543
No 421
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=23.11 E-value=4.4e+02 Score=23.29 Aligned_cols=34 Identities=6% Similarity=0.195 Sum_probs=23.1
Q ss_pred CCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCC
Q 004114 458 CDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGL 491 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~ 491 (773)
.-+.+.+.++++.++.++..+|.++..++-..+.
T Consensus 47 ~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 47 PTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 3456777777777777777777777777765443
No 422
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=23.03 E-value=4.8e+02 Score=30.02 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=47.3
Q ss_pred chHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCC---HHHHHHHHHH
Q 004114 334 NPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGK---VKEAIEVLGL 400 (773)
Q Consensus 334 ~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~---~~eAl~lf~~ 400 (773)
.+.++.++.+..+.||..++--+..+|.+.=-++-|.+ +.+.||+.|+ +..|+.+|+-
T Consensus 458 lp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacR---------IwDvy~rdgeeFlfr~~lgIlkl 518 (586)
T KOG2223|consen 458 LPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACR---------IWDVYCRDGEEFLFRTALGILKL 518 (586)
T ss_pred cHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhh---------hhheeeecchHHHHHHHHHHHHH
Confidence 47788899999999999999999999999999999998 4567777775 4455555543
No 423
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=23.02 E-value=1.8e+02 Score=33.45 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 579 VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 579 ~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
..+..+-|..+.+++++..|..+.+++.++.|..
T Consensus 300 ~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 300 ILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3466777888889999999999999999998765
No 424
>PHA03100 ankyrin repeat protein; Provisional
Probab=22.84 E-value=4.8e+02 Score=29.74 Aligned_cols=222 Identities=10% Similarity=-0.002 Sum_probs=109.6
Q ss_pred hHHHHHHHHcCCCCCHHH--HHHHHHH-----HHhcCChhHHHHhhhhccH--------HHHHHHHH--HcCCHHHHHHH
Q 004114 335 PNEGQYQSYSGNIQNGMM--ASQVLNN-----CKHEDDFAEASRSSQNNGT--------LEQLDGLV--KEGKVKEAIEV 397 (773)
Q Consensus 335 ~~~~~~m~~~gl~pd~~~--~n~LI~~-----y~k~g~~~~A~~v~~~~~~--------~~LI~a~~--~~G~~~eAl~l 397 (773)
.++...+++.|..++... ....+.. .+..+..+-+..++..... ...+...+ ..|+.+ +
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~----i 123 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYS----I 123 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHH----H
Confidence 456677777777665432 2234455 5666666665554322111 01333333 555544 4
Q ss_pred HHHHHHCCCCCCHHH--HHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCCHHH--HHHHHHHHHhCCChHHHHHHHHHh
Q 004114 398 LGLLEKQCISVDLPT--FSQLMQACGDAK--ALEEAKAVHEHVERLLSPLRVST--YNGILKMYSECDSMDDAFSVFSNM 471 (773)
Q Consensus 398 f~~M~~~Gv~Pd~~t--y~~LL~a~~~~g--~le~A~~l~~~m~k~G~~pd~~t--ynaLI~ay~k~G~l~eA~~lf~~M 471 (773)
++.+.+.|..++... -.+.+..++..+ +.+ +.+.+++.|..++... ..+.+...++.|+.+-+..+++.-
T Consensus 124 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g 199 (480)
T PHA03100 124 VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNG 199 (480)
T ss_pred HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 444556666554321 124455555666 444 4445556676554322 234566677778888777777654
Q ss_pred hcCCH--------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 004114 472 TERDL--------TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ---IFIGVFSACSALGDVVEGMLHFESMSKD 540 (773)
Q Consensus 472 ~~~d~--------~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~---Ty~~LL~a~~~~G~~deA~~if~~M~~~ 540 (773)
..++. ..+.+.+...+..|. ...++++.+.+.|..++.. -.+.|..| +..|..+-+..++ +
T Consensus 200 a~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~~A-~~~~~~~iv~~Ll----~- 271 (480)
T PHA03100 200 ADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLHYA-VYNNNPEFVKYLL----D- 271 (480)
T ss_pred CCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHHHH-HHcCCHHHHHHHH----H-
Confidence 43321 111333444444554 1234445556666655432 23444444 4556655444333 3
Q ss_pred cCCCCCcch--hhhHHHHHHhCCCHHHHHHHHHh
Q 004114 541 YGIVPSMKH--YVSIVDMLGSTGYLDEALEFIEK 572 (773)
Q Consensus 541 ~Gi~Pd~~t--yn~LI~~y~r~G~l~eA~~lf~~ 572 (773)
.|..++... -.+-+...++.+..+-+..+++.
T Consensus 272 ~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ 305 (480)
T PHA03100 272 LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN 305 (480)
T ss_pred cCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhc
Confidence 255454322 11233444556666655555543
No 425
>PRK11619 lytic murein transglycosylase; Provisional
Probab=22.75 E-value=1.4e+03 Score=27.72 Aligned_cols=55 Identities=15% Similarity=0.086 Sum_probs=25.3
Q ss_pred hhHHHHHHhCCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004114 551 VSIVDMLGSTGYLDEALEFIEKMPM--EPDVDVWEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 551 n~LI~~y~r~G~l~eA~~lf~~M~~--~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
..-+..-.+.++++.+...|..|+- .-...-.--+-.++...|+.+.|...++.+
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333344455666666666666521 111111223444444456666555555544
No 426
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=22.67 E-value=1.6e+02 Score=30.71 Aligned_cols=83 Identities=12% Similarity=0.201 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHhCCCC-CHHHHHHHH
Q 004114 390 KVKEAIEVLGLLEKQCIS-------VDLPTFSQLMQACGDAK---------ALEEAKAVHEHVERLLSPL-RVSTYNGIL 452 (773)
Q Consensus 390 ~~~eAl~lf~~M~~~Gv~-------Pd~~ty~~LL~a~~~~g---------~le~A~~l~~~m~k~G~~p-d~~tynaLI 452 (773)
.++.|+.++.+|--..++ -...-|-.+..+|++.| +++--.++++..++.|++- =..+|+++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 467888888888433221 24567888999999886 4667778888888888652 245788888
Q ss_pred HHHHhCCChHHHHHHHHHhh
Q 004114 453 KMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~ 472 (773)
+--.-.-++++..++|..|+
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 76666667888888887765
No 427
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=22.32 E-value=1.7e+03 Score=28.28 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 443 LRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGED-AVDIFSQFKQAGLKPDDQIFIGVFSAC 521 (773)
Q Consensus 443 pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~de-Al~Lf~eM~~~Gv~Pd~~Ty~~LL~a~ 521 (773)
+|..+-...+.++.+.+..+ .+......++...--..+.++...+..+. +...+..+.. .+|...=...+.++
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aL 799 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAAL 799 (897)
T ss_pred CCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 34444445555555544332 12222334455555555555555554332 2333334333 24445555555566
Q ss_pred HcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004114 522 SALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMH 592 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~ 592 (773)
...|....+...+..+.++ ++..+-...+.++++.+.-+ |...+..+--.|+..+=...+.++.+.
T Consensus 800 g~~g~~~~~~~~l~~aL~d----~d~~VR~~Aa~aL~~l~~~~-a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 800 AELGCPPDDVAAATAALRA----SAWQVRQGAARALAGAAADV-AVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HhcCCcchhHHHHHHHhcC----CChHHHHHHHHHHHhccccc-hHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 6555544332222223222 34444444555555555432 333322221144544444455555443
No 428
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=21.95 E-value=3.8e+02 Score=30.87 Aligned_cols=134 Identities=10% Similarity=0.095 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhcCChhHHHHhhhhccH------------------HHHHHH-----HHHcCCHHHHHHHHHHH-------
Q 004114 352 MASQVLNNCKHEDDFAEASRSSQNNGT------------------LEQLDG-----LVKEGKVKEAIEVLGLL------- 401 (773)
Q Consensus 352 ~~n~LI~~y~k~g~~~~A~~v~~~~~~------------------~~LI~a-----~~~~G~~~eAl~lf~~M------- 401 (773)
-.-++|..|||.+.++-...+ .|..+ .++... |...|++-...+++-+.
T Consensus 94 dlES~iTfYCK~Rn~~Y~~d~-gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~ 172 (669)
T KOG3636|consen 94 DLESFITFYCKKRNMDYIKDI-GWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCN 172 (669)
T ss_pred hhhhHhhhhhhccCCcccccc-cHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhh
Confidence 456889999998887765442 11111 122222 33445544444443332
Q ss_pred --HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH--------HHhCCChHHHHHHHHHh
Q 004114 402 --EKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKM--------YSECDSMDDAFSVFSNM 471 (773)
Q Consensus 402 --~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~a--------y~k~G~l~eA~~lf~~M 471 (773)
....+.||..+.+=+-+.++..-..+-...+|+..++.+ .|-.+-+-+||-. -.+...-++|+++++.|
T Consensus 173 ~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenm 251 (669)
T KOG3636|consen 173 HLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENM 251 (669)
T ss_pred hhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcC
Confidence 234578998887766666666667788888888877765 3344334333321 13455678999999999
Q ss_pred hc----CCHhHHHHHHHHHH
Q 004114 472 TE----RDLTSWDTMITGFA 487 (773)
Q Consensus 472 ~~----~d~~tyn~LI~ay~ 487 (773)
+. .|+.-+-.|..-|+
T Consensus 252 p~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 252 PAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred chhcccccchhHHHHHHHHh
Confidence 84 25555555555554
No 429
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=21.83 E-value=1.4e+02 Score=22.87 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQC 405 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~G 405 (773)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778888999999999998888654
No 430
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=21.73 E-value=9e+02 Score=27.43 Aligned_cols=9 Identities=11% Similarity=0.143 Sum_probs=6.0
Q ss_pred cCCChHHHH
Q 004114 523 ALGDVVEGM 531 (773)
Q Consensus 523 ~~G~~deA~ 531 (773)
..|+++.|.
T Consensus 258 ~~~ry~da~ 266 (380)
T TIGR02710 258 TQGRYDDAA 266 (380)
T ss_pred HccCHHHHH
Confidence 567777765
No 431
>PHA03100 ankyrin repeat protein; Provisional
Probab=21.51 E-value=5.3e+02 Score=29.40 Aligned_cols=18 Identities=11% Similarity=-0.058 Sum_probs=9.3
Q ss_pred HHHHHHHhcCChhHHHHh
Q 004114 355 QVLNNCKHEDDFAEASRS 372 (773)
Q Consensus 355 ~LI~~y~k~g~~~~A~~v 372 (773)
..+...++.++.+-+..+
T Consensus 37 t~L~~A~~~~~~~ivk~L 54 (480)
T PHA03100 37 LPLYLAKEARNIDVVKIL 54 (480)
T ss_pred hhhhhhhccCCHHHHHHH
Confidence 344445555555555554
No 432
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=21.11 E-value=1.6e+03 Score=27.73 Aligned_cols=108 Identities=10% Similarity=0.064 Sum_probs=59.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHhh---cC-CHhH
Q 004114 405 CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS--PLRVSTYNGILKMYSECDSMDDAFSVFSNMT---ER-DLTS 478 (773)
Q Consensus 405 Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~--~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~---~~-d~~t 478 (773)
++..+..+...|+..+ .|++..++.+++.+..... ..+... =.++.+.+++.+.. .+ ....
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------It~~~~~e~l~~~~~~ydk~gd~h 258 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------ITLAIAEESIQQRAVLYDKEGDAH 258 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------ccHHHHHHHHHHhhhhcccCCCCC
Confidence 4556666666666543 7888888888887654211 000000 01222333332211 11 1123
Q ss_pred HHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 479 WDTMITGFA---KNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 479 yn~LI~ay~---~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
| -+|+++. +.++++.|+..+.+|.+.|..|..+.=..++.|.-..|.
T Consensus 259 y-d~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigl 308 (725)
T PRK13341 259 F-DTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGL 308 (725)
T ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 3 2333333 467899999999999999988876655555555434443
No 433
>PF15469 Sec5: Exocyst complex component Sec5
Probab=21.03 E-value=8.1e+02 Score=24.19 Aligned_cols=58 Identities=9% Similarity=0.130 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKD 540 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~ 540 (773)
..|..++..-.+......|+.++++.+- ....-.-|.-|.+.|+++.+...|.+...-
T Consensus 58 ~~~~pll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 58 SVFKPLLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 3444455555555556666666666543 233345567777888888888777766543
No 434
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=20.98 E-value=5.7e+02 Score=26.29 Aligned_cols=97 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-----------------
Q 004114 511 DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM----------------- 573 (773)
Q Consensus 511 ~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M----------------- 573 (773)
....+.|+..|.-.|+++.|.++|.-+.+.-++.... .|..=++.+.+.+.-....++++.|
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~-~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~ 119 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRS-LWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRR 119 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHh-cchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhh
Q ss_pred -----------CCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 574 -----------PMEPDVDV---WEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 574 -----------~~~Pd~~t---y~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
...|...+ |..|+..-.+...++.+.++.++|.++
T Consensus 120 ~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~El 168 (199)
T PF04090_consen 120 IIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDEL 168 (199)
T ss_pred cccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
No 435
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.81 E-value=8.8e+02 Score=28.48 Aligned_cols=91 Identities=11% Similarity=0.077 Sum_probs=55.3
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHH
Q 004114 402 EKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDT 481 (773)
Q Consensus 402 ~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~ 481 (773)
...|+..+......++.. ..|++..|+.+++++...+- ...++..+.+++. -.+......
T Consensus 194 ~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~~--~~it~~~V~~~lg----------------~~~~~~~~~ 253 (484)
T PRK14956 194 KIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFTD--SKLTGVKIRKMIG----------------YHGIEFLTS 253 (484)
T ss_pred HHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhCC--CCcCHHHHHHHhC----------------CCCHHHHHH
Confidence 346777777766555533 45889999999888664321 1123333332221 124444555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 004114 482 MITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ 512 (773)
Q Consensus 482 LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~ 512 (773)
++.+....+....|+.++++|.+.|..|...
T Consensus 254 l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 254 FIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 6666555555678999999999999877644
No 436
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=20.65 E-value=2.8e+02 Score=31.61 Aligned_cols=38 Identities=16% Similarity=0.028 Sum_probs=24.3
Q ss_pred HHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHH
Q 004114 397 VLGLLEKQCISVDLP---TFSQLMQACGDAKALEEAKAVHE 434 (773)
Q Consensus 397 lf~~M~~~Gv~Pd~~---ty~~LL~a~~~~g~le~A~~l~~ 434 (773)
+++.+.+.|+.|+.. +-.+++.|+...+..++..+++.
T Consensus 101 v~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~ 141 (391)
T cd07229 101 VVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLD 141 (391)
T ss_pred HHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHh
Confidence 456667788888764 34556666555566666666654
No 437
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=20.38 E-value=7.7e+02 Score=27.28 Aligned_cols=73 Identities=11% Similarity=0.198 Sum_probs=54.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHh----------CCCHHH
Q 004114 496 VDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGS----------TGYLDE 565 (773)
Q Consensus 496 l~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r----------~G~l~e 565 (773)
.+||+.|++.++.|.-..|.-+...++..=.+.+.+.+|+.+..+ ..-|..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 578888899999999988888877788888888999999988664 2225555555553 467777
Q ss_pred HHHHHHhCC
Q 004114 566 ALEFIEKMP 574 (773)
Q Consensus 566 A~~lf~~M~ 574 (773)
.++++..-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777776643
No 438
>COG5210 GTPase-activating protein [General function prediction only]
Probab=20.28 E-value=5.5e+02 Score=30.04 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 004114 428 EAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE 473 (773)
Q Consensus 428 ~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~ 473 (773)
..-+++..|.+.|+.....++..++.++.++-.++.|.++++.+--
T Consensus 360 ~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~ 405 (496)
T COG5210 360 LDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFL 405 (496)
T ss_pred HHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445677777777777777777777777777777777777776653
No 439
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.19 E-value=1.8e+03 Score=27.96 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004114 378 TLEQLDGLVKEGKVKEAIEVLGLLEK 403 (773)
Q Consensus 378 ~~~LI~a~~~~G~~~eAl~lf~~M~~ 403 (773)
+.+||.-|...|..++|+++|.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 34588888888888888888888765
Done!