Query 004114
Match_columns 773
No_of_seqs 503 out of 3988
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 14:43:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.3E-28 4.6E-33 282.5 24.1 198 394-592 9-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.6E-28 5.6E-33 281.8 24.1 180 380-560 31-223 (501)
3 2xpi_A Anaphase-promoting comp 99.9 4.8E-21 1.7E-25 220.0 37.4 279 346-627 146-571 (597)
4 2xpi_A Anaphase-promoting comp 99.9 6E-21 2.1E-25 219.2 31.9 285 329-618 286-589 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.7 3.2E-15 1.1E-19 162.6 35.6 267 349-621 100-381 (388)
6 2y4t_A DNAJ homolog subfamily 99.7 2.9E-15 9.8E-20 165.4 32.9 267 347-621 57-371 (450)
7 3spa_A Mtrpol, DNA-directed RN 99.7 3.8E-18 1.3E-22 203.7 8.7 157 409-571 126-305 (1134)
8 1w3b_A UDP-N-acetylglucosamine 99.7 1.3E-14 4.5E-19 157.8 34.9 271 347-625 64-358 (388)
9 3spa_A Mtrpol, DNA-directed RN 99.7 7.2E-18 2.5E-22 201.4 9.4 151 442-593 124-286 (1134)
10 2y4t_A DNAJ homolog subfamily 99.7 2.4E-14 8.2E-19 157.9 34.0 271 349-626 25-349 (450)
11 3hym_B Cell division cycle pro 99.6 3.2E-13 1.1E-17 141.5 28.4 267 347-616 19-307 (330)
12 2gw1_A Mitochondrial precursor 99.6 1.3E-12 4.4E-17 145.9 30.9 221 388-613 202-449 (514)
13 3ieg_A DNAJ homolog subfamily 99.6 1E-11 3.5E-16 131.0 34.9 274 331-613 19-340 (359)
14 3ieg_A DNAJ homolog subfamily 99.6 5.7E-12 2E-16 133.0 32.8 273 350-627 3-327 (359)
15 4eqf_A PEX5-related protein; a 99.5 1.2E-12 4.1E-17 140.8 22.8 231 378-612 68-314 (365)
16 3mkr_A Coatomer subunit epsilo 99.5 6.7E-12 2.3E-16 133.2 27.9 224 381-614 40-270 (291)
17 3hym_B Cell division cycle pro 99.5 1E-11 3.5E-16 129.9 28.8 234 378-616 25-273 (330)
18 1fch_A Peroxisomal targeting s 99.5 2.7E-12 9.1E-17 137.3 23.9 233 376-612 65-318 (368)
19 4eqf_A PEX5-related protein; a 99.5 1.2E-12 4.2E-17 140.7 20.3 251 350-604 65-352 (365)
20 1fch_A Peroxisomal targeting s 99.5 3.3E-12 1.1E-16 136.6 22.6 250 350-604 64-355 (368)
21 2gw1_A Mitochondrial precursor 99.5 1.5E-11 5.3E-16 137.2 28.0 280 329-613 20-406 (514)
22 3cv0_A Peroxisome targeting si 99.4 1.3E-11 4.5E-16 129.0 24.1 218 381-603 61-310 (327)
23 3cv0_A Peroxisome targeting si 99.4 1.4E-11 4.7E-16 128.8 23.5 230 377-611 23-272 (327)
24 1b89_A Protein (clathrin heavy 99.4 1.1E-13 3.6E-18 154.7 7.3 218 349-592 31-254 (449)
25 3uq3_A Heat shock protein STI1 99.4 2.1E-11 7.1E-16 122.9 22.1 218 379-609 9-237 (258)
26 3fp2_A TPR repeat-containing p 99.4 1.8E-10 6.2E-15 129.6 31.7 219 389-614 216-463 (537)
27 2ho1_A Type 4 fimbrial biogene 99.4 9.2E-11 3.1E-15 118.7 25.5 195 416-613 43-243 (252)
28 1b89_A Protein (clathrin heavy 99.4 1.4E-13 4.9E-18 153.6 5.0 232 362-622 15-250 (449)
29 3mkr_A Coatomer subunit epsilo 99.4 2.4E-11 8.2E-16 128.9 21.5 220 382-616 6-237 (291)
30 1xnf_A Lipoprotein NLPI; TPR, 99.4 7.5E-11 2.6E-15 120.4 24.2 223 386-614 16-250 (275)
31 2vq2_A PILW, putative fimbrial 99.4 1.8E-10 6.2E-15 113.4 25.8 202 410-614 8-217 (225)
32 3u4t_A TPR repeat-containing p 99.3 1.1E-10 3.8E-15 119.3 22.9 239 379-622 7-264 (272)
33 2q7f_A YRRB protein; TPR, prot 99.3 8.5E-11 2.9E-15 117.7 20.6 208 411-622 24-236 (243)
34 3fp2_A TPR repeat-containing p 99.3 7.2E-10 2.5E-14 124.7 29.9 231 381-615 249-498 (537)
35 2ho1_A Type 4 fimbrial biogene 99.3 5E-10 1.7E-14 113.3 24.3 197 380-581 42-244 (252)
36 2vq2_A PILW, putative fimbrial 99.3 9.5E-10 3.3E-14 108.2 24.8 201 380-585 13-221 (225)
37 1ouv_A Conserved hypothetical 99.3 4E-09 1.4E-13 108.8 29.2 219 381-613 12-256 (273)
38 3uq3_A Heat shock protein STI1 99.2 1.8E-09 6.2E-14 108.5 23.8 211 351-573 6-233 (258)
39 2pl2_A Hypothetical conserved 99.2 1.2E-09 4.2E-14 110.0 22.2 187 381-573 11-211 (217)
40 2q7f_A YRRB protein; TPR, prot 99.2 8E-10 2.7E-14 110.5 20.1 199 381-584 29-232 (243)
41 2ond_A Cleavage stimulation fa 99.2 5E-09 1.7E-13 111.0 25.8 218 392-613 33-275 (308)
42 2pl2_A Hypothetical conserved 99.2 1.2E-09 4E-14 110.1 19.0 193 407-605 2-211 (217)
43 2h6f_A Protein farnesyltransfe 99.1 3.1E-09 1.1E-13 117.5 23.3 231 381-617 103-357 (382)
44 3u4t_A TPR repeat-containing p 99.1 8.8E-09 3E-13 105.1 23.9 230 353-585 6-261 (272)
45 3nf1_A KLC 1, kinesin light ch 99.1 1.1E-09 3.9E-14 113.2 16.0 231 381-611 33-310 (311)
46 1ouv_A Conserved hypothetical 99.1 7.1E-08 2.4E-12 99.3 28.8 212 349-573 5-248 (273)
47 1xnf_A Lipoprotein NLPI; TPR, 99.1 5.4E-09 1.8E-13 106.5 19.2 214 380-602 48-269 (275)
48 4a1s_A PINS, partner of inscut 99.1 3.2E-09 1.1E-13 115.5 18.2 257 354-610 52-374 (411)
49 3ro2_A PINS homolog, G-protein 99.0 8.2E-09 2.8E-13 107.0 19.6 256 355-610 10-334 (338)
50 3as5_A MAMA; tetratricopeptide 99.0 2E-08 6.7E-13 95.2 19.5 165 446-613 9-178 (186)
51 3sf4_A G-protein-signaling mod 99.0 1.2E-08 4E-13 109.8 20.2 261 348-608 7-336 (406)
52 3vtx_A MAMA; tetratricopeptide 99.0 2.7E-08 9.4E-13 95.9 20.1 166 444-612 4-174 (184)
53 4a1s_A PINS, partner of inscut 98.9 1E-08 3.5E-13 111.4 16.2 229 380-609 53-333 (411)
54 3ro2_A PINS homolog, G-protein 98.9 1.9E-08 6.6E-13 104.2 17.2 228 381-609 11-293 (338)
55 2xm6_A Protein corresponding t 98.9 1.9E-06 6.5E-11 97.1 34.4 207 388-607 164-395 (490)
56 3vtx_A MAMA; tetratricopeptide 98.9 1.8E-07 6.2E-12 90.1 21.5 160 410-573 5-167 (184)
57 3sf4_A G-protein-signaling mod 98.9 4.5E-08 1.6E-12 105.2 18.5 228 381-609 15-297 (406)
58 2ooe_A Cleavage stimulation fa 98.9 1.4E-07 4.8E-12 107.5 23.3 216 392-611 255-495 (530)
59 3edt_B KLC 2, kinesin light ch 98.9 2.5E-08 8.5E-13 101.2 15.2 165 322-504 15-197 (283)
60 2h6f_A Protein farnesyltransfe 98.9 2.1E-07 7E-12 102.9 23.5 233 351-590 98-364 (382)
61 2xm6_A Protein corresponding t 98.9 3.8E-06 1.3E-10 94.6 34.4 248 349-609 38-326 (490)
62 4abn_A Tetratricopeptide repea 98.9 4E-08 1.4E-12 111.2 18.1 206 390-601 83-314 (474)
63 3ulq_A Response regulator aspa 98.9 1.1E-07 3.6E-12 103.4 20.7 229 381-609 109-369 (383)
64 3as5_A MAMA; tetratricopeptide 98.9 1.5E-07 5.1E-12 89.0 19.2 157 380-539 13-172 (186)
65 3edt_B KLC 2, kinesin light ch 98.9 7.5E-08 2.6E-12 97.6 18.2 218 391-608 24-281 (283)
66 2ond_A Cleavage stimulation fa 98.8 5.7E-07 1.9E-11 95.1 24.7 183 387-573 69-267 (308)
67 3nf1_A KLC 1, kinesin light ch 98.8 1.1E-08 3.8E-13 105.8 10.7 191 381-573 75-304 (311)
68 4abn_A Tetratricopeptide repea 98.8 7.6E-08 2.6E-12 108.9 18.5 190 426-620 84-299 (474)
69 4g1t_A Interferon-induced prot 98.8 2.2E-06 7.6E-11 94.8 29.8 284 323-613 66-406 (472)
70 1xi4_A Clathrin heavy chain; a 98.8 2E-06 6.9E-11 106.6 31.5 231 348-605 1103-1339(1630)
71 1xi4_A Clathrin heavy chain; a 98.8 6.6E-07 2.2E-11 110.8 27.3 224 362-614 1088-1315(1630)
72 4i17_A Hypothetical protein; T 98.8 3.9E-07 1.3E-11 91.1 19.5 196 408-615 5-216 (228)
73 3q15_A PSP28, response regulat 98.7 1E-06 3.6E-11 95.5 24.1 225 383-608 109-365 (378)
74 2ooe_A Cleavage stimulation fa 98.7 2.2E-06 7.5E-11 97.6 27.1 107 331-438 28-158 (530)
75 4g1t_A Interferon-induced prot 98.7 5.2E-07 1.8E-11 99.9 20.5 286 323-614 109-465 (472)
76 1hz4_A MALT regulatory protein 98.7 1.8E-06 6.1E-11 92.9 23.9 249 357-608 21-322 (373)
77 1qqe_A Vesicular transport pro 98.7 3.1E-07 1E-11 96.6 17.4 96 478-573 119-225 (292)
78 1hz4_A MALT regulatory protein 98.7 8.3E-06 2.8E-10 87.6 28.7 227 382-608 21-282 (373)
79 2fo7_A Synthetic consensus TPR 98.7 5.5E-07 1.9E-11 80.0 16.1 130 479-611 4-135 (136)
80 1qqe_A Vesicular transport pro 98.6 2E-06 6.8E-11 90.3 20.6 205 365-577 32-271 (292)
81 4gyw_A UDP-N-acetylglucosamine 98.6 5.4E-07 1.9E-11 107.5 18.0 161 445-610 9-176 (723)
82 2fo7_A Synthetic consensus TPR 98.6 1.3E-06 4.4E-11 77.6 16.2 125 412-538 3-130 (136)
83 4gyw_A UDP-N-acetylglucosamine 98.5 2.6E-06 8.9E-11 101.6 20.5 154 412-571 11-169 (723)
84 4i17_A Hypothetical protein; T 98.5 4.9E-06 1.7E-10 82.9 19.2 190 378-579 10-213 (228)
85 3ulq_A Response regulator aspa 98.5 1E-05 3.5E-10 87.6 22.1 214 356-573 109-365 (383)
86 3mv2_B Coatomer subunit epsilo 98.5 3.7E-06 1.3E-10 90.0 17.3 177 429-613 85-287 (310)
87 3mv2_B Coatomer subunit epsilo 98.5 2.5E-06 8.6E-11 91.3 16.0 189 381-578 76-285 (310)
88 3qky_A Outer membrane assembly 98.4 7.6E-06 2.6E-10 83.6 18.8 184 409-614 14-230 (261)
89 4e6h_A MRNA 3'-END-processing 98.4 1.5E-05 5.2E-10 94.2 22.9 218 392-614 326-576 (679)
90 2pzi_A Probable serine/threoni 98.3 8.6E-06 2.9E-10 96.4 18.0 187 421-613 402-607 (681)
91 2ifu_A Gamma-SNAP; membrane fu 98.3 1.3E-05 4.3E-10 84.8 16.9 185 414-600 40-253 (307)
92 3q15_A PSP28, response regulat 98.2 5.6E-05 1.9E-09 81.8 21.0 212 358-573 109-362 (378)
93 3dra_A Protein farnesyltransfe 98.2 0.00041 1.4E-08 74.1 27.4 229 381-615 38-295 (306)
94 3qky_A Outer membrane assembly 98.2 3.7E-05 1.3E-09 78.4 18.4 156 380-539 20-223 (261)
95 3qou_A Protein YBBN; thioredox 98.2 3.4E-05 1.2E-09 80.9 18.4 161 409-571 116-279 (287)
96 2yhc_A BAMD, UPF0169 lipoprote 98.2 4E-05 1.4E-09 76.8 17.7 182 410-612 4-217 (225)
97 2vsy_A XCC0866; transferase, g 98.2 2.7E-05 9.2E-10 89.4 18.0 145 424-572 3-153 (568)
98 2ifu_A Gamma-SNAP; membrane fu 98.2 4.5E-05 1.5E-09 80.5 18.3 195 363-568 29-253 (307)
99 3qou_A Protein YBBN; thioredox 98.2 2.3E-05 7.8E-10 82.2 15.9 161 442-606 114-282 (287)
100 2pzi_A Probable serine/threoni 98.2 3.1E-05 1.1E-09 91.6 18.5 182 386-574 402-603 (681)
101 2r5s_A Uncharacterized protein 98.2 2.5E-05 8.4E-10 75.2 14.6 154 448-606 9-171 (176)
102 1hh8_A P67PHOX, NCF-2, neutrop 98.2 6.2E-05 2.1E-09 73.6 17.6 91 448-539 9-99 (213)
103 3urz_A Uncharacterized protein 98.2 4.8E-05 1.6E-09 75.5 16.8 177 381-585 10-196 (208)
104 3u3w_A Transcriptional activat 98.1 0.00018 6.3E-09 75.0 21.1 202 335-538 31-264 (293)
105 1hh8_A P67PHOX, NCF-2, neutrop 98.1 3.4E-05 1.2E-09 75.5 14.4 130 477-612 7-154 (213)
106 3urz_A Uncharacterized protein 98.1 4.3E-05 1.5E-09 75.8 15.3 127 480-612 58-190 (208)
107 3u3w_A Transcriptional activat 98.1 0.00054 1.8E-08 71.3 24.2 202 398-608 34-266 (293)
108 3rjv_A Putative SEL1 repeat pr 98.1 0.00013 4.6E-09 72.6 18.5 170 393-572 4-193 (212)
109 2r5s_A Uncharacterized protein 98.1 2.2E-05 7.7E-10 75.5 12.3 156 380-538 11-171 (176)
110 3e4b_A ALGK; tetratricopeptide 98.1 0.00042 1.4E-08 77.6 24.4 248 352-609 108-388 (452)
111 2qfc_A PLCR protein; TPR, HTH, 98.1 0.0002 6.7E-09 74.7 20.2 156 380-535 80-261 (293)
112 2vsy_A XCC0866; transferase, g 98.1 9.3E-05 3.2E-09 84.9 19.3 150 388-540 2-157 (568)
113 3gw4_A Uncharacterized protein 98.1 0.00013 4.4E-09 70.3 17.3 95 478-572 68-172 (203)
114 2yhc_A BAMD, UPF0169 lipoprote 98.1 0.00017 5.7E-09 72.3 18.3 177 379-573 8-210 (225)
115 2qfc_A PLCR protein; TPR, HTH, 98.0 0.00017 6E-09 75.1 18.1 161 447-607 77-265 (293)
116 3e4b_A ALGK; tetratricopeptide 97.9 7.9E-05 2.7E-09 83.5 14.8 262 329-606 17-314 (452)
117 3gw4_A Uncharacterized protein 97.9 0.00015 5.2E-09 69.8 14.7 154 385-539 2-175 (203)
118 1na0_A Designed protein CTPR3; 97.9 0.00031 1E-08 61.2 15.3 92 412-504 11-105 (125)
119 1a17_A Serine/threonine protei 97.9 0.00019 6.4E-09 66.6 14.5 14 591-604 129-142 (166)
120 1na0_A Designed protein CTPR3; 97.9 0.00051 1.7E-08 59.8 16.3 94 445-539 9-105 (125)
121 3rjv_A Putative SEL1 repeat pr 97.8 0.0014 4.6E-08 65.2 20.7 151 381-540 24-197 (212)
122 3dss_A Geranylgeranyl transfer 97.8 0.0031 1.1E-07 68.0 24.5 235 375-616 29-312 (331)
123 4ga2_A E3 SUMO-protein ligase 97.8 5.3E-05 1.8E-09 71.3 9.4 22 482-503 37-58 (150)
124 1a17_A Serine/threonine protei 97.8 0.00032 1.1E-08 65.0 14.6 125 445-572 13-142 (166)
125 2lni_A Stress-induced-phosphop 97.7 0.00047 1.6E-08 61.2 13.4 92 446-538 17-111 (133)
126 3q7a_A Farnesyltransferase alp 97.7 0.0078 2.7E-07 65.3 25.5 218 389-612 68-336 (349)
127 2vyi_A SGTA protein; chaperone 97.7 0.00064 2.2E-08 59.7 14.1 113 478-593 14-128 (131)
128 4ga2_A E3 SUMO-protein ligase 97.7 0.0001 3.5E-09 69.4 9.2 83 448-532 34-120 (150)
129 2vyi_A SGTA protein; chaperone 97.7 0.0013 4.3E-08 57.7 15.8 109 381-491 18-129 (131)
130 2e2e_A Formate-dependent nitri 97.7 0.00028 9.6E-09 67.2 12.2 119 385-505 20-144 (177)
131 3gyz_A Chaperone protein IPGC; 97.7 0.00054 1.9E-08 65.1 13.5 89 415-504 41-132 (151)
132 4b4t_Q 26S proteasome regulato 97.7 0.0011 3.7E-08 72.2 17.8 193 381-573 10-242 (434)
133 2e2e_A Formate-dependent nitri 97.6 0.00069 2.4E-08 64.4 14.1 118 421-540 21-144 (177)
134 4f3v_A ESX-1 secretion system 97.6 0.0004 1.4E-08 73.2 13.2 122 448-573 105-234 (282)
135 4gco_A Protein STI-1; structur 97.6 0.00045 1.5E-08 63.1 12.0 101 513-615 15-117 (126)
136 3gyz_A Chaperone protein IPGC; 97.6 0.002 6.7E-08 61.2 16.7 99 445-548 36-138 (151)
137 4f3v_A ESX-1 secretion system 97.6 0.00066 2.2E-08 71.6 14.5 185 422-611 18-240 (282)
138 2lni_A Stress-induced-phosphop 97.6 0.0013 4.6E-08 58.1 14.0 90 381-472 22-111 (133)
139 2fbn_A 70 kDa peptidylprolyl i 97.5 0.00074 2.5E-08 65.7 13.1 116 355-471 9-148 (198)
140 4gco_A Protein STI-1; structur 97.5 0.0019 6.5E-08 58.8 14.6 90 414-504 17-109 (126)
141 1p5q_A FKBP52, FK506-binding p 97.5 0.002 6.8E-08 69.1 17.0 124 412-537 149-291 (336)
142 2c2l_A CHIP, carboxy terminus 97.5 0.0051 1.8E-07 63.9 19.2 189 409-607 3-198 (281)
143 1p5q_A FKBP52, FK506-binding p 97.5 0.0021 7.3E-08 68.9 16.6 123 381-504 153-293 (336)
144 1elr_A TPR2A-domain of HOP; HO 97.5 0.0016 5.4E-08 57.2 13.0 93 412-505 6-108 (131)
145 3ro3_A PINS homolog, G-protein 97.5 0.00098 3.4E-08 60.5 11.9 56 448-503 12-76 (164)
146 4e6h_A MRNA 3'-END-processing 97.4 0.0053 1.8E-07 72.5 20.9 188 382-573 350-567 (679)
147 2vgx_A Chaperone SYCD; alterna 97.4 0.0012 4E-08 61.9 12.4 89 448-537 24-115 (148)
148 1elw_A TPR1-domain of HOP; HOP 97.4 0.0009 3.1E-08 57.6 10.8 94 477-573 5-98 (118)
149 3upv_A Heat shock protein STI1 97.4 0.0032 1.1E-07 56.1 14.8 91 413-504 7-100 (126)
150 4b4t_Q 26S proteasome regulato 97.4 0.0041 1.4E-07 67.5 18.5 190 418-607 12-244 (434)
151 1elr_A TPR2A-domain of HOP; HO 97.4 0.0008 2.7E-08 59.2 10.2 58 447-504 6-66 (131)
152 3ro3_A PINS homolog, G-protein 97.4 0.0006 2.1E-08 62.0 9.6 132 477-608 10-158 (164)
153 2kck_A TPR repeat; tetratricop 97.4 0.00071 2.4E-08 57.8 9.1 93 517-611 12-109 (112)
154 3sz7_A HSC70 cochaperone (SGT) 97.3 0.00084 2.9E-08 63.2 10.3 102 513-616 13-116 (164)
155 3q49_B STIP1 homology and U bo 97.3 0.0045 1.5E-07 55.5 14.7 94 409-503 8-104 (137)
156 1elw_A TPR1-domain of HOP; HOP 97.3 0.0048 1.6E-07 52.9 14.2 94 445-539 4-100 (118)
157 2fbn_A 70 kDa peptidylprolyl i 97.3 0.00048 1.6E-08 67.1 8.5 143 452-596 11-173 (198)
158 2vgx_A Chaperone SYCD; alterna 97.3 0.0011 3.8E-08 62.2 10.7 93 411-504 22-117 (148)
159 2xcb_A PCRH, regulatory protei 97.3 0.00094 3.2E-08 61.6 10.1 92 478-572 20-111 (142)
160 1wao_1 Serine/threonine protei 97.3 0.002 6.7E-08 72.8 14.6 115 420-535 16-134 (477)
161 3sz7_A HSC70 cochaperone (SGT) 97.3 0.0031 1E-07 59.3 13.7 92 412-504 13-107 (164)
162 2kck_A TPR repeat; tetratricop 97.3 0.0021 7.3E-08 54.8 11.0 90 449-538 10-104 (112)
163 2c2l_A CHIP, carboxy terminus 97.2 0.0013 4.6E-08 68.4 11.4 162 444-613 3-169 (281)
164 2dba_A Smooth muscle cell asso 97.2 0.008 2.7E-07 54.2 15.4 93 410-504 28-127 (148)
165 2uy1_A Cleavage stimulation fa 97.2 0.02 6.8E-07 64.9 21.7 201 392-606 196-411 (493)
166 3q49_B STIP1 homology and U bo 97.2 0.0061 2.1E-07 54.6 14.2 94 444-538 8-104 (137)
167 4gcn_A Protein STI-1; structur 97.2 0.0064 2.2E-07 55.2 14.2 91 413-504 11-111 (127)
168 2xcb_A PCRH, regulatory protei 97.2 0.0045 1.6E-07 56.9 13.4 86 417-503 25-113 (142)
169 2dba_A Smooth muscle cell asso 97.2 0.0084 2.9E-07 54.0 15.0 95 444-539 27-127 (148)
170 3upv_A Heat shock protein STI1 97.2 0.0059 2E-07 54.4 13.3 89 447-537 6-98 (126)
171 3dra_A Protein farnesyltransfe 97.1 0.023 7.7E-07 60.5 19.9 196 387-586 79-300 (306)
172 4gcn_A Protein STI-1; structur 97.0 0.0078 2.7E-07 54.6 13.0 94 446-539 9-111 (127)
173 3n71_A Histone lysine methyltr 96.9 0.0034 1.2E-07 71.3 11.7 91 381-471 315-419 (490)
174 1hxi_A PEX5, peroxisome target 96.9 0.0028 9.4E-08 57.2 8.8 92 519-612 25-118 (121)
175 1hxi_A PEX5, peroxisome target 96.9 0.0084 2.9E-07 53.9 12.0 90 381-472 23-112 (121)
176 1wao_1 Serine/threonine protei 96.9 0.0044 1.5E-07 70.0 12.2 116 383-500 14-134 (477)
177 2xev_A YBGF; tetratricopeptide 96.9 0.0084 2.9E-07 53.1 11.6 64 549-612 41-109 (129)
178 3mkq_A Coatomer beta'-subunit; 96.8 0.058 2E-06 63.5 21.9 93 362-472 611-708 (814)
179 2if4_A ATFKBP42; FKBP-like, al 96.8 0.0037 1.3E-07 67.1 10.3 149 445-612 179-332 (338)
180 2xev_A YBGF; tetratricopeptide 96.8 0.03 1E-06 49.4 14.5 59 479-539 42-104 (129)
181 1kt0_A FKBP51, 51 kDa FK506-bi 96.8 0.013 4.5E-07 65.5 14.5 113 381-494 274-403 (457)
182 1kt0_A FKBP51, 51 kDa FK506-bi 96.7 0.017 5.8E-07 64.6 15.2 137 410-567 268-405 (457)
183 3k9i_A BH0479 protein; putativ 96.6 0.002 6.7E-08 57.2 5.5 59 478-537 29-87 (117)
184 3k9i_A BH0479 protein; putativ 96.6 0.0031 1E-07 56.0 6.6 84 388-472 3-88 (117)
185 1ihg_A Cyclophilin 40; ppiase 96.6 0.015 5.3E-07 63.2 13.5 136 410-566 223-360 (370)
186 3dss_A Geranylgeranyl transfer 96.6 0.086 2.9E-06 56.7 18.7 188 421-612 40-271 (331)
187 3rkv_A Putative peptidylprolyl 96.5 0.022 7.6E-07 53.1 12.3 61 445-505 63-126 (162)
188 3n71_A Histone lysine methyltr 96.4 0.0034 1.1E-07 71.4 7.1 132 323-472 324-462 (490)
189 1ihg_A Cyclophilin 40; ppiase 96.3 0.025 8.5E-07 61.6 13.0 134 376-531 224-361 (370)
190 3mkq_A Coatomer beta'-subunit; 96.3 0.13 4.6E-06 60.4 20.2 156 383-574 607-763 (814)
191 1klx_A Cysteine rich protein B 96.3 0.032 1.1E-06 51.5 11.7 110 389-506 9-127 (138)
192 2if4_A ATFKBP42; FKBP-like, al 96.2 0.014 4.8E-07 62.5 10.2 137 381-538 185-326 (338)
193 1dce_A Protein (RAB geranylger 96.2 0.21 7.1E-06 57.6 20.3 154 461-617 45-230 (567)
194 1dce_A Protein (RAB geranylger 96.1 0.24 8.1E-06 57.1 20.1 136 381-520 34-187 (567)
195 3rkv_A Putative peptidylprolyl 96.1 0.06 2.1E-06 50.1 12.6 65 549-613 65-131 (162)
196 2hr2_A Hypothetical protein; a 95.9 0.016 5.6E-07 55.6 7.8 64 549-612 59-135 (159)
197 2l6j_A TPR repeat-containing p 95.8 0.0098 3.3E-07 51.0 5.4 59 413-472 7-65 (111)
198 2uy1_A Cleavage stimulation fa 95.8 0.63 2.1E-05 52.5 21.7 257 347-613 44-354 (493)
199 2hr2_A Hypothetical protein; a 95.7 0.061 2.1E-06 51.7 10.8 61 478-538 59-129 (159)
200 2kat_A Uncharacterized protein 95.6 0.095 3.3E-06 45.6 10.9 78 393-472 3-80 (115)
201 2l6j_A TPR repeat-containing p 95.5 0.048 1.7E-06 46.4 8.7 59 478-537 6-64 (111)
202 2kat_A Uncharacterized protein 95.5 0.033 1.1E-06 48.7 7.7 75 429-504 4-81 (115)
203 3q7a_A Farnesyltransferase alp 95.4 0.93 3.2E-05 48.9 20.2 166 424-593 68-256 (349)
204 1klx_A Cysteine rich protein B 95.4 0.12 4.1E-06 47.5 11.5 110 423-540 8-126 (138)
205 1na3_A Designed protein CTPR2; 94.9 0.27 9.3E-06 40.0 11.1 26 478-503 45-70 (91)
206 1na3_A Designed protein CTPR2; 94.7 0.24 8.1E-06 40.3 10.2 64 476-540 9-72 (91)
207 3qww_A SET and MYND domain-con 94.5 0.076 2.6E-06 59.2 8.6 82 422-503 310-409 (433)
208 3ma5_A Tetratricopeptide repea 94.4 0.29 9.8E-06 41.9 10.5 61 410-471 7-67 (100)
209 3ma5_A Tetratricopeptide repea 94.3 0.14 4.7E-06 43.9 8.2 62 475-537 6-67 (100)
210 3qwp_A SET and MYND domain-con 94.3 0.17 5.9E-06 56.2 11.1 90 381-470 293-396 (429)
211 3ly7_A Transcriptional activat 94.2 0.32 1.1E-05 52.9 12.5 72 544-615 274-346 (372)
212 3qwp_A SET and MYND domain-con 94.2 0.24 8E-06 55.1 11.8 85 419-503 296-398 (429)
213 1zu2_A Mitochondrial import re 93.8 0.14 4.7E-06 49.1 7.7 93 425-520 17-133 (158)
214 3ly7_A Transcriptional activat 93.5 0.7 2.4E-05 50.3 13.5 136 407-549 191-345 (372)
215 3mkq_B Coatomer subunit alpha; 93.4 1.3 4.4E-05 43.1 13.9 129 453-605 13-141 (177)
216 3qww_A SET and MYND domain-con 93.1 0.1 3.5E-06 58.2 6.3 97 323-438 313-410 (433)
217 2kc7_A BFR218_protein; tetratr 92.4 0.59 2E-05 39.0 8.9 59 381-440 6-65 (99)
218 2kc7_A BFR218_protein; tetratr 91.1 0.49 1.7E-05 39.5 7.0 63 554-616 7-72 (99)
219 1zu2_A Mitochondrial import re 90.6 0.67 2.3E-05 44.3 8.0 113 385-505 12-147 (158)
220 1pc2_A Mitochondria fission pr 89.2 0.78 2.7E-05 43.6 7.1 72 545-616 30-108 (152)
221 2v5f_A Prolyl 4-hydroxylase su 87.2 2.1 7.3E-05 36.9 8.3 67 549-615 7-82 (104)
222 3mkq_B Coatomer subunit alpha; 86.6 24 0.00082 34.1 18.4 128 420-574 15-142 (177)
223 1pc2_A Mitochondria fission pr 86.2 5.6 0.00019 37.6 11.1 83 426-511 14-104 (152)
224 2ff4_A Probable regulatory pro 85.3 6.1 0.00021 42.9 12.7 129 408-551 110-249 (388)
225 1wy6_A Hypothetical protein ST 84.9 5.3 0.00018 37.3 9.7 59 382-441 98-156 (172)
226 4b4t_P 26S proteasome regulato 84.1 21 0.00071 39.5 16.5 185 389-573 30-244 (445)
227 1wy6_A Hypothetical protein ST 83.7 29 0.00098 32.5 14.3 84 457-543 73-156 (172)
228 3bee_A Putative YFRE protein; 83.0 6.9 0.00024 33.3 9.5 62 444-505 5-72 (93)
229 1nzn_A CGI-135 protein, fissio 81.7 5.2 0.00018 36.6 8.5 75 545-619 33-114 (126)
230 3bee_A Putative YFRE protein; 80.9 9.4 0.00032 32.4 9.5 65 408-473 4-71 (93)
231 3lvg_A Clathrin heavy chain 1; 80.6 0.041 1.4E-06 61.7 -7.1 162 447-629 85-252 (624)
232 2v5f_A Prolyl 4-hydroxylase su 79.8 8.5 0.00029 32.9 9.0 25 479-503 49-73 (104)
233 2wpv_A GET4, UPF0363 protein Y 79.3 67 0.0023 33.8 22.1 170 351-540 34-217 (312)
234 1v54_E Cytochrome C oxidase po 78.5 9 0.00031 33.8 8.4 74 491-575 25-98 (109)
235 3lpz_A GET4 (YOR164C homolog); 78.5 74 0.0025 33.8 23.3 67 352-423 37-107 (336)
236 1wdy_A 2-5A-dependent ribonucl 78.0 5.7 0.00019 39.5 8.4 178 381-574 42-243 (285)
237 4fhn_B Nucleoporin NUP120; pro 77.7 15 0.00052 45.6 13.7 143 380-530 817-990 (1139)
238 4gns_B Protein CSD3, chitin bi 76.9 12 0.0004 44.5 11.6 50 486-537 347-397 (754)
239 3u64_A Protein TP_0956; tetrat 75.6 11 0.00039 39.4 9.9 90 426-517 179-283 (301)
240 3u64_A Protein TP_0956; tetrat 75.3 18 0.00063 37.9 11.4 81 391-473 179-268 (301)
241 2ff4_A Probable regulatory pro 74.3 12 0.00041 40.5 10.3 58 414-472 175-232 (388)
242 3ltm_A Alpha-REP4; protein eng 73.9 55 0.0019 31.1 14.1 111 408-526 31-141 (211)
243 4b4t_P 26S proteasome regulato 73.7 58 0.002 35.8 15.9 182 424-605 30-244 (445)
244 4gns_B Protein CSD3, chitin bi 70.8 42 0.0014 39.8 14.4 55 519-575 345-399 (754)
245 2y69_E Cytochrome C oxidase su 69.3 18 0.00063 33.5 8.4 73 492-575 69-141 (152)
246 3ltm_A Alpha-REP4; protein eng 68.9 80 0.0027 29.9 15.3 145 442-596 30-174 (211)
247 3lpz_A GET4 (YOR164C homolog); 67.9 1.3E+02 0.0044 31.9 25.9 151 358-532 20-188 (336)
248 1nzn_A CGI-135 protein, fissio 66.5 53 0.0018 29.8 11.0 84 424-510 15-106 (126)
249 1v54_E Cytochrome C oxidase po 64.9 20 0.00067 31.6 7.3 62 391-453 26-87 (109)
250 1k1a_A B-cell lymphoma 3-encod 64.5 22 0.00076 34.3 9.0 27 382-408 13-39 (241)
251 2wpv_A GET4, UPF0363 protein Y 61.1 1.6E+02 0.0056 30.8 23.3 143 358-524 21-178 (312)
252 2p58_C Putative type III secre 60.4 35 0.0012 30.0 8.0 86 425-515 22-107 (116)
253 2uwj_G Type III export protein 58.7 33 0.0011 30.1 7.5 86 425-515 21-106 (115)
254 1y8m_A FIS1; mitochondria, unk 56.9 68 0.0023 29.9 10.0 73 545-617 37-115 (144)
255 4fhn_B Nucleoporin NUP120; pro 56.2 1.6E+02 0.0054 36.5 16.5 117 444-563 841-987 (1139)
256 4h7y_A Dual specificity protei 55.7 50 0.0017 31.2 8.9 37 473-510 10-52 (161)
257 4ady_A RPN2, 26S proteasome re 55.6 2E+02 0.007 34.9 16.5 132 457-594 502-643 (963)
258 4h7y_A Dual specificity protei 53.6 62 0.0021 30.6 9.2 18 444-461 12-29 (161)
259 3ltj_A Alpharep-4; protein eng 53.2 1.4E+02 0.0049 27.7 16.8 50 443-492 57-106 (201)
260 3o48_A Mitochondria fission 1 52.3 46 0.0016 30.6 8.0 69 553-621 46-120 (134)
261 1k1a_A B-cell lymphoma 3-encod 49.4 25 0.00084 33.9 6.3 150 416-572 12-172 (241)
262 3ltj_A Alpharep-4; protein eng 48.3 1.7E+02 0.0059 27.2 17.4 145 442-596 25-169 (201)
263 2y69_E Cytochrome C oxidase su 48.2 49 0.0017 30.7 7.3 62 391-453 69-130 (152)
264 3txn_A 26S proteasome regulato 47.2 3E+02 0.01 29.7 17.8 90 380-470 104-206 (394)
265 1wdy_A 2-5A-dependent ribonucl 45.2 27 0.00091 34.4 5.9 82 381-470 8-94 (285)
266 4b4t_R RPN7, 26S proteasome re 43.5 1.2E+02 0.0039 33.1 11.2 59 479-537 134-194 (429)
267 3eu9_A Huntingtin-interacting 42.9 17 0.00057 35.0 3.8 20 553-572 180-199 (240)
268 3ffl_A Anaphase-promoting comp 42.8 66 0.0023 30.7 7.7 123 439-575 12-150 (167)
269 1zbp_A Hypothetical protein VP 41.8 69 0.0024 33.0 8.2 123 483-612 4-133 (273)
270 2nsz_A Programmed cell death p 40.1 67 0.0023 29.0 7.2 63 448-510 10-77 (129)
271 3ffl_A Anaphase-promoting comp 38.7 2.6E+02 0.009 26.5 11.3 58 381-438 26-91 (167)
272 3jxi_A Vanilloid receptor-rela 38.4 39 0.0013 33.1 5.8 55 382-436 9-72 (260)
273 2d2s_A Exocyst complex compone 38.3 1.4E+02 0.0047 30.0 9.8 90 378-470 21-116 (235)
274 4ady_A RPN2, 26S proteasome re 36.7 5.2E+02 0.018 31.4 15.9 150 385-539 500-657 (963)
275 4b4t_R RPN7, 26S proteasome re 35.8 2.4E+02 0.0082 30.5 12.2 55 416-470 137-193 (429)
276 3eu9_A Huntingtin-interacting 34.8 73 0.0025 30.2 7.1 176 381-573 45-233 (240)
277 3mv2_A Coatomer subunit alpha; 33.9 1.3E+02 0.0046 31.6 9.1 51 562-612 185-240 (325)
278 2ion_A PDCD4, programmed cell 33.8 59 0.002 30.4 5.8 62 448-509 12-78 (152)
279 3aji_A 26S proteasome non-ATPa 33.3 89 0.003 29.7 7.4 15 384-398 12-26 (231)
280 1y8m_A FIS1; mitochondria, unk 32.7 2.2E+02 0.0074 26.4 9.3 70 508-578 36-109 (144)
281 3lvg_A Clathrin heavy chain 1; 31.8 1.9 6.5E-05 48.5 -5.6 205 351-567 55-324 (624)
282 2p1h_A APAF-1, apoptotic prote 31.0 1.7E+02 0.0058 24.4 7.9 62 430-495 25-86 (94)
283 3o48_A Mitochondria fission 1 30.9 1.4E+02 0.0048 27.4 7.6 70 506-578 35-110 (134)
284 3hra_A Ankyrin repeat family p 30.3 63 0.0022 30.0 5.6 17 453-469 77-93 (201)
285 3rjo_A Endoplasmic reticulum a 30.3 5.3E+02 0.018 27.5 15.7 152 412-573 199-370 (419)
286 2qx5_A Nucleoporin NIC96; mRNA 29.5 7.1E+02 0.024 28.7 16.2 20 558-577 549-568 (661)
287 3ljn_A Hypothetical protein; a 29.0 65 0.0022 33.4 5.9 18 453-470 89-106 (364)
288 3ljn_A Hypothetical protein; a 28.9 3.3E+02 0.011 27.8 11.5 85 355-443 22-114 (364)
289 1qsa_A Protein (soluble lytic 28.4 7.1E+02 0.024 28.4 24.4 247 351-607 73-347 (618)
290 1zbp_A Hypothetical protein VP 28.1 93 0.0032 32.0 6.6 51 521-573 7-57 (273)
291 3kea_A K1L; tropism, ANK repea 27.4 1.2E+02 0.0042 30.3 7.5 52 552-604 131-183 (285)
292 3esl_A Checkpoint serine/threo 27.3 3.9E+02 0.013 26.1 10.6 55 423-477 92-147 (202)
293 3ygs_P Procaspase 9; apoptosis 26.5 1.1E+02 0.0037 26.1 5.8 39 459-497 51-89 (97)
294 3kea_A K1L; tropism, ANK repea 26.1 85 0.0029 31.6 6.0 207 382-609 35-248 (285)
295 4fke_A Aminopeptidase N; zinc 25.3 6.2E+02 0.021 30.3 14.3 88 414-503 690-785 (909)
296 3hra_A Ankyrin repeat family p 23.9 76 0.0026 29.4 4.8 122 381-510 42-172 (201)
297 2dzn_A Probable 26S proteasome 23.7 83 0.0028 29.7 5.2 20 553-572 143-162 (228)
298 3b7b_A Euchromatic histone-lys 22.6 72 0.0024 30.5 4.4 80 382-470 15-99 (237)
299 1n11_A Ankyrin; clathrin, BAND 22.3 1.1E+02 0.0038 32.5 6.3 219 335-572 27-267 (437)
300 1bd8_A P19INK4D CDK4/6 inhibit 21.9 92 0.0031 27.5 4.8 14 558-571 109-122 (156)
301 1s6c_A KV4 potassium channel-i 20.4 4.6E+02 0.016 23.5 9.6 24 548-571 157-180 (183)
302 3eiq_C Programmed cell death p 20.3 2.7E+02 0.0092 29.7 8.7 67 447-513 219-290 (358)
303 2rfa_A Transient receptor pote 20.3 2E+02 0.0069 27.1 7.2 14 590-603 205-218 (232)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.3e-28 Score=282.51 Aligned_cols=198 Identities=15% Similarity=0.187 Sum_probs=133.5
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC---------hHH
Q 004114 394 AIEVLGLLEKQCISVDL-PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS---------MDD 463 (773)
Q Consensus 394 Al~lf~~M~~~Gv~Pd~-~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~---------l~e 463 (773)
+..+.++|.+.++.+.+ .+++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++++. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44455566666555443 35666777777777777777777777777777777777777777776554 566
Q ss_pred HHHHHHHhh----cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 464 AFSVFSNMT----ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 464 A~~lf~~M~----~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
|.++|++|. .||++|||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 777777776 3577777777777777777777777777777777777777777777777777777777777777765
Q ss_pred hcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc
Q 004114 540 DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM---PMEPDVDVWEKLMNLCRMH 592 (773)
Q Consensus 540 ~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M---~~~Pd~~ty~~LI~a~~~~ 592 (773)
. |+.||..||++||.+|++.|++++|.++|++| ++.|+..||+.|+..|+..
T Consensus 169 ~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 S-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp T-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred c-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 5 77777777777777777777777777777777 6677777777777777653
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.6e-28 Score=281.81 Aligned_cols=180 Identities=15% Similarity=0.212 Sum_probs=171.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHhCCCCCHHHHHH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKA---------LEEAKAVHEHVERLLSPLRVSTYNG 450 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~---------le~A~~l~~~m~k~G~~pd~~tyna 450 (773)
.+|++||+.|++++|+++|++|.+.|++||.+||++||.+|++.+. ++.|.++|++|.+.|+.||..||++
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~ 110 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN 110 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3688888888899999999999999999999999999999997654 7999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHhhc----CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 451 ILKMYSECDSMDDAFSVFSNMTE----RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 451 LI~ay~k~G~l~eA~~lf~~M~~----~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
||++|+++|++++|+++|++|.+ ||++|||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|+
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 99999999999999999999984 79999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC
Q 004114 527 VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560 (773)
Q Consensus 527 ~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~ 560 (773)
+++|.++|++|.+. |+.|+..||+.|++.|+..
T Consensus 191 ~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 191 ADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999876 9999999999999999863
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.90 E-value=4.8e-21 Score=219.99 Aligned_cols=279 Identities=9% Similarity=-0.023 Sum_probs=234.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHhhh-------------------------hccHHHHHHHHHHcCCHHHHHHHHHH
Q 004114 346 NIQNGMMASQVLNNCKHEDDFAEASRSSQ-------------------------NNGTLEQLDGLVKEGKVKEAIEVLGL 400 (773)
Q Consensus 346 l~pd~~~~n~LI~~y~k~g~~~~A~~v~~-------------------------~~~~~~LI~a~~~~G~~~eAl~lf~~ 400 (773)
..+++.+++.++.+|.++|++++|.+++. ...+..++.+|.+.|++++|+++|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46788899999999999999999998765 12234588889999999999999988
Q ss_pred HHHCCC----------------------------------------------------------------------CCCH
Q 004114 401 LEKQCI----------------------------------------------------------------------SVDL 410 (773)
Q Consensus 401 M~~~Gv----------------------------------------------------------------------~Pd~ 410 (773)
|.+.+. .++.
T Consensus 226 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 305 (597)
T 2xpi_A 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS 305 (597)
T ss_dssp HHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCH
T ss_pred HHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchH
Confidence 865431 1677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---------------------------------CCCHHHHHHHHHHHHh
Q 004114 411 PTFSQLMQACGDAKALEEAKAVHEHVERLLS---------------------------------PLRVSTYNGILKMYSE 457 (773)
Q Consensus 411 ~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~---------------------------------~pd~~tynaLI~ay~k 457 (773)
.++..++.++.+.|++++|.++|++|.+.+. +.+..+++.++.+|.+
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 8888888889999999999999988876532 3357788999999999
Q ss_pred CCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 004114 458 CDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
+|++++|+++|++|.+ .+..+|+.|+.+|.+.|++++|+++|++|.+.. ..+..+|..++.+|.+.|++++|.++|
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998863 368899999999999999999999999998764 347789999999999999999999999
Q ss_pred HHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004114 535 ESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-------PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 535 ~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-------~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
++|.+. .+.+..+|+.|+.+|.+.|++++|.++|++| +..|+ ..+|..+..+|.+.|++++|..+++.+
T Consensus 465 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 465 QSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999775 3446889999999999999999999999988 55787 789999999999999999999999999
Q ss_pred HHcCCCCc-------hHHHHcCCchhhhh
Q 004114 606 EQLDPSRL-------NEKSKAGLVPVNAS 627 (773)
Q Consensus 606 ~el~p~~~-------~~y~~aG~~~~~v~ 627 (773)
.++.|++. ..|...|.+.....
T Consensus 543 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 543 LLLSTNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999885 45667777764433
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.89 E-value=6e-21 Score=219.21 Aligned_cols=285 Identities=9% Similarity=-0.006 Sum_probs=245.0
Q ss_pred HHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHH
Q 004114 329 RQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLG 399 (773)
Q Consensus 329 ~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~ 399 (773)
+.++.+..++..+.+. .+++.++..++.+|.+.|++++|..++. ...+..++.+|.+.|++++|+++|+
T Consensus 286 g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3344444444433332 4899999999999999999999999753 2233458999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCH
Q 004114 400 LLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDL 476 (773)
Q Consensus 400 ~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~ 476 (773)
+|.+.. ..+..++..+..+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|++|.+ .+.
T Consensus 364 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 441 (597)
T 2xpi_A 364 DLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH 441 (597)
T ss_dssp HHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 998653 4578899999999999999999999999999864 34688999999999999999999999999874 378
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhc---CCCCC--cchhh
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDY---GIVPS--MKHYV 551 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~---Gi~Pd--~~tyn 551 (773)
.+|+.++.+|.+.|++++|+++|++|.+.. ..+..+|..++.+|.+.|++++|.++|++|.+.. +..|+ ..+|.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 999999999999999999999999998864 3468899999999999999999999999987642 66787 78999
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHH
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSK 618 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~ 618 (773)
.++.+|.+.|++++|.++|+++ ...| +..+|..|..+|...|++++|..+++.+.+++|++...+..
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 9999999999999999999987 3334 78999999999999999999999999999999998755443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.74 E-value=3.2e-15 Score=162.55 Aligned_cols=267 Identities=13% Similarity=0.084 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhhh---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQN---------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQA 419 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~~---------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a 419 (773)
+..++..+..+|.+.|++++|...+.. .....+...|...|++++|+++|.++.+.. +-+..+|..+..+
T Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 178 (388)
T 1w3b_A 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCV 178 (388)
T ss_dssp CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345677777777777777777775321 111225556667788888888888877652 2246677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHH
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAV 496 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl 496 (773)
+...|++++|...|+++++.. +.+...+..+...+.+.|++++|+..|++..+ | +..+|..+..+|...|++++|+
T Consensus 179 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 257 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888887764 23566777777888888888888888876652 3 5678888888888888888888
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-C
Q 004114 497 DIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-P 574 (773)
Q Consensus 497 ~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~ 574 (773)
..|+++.+.. | +..+|..+..++.+.|++++|..+|+++.+. .+.+..++..+..+|.+.|++++|.++++++ .
T Consensus 258 ~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 258 DTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888753 4 3567888888888888888888888888765 3456778888888888888888888888877 4
Q ss_pred CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcCC
Q 004114 575 MEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGL 621 (773)
Q Consensus 575 ~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG~ 621 (773)
..| +..+|..+..++.+.|++++|...++.+.++.|+...++...|.
T Consensus 334 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence 445 46788888888888888888888888888888887666554443
No 6
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.73 E-value=2.9e-15 Score=165.36 Aligned_cols=267 Identities=13% Similarity=0.075 Sum_probs=223.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDL----PTF 413 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~----~ty 413 (773)
+.+..++..+..+|...|++++|...+. ...+..+..+|.+.|++++|+++|+++.+. .|+. .++
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ 134 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQ 134 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHH
Confidence 4568899999999999999999999642 122234888999999999999999999875 4543 455
Q ss_pred HHHH------------HHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhH
Q 004114 414 SQLM------------QACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTS 478 (773)
Q Consensus 414 ~~LL------------~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~t 478 (773)
..+. ..+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|+.+|+++.+ .+..+
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 213 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5553 34888999999999999999874 44788999999999999999999999999874 47899
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH------------HHHHHcCCChHHHHHHHHHHHHhcCCCC
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ-IFIGV------------FSACSALGDVVEGMLHFESMSKDYGIVP 545 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~-Ty~~L------------L~a~~~~G~~deA~~if~~M~~~~Gi~P 545 (773)
|..+..+|...|++++|+.+|+++... .|+.. .+..+ ..+|.+.|++++|..+|..+.+. .|
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p 288 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EP 288 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CC
Confidence 999999999999999999999999874 45544 33333 78899999999999999999764 35
Q ss_pred C-----cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHH
Q 004114 546 S-----MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSK 618 (773)
Q Consensus 546 d-----~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~ 618 (773)
+ ..+|..+..+|.+.|++++|.++++++ .+.| +..+|..+..+|...|++++|...++.+.++.|++...+..
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 368 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHH
Confidence 4 457889999999999999999999987 4445 68999999999999999999999999999999998766554
Q ss_pred cCC
Q 004114 619 AGL 621 (773)
Q Consensus 619 aG~ 621 (773)
.+.
T Consensus 369 l~~ 371 (450)
T 2y4t_A 369 LEK 371 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 7
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=3.8e-18 Score=203.74 Aligned_cols=157 Identities=13% Similarity=0.123 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh----cCCHhHHHH
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVER---LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT----ERDLTSWDT 481 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k---~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~----~~d~~tyn~ 481 (773)
-..||++||++||+.|++++|.++|.+|.+ .|+.||++|||+||++||+.|++++|.++|++|. .||++|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456999999999999999999999988764 5899999999999999999999999999999998 489999999
Q ss_pred HHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC------cchhhhHH
Q 004114 482 MITGFAKNGLG-EDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS------MKHYVSIV 554 (773)
Q Consensus 482 LI~ay~~~G~~-deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd------~~tyn~LI 554 (773)
||.+||+.|+. ++|.++|++|.+.|+.||.+||+++|.++.+.+-++.. +++.. ++.|+ +.+...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V----rkv~P--~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV----HKVKP--TFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH----GGGCC--CCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH----HHhCc--ccCCCCCCcccccchHHHH
Confidence 99999999985 78999999999999999999999999887775444433 33422 34443 66777888
Q ss_pred HHHHhCC---------CHHHHHHHHH
Q 004114 555 DMLGSTG---------YLDEALEFIE 571 (773)
Q Consensus 555 ~~y~r~G---------~l~eA~~lf~ 571 (773)
+.|.+.+ -+++-.++|+
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~ 305 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFE 305 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHH
Confidence 9998766 2456666654
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.71 E-value=1.3e-14 Score=157.75 Aligned_cols=271 Identities=16% Similarity=0.120 Sum_probs=214.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhhh---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQN---------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVD-LPTFSQL 416 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~~---------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd-~~ty~~L 416 (773)
+.+..++..+..+|.+.|++++|...+.. ..+..+..+|.+.|++++|++.|.++.+. .|+ ..++..+
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 141 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDL 141 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45677888888899999999888885421 12334778888899999999999888875 344 3456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChH
Q 004114 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGE 493 (773)
Q Consensus 417 L~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~d 493 (773)
...+...|++++|.++|..+++.. +-+..+|..+..+|.+.|++++|+..|+++.+ | +...|..+...+...|+++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 777778899999999998888864 33577888888899999999999999988873 3 5677888888889999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHH
Q 004114 494 DAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIE 571 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~ 571 (773)
+|+..|++.... .| +..++..+..++...|++++|...|+++.+. .| +..+|..+..+|.+.|++++|.++|+
T Consensus 221 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 221 RAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999888774 34 4678888889999999999999999988663 34 46788889999999999999999998
Q ss_pred hC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-------HHHHcCCchhh
Q 004114 572 KM-PM-EPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN-------EKSKAGLVPVN 625 (773)
Q Consensus 572 ~M-~~-~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~-------~y~~aG~~~~~ 625 (773)
++ .. ..+..+|..+...+...|++++|...++.+.++.|++.. .+...|.+...
T Consensus 296 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 87 22 346788999999999999999999999999988888753 34556666443
No 9
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=7.2e-18 Score=201.38 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHhh-------cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 004114 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMT-------ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF 514 (773)
Q Consensus 442 ~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~-------~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty 514 (773)
..-..|||+||++|||+|++++|.++|++|. .||++|||+||.|||+.|++++|+++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3346799999999999999999999998875 479999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCh-HHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCC----CCHHHHHHHHHHH
Q 004114 515 IGVFSACSALGDV-VEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPME----PDVDVWEKLMNLC 589 (773)
Q Consensus 515 ~~LL~a~~~~G~~-deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~----Pd~~ty~~LI~a~ 589 (773)
++||.++|+.|+. ++|.++|++|.++ |+.||..+|++++..+.+.+-++.+.++...+... |.+.+...|.+.|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999999985 7899999999887 99999999999999888876666665554444111 1234444455555
Q ss_pred HHcC
Q 004114 590 RMHG 593 (773)
Q Consensus 590 ~~~G 593 (773)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5444
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.69 E-value=2.4e-14 Score=157.93 Aligned_cols=271 Identities=14% Similarity=0.065 Sum_probs=222.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhhh---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQN---------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQA 419 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~~---------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a 419 (773)
++.++..+...|.+.|++++|..++.. ..+..+..+|.+.|++++|+.+|.++.+.. +.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 456788899999999999999997531 222347889999999999999999999874 3367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCC-H---HHHHHHHH------------HHHhCCChHHHHHHHHHhhc---CCHhHHH
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLR-V---STYNGILK------------MYSECDSMDDAFSVFSNMTE---RDLTSWD 480 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd-~---~tynaLI~------------ay~k~G~l~eA~~lf~~M~~---~d~~tyn 480 (773)
+.+.|++++|..+++.+++.. |+ . .++..|+. .|.+.|++++|+.+|+++.+ .+..+|.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999998853 44 3 55555544 48999999999999999874 3788999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-cchhhhH------
Q 004114 481 TMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS-MKHYVSI------ 553 (773)
Q Consensus 481 ~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-~~tyn~L------ 553 (773)
.+..+|.+.|++++|+.+|+++.+.. ..+..++..+..++...|++++|..+|+.+.+. .|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHH
Confidence 99999999999999999999998753 346789999999999999999999999999764 344 3444444
Q ss_pred ------HHHHHhCCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-------
Q 004114 554 ------VDMLGSTGYLDEALEFIEKM-PMEPD-----VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN------- 614 (773)
Q Consensus 554 ------I~~y~r~G~l~eA~~lf~~M-~~~Pd-----~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~------- 614 (773)
..+|.+.|++++|.++|+++ .+.|+ ...|..+..++.+.|++++|...++.+.++.|.+..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 78899999999999999988 33454 457888999999999999999999999999998863
Q ss_pred HHHHcCCchhhh
Q 004114 615 EKSKAGLVPVNA 626 (773)
Q Consensus 615 ~y~~aG~~~~~v 626 (773)
.+...|.+....
T Consensus 338 ~~~~~~~~~~A~ 349 (450)
T 2y4t_A 338 AYLIEEMYDEAI 349 (450)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHhcCHHHHH
Confidence 445566665433
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.60 E-value=3.2e-13 Score=141.46 Aligned_cols=267 Identities=11% Similarity=0.008 Sum_probs=221.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLM 417 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL 417 (773)
..+..++..+...+...|++++|..++. ...+..++.++.+.|++++|+.++.++.+.. +-+..++..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 4455566688888889999999999642 2223347788999999999999999998863 23567888888
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChH
Q 004114 418 QACGDAK-ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGE 493 (773)
Q Consensus 418 ~a~~~~g-~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~d 493 (773)
..+...| ++++|...+..+++.. +.+..++..+..+|.+.|++++|+..|+++.+ | +..+|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999998864 33567899999999999999999999998874 3 5677888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcC-------CCCCcchhhhHHHHHHhCCCHHHH
Q 004114 494 DAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYG-------IVPSMKHYVSIVDMLGSTGYLDEA 566 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~G-------i~Pd~~tyn~LI~~y~r~G~l~eA 566 (773)
+|+.+|++..+.. ..+..++..+...+...|++++|..+++.+.+... .+....++..+..+|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998753 33567889999999999999999999998876421 133467899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 567 LEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 567 ~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
.+.|++. ...| +..+|..+..++...|++++|...++.+.++.|++...+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 9999987 2233 578899999999999999999999999999999886444
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.3e-12 Score=145.94 Aligned_cols=221 Identities=10% Similarity=-0.026 Sum_probs=151.8
Q ss_pred cCCHHHHHHHHHHHHH-----CCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004114 388 EGKVKEAIEVLGLLEK-----QCISV--------DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKM 454 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~-----~Gv~P--------d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~a 454 (773)
.|++++|+.+|+++.+ ..-.| +..++..+..++...|++++|..+++.+++.... ..++..+..+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 4556666666666555 21111 2345555666666777777777777777665433 6667777777
Q ss_pred HHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 004114 455 YSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM 531 (773)
Q Consensus 455 y~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~ 531 (773)
|.+.|++++|+..|+++.+ .+..+|..+...|...|++++|+..|+++.+.... +..++..+..++...|++++|.
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777776653 25567777778888888888888888887765322 4556777777778888888888
Q ss_pred HHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHH---cCChhHHHH
Q 004114 532 LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPD----VDVWEKLMNLCRM---HGNLELGDR 600 (773)
Q Consensus 532 ~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd----~~ty~~LI~a~~~---~G~~e~A~~ 600 (773)
.++..+.+. .+.+...+..+..+|.+.|++++|.+.++++ +-.++ ..+|..+..++.. .|+++.|..
T Consensus 359 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 359 TLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 888877654 2335667777888888888888888888776 21222 4477777788888 888888888
Q ss_pred HHHHHHHcCCCCc
Q 004114 601 CAEIVEQLDPSRL 613 (773)
Q Consensus 601 ~~e~m~el~p~~~ 613 (773)
.++.+.++.|.+.
T Consensus 437 ~~~~a~~~~~~~~ 449 (514)
T 2gw1_A 437 LLEKASKLDPRSE 449 (514)
T ss_dssp HHHHHHHHCTTCH
T ss_pred HHHHHHHhCcccH
Confidence 8888888888775
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.55 E-value=1e-11 Score=131.03 Aligned_cols=274 Identities=13% Similarity=0.070 Sum_probs=134.1
Q ss_pred HhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHH
Q 004114 331 YQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLL 401 (773)
Q Consensus 331 f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M 401 (773)
|+.+......+++.. +.+..++..+...|...|++++|...+. ...+..+...|.+.|++++|+..|.++
T Consensus 19 ~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 19 LADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344444444443322 2234455555555555555555555321 011112455555555566665555555
Q ss_pred HHCCCCC----CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHH
Q 004114 402 EKQCISV----DLPTFSQL------------MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAF 465 (773)
Q Consensus 402 ~~~Gv~P----d~~ty~~L------------L~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~ 465 (773)
.+. .| +...+..+ ...+...|++++|..++..+.+.. +.+..++..+..+|.+.|++++|+
T Consensus 98 ~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 98 LKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp HTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 543 23 22222222 244455555555655555555543 224455555555555556666665
Q ss_pred HHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHH------------HHHHHHHcCCChHH
Q 004114 466 SVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD-QIFI------------GVFSACSALGDVVE 529 (773)
Q Consensus 466 ~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~-~Ty~------------~LL~a~~~~G~~de 529 (773)
..|+++.+ .+..+|..+...|...|++++|+..|++..+.. |+. .++. .+...+...|++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 252 (359)
T 3ieg_A 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252 (359)
T ss_dssp HHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55555542 244555555555555555666655555555432 221 1111 11334555555555
Q ss_pred HHHHHHHHHHhcCCCCCc-----chhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHH
Q 004114 530 GMLHFESMSKDYGIVPSM-----KHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCA 602 (773)
Q Consensus 530 A~~if~~M~~~~Gi~Pd~-----~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~ 602 (773)
|..+++.+.+. .|+. ..+..+..+|.+.|++++|.+++++. ...| +..+|..+..++...|++++|...+
T Consensus 253 A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 329 (359)
T 3ieg_A 253 ATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 329 (359)
T ss_dssp HHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555443 1221 12333445555555666555555554 2222 3455555555555555555555555
Q ss_pred HHHHHcCCCCc
Q 004114 603 EIVEQLDPSRL 613 (773)
Q Consensus 603 e~m~el~p~~~ 613 (773)
+.+.+++|++.
T Consensus 330 ~~a~~~~p~~~ 340 (359)
T 3ieg_A 330 EAAQEHNENDQ 340 (359)
T ss_dssp HHHHTTCTTCH
T ss_pred HHHHhcCCCCh
Confidence 55555555543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.55 E-value=5.7e-12 Score=133.02 Aligned_cols=273 Identities=13% Similarity=0.041 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 350 GMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQAC 420 (773)
Q Consensus 350 ~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~ 420 (773)
+..+..+...+...|++++|...+. ...+..+...+...|++++|+..|+++.+.. +-+...+..+..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 4566678889999999999999642 1222347888999999999999999998863 23667899999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCC--CCHHHHHHH------------HHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHH
Q 004114 421 GDAKALEEAKAVHEHVERLLSP--LRVSTYNGI------------LKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMI 483 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~--pd~~tynaL------------I~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI 483 (773)
...|++++|...+..+++.... .+...+..+ ...+...|++++|+.+|+++.+ .+..+|..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999875320 134444444 5889999999999999998873 3778899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-cchhh-----------
Q 004114 484 TGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS-MKHYV----------- 551 (773)
Q Consensus 484 ~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-~~tyn----------- 551 (773)
..|...|++++|+..|+++.+.. ..+..++..+...+...|++++|..+|+...+. .|+ ...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHH
Confidence 99999999999999999998753 346778899999999999999999999998765 233 23332
Q ss_pred -hHHHHHHhCCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-------HHH
Q 004114 552 -SIVDMLGSTGYLDEALEFIEKM-PMEPD-V----DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN-------EKS 617 (773)
Q Consensus 552 -~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~----~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~-------~y~ 617 (773)
.+...+.+.|++++|.++++++ ...|+ . ..|..+..++...|+++.|...++.+.++.|.++. .+.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3366799999999999999987 33343 2 23556778899999999999999999999998863 455
Q ss_pred HcCCchhhhh
Q 004114 618 KAGLVPVNAS 627 (773)
Q Consensus 618 ~aG~~~~~v~ 627 (773)
..|.+.....
T Consensus 318 ~~g~~~~A~~ 327 (359)
T 3ieg_A 318 IEEMYDEAIQ 327 (359)
T ss_dssp HTTCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 6666654433
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.50 E-value=1.2e-12 Score=140.79 Aligned_cols=231 Identities=13% Similarity=0.070 Sum_probs=191.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 378 TLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 378 ~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
+..+...+.+.|++++|+++|+++.+.. +.+..+|..+..++...|++++|..+|+.+++.. +.+..++..+..+|.+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 5567889999999999999999998864 3477899999999999999999999999999874 3468899999999999
Q ss_pred CCChHHHHHHHHHhhcC---C----------HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHc
Q 004114 458 CDSMDDAFSVFSNMTER---D----------LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLK-PDDQIFIGVFSACSA 523 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~~---d----------~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~-Pd~~Ty~~LL~a~~~ 523 (773)
.|++++|+.+|+++.+. + ...+..+...|...|++++|+.+|+++.+..-. ++..++..+...+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 99999999999998742 1 223445688999999999999999999886422 257899999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 004114 524 LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRC 601 (773)
Q Consensus 524 ~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~ 601 (773)
.|++++|+.+|+++.+. .+.+..+|..+..+|.+.|++++|.+.|+++ .+.| +..+|..+..+|...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998775 3346789999999999999999999999987 3345 488999999999999999999999
Q ss_pred HHHHHHcCCCC
Q 004114 602 AEIVEQLDPSR 612 (773)
Q Consensus 602 ~e~m~el~p~~ 612 (773)
++.+.++.|..
T Consensus 304 ~~~al~~~~~~ 314 (365)
T 4eqf_A 304 FLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHhCccc
Confidence 99999887764
No 16
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.50 E-value=6.7e-12 Score=133.16 Aligned_cols=224 Identities=9% Similarity=0.047 Sum_probs=188.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL-RVSTYNGILKMYSECD 459 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~p-d~~tynaLI~ay~k~G 459 (773)
+..+|...|++++|+..++.. -.|+..++..+...+...++.++|.+.++.+++.+..| +...+..+..+|.+.|
T Consensus 40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 678999999999999877542 35677788889999999999999999999999887545 5666777779999999
Q ss_pred ChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHcCCChHHHHHHHHH
Q 004114 460 SMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF---IGVFSACSALGDVVEGMLHFES 536 (773)
Q Consensus 460 ~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty---~~LL~a~~~~G~~deA~~if~~ 536 (773)
++++|+++|++ ..+...+..++..|.+.|++++|++.|+++.+.. |+.... ..++..+...|++++|..+|++
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999998 4578899999999999999999999999999864 664321 2233444556999999999999
Q ss_pred HHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhH-HHHHHHHHHHcCCCCc
Q 004114 537 MSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLEL-GDRCAEIVEQLDPSRL 613 (773)
Q Consensus 537 M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~-A~~~~e~m~el~p~~~ 613 (773)
+.+. .+.+...++.+..+|.+.|++++|.+.|++. ...| +..+|..++..+...|+.++ +.++++.+.+++|+++
T Consensus 192 ~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 192 MADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 9886 4567889999999999999999999999986 4445 57889999999999999875 5789999999999996
Q ss_pred h
Q 004114 614 N 614 (773)
Q Consensus 614 ~ 614 (773)
.
T Consensus 270 ~ 270 (291)
T 3mkr_A 270 F 270 (291)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.50 E-value=1e-11 Score=129.94 Aligned_cols=234 Identities=9% Similarity=-0.010 Sum_probs=197.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 378 TLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 378 ~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
...+...+...|++++|+++|+++.+.. +.+..++..++.++...|++++|..++..+++.. +.+..++..+...|..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 3457888899999999999999998764 2344566677788899999999999999999874 3367788999999999
Q ss_pred CC-ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 004114 458 CD-SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLH 533 (773)
Q Consensus 458 ~G-~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~i 533 (773)
.| +.++|+..|+++.+ .+..+|..+...|...|++++|+..|+++.+.... +..++..+...+...|++++|..+
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99 99999999998874 26778999999999999999999999999886422 346677788999999999999999
Q ss_pred HHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-C----------CCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 004114 534 FESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-P----------MEPDVDVWEKLMNLCRMHGNLELGDRCA 602 (773)
Q Consensus 534 f~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~----------~~Pd~~ty~~LI~a~~~~G~~e~A~~~~ 602 (773)
++.+.+. .+.+...+..+...|.+.|++++|.+++++. . ...+..+|..+..++...|++++|...+
T Consensus 182 ~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 182 FSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9998654 2345688899999999999999999999876 1 1234678999999999999999999999
Q ss_pred HHHHHcCCCCchHH
Q 004114 603 EIVEQLDPSRLNEK 616 (773)
Q Consensus 603 e~m~el~p~~~~~y 616 (773)
+.+.++.|.+...+
T Consensus 260 ~~a~~~~~~~~~~~ 273 (330)
T 3hym_B 260 RQALVLIPQNASTY 273 (330)
T ss_dssp HHHHHHSTTCSHHH
T ss_pred HHHHhhCccchHHH
Confidence 99999999986444
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.49 E-value=2.7e-12 Score=137.32 Aligned_cols=233 Identities=10% Similarity=0.042 Sum_probs=195.6
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004114 376 NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMY 455 (773)
Q Consensus 376 ~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay 455 (773)
..+..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+++.. +.+..++..+..+|
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 335568889999999999999999999874 3467789999999999999999999999999875 44788999999999
Q ss_pred HhCCChHHHHHHHHHhhcC---CHhHHHH---------------HHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHH
Q 004114 456 SECDSMDDAFSVFSNMTER---DLTSWDT---------------MITGFAKNGLGEDAVDIFSQFKQAGLK-PDDQIFIG 516 (773)
Q Consensus 456 ~k~G~l~eA~~lf~~M~~~---d~~tyn~---------------LI~ay~~~G~~deAl~Lf~eM~~~Gv~-Pd~~Ty~~ 516 (773)
.+.|++++|+..|+++.+. +...+.. .+..+...|++++|+.+|+++.+.... ++..++..
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 9999999999999988742 2222221 244445899999999999999885422 14788999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 004114 517 VFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGN 594 (773)
Q Consensus 517 LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~ 594 (773)
+...+...|++++|..+|.++.+. .+.+...+..+..+|.+.|++++|.++|+++ .+.| +..+|..+..++...|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999998765 2335688999999999999999999999987 3334 57899999999999999
Q ss_pred hhHHHHHHHHHHHcCCCC
Q 004114 595 LELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 595 ~e~A~~~~e~m~el~p~~ 612 (773)
+++|...++.+.++.|..
T Consensus 301 ~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999988766
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.48 E-value=1.2e-12 Score=140.71 Aligned_cols=251 Identities=10% Similarity=-0.041 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 350 GMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQAC 420 (773)
Q Consensus 350 ~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~ 420 (773)
...+..+...|.+.|++++|...+. ...+..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3447788889999999999999642 1222348889999999999999999998863 33578999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C---CHhHHHHHHHHH
Q 004114 421 GDAKALEEAKAVHEHVERLLSP---------LRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R---DLTSWDTMITGF 486 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~---------pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~---d~~tyn~LI~ay 486 (773)
...|++++|..+++.+++.... ....++..+..+|.+.|++++|+.+|+++.+ | +..+|..+...|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 9999999999999999885311 0123445568899999999999999999874 3 688999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHH
Q 004114 487 AKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEA 566 (773)
Q Consensus 487 ~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA 566 (773)
...|++++|+.+|+++.+.. ..+..++..+..+|...|++++|+.+|+++.+. .+.+..++..|..+|.+.|++++|
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998853 235778999999999999999999999998765 233478899999999999999999
Q ss_pred HHHHHhC-CCCC-------------CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 567 LEFIEKM-PMEP-------------DVDVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 567 ~~lf~~M-~~~P-------------d~~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
.+.|+++ .+.| +..+|..|..++...|+.+.+..+.+.
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999987 1111 367899999999999999887766543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.47 E-value=3.3e-12 Score=136.57 Aligned_cols=250 Identities=12% Similarity=-0.011 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 350 GMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQAC 420 (773)
Q Consensus 350 ~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~ 420 (773)
...+..+...|.+.|++++|...+. ...+..+..+|.+.|++++|++.|+++.+.. +.+..++..+..++
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3456678889999999999998642 1222347888999999999999999998874 34778999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCHHHHHH---------------HHHHHHhCCChHHHHHHHHHhhc--C---CHhHHH
Q 004114 421 GDAKALEEAKAVHEHVERLLSPLRVSTYNG---------------ILKMYSECDSMDDAFSVFSNMTE--R---DLTSWD 480 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~pd~~tyna---------------LI~ay~k~G~l~eA~~lf~~M~~--~---d~~tyn 480 (773)
...|++++|...+..+++.... +...+.. .+..+.+.|++++|+.+|+++.+ | +..+|.
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 9999999999999999986432 2222211 24444488999999999998873 3 478899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC
Q 004114 481 TMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560 (773)
Q Consensus 481 ~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~ 560 (773)
.+...|...|++++|+..|+++.... ..+..++..+..++...|++++|..+|+++.+. .+.+...+..+..+|.+.
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHC
Confidence 99999999999999999999998753 234678999999999999999999999998765 234577899999999999
Q ss_pred CCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 561 GYLDEALEFIEKM-PMEP------------DVDVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 561 G~l~eA~~lf~~M-~~~P------------d~~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
|++++|.+.|+++ .+.| ...+|..|..++...|+.++|..+.+.
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999887 1111 268999999999999999999887663
No 21
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.5e-11 Score=137.16 Aligned_cols=280 Identities=9% Similarity=-0.000 Sum_probs=192.4
Q ss_pred HHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHH
Q 004114 329 RQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLG 399 (773)
Q Consensus 329 ~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~ 399 (773)
+.|+.+......+++.. |+..++..+..+|.+.|++++|...+. ...+..+..+|.+.|++++|+..|+
T Consensus 20 g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLS 97 (514)
T ss_dssp SCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45666666677676655 788888888888888899888888532 1222347788888899999999988
Q ss_pred HHHHCCCC------------------------------------------------------------------------
Q 004114 400 LLEKQCIS------------------------------------------------------------------------ 407 (773)
Q Consensus 400 ~M~~~Gv~------------------------------------------------------------------------ 407 (773)
++....-.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
T 2gw1_A 98 VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177 (514)
T ss_dssp HHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCC
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHH
Confidence 88765421
Q ss_pred -----CC-HHHHHHHHHHHH---hcCCHHHHHHHHHHHHH-----hCC--------CCCHHHHHHHHHHHHhCCChHHHH
Q 004114 408 -----VD-LPTFSQLMQACG---DAKALEEAKAVHEHVER-----LLS--------PLRVSTYNGILKMYSECDSMDDAF 465 (773)
Q Consensus 408 -----Pd-~~ty~~LL~a~~---~~g~le~A~~l~~~m~k-----~G~--------~pd~~tynaLI~ay~k~G~l~eA~ 465 (773)
|+ ...+..+..++. +.|++++|..++..+++ ..- +.+..++..+..+|.+.|++++|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 257 (514)
T 2gw1_A 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257 (514)
T ss_dssp SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 00 122222222222 26778888888887777 211 223456777777788888888888
Q ss_pred HHHHHhh--cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCC
Q 004114 466 SVFSNMT--ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGI 543 (773)
Q Consensus 466 ~lf~~M~--~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi 543 (773)
.+|+++. .|+..+|..+...|...|++++|+..|+++.... ..+..++..+...+...|++++|..+|+.+.+. .
T Consensus 258 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~ 334 (514)
T 2gw1_A 258 EDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--D 334 (514)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--C
T ss_pred HHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--C
Confidence 8887765 2446677777788888888888888888877643 224556777777788888888888888777653 2
Q ss_pred CCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 544 VPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 544 ~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
+.+...+..+..+|.+.|++++|.++++++ ...| +..+|..+...+...|++++|...++.+.++.|.+.
T Consensus 335 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 234567777777788888888888888776 2222 456777777788888888888888887777766553
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.44 E-value=1.3e-11 Score=128.96 Aligned_cols=218 Identities=9% Similarity=-0.019 Sum_probs=117.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHH---------
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGI--------- 451 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaL--------- 451 (773)
+..++.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+++.... +...+..+
T Consensus 61 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 138 (327)
T 3cv0_A 61 LGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDD 138 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHH
Confidence 4555566666666666666665542 224555556666666666666666666666554211 11111111
Q ss_pred -----HH-HHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004114 452 -----LK-MYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS 522 (773)
Q Consensus 452 -----I~-ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~ 522 (773)
.. .+.+.|++++|+.+|+++.+ .+..+|..+...|...|++++|+.+|+++.+.. ..+..++..+...+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 217 (327)
T 3cv0_A 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLA 217 (327)
T ss_dssp -------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 11 24455566666666665542 245556666666666666666666666665532 123445566666666
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHH
Q 004114 523 ALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-------------DVDVWEKLMNL 588 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-------------d~~ty~~LI~a 588 (773)
..|++++|..+|+++.+. .+.+...+..+..+|.+.|++++|.+.|+++ ...| +..+|..+..+
T Consensus 218 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 666666666666665443 1223455556666666666666666666554 1112 24555666666
Q ss_pred HHHcCChhHHHHHHH
Q 004114 589 CRMHGNLELGDRCAE 603 (773)
Q Consensus 589 ~~~~G~~e~A~~~~e 603 (773)
+...|+.+.|..+++
T Consensus 296 ~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 296 LNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHTTCHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHH
Confidence 666666666655544
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.43 E-value=1.4e-11 Score=128.78 Aligned_cols=230 Identities=10% Similarity=0.010 Sum_probs=191.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004114 377 GTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYS 456 (773)
Q Consensus 377 ~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~ 456 (773)
.+..+...+.+.|++++|+.+|+++.+.. +-+..++..+..++...|++++|...++.+++.. +.+..++..+..+|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34457788899999999999999998863 3377788889999999999999999999999874 447888999999999
Q ss_pred hCCChHHHHHHHHHhhcC---CHhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTER---DLTSWDTM--------------IT-GFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVF 518 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~~---d~~tyn~L--------------I~-ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL 518 (773)
+.|++++|+..|+++.+. +...+..+ .. .+...|++++|+.+++++.+... .+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 999999999999988743 33333333 22 37778899999999999988642 3678899999
Q ss_pred HHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 004114 519 SACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLE 596 (773)
Q Consensus 519 ~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e 596 (773)
..+...|++++|..++..+.+. .+.+...+..+..+|.+.|++++|.++|+++ ...| +..+|..+..++...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999998765 2345778999999999999999999999987 3334 5788999999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 004114 597 LGDRCAEIVEQLDPS 611 (773)
Q Consensus 597 ~A~~~~e~m~el~p~ 611 (773)
+|...++.+.++.|.
T Consensus 258 ~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999999887
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.42 E-value=1.1e-13 Score=154.71 Aligned_cols=218 Identities=15% Similarity=0.160 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhh----hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQ----NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAK 424 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~----~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g 424 (773)
+..+|+.|..++.+.|++++|.+.+. ...+..++.++...|++++|+..+...++. .+++.+.+.|+.+|++.|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhC
Confidence 33467777777777777777776542 122234666667777777777755444432 344566667777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 425 ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 425 ~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
+++++.++++ .|+..+|..+.+.|...|++++|..+|..+ ..|..|+.++.+.|++++|++.+.++
T Consensus 109 ~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA-- 174 (449)
T 1b89_A 109 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-- 174 (449)
T ss_dssp CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred CHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc--
Confidence 7777666663 255557777777777777777777777766 36777777777777777777777666
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHH
Q 004114 505 AGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVW 582 (773)
Q Consensus 505 ~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty 582 (773)
-+..||..++.+|...|+++.|..+... +...+.....|+..|.+.|++++|..+++.. +.++ ...+|
T Consensus 175 ----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~f 244 (449)
T 1b89_A 175 ----NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 244 (449)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHH
T ss_pred ----CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHH
Confidence 2566777777777777777777443322 2223333445666777777777776666644 4433 35666
Q ss_pred HHHHHHHHHc
Q 004114 583 EKLMNLCRMH 592 (773)
Q Consensus 583 ~~LI~a~~~~ 592 (773)
+-|--++++.
T Consensus 245 tel~il~~ky 254 (449)
T 1b89_A 245 TELAILYSKF 254 (449)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 6666666655
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.1e-11 Score=122.88 Aligned_cols=218 Identities=12% Similarity=0.034 Sum_probs=185.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCC----HHHHHHHH
Q 004114 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS--PLR----VSTYNGIL 452 (773)
Q Consensus 379 ~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~--~pd----~~tynaLI 452 (773)
..+...+...|++++|+.+|.++.+.. .+..++..+..++...|++++|...+..+++... .++ ..++..+.
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 347778889999999999999999887 7888999999999999999999999999888632 122 57889999
Q ss_pred HHHHhCCChHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHH
Q 004114 453 KMYSECDSMDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVE 529 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~de 529 (773)
.+|.+.|++++|+..|+++.+ ++ ...+...|++++|+..++++... .|+ ...+..+...+...|++++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999998874 44 24567778999999999999885 343 4577888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 530 GMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 530 A~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
|..+|+++.+. .+.+..++..+..+|.+.|++++|.+.|++. ...| +..+|..+..++...|+++.|...++...+
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999998775 2346788999999999999999999999887 3334 478899999999999999999999999998
Q ss_pred cC
Q 004114 608 LD 609 (773)
Q Consensus 608 l~ 609 (773)
+.
T Consensus 236 ~~ 237 (258)
T 3uq3_A 236 KD 237 (258)
T ss_dssp HH
T ss_pred hC
Confidence 87
No 26
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.40 E-value=1.8e-10 Score=129.59 Aligned_cols=219 Identities=9% Similarity=0.027 Sum_probs=162.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 389 GKVKEAIEVLGLLEKQCISVD--------LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 389 G~~~eAl~lf~~M~~~Gv~Pd--------~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
|++++|+.+|+++.+. .|+ ..++..+...+...|++++|..++..+++.. |+..++..+...|.+.|+
T Consensus 216 ~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcC
Confidence 3566777777776654 333 2345556666777888889999888888864 457778888888888899
Q ss_pred hHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 461 l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+++|+.+|+++.+ .+..+|..+...|...|++++|+..|+++.+... -+..++..+..++...|++++|..++..+
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988887763 3677888888888889999999999988877532 23467788888888889999999888888
Q ss_pred HHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHHc----------CChhHHH
Q 004114 538 SKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM----P----MEPDVDVWEKLMNLCRMH----------GNLELGD 599 (773)
Q Consensus 538 ~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M----~----~~Pd~~ty~~LI~a~~~~----------G~~e~A~ 599 (773)
.+. .+.+...+..+..+|.+.|++++|.+.|+++ + ..-....+..+..++... |++++|.
T Consensus 371 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~ 448 (537)
T 3fp2_A 371 KLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448 (537)
T ss_dssp HHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred HHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence 765 2345667888888888899999988888876 1 111233344455666666 8888888
Q ss_pred HHHHHHHHcCCCCch
Q 004114 600 RCAEIVEQLDPSRLN 614 (773)
Q Consensus 600 ~~~e~m~el~p~~~~ 614 (773)
..++.+.++.|.+..
T Consensus 449 ~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 449 KLLTKACELDPRSEQ 463 (537)
T ss_dssp HHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhCCCCHH
Confidence 888888888888753
No 27
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.38 E-value=9.2e-11 Score=118.72 Aligned_cols=195 Identities=11% Similarity=0.041 Sum_probs=110.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCCh
Q 004114 416 LMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLG 492 (773)
Q Consensus 416 LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~ 492 (773)
+...+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|+++|+++.+ .+..+|..+...|...|++
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 43 LGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH
Confidence 3333344444444444444444332 12334444444455555555555555544432 1444555555555566666
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHH
Q 004114 493 EDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIE 571 (773)
Q Consensus 493 deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~ 571 (773)
++|+++|+++...+..|+ ...+..+..++...|++++|..+|.++.+. .+.+...+..+..+|.+.|++++|.++++
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666665554323343 334555556666666666666666665543 12235566667777777777777777776
Q ss_pred hC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 572 KM-PME-PDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 572 ~M-~~~-Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
++ ... .+...+..+...+...|+.+.|.+.++.+.++.|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 200 LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 65 222 3456677777777778888888888888877777764
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.38 E-value=1.4e-13 Score=153.64 Aligned_cols=232 Identities=12% Similarity=0.072 Sum_probs=106.2
Q ss_pred hcCChhHHHHhhhh----ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004114 362 HEDDFAEASRSSQN----NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVE 437 (773)
Q Consensus 362 k~g~~~~A~~v~~~----~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~ 437 (773)
+.|++++|.+++.. ..+..|..++.+.|++++|++.|.+. +|..+|..++.+|...|++++|...+...+
T Consensus 15 ~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 77888888886432 23334899999999999999999753 588899999999999999999999888777
Q ss_pred HhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004114 438 RLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGV 517 (773)
Q Consensus 438 k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~L 517 (773)
+. .+++.+.+.|+.+|+|+|++++++++|+ .|+..+|+.+...|...|++++|..+|..+ ..|..|
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 74 4567889999999999999999998885 478889999999999999999999999977 379999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 004114 518 FSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLEL 597 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~ 597 (773)
..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+.+.|+. ...|+..|.+.|.+++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCHHH
T ss_pred HHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCHHH
Confidence 99999999999999999877 26789999999999999999998877766545544 4469999999999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHcCCc
Q 004114 598 GDRCAEIVEQLDPSRLNEKSKAGLV 622 (773)
Q Consensus 598 A~~~~e~m~el~p~~~~~y~~aG~~ 622 (773)
|..+++....+++....++...+.+
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il 250 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAIL 250 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999998776555544443
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.38 E-value=2.4e-11 Score=128.89 Aligned_cols=220 Identities=9% Similarity=0.002 Sum_probs=178.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDL--PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~--~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
|.-....|++.+|+..+++... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...|.+.+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4556678999999998876543 34443 3556678899999999999986644 24567788999999999999
Q ss_pred ChHHHHHHHHHhhc----C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 004114 460 SMDDAFSVFSNMTE----R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 460 ~l~eA~~lf~~M~~----~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
+.++|++.|+++.. | +...+..+...|...|++++|+++|++ ..+..++..+...+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999852 4 566777778999999999999999987 457788999999999999999999999
Q ss_pred HHHHHhcCCCCCcchh---hhHHHHHHhCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 535 ESMSKDYGIVPSMKHY---VSIVDMLGSTGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 535 ~~M~~~~Gi~Pd~~ty---n~LI~~y~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+.+.+. .|+.... .+++..+...|++++|..+|+++ ....+..+|..+..++...|++++|+..++.+.+++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999775 3654211 23445555679999999999998 223578899999999999999999999999999999
Q ss_pred CCCchHH
Q 004114 610 PSRLNEK 616 (773)
Q Consensus 610 p~~~~~y 616 (773)
|+++..+
T Consensus 231 p~~~~~l 237 (291)
T 3mkr_A 231 SGHPETL 237 (291)
T ss_dssp TTCHHHH
T ss_pred CCCHHHH
Confidence 9997543
No 30
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.37 E-value=7.5e-11 Score=120.37 Aligned_cols=223 Identities=9% Similarity=-0.029 Sum_probs=184.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChH
Q 004114 386 VKEGKVKEAIEVLGLLEKQCISV---DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMD 462 (773)
Q Consensus 386 ~~~G~~~eAl~lf~~M~~~Gv~P---d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~ 462 (773)
...|++++|+..|+++.+..... +..++..+..++...|++++|...+..+++.. +.+..++..+..+|.+.|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 35688999999999998864221 45678888999999999999999999999875 346889999999999999999
Q ss_pred HHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 463 DAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 463 eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
+|+..|+++.+ | +..+|..+...|...|++++|+..|+++.+. .|+......++..+...|++++|..++.....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998874 3 6789999999999999999999999999884 46655555566666778999999999988766
Q ss_pred hcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 540 DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-----VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 540 ~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-----~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
. .+++...+ .++..+...++.++|.+.+++. ...|. ..+|..+..++...|++++|...++.+.++.|.+.
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 5 33444444 4778888889999999999876 33332 57888999999999999999999999999999775
Q ss_pred h
Q 004114 614 N 614 (773)
Q Consensus 614 ~ 614 (773)
.
T Consensus 250 ~ 250 (275)
T 1xnf_A 250 V 250 (275)
T ss_dssp H
T ss_pred H
Confidence 3
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.37 E-value=1.8e-10 Score=113.37 Aligned_cols=202 Identities=10% Similarity=-0.023 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHH
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGF 486 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay 486 (773)
..++..+...+...|++++|..++..+++.. +.+..++..+..+|...|++++|..+|+++.+ .+..+|..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3456666666777777777777777776653 23466777777777777777777777776653 2566777777778
Q ss_pred HHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHH
Q 004114 487 AKN-GLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564 (773)
Q Consensus 487 ~~~-G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~ 564 (773)
... |++++|+.+|+++.+.+..|+ ..++..+..++...|++++|..++.++.+. .+.+...+..+..+|.+.|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHH
Confidence 888 888888888888776333344 456677777788888888888888877654 2234667777888888888888
Q ss_pred HHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch
Q 004114 565 EALEFIEKM-PME--PDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 565 eA~~lf~~M-~~~--Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~ 614 (773)
+|.++++++ ... .+...+..+...+...|+.+.|...++.+.++.|+++.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 888888776 222 35667777777788888888888888888888887753
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.34 E-value=1.1e-10 Score=119.31 Aligned_cols=239 Identities=13% Similarity=0.062 Sum_probs=185.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHH
Q 004114 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR--VSTYNGILKMYS 456 (773)
Q Consensus 379 ~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd--~~tynaLI~ay~ 456 (773)
......+.+.|++++|+.+|.+..+... -+..++..+..++...|++++|...+..+++....++ ..+|..+..+|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3466778899999999999999987632 2444788888899999999999999999988432222 445888999999
Q ss_pred hCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
+.|++++|+..|++..+ .+..+|..+...|...|++++|+..|++..+. .|+ ..++..+...+...+++++|..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998874 36688999999999999999999999988775 444 4555555525555669999999
Q ss_pred HHHHHHHhcCCCCCcchhhhHHHHHHhCCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHHcCChhHHH
Q 004114 533 HFESMSKDYGIVPSMKHYVSIVDMLGSTGY---LDEALEFIEKM----PMEPD------VDVWEKLMNLCRMHGNLELGD 599 (773)
Q Consensus 533 if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~---l~eA~~lf~~M----~~~Pd------~~ty~~LI~a~~~~G~~e~A~ 599 (773)
+|+.+.+. .+.+...+..+..++...|+ .++|...+++. .-.|+ ..+|..|...|...|++++|.
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998765 22345677778888888787 66677776655 11233 357888888999999999999
Q ss_pred HHHHHHHHcCCCCchHHHHcCCc
Q 004114 600 RCAEIVEQLDPSRLNEKSKAGLV 622 (773)
Q Consensus 600 ~~~e~m~el~p~~~~~y~~aG~~ 622 (773)
..++.+.+++|++..+....+.+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHHHhcCccHHHHHHHhhhh
Confidence 99999999999997666555544
No 33
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.32 E-value=8.5e-11 Score=117.67 Aligned_cols=208 Identities=14% Similarity=0.112 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHH
Q 004114 411 PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFA 487 (773)
Q Consensus 411 ~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~ 487 (773)
.+|..+...+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|+..|+++.+ .+..+|..+...|.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 344444445555555666666655555532 22455555566666666666666666665542 24556666666666
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHH
Q 004114 488 KNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEAL 567 (773)
Q Consensus 488 ~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~ 567 (773)
..|++++|+.+|+++.+.. ..+..++..+...+...|++++|..+++++.+. .+.+...+..+..+|.+.|++++|.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666666542 224455666666666777777777777666553 2234556667777777777777777
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcCCc
Q 004114 568 EFIEKM-PME-PDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLV 622 (773)
Q Consensus 568 ~lf~~M-~~~-Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG~~ 622 (773)
++|+++ ... .+..+|..+..++...|++++|...++.+.++.|++..++...+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 777765 222 3467888888889999999999999999999988886655444443
No 34
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.31 E-value=7.2e-10 Score=124.68 Aligned_cols=231 Identities=12% Similarity=0.044 Sum_probs=190.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+...+...|++++|+..|.++.+. .|+..++..+..++...|++++|..++..+++.. +.+..++..+..+|.+.|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 556788899999999999999886 5667888899999999999999999999999875 3468889999999999999
Q ss_pred hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 461 l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+++|+..|+++.+ | +..+|..+...|...|++++|+.+|+++.+.. ..+..++..+..++...|++++|..+|+.+
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999998873 3 67789999999999999999999999998863 234568888999999999999999999987
Q ss_pred HHhcCCCCC----cchhhhHHHHHHhC----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 004114 538 SKDYGIVPS----MKHYVSIVDMLGST----------GYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRC 601 (773)
Q Consensus 538 ~~~~Gi~Pd----~~tyn~LI~~y~r~----------G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~ 601 (773)
.+...-.++ ...+..+..+|.+. |++++|.+.|++. ...| +..+|..+...+...|++++|...
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 654211111 11233345667777 9999999999987 3334 578899999999999999999999
Q ss_pred HHHHHHcCCCCchH
Q 004114 602 AEIVEQLDPSRLNE 615 (773)
Q Consensus 602 ~e~m~el~p~~~~~ 615 (773)
++.+.++.|.....
T Consensus 485 ~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 485 FEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHC--CHHH
T ss_pred HHHHHHhCCCcHHH
Confidence 99999999987543
No 35
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.29 E-value=5e-10 Score=113.26 Aligned_cols=197 Identities=8% Similarity=-0.013 Sum_probs=165.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
.+...+...|++++|+++|+++.+.. ..+..++..+..++...|++++|.+++..+++.. +.+..++..+..+|.+.|
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHh
Confidence 46778889999999999999988763 3467788899999999999999999999999875 346788999999999999
Q ss_pred ChHHHHHHHHHhhc----C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 004114 460 SMDDAFSVFSNMTE----R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 460 ~l~eA~~lf~~M~~----~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
++++|+++|+++.+ | +...|..+...|...|++++|+..|+++.+.. ..+..++..+...+...|++++|..++
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999875 3 45678889999999999999999999998754 235778889999999999999999999
Q ss_pred HHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHH
Q 004114 535 ESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDV 581 (773)
Q Consensus 535 ~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~t 581 (773)
+.+.+. .+.+...+..+...|.+.|+.++|.++++++ ...|+...
T Consensus 199 ~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 199 DLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 988653 3345677888999999999999999999887 33454333
No 36
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.27 E-value=9.5e-10 Score=108.16 Aligned_cols=201 Identities=9% Similarity=-0.006 Sum_probs=164.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC-
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC- 458 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~- 458 (773)
.+...+...|++++|+++|.++.+.. +.+..++..+..++...|++++|..+++.+++.. +.+..++..+..+|.+.
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhc
Confidence 36778888899999999999888763 3357788889999999999999999999998874 34678899999999999
Q ss_pred CChHHHHHHHHHhhc--C---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 004114 459 DSMDDAFSVFSNMTE--R---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLH 533 (773)
Q Consensus 459 G~l~eA~~lf~~M~~--~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~i 533 (773)
|++++|+.+|+++.+ . +...|..+...|...|++++|+..|+++.+.. ..+..++..+..++...|++++|..+
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998876 2 25788899999999999999999999998753 22467888889999999999999999
Q ss_pred HHHHHHhcCCC-CCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 004114 534 FESMSKDYGIV-PSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKL 585 (773)
Q Consensus 534 f~~M~~~~Gi~-Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~L 585 (773)
++.+.+. .+ .+...+..+...+...|+.++|..+++.+ ...|+......+
T Consensus 170 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 170 FKKYQSR--VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHh--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9988765 22 45667788888889999999999999887 345654444333
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.25 E-value=4e-09 Score=108.75 Aligned_cols=219 Identities=13% Similarity=-0.000 Sum_probs=186.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGD----AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYS 456 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~----~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~ 456 (773)
+-..|...|++++|++.|.+..+.+ +...+..+-..+.. .+++++|...|.+..+.+ +...+..|-.+|.
T Consensus 12 lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 85 (273)
T 1ouv_A 12 LGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYY 85 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHh
Confidence 5667778899999999999988843 56778888888888 999999999999999876 7788889999999
Q ss_pred h----CCChHHHHHHHHHhhcC-CHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----
Q 004114 457 E----CDSMDDAFSVFSNMTER-DLTSWDTMITGFAK----NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA---- 523 (773)
Q Consensus 457 k----~G~l~eA~~lf~~M~~~-d~~tyn~LI~ay~~----~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~---- 523 (773)
. .+++++|+..|++..+. +..++..|-..|.. .+++++|+..|++..+.+ +..++..+-..+..
T Consensus 86 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 86 SGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCC
Confidence 9 99999999999988754 77889999999999 999999999999999876 56677777777877
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHh----CCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH----cCC
Q 004114 524 LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGS----TGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRM----HGN 594 (773)
Q Consensus 524 ~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r----~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~----~G~ 594 (773)
.++.++|..+|++..+. + +...+..|..+|.. .+++++|.+.|++. ... +...+..|-..|.. .++
T Consensus 163 ~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~ 237 (273)
T 1ouv_A 163 PKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNGEGVTRN 237 (273)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCC
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccC
Confidence 89999999999988664 3 45778888899999 99999999999876 322 36778888888888 899
Q ss_pred hhHHHHHHHHHHHcCCCCc
Q 004114 595 LELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 595 ~e~A~~~~e~m~el~p~~~ 613 (773)
+++|...++...++.|.+.
T Consensus 238 ~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 238 EKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp STTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHH
Confidence 9999999999999987653
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.8e-09 Score=108.51 Aligned_cols=211 Identities=11% Similarity=0.044 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHhhhh--------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 004114 351 MMASQVLNNCKHEDDFAEASRSSQN--------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQC--ISVD----LPTFSQL 416 (773)
Q Consensus 351 ~~~n~LI~~y~k~g~~~~A~~v~~~--------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~G--v~Pd----~~ty~~L 416 (773)
.++..+-..|...|++++|...+.. ..+..+..+|...|++++|++.|.+..+.. ..++ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4566788888999999999986421 222347888999999999999999987643 1223 5788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChH
Q 004114 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGE 493 (773)
Q Consensus 417 L~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~d 493 (773)
..++...|++++|...+..+++.. |+. ..+.+.|++++|...|+++... +...|..+...|...|+++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999864 443 4566778999999999998754 4567889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 494 DAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+|+..|++..+.. ..+..++..+..++...|++++|..+|+...+. .+.+...|..+..+|.+.|++++|.+.|++.
T Consensus 157 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 157 NAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998854 235778999999999999999999999998765 2345778889999999999999999999876
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.21 E-value=1.2e-09 Score=109.96 Aligned_cols=187 Identities=13% Similarity=0.047 Sum_probs=134.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC--
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC-- 458 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~-- 458 (773)
+-..+.+.|++++|+..|++..+.. +-+...+..+..++.+.|++++|...++..++.. +-+...+..+..+|.+.
T Consensus 11 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 88 (217)
T 2pl2_A 11 LGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYR 88 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhh
Confidence 5567778888888888888887653 2356677788888888888888888888888864 33567788888888888
Q ss_pred ---------CChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 459 ---------DSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 459 ---------G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
|++++|+..|++..+ | +...|..+-..|...|++++|+..|++..+.. .+...+..+..++...|+
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~ 166 (217)
T 2pl2_A 89 QAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGR 166 (217)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTC
T ss_pred hhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCC
Confidence 888888888887763 3 56778888888888888888888888888776 677778888888888888
Q ss_pred hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 527 VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 527 ~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+++|+..|+...+. -+-+...+..+..++.+.|++++|.+.|++.
T Consensus 167 ~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 167 LDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888887654 2234567777778888888888888877764
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.20 E-value=8e-10 Score=110.51 Aligned_cols=199 Identities=14% Similarity=0.122 Sum_probs=152.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|..++..+++.. +.+..++..+..+|.+.|+
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp -------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhcc
Confidence 5667778888999999999888753 3367788888889999999999999999998874 3467888899999999999
Q ss_pred hHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 461 l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+++|+++|+++.+ .+...|..+...|...|++++|+.+++++.+.. ..+..++..+..++...|++++|..+|..+
T Consensus 107 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998763 477889999999999999999999999988753 235678888888999999999999999988
Q ss_pred HHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 004114 538 SKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEK 584 (773)
Q Consensus 538 ~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~ 584 (773)
.+. .+.+..++..+..+|.+.|++++|.+.++++ ...|+ ..++..
T Consensus 186 ~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 186 TEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 765 2345678888999999999999999999887 33343 444433
No 41
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.17 E-value=5e-09 Score=111.01 Aligned_cols=218 Identities=11% Similarity=0.075 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 392 KEAIEVLGLLEKQCISVDLPTFSQLMQACG-------DAKAL-------EEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 392 ~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~-------~~g~l-------e~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
++|+.+|++.+... +-+...|..+...+. +.|++ ++|+.+|+..++.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888898888752 336667777776665 35775 8999999999884223466789999999999
Q ss_pred CCChHHHHHHHHHhhc--C-CHh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HcCCChHHHHH
Q 004114 458 CDSMDDAFSVFSNMTE--R-DLT-SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSAC-SALGDVVEGML 532 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~--~-d~~-tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~-~~~G~~deA~~ 532 (773)
.|++++|..+|++..+ | +.. .|..+...+.+.|++++|..+|++..+... ++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999875 3 343 899999999999999999999999987542 3344454443332 23799999999
Q ss_pred HHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004114 533 HFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-P---MEP--DVDVWEKLMNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 533 if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~---~~P--d~~ty~~LI~a~~~~G~~e~A~~~~e~m~ 606 (773)
+|+...+.. +-+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++.+.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999987752 335788899999999999999999999987 2 354 47799999999999999999999999999
Q ss_pred HcCCCCc
Q 004114 607 QLDPSRL 613 (773)
Q Consensus 607 el~p~~~ 613 (773)
++.|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 9999764
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.16 E-value=1.2e-09 Score=110.11 Aligned_cols=193 Identities=14% Similarity=0.124 Sum_probs=149.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHH
Q 004114 407 SVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMI 483 (773)
Q Consensus 407 ~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI 483 (773)
+++...+..+-.++.+.|++++|...++..++.. +.+...+..+..+|.+.|++++|+..|++..+ | +...|..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4566778888888999999999999999988864 34678888999999999999999999998763 4 677888999
Q ss_pred HHHHHc-----------CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhh
Q 004114 484 TGFAKN-----------GLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYV 551 (773)
Q Consensus 484 ~ay~~~-----------G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn 551 (773)
..|... |++++|+..|++..+. .|+ ..++..+-.++...|++++|+..|++..+. . .+...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~ 155 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHH
Confidence 999999 9999999999998875 454 567788888899999999999999998776 3 6778888
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
.+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|...++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999887 3344 5778888888999999999888777654
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.14 E-value=3.1e-09 Score=117.50 Aligned_cols=231 Identities=10% Similarity=0.057 Sum_probs=188.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKA-LEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~-le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
+-..+.+.|++++|+++|++.++.. .-+..+|..+-.++...|+ +++|+..++.+++... -+..+|..+-.+|.+.|
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g 180 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLR 180 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcc
Confidence 3445667788889999999988763 2256788889999999996 9999999999999753 37889999999999999
Q ss_pred ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCChHHH-----
Q 004114 460 SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA-LGDVVEG----- 530 (773)
Q Consensus 460 ~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~-~G~~deA----- 530 (773)
++++|+..|+++.+ .+...|..+..++.+.|++++|+..|+++++.... +...|..+-.++.. .|..++|
T Consensus 181 ~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 181 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 99999999998874 37889999999999999999999999999986432 56788888888888 6665777
Q ss_pred HHHHHHHHHhcCCCC-CcchhhhHHHHHHhCC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC---------ChhH
Q 004114 531 MLHFESMSKDYGIVP-SMKHYVSIVDMLGSTG--YLDEALEFIEKMPMEPD-VDVWEKLMNLCRMHG---------NLEL 597 (773)
Q Consensus 531 ~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G--~l~eA~~lf~~M~~~Pd-~~ty~~LI~a~~~~G---------~~e~ 597 (773)
+..|.+..+. .| +...|..+..+|.+.| ++++|.+++.++...|+ ...+..|...|.+.| .+++
T Consensus 260 l~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~ 336 (382)
T 2h6f_A 260 VQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336 (382)
T ss_dssp HHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 4777776553 45 4678888888899888 68999999988854554 678888998988874 2588
Q ss_pred HHHHHHHH-HHcCCCCchHHH
Q 004114 598 GDRCAEIV-EQLDPSRLNEKS 617 (773)
Q Consensus 598 A~~~~e~m-~el~p~~~~~y~ 617 (773)
|..+++.+ .+++|.....+.
T Consensus 337 A~~~~~~l~~~~DP~r~~~w~ 357 (382)
T 2h6f_A 337 ALELCEILAKEKDTIRKEYWR 357 (382)
T ss_dssp HHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHH
Confidence 99999999 899997755443
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.12 E-value=8.8e-09 Score=105.08 Aligned_cols=230 Identities=10% Similarity=-0.040 Sum_probs=178.7
Q ss_pred HHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 004114 353 ASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVD--LPTFSQLMQACG 421 (773)
Q Consensus 353 ~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd--~~ty~~LL~a~~ 421 (773)
.-.+...+...|++++|..++. ...+..+..+|.+.|++++|++.|.+..+..-.|+ ..+|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3456677888999999998642 22334578899999999999999999988442222 345888999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHH
Q 004114 422 DAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDI 498 (773)
Q Consensus 422 ~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~L 498 (773)
..|++++|...+...++... .+..++..+..+|.+.|++++|+..|++..+ | +..+|..+...+...+++++|++.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998743 3567899999999999999999999999874 3 667777777344445699999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHcCCC---hHHHHHHHHHHHHhcCCCCCc------chhhhHHHHHHhCCCHHHHHH
Q 004114 499 FSQFKQAGLKPD-DQIFIGVFSACSALGD---VVEGMLHFESMSKDYGIVPSM------KHYVSIVDMLGSTGYLDEALE 568 (773)
Q Consensus 499 f~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~---~deA~~if~~M~~~~Gi~Pd~------~tyn~LI~~y~r~G~l~eA~~ 568 (773)
|+++.+. .|+ ...+..+..++...++ .++|...+++..+...-.|+. ..|..|...|.+.|++++|.+
T Consensus 165 ~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999885 344 5677777788888888 888998888876653333442 577888999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHH
Q 004114 569 FIEKM-PMEPD-VDVWEKL 585 (773)
Q Consensus 569 lf~~M-~~~Pd-~~ty~~L 585 (773)
.|++. .+.|+ ...+..+
T Consensus 243 ~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhcCccHHHHHHHh
Confidence 99987 44454 4444444
No 45
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.09 E-value=1.1e-09 Score=113.23 Aligned_cols=231 Identities=11% Similarity=0.072 Sum_probs=154.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CC-CCCHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQ-------CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL------LS-PLRVS 446 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~-------Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~------G~-~pd~~ 446 (773)
+...|...|++++|+.+|.++.+. .......++..+...+...|++++|..++..+++. +- +....
T Consensus 33 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (311)
T 3nf1_A 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA 112 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 445555556666666666555542 22224557778888889999999999999988775 22 22356
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc-------C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE-------R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA------GLKP 509 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~-------~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~------Gv~P 509 (773)
++..+..+|...|++++|+.+|+++.+ + ...+|..+...|...|++++|+++|+++... +..|
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 788889999999999999999987763 1 3456888889999999999999999998774 2233
Q ss_pred C-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhc------CCCCCcchhhhHH-------HHHHhCCCHHHHHHHHHhCC-
Q 004114 510 D-DQIFIGVFSACSALGDVVEGMLHFESMSKDY------GIVPSMKHYVSIV-------DMLGSTGYLDEALEFIEKMP- 574 (773)
Q Consensus 510 d-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~------Gi~Pd~~tyn~LI-------~~y~r~G~l~eA~~lf~~M~- 574 (773)
+ ..++..+..++...|++++|..+++++.+.. ...+........+ ..+...+.+.+|...+....
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC
Confidence 3 3467888889999999999999998876521 1222222222222 22333444555555555552
Q ss_pred CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 575 MEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 575 ~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
..| ...+|..|..+|...|++++|...++...++.|.
T Consensus 273 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 233 3568889999999999999999999998887654
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.08 E-value=7.1e-08 Score=99.31 Aligned_cols=212 Identities=11% Similarity=0.025 Sum_probs=177.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhh-------hccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQ-------NNGTLEQLDGLVK----EGKVKEAIEVLGLLEKQCISVDLPTFSQLM 417 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~-------~~~~~~LI~a~~~----~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL 417 (773)
+..++..+-..|...|++++|...+. ...+..+-..|.. .+++++|++.|.+..+.+ +...+..+-
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 34566677788888999999988642 1122236677888 999999999999999886 778888888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHhhcC-CHhHHHHHHHHHHH
Q 004114 418 QACGD----AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE----CDSMDDAFSVFSNMTER-DLTSWDTMITGFAK 488 (773)
Q Consensus 418 ~a~~~----~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k----~G~l~eA~~lf~~M~~~-d~~tyn~LI~ay~~ 488 (773)
..+.. .+++++|...++...+.+ +...+..|-.+|.+ .++.++|+..|++..+. +..++..+-..|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 88988 999999999999999875 77889999999999 99999999999987754 67788888888988
Q ss_pred ----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHh-
Q 004114 489 ----NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA----LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGS- 559 (773)
Q Consensus 489 ----~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~----~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r- 559 (773)
.+++++|+..|++..+.+ +...+..+-..+.. .+++++|+.+|+...+. + +...+..|-.+|.+
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNG 231 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcC
Confidence 999999999999998875 45777888888888 99999999999988664 3 26677788888888
Q ss_pred ---CCCHHHHHHHHHhC
Q 004114 560 ---TGYLDEALEFIEKM 573 (773)
Q Consensus 560 ---~G~l~eA~~lf~~M 573 (773)
.+++++|.+.|++.
T Consensus 232 ~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKG 248 (273)
T ss_dssp SSSSCCSTTHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHH
Confidence 99999999999875
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.06 E-value=5.4e-09 Score=106.49 Aligned_cols=214 Identities=10% Similarity=-0.130 Sum_probs=160.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
.+...|...|++++|+..|+++.+.. +.+..+|..+..++...|++++|...++.+++.. +.+..++..+..+|.+.|
T Consensus 48 ~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g 125 (275)
T 1xnf_A 48 ERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGG 125 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhc
Confidence 36677788888888888898888763 3367889999999999999999999999999874 335778999999999999
Q ss_pred ChHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 460 SMDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 460 ~l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
++++|+.+|+++.+ |+...+..++..+...|++++|+.+|.+..... .++...+ .++..+...++.++|...+..+
T Consensus 126 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 126 RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999998873 544455555566677899999999998877653 3343344 3666777888888898888766
Q ss_pred HHhcCCCCC-----cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 004114 538 SKDYGIVPS-----MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCA 602 (773)
Q Consensus 538 ~~~~Gi~Pd-----~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~ 602 (773)
.+ ..|. ...+..+..+|.+.|++++|.+.|++. ...|+. +.....++...|++++|...+
T Consensus 204 ~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 204 AT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred hc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 32 2232 577888999999999999999999987 555632 222344566667777665554
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.06 E-value=3.2e-09 Score=115.46 Aligned_cols=257 Identities=11% Similarity=-0.022 Sum_probs=187.6
Q ss_pred HHHHHHHHhcCChhHHHHhhhh-------------ccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHH
Q 004114 354 SQVLNNCKHEDDFAEASRSSQN-------------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQ----CISV-DLPTFSQ 415 (773)
Q Consensus 354 n~LI~~y~k~g~~~~A~~v~~~-------------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~----Gv~P-d~~ty~~ 415 (773)
..+-..+...|++++|...+.. ..+..+...|...|++++|++.|++..+. +-.| ...++..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3555677788888888885311 12224677888899999999999887653 1112 3356777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh----CC-CCCHHHHHHHHHHHHhCCC-----------------hHHHHHHHHHhhc
Q 004114 416 LMQACGDAKALEEAKAVHEHVERL----LS-PLRVSTYNGILKMYSECDS-----------------MDDAFSVFSNMTE 473 (773)
Q Consensus 416 LL~a~~~~g~le~A~~l~~~m~k~----G~-~pd~~tynaLI~ay~k~G~-----------------l~eA~~lf~~M~~ 473 (773)
+...+...|++++|...+.++++. +- .....++..+...|...|+ +++|+..|++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 888888999999999999887765 21 1234577888889999999 8999888877642
Q ss_pred -----C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 474 -----R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPD----DQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 474 -----~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd----~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
. ...+|..+...|...|++++|+..|++..+... .++ ..++..+..++...|++++|..++++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 235788888999999999999999988765311 112 23678888889999999999999987654
Q ss_pred hcCCCC----CcchhhhHHHHHHhCCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 540 DYGIVP----SMKHYVSIVDMLGSTGYLDEALEFIEKM-------PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 540 ~~Gi~P----d~~tyn~LI~~y~r~G~l~eA~~lf~~M-------~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
...-.. ...++..+..+|.+.|++++|.+++++. +..+ ...++..|..++...|++++|...++...+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 311111 1467778888999999999999998876 1111 145777888899999999999999998887
Q ss_pred cCC
Q 004114 608 LDP 610 (773)
Q Consensus 608 l~p 610 (773)
+.+
T Consensus 372 ~~~ 374 (411)
T 4a1s_A 372 LAX 374 (411)
T ss_dssp HCC
T ss_pred HHh
Confidence 754
No 49
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.04 E-value=8.2e-09 Score=106.98 Aligned_cols=256 Identities=11% Similarity=-0.039 Sum_probs=179.5
Q ss_pred HHHHHHHhcCChhHHHHhhhh-------------ccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 004114 355 QVLNNCKHEDDFAEASRSSQN-------------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQ----CISV-DLPTFSQL 416 (773)
Q Consensus 355 ~LI~~y~k~g~~~~A~~v~~~-------------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~----Gv~P-d~~ty~~L 416 (773)
..-..+...|++++|...+.. ..+..+...|...|++++|++.+.+..+. +-.| ...++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344566677788877775311 11223677788888999998888876543 2111 24467777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC-CCC----HHHHHHHHHHHHhCCC--------------------hHHHHHHHHHh
Q 004114 417 MQACGDAKALEEAKAVHEHVERLLS-PLR----VSTYNGILKMYSECDS--------------------MDDAFSVFSNM 471 (773)
Q Consensus 417 L~a~~~~g~le~A~~l~~~m~k~G~-~pd----~~tynaLI~ay~k~G~--------------------l~eA~~lf~~M 471 (773)
...+...|++++|...+.+.++... ..+ ..++..+...|...|+ +++|+..|++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7888889999999999888766411 112 3477788888888898 88888888776
Q ss_pred hc-----C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 472 TE-----R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPD----DQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 472 ~~-----~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd----~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
.+ . ...+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..++++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 42 1 234678888889999999999999988765311 112 236777888888999999999888876
Q ss_pred HHhcCCCCC----cchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004114 538 SKDYGIVPS----MKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPD----VDVWEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 538 ~~~~Gi~Pd----~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd----~~ty~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
.+...-..+ ..++..+...|...|++++|.+.+++. +-..+ ..++..+...+...|++++|...++..
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 543111111 456777888899999999999988776 10112 447778888899999999999999888
Q ss_pred HHcCC
Q 004114 606 EQLDP 610 (773)
Q Consensus 606 ~el~p 610 (773)
.++.+
T Consensus 330 ~~~~~ 334 (338)
T 3ro2_A 330 LEISR 334 (338)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 87754
No 50
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.01 E-value=2e-08 Score=95.15 Aligned_cols=165 Identities=9% Similarity=0.033 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004114 446 STYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS 522 (773)
Q Consensus 446 ~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~ 522 (773)
..+..+...|...|++++|+.+|+++.+ .+..+|..+...|...|++++|+.+|+++.+.. ..+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4566677778888888888888887764 266778888888888888888888888887652 235667777888888
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHH
Q 004114 523 ALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PM-EPDVDVWEKLMNLCRMHGNLELGDR 600 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~-~Pd~~ty~~LI~a~~~~G~~e~A~~ 600 (773)
..|++++|..+++.+.+. .+.+...+..+..+|.+.|++++|.++++++ .. ..+..+|..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888887665 3345677778888888899999998888876 22 2357788888889999999999999
Q ss_pred HHHHHHHcCCCCc
Q 004114 601 CAEIVEQLDPSRL 613 (773)
Q Consensus 601 ~~e~m~el~p~~~ 613 (773)
.++.+.++.|++.
T Consensus 166 ~~~~~~~~~~~~~ 178 (186)
T 3as5_A 166 HFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCch
Confidence 9998888877664
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.01 E-value=1.2e-08 Score=109.79 Aligned_cols=261 Identities=10% Similarity=-0.043 Sum_probs=188.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHhhh-------------hccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-
Q 004114 348 QNGMMASQVLNNCKHEDDFAEASRSSQ-------------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQ----CISVD- 409 (773)
Q Consensus 348 pd~~~~n~LI~~y~k~g~~~~A~~v~~-------------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~----Gv~Pd- 409 (773)
.....+..+-..+.+.|++++|...+. ...+..+...|...|++++|+..|++.... +-.|.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 344455566777888888888888531 011223677888899999999999887543 21222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCC----HHHHHHHHHHHHhCCC--------------------hHHH
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLS-PLR----VSTYNGILKMYSECDS--------------------MDDA 464 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~-~pd----~~tynaLI~ay~k~G~--------------------l~eA 464 (773)
..++..+...+...|++++|...+...++... ..+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34677778888899999999999988776411 012 4477888888999999 8999
Q ss_pred HHHHHHhhc-----C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcCCChHHH
Q 004114 465 FSVFSNMTE-----R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPD----DQIFIGVFSACSALGDVVEG 530 (773)
Q Consensus 465 ~~lf~~M~~-----~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd----~~Ty~~LL~a~~~~G~~deA 530 (773)
+..|++..+ . ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 888876642 1 235788888999999999999999988865311 122 23677888888999999999
Q ss_pred HHHHHHHHHhcCCCCC----cchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChhHH
Q 004114 531 MLHFESMSKDYGIVPS----MKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPD----VDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 531 ~~if~~M~~~~Gi~Pd----~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd----~~ty~~LI~a~~~~G~~e~A 598 (773)
..++++..+...-..+ ..++..+...|.+.|++++|.+.+++. +-.++ ..++..+...+...|+++.|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998876543111111 457778888999999999999998876 11122 55778888889999999999
Q ss_pred HHHHHHHHHc
Q 004114 599 DRCAEIVEQL 608 (773)
Q Consensus 599 ~~~~e~m~el 608 (773)
...++...++
T Consensus 327 ~~~~~~al~~ 336 (406)
T 3sf4_A 327 MHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887765
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.99 E-value=2.7e-08 Score=95.94 Aligned_cols=166 Identities=13% Similarity=0.129 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSA 520 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a 520 (773)
++.+|..|-..|.+.|++++|+..|++..+ | +..+|..+...|.+.|++++|+..+.+...... -+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 456777777777777777777777777653 3 666777777788888888888888877766432 234556666667
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A 598 (773)
+...++++.|...+....+. .+-+...+..+..+|.+.|++++|.+.|++. .+.| +..+|..+-.++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 77778888888877776554 2334567777788888888888888888776 3334 467888888888888999989
Q ss_pred HHHHHHHHHcCCCC
Q 004114 599 DRCAEIVEQLDPSR 612 (773)
Q Consensus 599 ~~~~e~m~el~p~~ 612 (773)
...++...+++|++
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 88888888888764
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.94 E-value=1e-08 Score=111.43 Aligned_cols=229 Identities=12% Similarity=0.056 Sum_probs=178.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CC-CCCHHHHHH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDL----PTFSQLMQACGDAKALEEAKAVHEHVERL----LS-PLRVSTYNG 450 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~----~ty~~LL~a~~~~g~le~A~~l~~~m~k~----G~-~pd~~tyna 450 (773)
.+-..+...|++++|+.+|+++.+.... +. .++..+..++...|++++|...+++.++. +. +....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 4677889999999999999999986322 33 46778888899999999999999988764 11 223567888
Q ss_pred HHHHHHhCCChHHHHHHHHHhhcC---------CHhHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 004114 451 ILKMYSECDSMDDAFSVFSNMTER---------DLTSWDTMITGFAKNGL-----------------GEDAVDIFSQFKQ 504 (773)
Q Consensus 451 LI~ay~k~G~l~eA~~lf~~M~~~---------d~~tyn~LI~ay~~~G~-----------------~deAl~Lf~eM~~ 504 (773)
+...|...|++++|+..|++..+- ...+|..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999887631 34578889999999999 9999999988654
Q ss_pred C----CCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC----cchhhhHHHHHHhCCCHHHHHHHHHhC-C
Q 004114 505 A----GLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS----MKHYVSIVDMLGSTGYLDEALEFIEKM-P 574 (773)
Q Consensus 505 ~----Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd----~~tyn~LI~~y~r~G~l~eA~~lf~~M-~ 574 (773)
. +-.|. ..++..+...+...|++++|..++++..+...-.++ ...+..+..+|...|++++|.+.|++. .
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 21122 247778888999999999999999887553111112 237888999999999999999999876 1
Q ss_pred C---CC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 575 M---EP----DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 575 ~---~P----d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+ .. ...++..+...+...|++++|...++...++.
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 11 15678888999999999999999998887663
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.93 E-value=1.9e-08 Score=104.18 Aligned_cols=228 Identities=15% Similarity=0.111 Sum_probs=176.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC-CHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD----LPTFSQLMQACGDAKALEEAKAVHEHVERL----LSPL-RVSTYNGI 451 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~----G~~p-d~~tynaL 451 (773)
.-..+...|++++|+.+|+++.+.... + ...+..+...+...|++++|...+...++. +..+ ...++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 466788999999999999999886322 3 357778888899999999999999887654 2222 25578888
Q ss_pred HHHHHhCCChHHHHHHHHHhhc-----CC----HhHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 004114 452 LKMYSECDSMDDAFSVFSNMTE-----RD----LTSWDTMITGFAKNGL--------------------GEDAVDIFSQF 502 (773)
Q Consensus 452 I~ay~k~G~l~eA~~lf~~M~~-----~d----~~tyn~LI~ay~~~G~--------------------~deAl~Lf~eM 502 (773)
...|...|++++|+..|++..+ .+ ..+|..+...|...|+ +++|+..+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999988753 22 3478889999999999 99999999886
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC----cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 503 KQA----GLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS----MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 503 ~~~----Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd----~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
... +-.|. ..++..+...+...|++++|..++++..+...-.++ ..++..+...|...|++++|.+++++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 21121 346777888889999999999999887543111111 337888889999999999999999876
Q ss_pred ----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 574 ----PMEPD----VDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 574 ----~~~Pd----~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+-.++ ..++..+...+...|++++|...++...++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 11122 5677888889999999999999998887663
No 55
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.91 E-value=1.9e-06 Score=97.12 Aligned_cols=207 Identities=9% Similarity=-0.019 Sum_probs=89.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----CC
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGD----AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE----CD 459 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~----~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k----~G 459 (773)
.++.++|++.|++..+.| +...+..|-..+.. .++.++|...+....+.| +...+..|..+|.. .+
T Consensus 164 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 445555555555554443 34444444444444 445555555555554433 23344444444443 44
Q ss_pred ChHHHHHHHHHhhcC-CHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-----CChHH
Q 004114 460 SMDDAFSVFSNMTER-DLTSWDTMITGFAK----NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL-----GDVVE 529 (773)
Q Consensus 460 ~l~eA~~lf~~M~~~-d~~tyn~LI~ay~~----~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~-----G~~de 529 (773)
+.++|+.+|++..+. +...+..|-..|.. .++.++|+.+|++..+.| +...+..|-..+... ++.++
T Consensus 238 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 555555555544322 33344444444444 444555555555444332 222333333333333 44455
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhHHHHHHhCC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHH
Q 004114 530 GMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG---YLDEALEFIEKMPMEPDVDVWEKLMNLCRM----HGNLELGDRCA 602 (773)
Q Consensus 530 A~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G---~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~----~G~~e~A~~~~ 602 (773)
|..+|....+. + +...+..|-.+|.+.| +.++|.++|++.--..+...+..|-..|.. .++.++|...+
T Consensus 315 A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 315 AISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 54444444332 1 2233333444444333 344444444433101233444444444444 34444444444
Q ss_pred HHHHH
Q 004114 603 EIVEQ 607 (773)
Q Consensus 603 e~m~e 607 (773)
+...+
T Consensus 391 ~~A~~ 395 (490)
T 2xm6_A 391 RKAAE 395 (490)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44433
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.89 E-value=1.8e-07 Score=90.10 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHH
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGF 486 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay 486 (773)
..+|..|-.++...|++++|...|++.++.. +-+..++..+..+|.+.|++++|+..+..... .+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 4455555555556666666666666555543 22455555555666666666666666555442 2444555555555
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHH
Q 004114 487 AKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEA 566 (773)
Q Consensus 487 ~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA 566 (773)
...+++++|...+.+..... .-+..++..+-.++...|++++|+..|++..+. -+-+..+|..+..+|.+.|++++|
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHHHH
Confidence 56666666666665555432 113344555555556666666666666555443 122345555566666666666666
Q ss_pred HHHHHhC
Q 004114 567 LEFIEKM 573 (773)
Q Consensus 567 ~~lf~~M 573 (773)
.+.|++.
T Consensus 161 ~~~~~~a 167 (184)
T 3vtx_A 161 VKYFKKA 167 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.88 E-value=4.5e-08 Score=105.17 Aligned_cols=228 Identities=15% Similarity=0.106 Sum_probs=177.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC-CHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD----LPTFSQLMQACGDAKALEEAKAVHEHVERL----LSPL-RVSTYNGI 451 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~----G~~p-d~~tynaL 451 (773)
+-..+.+.|++++|+.+|+++.+... .+ ..++..+..++...|++++|...+.++++. +..+ ...++..+
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 56678899999999999999988632 23 356778888899999999999999987654 2222 25578888
Q ss_pred HHHHHhCCChHHHHHHHHHhhc-----CC----HhHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 004114 452 LKMYSECDSMDDAFSVFSNMTE-----RD----LTSWDTMITGFAKNGL--------------------GEDAVDIFSQF 502 (773)
Q Consensus 452 I~ay~k~G~l~eA~~lf~~M~~-----~d----~~tyn~LI~ay~~~G~--------------------~deAl~Lf~eM 502 (773)
..+|...|++++|+..|++..+ .+ ..+|..+...|...|+ +++|+..+.+.
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999988763 22 4578889999999999 99999999886
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC----cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 503 KQA----GLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS----MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 503 ~~~----Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd----~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
... +-.|. ..++..+...+...|++++|..++++..+...-.++ ..++..+..+|...|++++|.+.+++.
T Consensus 174 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 542 21122 346778888899999999999999887653211122 237888899999999999999999876
Q ss_pred ----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 574 ----PMEPD----VDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 574 ----~~~Pd----~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+-.++ ..++..+...+...|++++|...++...++.
T Consensus 254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 11112 5678888999999999999999998887764
No 58
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.87 E-value=1.4e-07 Score=107.55 Aligned_cols=216 Identities=11% Similarity=0.079 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 392 KEAIEVLGLLEKQCISVDLPTFSQLMQACGD-------AKALE-------EAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 392 ~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~-------~g~le-------~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
++|+.+|++.+.. .+-+...|..+...+.+ .|+++ +|+.+++..++.-.+-+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4778888888875 23366778777777765 68877 899999988863234468899999999999
Q ss_pred CCChHHHHHHHHHhhc--C-CH-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHcCCChHHHHH
Q 004114 458 CDSMDDAFSVFSNMTE--R-DL-TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFS-ACSALGDVVEGML 532 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~--~-d~-~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~-a~~~~G~~deA~~ 532 (773)
.|++++|..+|+++.+ | +. ..|..++..+.+.|++++|.++|++..+..- .+...|..... .+...|+.++|..
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHH
Confidence 9999999999998874 3 33 5899999999999999999999999987521 12233332222 2335899999999
Q ss_pred HHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004114 533 HFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 533 if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~ 606 (773)
+|+...+.. +-+...|..+++.+.+.|+.++|..+|++. +..|+ ..+|...+.....+|+.+.+..+.+.+.
T Consensus 413 ~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 413 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999887752 235788999999999999999999999987 33333 5689999999999999999999999999
Q ss_pred HcCCC
Q 004114 607 QLDPS 611 (773)
Q Consensus 607 el~p~ 611 (773)
+..|+
T Consensus 491 ~~~p~ 495 (530)
T 2ooe_A 491 TAFRE 495 (530)
T ss_dssp HHTHH
T ss_pred HHCch
Confidence 88774
No 59
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.87 E-value=2.5e-08 Score=101.18 Aligned_cols=165 Identities=11% Similarity=0.107 Sum_probs=97.5
Q ss_pred ccHHHHHHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHH
Q 004114 322 YQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLL 401 (773)
Q Consensus 322 ~~w~~a~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M 401 (773)
-.+..+...|+++.+....+..........++..+..+|...|++++|... +.+|+++..+.
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~------------------~~~al~~~~~~ 76 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL------------------LNDALAIREKT 76 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHH------------------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHH------------------HHHHHHHHHHH
Confidence 344567777777776666544322222334455555555555555555552 12233333322
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----C--CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC
Q 004114 402 EKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL-----S--PLRVSTYNGILKMYSECDSMDDAFSVFSNMTER 474 (773)
Q Consensus 402 ~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G-----~--~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~ 474 (773)
..........++..+..++...|++++|...+.++++.. . +....++..+...|.+.|++++|+.+|+++.+.
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 77 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp TCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 111112234578888888899999999999998887651 1 223556777777788888888888777765421
Q ss_pred -----------CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 475 -----------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 475 -----------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
...+|..+...|...|++++|+.+|++..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234556666666666666666666666554
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.86 E-value=2.1e-07 Score=102.86 Aligned_cols=233 Identities=9% Similarity=0.043 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 351 MMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGK-VKEAIEVLGLLEKQCISVDLPTFSQLMQAC 420 (773)
Q Consensus 351 ~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~-~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~ 420 (773)
.++..+-.++.+.|++++|+..+. ...+..+-..|.+.|+ +++|+..|++.++..- -+...|..+-.++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 355677788889999999998532 1222236777889997 9999999999998642 2677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHH-cCChHHH-
Q 004114 421 GDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAK-NGLGEDA- 495 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~-~G~~deA- 495 (773)
...|++++|+..++.+++... -+..+|..+..+|.+.|++++|+..|+++.+ | +...|+.+..+|.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 999999999999999999753 3788999999999999999999999999884 3 77899999999999 6766888
Q ss_pred ----HHHHHHHHHCCCCCC-HHHHHHHHHHHHcCC--ChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCC-------
Q 004114 496 ----VDIFSQFKQAGLKPD-DQIFIGVFSACSALG--DVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG------- 561 (773)
Q Consensus 496 ----l~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G--~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G------- 561 (773)
+..|++.+.. .|+ ...|..+...+...| ++++|+..+.++ + .-+.+...+..|.++|.+.|
T Consensus 256 ~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 256 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccch
Confidence 5888888774 454 567888888888888 689999888777 2 22334577888999998874
Q ss_pred --CHHHHHHHHHhC--CCCCC-HHHHHHHHHHHH
Q 004114 562 --YLDEALEFIEKM--PMEPD-VDVWEKLMNLCR 590 (773)
Q Consensus 562 --~l~eA~~lf~~M--~~~Pd-~~ty~~LI~a~~ 590 (773)
.+++|.++++++ .+.|. ...|..+...+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 369999999988 56665 456666665554
No 61
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.86 E-value=3.8e-06 Score=94.63 Aligned_cols=248 Identities=11% Similarity=-0.011 Sum_probs=144.7
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHhhh-------hccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004114 349 NGMMASQVLNNCKH----EDDFAEASRSSQ-------NNGTLEQLDGLVK----EGKVKEAIEVLGLLEKQCISVDLPTF 413 (773)
Q Consensus 349 d~~~~n~LI~~y~k----~g~~~~A~~v~~-------~~~~~~LI~a~~~----~G~~~eAl~lf~~M~~~Gv~Pd~~ty 413 (773)
++.....|-.+|.. .+++++|...+. ......|-..|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444455555555 566666665431 1111224445555 667777777777766654 44555
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHhhcC-CHhHHHHHHH
Q 004114 414 SQLMQACGD----AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE----CDSMDDAFSVFSNMTER-DLTSWDTMIT 484 (773)
Q Consensus 414 ~~LL~a~~~----~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k----~G~l~eA~~lf~~M~~~-d~~tyn~LI~ 484 (773)
..|-..+.. .+++++|...|+...+.| +...+..|-.+|.. .++.++|+..|++..+. +..++..|..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555 566777777777766654 44555666666665 56677777777665543 5566666666
Q ss_pred HHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHH
Q 004114 485 GFAK----NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA----LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDM 556 (773)
Q Consensus 485 ay~~----~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~----~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~ 556 (773)
.|.. .++.++|+..|++..+.| +..++..|-..+.. .++.++|..+|+...+. + +...+..|-.+
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G---NSIAQFRLGYI 264 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T---CHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHH
Confidence 6666 667777777777666654 34455555555554 56677777766665443 2 33445555555
Q ss_pred HHh----CCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHcC
Q 004114 557 LGS----TGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMH-----GNLELGDRCAEIVEQLD 609 (773)
Q Consensus 557 y~r----~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~-----G~~e~A~~~~e~m~el~ 609 (773)
|.. .++.++|.++|++.--.-+...+..|-..+... ++.++|...++...+..
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 555 666777777776652122445555555555555 66666666666665543
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.86 E-value=4e-08 Score=111.24 Aligned_cols=206 Identities=13% Similarity=0.072 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 004114 390 KVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKAL-EEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVF 468 (773)
Q Consensus 390 ~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~l-e~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf 468 (773)
.+++|+..+.+.... ...+...+..+-.++...|++ ++|...+++.++.. +-+..+|..|..+|.+.|++++|+..|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356777777776554 234677888888888999999 99999999998874 335788999999999999999999999
Q ss_pred HHhh--cCCHhHHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--------CChHH
Q 004114 469 SNMT--ERDLTSWDTMITGFAKN---------GLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL--------GDVVE 529 (773)
Q Consensus 469 ~~M~--~~d~~tyn~LI~ay~~~---------G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~--------G~~de 529 (773)
++.. .|+..+|..+...|... |++++|+..|++..+... -+...|..+..+|... |++++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9886 46778888888889888 999999999999887532 2466788888888888 88999
Q ss_pred HHHHHHHHHHhcCCCC----CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 004114 530 GMLHFESMSKDYGIVP----SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRC 601 (773)
Q Consensus 530 A~~if~~M~~~~Gi~P----d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~ 601 (773)
|+..|++..+. .| +...|..+..+|.+.|++++|.+.|++. .+.| +...|..+..++...|++++|...
T Consensus 240 A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 240 ALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888664 34 6778888999999999999999999877 3344 466788888888888877776653
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.86 E-value=1.1e-07 Score=103.36 Aligned_cols=229 Identities=13% Similarity=0.046 Sum_probs=178.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC----CCHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQC-ISVD----LPTFSQLMQACGDAKALEEAKAVHEHVERL--LSP----LRVSTYN 449 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~G-v~Pd----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~--G~~----pd~~tyn 449 (773)
.-..+...|++++|+..|.+..+.- -.+| ..++..+-.++...|++++|...+.+.++. ... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3445678999999999999997641 1123 357888888899999999999999988775 111 1245788
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhc-----CC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 004114 450 GILKMYSECDSMDDAFSVFSNMTE-----RD----LTSWDTMITGFAKNGLGEDAVDIFSQFKQA----GLKP-DDQIFI 515 (773)
Q Consensus 450 aLI~ay~k~G~l~eA~~lf~~M~~-----~d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~----Gv~P-d~~Ty~ 515 (773)
.|-.+|...|++++|+..|++..+ .+ ..+|..|...|...|++++|+..|++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999988763 12 247888999999999999999999998762 3323 356788
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhc---CCCCCcchhhhHHHHHHhCCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 004114 516 GVFSACSALGDVVEGMLHFESMSKDY---GIVPSMKHYVSIVDMLGSTGY---LDEALEFIEKMPMEPD-VDVWEKLMNL 588 (773)
Q Consensus 516 ~LL~a~~~~G~~deA~~if~~M~~~~---Gi~Pd~~tyn~LI~~y~r~G~---l~eA~~lf~~M~~~Pd-~~ty~~LI~a 588 (773)
.+..++...|++++|..++++..+-. +-+.....+..|-..|...|+ +++|..++++.+..|+ ..++..|...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 89999999999999999998865431 111122335677888889999 9999999999965554 3467778889
Q ss_pred HHHcCChhHHHHHHHHHHHcC
Q 004114 589 CRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 589 ~~~~G~~e~A~~~~e~m~el~ 609 (773)
|...|++++|...++...++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887764
No 64
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.85 E-value=1.5e-07 Score=88.96 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=107.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
.+...+...|++++|+++|+++.+.. +.+..++..+..++...|++++|..+++.+++.. +.+..++..+...|.+.|
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhc
Confidence 35666777788888888777765542 2356667777777777777888887777777663 335666777777777777
Q ss_pred ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004114 460 SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFES 536 (773)
Q Consensus 460 ~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~ 536 (773)
++++|..+|+++.+ .+...|..+...|...|++++|+.+|+++.+.. ..+..++..+...+...|++++|..+++.
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777776653 356667777777777777777777777776643 22455666677777777777777777766
Q ss_pred HHH
Q 004114 537 MSK 539 (773)
Q Consensus 537 M~~ 539 (773)
+.+
T Consensus 170 ~~~ 172 (186)
T 3as5_A 170 ANE 172 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 65
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.85 E-value=7.5e-08 Score=97.57 Aligned_cols=218 Identities=12% Similarity=0.090 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCC-CHHHHHHHHHHHHhCCChHH
Q 004114 391 VKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL------LSPL-RVSTYNGILKMYSECDSMDD 463 (773)
Q Consensus 391 ~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~------G~~p-d~~tynaLI~ay~k~G~l~e 463 (773)
+++|++++.++..........++..+..++...|++++|...+.++++. +-.| ...++..+..+|...|++++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 103 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence 3456666665553332334567888999999999999999999998875 2222 35688899999999999999
Q ss_pred HHHHHHHhhc-------C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHcCC
Q 004114 464 AFSVFSNMTE-------R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA------GLKPD-DQIFIGVFSACSALG 525 (773)
Q Consensus 464 A~~lf~~M~~-------~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~------Gv~Pd-~~Ty~~LL~a~~~~G 525 (773)
|+.+|++..+ + ...+|..+...|...|++++|+.+|++..+. .-.|+ ..++..+..++...|
T Consensus 104 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999988763 1 3567888999999999999999999999775 22333 457888889999999
Q ss_pred ChHHHHHHHHHHHHhc------CCCCCc-chhhhHHHHHHh------CCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHH
Q 004114 526 DVVEGMLHFESMSKDY------GIVPSM-KHYVSIVDMLGS------TGYLDEALEFIEKMP-MEPD-VDVWEKLMNLCR 590 (773)
Q Consensus 526 ~~deA~~if~~M~~~~------Gi~Pd~-~tyn~LI~~y~r------~G~l~eA~~lf~~M~-~~Pd-~~ty~~LI~a~~ 590 (773)
++++|..+++++.+.. ...+.. ..+..+...+.. ...+.++..+++.+. ..|+ ..++..|..+|.
T Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 263 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR 263 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999998876531 122332 233333333332 223455555555553 2232 567888999999
Q ss_pred HcCChhHHHHHHHHHHHc
Q 004114 591 MHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 591 ~~G~~e~A~~~~e~m~el 608 (773)
..|++++|...++...++
T Consensus 264 ~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 264 RQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887754
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.83 E-value=5.7e-07 Score=95.10 Aligned_cols=183 Identities=11% Similarity=0.078 Sum_probs=147.3
Q ss_pred HcCCH-------HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-HH-HHHHHHHHHH
Q 004114 387 KEGKV-------KEAIEVLGLLEKQCISV-DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR-VS-TYNGILKMYS 456 (773)
Q Consensus 387 ~~G~~-------~eAl~lf~~M~~~Gv~P-d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd-~~-tynaLI~ay~ 456 (773)
+.|++ ++|..+|++..+. +.| +...|..+...+.+.|++++|..+|+.+++. .|+ .. +|..+...+.
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~ 145 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFAR 145 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHH
Confidence 46886 8999999999873 244 5568999999999999999999999999984 443 33 8999999999
Q ss_pred hCCChHHHHHHHHHhhcC---CHhHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTER---DLTSWDTMITGFA-KNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~-~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
+.|++++|+.+|++..+. +...|........ ..|+.++|..+|++..+.. .-+...+..++..+.+.|++++|+.
T Consensus 146 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~ 224 (308)
T 2ond_A 146 RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRV 224 (308)
T ss_dssp HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999998753 3344543333322 2699999999999998752 2256778888999999999999999
Q ss_pred HHHHHHHhcCCCCC--cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 533 HFESMSKDYGIVPS--MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 533 if~~M~~~~Gi~Pd--~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+|++..+...+.|+ ...|..++..+.+.|++++|..+++++
T Consensus 225 ~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 225 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998775334553 568888999999999999999999887
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.82 E-value=1.1e-08 Score=105.75 Aligned_cols=191 Identities=10% Similarity=0.033 Sum_probs=122.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCC-CHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQ------CI-SVDLPTFSQLMQACGDAKALEEAKAVHEHVERL------LSPL-RVS 446 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~------Gv-~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~------G~~p-d~~ 446 (773)
+...|...|++++|+.+|++..+. +- .....++..+...+...|++++|..++.++++. +..| ...
T Consensus 75 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 75 LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 444555555555555555555432 11 223557888888899999999999999988875 2222 355
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcC-----------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCC
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTER-----------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA-------GLK 508 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~~-----------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~-------Gv~ 508 (773)
++..+...|.+.|++++|+.+|+++.+. ...+|..+...|...|++++|+.+|+++.+. ...
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 7888899999999999999999887531 2457888999999999999999999998763 122
Q ss_pred CCHH-------HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 509 PDDQ-------IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 509 Pd~~-------Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+... .+..+...+...+.+.++...+...... -+....++..|..+|.+.|++++|.++|++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2221 1222223333444555555555554332 1224567888999999999999999999764
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.82 E-value=7.6e-08 Score=108.94 Aligned_cols=190 Identities=12% Similarity=0.057 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh-HHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHH
Q 004114 426 LEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSM-DDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQ 501 (773)
Q Consensus 426 le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l-~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~e 501 (773)
++++...+....+. .+.+...+..+-.+|...|++ ++|++.|++..+ | +...|..+..+|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56677777765543 234788899999999999999 999999998863 3 678999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcC---------CChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC--------CCHH
Q 004114 502 FKQAGLKPDDQIFIGVFSACSAL---------GDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST--------GYLD 564 (773)
Q Consensus 502 M~~~Gv~Pd~~Ty~~LL~a~~~~---------G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~--------G~l~ 564 (773)
..+. .|+..++..+-.++... |++++|+.+|++..+. -+-+...|..|..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9875 58888889999999999 9999999999998764 233577888999999988 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcC
Q 004114 565 EALEFIEKM-PMEP----DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAG 620 (773)
Q Consensus 565 eA~~lf~~M-~~~P----d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG 620 (773)
+|.+.|++. .+.| +...|..+..+|...|++++|...++...+++|++..++...+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 299 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999987 4455 6889999999999999999999999999999999875444333
No 69
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.81 E-value=2.2e-06 Score=94.79 Aligned_cols=284 Identities=8% Similarity=-0.058 Sum_probs=192.4
Q ss_pred cHHHHHHHHhhchHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHhhhhc-----------------cHHHHHHH
Q 004114 323 QWDQSRRQYQQNPNEGQYQSYSGNIQ-NGMMASQVLNNCKHEDDFAEASRSSQNN-----------------GTLEQLDG 384 (773)
Q Consensus 323 ~w~~a~~~f~~~~~~~~~m~~~gl~p-d~~~~n~LI~~y~k~g~~~~A~~v~~~~-----------------~~~~LI~a 384 (773)
+...++..|+++.++..........| ...+|+.+-.+|...|++++|...+.-. ....+-.+
T Consensus 66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~ 145 (472)
T 4g1t_A 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT 145 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHH
Confidence 34677777877776655443333333 4568999999999999999998742100 01112233
Q ss_pred HHH--cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-
Q 004114 385 LVK--EGKVKEAIEVLGLLEKQCISVD-LPTFSQLMQA---CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE- 457 (773)
Q Consensus 385 ~~~--~G~~~eAl~lf~~M~~~Gv~Pd-~~ty~~LL~a---~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k- 457 (773)
+.+ .+++++|++.|++..+. .|+ ...+..+..+ +...++.++|.+.++..++.. +.+..++..+...+.+
T Consensus 146 ~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~ 222 (472)
T 4g1t_A 146 RLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKM 222 (472)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHC
T ss_pred HHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHH
Confidence 444 35799999999999876 344 4444444433 445677788999998888864 3356666666555555
Q ss_pred ---CCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc-------
Q 004114 458 ---CDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSA------- 523 (773)
Q Consensus 458 ---~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~------- 523 (773)
.++.++|.++|++..+ .+..+|..+...|...|++++|+..|++..+. .|+ ..++..+-.++..
T Consensus 223 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~ 300 (472)
T 4g1t_A 223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMN 300 (472)
T ss_dssp C------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhh
Confidence 4678899999987763 36778999999999999999999999999875 354 4455554444322
Q ss_pred ------------CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHH----HHHHH
Q 004114 524 ------------LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDV----WEKLM 586 (773)
Q Consensus 524 ------------~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~t----y~~LI 586 (773)
....++|..++....+. -+.+..++..+..+|.+.|++++|.+.|++. .+.|+... +..+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~ 378 (472)
T 4g1t_A 301 LRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYG 378 (472)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 12356677777766553 2345678889999999999999999999876 34444332 22222
Q ss_pred H-HHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 587 N-LCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 587 ~-a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
. .....|+.++|...++...++.|+..
T Consensus 379 ~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 379 NFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 2 23467899999999999999998763
No 70
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.81 E-value=2e-06 Score=106.58 Aligned_cols=231 Identities=15% Similarity=0.150 Sum_probs=164.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHhh----hhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004114 348 QNGMMASQVLNNCKHEDDFAEASRSS----QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDA 423 (773)
Q Consensus 348 pd~~~~n~LI~~y~k~g~~~~A~~v~----~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~ 423 (773)
-+..+|..+-.++.+.|++++|...+ .+..+.+++.+|.+.|++++|++.|...++.. ++....+.+.-+|++.
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT 1180 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh
Confidence 34677888888888888888888754 23344568888888888888888887665543 3333344577788888
Q ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 424 KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 424 g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
+++++...+. + .++...|..+-+.|...|++++|..+|... ..|..+..+|++.|++++|++.+++-
T Consensus 1181 ~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1181 NRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred cCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 8777544332 2 345566667888888888888888888875 47888888888888888888888765
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHH
Q 004114 504 QAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDV 581 (773)
Q Consensus 504 ~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~t 581 (773)
-+..+|.-+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++.- ++.| ....
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence 3557888888888888888887765432 3345667778899999999999999999765 5444 3557
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH
Q 004114 582 WEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 582 y~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
|+-|..++++.. .++..+.++.+
T Consensus 1317 ftELaiLyaKy~-peklmEhlk~f 1339 (1630)
T 1xi4_A 1317 FTELAILYSKFK-PQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHhCC-HHHHHHHHHHH
Confidence 777777777654 33334444433
No 71
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.81 E-value=6.6e-07 Score=110.83 Aligned_cols=224 Identities=13% Similarity=0.063 Sum_probs=144.7
Q ss_pred hcCChhHHHHhh----hhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004114 362 HEDDFAEASRSS----QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVE 437 (773)
Q Consensus 362 k~g~~~~A~~v~----~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~ 437 (773)
..+++++|.++. ....+..+-.++.+.|++++|++.|.+. -|...|.-++.+|.+.|++++|.+.+...+
T Consensus 1088 ~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred HHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555554432 2222233666777777777777777542 256666677777777777777777777665
Q ss_pred HhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004114 438 RLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGV 517 (773)
Q Consensus 438 k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~L 517 (773)
+.. ++..+.+.++.+|+|.+++++...+. ..++...|..+-..|...|++++|..+|... ..|..+
T Consensus 1162 k~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rL 1227 (1630)
T 1xi4_A 1162 KKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 1227 (1630)
T ss_pred hhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHH
Confidence 543 33333344777777777776533332 3445566666777777777777777777663 367777
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 004114 518 FSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLEL 597 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~ 597 (773)
..++.+.|++++|.+.+.+. -+..+|..+..+|...|++..|......+ .-+...+..++..|.+.|.+++
T Consensus 1228 A~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777766543 24466777777777777777777766543 3345566688888888899999
Q ss_pred HHHHHHHHHHcCCCCch
Q 004114 598 GDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 598 A~~~~e~m~el~p~~~~ 614 (773)
|..+++....+++.+..
T Consensus 1299 AI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A 1299 LITMLEAALGLERAHMG 1315 (1630)
T ss_pred HHHHHHHHhccChhHhH
Confidence 98888888887766643
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.76 E-value=3.9e-07 Score=91.09 Aligned_cols=196 Identities=9% Similarity=0.070 Sum_probs=149.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHH
Q 004114 408 VDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMIT 484 (773)
Q Consensus 408 Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ 484 (773)
.|+..+..+-..+...|++++|...|...++...+++..++..+..+|.+.|++++|+..|++..+ | +..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 466788888888999999999999999999986546777777799999999999999999998874 3 5678999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC---cchhhhH
Q 004114 485 GFAKNGLGEDAVDIFSQFKQAGLKPD-D-------QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS---MKHYVSI 553 (773)
Q Consensus 485 ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~-------~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd---~~tyn~L 553 (773)
.|...|++++|+..|++..+. .|+ . .+|..+-..+...|++++|+..|.+..+ +.|+ ...+..|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999874 344 3 3467777788889999999999988754 4565 4566666
Q ss_pred HHHHHhCCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 554 VDMLGSTGYLDEALEFIEKM-PM-EPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 554 I~~y~r~G~l~eA~~lf~~M-~~-~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
..+|...|+ .+++++ .+ ..+...|..+.. ...+.+++|...++...+++|++..+
T Consensus 160 ~~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 160 GVLFYNNGA-----DVLRKATPLASSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp HHHHHHHHH-----HHHHHHGGGTTTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHH-----HHHHHHHhcccCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 677765443 333333 11 223445544443 34566899999999999999998644
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.75 E-value=1e-06 Score=95.53 Aligned_cols=225 Identities=12% Similarity=0.070 Sum_probs=174.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CC---CC-CHHHHHHH
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQC-ISVD----LPTFSQLMQACGDAKALEEAKAVHEHVERL--LS---PL-RVSTYNGI 451 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~G-v~Pd----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~--G~---~p-d~~tynaL 451 (773)
..+...|++++|+..|.+..+.- -.+| ..++..+..++...|+++.|...+.+.++. .. .+ ...+++.|
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34568999999999999987642 1133 346778888899999999999999988764 11 11 24578889
Q ss_pred HHHHHhCCChHHHHHHHHHhhc-----CC----HhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 004114 452 LKMYSECDSMDDAFSVFSNMTE-----RD----LTSWDTMITGFAKNGLGEDAVDIFSQFKQ-----AGLKPDDQIFIGV 517 (773)
Q Consensus 452 I~ay~k~G~l~eA~~lf~~M~~-----~d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~-----~Gv~Pd~~Ty~~L 517 (773)
-.+|...|++++|+..|++..+ .+ ..++..|...|...|++++|+..|++... ... ....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHH
Confidence 9999999999999999987763 12 35788899999999999999999999876 322 225678888
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCC---cchhhhHHHHHHhCCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 004114 518 FSACSALGDVVEGMLHFESMSKDYGIVPS---MKHYVSIVDMLGSTGY---LDEALEFIEKMPMEPD-VDVWEKLMNLCR 590 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~~~Gi~Pd---~~tyn~LI~~y~r~G~---l~eA~~lf~~M~~~Pd-~~ty~~LI~a~~ 590 (773)
..++.+.|+.++|..++++..+...-..+ ...+..|-..|...++ +.+|..++++.+..|+ ...+..|...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 99999999999999999988765322222 3345566667778888 9999999999764444 346667888999
Q ss_pred HcCChhHHHHHHHHHHHc
Q 004114 591 MHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 591 ~~G~~e~A~~~~e~m~el 608 (773)
..|+++.|...++...++
T Consensus 348 ~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999998887654
No 74
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.73 E-value=2.2e-06 Score=97.60 Aligned_cols=107 Identities=6% Similarity=0.039 Sum_probs=58.3
Q ss_pred HhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhh----ccHHHHHHHHH-----HcCCHHHHHH----H
Q 004114 331 YQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQN----NGTLEQLDGLV-----KEGKVKEAIE----V 397 (773)
Q Consensus 331 f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~----~~~~~LI~a~~-----~~G~~~eAl~----l 397 (773)
++.+..+...+++. ++-+...|..++..+.+.|++++|+.++.- .....+-..|+ ..|+.++|.+ +
T Consensus 28 ~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 28 IDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp HHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 34444444444432 344566777777777777777777775321 11112222222 3466665554 5
Q ss_pred HHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHH
Q 004114 398 LGLLEKQ-CISV-DLPTFSQLMQACGD---------AKALEEAKAVHEHVER 438 (773)
Q Consensus 398 f~~M~~~-Gv~P-d~~ty~~LL~a~~~---------~g~le~A~~l~~~m~k 438 (773)
|++.+.. |..| +...|...+....+ .|+++.|+.+|+..++
T Consensus 107 ~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 5555432 4443 34555555554433 5677888888877776
No 75
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.71 E-value=5.2e-07 Score=99.91 Aligned_cols=286 Identities=11% Similarity=-0.039 Sum_probs=161.0
Q ss_pred cHHHHHHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CChhHHHHhhhhc---------cHHH---HHHHHHHc
Q 004114 323 QWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHE--DDFAEASRSSQNN---------GTLE---QLDGLVKE 388 (773)
Q Consensus 323 ~w~~a~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~--g~~~~A~~v~~~~---------~~~~---LI~a~~~~ 388 (773)
++..+...|+.+..+..............++..+-.++.+. ++.++|...+.-. .... +...+...
T Consensus 109 ~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 34555555655544443222111122345555555555554 4678888753210 0011 22234566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHH
Q 004114 389 GKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDA----KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDA 464 (773)
Q Consensus 389 G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~----g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA 464 (773)
++.++|++.|++..+.. +.+..++..+...+... ++.++|.+++++..+.. +.+..++..+...|.+.|++++|
T Consensus 189 ~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A 266 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKA 266 (472)
T ss_dssp CCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHH
Confidence 88888999998887753 22455666655555543 56788999998888764 34677888899999999999999
Q ss_pred HHHHHHhhc--C-CHhHHHHHHHHHHHc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004114 465 FSVFSNMTE--R-DLTSWDTMITGFAKN-------------------GLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS 522 (773)
Q Consensus 465 ~~lf~~M~~--~-d~~tyn~LI~ay~~~-------------------G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~ 522 (773)
+..|++..+ | +..+|..+..+|... +..++|+..|++..+... .+..++..+-..+.
T Consensus 267 ~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 267 IELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHH
Confidence 999988763 3 555666665555322 235677777777766431 22345677778888
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCCcc----hhhhHHH-HHHhCCCHHHHHHHHHhC-CCCCC------------------
Q 004114 523 ALGDVVEGMLHFESMSKDYGIVPSMK----HYVSIVD-MLGSTGYLDEALEFIEKM-PMEPD------------------ 578 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~Gi~Pd~~----tyn~LI~-~y~r~G~l~eA~~lf~~M-~~~Pd------------------ 578 (773)
..|++++|+.+|++..+. .|+.. .+..+.. .+...|+.++|.+.|++. .+.|+
T Consensus 346 ~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~ 422 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMR 422 (472)
T ss_dssp HTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH
Confidence 999999999998887553 23321 1222222 234678888888887654 33333
Q ss_pred -------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch
Q 004114 579 -------VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 579 -------~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~ 614 (773)
..+|..|-.++...|++++|...++...++.|..++
T Consensus 423 l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHHCC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 344555555555555555555555555555554443
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.70 E-value=1.8e-06 Score=92.88 Aligned_cols=249 Identities=13% Similarity=0.012 Sum_probs=156.3
Q ss_pred HHHHHhcCChhHHHHhhh-------hc-------cHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHH
Q 004114 357 LNNCKHEDDFAEASRSSQ-------NN-------GTLEQLDGLVKEGKVKEAIEVLGLLEKQCI-SVDL----PTFSQLM 417 (773)
Q Consensus 357 I~~y~k~g~~~~A~~v~~-------~~-------~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv-~Pd~----~ty~~LL 417 (773)
-..+...|++++|...+. .. ....+...+...|++++|++.+.+..+..- ..+. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556677777766421 01 111244566778888888888887764210 1122 2345566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh----CCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C------CHhHHHHH
Q 004114 418 QACGDAKALEEAKAVHEHVERL----LSP--L-RVSTYNGILKMYSECDSMDDAFSVFSNMTE--R------DLTSWDTM 482 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~----G~~--p-d~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~------d~~tyn~L 482 (773)
..+...|++++|...+++.++. +.. | ...++..+...|...|++++|+..+++..+ + ...+|..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 6677888888888888877654 222 2 234566677788888888888888887652 1 13467777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-----cchhh
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPD--DQIFI----GVFSACSALGDVVEGMLHFESMSKDYGIVPS-----MKHYV 551 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd--~~Ty~----~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-----~~tyn 551 (773)
...+...|++++|...+++.....-.++ ..... .++..+...|++++|..++...... .|. ...+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP---EFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC---CCTTCGGGHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC---CCCcchhhHHHHH
Confidence 7888888888888888888765321111 11111 2333466888888888888766432 221 11345
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM-------PMEPDV-DVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M-------~~~Pd~-~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
.+..++...|++++|.+++++. +..++. .++..+..++...|+.++|...++...++
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6677788888888888888765 211122 25556666778888888888877776654
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.70 E-value=3.1e-07 Score=96.61 Aligned_cols=96 Identities=8% Similarity=-0.103 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCc----
Q 004114 478 SWDTMITGFAKN-GLGEDAVDIFSQFKQAGLK-PD----DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSM---- 547 (773)
Q Consensus 478 tyn~LI~ay~~~-G~~deAl~Lf~eM~~~Gv~-Pd----~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~---- 547 (773)
+|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|+.+|++..+...-.+..
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 445555555553 5555555555554432100 01 2345555555666666666666666554421000111
Q ss_pred -chhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 548 -KHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 548 -~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
..|..+..+|...|++++|...|++.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 02344455556666666666666654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.69 E-value=8.3e-06 Score=87.61 Aligned_cols=227 Identities=11% Similarity=0.009 Sum_probs=164.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCC----HHHHHHHH
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLP----TFSQLMQACGDAKALEEAKAVHEHVERLLS-PLR----VSTYNGIL 452 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~----ty~~LL~a~~~~g~le~A~~l~~~m~k~G~-~pd----~~tynaLI 452 (773)
...+...|++++|+.++.+.....-..+.. ++..+...+...|++++|...+.+.++..- ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345668999999999999988764222332 455566677889999999999998876411 112 23456778
Q ss_pred HHHHhCCChHHHHHHHHHhhc----------C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHH
Q 004114 453 KMYSECDSMDDAFSVFSNMTE----------R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLK--P--DDQIFIGV 517 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~~----------~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~--P--d~~Ty~~L 517 (773)
..|...|++++|+..+++..+ + ...++..+...|...|++++|..++++.....-. + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 889999999999999987753 1 1245667788899999999999999998764321 1 23567778
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhh-----hHHHHHHhCCCHHHHHHHHHhC-CCCCC-----HHHHHHHH
Q 004114 518 FSACSALGDVVEGMLHFESMSKDYGIVPSMKHYV-----SIVDMLGSTGYLDEALEFIEKM-PMEPD-----VDVWEKLM 586 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn-----~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-----~~ty~~LI 586 (773)
...+...|++++|..++++......-......+. .++..+...|++++|.+++++. ...|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 8888999999999999998765321111111222 2334577999999999999988 22221 33567788
Q ss_pred HHHHHcCChhHHHHHHHHHHHc
Q 004114 587 NLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 587 ~a~~~~G~~e~A~~~~e~m~el 608 (773)
.++...|++++|...++...+.
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999988877654
No 79
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.68 E-value=5.5e-07 Score=79.99 Aligned_cols=130 Identities=17% Similarity=0.259 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG 558 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~ 558 (773)
|..+...|...|++++|+.+|+++.+... .+..++..+...+...|++++|..+++++.+. .+.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 44444455555555555555555544321 13344444445555555555555555554433 1223344455555555
Q ss_pred hCCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 559 STGYLDEALEFIEKM-PM-EPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 559 r~G~l~eA~~lf~~M-~~-~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
..|++++|.++++++ .. ..+..+|..+...+...|+++.|...++.+.++.|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 555555555555554 11 123455556666666666666666666666555543
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.61 E-value=2e-06 Score=90.34 Aligned_cols=205 Identities=12% Similarity=0.065 Sum_probs=149.0
Q ss_pred ChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 004114 365 DFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQ----CISVD-LPTFSQLMQACGDAKALEEAKAVHEHVERL 439 (773)
Q Consensus 365 ~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~----Gv~Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~k~ 439 (773)
++++|...+ ......|...|++++|++.|.+..+. |-.++ ..+|..+..++...|++++|...++..++.
T Consensus 32 ~~~~A~~~~-----~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 106 (292)
T 1qqe_A 32 KFEEAADLC-----VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI 106 (292)
T ss_dssp HHHHHHHHH-----HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 366776642 22456778889999999888877653 32222 458889999999999999999999988765
Q ss_pred CCC-CC----HHHHHHHHHHHHhC-CChHHHHHHHHHhhc--C---C----HhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 440 LSP-LR----VSTYNGILKMYSEC-DSMDDAFSVFSNMTE--R---D----LTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 440 G~~-pd----~~tynaLI~ay~k~-G~l~eA~~lf~~M~~--~---d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
-.. .+ ..++..|-.+|.+. |++++|+..|++..+ | + ..+|..+...|.+.|++++|+..|++..+
T Consensus 107 ~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 211 11 45788899999996 999999999998763 1 1 35788899999999999999999999988
Q ss_pred CCCCCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcc------hhhhHHHHHH--hCCCHHHHHHHH
Q 004114 505 AGLKPDD------QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMK------HYVSIVDMLG--STGYLDEALEFI 570 (773)
Q Consensus 505 ~Gv~Pd~------~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~------tyn~LI~~y~--r~G~l~eA~~lf 570 (773)
....... .+|..+..++...|++++|...|++.. .+.|+.. .+..|+.+|. ..+++++|.+.|
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ---SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG---CC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6433222 156777788889999999999998764 3445422 2344556664 467899999999
Q ss_pred HhC-CCCC
Q 004114 571 EKM-PMEP 577 (773)
Q Consensus 571 ~~M-~~~P 577 (773)
+.+ .+.|
T Consensus 264 ~~~~~l~~ 271 (292)
T 1qqe_A 264 DNFMRLDK 271 (292)
T ss_dssp TTSSCCCH
T ss_pred ccCCccHH
Confidence 877 4444
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.61 E-value=5.4e-07 Score=107.54 Aligned_cols=161 Identities=11% Similarity=0.180 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSA 520 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a 520 (773)
..+++.|-.+|.+.|++++|++.|++..+ | +..+|..|-.+|.+.|++++|++.|++.++. .|+ ..+|..|-.+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 44566666666666666666666665542 2 4556666666666666666666666666553 343 4466666666
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhH
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLEL 597 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~ 597 (773)
+...|++++|++.|++..+- .| +...|..|..+|.+.|++++|.+.|++. .+.|+ ...|..|..++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 66677777777666665442 33 3456667777777777777777777665 33443 5677777777778888887
Q ss_pred HHHHHHHHHHcCC
Q 004114 598 GDRCAEIVEQLDP 610 (773)
Q Consensus 598 A~~~~e~m~el~p 610 (773)
|++.++.+.++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 7777777666543
No 82
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.61 E-value=1.3e-06 Score=77.55 Aligned_cols=125 Identities=15% Similarity=0.225 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAK 488 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~ 488 (773)
.|..+...+...|++++|..++..+++.. +.+..++..+...|...|++++|+.+|+++.+ .+...|..+...|..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34455555666666666666666665543 22455555566666666666666666665542 244455555556666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004114 489 NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 489 ~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
.|++++|+.+|+++.... ..+..++..+..++...|++++|..++.++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 666666666666555432 1234445555555555566666655555553
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.52 E-value=2.6e-06 Score=101.64 Aligned_cols=154 Identities=12% Similarity=0.158 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAK 488 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~ 488 (773)
+|+.|-.++.+.|++++|.+.|++.++.. +-+..++..|-.+|.+.|++++|+..|++..+ | +..+|..|-.+|..
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44444444444444444444444444432 11234444444444444444444444444432 2 33444444444444
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHH
Q 004114 489 NGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEA 566 (773)
Q Consensus 489 ~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA 566 (773)
.|++++|++.|++..+. .|+ ..+|..|-.++...|++++|+..|++..+. .|+ ...|..|..+|...|++++|
T Consensus 90 ~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhcccHHHH
Confidence 55555555554444442 222 334444444444455555555444444332 222 34444444445555554444
Q ss_pred HHHHH
Q 004114 567 LEFIE 571 (773)
Q Consensus 567 ~~lf~ 571 (773)
.+.++
T Consensus 165 ~~~~~ 169 (723)
T 4gyw_A 165 DERMK 169 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.51 E-value=4.9e-06 Score=82.94 Aligned_cols=190 Identities=11% Similarity=0.071 Sum_probs=142.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 378 TLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 378 ~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
+..+-..+.+.|++++|+..|.+..+..-.++...+..+..++...|++++|...+...++... -+..++..+..+|.+
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHH
Confidence 3346678889999999999999999875447888888888899999999999999999998642 256788999999999
Q ss_pred CCChHHHHHHHHHhhc--C-CH-------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcC
Q 004114 458 CDSMDDAFSVFSNMTE--R-DL-------TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD---DQIFIGVFSACSAL 524 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~--~-d~-------~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd---~~Ty~~LL~a~~~~ 524 (773)
.|+.++|+..|++..+ | +. ..|..+-..+...|++++|++.|++..+. .|+ ..++..+-.++..
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~- 165 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYN- 165 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHH-
Confidence 9999999999998874 3 44 45888888999999999999999999874 676 3456666666644
Q ss_pred CChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCH
Q 004114 525 GDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDV 579 (773)
Q Consensus 525 G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~ 579 (773)
.+..+++.+... ...+...|..+. ....+.+++|...|++. .+.|+.
T Consensus 166 ----~~~~~~~~a~~~--~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 166 ----NGADVLRKATPL--ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp ----HHHHHHHHHGGG--TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ----HHHHHHHHHHhc--ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCC
Confidence 344445555332 122333443333 33456688899888876 444543
No 85
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.48 E-value=1e-05 Score=87.58 Aligned_cols=214 Identities=11% Similarity=-0.050 Sum_probs=159.4
Q ss_pred HHHHHHhcCChhHHHHhhhh---------------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-----CHHHHH
Q 004114 356 VLNNCKHEDDFAEASRSSQN---------------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCI-SV-----DLPTFS 414 (773)
Q Consensus 356 LI~~y~k~g~~~~A~~v~~~---------------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv-~P-----d~~ty~ 414 (773)
+-..+...|++++|...+.. ..+..+-..|...|++++|+..+.+..+.-- .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44567788999999885311 1112377788999999999999998875311 11 235778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC-CC----HHHHHHHHHHHHhCCChHHHHHHHHHhhc-----CC----HhHHH
Q 004114 415 QLMQACGDAKALEEAKAVHEHVERLLSP-LR----VSTYNGILKMYSECDSMDDAFSVFSNMTE-----RD----LTSWD 480 (773)
Q Consensus 415 ~LL~a~~~~g~le~A~~l~~~m~k~G~~-pd----~~tynaLI~ay~k~G~l~eA~~lf~~M~~-----~d----~~tyn 480 (773)
.+-.++...|++++|...+...++..-. .+ ..++..|-.+|.+.|++++|+..|++..+ .+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888899999999999999988765111 12 34788899999999999999999988764 33 45788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHhcCCCCC-cchhhh
Q 004114 481 TMITGFAKNGLGEDAVDIFSQFKQAG----LKPDDQIFIGVFSACSALGD---VVEGMLHFESMSKDYGIVPS-MKHYVS 552 (773)
Q Consensus 481 ~LI~ay~~~G~~deAl~Lf~eM~~~G----v~Pd~~Ty~~LL~a~~~~G~---~deA~~if~~M~~~~Gi~Pd-~~tyn~ 552 (773)
.+...|.+.|++++|+..|++..+.. -......+..+-..+...|+ +++|..+++.. +..|+ ...+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK----MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----cCHHHHHHHHHH
Confidence 89999999999999999999876531 11112345667777778888 77777777655 23332 456778
Q ss_pred HHHHHHhCCCHHHHHHHHHhC
Q 004114 553 IVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 553 LI~~y~r~G~l~eA~~lf~~M 573 (773)
|...|.+.|++++|.+.|++.
T Consensus 345 la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.45 E-value=3.7e-06 Score=90.00 Aligned_cols=177 Identities=12% Similarity=0.099 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-----CHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 429 AKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER-----DLTSWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 429 A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~-----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
|...++++++.+ .++..+...+..+|...|++++|++++.+.... +...+-.++..|.+.|+.+.|.+++++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555554443 334444445666666667777777777665322 34556666677777777777777777776
Q ss_pred HCCCCC-----CHHHHHHHHHHHHc----CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-
Q 004114 504 QAGLKP-----DDQIFIGVFSACSA----LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM- 573 (773)
Q Consensus 504 ~~Gv~P-----d~~Ty~~LL~a~~~----~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M- 573 (773)
+. .| +..+...|+.++.. .++..+|..+|+++... .|+..+-..|+.++.+.|++++|.++++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 53 45 24455555555222 23677777777776543 233223334444677777777777777654
Q ss_pred CC----------CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 574 PM----------EP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 574 ~~----------~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
.. .| |..+...+|......|+ .|.+.++.+.+..|+++
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 11 13 45566566666666675 67888888888888886
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.45 E-value=2.5e-06 Score=91.27 Aligned_cols=189 Identities=11% Similarity=0.063 Sum_probs=139.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS-PLRVSTYNGILKMYSECD 459 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~-~pd~~tynaLI~ay~k~G 459 (773)
++..|...+ |+..|++..+.+ .++..++..+..++...|++++|++++...+..+- .-+...+..++..|.+.|
T Consensus 76 ~la~~~~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~ 150 (310)
T 3mv2_B 76 LYVQFLDTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN 150 (310)
T ss_dssp HHHHHHTTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC
Confidence 455555433 778888877665 56677777888889999999999999998877653 235778888999999999
Q ss_pred ChHHHHHHHHHhhc--CC-----HhHHHHHHHH--HHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH
Q 004114 460 SMDDAFSVFSNMTE--RD-----LTSWDTMITG--FAKNG--LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVV 528 (773)
Q Consensus 460 ~l~eA~~lf~~M~~--~d-----~~tyn~LI~a--y~~~G--~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~d 528 (773)
+.+.|.+++++|.+ || ..+..-|+.+ ....| +..+|+.+|+++.+. .|+..+-..|+.++.+.|+++
T Consensus 151 r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~ 228 (310)
T 3mv2_B 151 NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIA 228 (310)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHH
Confidence 99999999999974 41 4555556655 33334 899999999998764 466445555666889999999
Q ss_pred HHHHHHHHHHHhc-CC-------CCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC
Q 004114 529 EGMLHFESMSKDY-GI-------VPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD 578 (773)
Q Consensus 529 eA~~if~~M~~~~-Gi-------~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd 578 (773)
+|...++.+.+.+ .+ +-+..+...+|......|+ +|.+++.++ ...|+
T Consensus 229 eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 229 EAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 9999998776532 00 2356666566666677787 889999888 34555
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.44 E-value=7.6e-06 Score=83.60 Aligned_cols=184 Identities=10% Similarity=0.000 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C----CHhHH
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR---VSTYNGILKMYSECDSMDDAFSVFSNMTE--R----DLTSW 479 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd---~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~----d~~ty 479 (773)
+...+-.+...+.+.|++++|...|+.+++.... + ..++..+..+|.+.|++++|+..|++..+ | ...+|
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3444445555555666666666666666554211 2 44555556666666666666666665542 2 12344
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchh
Q 004114 480 DTMITGFAK--------NGLGEDAVDIFSQFKQAGLKPDDQ-IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHY 550 (773)
Q Consensus 480 n~LI~ay~~--------~G~~deAl~Lf~eM~~~Gv~Pd~~-Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~ty 550 (773)
..+..+|.. .|++++|+..|++..+.. |+.. ....+ ..+..+... -...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHHHH
Confidence 445555555 566666666666655532 3211 11110 000000000 00113
Q ss_pred hhHHHHHHhCCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CChhHHHHHHHHHHHcCCCCch
Q 004114 551 VSIVDMLGSTGYLDEALEFIEKM-PMEPD----VDVWEKLMNLCRMH----------GNLELGDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 551 n~LI~~y~r~G~l~eA~~lf~~M-~~~Pd----~~ty~~LI~a~~~~----------G~~e~A~~~~e~m~el~p~~~~ 614 (773)
..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++.+.+..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 45677788899999999988876 22233 35666777777765 8889999999999999998853
No 89
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.41 E-value=1.5e-05 Score=94.24 Aligned_cols=218 Identities=8% Similarity=-0.011 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 004114 392 KEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAK-AVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSN 470 (773)
Q Consensus 392 ~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~-~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~ 470 (773)
+.+..+|++.+.. +.-+...|-..+.-+...|+.++|. .+++..+.. ++.+...|-.++...-+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455677777665 3346667777777777888888996 999999875 455777888899999999999999999998
Q ss_pred hhc-------------CC------------HhHHHHHHHHHHHcCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHc
Q 004114 471 MTE-------------RD------------LTSWDTMITGFAKNGLGEDAVDIFSQFKQA-G-LKPDDQIFIGVFSACSA 523 (773)
Q Consensus 471 M~~-------------~d------------~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~-G-v~Pd~~Ty~~LL~a~~~ 523 (773)
+.+ |+ ...|-..+....+.|..+.|..+|.+.++. + ..+...+..+.|.-. .
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-I 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-T
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-h
Confidence 764 31 236888888888899999999999999876 2 233333333333322 2
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChhHH
Q 004114 524 LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP----DVDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 524 ~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P----d~~ty~~LI~a~~~~G~~e~A 598 (773)
.++.+.|..+|+...+.+. -+...+...++.....|+.+.|..+|+.. ...| ....|...+..=.++|+.+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3569999999999888733 35566778888888999999999999986 3233 357899999999999999999
Q ss_pred HHHHHHHHHcCCCCch
Q 004114 599 DRCAEIVEQLDPSRLN 614 (773)
Q Consensus 599 ~~~~e~m~el~p~~~~ 614 (773)
..+.+.+.+..|++..
T Consensus 561 ~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHhCCCCcH
Confidence 9999999999998753
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.32 E-value=8.6e-06 Score=96.43 Aligned_cols=187 Identities=10% Similarity=-0.024 Sum_probs=147.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHc
Q 004114 421 GDAKALEEAKAVHEHVE--------RLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKN 489 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~--------k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~ 489 (773)
...|++++|.+.++..+ +. .+.+...+..+..+|.+.|++++|+..|++..+ | +...|..+-.+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999988 32 234567888889999999999999999998874 3 778999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHH
Q 004114 490 GLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALE 568 (773)
Q Consensus 490 G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~ 568 (773)
|++++|++.|++..+.. | +...+..+-.++...|++++ +..|++..+. -+-+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998753 4 45678888889999999999 9999888664 22356788899999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHcCC-----hhHHHHHHHHHHHcCCCCc
Q 004114 569 FIEKM-PMEPD-VDVWEKLMNLCRMHGN-----LELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 569 lf~~M-~~~Pd-~~ty~~LI~a~~~~G~-----~e~A~~~~e~m~el~p~~~ 613 (773)
.|++. .+.|+ ...|..+..++...+. .+...++.+.+.++.+..+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~ 607 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEP 607 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTST
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcH
Confidence 99988 56676 5677777777766565 3555666667776655543
No 91
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.30 E-value=1.3e-05 Score=84.79 Aligned_cols=185 Identities=14% Similarity=0.032 Sum_probs=124.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---------CHhHH
Q 004114 414 SQLMQACGDAKALEEAKAVHEHVERL----LSPL-RVSTYNGILKMYSECDSMDDAFSVFSNMTER---------DLTSW 479 (773)
Q Consensus 414 ~~LL~a~~~~g~le~A~~l~~~m~k~----G~~p-d~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---------d~~ty 479 (773)
..+...+...|++++|...|.+..+. +-.. -..+|+.+..+|.+.|++++|+..|++..+- -..+|
T Consensus 40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~ 119 (307)
T 2ifu_A 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMAL 119 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33455677889999999988877664 2111 1447788888899999999998888865421 13567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhc---CCCCC-cchh
Q 004114 480 DTMITGFAKNGLGEDAVDIFSQFKQAG----LKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDY---GIVPS-MKHY 550 (773)
Q Consensus 480 n~LI~ay~~~G~~deAl~Lf~eM~~~G----v~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~---Gi~Pd-~~ty 550 (773)
..+...|.. |++++|+..|++....- -.+ -..++..+...+...|++++|+.+|++..+.. +..+. ...+
T Consensus 120 ~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 120 DRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 778888887 99999999998876531 111 13567778888889999999999888876531 11111 2356
Q ss_pred hhHHHHHHhCCCHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCChhHHHH
Q 004114 551 VSIVDMLGSTGYLDEALEFIEKMPMEPD------VDVWEKLMNLCRMHGNLELGDR 600 (773)
Q Consensus 551 n~LI~~y~r~G~l~eA~~lf~~M~~~Pd------~~ty~~LI~a~~~~G~~e~A~~ 600 (773)
..+..++...|++++|...|++.-+.|+ ..+...++.++ ..|+.+.+..
T Consensus 199 ~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 199 IAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 6666777788999999998876423332 12344555555 4666655544
No 92
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.25 E-value=5.6e-05 Score=81.76 Aligned_cols=212 Identities=11% Similarity=0.040 Sum_probs=156.4
Q ss_pred HHHHhcCChhHHHHhhhh---------------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C---CC-CHHHHHHH
Q 004114 358 NNCKHEDDFAEASRSSQN---------------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQC--I---SV-DLPTFSQL 416 (773)
Q Consensus 358 ~~y~k~g~~~~A~~v~~~---------------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~G--v---~P-d~~ty~~L 416 (773)
..+...|++++|...+.. .....+-..|...|++++|+..+.+..+.- . .+ ...++..+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 445678999999985311 111236778899999999999999886531 1 11 24577788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHhhc-----C---CHhHHHHHH
Q 004114 417 MQACGDAKALEEAKAVHEHVERL----LSPL-RVSTYNGILKMYSECDSMDDAFSVFSNMTE-----R---DLTSWDTMI 483 (773)
Q Consensus 417 L~a~~~~g~le~A~~l~~~m~k~----G~~p-d~~tynaLI~ay~k~G~l~eA~~lf~~M~~-----~---d~~tyn~LI 483 (773)
-.++...|++++|.+.+...++. +..+ ...++..|-.+|...|+.++|+..|++..+ . ...++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 88899999999999999988764 2111 235788899999999999999999988764 2 356788889
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHcCCC---hHHHHHHHHHHHHhcCCCCC-cchhhhHHH
Q 004114 484 TGFAKNGLGEDAVDIFSQFKQAGL---KPD-DQIFIGVFSACSALGD---VVEGMLHFESMSKDYGIVPS-MKHYVSIVD 555 (773)
Q Consensus 484 ~ay~~~G~~deAl~Lf~eM~~~Gv---~Pd-~~Ty~~LL~a~~~~G~---~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~ 555 (773)
..|.+.|++++|+..+++..+.-- .|. ...+..+-..+...++ +.+|..+++.. +..|+ ...+..|..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHH
Confidence 999999999999999999877422 122 3345555556667777 77777777653 22232 356667889
Q ss_pred HHHhCCCHHHHHHHHHhC
Q 004114 556 MLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 556 ~y~r~G~l~eA~~lf~~M 573 (773)
.|...|++++|.+.|++.
T Consensus 345 ~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 999999999999999864
No 93
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.25 E-value=0.00041 Score=74.09 Aligned_cols=229 Identities=10% Similarity=0.049 Sum_probs=176.1
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-
Q 004114 381 QLDGLVKEGKV-KEAIEVLGLLEKQCISVD-LPTFSQLMQACGDAK--ALEEAKAVHEHVERLLSPLRVSTYNGILKMY- 455 (773)
Q Consensus 381 LI~a~~~~G~~-~eAl~lf~~M~~~Gv~Pd-~~ty~~LL~a~~~~g--~le~A~~l~~~m~k~G~~pd~~tynaLI~ay- 455 (773)
.+.+..+.|.. ++|++++++++.. .|+ ...|+.--.++...+ .+++++.+++.++....+ +..+|+.--..+
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~ 114 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIG 114 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHH
Confidence 44555555555 6899999999886 454 446777777777788 999999999999997644 455666544444
Q ss_pred ---HhC---CChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 004114 456 ---SEC---DSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGE--DAVDIFSQFKQAGLKPDDQIFIGVFSACSAL 524 (773)
Q Consensus 456 ---~k~---G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~d--eAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~ 524 (773)
.+. +++++++.+++.+.+ ++..+|+--.-.+.+.|.++ ++++++++|.+.... |...|..-...+.+.
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSS
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 555 789999999999984 47788888888888899988 999999999987654 666777666666676
Q ss_pred CC------hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHc
Q 004114 525 GD------VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDE-ALEFIEKM-PM----EPDVDVWEKLMNLCRMH 592 (773)
Q Consensus 525 G~------~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~e-A~~lf~~M-~~----~Pd~~ty~~LI~a~~~~ 592 (773)
+. ++++++.+..+... -+-|...|+-+-..+.+.|+..+ +.++++++ .. ..+...+..|..++.+.
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred cccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 76 88899998888765 34467888888888888888444 66677766 21 24678999999999999
Q ss_pred CChhHHHHHHHHHHH-cCCCCchH
Q 004114 593 GNLELGDRCAEIVEQ-LDPSRLNE 615 (773)
Q Consensus 593 G~~e~A~~~~e~m~e-l~p~~~~~ 615 (773)
|+.++|.++++.+.+ .+|.+.+.
T Consensus 272 ~~~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 272 KKYNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCHHHHHHHHHHHHhccChHHHHH
Confidence 999999999999986 79876543
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.24 E-value=3.7e-05 Score=78.40 Aligned_cols=156 Identities=17% Similarity=0.104 Sum_probs=104.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCCHHHHHHHHH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVD----LPTFSQLMQACGDAKALEEAKAVHEHVERLLS--PLRVSTYNGILK 453 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~--~pd~~tynaLI~ 453 (773)
.+...+.+.|++++|+..|+++.+.. |+ ...+..+..++...|++++|...|+.+++... +....++..+..
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 36677889999999999999998763 33 56777888889999999999999999998732 122456777788
Q ss_pred HHHh--------CCChHHHHHHHHHhhc--C-CHhHH-----------------HHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 454 MYSE--------CDSMDDAFSVFSNMTE--R-DLTSW-----------------DTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 454 ay~k--------~G~l~eA~~lf~~M~~--~-d~~ty-----------------n~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
+|.+ .|++++|+..|+++.+ | +...+ -.+...|.+.|++++|+..|+++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888 9999999999998874 3 22333 23344555556666666666555543
Q ss_pred CCCCC----HHHHHHHHHHHHcC----------CChHHHHHHHHHHHH
Q 004114 506 GLKPD----DQIFIGVFSACSAL----------GDVVEGMLHFESMSK 539 (773)
Q Consensus 506 Gv~Pd----~~Ty~~LL~a~~~~----------G~~deA~~if~~M~~ 539 (773)
. |+ ...+..+..++... |++++|..+|+.+.+
T Consensus 178 ~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 178 Y--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp C--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred C--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 2 22 22344444444433 555555555555544
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.24 E-value=3.4e-05 Score=80.90 Aligned_cols=161 Identities=9% Similarity=-0.009 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--CCHhHHHH-HHHH
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--RDLTSWDT-MITG 485 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~d~~tyn~-LI~a 485 (773)
+...+..+...+...|++++|..+++.+++.. +-+...+..|..+|.+.|+.++|+.+|+++.+ |+...... +...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 33455556666667777777777777777653 22456667777777777777777777777653 43332222 2223
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHH
Q 004114 486 FAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDE 565 (773)
Q Consensus 486 y~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~e 565 (773)
+...++.++|+..|++..... ..+...+..+..++...|++++|+..|.++.+...-..+...+..|..+|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 555666666666666666542 1234456666666666777777776666665531101113455556666666666555
Q ss_pred HHHHHH
Q 004114 566 ALEFIE 571 (773)
Q Consensus 566 A~~lf~ 571 (773)
|...++
T Consensus 274 a~~~~r 279 (287)
T 3qou_A 274 LASXYR 279 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.21 E-value=4e-05 Score=76.84 Aligned_cols=182 Identities=13% Similarity=0.035 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CC-HHHHHHHHHHHHhCCChHHHHHHHHHhhc--CCH----hHHHH
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSP-LR-VSTYNGILKMYSECDSMDDAFSVFSNMTE--RDL----TSWDT 481 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~-pd-~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~d~----~tyn~ 481 (773)
...+-.+...+...|++++|...|+.+++.... +. ...+..+..+|.+.|++++|+..|+++.+ |+. .+|-.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 444555666777888899999999888876322 11 34677778888888888888888888763 321 13444
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHhcC
Q 004114 482 MITGFAK------------------NGLGEDAVDIFSQFKQAGLKPDDQ-IFIGVFSACSALGDVVEGMLHFESMSKDYG 542 (773)
Q Consensus 482 LI~ay~~------------------~G~~deAl~Lf~eM~~~Gv~Pd~~-Ty~~LL~a~~~~G~~deA~~if~~M~~~~G 542 (773)
+..+|.. .|+.++|+..|+++.+. .|+.. +...+. +. ..+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l------~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RL------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HH------HHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HH------HHHHHHHH----
Confidence 4444443 34556666666655543 23321 111000 00 00000000
Q ss_pred CCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 543 IVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD----VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 543 i~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd----~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
...-.+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.+.|...++.+....|.+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 01124566788999999999999887 22343 2568888999999999999999999999888776
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.19 E-value=2.7e-05 Score=89.43 Aligned_cols=145 Identities=7% Similarity=-0.090 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHH
Q 004114 424 KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFS 500 (773)
Q Consensus 424 g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~ 500 (773)
|++++|...+++.++.. +-+...+..+..+|.+.|++++|++.|++..+ | +...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555555544432 12344455555555555555555555554442 1 34444555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC---CCHHHHHHHHHh
Q 004114 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST---GYLDEALEFIEK 572 (773)
Q Consensus 501 eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~---G~l~eA~~lf~~ 572 (773)
+..+.. .-+...+..+..++...|++++|...|++..+. -+-+...+..+..+|... |+.++|.+.+++
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 544431 112334444444444445555554444444332 111233334444444444 444444444443
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.19 E-value=4.5e-05 Score=80.52 Aligned_cols=195 Identities=10% Similarity=0.048 Sum_probs=137.2
Q ss_pred cCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004114 363 EDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQ----CISVD-LPTFSQLMQACGDAKALEEAKAVHEHVE 437 (773)
Q Consensus 363 ~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~----Gv~Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~ 437 (773)
.+++++|...+. .+...|...|++++|++.|.+..+. +-.+. ..+|..+..++...|++++|...+++.+
T Consensus 29 ~~~~~~A~~~~~-----~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 29 KPDYDSAASEYA-----KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp SCCHHHHHHHHH-----HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred CCCHHHHHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 467777777422 2456778888888888888877543 11111 3477888888999999999999999877
Q ss_pred Hh----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-----C----HhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 438 RL----LSPL-RVSTYNGILKMYSECDSMDDAFSVFSNMTER-----D----LTSWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 438 k~----G~~p-d~~tynaLI~ay~k~G~l~eA~~lf~~M~~~-----d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
+. |-.. -..++..|-.+|.+ |++++|+..|++..+- + ..+|..+...|.+.|++++|+..|++..
T Consensus 104 ~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 104 VMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 2111 14577888888988 9999999999877631 1 4678889999999999999999999987
Q ss_pred HC----CCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcc------hhhhHHHHHHhCCCHHHHHH
Q 004114 504 QA----GLKPDD-QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMK------HYVSIVDMLGSTGYLDEALE 568 (773)
Q Consensus 504 ~~----Gv~Pd~-~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~------tyn~LI~~y~r~G~l~eA~~ 568 (773)
.. +..+.. .++..+..++...|++++|...|++.. +.|+.. ....++.++ ..|+.+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al----~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY----SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT----TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh----CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 63 222222 256677777788899999999998874 234321 223344444 4566665555
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.19 E-value=2.3e-05 Score=82.20 Aligned_cols=161 Identities=9% Similarity=-0.029 Sum_probs=128.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HH
Q 004114 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFI-GV 517 (773)
Q Consensus 442 ~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~-~L 517 (773)
+.+...+..+...+.+.|++++|+.+|++..+ | +...+..|...|.+.|++++|+.+|++.... .|+..... .+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 44556777888889999999999999998873 4 6788999999999999999999999988664 46654332 22
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcC
Q 004114 518 FSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD---VDVWEKLMNLCRMHG 593 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd---~~ty~~LI~a~~~~G 593 (773)
...+...+..++|...+++..+. -+.+...+..|..+|...|++++|.+.|.++ ...|+ ...+..|...+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33466778888898888887664 2345788899999999999999999999987 33443 678999999999999
Q ss_pred ChhHHHHHHHHHH
Q 004114 594 NLELGDRCAEIVE 606 (773)
Q Consensus 594 ~~e~A~~~~e~m~ 606 (773)
+.+.|...++...
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999887776544
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.18 E-value=3.1e-05 Score=91.64 Aligned_cols=182 Identities=13% Similarity=0.041 Sum_probs=147.5
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 386 VKEGKVKEAIEVLGLLE--------KQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 386 ~~~G~~~eAl~lf~~M~--------~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
...|++++|++.|++.. +. -..+...+..+..++...|++++|...++.+++.. +-+...|..+-.+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999998 32 13355678888889999999999999999999874 3367889999999999
Q ss_pred CCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 004114 458 CDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
.|++++|++.|++..+ | +...|..+..+|.+.|++++ ++.|++..+..- -+...|..+-.++...|++++|+..|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998873 4 67889999999999999999 999999987532 24568889999999999999999999
Q ss_pred HHHHHhcCCCCC-cchhhhHHHHHHhCC--------CHHHHHHHHHhCC
Q 004114 535 ESMSKDYGIVPS-MKHYVSIVDMLGSTG--------YLDEALEFIEKMP 574 (773)
Q Consensus 535 ~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G--------~l~eA~~lf~~M~ 574 (773)
++.. .+.|+ ...+..+..+|...+ ++++|.+.+..+.
T Consensus 558 ~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 558 DEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred Hhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 8764 35565 456666777765544 4777888887774
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.17 E-value=2.5e-05 Score=75.16 Aligned_cols=154 Identities=10% Similarity=0.007 Sum_probs=101.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHc
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSA-CSA 523 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a-~~~ 523 (773)
+..+...+.+.|++++|+..|++..+ .+...|..+...|...|++++|+..|++.... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34455667777888888888877653 35677777788888888888888888776543 2333322221111 112
Q ss_pred CCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCChhHH
Q 004114 524 LGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD---VDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 524 ~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd---~~ty~~LI~a~~~~G~~e~A 598 (773)
.+...+|...+++..+. .| +...+..+..+|...|++++|.+.|+++ ...|+ ...+..|...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233466677666553 34 4677778888888888888888888876 44443 55788888888888888888
Q ss_pred HHHHHHHH
Q 004114 599 DRCAEIVE 606 (773)
Q Consensus 599 ~~~~e~m~ 606 (773)
...++...
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
No 102
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.17 E-value=6.2e-05 Score=73.64 Aligned_cols=91 Identities=7% Similarity=-0.094 Sum_probs=67.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDV 527 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~ 527 (773)
+..+...|.+.|++++|+..|++...++..+|..+...|...|++++|+..|++..+.. ..+..++..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44556667777888888888887777777788888888888888888888888777643 22456677777777788888
Q ss_pred HHHHHHHHHHHH
Q 004114 528 VEGMLHFESMSK 539 (773)
Q Consensus 528 deA~~if~~M~~ 539 (773)
++|...|+...+
T Consensus 88 ~~A~~~~~~al~ 99 (213)
T 1hh8_A 88 DLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887777755
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.16 E-value=4.8e-05 Score=75.50 Aligned_cols=177 Identities=11% Similarity=0.092 Sum_probs=83.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDL-PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~-~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
....+.+.|++++|+..|.+..+. .|+. ..|.. . ..... ..........+..+|.+.|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~---~~~~~---------------~~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T---NVDKN---------------SEISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H---HSCTT---------------SHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h---hhcch---------------hhhhHHHHHHHHHHHHHCC
Confidence 445667888888888888888765 3332 22322 0 00000 0001112233555555566
Q ss_pred ChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCh--HHHHHH
Q 004114 460 SMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDV--VEGMLH 533 (773)
Q Consensus 460 ~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~--deA~~i 533 (773)
++++|+..|++..+ | +...|..+...|...|++++|+..|++..+. .|+ ..++..+-.++...|.. +.+...
T Consensus 69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 66666666655542 2 4555555666666666666666666665553 232 33444444444333322 222333
Q ss_pred HHHHHHhcCCCCCcc--hhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 004114 534 FESMSKDYGIVPSMK--HYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKL 585 (773)
Q Consensus 534 f~~M~~~~Gi~Pd~~--tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~L 585 (773)
+... +.|+.. .+..+-.++...|++++|...|++. .+.|+......|
T Consensus 147 ~~~~-----~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 147 YKKL-----SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHH-----hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3222 122221 1222233344456666666666554 455665444443
No 104
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.12 E-value=0.00018 Score=74.95 Aligned_cols=202 Identities=9% Similarity=-0.022 Sum_probs=132.0
Q ss_pred hHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhh------hhccHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CC
Q 004114 335 PNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSS------QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQC-IS 407 (773)
Q Consensus 335 ~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~------~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~G-v~ 407 (773)
...+..+.+....|+..+...|...+... +++..... ....+...+..+...|++++|+.++.+..+.. ..
T Consensus 31 ~~~~s~~e~g~~~~~~~~l~~i~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~ 108 (293)
T 3u3w_A 31 QSEVSRIESGAVYPSMDILQGIAAKLQIP--IIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH 108 (293)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHTCC--THHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCcC--HHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCC
Confidence 34445555555678888888887776643 11111110 01112235778889999999999999987642 22
Q ss_pred CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CC----HHHHHHHHHHHHhCCChHHHHHHHHHhhc-----
Q 004114 408 VDLP----TFSQLMQACGDAKALEEAKAVHEHVERLLSP-LR----VSTYNGILKMYSECDSMDDAFSVFSNMTE----- 473 (773)
Q Consensus 408 Pd~~----ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~-pd----~~tynaLI~ay~k~G~l~eA~~lf~~M~~----- 473 (773)
|+.. .+..+...+...+++++|...+..+++.... .+ ..+++.|..+|.+.|++++|+..|+++.+
T Consensus 109 ~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 188 (293)
T 3u3w_A 109 PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 2321 2334555566777899999999988884222 22 34688888888899999999888887762
Q ss_pred -C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHcCCC-hHHHHHHHHHHH
Q 004114 474 -R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA----GLKPD-DQIFIGVFSACSALGD-VVEGMLHFESMS 538 (773)
Q Consensus 474 -~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~----Gv~Pd-~~Ty~~LL~a~~~~G~-~deA~~if~~M~ 538 (773)
. ...+|..+...|.+.|++++|+..+++..+. +..+. ..+|..+-.++...|+ .++|...|++..
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 2246777888888888888888888776542 22232 4567777777777784 578877776543
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.11 E-value=3.4e-05 Score=75.54 Aligned_cols=130 Identities=12% Similarity=0.032 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHH
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDM 556 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~ 556 (773)
..+..+...+...|++++|+..|++. +.|+..++..+..++...|++++|...|....+. .+.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 44566777888999999999999876 4678899999999999999999999999998765 23456788899999
Q ss_pred HHhCCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 557 LGSTGYLDEALEFIEKM-PMEP-----------------DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 557 y~r~G~l~eA~~lf~~M-~~~P-----------------d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
|.+.|++++|.+.|++. ...| ...+|..+..++...|+++.|...++...++.|..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999999877 2122 23788889999999999999999999999999875
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.11 E-value=4.3e-05 Score=75.84 Aligned_cols=127 Identities=11% Similarity=0.022 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHH
Q 004114 480 DTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDML 557 (773)
Q Consensus 480 n~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y 557 (773)
..+..+|.+.|++++|+..|++..+. .| +...+..+-.++...|++++|+..|++..+. .| +...+..|-.+|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHH
Confidence 34888999999999999999999885 35 4678888999999999999999999998764 35 467777887777
Q ss_pred HhCCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 558 GSTGY--LDEALEFIEKMPMEPDV--DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 558 ~r~G~--l~eA~~lf~~M~~~Pd~--~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
...|. .++|...+.... .|+. ..|..+-.++...|++++|...++...++.|+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 66554 445666666552 3443 334444556667899999999999999999964
No 107
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.10 E-value=0.00054 Score=71.34 Aligned_cols=202 Identities=11% Similarity=0.003 Sum_probs=138.2
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHH---HHHHHHHHHhCCChHHHHHHHHHhhcC
Q 004114 398 LGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVST---YNGILKMYSECDSMDDAFSVFSNMTER 474 (773)
Q Consensus 398 f~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~t---ynaLI~ay~k~G~l~eA~~lf~~M~~~ 474 (773)
+.++......|+..+...+...+.-.- + .+.......+... +...+..+.+.|++++|..++++..+.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~--~-------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI--I-------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT--H-------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH--H-------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 444444445788777777766654321 1 1122212222332 333467788999999999999987642
Q ss_pred -----C----HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 004114 475 -----D----LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLK-PD----DQIFIGVFSACSALGDVVEGMLHFESMSKD 540 (773)
Q Consensus 475 -----d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~-Pd----~~Ty~~LL~a~~~~G~~deA~~if~~M~~~ 540 (773)
+ ...+..+...+...+++++|+..|++....... ++ ..+++.+..+|...|++++|..+|+++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 123444666777778999999999999874322 23 236888889999999999999999987642
Q ss_pred c----CCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCC-hhHHHHHHHHHH
Q 004114 541 Y----GIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKM-------PMEPD-VDVWEKLMNLCRMHGN-LELGDRCAEIVE 606 (773)
Q Consensus 541 ~----Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M-------~~~Pd-~~ty~~LI~a~~~~G~-~e~A~~~~e~m~ 606 (773)
. +..+. ..+|..+...|.+.|++++|.+.+++. +..+. ..+|..+-.++...|+ .++|...++...
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 11111 347788889999999999999998765 22233 5688888889999995 599988888776
Q ss_pred Hc
Q 004114 607 QL 608 (773)
Q Consensus 607 el 608 (773)
++
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.09 E-value=0.00013 Score=72.61 Aligned_cols=170 Identities=8% Similarity=-0.070 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC----ChHHHHHHH
Q 004114 393 EAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD----SMDDAFSVF 468 (773)
Q Consensus 393 eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G----~l~eA~~lf 468 (773)
+|++.|.+..+.| +...+..|-..+...+++++|...|....+.| +...+..|-.+|.. + +.++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666677766654 56666667777777778888888887777765 45566666666666 5 777777777
Q ss_pred HHhhcC-CHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc----CCChHHHHHHHHHHH
Q 004114 469 SNMTER-DLTSWDTMITGFAK----NGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSA----LGDVVEGMLHFESMS 538 (773)
Q Consensus 469 ~~M~~~-d~~tyn~LI~ay~~----~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~----~G~~deA~~if~~M~ 538 (773)
++..++ +..++..|-..|.. .+++++|+.+|++..+.|... +...+..|-..|.. .++.++|+.+|++..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 776544 55666666666665 667777777777766654210 13455555555555 566777777776654
Q ss_pred HhcCCCCCcchhhhHHHHHHhC-C-----CHHHHHHHHHh
Q 004114 539 KDYGIVPSMKHYVSIVDMLGST-G-----YLDEALEFIEK 572 (773)
Q Consensus 539 ~~~Gi~Pd~~tyn~LI~~y~r~-G-----~l~eA~~lf~~ 572 (773)
+. ..+...+..|-.+|... | ++++|.+.|+.
T Consensus 157 ~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~ 193 (212)
T 3rjv_A 157 SL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNV 193 (212)
T ss_dssp HT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHH
T ss_pred Hc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence 42 22334455555555432 2 56666665554
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.09 E-value=2.2e-05 Score=75.46 Aligned_cols=156 Identities=13% Similarity=0.123 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHhC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKM-YSEC 458 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~a-y~k~ 458 (773)
.+...+.+.|++++|+.+|++..+.. +-+...+..+..++...|++++|...++.+.+.. |+...+..+... +.+.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 35556667777777777777665431 1245566666777777777777777777665542 233322222111 1122
Q ss_pred CChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHH
Q 004114 459 DSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 459 G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
+...+|+..|++..+ | +...|..+...|...|++++|+..|+++.+....+ +...+..+..++...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 223345666665542 3 46667777777777777777777777776643222 2345666666777777777777666
Q ss_pred HHHH
Q 004114 535 ESMS 538 (773)
Q Consensus 535 ~~M~ 538 (773)
.+..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 110
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.08 E-value=0.00042 Score=77.61 Aligned_cols=248 Identities=10% Similarity=0.045 Sum_probs=156.6
Q ss_pred HHHHHHHHHHhcCChhHHHHhhhh----------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004114 352 MASQVLNNCKHEDDFAEASRSSQN----------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACG 421 (773)
Q Consensus 352 ~~n~LI~~y~k~g~~~~A~~v~~~----------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~ 421 (773)
.+..|-.+|...+..+++...+.+ .....|...|...+.++++++....+.+.-...+...+..|-..+.
T Consensus 108 A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~ 187 (452)
T 3e4b_A 108 TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQ 187 (452)
T ss_dssp CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455566666665554433221111 1222355666666655555554333333222223336777777777
Q ss_pred hcC---CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC----CChHHHHHHHHHhhcCCHhHHHHHHHH-H--HHcCC
Q 004114 422 DAK---ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC----DSMDDAFSVFSNMTERDLTSWDTMITG-F--AKNGL 491 (773)
Q Consensus 422 ~~g---~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~----G~l~eA~~lf~~M~~~d~~tyn~LI~a-y--~~~G~ 491 (773)
..| +.++|...|....+.|. ++...+..|-.+|... ++.++|+..|++....+...+..|-.. | ...++
T Consensus 188 ~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 188 KKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCC
T ss_pred HcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Confidence 888 88899999988888874 4555556677777654 688999999988873366677777666 3 45788
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHh----CCC
Q 004114 492 GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALG-----DVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGS----TGY 562 (773)
Q Consensus 492 ~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G-----~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r----~G~ 562 (773)
.++|+.+|++..+.| +...+..|-..|. .| ++++|..+|.+.. .-+...+..|-.+|.. ..+
T Consensus 267 ~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcC
Confidence 999999999988876 4556666655565 44 8899998887664 2355666667766765 348
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcC
Q 004114 563 LDEALEFIEKMPMEPDVDVWEKLMNLCRM----HGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 563 l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~----~G~~e~A~~~~e~m~el~ 609 (773)
.++|.+.|++.--.-+......|-..|.. ..+.++|...+++..+..
T Consensus 338 ~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 338 PQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 89999998876111123334444444442 346777777777666543
No 111
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.07 E-value=0.0002 Score=74.71 Aligned_cols=156 Identities=10% Similarity=-0.024 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCC--HHHHH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDL-----PTFSQLMQACGDAKALEEAKAVHEHVERLLS---PLR--VSTYN 449 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~-----~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~---~pd--~~tyn 449 (773)
..+..+...|++++|++.+.+..+....... ..+..+...+...|++++|...+...++... .+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3567777888888888888777664322111 1222334445566677777777776664321 111 34666
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhc-----CC-----HhHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCC-HHHH
Q 004114 450 GILKMYSECDSMDDAFSVFSNMTE-----RD-----LTSWDTMITGFAKNGLGEDAVDIFSQFKQAG----LKPD-DQIF 514 (773)
Q Consensus 450 aLI~ay~k~G~l~eA~~lf~~M~~-----~d-----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G----v~Pd-~~Ty 514 (773)
.+...|...|++++|+..|++..+ ++ +.+|..+...|...|++++|+..|++..+.. .... ..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666777777777777777765541 11 1456666666666666666666666654321 1111 3455
Q ss_pred HHHHHHHHcCCChHHH-HHHHH
Q 004114 515 IGVFSACSALGDVVEG-MLHFE 535 (773)
Q Consensus 515 ~~LL~a~~~~G~~deA-~~if~ 535 (773)
..+-.++...|+.++| ..+++
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHH
Confidence 5555566666666666 44443
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.07 E-value=9.3e-05 Score=84.91 Aligned_cols=150 Identities=9% Similarity=-0.029 Sum_probs=100.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSV 467 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~l 467 (773)
.|++++|++.|++..+.. .-+...+..+..++...|++++|.+.+++.++.. +-+..++..+..+|.+.|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367778888888776542 2246677778888888888888888888887753 23567788888888888888888888
Q ss_pred HHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHHh
Q 004114 468 FSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL---GDVVEGMLHFESMSKD 540 (773)
Q Consensus 468 f~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~---G~~deA~~if~~M~~~ 540 (773)
|++..+ | +...|..+..+|.+.|++++|++.|++..+..- -+..++..+..++... |+.++|...+++..+.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 887653 3 567788888888888888888888888877531 2456777777888888 8888888888877654
No 113
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.06 E-value=0.00013 Score=70.31 Aligned_cols=95 Identities=13% Similarity=0.021 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC----c
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQA----GLKP--DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS----M 547 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~----Gv~P--d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd----~ 547 (773)
++..+...|...|++++|+..|.+.... +-.| ...++..+-..+...|++++|..++++..+...-..+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444444455555554444443321 1011 0123444444555555555555555543321000011 1
Q ss_pred chhhhHHHHHHhCCCHHHHHHHHHh
Q 004114 548 KHYVSIVDMLGSTGYLDEALEFIEK 572 (773)
Q Consensus 548 ~tyn~LI~~y~r~G~l~eA~~lf~~ 572 (773)
.++..+..++...|++++|.+.+++
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 2234445555555666555555543
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.05 E-value=0.00017 Score=72.29 Aligned_cols=177 Identities=15% Similarity=0.056 Sum_probs=103.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CCH-HHHHHHHHH
Q 004114 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCIS-VD-LPTFSQLMQACGDAKALEEAKAVHEHVERLLSP-LRV-STYNGILKM 454 (773)
Q Consensus 379 ~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~-Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~-pd~-~tynaLI~a 454 (773)
..+...+.+.|++++|+..|+++.+.... |. ...+..+..++.+.|++++|...|+.+++.... +.. ..+-.+..+
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 34667889999999999999999875321 21 356777888999999999999999999987432 221 233334444
Q ss_pred HHh------------------CCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 004114 455 YSE------------------CDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQI 513 (773)
Q Consensus 455 y~k------------------~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~T 513 (773)
|.+ .|+.++|+..|+++.+ | +...+.++... ..+...+. ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l----------~~~~~~~~--------~~ 149 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL----------VFLKDRLA--------KY 149 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH----------HHHHHHHH--------HH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH----------HHHHHHHH--------HH
Confidence 443 6789999999999885 3 22333221110 00000000 01
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 514 FIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 514 y~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
...+...+...|++++|+..|+.+.+.+.-.| ....+..+..+|.+.|+.++|.+.++.+
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 12233444555666666666665554421111 0134455555666666666666655544
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.00 E-value=0.00017 Score=75.11 Aligned_cols=161 Identities=12% Similarity=0.006 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcC---C------HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTER---D------LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL---KPD--DQ 512 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~~---d------~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv---~Pd--~~ 512 (773)
.+...+..+...|++++|.+.+.+..+. . ...+..+...|...|++++|+..|.+...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455677778888888888888765431 1 12234455566777888888888888765321 122 34
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-----cchhhhHHHHHHhCCCHHHHHHHHHhC-------CCCCC-H
Q 004114 513 IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS-----MKHYVSIVDMLGSTGYLDEALEFIEKM-------PMEPD-V 579 (773)
Q Consensus 513 Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-----~~tyn~LI~~y~r~G~l~eA~~lf~~M-------~~~Pd-~ 579 (773)
+|..+-..|...|++++|..+|++..+.....|+ ..++..+..+|.+.|++++|.+.+++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7777888888888888888888877632111222 247777888888888888888888765 11111 5
Q ss_pred HHHHHHHHHHHHcCChhHH-HHHHHHHHH
Q 004114 580 DVWEKLMNLCRMHGNLELG-DRCAEIVEQ 607 (773)
Q Consensus 580 ~ty~~LI~a~~~~G~~e~A-~~~~e~m~e 607 (773)
.+|..+-.++...|+.++| ...++...+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6777788888888888888 666665544
No 116
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.93 E-value=7.9e-05 Score=83.54 Aligned_cols=262 Identities=11% Similarity=-0.004 Sum_probs=132.6
Q ss_pred HHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---hHHHHhhh------hccHHHHHHHHHHcC-----CHHHH
Q 004114 329 RQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDF---AEASRSSQ------NNGTLEQLDGLVKEG-----KVKEA 394 (773)
Q Consensus 329 ~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~---~~A~~v~~------~~~~~~LI~a~~~~G-----~~~eA 394 (773)
+.++.+........+.|. +..+..|-.+|...|+. ++|...+. ......|-..+...+ +.++|
T Consensus 17 g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 344444444444444442 22233444555556666 67766432 111122333344444 67888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC----ChHHHHHH
Q 004114 395 IEVLGLLEKQCISVDLPTFSQLMQACGDAKAL---EEAKAVHEHVERLLSPLRVSTYNGILKMYSECD----SMDDAFSV 467 (773)
Q Consensus 395 l~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~l---e~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G----~l~eA~~l 467 (773)
+..|++..+.|... .+..|-..|...+.. ..+.+.+......|. ......|..+|...+ .+++|..+
T Consensus 94 ~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 94 ESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 88888888876432 344444444443332 234444444444443 234455556666655 34445555
Q ss_pred HHHhhcCCHhHHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC----CChHHHHHHHHHHHHh
Q 004114 468 FSNMTERDLTSWDTMITGFAKNG---LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL----GDVVEGMLHFESMSKD 540 (773)
Q Consensus 468 f~~M~~~d~~tyn~LI~ay~~~G---~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~----G~~deA~~if~~M~~~ 540 (773)
+......+...+..|-..|...| +.++|+..|++..+.|. ++...+..|-..|... ++.++|..+|+...
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-- 244 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-- 244 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--
Confidence 55555555567777777777777 77777777777777653 3344334444444333 57777777777653
Q ss_pred cCCCCCcchhhhHHHH-H--HhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHH
Q 004114 541 YGIVPSMKHYVSIVDM-L--GSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHG-----NLELGDRCAEIVE 606 (773)
Q Consensus 541 ~Gi~Pd~~tyn~LI~~-y--~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G-----~~e~A~~~~e~m~ 606 (773)
+-+...+..|-.+ | ...+++++|.+.|++.--.-+...+..|-..|. .| +.++|...++...
T Consensus 245 ---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 245 ---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp ---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred ---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 2244455555555 3 356777777777776511124555555555555 44 6666666666555
No 117
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.92 E-value=0.00015 Score=69.82 Aligned_cols=154 Identities=12% Similarity=-0.013 Sum_probs=109.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC-CHHHHHHHHHHHHhCC
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL----LSPL-RVSTYNGILKMYSECD 459 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~----G~~p-d~~tynaLI~ay~k~G 459 (773)
+...|++++|.+++..+... ......++..+-..+...|++++|...+.+.++. +..+ ...++..+...|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34678888998855544332 2235567888888888999999999999888773 2222 2457788888999999
Q ss_pred ChHHHHHHHHHhhc-----C-C----HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcC
Q 004114 460 SMDDAFSVFSNMTE-----R-D----LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPD----DQIFIGVFSACSAL 524 (773)
Q Consensus 460 ~l~eA~~lf~~M~~-----~-d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd----~~Ty~~LL~a~~~~ 524 (773)
++++|+..|++..+ + + ..++..+...+...|++++|+..+++.....- ..+ ..++..+..++...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 99999999987653 2 2 34577888899999999999999988764211 112 23457777888899
Q ss_pred CChHHHHHHHHHHHH
Q 004114 525 GDVVEGMLHFESMSK 539 (773)
Q Consensus 525 G~~deA~~if~~M~~ 539 (773)
|++++|..++.+..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999988876643
No 118
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.91 E-value=0.00031 Score=61.24 Aligned_cols=92 Identities=15% Similarity=0.256 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAK 488 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~ 488 (773)
++..+...+...|++++|..++..+++.. +.+..++..+..+|.+.|++++|+.+|+++.+ .+..+|..+...|..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 34444444444555555555554444432 12334444444444444444444444444431 133344444444444
Q ss_pred cCChHHHHHHHHHHHH
Q 004114 489 NGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 489 ~G~~deAl~Lf~eM~~ 504 (773)
.|++++|+.+|+++.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 4444444444444433
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.90 E-value=0.00019 Score=66.63 Aligned_cols=14 Identities=14% Similarity=-0.069 Sum_probs=5.8
Q ss_pred HcCChhHHHHHHHH
Q 004114 591 MHGNLELGDRCAEI 604 (773)
Q Consensus 591 ~~G~~e~A~~~~e~ 604 (773)
..|++++|...++.
T Consensus 129 ~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 129 KQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccc
Confidence 33444444444433
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.88 E-value=0.00051 Score=59.77 Aligned_cols=94 Identities=13% Similarity=0.265 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSAC 521 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~ 521 (773)
..++..+...|.+.|++++|+++|+++.+ .+..+|..+...|...|++++|+.+|+++.... ..+..++..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 34555666666666666666666666542 245566666666666666666666666666542 22445566666666
Q ss_pred HcCCChHHHHHHHHHHHH
Q 004114 522 SALGDVVEGMLHFESMSK 539 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~ 539 (773)
...|++++|..+|+.+.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 666666666666666654
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.85 E-value=0.0014 Score=65.23 Aligned_cols=151 Identities=10% Similarity=-0.024 Sum_probs=120.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAK----ALEEAKAVHEHVERLLSPLRVSTYNGILKMYS 456 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g----~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~ 456 (773)
|-..|...+++++|++.|++..+.| +...+..|-..+.. + +.++|...|....+.| +...+..|-.+|.
T Consensus 24 lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~ 96 (212)
T 3rjv_A 24 LADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLV 96 (212)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 5566777889999999999998876 56677777777776 6 8999999999998876 5677888888888
Q ss_pred h----CCChHHHHHHHHHhhcCC-----HhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004114 457 E----CDSMDDAFSVFSNMTERD-----LTSWDTMITGFAK----NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA 523 (773)
Q Consensus 457 k----~G~l~eA~~lf~~M~~~d-----~~tyn~LI~ay~~----~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~ 523 (773)
. .+++++|+..|++..+.+ ..++..|-..|.. .++.++|+.+|++..+.+ .+...+..|-..|..
T Consensus 97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQ 174 (212)
T ss_dssp CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHH
T ss_pred cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHc
Confidence 7 889999999999988653 6889999999998 889999999999998862 233455556566654
Q ss_pred C-C-----ChHHHHHHHHHHHHh
Q 004114 524 L-G-----DVVEGMLHFESMSKD 540 (773)
Q Consensus 524 ~-G-----~~deA~~if~~M~~~ 540 (773)
. | +.++|..+|+...+.
T Consensus 175 g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 175 GEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp CBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHc
Confidence 3 3 899999999887665
No 122
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.83 E-value=0.0031 Score=67.99 Aligned_cols=235 Identities=11% Similarity=0.096 Sum_probs=161.7
Q ss_pred hccHHHHHHHHHHcCCHH-HHHHHHHHHHHCCCCCCHH-HHHH---HHHHHHhcC-------CHHHHHHHHHHHHHhCCC
Q 004114 375 NNGTLEQLDGLVKEGKVK-EAIEVLGLLEKQCISVDLP-TFSQ---LMQACGDAK-------ALEEAKAVHEHVERLLSP 442 (773)
Q Consensus 375 ~~~~~~LI~a~~~~G~~~-eAl~lf~~M~~~Gv~Pd~~-ty~~---LL~a~~~~g-------~le~A~~l~~~m~k~G~~ 442 (773)
+......+....+.|.+. +|++++++++.. .|+-. +|+. +|..+.... .+++++.+++.++....
T Consensus 29 y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P- 105 (331)
T 3dss_A 29 YQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP- 105 (331)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-
Confidence 344444566667777766 799999999875 45433 3443 333333221 26789999999988753
Q ss_pred CCHHHHHHHHHHHHhCC--ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHH
Q 004114 443 LRVSTYNGILKMYSECD--SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGL-GEDAVDIFSQFKQAGLKPDDQIFIG 516 (773)
Q Consensus 443 pd~~tynaLI~ay~k~G--~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~-~deAl~Lf~eM~~~Gv~Pd~~Ty~~ 516 (773)
-+..+|+--.-++.+.+ .+++++.+++.|.+ ++-.+|+--.-.+...|. ++++++.++++.+..+. |...|+.
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~ 184 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHY 184 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHH
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 37788888777777888 48999999999985 477888888888888888 59999999999987643 5556655
Q ss_pred HHHHHHcC--------------CChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC-----------CCHHHHHHHHH
Q 004114 517 VFSACSAL--------------GDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST-----------GYLDEALEFIE 571 (773)
Q Consensus 517 LL~a~~~~--------------G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~-----------G~l~eA~~lf~ 571 (773)
....+.+. +.++++++++...... -+-|...|+-+--.+.+. +.++++.+.++
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 54444443 4577888888877654 233566676555555555 56889999988
Q ss_pred hC-CCCCCHHHHHHHHH-----HHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 572 KM-PMEPDVDVWEKLMN-----LCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 572 ~M-~~~Pd~~ty~~LI~-----a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
++ .+.||. .|..+-. +....+..+++...+..+.+++|.....|
T Consensus 263 elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 263 ELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHH
Confidence 88 556764 3433222 22235666778888999999999764333
No 123
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.83 E-value=5.3e-05 Score=71.34 Aligned_cols=22 Identities=5% Similarity=-0.062 Sum_probs=8.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 004114 482 MITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 482 LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
|-..|.+.|++++|++.|++..
T Consensus 37 la~~y~~~~~~~~A~~~~~~al 58 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYI 58 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333444444444444444333
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.82 E-value=0.00032 Score=65.01 Aligned_cols=125 Identities=10% Similarity=0.056 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSAC 521 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~ 521 (773)
...+..+...+.+.|++++|...|++..+ .+..+|..+...|...|++++|+..|++..+.. ..+..++..+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34567777888888999999999887653 367788888888888999999999998887753 23466777888888
Q ss_pred HcCCChHHHHHHHHHHHHhcCCCCCcchh--hhHHHHHHhCCCHHHHHHHHHh
Q 004114 522 SALGDVVEGMLHFESMSKDYGIVPSMKHY--VSIVDMLGSTGYLDEALEFIEK 572 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~~~Gi~Pd~~ty--n~LI~~y~r~G~l~eA~~lf~~ 572 (773)
...|++++|..+|++..+.. +.+...+ -.++..+.+.|++++|.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 88899999998888876641 1233333 3344446677888888887765
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.72 E-value=0.00047 Score=61.16 Aligned_cols=92 Identities=10% Similarity=-0.021 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004114 446 STYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS 522 (773)
Q Consensus 446 ~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~ 522 (773)
..+..+...|.+.|++++|+..|++..+ .+..+|..+...|...|++++|+..|++..+.. ..+..++..+..++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 3444444444444555555554444432 133444444444444555555555554444421 112334444444444
Q ss_pred cCCChHHHHHHHHHHH
Q 004114 523 ALGDVVEGMLHFESMS 538 (773)
Q Consensus 523 ~~G~~deA~~if~~M~ 538 (773)
..|++++|..+|++..
T Consensus 96 ~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 96 AMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5555555555544443
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.72 E-value=0.0078 Score=65.33 Aligned_cols=218 Identities=8% Similarity=0.043 Sum_probs=158.1
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC-C-ChHHH
Q 004114 389 GKVKEAIEVLGLLEKQCISV-DLPTFSQLMQACGDAK-ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC-D-SMDDA 464 (773)
Q Consensus 389 G~~~eAl~lf~~M~~~Gv~P-d~~ty~~LL~a~~~~g-~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~-G-~l~eA 464 (773)
+..++|++++++++.. .| +..+|+.--.++...+ .+++++.+++.++....+ +..+|+----.+.+. + +.+++
T Consensus 68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 4456899999999886 34 4456676666666777 599999999999987543 677888877777766 6 88999
Q ss_pred HHHHHHhhcC---CHhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-------
Q 004114 465 FSVFSNMTER---DLTSWDTMITGFAKNGLGE--------DAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD------- 526 (773)
Q Consensus 465 ~~lf~~M~~~---d~~tyn~LI~ay~~~G~~d--------eAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~------- 526 (773)
+++++.+.+. +..+|+--.-.+.+.|.++ ++++.+++|.+.... |...|+..-..+.+.+.
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHH
Confidence 9999999864 6677777666666666666 999999999987543 66778777777777775
Q ss_pred hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCH--------------------HHHHHHHHhC-CC-------CCC
Q 004114 527 VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYL--------------------DEALEFIEKM-PM-------EPD 578 (773)
Q Consensus 527 ~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l--------------------~eA~~lf~~M-~~-------~Pd 578 (773)
++++++++.++... -+-|...|+-+--.+.+.|+- .+..++..++ .. .+.
T Consensus 224 ~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 224 LQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 67888888877664 233667777776677766653 4455555555 21 257
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHH-HcCCCC
Q 004114 579 VDVWEKLMNLCRMHGNLELGDRCAEIVE-QLDPSR 612 (773)
Q Consensus 579 ~~ty~~LI~a~~~~G~~e~A~~~~e~m~-el~p~~ 612 (773)
...+..|+..|...|+.++|.++++.+. +.+|-.
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence 8889999999999999999999999885 667644
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.71 E-value=0.00064 Score=59.65 Aligned_cols=113 Identities=18% Similarity=0.048 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDML 557 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y 557 (773)
.|..+...+...|++++|+..|++..... ..+...+..+..++...|++++|..++....+. .+.+...+..+..+|
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence 34444444444555555555554444321 113334444444445555555555555444332 112233444444455
Q ss_pred HhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 004114 558 GSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHG 593 (773)
Q Consensus 558 ~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G 593 (773)
.+.|++++|.+.|++. ...| +...+..+..++...|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 5555555555555443 1122 3344444444444443
No 128
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.71 E-value=0.0001 Score=69.38 Aligned_cols=83 Identities=11% Similarity=0.043 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSA 523 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~ 523 (773)
+-.|-.+|.+.|++++|++.|++..+ | +..+|..+..+|...|++++|+..|++..+. .|+ ..++..+...+.+
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 33445555555555555555555442 2 4455555555555555555555555555542 232 3445555555555
Q ss_pred CCChHHHHH
Q 004114 524 LGDVVEGML 532 (773)
Q Consensus 524 ~G~~deA~~ 532 (773)
.|+.++|.+
T Consensus 112 ~~~~~~aa~ 120 (150)
T 4ga2_A 112 NDVTDGRAK 120 (150)
T ss_dssp HCSSSSHHH
T ss_pred cCChHHHHH
Confidence 555554443
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.70 E-value=0.0013 Score=57.73 Aligned_cols=109 Identities=13% Similarity=0.031 Sum_probs=56.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+...+...|++++|+..|.+..... ..+...+..+..++...|++++|...+...++.. +.+..++..+..+|.+.|+
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCC
Confidence 4455555666666666666655432 2244455555555556666666666666555542 2234455555555555555
Q ss_pred hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCC
Q 004114 461 MDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGL 491 (773)
Q Consensus 461 l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~ 491 (773)
+++|+..|++..+ | +...+..+..++.+.|+
T Consensus 96 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 96 HVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 5555555554432 2 34444444444444443
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.69 E-value=0.00028 Score=67.17 Aligned_cols=119 Identities=6% Similarity=0.056 Sum_probs=83.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHhCCCh--
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKM-YSECDSM-- 461 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~a-y~k~G~l-- 461 (773)
+...|++++|+..|.+..+.. +.+...+..+..++...|++++|...+..+++.. +.+...+..+..+ |.+.|+.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345677777888887776653 2356677777788888888888888888877764 2356667777777 6677887
Q ss_pred HHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 462 DDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 462 ~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
++|+.+|+++.+ | +...|..+...|...|++++|+..|++..+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888877663 3 5667777777888888888888888887764
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.66 E-value=0.00054 Score=65.12 Aligned_cols=89 Identities=13% Similarity=0.045 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCC
Q 004114 415 QLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGL 491 (773)
Q Consensus 415 ~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~ 491 (773)
.+-.++.+.|++++|...|+.+++.. +-+...|..|-.+|.+.|++++|+..|++..+ | +...|..+-.+|...|+
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA 119 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 33334444455555555555444432 12344455555555555555555555554431 2 34455555555555555
Q ss_pred hHHHHHHHHHHHH
Q 004114 492 GEDAVDIFSQFKQ 504 (773)
Q Consensus 492 ~deAl~Lf~eM~~ 504 (773)
+++|+..|++..+
T Consensus 120 ~~eA~~~~~~al~ 132 (151)
T 3gyz_A 120 PLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 132
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.0011 Score=72.18 Aligned_cols=193 Identities=14% Similarity=0.051 Sum_probs=136.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD----------------LPTFSQLMQACGDAKALEEAKAVHEHVERL-LSPL 443 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd----------------~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-G~~p 443 (773)
-...+.+.|++++|+++|.++.+..-... ...+..|...|...|++++|.+++..+.+. +-..
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34567788999999999999887532111 124677889999999999999999887764 1112
Q ss_pred CH----HHHHHHHHHHHhCCChHHHHHHHHHhhc-----C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC-
Q 004114 444 RV----STYNGILKMYSECDSMDDAFSVFSNMTE-----R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA--GL- 507 (773)
Q Consensus 444 d~----~tynaLI~ay~k~G~l~eA~~lf~~M~~-----~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~--Gv- 507 (773)
+. .+.+.+-..+...|+.+.|..++..... . -..++..|...|...|++++|+.++++.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 1233333344456889999999887652 1 1346788899999999999999999988653 21
Q ss_pred -CCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhc---CCCCC--cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 508 -KPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDY---GIVPS--MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 508 -~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~---Gi~Pd--~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+|. ..++..++..|...|++++|..++.+..... ..++. ...+..+...+...|++++|...|.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 222 3478888899999999999999988765321 11111 345667777788899999998777654
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.64 E-value=0.00069 Score=64.38 Aligned_cols=118 Identities=5% Similarity=0.040 Sum_probs=83.2
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHH-HHHcCCh--HH
Q 004114 421 GDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITG-FAKNGLG--ED 494 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~a-y~~~G~~--de 494 (773)
...|++++|...+...++.. +.+..++..+..+|...|++++|+..|++..+ .+...|..+..+ |...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34567778888888777764 34667788888888888888888888887663 366677777777 6678887 88
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 004114 495 AVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKD 540 (773)
Q Consensus 495 Al~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~ 540 (773)
|+..|++..+... -+...+..+..++...|++++|..+|..+.+.
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888877531 23556677777788888888888888777553
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.63 E-value=0.0004 Score=73.23 Aligned_cols=122 Identities=11% Similarity=0.002 Sum_probs=60.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHH
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD----QIFIGVFSAC 521 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~----~Ty~~LL~a~ 521 (773)
+-.+..++...|++++|.++|+.+.. |+-...-.+...+.+.+++++|+..|++.... |+. ..+..+-.++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHHHH
Confidence 34455556666666666666666642 32224444444566666666666666533221 211 2444455555
Q ss_pred HcCCChHHHHHHHHHHHHhcCCCCC--cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 522 SALGDVVEGMLHFESMSKDYGIVPS--MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~~~Gi~Pd--~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
...|+.++|+..|++.... ...|. ......+-.++.+.|+.++|..+|+++
T Consensus 182 ~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666666666666555321 11132 123333444455555555555555554
No 135
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.62 E-value=0.00045 Score=63.07 Aligned_cols=101 Identities=15% Similarity=0.048 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004114 513 IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCR 590 (773)
Q Consensus 513 Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~ 590 (773)
.+..+-..+.+.|++++|+..|.+..+. -+-+...|..+..+|.+.|++++|.+.|++. .+.| +...|..+-.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555556666777777777777766553 2234566777777777777777777777765 3333 4677888888888
Q ss_pred HcCChhHHHHHHHHHHHcCCCCchH
Q 004114 591 MHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 591 ~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
..|++++|...++...+++|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 8888888888888888888888544
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.61 E-value=0.002 Score=61.21 Aligned_cols=99 Identities=9% Similarity=0.011 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSA 520 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a 520 (773)
...+..+-..|.+.|++++|+..|++..+ | +...|..+-.+|...|++++|+..|++..+.. |+ ...|..+-.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHH
Confidence 44677788889999999999999998873 4 78899999999999999999999999998853 43 5678888899
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCCCcc
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVPSMK 548 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~Pd~~ 548 (773)
+...|++++|...|+...+. .|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l---~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH---SNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCHH
Confidence 99999999999999988764 35543
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.60 E-value=0.00066 Score=71.61 Aligned_cols=185 Identities=12% Similarity=-0.017 Sum_probs=131.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCHHHHHHH-------HHHHHhCCChHHHHHHHHHhhc--C-------C----------
Q 004114 422 DAKALEEAKAVHEHVERLLSPLRVSTYNGI-------LKMYSECDSMDDAFSVFSNMTE--R-------D---------- 475 (773)
Q Consensus 422 ~~g~le~A~~l~~~m~k~G~~pd~~tynaL-------I~ay~k~G~l~eA~~lf~~M~~--~-------d---------- 475 (773)
..++...|.+.|.++.+.... ....|..+ ...+.+.++..+++..+..-.+ | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 467788888888888776422 34566655 3445555555555555544332 1 1
Q ss_pred -----HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC--cc
Q 004114 476 -----LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS--MK 548 (773)
Q Consensus 476 -----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd--~~ 548 (773)
...+-.+...+...|++++|.++|..+...+ |+....-.+-..+.+.+++++|+..|....+. . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 1234557788899999999999999887643 66555555556788999999999999755321 1 111 23
Q ss_pred hhhhHHHHHHhCCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 549 HYVSIVDMLGSTGYLDEALEFIEKM---PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 549 tyn~LI~~y~r~G~l~eA~~lf~~M---~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
.+..|-.++.+.|++++|++.|++. +..|. ...+..+-.++.+.|+.++|..+++.+...+|.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 6677888999999999999999987 22254 346667777889999999999999999999997
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.56 E-value=0.0013 Score=58.12 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=52.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+...+.+.|++++|+.+|++..+.. ..+..++..+..++...|++++|...++.+++.. +.+..++..+..+|.+.|+
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhh
Confidence 4555566666666666666665542 2245555566666666666666666666666543 2245555556666666666
Q ss_pred hHHHHHHHHHhh
Q 004114 461 MDDAFSVFSNMT 472 (773)
Q Consensus 461 l~eA~~lf~~M~ 472 (773)
+++|+..|++..
T Consensus 100 ~~~A~~~~~~~~ 111 (133)
T 2lni_A 100 YTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.54 E-value=0.00074 Score=65.74 Aligned_cols=116 Identities=10% Similarity=-0.024 Sum_probs=50.2
Q ss_pred HHHHHHHhcCChhHHHHhhhhc---------cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC--------------H
Q 004114 355 QVLNNCKHEDDFAEASRSSQNN---------GTLEQLDGLVKEGKVKEAIEVLGLLEKQCIS-VD--------------L 410 (773)
Q Consensus 355 ~LI~~y~k~g~~~~A~~v~~~~---------~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~-Pd--------------~ 410 (773)
..+......|++++|.+++... .+..+-..+.+.|++++|+.+|.+..+..-. |+ .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 4444555556666666643211 1112555667778888888888777764211 10 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004114 411 PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNM 471 (773)
Q Consensus 411 ~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M 471 (773)
.+|..+..++...|++++|...+...++.. +.+..++..+..+|.+.|++++|+..|++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 344444444444455555555554444432 123344444444444444444444444443
No 140
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.52 E-value=0.0019 Score=58.83 Aligned_cols=90 Identities=7% Similarity=-0.060 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcC
Q 004114 414 SQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNG 490 (773)
Q Consensus 414 ~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G 490 (773)
..+-..+.+.|++++|.+.|++.++.. +.+..+|..+..+|.+.|++++|+..|++..+ .+...|..+..+|...|
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 333444445555555555555554442 22344455555555555555555555554432 23444555555555555
Q ss_pred ChHHHHHHHHHHHH
Q 004114 491 LGEDAVDIFSQFKQ 504 (773)
Q Consensus 491 ~~deAl~Lf~eM~~ 504 (773)
++++|++.|++.++
T Consensus 96 ~~~~A~~~~~~al~ 109 (126)
T 4gco_A 96 EWSKAQRAYEDALQ 109 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555444
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.51 E-value=0.002 Score=69.10 Aligned_cols=124 Identities=8% Similarity=-0.050 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--------------HHHHHHHHHHHHhCCChHHHHHHHHHhhc---C
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLR--------------VSTYNGILKMYSECDSMDDAFSVFSNMTE---R 474 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd--------------~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~ 474 (773)
.+..+-.++.+.|++++|...|...++...... ..+|..+..+|.+.|++++|+..|++..+ .
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 444555555566666666666666655432211 35666666666666666666666666552 2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHH-HHHHHHH
Q 004114 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEG-MLHFESM 537 (773)
Q Consensus 475 d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA-~~if~~M 537 (773)
+...|..+..+|...|++++|+..|++.++. .| +..++..+..++...|+.++| ..+|..|
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666777776666666653 23 344555555566666666665 3344444
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.47 E-value=0.0051 Score=63.93 Aligned_cols=189 Identities=11% Similarity=0.006 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHH
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITG 485 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~a 485 (773)
+...+..+...+...|++++|...+...++.. +-+...|..+..+|.+.|++++|+..|++..+ | +...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44566677777888888888888888888763 23677888888888899999999999988764 2 66788888889
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHH
Q 004114 486 FAKNGLGEDAVDIFSQFKQAGLKPDD-QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564 (773)
Q Consensus 486 y~~~G~~deAl~Lf~eM~~~Gv~Pd~-~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~ 564 (773)
|...|++++|+..|.+..+.. |+. .++..++.... ...++.. +..+... -...+......+-. + ..|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~-~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSAL---RIAKKKR-WNSIEER-RIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHH---HHHHHHH-HHHHHHT-CCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHH---HHHHHHH-HHHHHHH-HHhhhHHHHHHHHH-H-HHHHHH
Confidence 999999999999998876632 211 00111111111 1111111 1222222 34444444443433 2 268888
Q ss_pred HHHHHHHhC-CCCCCHHH-HHHHHHHHHHc-CChhHHHHHHHHHHH
Q 004114 565 EALEFIEKM-PMEPDVDV-WEKLMNLCRMH-GNLELGDRCAEIVEQ 607 (773)
Q Consensus 565 eA~~lf~~M-~~~Pd~~t-y~~LI~a~~~~-G~~e~A~~~~e~m~e 607 (773)
+|.+.++.. ...|+... ...+-..+... +.+++|.++++.+.+
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 898888766 55676443 33333333333 445566666655543
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.47 E-value=0.0021 Score=68.85 Aligned_cols=123 Identities=11% Similarity=-0.007 Sum_probs=100.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD--------------LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVS 446 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd--------------~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~ 446 (773)
+-..|.+.|++++|+..|.+..+..-... ..+|..+..++.+.|++++|+..++..++.. +.+..
T Consensus 153 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 231 (336)
T 1p5q_A 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEK 231 (336)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 55566777888888888888776532211 5788899999999999999999999999975 34788
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHH-HHHHHHHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDA-VDIFSQFKQ 504 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deA-l~Lf~eM~~ 504 (773)
++..+..+|.+.|++++|+..|++..+ | +...|..+..++.+.|+.++| ..+|..|..
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998873 3 678899999999999999988 557777653
No 144
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.46 E-value=0.0016 Score=57.18 Aligned_cols=93 Identities=12% Similarity=0.140 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---C-------HhHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---D-------LTSWDT 481 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d-------~~tyn~ 481 (773)
.+..+...+...|++++|...+...++.. +.+..++..+..+|.+.|++++|+..|+++.+. + ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34445555556666666666666665543 234555666666666666666666666655421 1 455666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 004114 482 MITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 482 LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
+..+|...|++++|++.|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 666677777777777777766663
No 145
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.45 E-value=0.00098 Score=60.52 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhc-----CC----HhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTE-----RD----LTSWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~-----~d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
+..+...|...|++++|+..|++..+ .+ ..++..+...|...|++++|+..|++..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444445555555555444331 11 1244445555555555555555555443
No 146
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.44 E-value=0.0053 Score=72.53 Aligned_cols=188 Identities=9% Similarity=-0.017 Sum_probs=124.0
Q ss_pred HHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---------CCC-------
Q 004114 382 LDGLVKEGKVKEAI-EVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS---------PLR------- 444 (773)
Q Consensus 382 I~a~~~~G~~~eAl-~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~---------~pd------- 444 (773)
+.-+.+.|+.++|. ++|++.... ++.+...|-..+...-+.|+++.|+++|+.+++... .|+
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence 33444567777776 778777653 334555566667777778888888888888776410 131
Q ss_pred -----HHHHHHHHHHHHhCCChHHHHHHHHHhhcC-C---HhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCCHHHH
Q 004114 445 -----VSTYNGILKMYSECDSMDDAFSVFSNMTER-D---LTSWDTMITGFAKN-GLGEDAVDIFSQFKQAGLKPDDQIF 514 (773)
Q Consensus 445 -----~~tynaLI~ay~k~G~l~eA~~lf~~M~~~-d---~~tyn~LI~ay~~~-G~~deAl~Lf~eM~~~Gv~Pd~~Ty 514 (773)
..+|...++...+.|.++.|+++|.+..+. . ...|-..+..-.+. ++.+.|..+|+..++. +.-+...+
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w 507 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHH
Confidence 346788888888888888888888877543 2 22232222122223 4578888888888775 32244445
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhcCCCC---CcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 515 IGVFSACSALGDVVEGMLHFESMSKDYGIVP---SMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 515 ~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P---d~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
...+.-....|+.+.|+.+|+..... .++ ....|...++.-.+.|..+.+.++.++|
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~--~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDK--ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTT--SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56666666778888888888877553 221 2457777888888888888888888888
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.43 E-value=0.0012 Score=61.95 Aligned_cols=89 Identities=11% Similarity=0.039 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL 524 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~ 524 (773)
+..+...+.+.|++++|+..|++..+ | +...|..+-.+|...|++++|+..|++.....- -+..++..+-.++...
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 33344444444444444444444331 1 334444444444444444444444444443210 1223333344444444
Q ss_pred CChHHHHHHHHHH
Q 004114 525 GDVVEGMLHFESM 537 (773)
Q Consensus 525 G~~deA~~if~~M 537 (773)
|++++|...|+..
T Consensus 103 g~~~~A~~~~~~a 115 (148)
T 2vgx_A 103 GELAEAESGLFLA 115 (148)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.43 E-value=0.0009 Score=57.63 Aligned_cols=94 Identities=14% Similarity=0.003 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHH
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDM 556 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~ 556 (773)
..|..+...+...|++++|+.+|++..... ..+...+..+..++...|++++|..+++...+. .+.+...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 445556666666666666666666665532 113445555555555666666666666555443 11233444445555
Q ss_pred HHhCCCHHHHHHHHHhC
Q 004114 557 LGSTGYLDEALEFIEKM 573 (773)
Q Consensus 557 y~r~G~l~eA~~lf~~M 573 (773)
|...|++++|.+.+++.
T Consensus 82 ~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 55555555555555443
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0032 Score=56.11 Aligned_cols=91 Identities=9% Similarity=-0.030 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHc
Q 004114 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKN 489 (773)
Q Consensus 413 y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~ 489 (773)
+..+-..+.+.|++++|...|...++.. +.+..+|..+..+|.+.|++++|+..|++..+ | +...|..+..+|...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444444555566666666665555543 22455555566666666666666666655542 2 445555566666666
Q ss_pred CChHHHHHHHHHHHH
Q 004114 490 GLGEDAVDIFSQFKQ 504 (773)
Q Consensus 490 G~~deAl~Lf~eM~~ 504 (773)
|++++|+..|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 666666666665554
No 150
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0041 Score=67.49 Aligned_cols=190 Identities=7% Similarity=-0.087 Sum_probs=137.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCC----------------HHHHHHHHHHHHhCCChHHHHHHHHHhhcC-----CH
Q 004114 418 QACGDAKALEEAKAVHEHVERLLSPLR----------------VSTYNGILKMYSECDSMDDAFSVFSNMTER-----DL 476 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~G~~pd----------------~~tynaLI~ay~k~G~l~eA~~lf~~M~~~-----d~ 476 (773)
..+.+.|++++|.+.+..+++...... ...+..|...|.+.|++++|.+++..+.+. +.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 446788999999999999988632211 124678899999999999999999887631 11
Q ss_pred ----hHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-
Q 004114 477 ----TSWDTMITGFAKNGLGEDAVDIFSQFKQ----AGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS- 546 (773)
Q Consensus 477 ----~tyn~LI~ay~~~G~~deAl~Lf~eM~~----~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd- 546 (773)
.+.+.+-..+...|..++|+.++.+... .+..+. ..++..|...+...|++++|..++........-..+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2233333444557889999999988754 344444 456788889999999999999999887654222222
Q ss_pred ---cchhhhHHHHHHhCCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 547 ---MKHYVSIVDMLGSTGYLDEALEFIEKM-------PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 547 ---~~tyn~LI~~y~r~G~l~eA~~lf~~M-------~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
+.+|..++.+|...|++++|..++++. +..+. ..++..+...+...++++.|...+....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 467888999999999999999998765 21111 34566666777888999999776665543
No 151
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.40 E-value=0.0008 Score=59.15 Aligned_cols=58 Identities=9% Similarity=0.081 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
.+..+...|...|++++|+..|++..+ .+...|..+...|...|++++|+..|++...
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 344444455555555555555554432 1344444445555555555555555554443
No 152
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.39 E-value=0.0006 Score=61.97 Aligned_cols=132 Identities=14% Similarity=-0.009 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC----c
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPD----DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS----M 547 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd----~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd----~ 547 (773)
.++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..+++...+...-..+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4677888899999999999999998875321 122 136778888899999999999999886543211112 4
Q ss_pred chhhhHHHHHHhCCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 548 KHYVSIVDMLGSTGYLDEALEFIEKM-------PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 548 ~tyn~LI~~y~r~G~l~eA~~lf~~M-------~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
..+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...++...++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56777888999999999999998765 1111 1456777888899999999999998887765
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.35 E-value=0.00071 Score=57.84 Aligned_cols=93 Identities=14% Similarity=0.054 Sum_probs=44.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHc
Q 004114 517 VFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP---DVDVWEKLMNLCRMH 592 (773)
Q Consensus 517 LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P---d~~ty~~LI~a~~~~ 592 (773)
+...+...|++++|..+|++..+. .+.+...+..+..+|.+.|++++|.+.|++. ...| +..+|..+..++...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 333344444444444444444332 1122334444444455555555555555443 1122 345555555555556
Q ss_pred -CChhHHHHHHHHHHHcCCC
Q 004114 593 -GNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 593 -G~~e~A~~~~e~m~el~p~ 611 (773)
|++++|...++.+.+..|.
T Consensus 90 ~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 90 EGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp SSCSHHHHHHHHHHGGGCCC
T ss_pred hCCHHHHHHHHHHHhhcccC
Confidence 6666666666555555554
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.35 E-value=0.00084 Score=63.24 Aligned_cols=102 Identities=10% Similarity=-0.015 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004114 513 IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCR 590 (773)
Q Consensus 513 Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~ 590 (773)
.+..+-..+...|++++|+.+|.+..+. .+-+...|..+..+|.+.|++++|.+.|++. .+.| +...|..+-.++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444444444555555555555544332 1113444555555555555555555555544 2223 3556666666666
Q ss_pred HcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 591 MHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 591 ~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
..|++++|...++...+++|++...+
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHH
Confidence 66777777777766666666665433
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.34 E-value=0.0045 Score=55.49 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHH
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITG 485 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~a 485 (773)
+...+..+...+...|++++|...+...++.. +.+..++..+..+|.+.|++++|+..|++..+ | +...|..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34444455555555555555555555555442 12344455555555555555555555554432 1 34445555555
Q ss_pred HHHcCChHHHHHHHHHHH
Q 004114 486 FAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 486 y~~~G~~deAl~Lf~eM~ 503 (773)
|...|++++|+..|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555555444
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.33 E-value=0.0048 Score=52.92 Aligned_cols=94 Identities=15% Similarity=0.073 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSAC 521 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~ 521 (773)
...+..+...+...|++++|+..|++..+ | +...|..+...|...|++++|+..+++..+.. ..+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34566677777777777887777777652 2 56677777777777777778777777776642 12455666777777
Q ss_pred HcCCChHHHHHHHHHHHH
Q 004114 522 SALGDVVEGMLHFESMSK 539 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~ 539 (773)
...|++++|..++....+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777776643
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.32 E-value=0.00048 Score=67.13 Aligned_cols=143 Identities=12% Similarity=0.027 Sum_probs=72.9
Q ss_pred HHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC--------------HHH
Q 004114 452 LKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPD--------------DQI 513 (773)
Q Consensus 452 I~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd--------------~~T 513 (773)
+.+....|++++|.++|+...+ .....|..+...+...|++++|+.+|++.....- .|+ ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 3344445555556555543322 1344566666777777777777777777766321 111 145
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 004114 514 FIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRM 591 (773)
Q Consensus 514 y~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~ 591 (773)
+..+..+|...|++++|+..+....+. -+.+...+..+..+|...|++++|.+.|++. .+.| +..++..+..++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 555566666666666666666665543 1223455555666666666666666666554 2223 34445444444444
Q ss_pred cCChh
Q 004114 592 HGNLE 596 (773)
Q Consensus 592 ~G~~e 596 (773)
.++.+
T Consensus 169 ~~~~~ 173 (198)
T 2fbn_A 169 LKEAR 173 (198)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 158
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.32 E-value=0.0011 Score=62.15 Aligned_cols=93 Identities=12% Similarity=-0.044 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHH
Q 004114 411 PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFA 487 (773)
Q Consensus 411 ~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~ 487 (773)
..+..+...+...|++++|...|...++.. +.+...|..+-.+|.+.|++++|+..|++..+ | +...|..+..+|.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 345555566667777777777777776653 23566666677777777777777777776652 3 5566666777777
Q ss_pred HcCChHHHHHHHHHHHH
Q 004114 488 KNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 488 ~~G~~deAl~Lf~eM~~ 504 (773)
..|++++|+..|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776655
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.32 E-value=0.00094 Score=61.56 Aligned_cols=92 Identities=15% Similarity=0.068 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDML 557 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y 557 (773)
.+..+...+.+.|++++|+.+|++...... -+...|..+-.++...|++++|...|+...+. -+-+...+..+..+|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 344444555555555555555555544321 13334444444555555555555555554432 111233344444444
Q ss_pred HhCCCHHHHHHHHHh
Q 004114 558 GSTGYLDEALEFIEK 572 (773)
Q Consensus 558 ~r~G~l~eA~~lf~~ 572 (773)
...|++++|.+.|+.
T Consensus 97 ~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 97 LQLGDLDGAESGFYS 111 (142)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 444444444444443
No 160
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.31 E-value=0.002 Score=72.84 Aligned_cols=115 Identities=12% Similarity=0.020 Sum_probs=59.0
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHH
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAV 496 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl 496 (773)
+.+.|++++|.+.+++.++.. +-+..++..+..+|.+.|++++|++.|++..+ .+..+|..+..+|...|++++|+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 445566666666666666652 22455666666666666666666666665543 24455666666666666666666
Q ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 004114 497 DIFSQFKQAGL-KPDDQIFIGVFSACSALGDVVEGMLHFE 535 (773)
Q Consensus 497 ~Lf~eM~~~Gv-~Pd~~Ty~~LL~a~~~~G~~deA~~if~ 535 (773)
+.|++..+..- .++.......+..+.+.|++++|+++++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666555321 1112222222222445555555555544
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.30 E-value=0.0031 Score=59.29 Aligned_cols=92 Identities=11% Similarity=0.000 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAK 488 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~ 488 (773)
.+..+...+...|++++|...|...++.. +-+...|..+..+|.+.|++++|+..|++..+ | +...|..+..+|..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444444445555555555555554432 11344444444455555555555555544432 1 34444444444444
Q ss_pred cCChHHHHHHHHHHHH
Q 004114 489 NGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 489 ~G~~deAl~Lf~eM~~ 504 (773)
.|++++|+..|++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4555555444444443
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.25 E-value=0.0021 Score=54.78 Aligned_cols=90 Identities=11% Similarity=0.087 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHcC
Q 004114 449 NGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLK-PDDQIFIGVFSACSAL 524 (773)
Q Consensus 449 naLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~-Pd~~Ty~~LL~a~~~~ 524 (773)
..+...|.+.|++++|+..|++..+ .+...|..+...|...|++++|+..|++..+.... .+...+..+..++...
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 3344444444444444444444331 13344444555555555555555555555443110 0234444445555555
Q ss_pred -CChHHHHHHHHHHH
Q 004114 525 -GDVVEGMLHFESMS 538 (773)
Q Consensus 525 -G~~deA~~if~~M~ 538 (773)
|++++|.+++..+.
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 90 EGKEVEAEIAEARAK 104 (112)
T ss_dssp SSCSHHHHHHHHHHG
T ss_pred hCCHHHHHHHHHHHh
Confidence 55555555555443
No 163
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.25 E-value=0.0013 Score=68.43 Aligned_cols=162 Identities=6% Similarity=-0.100 Sum_probs=112.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 004114 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFS 519 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~ 519 (773)
+...+..+...|.+.|++++|+..|++..+ | +...|..+..+|.+.|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 456778888999999999999999998763 4 7889999999999999999999999998874 44 4567888889
Q ss_pred HHHcCCChHHHHHHHHHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 004114 520 ACSALGDVVEGMLHFESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 520 a~~~~G~~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A 598 (773)
++...|++++|...|....+. .|+ ..++..++....+......... ........+..+...+ ..+. .|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 999999999999999887553 121 2233333333332222222222 2223333344444333 3333 5778888
Q ss_pred HHHHHHHHHcCCCCc
Q 004114 599 DRCAEIVEQLDPSRL 613 (773)
Q Consensus 599 ~~~~e~m~el~p~~~ 613 (773)
.+.++...+++|.+.
T Consensus 155 ~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 155 LEECQRNHEGHEDDG 169 (281)
T ss_dssp HTTTSGGGTTTSCHH
T ss_pred HHHHHhhhccccchh
Confidence 877777777777653
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.24 E-value=0.008 Score=54.16 Aligned_cols=93 Identities=13% Similarity=-0.028 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHH
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR----VSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTM 482 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd----~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~L 482 (773)
...+..+...+...|++++|..+++..++. .|+ ..++..+..+|.+.|++++|+..|++..+ | +...|..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344444555555555555555555555443 233 34445555555555555555555554432 1 34445555
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~ 504 (773)
..+|...|++++|+..|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 165
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.22 E-value=0.02 Score=64.92 Aligned_cols=201 Identities=11% Similarity=0.013 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHH-HHHHH
Q 004114 392 KEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAF-SVFSN 470 (773)
Q Consensus 392 ~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~-~lf~~ 470 (773)
+.+..+|++++.. ++-+...|...+.-+.+.|+++.|+.+++..++. +.+...+. +|+...+.++.. .+.+.
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHH
Confidence 4567788888875 3445777888888888899999999999999998 44443333 233322222221 11111
Q ss_pred hh------------cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHcCCChHHHHHHHHH
Q 004114 471 MT------------ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFI--GVFSACSALGDVVEGMLHFES 536 (773)
Q Consensus 471 M~------------~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~--~LL~a~~~~G~~deA~~if~~ 536 (773)
.. ......|-..+..+.+.+..+.|..+|++. ... ..+...|. +.+.... .++.+.|..+|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~ 345 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSS 345 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHH
Confidence 10 012356777788877888899999999998 321 12344443 3333322 3369999999999
Q ss_pred HHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004114 537 MSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 537 M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~ 606 (773)
..+.++- +...+...++...+.|+.+.|..+|+.+. .....|...+..=..+|+.+.+..+++...
T Consensus 346 al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 346 GLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8887432 23456667888889999999999999983 368889999988888999998888777665
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.22 E-value=0.0061 Score=54.61 Aligned_cols=94 Identities=5% Similarity=-0.084 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSA 520 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a 520 (773)
+...+..+...|.+.|++++|+..|++..+ | +...|..+..+|...|++++|+..|++..+... -+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHH
Confidence 455566666666666666666666665542 2 455666666666666666666666666655321 134455556666
Q ss_pred HHcCCChHHHHHHHHHHH
Q 004114 521 CSALGDVVEGMLHFESMS 538 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~ 538 (773)
+...|++++|...|....
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 666666666666665544
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.20 E-value=0.0064 Score=55.18 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-C-------HhHHHHH
Q 004114 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-D-------LTSWDTM 482 (773)
Q Consensus 413 y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d-------~~tyn~L 482 (773)
+..|-.++.+.|++++|+..|.+.++.. +-+..+|..+-.+|.+.|++++|+..|++..+ | + ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344445555555555555555555542 22345555555566666666666665555432 1 0 1244555
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~ 504 (773)
-.+|...|++++|++.|++.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666666666666666554
No 168
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.20 E-value=0.0045 Score=56.86 Aligned_cols=86 Identities=10% Similarity=-0.056 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChH
Q 004114 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGE 493 (773)
Q Consensus 417 L~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~d 493 (773)
...+...|++++|..+|..+++.. +.+...|..+..+|.+.|++++|+..|++..+ | +...|..+..+|...|+++
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 333444455555555555444432 12344444444444455555555555544431 1 3334444444444555555
Q ss_pred HHHHHHHHHH
Q 004114 494 DAVDIFSQFK 503 (773)
Q Consensus 494 eAl~Lf~eM~ 503 (773)
+|+..|++..
T Consensus 104 ~A~~~~~~al 113 (142)
T 2xcb_A 104 GAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.20 E-value=0.0084 Score=54.01 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhc--CC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004114 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTE--RD----LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGV 517 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~L 517 (773)
+...+..+...+.+.|++++|+..|++..+ |+ ...|..+..+|...|++++|+..|++..+.. ..+...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 455566666666667777777777766553 33 4556666666666666666666666665532 1134455555
Q ss_pred HHHHHcCCChHHHHHHHHHHHH
Q 004114 518 FSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~ 539 (773)
..++...|++++|..+|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666666665544
No 170
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0059 Score=54.36 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACS 522 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~ 522 (773)
.+..+-..+.+.|++++|+..|++..+ | +...|..+..+|.+.|++++|+..|++..+.. | +..+|..+-.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 344444455555555555555554432 1 34455555555555555555555555554432 2 2334444444455
Q ss_pred cCCChHHHHHHHHHH
Q 004114 523 ALGDVVEGMLHFESM 537 (773)
Q Consensus 523 ~~G~~deA~~if~~M 537 (773)
..|++++|...|++.
T Consensus 84 ~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 84 AVKEYASALETLDAA 98 (126)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHH
Confidence 555555555554444
No 171
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.14 E-value=0.023 Score=60.53 Aligned_cols=196 Identities=5% Similarity=0.003 Sum_probs=142.1
Q ss_pred HcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 387 KEG--KVKEAIEVLGLLEKQCISVDLPTFSQLMQAC----GDA---KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 387 ~~G--~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~----~~~---g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
..+ ++++++++++.+.....+ +..+|+.--..+ ... +++++++.+++.+++.. +-+..+|+--.-++.+
T Consensus 79 ~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~ 156 (306)
T 3dra_A 79 NLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDT 156 (306)
T ss_dssp TCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 445 899999999999886432 334454433333 344 78999999999999875 3478888888888888
Q ss_pred CCChH--HHHHHHHHhhc---CCHhHHHHHHHHHHHcCC------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 458 CDSMD--DAFSVFSNMTE---RDLTSWDTMITGFAKNGL------GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 458 ~G~l~--eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~------~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
.|..+ ++++.+++|.+ +|-..|+--...+...+. ++++++.++++...... |...|+-+-..+.+.|+
T Consensus 157 l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 157 FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDR 235 (306)
T ss_dssp TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTC
T ss_pred hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCC
Confidence 88888 99999999985 477788877777777776 89999999999886543 66778777777778877
Q ss_pred hHH-HHHHHHHHHHhcC--CCCCcchhhhHHHHHHhCCCHHHHHHHHHhC--CCCCC-HHHHHHHH
Q 004114 527 VVE-GMLHFESMSKDYG--IVPSMKHYVSIVDMLGSTGYLDEALEFIEKM--PMEPD-VDVWEKLM 586 (773)
Q Consensus 527 ~de-A~~if~~M~~~~G--i~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M--~~~Pd-~~ty~~LI 586 (773)
..+ +..+..++... + -..+......|.++|.+.|+.++|.++++.+ .+.|- ..-|...+
T Consensus 236 ~~~~~~~~~~~~~~~-~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 236 SITQLEEFSLQFVDL-EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp CGGGGHHHHHTTEEG-GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ChHHHHHHHHHHHhc-cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 444 44555554321 1 1235677888999999999999999999988 24453 44555443
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.03 E-value=0.0078 Score=54.56 Aligned_cols=94 Identities=10% Similarity=0.101 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 004114 446 STYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG--LKPD----DQIFIG 516 (773)
Q Consensus 446 ~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G--v~Pd----~~Ty~~ 516 (773)
..+..|-..|.+.|++++|+..|++..+ | +...|+.+-.+|...|++++|++.|++.++.. ..++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3455667777788888888888877653 3 56777777888888888888888887766531 1112 124555
Q ss_pred HHHHHHcCCChHHHHHHHHHHHH
Q 004114 517 VFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 517 LL~a~~~~G~~deA~~if~~M~~ 539 (773)
+-.++...|++++|+..|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666677777777777766544
No 173
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.94 E-value=0.0034 Score=71.33 Aligned_cols=91 Identities=11% Similarity=0.010 Sum_probs=49.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC---CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CC-CCC-HH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQC---IS---VD-LPTFSQLMQACGDAKALEEAKAVHEHVERL-----LS-PLR-VS 446 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~G---v~---Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-----G~-~pd-~~ 446 (773)
.+..+...|++++|+.++++.++.. +- |+ ..+++.|..+|...|++++|..++++.++. |. -|+ ..
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3444556677777777776665321 11 21 235666666666666666666666655432 21 111 33
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHh
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNM 471 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M 471 (773)
+++.|...|...|++++|+.++++.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555666666666666666655543
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.93 E-value=0.0028 Score=57.20 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=45.2
Q ss_pred HHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 004114 519 SACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLE 596 (773)
Q Consensus 519 ~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e 596 (773)
..+...|++++|+..|+...+. -+-+...|..|-.++.+.|++++|...|++. .+.| +...|..|..++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3444555555555555554432 1123444445555555555555555555544 2223 3445555555666666666
Q ss_pred HHHHHHHHHHHcCCCC
Q 004114 597 LGDRCAEIVEQLDPSR 612 (773)
Q Consensus 597 ~A~~~~e~m~el~p~~ 612 (773)
+|...++.+.+++|..
T Consensus 103 ~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 103 AALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhCcCC
Confidence 6666666666555543
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.91 E-value=0.0084 Score=53.93 Aligned_cols=90 Identities=9% Similarity=0.004 Sum_probs=47.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+...+.+.|++++|+..|++..+.. +-+...|..+-.++...|++++|...++..++... -+...+..|..+|.+.|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 3445555666666666666655542 11444555555555555666666666655555431 134455555555555555
Q ss_pred hHHHHHHHHHhh
Q 004114 461 MDDAFSVFSNMT 472 (773)
Q Consensus 461 l~eA~~lf~~M~ 472 (773)
.++|+..|++..
T Consensus 101 ~~~A~~~~~~al 112 (121)
T 1hxi_A 101 ANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.90 E-value=0.0044 Score=69.98 Aligned_cols=116 Identities=10% Similarity=-0.030 Sum_probs=92.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChH
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMD 462 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~ 462 (773)
..+.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|.+.+++.++.. +-+..++..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999998762 2357889999999999999999999999999874 346788999999999999999
Q ss_pred HHHHHHHHhhc--C-CHhHHHHHHHH--HHHcCChHHHHHHHH
Q 004114 463 DAFSVFSNMTE--R-DLTSWDTMITG--FAKNGLGEDAVDIFS 500 (773)
Q Consensus 463 eA~~lf~~M~~--~-d~~tyn~LI~a--y~~~G~~deAl~Lf~ 500 (773)
+|++.|++..+ | +...+..+..+ +.+.|++++|+++++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999998763 3 44566666555 888899999999988
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.87 E-value=0.0084 Score=53.05 Aligned_cols=64 Identities=13% Similarity=-0.038 Sum_probs=32.8
Q ss_pred hhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 549 HYVSIVDMLGSTGYLDEALEFIEKM-PMEPD----VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 549 tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd----~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.+..+..+|.+.|++++|.+.|+.. ...|+ ...+..+..++...|+++.|...++.+.+..|++
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3334444455555555555555443 11121 3344455555566666666666666666666554
No 178
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.84 E-value=0.058 Score=63.55 Aligned_cols=93 Identities=11% Similarity=0.032 Sum_probs=46.7
Q ss_pred hcCChhHHHH-hh---h-hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004114 362 HEDDFAEASR-SS---Q-NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHV 436 (773)
Q Consensus 362 k~g~~~~A~~-v~---~-~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m 436 (773)
..+++++|.+ ++ . ......++..+.+.|..++|+++.++... -+......|++++|.++.+.+
T Consensus 611 ~~~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~------------~f~~~l~~~~~~~A~~~~~~~ 678 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQ------------KFELALKVGQLTLARDLLTDE 678 (814)
T ss_dssp HTTCHHHHHHHTGGGCCCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH------------HHHHHHHHTCHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCChHHheecCCCcch------------heehhhhcCCHHHHHHHHHhh
Confidence 4566666666 43 1 22223455556666666666655421110 012233455666665553321
Q ss_pred HHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 437 ERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 437 ~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
.+...|..|.+++.+.|+++.|++.|..+.
T Consensus 679 ------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 679 ------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp ------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 244556666666666666666666655543
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.82 E-value=0.0037 Score=67.10 Aligned_cols=149 Identities=11% Similarity=0.031 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS 522 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~ 522 (773)
...+..+-..|.+.|++++|+..|++..+ |+... +...|+.+++...+. ...|..+-.++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34566777778888888888888887653 22221 222333334333221 136777778888
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHHcCChhHHH
Q 004114 523 ALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNL-CRMHGNLELGD 599 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a-~~~~G~~e~A~ 599 (773)
+.|++++|+..+....+. -+-+...|..+..+|...|++++|.+.|++. .+.|+ ..++..|... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999998888887654 1235677888888899999999999998887 45554 3344444433 23345556667
Q ss_pred HHHHHHHHcCCCC
Q 004114 600 RCAEIVEQLDPSR 612 (773)
Q Consensus 600 ~~~e~m~el~p~~ 612 (773)
..+..+..+.|.+
T Consensus 320 ~~~~~~l~~~p~~ 332 (338)
T 2if4_A 320 EMYKGIFKGKDEG 332 (338)
T ss_dssp -------------
T ss_pred HHHHHhhCCCCCC
Confidence 7777777776655
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.78 E-value=0.03 Score=49.36 Aligned_cols=59 Identities=8% Similarity=-0.041 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD----DQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd----~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
|..+..+|...|++++|+..|++..... |+ ..++..+..++...|++++|..+|+.+.+
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444321 21 22333334444444444444444444433
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.75 E-value=0.013 Score=65.53 Aligned_cols=113 Identities=12% Similarity=0.002 Sum_probs=54.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCIS-VD-------------LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVS 446 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~-Pd-------------~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~ 446 (773)
+-..|.+.|++++|+..|.+.++..-. ++ ..+|..+..++.+.|++++|+..+...++.. +.+..
T Consensus 274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 352 (457)
T 1kt0_A 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEK 352 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHH
Confidence 556677788888888888877664211 11 2344444444444455555555554444432 11334
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGED 494 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~de 494 (773)
.|..+-.+|.+.|++++|+..|++..+. +...|..+..++.+.++.++
T Consensus 353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444321 23334444444444444433
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.73 E-value=0.017 Score=64.59 Aligned_cols=137 Identities=9% Similarity=-0.057 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHc
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKN 489 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~ 489 (773)
...|..+-..+.+.|++++|...|...++....... + .-+... ++......+|..+..+|.+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~----~~~~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK----ASESFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 445666666777777777777777777664211100 0 000000 01111235566666677777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHH
Q 004114 490 GLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEAL 567 (773)
Q Consensus 490 G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~ 567 (773)
|++++|+..|++.++..- -+...|..+-.+|...|++++|+..|.+..+ +.| +...+..|..++.+.++.++|.
T Consensus 331 g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666421 2345666666667777777777776666543 333 3455556666666666666554
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.65 E-value=0.002 Score=57.24 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
.|..|..+|...|++++|+..|++..+.... +..++..+..++...|++++|+.+|.+.
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444444443211 1333344444444444444444444443
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.62 E-value=0.0031 Score=55.97 Aligned_cols=84 Identities=7% Similarity=-0.043 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCI--SVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAF 465 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv--~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~ 465 (773)
.|++++|+..|++.++.+. +-+...+..+..++...|++++|...+++.++... -+..++..+..+|.+.|+.++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 3556666666666655421 11233455555555566666666666666655532 23455555555566666666666
Q ss_pred HHHHHhh
Q 004114 466 SVFSNMT 472 (773)
Q Consensus 466 ~lf~~M~ 472 (773)
..|++..
T Consensus 82 ~~~~~al 88 (117)
T 3k9i_A 82 ELLLKII 88 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.62 E-value=0.015 Score=63.23 Aligned_cols=136 Identities=10% Similarity=0.017 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHc
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKN 489 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~ 489 (773)
...+..+-..+.+.|++++|...|+..++.- +.. ...-..+++. .+...+..+|..+..+|.+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~----~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA----KLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG----GGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence 3456666666777777777777777666520 000 0000000000 01111334555555556666
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHH
Q 004114 490 GLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEA 566 (773)
Q Consensus 490 G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA 566 (773)
|++++|++.+++.++. .| +...+..+-.++...|++++|+..|++..+. .| +...+..|..++.+.++.++|
T Consensus 287 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555543 23 2344555555555556666665555554432 22 233344444444444444443
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.56 E-value=0.086 Score=56.68 Aligned_cols=188 Identities=11% Similarity=0.108 Sum_probs=132.3
Q ss_pred HhcCCH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHhhc---CCHhHHHHHHHHH
Q 004114 421 GDAKAL-EEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS----------MDDAFSVFSNMTE---RDLTSWDTMITGF 486 (773)
Q Consensus 421 ~~~g~l-e~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~----------l~eA~~lf~~M~~---~d~~tyn~LI~ay 486 (773)
.+.|.+ ++|+.+.+.++..... +..+|+.--..+...+. +++++.+++.+.. ++..+|+.-.-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344544 5789999988876432 44556553333333222 6788899988874 4778888888888
Q ss_pred HHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC---
Q 004114 487 AKNGL--GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD-VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST--- 560 (773)
Q Consensus 487 ~~~G~--~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~-~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~--- 560 (773)
...++ ++++++++++|.+...+ +..+|+.---.+...|. +++++..++.+.+. -+-+...|+....++.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence 88884 89999999999986543 66677776667777887 58999999998875 233556666555555544
Q ss_pred -----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHHcCCCC
Q 004114 561 -----------GYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMH-----------GNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 561 -----------G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~-----------G~~e~A~~~~e~m~el~p~~ 612 (773)
+.++++++++... ...| |...|+.+-..+.+. +.++++...++.+.+++|++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 4588899888876 3334 678887665555544 35678888899999999987
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.53 E-value=0.022 Score=53.11 Aligned_cols=61 Identities=8% Similarity=0.049 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
..+|..+..+|.+.|++++|+..+++..+ | +...|..+..+|...|++++|+..|++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34566666666777777777777666552 2 4566666777777777777777777766653
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.45 E-value=0.0034 Score=71.40 Aligned_cols=132 Identities=8% Similarity=-0.094 Sum_probs=80.7
Q ss_pred cHHHHHHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004114 323 QWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLE 402 (773)
Q Consensus 323 ~w~~a~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~ 402 (773)
+|.++...++++.++...+..........+++.|..+|...|++++|..+ +++|++++++..
T Consensus 324 ~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~------------------~~~aL~i~~~~l 385 (490)
T 3n71_A 324 LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHY------------------ARRMVDGYMKLY 385 (490)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH------------------HHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHH------------------HHHHHHHHHHHc
Confidence 45666666666555444332222222334667777777777777777763 345666665554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCC-CC-HHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 403 KQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL-----LSP-LR-VSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 403 ~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-----G~~-pd-~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
-....-...+++.|...|...|++++|+.++++.++. |.. |+ ..+.+.|-.++.+.+..++|+.+|.++.
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322223458899999999999999999999877653 322 11 2334445555666666667776666654
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.34 E-value=0.025 Score=61.57 Aligned_cols=134 Identities=10% Similarity=0.040 Sum_probs=85.3
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004114 376 NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMY 455 (773)
Q Consensus 376 ~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay 455 (773)
..+..+-..+.+.|++++|++.|.+.++.- +. +......+.+..+. +.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~----------~~~~~~~~~~~~~~--------~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG----------SRAAAEDADGAKLQ--------PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHHSCHHHHGGGH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hc----------CccccChHHHHHHH--------HHHHHHHHHHHHHH
Confidence 334457888999999999999999887630 00 00011111111110 11345677777788
Q ss_pred HhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHH
Q 004114 456 SECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGM 531 (773)
Q Consensus 456 ~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~ 531 (773)
.+.|++++|+..+++..+ | +...|..+..+|...|++++|+..|++..+. .| +...+..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877764 2 5667777888888888888888888887764 34 3445555555555555555544
No 190
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.32 E-value=0.13 Score=60.43 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=107.5
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh
Q 004114 383 DGLVKEGKVKEAIE-VLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSM 461 (773)
Q Consensus 383 ~a~~~~G~~~eAl~-lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l 461 (773)
......+++++|.+ ++.. + ++......++..+.+.|.+++|+++.+... .-......+|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 34456889999877 5521 1 112233777788889999999987763211 123456778999
Q ss_pred HHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhc
Q 004114 462 DDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDY 541 (773)
Q Consensus 462 ~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~ 541 (773)
++|+++.+.+. +...|..|...+.+.|+++.|.+.|.++.. |..|...+...++.+...++.+.....
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~- 736 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT- 736 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 99999987764 668999999999999999999999998754 444555555577777655554443332
Q ss_pred CCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCC
Q 004114 542 GIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMP 574 (773)
Q Consensus 542 Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~ 574 (773)
| -++.-..+|.+.|++++|.+++.+++
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2 23445556667778888877777775
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.30 E-value=0.032 Score=51.47 Aligned_cols=110 Identities=12% Similarity=-0.031 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----CCChHHH
Q 004114 389 GKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE----CDSMDDA 464 (773)
Q Consensus 389 G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k----~G~l~eA 464 (773)
+++++|++.|++..+.| .|+.. |-..+.....++.|.+.|....+.| +...+..|-.+|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35677777777777776 33333 4444555566777777777777764 45566667677766 6677777
Q ss_pred HHHHHHhhc-CCHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 004114 465 FSVFSNMTE-RDLTSWDTMITGFAK----NGLGEDAVDIFSQFKQAG 506 (773)
Q Consensus 465 ~~lf~~M~~-~d~~tyn~LI~ay~~----~G~~deAl~Lf~eM~~~G 506 (773)
+..|++..+ .+..++..|-..|.. .++.++|+.+|++-.+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777776654 356666666666666 667777777777666654
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.25 E-value=0.014 Score=62.50 Aligned_cols=137 Identities=13% Similarity=0.015 Sum_probs=60.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+-..+.+.|++++|+..|.+..+. .|+... +...+..+++...+. ..+|..+..+|.+.|+
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHHcCC
Confidence 344555667777777777766553 233221 112222333222111 1256666667777777
Q ss_pred hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHH-HHcCCChHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQI-FIGVFSA-CSALGDVVEGMLHFE 535 (773)
Q Consensus 461 l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~T-y~~LL~a-~~~~G~~deA~~if~ 535 (773)
+++|+..|++..+ | +...|..+..+|...|++++|+..|++..+ +.|+... +..|... ....+..+++..+|.
T Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776652 2 556677777777777777777777776654 2344332 2222222 123345556666666
Q ss_pred HHH
Q 004114 536 SMS 538 (773)
Q Consensus 536 ~M~ 538 (773)
.|.
T Consensus 324 ~~l 326 (338)
T 2if4_A 324 GIF 326 (338)
T ss_dssp ---
T ss_pred Hhh
Confidence 664
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.18 E-value=0.21 Score=57.60 Aligned_cols=154 Identities=9% Similarity=-0.021 Sum_probs=105.0
Q ss_pred hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC--
Q 004114 461 MDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGL----------GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALG-- 525 (773)
Q Consensus 461 l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~----------~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G-- 525 (773)
-++|++.++++.+ | +..+|+.--.++...|+ +++|+++++++.+..-+ +..+|..--.++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 3566777766653 2 44556655555555555 77888888888775432 4556666666667777
Q ss_pred ChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----------
Q 004114 526 DVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG-YLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMH---------- 592 (773)
Q Consensus 526 ~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G-~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~---------- 592 (773)
+++++..+++++.+. -+-+...|+.---++.+.| ..++|.+.++++ ...| |...|+....++.+.
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 668888888887664 2234566666666677777 788888888887 4344 577888777776663
Q ss_pred ----CChhHHHHHHHHHHHcCCCCchHHH
Q 004114 593 ----GNLELGDRCAEIVEQLDPSRLNEKS 617 (773)
Q Consensus 593 ----G~~e~A~~~~e~m~el~p~~~~~y~ 617 (773)
+.+++|.+.++...+++|++..++.
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 4467888888888999999975543
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.08 E-value=0.24 Score=57.12 Aligned_cols=136 Identities=9% Similarity=0.079 Sum_probs=79.2
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCCCHHHH
Q 004114 381 QLDGLVKEGKV-KEAIEVLGLLEKQCISVD-LPTFSQLMQACGDAKA----------LEEAKAVHEHVERLLSPLRVSTY 448 (773)
Q Consensus 381 LI~a~~~~G~~-~eAl~lf~~M~~~Gv~Pd-~~ty~~LL~a~~~~g~----------le~A~~l~~~m~k~G~~pd~~ty 448 (773)
.+.++.+.|.+ ++|+++++++.+. .|+ ..+|+.--.++...++ +++++++++.+++...+ +..+|
T Consensus 34 ~~~~~~~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW 110 (567)
T 1dce_A 34 AVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTW 110 (567)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHH
Confidence 34444445543 4667888777765 333 3345544444444444 67777777777765433 55666
Q ss_pred HHHHHHHHhCC--ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 449 NGILKMYSECD--SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNG-LGEDAVDIFSQFKQAGLKPDDQIFIGVFSA 520 (773)
Q Consensus 449 naLI~ay~k~G--~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G-~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a 520 (773)
.----++.+.+ ++++|++.+++|.+ ++..+|+----.+.+.| .++++++.++++.+.... |...|.....+
T Consensus 111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~l 187 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHH
Confidence 66666666666 55777777776663 35566666666666666 666777776666654322 34444444333
No 195
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.08 E-value=0.06 Score=50.09 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=35.5
Q ss_pred hhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 549 HYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 549 tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
.|..+..+|.+.|++++|...++.. .+.| +...|..+-.++...|+++.|...++...+++|.+.
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 4444455555555555555555443 2222 345555566666666666666666666666666554
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.92 E-value=0.016 Score=55.65 Aligned_cols=64 Identities=17% Similarity=0.117 Sum_probs=46.3
Q ss_pred hhhhHHHHHHhCCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 549 HYVSIVDMLGSTGYLDEALEFIEKM--------PMEPD-VDVW----EKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 549 tyn~LI~~y~r~G~l~eA~~lf~~M--------~~~Pd-~~ty----~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.|..+-.++.+.|++++|+..+++. .+.|+ ...| ...-.++...|++++|...++...++.|++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 4444555555555555555554433 34776 4577 888889999999999999999999998876
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.0098 Score=50.98 Aligned_cols=59 Identities=8% Similarity=-0.029 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 413 y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
+..+-..+...|++++|...++..++.. +.+..++..+..+|.+.|++++|+..|++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3334444444444444444444444432 1233444444444444444444444444433
No 198
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.81 E-value=0.63 Score=52.52 Aligned_cols=257 Identities=6% Similarity=-0.041 Sum_probs=140.0
Q ss_pred CCCHHHHHHHHHHHHhcCCh-hHHHHhhhh--------ccHHHHHHHHH--------HcCCHHHHHHHHHHHHHCCCCCC
Q 004114 347 IQNGMMASQVLNNCKHEDDF-AEASRSSQN--------NGTLEQLDGLV--------KEGKVKEAIEVLGLLEKQCISVD 409 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~-~~A~~v~~~--------~~~~~LI~a~~--------~~G~~~eAl~lf~~M~~~Gv~Pd 409 (773)
.|++.+|...+....+.+.- +....++.. .....+=..|+ ..++++.+..+|++.+...+.--
T Consensus 44 ~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~ 123 (493)
T 2uy1_A 44 SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSL 123 (493)
T ss_dssp CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTH
T ss_pred CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhH
Confidence 47999999888888776632 222222111 00112333333 24567889999999887321111
Q ss_pred HHHHHHHHHHHH-------------hcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC-C------hHHHHHHHH
Q 004114 410 LPTFSQLMQACG-------------DAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD-S------MDDAFSVFS 469 (773)
Q Consensus 410 ~~ty~~LL~a~~-------------~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G-~------l~eA~~lf~ 469 (773)
...|......-. ....+..|+.++..+...--..+...|...++.-...+ . .+.+..+|+
T Consensus 124 ~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye 203 (493)
T 2uy1_A 124 SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN 203 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence 112221111000 11223344555555443210123445666555433221 1 244677888
Q ss_pred Hhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcC----
Q 004114 470 NMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYG---- 542 (773)
Q Consensus 470 ~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~G---- 542 (773)
++.. | ....|-..+.-+.+.|+.++|..+|++.... |....+.. +|+.....++. ++.+...+-
T Consensus 204 ~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 204 YILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhcc
Confidence 8774 3 6778888888889999999999999999887 55443222 22222122222 333322210
Q ss_pred ----CCC---CcchhhhHHHHHHhCCCHHHHHHHHHhCCCC-CCHHHHH--HHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 543 ----IVP---SMKHYVSIVDMLGSTGYLDEALEFIEKMPME-PDVDVWE--KLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 543 ----i~P---d~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~-Pd~~ty~--~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
..+ ....|...+..+.+.+.++.|..+|+..... .+..+|. +.+...+ .++.+.|..+++...+..|+.
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~~ 353 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPDS 353 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTTC
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCCC
Confidence 001 1245677777777788899999999887211 2334443 3343333 336899999999988877776
Q ss_pred c
Q 004114 613 L 613 (773)
Q Consensus 613 ~ 613 (773)
+
T Consensus 354 ~ 354 (493)
T 2uy1_A 354 T 354 (493)
T ss_dssp H
T ss_pred H
Confidence 5
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.69 E-value=0.061 Score=51.66 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCCCCHH-HH----HHHHHHHHcCCChHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQA-----GLKPDDQ-IF----IGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~-----Gv~Pd~~-Ty----~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
.|..+-.++.+.|++++|+..|++.++. -+.|+.. .| ...-.++...|++++|+..|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 6777777777777777777777776652 1256543 45 566666777777777777776654
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.57 E-value=0.095 Score=45.60 Aligned_cols=78 Identities=10% Similarity=-0.006 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 393 EAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 393 eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
+|++.|.+..+.. +-+...+..+..++...|++++|...++..++.. +.+..+|..+..+|.+.|+.++|+..|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666665542 2255666677777777777777777777777653 2345666777777777777777777776654
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.048 Score=46.45 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
.|..+...+...|++++|++.|++..+.. ..+..++..+-.++...|++++|+..+++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34444444444444444444444444321 112333334444444444444444444433
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.52 E-value=0.033 Score=48.68 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 429 AKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 429 A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
|...++..++.. +.+...+..+..+|.+.|++++|+..|++..+ | +...|..+..+|...|++++|+..|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555554432 22455555566666666666666666665542 2 345555555666666666666666655543
No 203
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=95.42 E-value=0.93 Score=48.93 Aligned_cols=166 Identities=11% Similarity=0.126 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHc-C-ChHHHHH
Q 004114 424 KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD-SMDDAFSVFSNMTE---RDLTSWDTMITGFAKN-G-LGEDAVD 497 (773)
Q Consensus 424 g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G-~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~-G-~~deAl~ 497 (773)
..-++|+++++.++..... +..+|+.--..+...| .+++++++++.+.. ++..+|+.-...+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3446788899988887533 5667887777777778 59999999998874 3667788777777766 6 8889999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCChH--------HHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCC-------
Q 004114 498 IFSQFKQAGLKPDDQIFIGVFSACSALGDVV--------EGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY------- 562 (773)
Q Consensus 498 Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~d--------eA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~------- 562 (773)
+++++.+...+ +..+|..-.-.+.+.+.++ ++++.++++.+. -.-+...|+..-.++.+.++
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHH
Confidence 99988875432 4555554444444434343 566666666553 12244445554445555444
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 004114 563 LDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHG 593 (773)
Q Consensus 563 l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G 593 (773)
++++++.++++ ...| |...|..+-..+.+.|
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 44555555443 1122 3445544444444333
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.41 E-value=0.12 Score=47.50 Aligned_cols=110 Identities=12% Similarity=-0.007 Sum_probs=86.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-CCHhHHHHHHHHHHH----cCChHHHHH
Q 004114 423 AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE-RDLTSWDTMITGFAK----NGLGEDAVD 497 (773)
Q Consensus 423 ~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~-~d~~tyn~LI~ay~~----~G~~deAl~ 497 (773)
.+++++|...|....+.|. ++.. |-.+|...+.+++|++.|++..+ .+...+..|-..|.. .++.++|++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3468899999999998883 3443 77777777888999999987765 477888888888888 788999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHh
Q 004114 498 IFSQFKQAGLKPDDQIFIGVFSACSA----LGDVVEGMLHFESMSKD 540 (773)
Q Consensus 498 Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~----~G~~deA~~if~~M~~~ 540 (773)
+|++..+.| +...+..|-..|.. .++.++|..+|+...+.
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999988875 45566666667766 78888888888877554
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.88 E-value=0.27 Score=39.96 Aligned_cols=26 Identities=15% Similarity=0.424 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
+|..+...|...|++++|+..|++..
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 45 AWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.66 E-value=0.24 Score=40.33 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=41.7
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 004114 476 LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKD 540 (773)
Q Consensus 476 ~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~ 540 (773)
...|..+...|...|++++|+..|++..+.. .-+..++..+..++...|++++|...|++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455666666777777777777777766542 123456666667777777777777777766543
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.46 E-value=0.076 Score=59.24 Aligned_cols=82 Identities=6% Similarity=-0.046 Sum_probs=50.9
Q ss_pred hcCCHHHHHHHHHHHHHh---CCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHhhc----------C-CHhHHHHHH
Q 004114 422 DAKALEEAKAVHEHVERL---LSPLR----VSTYNGILKMYSECDSMDDAFSVFSNMTE----------R-DLTSWDTMI 483 (773)
Q Consensus 422 ~~g~le~A~~l~~~m~k~---G~~pd----~~tynaLI~ay~k~G~l~eA~~lf~~M~~----------~-d~~tyn~LI 483 (773)
..|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|+.++++..+ | ...+++.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346677777777666553 11121 35677777777777777777777766542 1 234566677
Q ss_pred HHHHHcCChHHHHHHHHHHH
Q 004114 484 TGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 484 ~ay~~~G~~deAl~Lf~eM~ 503 (773)
..|...|++++|+.+|++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 77777777777777766543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.43 E-value=0.29 Score=41.85 Aligned_cols=61 Identities=25% Similarity=0.176 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNM 471 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M 471 (773)
...+..+..++...|++++|...|+..++... -+..+|..|-.+|.+.|++++|++.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444555555555555555555555555432 13344555555555555555555555543
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.34 E-value=0.14 Score=43.93 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=31.3
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 475 d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+...|..+...|...|++++|+..|++..+.... +..+|..+-.++...|++++|...|++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555555555555555555555543211 2334445555555555555555555443
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.30 E-value=0.17 Score=56.19 Aligned_cols=90 Identities=13% Similarity=0.028 Sum_probs=52.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CC-CCC-HH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQC---ISVD----LPTFSQLMQACGDAKALEEAKAVHEHVERL-----LS-PLR-VS 446 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~G---v~Pd----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-----G~-~pd-~~ 446 (773)
.|..+.+.|++++|++++++.++.- +.|+ ..+++.|..+|...|++++|+.++.++++. |- .|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 4566667778888888877776431 1221 235666666677777777777776665542 11 111 33
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSN 470 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~ 470 (773)
+++.|-..|...|++++|+.++++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 455555566666666666655554
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.21 E-value=0.32 Score=52.93 Aligned_cols=72 Identities=15% Similarity=-0.026 Sum_probs=57.3
Q ss_pred CCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 544 VPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 544 ~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
+.+..+|.++.-++...|++++|...+++. .+.|+...|..+-..+...|+.++|...++...+++|.....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 446677777777777779999999999887 445787777777778888999999999999999999877543
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.17 E-value=0.24 Score=55.11 Aligned_cols=85 Identities=8% Similarity=-0.076 Sum_probs=54.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHhC---CCCC----HHHHHHHHHHHHhCCChHHHHHHHHHhhc----------C-CHhHHH
Q 004114 419 ACGDAKALEEAKAVHEHVERLL---SPLR----VSTYNGILKMYSECDSMDDAFSVFSNMTE----------R-DLTSWD 480 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~G---~~pd----~~tynaLI~ay~k~G~l~eA~~lf~~M~~----------~-d~~tyn 480 (773)
.+.+.|++++|+.++++.++.- +.++ ..+++.|..+|...|++++|+.+++++.+ | ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3456677788888877776541 1122 45677777777777777777777766542 1 234566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 004114 481 TMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 481 ~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
.|...|...|++++|+.++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 67777777777777777666554
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.77 E-value=0.14 Score=49.10 Aligned_cols=93 Identities=13% Similarity=0.116 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHc--
Q 004114 425 ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS----------MDDAFSVFSNMTE--R-DLTSWDTMITGFAKN-- 489 (773)
Q Consensus 425 ~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~----------l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~-- 489 (773)
.+++|...++..++.. +-+...|..+-.++.+.++ +++|+..|++..+ | +..+|..+-.+|...
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3444444444444432 1234444444444444433 4577777766652 3 556677777777665
Q ss_pred ---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 490 ---------GLGEDAVDIFSQFKQAGLKPDDQIFIGVFSA 520 (773)
Q Consensus 490 ---------G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a 520 (773)
|++++|++.|++..+ +.|+..+|...+..
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 478888888888877 46777767655554
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.49 E-value=0.7 Score=50.26 Aligned_cols=136 Identities=7% Similarity=-0.017 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHH----hCC----C---hHHHHHHHH
Q 004114 407 SVDLPTFSQLMQACGD-----AKALEEAKAVHEHVERLLSPLR-VSTYNGILKMYS----ECD----S---MDDAFSVFS 469 (773)
Q Consensus 407 ~Pd~~ty~~LL~a~~~-----~g~le~A~~l~~~m~k~G~~pd-~~tynaLI~ay~----k~G----~---l~eA~~lf~ 469 (773)
+.+...|...+.+... ...+.+|+.+|++.++. .|+ ...|..+.-+|. ... . +..|.+...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3455556665555432 12356777777777775 344 333433333332 100 0 111111111
Q ss_pred Hhh--cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCc
Q 004114 470 NMT--ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSM 547 (773)
Q Consensus 470 ~M~--~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~ 547 (773)
.+. ..+..+|.++...+...|++++|+..+++....+ |+...|..+-..+...|+.++|.+.|++... +.|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCc
Confidence 111 2356666666666666677777777777777764 6666666666666777777777777765533 34544
Q ss_pred ch
Q 004114 548 KH 549 (773)
Q Consensus 548 ~t 549 (773)
.+
T Consensus 344 ~t 345 (372)
T 3ly7_A 344 NT 345 (372)
T ss_dssp HH
T ss_pred Ch
Confidence 44
No 215
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.39 E-value=1.3 Score=43.12 Aligned_cols=129 Identities=14% Similarity=0.092 Sum_probs=81.5
Q ss_pred HHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 004114 453 KMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
+....+|+++.|.++.+++ .+...|..|-......|+++-|.+.|.+... |..|+--|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4455678888888887766 4667888888888888888888888877543 3444444555666665554
Q ss_pred HHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004114 533 HFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 533 if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
+-+....+ | -++.-...+.-.|+++++.++|.+.+.-|.... ....+|..+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 43322222 2 345556667778899999999888864332221 123366666666665543
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.07 E-value=0.1 Score=58.23 Aligned_cols=97 Identities=9% Similarity=-0.019 Sum_probs=58.6
Q ss_pred cHHHHHHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004114 323 QWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLE 402 (773)
Q Consensus 323 ~w~~a~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~ 402 (773)
+|.++...++++.++...+.......-..+++.|..+|...|++++|..+ .++|++++++..
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~------------------~~~aL~i~~~~l 374 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKY------------------GQKIIKPYSKHY 374 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH------------------HHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHH------------------HHHHHHHHHHHc
Confidence 45666666666555443322222222234566666666666666666663 344555555443
Q ss_pred HCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004114 403 KQCISVD-LPTFSQLMQACGDAKALEEAKAVHEHVER 438 (773)
Q Consensus 403 ~~Gv~Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~k 438 (773)
-.. .|+ ..+|+.|-..|...|++++|+.++++.++
T Consensus 375 G~~-Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 375 PVY-SLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp CSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCC-ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 322 333 34788889999999999999999887765
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=92.35 E-value=0.59 Score=38.98 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=40.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLP-TFSQLMQACGDAKALEEAKAVHEHVERLL 440 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~-ty~~LL~a~~~~g~le~A~~l~~~m~k~G 440 (773)
....+.+.|++++|++.|++..+.. .-+.. .+..+-.++...|++++|...|+..++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4455667777788888877777652 22445 66666777777777777777777777764
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=91.15 E-value=0.49 Score=39.48 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=40.8
Q ss_pred HHHHHhCCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 554 VDMLGSTGYLDEALEFIEKM-PMEP-DVD-VWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 554 I~~y~r~G~l~eA~~lf~~M-~~~P-d~~-ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
...+.+.|++++|.+.|++. ...| +.. .|..+-.++...|++++|...++...+++|++..++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 44556667777777777665 2233 345 666666677777777777777777777777765443
No 219
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=90.58 E-value=0.67 Score=44.30 Aligned_cols=113 Identities=12% Similarity=0.028 Sum_probs=79.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKA----------LEEAKAVHEHVERLLSPLRVSTYNGILKM 454 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~----------le~A~~l~~~m~k~G~~pd~~tynaLI~a 454 (773)
..+.+.+++|+..+++..+.. +-+...|..+-.++...+. +++|+..|++.++.... ...+|..|-.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 345667889999999988763 3367777777777777665 46999999999987532 57788899999
Q ss_pred HHhCC-----------ChHHHHHHHHHhh--cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 455 YSECD-----------SMDDAFSVFSNMT--ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 455 y~k~G-----------~l~eA~~lf~~M~--~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
|.+.| ++++|+..|++.. +|+-..|..-+.. .++|.+++-+....
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH------HHTHHHHHHHHHHS
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH------HHhCHhccCccccc
Confidence 98774 8999999999887 4665554433332 24455555444433
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=89.15 E-value=0.78 Score=43.55 Aligned_cols=72 Identities=14% Similarity=0.015 Sum_probs=45.5
Q ss_pred CCcchhhhHHHHHHhCC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 545 PSMKHYVSIVDMLGSTG---YLDEALEFIEKM-PME-P--DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 545 Pd~~tyn~LI~~y~r~G---~l~eA~~lf~~M-~~~-P--d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
++..+.-.+.-++++.. +++++..+|++. ... | ....+-.|--++.+.|++++|.+.++.+.+++|++..+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34444444445555555 444555555544 112 3 234455666788999999999999999999999885443
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=87.15 E-value=2.1 Score=36.87 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=44.7
Q ss_pred hhhhHHHHHHhCCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 549 HYVSIVDMLGSTGYLDEALEFIEKM-----P----MEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 549 tyn~LI~~y~r~G~l~eA~~lf~~M-----~----~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
-+..|-..+.+.|++..|...|+.. + -.+...++..|..++.+.|+++.|...++.+.+++|++..+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3344455555555555555555443 0 12346677888888888888888888888888888888544
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.62 E-value=24 Score=34.10 Aligned_cols=128 Identities=12% Similarity=0.059 Sum_probs=75.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHH
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIF 499 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf 499 (773)
....|+++.|.++.+.+ -+...|..|-+...+.|+++-|++.|..... |..+.--|.-.|+.++..++-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHH
Confidence 44667777777776654 3566788888888888888888888877653 344444555566666655544
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCC
Q 004114 500 SQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMP 574 (773)
Q Consensus 500 ~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~ 574 (773)
+.-...| -++....++...|+++++.++|.+. |..|.. +-.....|.-+.|.++.++++
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~----~r~~eA------~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG----GSLPLA------YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT----TCHHHH------HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC----CChHHH------HHHHHHcCcHHHHHHHHHHhC
Confidence 4433333 1444445555677888777776543 221210 111122456667777777764
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=86.16 E-value=5.6 Score=37.60 Aligned_cols=83 Identities=11% Similarity=0.015 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHhhcCC-----HhHHHHHHHHHHHcCChHHHHH
Q 004114 426 LEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD---SMDDAFSVFSNMTERD-----LTSWDTMITGFAKNGLGEDAVD 497 (773)
Q Consensus 426 le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G---~l~eA~~lf~~M~~~d-----~~tyn~LI~ay~~~G~~deAl~ 497 (773)
+..+++-|....+.+. ++..+...+--++++.. ++++++.+|++..+.+ ...+-.|--+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4445555555555443 45556666666666666 5556766666655332 2334445566677777777777
Q ss_pred HHHHHHHCCCCCCH
Q 004114 498 IFSQFKQAGLKPDD 511 (773)
Q Consensus 498 Lf~eM~~~Gv~Pd~ 511 (773)
.++.+++ +.|+-
T Consensus 93 y~~~lL~--ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHh--cCCCC
Confidence 7777776 45643
No 224
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.35 E-value=6.1 Score=42.90 Aligned_cols=129 Identities=11% Similarity=0.044 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHh--CCC-CCHHHHHHHHHHHHhCCChHHH-HHHHHHhhcCCHhHHH
Q 004114 408 VDLPTFSQLMQACG---DAKALEEAKAVHEHVERL--LSP-LRVSTYNGILKMYSECDSMDDA-FSVFSNMTERDLTSWD 480 (773)
Q Consensus 408 Pd~~ty~~LL~a~~---~~g~le~A~~l~~~m~k~--G~~-pd~~tynaLI~ay~k~G~l~eA-~~lf~~M~~~d~~tyn 480 (773)
.|...|..++.... ..|+.+.|.+.+..++.. |-. ++.. ...+-.+ ..-++++ =..+..
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~---~~~a~~ 175 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVED---KVLAHT 175 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHH---HHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHH---HHHHHH
Confidence 35566666665433 357888888888877765 321 1110 0111111 1112211 123445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH----hcCCCCCcchhh
Q 004114 481 TMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK----DYGIVPSMKHYV 551 (773)
Q Consensus 481 ~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~----~~Gi~Pd~~tyn 551 (773)
.++..+...|++++|+..+..+.... .-+...+..||.++...|+..+|.++|+.+.+ ++|+.|...+-.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 67788889999999999888887642 33677899999999999999999998887644 569999876643
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=84.91 E-value=5.3 Score=37.33 Aligned_cols=59 Identities=19% Similarity=0.076 Sum_probs=29.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~ 441 (773)
++.++..|+-+.-.+++..+.. ..+|++...-.+..||.+.|+..+|.+++.+..+.|+
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 4445555555555555544322 2344455555555555555555555555555555554
No 226
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.12 E-value=21 Score=39.49 Aligned_cols=185 Identities=12% Similarity=0.160 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCCHHH--HHHHHHHHHhCCC
Q 004114 389 GKVKEAIEVLGLLEKQ-----CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL-LSPLRVST--YNGILKMYSECDS 460 (773)
Q Consensus 389 G~~~eAl~lf~~M~~~-----Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-G~~pd~~t--ynaLI~ay~k~G~ 460 (773)
+++++|++.+..+.+. ...-.......++..|...++++...+.+..+.+. |......+ ...+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5677777777666532 24445667788888999999999888877766554 43322221 1222333333332
Q ss_pred hH--HHHHHHHHhhc----C------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHc
Q 004114 461 MD--DAFSVFSNMTE----R------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA--GLKPD---DQIFIGVFSACSA 523 (773)
Q Consensus 461 l~--eA~~lf~~M~~----~------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~--Gv~Pd---~~Ty~~LL~a~~~ 523 (773)
.+ .-..+.+.... + -......|...|...|++.+|.+++.++... |.... ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 22223322221 1 1123456778889999999999999998653 32222 2356777888999
Q ss_pred CCChHHHHHHHHHHHHh-cCC--CCC--cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 524 LGDVVEGMLHFESMSKD-YGI--VPS--MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 524 ~G~~deA~~if~~M~~~-~Gi--~Pd--~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
.+++..|..++.++... ... .|+ ...|.+++..+...+++.+|...|.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999888886432 112 222 356778888888899999888777665
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=83.72 E-value=29 Score=32.47 Aligned_cols=84 Identities=11% Similarity=0.118 Sum_probs=57.2
Q ss_pred hCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFES 536 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~ 536 (773)
+||.+......+-.+- .+....+.-++.+...|+-|.-.+++.++.. +-+|+......+..||.+.|+..+|.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4555555555554443 3445566677778888888888888877533 3566777778888888888888888888777
Q ss_pred HHHhcCC
Q 004114 537 MSKDYGI 543 (773)
Q Consensus 537 M~~~~Gi 543 (773)
.-+. |+
T Consensus 151 AC~k-G~ 156 (172)
T 1wy6_A 151 ACKK-GE 156 (172)
T ss_dssp HHHT-TC
T ss_pred HHHh-hh
Confidence 6655 54
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=83.03 E-value=6.9 Score=33.27 Aligned_cols=62 Identities=5% Similarity=0.004 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHhCCC---hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 444 RVSTYNGILKMYSECDS---MDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~---l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
+...+..+..++...++ .++|..+|++..+ | ++.++..+-..+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433222 4555555555442 2 3444445555555566666666666655553
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=81.75 E-value=5.2 Score=36.63 Aligned_cols=75 Identities=17% Similarity=0.061 Sum_probs=47.0
Q ss_pred CCcchhhhHHHHHHhCCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHH
Q 004114 545 PSMKHYVSIVDMLGSTGYLDE---ALEFIEKM-PME-P--DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKS 617 (773)
Q Consensus 545 Pd~~tyn~LI~~y~r~G~l~e---A~~lf~~M-~~~-P--d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~ 617 (773)
++..+--.+.-++.+...... +..+++++ ... | .....-.|.-++.+.|++++|.+.++.+.+++|++..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444445555555554443 55666555 212 3 1223335666889999999999999999999999865544
Q ss_pred Hc
Q 004114 618 KA 619 (773)
Q Consensus 618 ~a 619 (773)
..
T Consensus 113 Lk 114 (126)
T 1nzn_A 113 LE 114 (126)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=80.90 E-value=9.4 Score=32.41 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 004114 408 VDLPTFSQLMQACGDAKA---LEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE 473 (773)
Q Consensus 408 Pd~~ty~~LL~a~~~~g~---le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~ 473 (773)
.|...+..+..++...++ .++|..++++.++.. +-++.....|-..+.+.|++++|+..|+++.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555565566554433 688888888887764 22566666677778888888888888888774
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=80.60 E-value=0.041 Score=61.67 Aligned_cols=162 Identities=13% Similarity=0.185 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL 524 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~ 524 (773)
.|..+|.+..+.|.+++-++.+....+ ++...=+.||-+|++.++..+..+++ -.|+..-...+-.-|...
T Consensus 85 ~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e 157 (624)
T 3lvg_A 85 SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDE 157 (624)
T ss_dssp SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHc
Confidence 344555555555555555555443332 23344455666666666655544433 135555556666666677
Q ss_pred CChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 525 GDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 525 G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
|.++.|..+|..+ .-|.-|...|.+.|++..|.+.-.+. -+..||.-+-.||...+.+..|..+--.
T Consensus 158 ~lYeAAKilys~i----------sN~akLAstLV~L~~yq~AVdaArKA---ns~ktWKeV~~ACvd~~EfrLAqicGLn 224 (624)
T 3lvg_A 158 KMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLH 224 (624)
T ss_dssp CCSTTSSTTGGGS----------CCCTTTSSSSSSCSGGGSSTTTTTTC---CSSCSHHHHTHHHHHSCTTTTTTHHHHH
T ss_pred cCHHHHHHHHHhC----------ccHHHHHHHHHHHHHHHHHHHHHHhc---CChhHHHHHHHHHhCchHHHHHHHhcch
Confidence 7766666655433 22334444456667777666655544 3677999999999999999998655433
Q ss_pred HHHcCCCCc----hHHHHcCCchhhhhHH
Q 004114 605 VEQLDPSRL----NEKSKAGLVPVNASEL 629 (773)
Q Consensus 605 m~el~p~~~----~~y~~aG~~~~~v~~l 629 (773)
+. +.|+.+ ..|...|.+.+.+.-+
T Consensus 225 iI-vhadeL~elv~~YE~~G~f~ELIsLl 252 (624)
T 3lvg_A 225 IV-VHADELEELINYYQDRGYFEELITML 252 (624)
T ss_dssp HH-CCSSCCSGGGSSSSTTCCCTTSTTTH
T ss_pred hc-ccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 32 234432 5678888886554433
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=79.81 E-value=8.5 Score=32.94 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=10.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
+..|..+|.+.|++++|+.++++..
T Consensus 49 ~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 49 LDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 233
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.26 E-value=67 Score=33.79 Aligned_cols=170 Identities=9% Similarity=0.021 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHHhcCC-
Q 004114 351 MMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEV----LGLLEKQCISVDLPTFSQLMQACGDAKA- 425 (773)
Q Consensus 351 ~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~l----f~~M~~~Gv~Pd~~ty~~LL~a~~~~g~- 425 (773)
.++-++..-|.+.+++++|.+++. .-...+.+.|+...|-++ ++.+.+.++++|......|+..+.....
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~-----~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~ 108 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELIS-----QGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPS 108 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-----HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHH-----HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCC
Confidence 366688888889999999998622 234556677887776665 4555667889998888888877765331
Q ss_pred ----HHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHc---CChHHHH
Q 004114 426 ----LEEAKAVHEHVERLLS--PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKN---GLGEDAV 496 (773)
Q Consensus 426 ----le~A~~l~~~m~k~G~--~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~---G~~deAl 496 (773)
.+-..+......+.|- .-|......+-..|.+.|++.+|+.-|-.-...|...+-.|+.-+... |...++-
T Consensus 109 ~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d 188 (312)
T 2wpv_A 109 EPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVA 188 (312)
T ss_dssp CTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred CchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHH
Confidence 1222233333333322 236677888888899999999998877633222455555555444443 4443321
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 004114 497 DIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKD 540 (773)
Q Consensus 497 ~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~ 540 (773)
- ..-.++| -|.-.+++..|..+|+...+.
T Consensus 189 l--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 189 E--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp H--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 1 1122222 233567888888888776544
No 234
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.54 E-value=9 Score=33.76 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHH
Q 004114 491 LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFI 570 (773)
Q Consensus 491 ~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf 570 (773)
+.-++.+-+..+....+.|+.....+.|.||.+..++..|.++|+.++.+.| ....+|..+++ +-.-++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq---------ElkPtl 93 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ---------ELRPTL 93 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH---------HHhhHH
Confidence 4456666677777778999999999999999999999999999999977644 44567877774 455666
Q ss_pred HhCCC
Q 004114 571 EKMPM 575 (773)
Q Consensus 571 ~~M~~ 575 (773)
+++|+
T Consensus 94 ~ELGI 98 (109)
T 1v54_E 94 NELGI 98 (109)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 66654
No 235
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.49 E-value=74 Score=33.85 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHHhc
Q 004114 352 MASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVL----GLLEKQCISVDLPTFSQLMQACGDA 423 (773)
Q Consensus 352 ~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf----~~M~~~Gv~Pd~~ty~~LL~a~~~~ 423 (773)
++-++..-|.+.+++++|++++. .-...+.+.|...-|.+|- +.+.+.++++|..+...|+..+...
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~-----~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA-----SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-----HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH-----HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 44455555666666666666411 1233444455554444443 3334455566655555555554433
No 236
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.01 E-value=5.7 Score=39.49 Aligned_cols=178 Identities=9% Similarity=-0.050 Sum_probs=75.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDL---PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVS--TYNGILKMY 455 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~---~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~--tynaLI~ay 455 (773)
.+...+..|+.+ +++.+.+.|..++. .-. +.|...+..|..+.+ +.+++.|..++.. ...+.+...
T Consensus 42 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A 112 (285)
T 1wdy_A 42 PLHNAVQMSRED----IVELLLRHGADPVLRKKNGA-TPFLLAAIAGSVKLL----KLFLSKGADVNECDFYGFTAFMEA 112 (285)
T ss_dssp HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCC-CHHHHHHHHTCHHHH----HHHHHTTCCTTCBCTTCCBHHHHH
T ss_pred HHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCC-CHHHHHHHcCCHHHH----HHHHHcCCCCCccCcccCCHHHHH
Confidence 455555666654 33344445544432 111 223333445555433 3344455443321 111234444
Q ss_pred HhCCChHHHHHHHHHhhcCCHh-------------HHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH---HHHHHHH
Q 004114 456 SECDSMDDAFSVFSNMTERDLT-------------SWDTMITGFAKNGLGEDAVDIFSQFKQA-GLKPDD---QIFIGVF 518 (773)
Q Consensus 456 ~k~G~l~eA~~lf~~M~~~d~~-------------tyn~LI~ay~~~G~~deAl~Lf~eM~~~-Gv~Pd~---~Ty~~LL 518 (773)
++.|+.+-+..+++.-...+.. -++ .+...+..|..+-+..+ .+. |..++. .-.+.|.
T Consensus 113 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~L----l~~~~~~~~~~~~~g~t~l~ 187 (285)
T 1wdy_A 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDAAEKGHVEVLKIL----LDEMGADVNACDNMGRNALI 187 (285)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHHHHHHTCHHHHHHH----HHTSCCCTTCCCTTSCCHHH
T ss_pred HHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHHHHHcCCHHHHHHH----HHhcCCCCCccCCCCCCHHH
Confidence 5566666666666543322111 112 23333345554433333 332 433322 1223333
Q ss_pred HHHHcCCChHHHHHHHHHHHHhcCCCCCcch--hhhHHHHHHhCCCHHHHHHHHHhCC
Q 004114 519 SACSALGDVVEGMLHFESMSKDYGIVPSMKH--YVSIVDMLGSTGYLDEALEFIEKMP 574 (773)
Q Consensus 519 ~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~t--yn~LI~~y~r~G~l~eA~~lf~~M~ 574 (773)
.++ ..+......++++.+.+. |..++... -.+.+...++.|..+-+..+++..+
T Consensus 188 ~a~-~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g 243 (285)
T 1wdy_A 188 HAL-LSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243 (285)
T ss_dssp HHH-HCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred HHH-HccccchHHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccC
Confidence 333 334433333344444333 55554321 2234455566677776666666443
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.66 E-value=15 Score=45.63 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=91.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------------------
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS------------------ 441 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~------------------ 441 (773)
.++..+.+.+..+-|.++.... .-+...--.+-.++...|+.++|.+.|.+... |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 3666677777777666654332 22443333344456677788888877754311 11
Q ss_pred -----CCCHHHHHHHHHHHHhCCChHHHHHHHHHhh----cCC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 004114 442 -----PLRVSTYNGILKMYSECDSMDDAFSVFSNMT----ERD----LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLK 508 (773)
Q Consensus 442 -----~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~----~~d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~ 508 (773)
..-..=|.-++..+-+.+..+.|.++-.... ..+ ...|..+..++...|++++|...+-.|.....+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 0112346778888888888888776654322 122 126899999999999999999999888776554
Q ss_pred CCHHHHHHHHHHHHcCCChHHH
Q 004114 509 PDDQIFIGVFSACSALGDVVEG 530 (773)
Q Consensus 509 Pd~~Ty~~LL~a~~~~G~~deA 530 (773)
...+..||..+|..+.+++-
T Consensus 971 --~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 971 --KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp --HHHHHHHHHHHHHHCCHHHH
T ss_pred --HHHHHHHHHHHHhCCChhhh
Confidence 34567777777777766543
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=76.87 E-value=12 Score=44.52 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=32.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 486 FAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 486 y~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
|...|+++-|+++-++-.. +.|+ -.||..|..+|...|+++.|+-.+..+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3446777777777766655 3455 346777777777777777777766665
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=75.56 E-value=11 Score=39.41 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhC-----CChHHHHHHHHHhh--cC--CHhHHHHHHHHHHHc-CCh
Q 004114 426 LEEAKAVHEHVERLLSPLR---VSTYNGILKMYSEC-----DSMDDAFSVFSNMT--ER--DLTSWDTMITGFAKN-GLG 492 (773)
Q Consensus 426 le~A~~l~~~m~k~G~~pd---~~tynaLI~ay~k~-----G~l~eA~~lf~~M~--~~--d~~tyn~LI~ay~~~-G~~ 492 (773)
+..|+.++++.++ +.|+ ...|..|...|.+. |+.++|++.|++.. .| +..++..+...+++. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4556666666666 4566 56888898999984 99999999999876 35 478888888888884 899
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHH
Q 004114 493 EDAVDIFSQFKQAGLK--PDDQIFIGV 517 (773)
Q Consensus 493 deAl~Lf~eM~~~Gv~--Pd~~Ty~~L 517 (773)
++|..++++.+..... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999887766 765444433
No 240
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=75.33 E-value=18 Score=37.87 Aligned_cols=81 Identities=14% Similarity=0.040 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC-CCh
Q 004114 391 VKEAIEVLGLLEKQCISVD---LPTFSQLMQACGDA-----KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC-DSM 461 (773)
Q Consensus 391 ~~eAl~lf~~M~~~Gv~Pd---~~ty~~LL~a~~~~-----g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~-G~l 461 (773)
...|..++++..+. .|+ ...|..|...|... |+.++|++.|++.++....-+..++....+.|+.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666777776664 565 56888888889885 99999999999999975432477788888999985 999
Q ss_pred HHHHHHHHHhhc
Q 004114 462 DDAFSVFSNMTE 473 (773)
Q Consensus 462 ~eA~~lf~~M~~ 473 (773)
++|.+.+++...
T Consensus 257 ~~a~~~L~kAL~ 268 (301)
T 3u64_A 257 AGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999999874
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=74.25 E-value=12 Score=40.51 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 414 SQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 414 ~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
..++.++...|+.++|...+..++... +.+-..|-.||.+|.++|+..+|+++|+.+.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334455555566666665555555442 3345556666666666666666666665543
No 242
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=73.87 E-value=55 Score=31.08 Aligned_cols=111 Identities=10% Similarity=0.008 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHH
Q 004114 408 VDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFA 487 (773)
Q Consensus 408 Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~ 487 (773)
+|..+-...+.+++..+..+....+. .+.+ .++..+-...+.++++.+..+....+.+.+..++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45555555566666655532222222 2222 3455555566666666665544444445555566666666666666
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 488 KNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 488 ~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
+.+..+ ++..+.++.. .|+...-...+.++...+.
T Consensus 107 ~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 107 QIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred HhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCC
Confidence 666533 3333333332 3455444555555555554
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.69 E-value=58 Score=35.81 Aligned_cols=182 Identities=9% Similarity=0.068 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHH----HHHHcCC
Q 004114 424 KALEEAKAVHEHVERL-----LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMIT----GFAKNGL 491 (773)
Q Consensus 424 g~le~A~~l~~~m~k~-----G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~----ay~~~G~ 491 (773)
++++.|.+.+-.+.+. .......+...++..|.+.++++...+.+.-+.++ --..-..||. .+.....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5678888877666654 23445777888999999999999987777665533 1122233333 2223333
Q ss_pred hHHHHH--HHHHHHH--CCC-CC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHh-cCCCCC---cchhhhHHHHHHh
Q 004114 492 GEDAVD--IFSQFKQ--AGL-KP---DDQIFIGVFSACSALGDVVEGMLHFESMSKD-YGIVPS---MKHYVSIVDMLGS 559 (773)
Q Consensus 492 ~deAl~--Lf~eM~~--~Gv-~P---d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~-~Gi~Pd---~~tyn~LI~~y~r 559 (773)
.+.... +...... .|. -- ....-..|...+-..|++.+|..++..+... ++.... +..|...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 332211 1111110 111 11 1223355677788899999999999987654 232221 4677788899999
Q ss_pred CCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004114 560 TGYLDEALEFIEKM-------PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 560 ~G~l~eA~~lf~~M-------~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
.+++.+|..++.++ ...|+ ...+..++..+...+++..|-+.+-.+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999998876 11222 345566667777778887775554444
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=70.78 E-value=42 Score=39.75 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=45.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCC
Q 004114 519 SACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPM 575 (773)
Q Consensus 519 ~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~ 575 (773)
.-|...|+++-|+.+..+.... .+.+-.+|..|.++|.+.|+++.|+-.+..+|.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 3456789999999998877653 333578999999999999999999999999974
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.26 E-value=18 Score=33.51 Aligned_cols=73 Identities=16% Similarity=0.288 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHH
Q 004114 492 GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIE 571 (773)
Q Consensus 492 ~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~ 571 (773)
.-+..+-+..+....+.|+.......|.||.+..++..|.++|+.++.+.| +...+|..+++ +-.-+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq---------ElkPtl~ 137 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ---------ELRPTLN 137 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH---------HHhhHHH
Confidence 345566666666778999999999999999999999999999999977644 55667887774 5566677
Q ss_pred hCCC
Q 004114 572 KMPM 575 (773)
Q Consensus 572 ~M~~ 575 (773)
++|+
T Consensus 138 ELGI 141 (152)
T 2y69_E 138 ELGI 141 (152)
T ss_dssp HHTC
T ss_pred HhCC
Confidence 7654
No 246
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=68.89 E-value=80 Score=29.87 Aligned_cols=145 Identities=11% Similarity=0.010 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSAC 521 (773)
Q Consensus 442 ~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~ 521 (773)
.++..+-...+.++++.+..+....+.+.+..++...-...+.++...+.. ++...+.++.. .+|...=...+.++
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVAL 105 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 356666677777778777755555666666677877777788888888864 34455545443 36777667777888
Q ss_pred HcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 004114 522 SALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLE 596 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e 596 (773)
+..+..+. ...+..+.. .++..+-...+.++++.|.-+....+...+. .++..+-...+.++...+..+
T Consensus 106 ~~~~~~~~-~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~ 174 (211)
T 3ltm_A 106 GQIGDERA-VEPLIKALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGGER 174 (211)
T ss_dssp HHHCCGGG-HHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCSHH
T ss_pred HHhCcHHH-HHHHHHHHh----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCchh
Confidence 88777543 333333333 3677777778888888887544444444443 577777778888888888643
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=67.88 E-value=1.3e+02 Score=31.94 Aligned_cols=151 Identities=13% Similarity=0.040 Sum_probs=99.7
Q ss_pred HHHHhcCCh---hHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHH
Q 004114 358 NNCKHEDDF---AEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKAL----EEAK 430 (773)
Q Consensus 358 ~~y~k~g~~---~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~l----e~A~ 430 (773)
......|++ =+|... +..+..-|.+.+++++|++++..--. .+.+.|.. |.|.
T Consensus 20 ~~~I~~G~y~~~YEAHQ~-----~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~ 79 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQE-----TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAV 79 (336)
T ss_dssp HHHHHHCCHHHHHHHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHH
T ss_pred HHHHhCCCCccccHHHHH-----HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHH
Confidence 444567888 778873 34478889999999999998754321 12333443 4455
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhCCChH-HHHHHHHHhhc----------CCHhHHHHHHHHHHHcCChHHHHHHH
Q 004114 431 AVHEHVERLLSPLRVSTYNGILKMYSECDSMD-DAFSVFSNMTE----------RDLTSWDTMITGFAKNGLGEDAVDIF 499 (773)
Q Consensus 431 ~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~-eA~~lf~~M~~----------~d~~tyn~LI~ay~~~G~~deAl~Lf 499 (773)
-+.+-+.+.++++|.....-|+..+.....-+ .=.++.+++.+ -|......+-..|.+.+++.+|..-|
T Consensus 80 llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 80 LLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 55566677788889888888888888776522 22333344431 26677778889999999999988877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 004114 500 SQFKQAGLKPDDQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 500 ~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
- .|-.+...+|..+|..+...+...++-.
T Consensus 160 i----lg~~~s~~~~a~mL~ew~~~~~~~e~dl 188 (336)
T 3lpz_A 160 V----LGTKESPEVLARMEYEWYKQDESHTAPL 188 (336)
T ss_dssp T----TSCTTHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred H----hcCCchHHHHHHHHHHHHHhcCCccHHH
Confidence 2 2444445678777777766655444433
No 248
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=66.47 E-value=53 Score=29.84 Aligned_cols=84 Identities=13% Similarity=0.013 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHH---HHHHHHHhhcCC-H----hHHHHHHHHHHHcCChHHH
Q 004114 424 KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDD---AFSVFSNMTERD-L----TSWDTMITGFAKNGLGEDA 495 (773)
Q Consensus 424 g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~e---A~~lf~~M~~~d-~----~tyn~LI~ay~~~G~~deA 495 (773)
..+..+++-+......|. ++..+--.+.-++.+.....+ ++.+++++.+.+ . ...-.|.-|+.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344455555555555443 455555555556666655444 666666655432 1 1223345567777777777
Q ss_pred HHHHHHHHHCCCCCC
Q 004114 496 VDIFSQFKQAGLKPD 510 (773)
Q Consensus 496 l~Lf~eM~~~Gv~Pd 510 (773)
...++.+++ +.|+
T Consensus 94 ~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHH--HCTT
T ss_pred HHHHHHHHH--hCCC
Confidence 777777766 3454
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=64.85 E-value=20 Score=31.63 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004114 391 VKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILK 453 (773)
Q Consensus 391 ~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ 453 (773)
.=++.+-+..+....+.|++....+.|+||-+..++..|.++++-++.+- .....+|..+|.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33455555666666777888888888888888888888888877766552 122334555543
No 250
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=64.51 E-value=22 Score=34.26 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=14.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISV 408 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~P 408 (773)
|...++.|+.+.+..+++.+.+.|..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 444555666666555655555555433
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=61.08 E-value=1.6e+02 Score=30.76 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=83.5
Q ss_pred HHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH
Q 004114 358 NNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKAL----EEAKAVH 433 (773)
Q Consensus 358 ~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~l----e~A~~l~ 433 (773)
..-...|++=+|... +..+..-|.+.+++++|++++..--. .+.+.|.. |.|.-+.
T Consensus 21 ~~~I~~G~yYEAhQ~-----~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQT-----LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHHHTCHHHHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhccChHHHHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHH
Confidence 344456777788873 34478888899999999988754322 13344544 4444455
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhCCChH-HHHHHHHHhh-------c---CCHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004114 434 EHVERLLSPLRVSTYNGILKMYSECDSMD-DAFSVFSNMT-------E---RDLTSWDTMITGFAKNGLGEDAVDIFSQF 502 (773)
Q Consensus 434 ~~m~k~G~~pd~~tynaLI~ay~k~G~l~-eA~~lf~~M~-------~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM 502 (773)
+-+.+.+++++.....-|+..+.....-+ .=.++.+++. . -|......+-..|.+.|++.+|..-|-
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-- 158 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-- 158 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH--
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH--
Confidence 66666788888888888887776644222 1122223322 1 155566666677777777777666552
Q ss_pred HHCCCCCCHHHHHHHHHHHHcC
Q 004114 503 KQAGLKPDDQIFIGVFSACSAL 524 (773)
Q Consensus 503 ~~~Gv~Pd~~Ty~~LL~a~~~~ 524 (773)
.|-.-|..+|..++.-+...
T Consensus 159 --~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 159 --LGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp --TSCHHHHHHHHHHHHHHHHH
T ss_pred --hCCCccHHHHHHHHHHHHHh
Confidence 11111244565555555444
No 252
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=60.45 E-value=35 Score=30.05 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 425 ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 425 ~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
.-++|..|-+.+...+. ...+--+-+..+...|++++|..+.+.+.-||++.|-+|-. .+.|..+++..-+.+|..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 46777777777766553 22222233445667888999988888888888888877654 356777777777777766
Q ss_pred CCCCCCHHHHH
Q 004114 505 AGLKPDDQIFI 515 (773)
Q Consensus 505 ~Gv~Pd~~Ty~ 515 (773)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 55 34444443
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=58.70 E-value=33 Score=30.13 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 425 ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 425 ~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
.-++|..|-+.+...+. ...+--+-+..+...|++++|..+.+.+.-||++.|-+|-. .+.|..+++..-+.+|..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 46777777777766553 22222233445667888999988888888888888877654 467888888777777776
Q ss_pred CCCCCCHHHHH
Q 004114 505 AGLKPDDQIFI 515 (773)
Q Consensus 505 ~Gv~Pd~~Ty~ 515 (773)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 34444443
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=56.87 E-value=68 Score=29.86 Aligned_cols=73 Identities=7% Similarity=0.054 Sum_probs=43.6
Q ss_pred CCcchhhhHHHHHHhCCCH---HHHHHHHHhC-CCCC-C-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHH
Q 004114 545 PSMKHYVSIVDMLGSTGYL---DEALEFIEKM-PMEP-D-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKS 617 (773)
Q Consensus 545 Pd~~tyn~LI~~y~r~G~l---~eA~~lf~~M-~~~P-d-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~ 617 (773)
|+..+-=.+.-++.+.... .++..+++++ ...| + ....-.|.-|+.+.|++++|.+..+.+.+++|++..+..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3333333334444444432 3444455444 1123 2 233335666899999999999999999999999864433
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=56.21 E-value=1.6e+02 Score=36.46 Aligned_cols=117 Identities=10% Similarity=0.038 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---------C-----------------HhHHHHHHHHHHHcCChHHHHH
Q 004114 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTER---------D-----------------LTSWDTMITGFAKNGLGEDAVD 497 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---------d-----------------~~tyn~LI~ay~~~G~~deAl~ 497 (773)
+....-.+-.+|..+|+.++|...|.+.... . ..=|.-++..|.+.+.++.|++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3333334456677888888888888765310 0 0125667777777888888777
Q ss_pred HHHHHHHCCC-CCC-H--HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCH
Q 004114 498 IFSQFKQAGL-KPD-D--QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYL 563 (773)
Q Consensus 498 Lf~eM~~~Gv-~Pd-~--~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l 563 (773)
+-..-.+..- .++ . ..|..+++++...|++++|...+-.+... .. -......||..+|..|.+
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~--r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PL--KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SS--CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HH--HHHHHHHHHHHHHhCCCh
Confidence 7665544321 111 1 14677788888888888887776665322 22 223344455555544443
No 256
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=55.67 E-value=50 Score=31.24 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=25.4
Q ss_pred cCCHhHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCC
Q 004114 473 ERDLTSWDTMITGFAKNGLG------EDAVDIFSQFKQAGLKPD 510 (773)
Q Consensus 473 ~~d~~tyn~LI~ay~~~G~~------deAl~Lf~eM~~~Gv~Pd 510 (773)
..|..+|=..|.-.-+.|+. ++..++|++... .+.|+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~ 52 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPD 52 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCcc
Confidence 34777777777777777877 677777776655 35554
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=55.63 E-value=2e+02 Score=34.85 Aligned_cols=132 Identities=11% Similarity=0.003 Sum_probs=61.1
Q ss_pred hCCChHHHHHHHHHhhcC-CH--hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHcCCChHHH
Q 004114 457 ECDSMDDAFSVFSNMTER-DL--TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFI---GVFSACSALGDVVEG 530 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~~-d~--~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~---~LL~a~~~~G~~deA 530 (773)
-.|+-+....++..+.+. +. .-.-++--|+...|+.+.+..+.+.+... -.| .+-|. ++..||+..|+....
T Consensus 502 GTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aI 579 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAV 579 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHH
T ss_pred ccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHH
Confidence 345555555555544321 11 12222333344567777777777776653 112 22332 233455666776666
Q ss_pred HHHHHHHHHhcCCCCCcchhhhHHHHHH--hCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCC
Q 004114 531 MLHFESMSKDYGIVPSMKHYVSIVDMLG--STGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHGN 594 (773)
Q Consensus 531 ~~if~~M~~~~Gi~Pd~~tyn~LI~~y~--r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G~ 594 (773)
.+++..+..+ ++..+-...+.+++ -.|..+.+.++++.+ ...|.+.--.++.-+....|.
T Consensus 580 q~LL~~~~~d----~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn 643 (963)
T 4ady_A 580 KRLLHVAVSD----SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK 643 (963)
T ss_dssp HHHHHHHHHC----SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhccC----CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC
Confidence 6677766553 22222223333333 355555555665544 123333333333334444444
No 258
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=53.58 E-value=62 Score=30.62 Aligned_cols=18 Identities=6% Similarity=0.006 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHhCCCh
Q 004114 444 RVSTYNGILKMYSECDSM 461 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~l 461 (773)
|..+|-..|+..-+.|+.
T Consensus 12 ~yd~W~~yl~llE~~g~p 29 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVP 29 (161)
T ss_dssp SHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 344455555555555555
No 259
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=53.24 E-value=1.4e+02 Score=27.71 Aligned_cols=50 Identities=4% Similarity=-0.042 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCCh
Q 004114 443 LRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLG 492 (773)
Q Consensus 443 pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~ 492 (773)
++..+-...+.++++.+..+....+.+.+..++...-...+.++.+.+..
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence 34444444455555555444444444444445555555555555555543
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=52.32 E-value=46 Score=30.62 Aligned_cols=69 Identities=7% Similarity=0.015 Sum_probs=42.9
Q ss_pred HHHHHHhCCC---HHHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcCC
Q 004114 553 IVDMLGSTGY---LDEALEFIEKM-PMEP--DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGL 621 (773)
Q Consensus 553 LI~~y~r~G~---l~eA~~lf~~M-~~~P--d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG~ 621 (773)
+.-++.+... ..++..+++++ ...| ....+-.|.-|+.+.|+++.|.+..+.+.+++|++..+......
T Consensus 46 yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 46 YAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 120 (134)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3334444443 23455555554 1123 23445566778889999999999999999999988654443333
No 261
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.36 E-value=25 Score=33.91 Aligned_cols=150 Identities=6% Similarity=-0.122 Sum_probs=81.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcC
Q 004114 416 LMQACGDAKALEEAKAVHEHVERLLSPLRVS--TYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNG 490 (773)
Q Consensus 416 LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~--tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G 490 (773)
.|...+..|+++.+..+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.-..+ |..-++.| ...+..|
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~ 90 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA-HLACEHR 90 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcC
Confidence 3455677899999999998888777655432 1223455566778888777777643332 22223333 3344567
Q ss_pred ChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcc---hhhhHHHHHHhCCCHH
Q 004114 491 LGEDAVDIFSQFKQAGLKPD---DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMK---HYVSIVDMLGSTGYLD 564 (773)
Q Consensus 491 ~~deAl~Lf~eM~~~Gv~Pd---~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~---tyn~LI~~y~r~G~l~ 564 (773)
+.+-+..+++.....++.++ ..-.+.|.. .+..|..+-...++ +. |..++.. .....+...++.|+.+
T Consensus 91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~~~~Ll----~~-g~~~~~~~~~~g~t~L~~A~~~~~~~ 164 (241)
T 1k1a_A 91 SPTCLRALLDSAAPGTLDLEARNYDGLTALHV-AVNTECQETVQLLL----ER-GADIDAVDIKSGRSPLIHAVENNSLS 164 (241)
T ss_dssp CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH-HHHHTCHHHHHHHH----HT-TCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred CHHHHHHHHHcCCCccccccccCcCCCcHHHH-HHHcCCHHHHHHHH----Hc-CCCcccccccCCCcHHHHHHHcCCHH
Confidence 76655555544321111221 122233333 33456655444333 32 5555432 2334556667788887
Q ss_pred HHHHHHHh
Q 004114 565 EALEFIEK 572 (773)
Q Consensus 565 eA~~lf~~ 572 (773)
-+.-+++.
T Consensus 165 ~v~~Ll~~ 172 (241)
T 1k1a_A 165 MVQLLLQH 172 (241)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 77666654
No 262
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=48.33 E-value=1.7e+02 Score=27.15 Aligned_cols=145 Identities=11% Similarity=-0.001 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSAC 521 (773)
Q Consensus 442 ~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~ 521 (773)
.++..+-...+.++++.+..+....+.+.+..++...-...+.+++..+..+ +...+.++.. .++...=...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3455555566666666666555555566666677777777778888887654 4444444443 36777777777888
Q ss_pred HcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 004114 522 SALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLE 596 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e 596 (773)
...+..+.... +..+.. .++..+-...+.++++.+.-+....+...+. .++..+-...+.++...|..+
T Consensus 101 ~~~~~~~~~~~-L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~~~ 169 (201)
T 3ltj_A 101 GQIGDERAVEP-LIKALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGGER 169 (201)
T ss_dssp HHHCCGGGHHH-HHHHTT----CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCSHH
T ss_pred HHhCcHHHHHH-HHHHHc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCchh
Confidence 88777543333 333322 3566677777888888887544444444444 567777777888888887644
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=48.22 E-value=49 Score=30.71 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004114 391 VKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILK 453 (773)
Q Consensus 391 ~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ 453 (773)
.=+..+-+..+....+.|++......|+||-+..++..|.++++-++.+- .+...+|..+|.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33445555555566677777777777777777777777777777666552 222334555543
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=47.23 E-value=3e+02 Score=29.67 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVD-----LPTFSQLMQACGDAKALEEAKAVHEHVERL--LSPLRVSTYNGIL 452 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd-----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~--G~~pd~~tynaLI 452 (773)
.++.-|...|++.+|+.++.++.+.=-+.| ..+|..-+..|...+++..++.++...... .+.++..+. +.|
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-a~i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-GAL 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-HHH
Confidence 478888999999999999888876411212 234556667777888888888888776554 233444332 222
Q ss_pred HH-----HH-hCCChHHHHHHHHH
Q 004114 453 KM-----YS-ECDSMDDAFSVFSN 470 (773)
Q Consensus 453 ~a-----y~-k~G~l~eA~~lf~~ 470 (773)
+. +. ..+++..|...|-+
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHH
Confidence 22 33 56777777776654
No 265
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=45.18 E-value=27 Score=34.38 Aligned_cols=82 Identities=11% Similarity=-0.078 Sum_probs=39.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLP---TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVS--TYNGILKMY 455 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~---ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~--tynaLI~ay 455 (773)
.+...++.|+++.+. .+.+.|..++.. .-.+.|...+..|+.+.+ +.+++.|..++.. ...+.+...
T Consensus 8 ~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQ----QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHcCCHHHHH----HHHHcCCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCHHHHH
Confidence 445556667655443 334455443321 112344455566776544 4444556544321 112334444
Q ss_pred HhCCChHHHHHHHHH
Q 004114 456 SECDSMDDAFSVFSN 470 (773)
Q Consensus 456 ~k~G~l~eA~~lf~~ 470 (773)
++.|..+-+..+++.
T Consensus 80 ~~~~~~~~v~~Ll~~ 94 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSK 94 (285)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHc
Confidence 556676666666654
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.52 E-value=1.2e+02 Score=33.12 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD--DQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd--~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+..+..-|.+.|+.++|.++|.+|...-..+. ...+..+|..|...+++..+..++.+.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33444444445555555555555443211111 224444555555555555555555544
No 267
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=42.93 E-value=17 Score=34.95 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=10.8
Q ss_pred HHHHHHhCCCHHHHHHHHHh
Q 004114 553 IVDMLGSTGYLDEALEFIEK 572 (773)
Q Consensus 553 LI~~y~r~G~l~eA~~lf~~ 572 (773)
.+...++.|+.+-+.-+++.
T Consensus 180 ~L~~A~~~~~~~~v~~Ll~~ 199 (240)
T 3eu9_A 180 ALHWAVLAGNTTVISLLLEA 199 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 44445556666655555544
No 268
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=42.82 E-value=66 Score=30.68 Aligned_cols=123 Identities=8% Similarity=-0.011 Sum_probs=63.8
Q ss_pred hCCCCCHHHHH--HHHHHHHhCCChHHHHHHHHHhh-----cCCH-------hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 439 LLSPLRVSTYN--GILKMYSECDSMDDAFSVFSNMT-----ERDL-------TSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 439 ~G~~pd~~tyn--aLI~ay~k~G~l~eA~~lf~~M~-----~~d~-------~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
.|+.|....|+ .-++.+...+.++.|+-+.+.+. .+++ .+...+..++...+.+..|...|++.++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45555544433 34677778888888888877654 2342 2455667788888888888888888643
Q ss_pred C-CCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCC
Q 004114 505 A-GLKPDDQ-IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPM 575 (773)
Q Consensus 505 ~-Gv~Pd~~-Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~ 575 (773)
. ..-|... +..++- ..... ........+.+.---+..+|.+.++.++|+.+++.+|.
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~----------p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSAST----------PQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHCC----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHhcCCCcccccc----ccCCC----------cccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 2 1111111 111110 00000 00011223334444567788889999999999998854
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=41.79 E-value=69 Score=33.01 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=75.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCC
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY 562 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~ 562 (773)
+..+.+.|.+++|++...+-++.. .-|...=..|+.-+|-.|+++.|..-++...+ +.|+...-..+...+.++
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a-- 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA-- 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH--
Confidence 345678899999999998888763 23455557788899999999999987777654 345432222121222211
Q ss_pred HHHHH-HHHHhC--C--CCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHHcCCCC
Q 004114 563 LDEAL-EFIEKM--P--MEPDVDVWEKLMNLCR--MHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 563 l~eA~-~lf~~M--~--~~Pd~~ty~~LI~a~~--~~G~~e~A~~~~e~m~el~p~~ 612 (773)
+.+. ++|..- | +.....-...|+.+.. ..|+.+.|..+...+.+..|..
T Consensus 78 -E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 78 -AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp -HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred -HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1111 222211 1 1112233445666554 4599999999999998887665
No 270
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.15 E-value=67 Score=29.02 Aligned_cols=63 Identities=10% Similarity=0.137 Sum_probs=39.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGL--GEDAVDIFSQFKQAGLKPD 510 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~--~deAl~Lf~eM~~~Gv~Pd 510 (773)
...+|.=|...|++++|.+.++++..| ..++..++..++-+.+. .+.+..|+..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 355677777777888888888777655 23445555556655432 3556677777766665443
No 271
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=38.65 E-value=2.6e+02 Score=26.51 Aligned_cols=58 Identities=10% Similarity=-0.003 Sum_probs=34.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQ-CISVDL-------PTFSQLMQACGDAKALEEAKAVHEHVER 438 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~-Gv~Pd~-------~ty~~LL~a~~~~g~le~A~~l~~~m~k 438 (773)
-|..+...+.++.|+-+.+.+... +..||. .++..+.+++...+.+..|...|++.++
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 455666666666666665554322 122331 2455566667777788888887777543
No 272
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.36 E-value=39 Score=33.09 Aligned_cols=55 Identities=15% Similarity=0.024 Sum_probs=29.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHH--hcCCHHHHHHHHHHH
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPT-------FSQLMQACG--DAKALEEAKAVHEHV 436 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~t-------y~~LL~a~~--~~g~le~A~~l~~~m 436 (773)
|...++.|+.+....+++.+.+.|..++... .+.|..|+. +.|..+.+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4455566777766666666666665554322 233433332 456666665555543
No 273
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.35 E-value=1.4e+02 Score=29.98 Aligned_cols=90 Identities=12% Similarity=0.085 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004114 378 TLEQLDGLVKEGKVKEAIEVLGLLEKQ--CISV----DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGI 451 (773)
Q Consensus 378 ~~~LI~a~~~~G~~~eAl~lf~~M~~~--Gv~P----d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaL 451 (773)
..+-|+.+....++++|++++++..+. ++++ +.......+..-.....-..+..+.+++ .. ..+...-...
T Consensus 21 ~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~ 97 (235)
T 2d2s_A 21 GVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSG 97 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHH
Confidence 345789999999999999999887642 2222 1112222333333323333333443333 22 3344444455
Q ss_pred HHHHHhCCChHHHHHHHHH
Q 004114 452 LKMYSECDSMDDAFSVFSN 470 (773)
Q Consensus 452 I~ay~k~G~l~eA~~lf~~ 470 (773)
+..+.+.|+-++|..+|-+
T Consensus 98 v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 98 TENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCChhHHHHHHHH
Confidence 5666666666666666644
No 274
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=36.67 E-value=5.2e+02 Score=31.37 Aligned_cols=150 Identities=9% Similarity=0.015 Sum_probs=70.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCCCCHHHHHH--HHHHHHhCCC
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACG--DAKALEEAKAVHEHVERLLSPLRVSTYNG--ILKMYSECDS 460 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~--~~g~le~A~~l~~~m~k~G~~pd~~tyna--LI~ay~k~G~ 460 (773)
++-.|+-+....++..+.+.. +..+...+.-+++ ..|+.+.+..+.+.+... ..|.+.-..+ +.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCC
Confidence 445566665566666555431 2233333333333 556777777776666553 1222222222 2334555667
Q ss_pred hHHHHHHHHHhhc-C--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh-HHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE-R--DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDV-VEGMLHFES 536 (773)
Q Consensus 461 l~eA~~lf~~M~~-~--d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~-deA~~if~~ 536 (773)
.....+++..+.+ + ++...-.+--|+...|..+.+..++..+.+.+ .|...--..+.-+....|.. .++..++..
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 6666667766653 2 22222222224444566665666665544432 33333223333333334333 455566666
Q ss_pred HHH
Q 004114 537 MSK 539 (773)
Q Consensus 537 M~~ 539 (773)
+..
T Consensus 655 L~~ 657 (963)
T 4ady_A 655 LTK 657 (963)
T ss_dssp HHT
T ss_pred Hcc
Confidence 644
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.80 E-value=2.4e+02 Score=30.52 Aligned_cols=55 Identities=5% Similarity=-0.100 Sum_probs=22.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 004114 416 LMQACGDAKALEEAKAVHEHVERL--LSPLRVSTYNGILKMYSECDSMDDAFSVFSN 470 (773)
Q Consensus 416 LL~a~~~~g~le~A~~l~~~m~k~--G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~ 470 (773)
+..-+.+.|+++.|.+++.++... +..--+.++-.+|+++...+++..|.....+
T Consensus 137 la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~k 193 (429)
T 4b4t_R 137 LGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEA 193 (429)
T ss_dssp HHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 333344444444444444444433 1111123334444444444444444444433
No 276
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.79 E-value=73 Score=30.17 Aligned_cols=176 Identities=7% Similarity=-0.041 Sum_probs=84.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPT---FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVS--TYNGILKMY 455 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~t---y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~--tynaLI~ay 455 (773)
.+...++.|+.+-+ +.+.+.|..++... -.+.|...+..|..+.+. .+++.|..++.. ...+.+...
T Consensus 45 ~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A 116 (240)
T 3eu9_A 45 LLHWAAINNRIDLV----KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV----QLMKYGADPSLIDGEGCSCIHLA 116 (240)
T ss_dssp HHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHH----HHHHcCCCCcccCCCCCCHHHHH
Confidence 45555666765433 34444444332111 113344445566665444 444555544321 112344555
Q ss_pred HhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHcCCChHH
Q 004114 456 SECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQI---FIGVFSACSALGDVVE 529 (773)
Q Consensus 456 ~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~T---y~~LL~a~~~~G~~de 529 (773)
++.|+.+-+..+++.-.. ++..-++.|..+....+ ..+..++ +.+.|..++... -.+.|...+..|.++-
T Consensus 117 ~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~~---L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 192 (240)
T 3eu9_A 117 AQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH-SVDPTRL---LLTFNVSVNLGDKYHKNTALHWAVLAGNTTV 192 (240)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC-SSTTHHH---HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHH
T ss_pred HHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC-hHHHHHH---HHhcCCCcchhhccCCCcHHHHHHHcCCHHH
Confidence 666787776666664332 23333445554444433 3333333 344454444221 1123444456677665
Q ss_pred HHHHHHHHHHhcCCCCCcchh--hhHHHHHHhCCCHHHHHHHHHhC
Q 004114 530 GMLHFESMSKDYGIVPSMKHY--VSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 530 A~~if~~M~~~~Gi~Pd~~ty--n~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+..++ +. |..++.... ..-+...++.|+.+-+.-+++..
T Consensus 193 v~~Ll----~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 193 ISLLL----EA-GANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHH----HH-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHH----Hc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 44443 32 655553321 24555667777877777766654
No 277
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=33.94 E-value=1.3e+02 Score=31.63 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=36.8
Q ss_pred CHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 562 YLDEALEFIEKM---PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 562 ~l~eA~~lf~~M---~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
+..+..++---| .+.|. .-+..+-|..+.+++++..|..+++++.++.|..
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 240 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG 240 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 334444444433 55553 4567778888999999999999999999998753
No 278
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.80 E-value=59 Score=30.39 Aligned_cols=62 Identities=10% Similarity=0.160 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCC
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGL--GEDAVDIFSQFKQAGLKP 509 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~--~deAl~Lf~eM~~~Gv~P 509 (773)
...+|.=|...|++++|.+.++++..| ..++..++..++-+.+. .+.+..|+..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 455677777777777887777777655 23445555555555322 345666666666665543
No 279
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=33.30 E-value=89 Score=29.66 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=6.5
Q ss_pred HHHHcCCHHHHHHHH
Q 004114 384 GLVKEGKVKEAIEVL 398 (773)
Q Consensus 384 a~~~~G~~~eAl~lf 398 (773)
..++.|+++....++
T Consensus 12 ~A~~~g~~~~v~~ll 26 (231)
T 3aji_A 12 NLAYSGKLDELKERI 26 (231)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 334444444444443
No 280
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=32.66 E-value=2.2e+02 Score=26.44 Aligned_cols=70 Identities=10% Similarity=-0.030 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC
Q 004114 508 KPDDQIFIGVFSACSALGD---VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD 578 (773)
Q Consensus 508 ~Pd~~Ty~~LL~a~~~~G~---~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd 578 (773)
.|+..|--.+..++.+... +.+++.+++.+.+. +-.-...-.-.|.-++.|.|++++|+++.+.+ .++|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 5666665556666666664 45678888888765 21112233335667899999999999999887 66775
No 281
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=31.84 E-value=1.9 Score=48.49 Aligned_cols=205 Identities=15% Similarity=0.154 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHhh----hhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004114 351 MMASQVLNNCKHEDDFAEASRSS----QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKAL 426 (773)
Q Consensus 351 ~~~n~LI~~y~k~g~~~~A~~v~----~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~l 426 (773)
.+|+.|-.++.+.+.+.+|.+.+ +...+.++|.+..+.|.+++-+..+.-.++. . -+...=+.|+-+|++.+++
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~-ke~~IDteLi~ayAk~~rL 132 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A-RESYVETELIFALAKTNRL 132 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-C-CSTTTTHHHHHHHHTSCSS
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-h-cccccHHHHHHHHHhhCcH
Confidence 45667777777778888887743 2233335788888888888877765433332 2 2333445778888888776
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc------------------------CCHhHHHHH
Q 004114 427 EEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE------------------------RDLTSWDTM 482 (773)
Q Consensus 427 e~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~------------------------~d~~tyn~L 482 (773)
.+-.+++. .|++.-...+-+-|...|.++.|.-+|..+.. .++.||--+
T Consensus 133 ~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV 205 (624)
T 3lvg_A 133 AELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV 205 (624)
T ss_dssp STTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHH
T ss_pred HHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 55433321 24444445566666666777777666665531 145566665
Q ss_pred HHHHHHc------------------------------CChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCCChHHHH
Q 004114 483 ITGFAKN------------------------------GLGEDAVDIFSQFKQAGL-KPDDQIFIGVFSACSALGDVVEGM 531 (773)
Q Consensus 483 I~ay~~~------------------------------G~~deAl~Lf~eM~~~Gv-~Pd~~Ty~~LL~a~~~~G~~deA~ 531 (773)
-.+|... |.+++-+.|++.-. |+ +....+|+-|--.|++- +.++.+
T Consensus 206 ~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeKlm 282 (624)
T 3lvg_A 206 CFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQKMR 282 (624)
T ss_dssp THHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHH
T ss_pred HHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHH
Confidence 5555544 55555555555433 22 35566777777777665 455555
Q ss_pred HHHHHHHHhcCCCC------CcchhhhHHHHHHhCCCHHHHH
Q 004114 532 LHFESMSKDYGIVP------SMKHYVSIVDMLGSTGYLDEAL 567 (773)
Q Consensus 532 ~if~~M~~~~Gi~P------d~~tyn~LI~~y~r~G~l~eA~ 567 (773)
++++..-.+..++- ....|.-|+-.|++-..+|.|.
T Consensus 283 EHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 283 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 55543322222221 2456777777777777777654
No 282
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=31.05 E-value=1.7e+02 Score=24.39 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHH
Q 004114 430 KAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDA 495 (773)
Q Consensus 430 ~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deA 495 (773)
..++..+.+.|+- +..-+..+.. .....+.|.++++.+..++..+|..++.++...+...-|
T Consensus 25 ~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 25 SYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 3456666666654 3333333332 246677888888888888888888888888877754443
No 283
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=30.91 E-value=1.4e+02 Score=27.35 Aligned_cols=70 Identities=11% Similarity=0.010 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHhcCCCC--CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC
Q 004114 506 GLKPDDQIFIGVFSACSALGD---VVEGMLHFESMSKDYGIVP--SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD 578 (773)
Q Consensus 506 Gv~Pd~~Ty~~LL~a~~~~G~---~deA~~if~~M~~~~Gi~P--d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd 578 (773)
+-.|+..|--.+..++.+... +.+|+.+++.+.+. + | .....--|.-++.|.|++++|.+..+.+ .++|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 344565555555556666554 45678888887765 3 3 2344445677888999999999999887 66776
No 284
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.30 E-value=63 Score=29.96 Aligned_cols=17 Identities=0% Similarity=-0.193 Sum_probs=8.8
Q ss_pred HHHHhCCChHHHHHHHH
Q 004114 453 KMYSECDSMDDAFSVFS 469 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~ 469 (773)
...+..|+.+-+..+++
T Consensus 77 ~~A~~~~~~~~~~~Ll~ 93 (201)
T 3hra_A 77 LYAGAQGRTEILAYMLK 93 (201)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 33444566655555553
No 285
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=30.26 E-value=5.3e+02 Score=27.53 Aligned_cols=152 Identities=10% Similarity=0.035 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHHhC----CCCCHH--HHHHHHHHHHhCCChHHHHHHHHHhhcC-CHhHHHH
Q 004114 412 TFSQLMQACGDAKA---LEEAKAVHEHVERLL----SPLRVS--TYNGILKMYSECDSMDDAFSVFSNMTER-DLTSWDT 481 (773)
Q Consensus 412 ty~~LL~a~~~~g~---le~A~~l~~~m~k~G----~~pd~~--tynaLI~ay~k~G~l~eA~~lf~~M~~~-d~~tyn~ 481 (773)
.-..++...|..|. +++|.++|+.....+ ++||.. +|...+ + ..++-..+++..... +..--..
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~----~--~~~~~~~l~~~y~~s~~~~ek~~ 272 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA----Q--STEGWDFLYSKYQFSLSSTEKSQ 272 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHT----T--SHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeee----C--CHHHHHHHHHHHhcCCCHHHHHH
Confidence 34456777777776 677888888777642 566643 222221 1 233344555555433 4555667
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcC-CChHHHHHH----HHHHHHhcCCCCCcchhhhHHH
Q 004114 482 MITGFAKNGLGEDAVDIFSQFKQAGL-KPDDQIFIGVFSACSAL-GDVVEGMLH----FESMSKDYGIVPSMKHYVSIVD 555 (773)
Q Consensus 482 LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd~~Ty~~LL~a~~~~-G~~deA~~i----f~~M~~~~Gi~Pd~~tyn~LI~ 555 (773)
++.+++...+.+...++++......+ ++-... .++.+.+.. -..+.|.++ ++.+.+.++ +.......+|.
T Consensus 273 ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~--~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~--~~~~~~~~~i~ 348 (419)
T 3rjo_A 273 IEFALCRTQNKEKLQWLLDESFKGDKIKTQEFP--QILTLIGRNPVGYPLAWQFLRKNWNKLVQKFE--LGSSSIAHMVM 348 (419)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHH--HHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHH--HHHHHHhcCcchHHHHHHHHHHHHHHHHHHhC--cCchhHHHHHH
Confidence 88888888888887788877766553 443322 223333332 222333333 344445443 23344555555
Q ss_pred HHHhC----CCHHHHHHHHHhC
Q 004114 556 MLGST----GYLDEALEFIEKM 573 (773)
Q Consensus 556 ~y~r~----G~l~eA~~lf~~M 573 (773)
..+.. .++++..++|+.-
T Consensus 349 ~~~~~~~t~~~l~e~~~Ff~~~ 370 (419)
T 3rjo_A 349 GTTNQFSTRTRLEEVKGFFSSL 370 (419)
T ss_dssp HTTTTCCSHHHHHHHHHHHHTT
T ss_pred HHhhcCCCHHHHHHHHHHHHhC
Confidence 44332 3455566666654
No 286
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=29.47 E-value=7.1e+02 Score=28.75 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=12.3
Q ss_pred HhCCCHHHHHHHHHhCCCCC
Q 004114 558 GSTGYLDEALEFIEKMPMEP 577 (773)
Q Consensus 558 ~r~G~l~eA~~lf~~M~~~P 577 (773)
...|+++.|++.++++++-|
T Consensus 549 ~~~g~~~~AL~~i~~L~llP 568 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLP 568 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSC
T ss_pred HHcCCHHHHHHHHHhCCCCC
Confidence 45666666666666665555
No 287
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.99 E-value=65 Score=33.41 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=8.8
Q ss_pred HHHHhCCChHHHHHHHHH
Q 004114 453 KMYSECDSMDDAFSVFSN 470 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~ 470 (773)
...+..|+.+-+..+++.
T Consensus 89 ~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 333445555555555544
No 288
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.89 E-value=3.3e+02 Score=27.79 Aligned_cols=85 Identities=14% Similarity=-0.031 Sum_probs=44.8
Q ss_pred HHHHHHHhcCChhHHHHhhhhccHH--------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004114 355 QVLNNCKHEDDFAEASRSSQNNGTL--------EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKAL 426 (773)
Q Consensus 355 ~LI~~y~k~g~~~~A~~v~~~~~~~--------~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~l 426 (773)
+.|...+..|+++.+..++....-. ..|...+..|+.+-+ +.+.+.|..++...-.+.|...+..|..
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~ 97 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTA----KYLASVGEVHSLWHGQKPIHLAVMANKT 97 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHH----HHHHHHCCCCCCBTTBCHHHHHHHTTCH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHH----HHHHHCCCCccccCCCCHHHHHHHcCCH
Confidence 3344455567776666654221100 145556667776544 3344445444432222344455677888
Q ss_pred HHHHHHHHHHHHhCCCC
Q 004114 427 EEAKAVHEHVERLLSPL 443 (773)
Q Consensus 427 e~A~~l~~~m~k~G~~p 443 (773)
+.+..+++.....|..+
T Consensus 98 ~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 98 DLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHhccccCCCH
Confidence 88777777665555543
No 289
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=28.43 E-value=7.1e+02 Score=28.41 Aligned_cols=247 Identities=11% Similarity=0.014 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHhhhhcc-----HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004114 351 MMASQVLNNCKHEDDFAEASRSSQNNG-----TLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKA 425 (773)
Q Consensus 351 ~~~n~LI~~y~k~g~~~~A~~v~~~~~-----~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~ 425 (773)
.+-..-+..+++.+++.....++.... ......+....|+..+|.....++-..|- .....+..|+..+.+.|.
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCC
Confidence 344555666777777777766433111 11255666677777777776666655542 223345666666665554
Q ss_pred HHH--HHHHHHHHHHhC-----------CCCCH-HHHHHHHHHHHhCCChHHHHHHHHHhhcCCHh---HHHHHHHHHHH
Q 004114 426 LEE--AKAVHEHVERLL-----------SPLRV-STYNGILKMYSECDSMDDAFSVFSNMTERDLT---SWDTMITGFAK 488 (773)
Q Consensus 426 le~--A~~l~~~m~k~G-----------~~pd~-~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~---tyn~LI~ay~~ 488 (773)
+.. ...=+..+...| +.++. .....++..+.+- ..+....... .++.. .+...+.-+++
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHHHHh
Confidence 322 222222222222 11111 1112222222211 1122222111 11111 11222333444
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHH
Q 004114 489 NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFS----ACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564 (773)
Q Consensus 489 ~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~----a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~ 564 (773)
. +.+.|..+|....... ..+......+-. .....+...++...+...... ..+.....-++....+.|+++
T Consensus 228 ~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 228 Q-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp H-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHH
T ss_pred c-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHH
Confidence 3 6788999998886543 223333322222 223334345566666654332 233333334444455779999
Q ss_pred HHHHHHHhCCCCC-C-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 565 EALEFIEKMPMEP-D-VDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 565 eA~~lf~~M~~~P-d-~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
.|...|+.|+-.+ + ..-.--+-.++...|+.+.|..+++.+.+
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999995332 2 22233455577788998888888777654
No 290
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=28.15 E-value=93 Score=32.04 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=26.1
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
..+.|.+++|+.....-.+. -+-|...-..|+..||-.|++++|.+-++..
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33555566655544444333 2334455555555566666666555554443
No 291
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.40 E-value=1.2e+02 Score=30.30 Aligned_cols=52 Identities=8% Similarity=0.052 Sum_probs=23.9
Q ss_pred hHHHHHHhCCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 552 SIVDMLGSTGYLDEALEFIEKMPMEPDV-DVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M~~~Pd~-~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
+.+...+..|..+-+..+++.-....+. .-++ .+...+..|+.+.++.+++.
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLS-CIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHH-HHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccccccCCcc-HHHHHHHcChHHHHHHHHHc
Confidence 4444555566665555555443211222 2222 33333455666555544444
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=27.33 E-value=3.9e+02 Score=26.08 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHh
Q 004114 423 AKALEEAKAVHEHVERLLSPLR-VSTYNGILKMYSECDSMDDAFSVFSNMTERDLT 477 (773)
Q Consensus 423 ~g~le~A~~l~~~m~k~G~~pd-~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~ 477 (773)
......+..+|..|...|+-.. +..|-+....+-..|++.+|.+||..-.+....
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3447788888888888866433 556777777778888888888888766544433
No 293
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.50 E-value=1.1e+02 Score=26.12 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=27.6
Q ss_pred CChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHH
Q 004114 459 DSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVD 497 (773)
Q Consensus 459 G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~ 497 (773)
...+.|.++++.++.++..+|.+++.++...|...-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 456777777777777777777778877776666555443
No 294
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=26.14 E-value=85 Score=31.56 Aligned_cols=207 Identities=9% Similarity=-0.055 Sum_probs=97.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHhCC
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVS--TYNGILKMYSECD 459 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~--tynaLI~ay~k~G 459 (773)
+...+..|+.+-+..+ .+.|..++...-.+.|...+..|+++.+.. +++.|..++.. ...+.+...+..|
T Consensus 35 L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 35 SYYAIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp HHHHHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcHHHHHHHcC
Confidence 4445556665544333 334433322211234445566677665444 44556554421 1123344556678
Q ss_pred ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHcCCChHHHHHHH
Q 004114 460 SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DD-QIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 460 ~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~-~Ty~~LL~a~~~~G~~deA~~if 534 (773)
+++-+..+++.-.. ++..-|.+.+...+..|..+-+ +.+.+.|..+ +. .-.+. |...+..|..+-+..++
T Consensus 107 ~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 107 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSC-IHITIKNGHVDMMILLL 181 (285)
T ss_dssp CHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHH-HHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccH-HHHHHHcChHHHHHHHH
Confidence 88777777765332 2333334445555566765443 3344445433 11 22333 44445667777666555
Q ss_pred HHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 535 ESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 535 ~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+.- .+.. ..+..-.+..+..-++.|+.+-+.-+++ .+..++.... .+ +..|+.+.++.+++.=.+..
T Consensus 182 ~~g-ad~n-~~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~----~a-~~~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 182 DYM-TSTN-TNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSANL----EN-VLLDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp HHH-HHTC-TTCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTTG----GG-GTTTCHHHHHHHHHHHHHHT
T ss_pred HcC-CCCC-cccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCh----hh-hhcCCHHHHHHHHHcCCCCC
Confidence 432 2211 1222333444455556677655444443 3444443321 11 33566655555544433333
No 295
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.30 E-value=6.2e+02 Score=30.33 Aligned_cols=88 Identities=7% Similarity=-0.118 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-CHhHHHHHHHH
Q 004114 414 SQLMQACGDAKA---LEEAKAVHEHVERL----LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER-DLTSWDTMITG 485 (773)
Q Consensus 414 ~~LL~a~~~~g~---le~A~~l~~~m~k~----G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~-d~~tyn~LI~a 485 (773)
..++...|..|. ++.|.+.|+..... .++||.. ..+...-.+.|..++-..+++..... +..--..++.+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~~~~ek~~ll~a 767 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSA 767 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 345666666665 45666677665543 1445532 22222233445555555555555533 33334556666
Q ss_pred HHHcCChHHHHHHHHHHH
Q 004114 486 FAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 486 y~~~G~~deAl~Lf~eM~ 503 (773)
++...+.+...++++...
T Consensus 768 L~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 768 LACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HTTCCCHHHHHHHHHHTT
T ss_pred hCCCCCHHHHHHHHHHHh
Confidence 666666555555555443
No 296
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.90 E-value=76 Score=29.41 Aligned_cols=122 Identities=13% Similarity=0.101 Sum_probs=56.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLP---TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVS--TYNGILKMY 455 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~---ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~--tynaLI~ay 455 (773)
.+...++.|+.+ +++.+.+.|..++.. ..+ .|...+..|..+.+..+++. .+..++.. ...+.+...
T Consensus 42 ~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A 113 (201)
T 3hra_A 42 PLNIAVHNNDIE----IAKALIDRGADINLQNSISDS-PYLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGGNALIPA 113 (201)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSCCSHHHH
T ss_pred HHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhc---cCcccccccCCCCcHHHHH
Confidence 455556677754 444455566655432 222 34444566777666555532 23222211 111233445
Q ss_pred HhCCChHHHHHHHHHh-hc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004114 456 SECDSMDDAFSVFSNM-TE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD 510 (773)
Q Consensus 456 ~k~G~l~eA~~lf~~M-~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd 510 (773)
++.|+++-+..+++.- .. +|..-++.|..+.........-.++++.+.+.|..|+
T Consensus 114 ~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 5567776666666654 11 2333333333333222212223445555555555444
No 297
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=23.74 E-value=83 Score=29.74 Aligned_cols=20 Identities=15% Similarity=-0.041 Sum_probs=10.6
Q ss_pred HHHHHHhCCCHHHHHHHHHh
Q 004114 553 IVDMLGSTGYLDEALEFIEK 572 (773)
Q Consensus 553 LI~~y~r~G~l~eA~~lf~~ 572 (773)
.+...++.|+.+-+.-+++.
T Consensus 143 ~L~~A~~~~~~~~v~~Ll~~ 162 (228)
T 2dzn_A 143 PLHRAASVGSLKLIELLCGL 162 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHhc
Confidence 34444556666655555543
No 298
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.56 E-value=72 Score=30.50 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=36.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHH
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLP---TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVS--TYNGILKMYS 456 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~---ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~--tynaLI~ay~ 456 (773)
+...++.|+.+ +++.+.+.|..++.. -+ +.|...+..|+++.++.+ ++.|..++.. ...+.+...+
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAVKYL----IKAGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCC-CHHHHHHHTTCHHHHHHH----HTTTCCCCCCCTTSCCHHHHHH
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCC-CHHHHHHHhCCHHHHHHH----HhCCCCCCCCCCCCCcHHHHHH
Confidence 44445556654 333444455444321 12 233334455666544433 3445433221 1122344455
Q ss_pred hCCChHHHHHHHHH
Q 004114 457 ECDSMDDAFSVFSN 470 (773)
Q Consensus 457 k~G~l~eA~~lf~~ 470 (773)
..|+.+-+..+++.
T Consensus 86 ~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 86 KKGHYEVVQYLLSN 99 (237)
T ss_dssp HTTCHHHHHHHHTT
T ss_pred HcCCHHHHHHHHhC
Confidence 56776666666654
No 299
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.26 E-value=1.1e+02 Score=32.51 Aligned_cols=219 Identities=12% Similarity=0.036 Sum_probs=96.6
Q ss_pred hHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhHHHHhhhhccH--------HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004114 335 PNEGQYQSYSGNIQNGMM--ASQVLNNCKHEDDFAEASRSSQNNGT--------LEQLDGLVKEGKVKEAIEVLGLLEKQ 404 (773)
Q Consensus 335 ~~~~~~m~~~gl~pd~~~--~n~LI~~y~k~g~~~~A~~v~~~~~~--------~~LI~a~~~~G~~~eAl~lf~~M~~~ 404 (773)
.++..++++.|..++... ....+...+..|+++-+..++....- ...+...++.|+.+-+ +.+.+.
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ 102 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV----KLLLEN 102 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHH----HHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHH----HHHHhC
Confidence 445666666666554321 12344555566666666654321110 0145555566665433 333344
Q ss_pred CCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHh
Q 004114 405 CISVDLPT--FSQLMQACGDAKALEEAKAVHEHVERLLSPLRV--STYNGILKMYSECDSMDDAFSVFSNMTER---DLT 477 (773)
Q Consensus 405 Gv~Pd~~t--y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~--~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~ 477 (773)
|..|+... -.+.|...+..|.++.+..+++ .+..++. ....+.+...++.|+++-+..+++.-..+ +..
T Consensus 103 ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~ 178 (437)
T 1n11_A 103 NANPNLATTAGHTPLHIAAREGHVETVLALLE----KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178 (437)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS
T ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Confidence 44433211 1123334455666665555443 3322211 01112344455667777666666543322 111
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcc--hhhh
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ---IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMK--HYVS 552 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~---Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~--tyn~ 552 (773)
-++. +...+..|+.+ +++.+.+.|..|+.. -++. |...+..|.++-+..+++ +|..++.. .-..
T Consensus 179 g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~-----~g~~~~~~~~~g~t 247 (437)
T 1n11_A 179 GLTP-LHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVARSLLQ-----YGGSANAESVQGVT 247 (437)
T ss_dssp CCCH-HHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTCCC
T ss_pred CCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHHHH-----cCCCCCCCCCCCCC
Confidence 2222 23334455543 333344445444322 1222 333445666655444432 24333321 1123
Q ss_pred HHHHHHhCCCHHHHHHHHHh
Q 004114 553 IVDMLGSTGYLDEALEFIEK 572 (773)
Q Consensus 553 LI~~y~r~G~l~eA~~lf~~ 572 (773)
.+...++.|..+-+..+++.
T Consensus 248 ~L~~A~~~g~~~~v~~Ll~~ 267 (437)
T 1n11_A 248 PLHLAAQEGHAEMVALLLSK 267 (437)
T ss_dssp HHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHhc
Confidence 34445566776666555543
No 300
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.91 E-value=92 Score=27.52 Aligned_cols=14 Identities=7% Similarity=-0.164 Sum_probs=6.3
Q ss_pred HhCCCHHHHHHHHH
Q 004114 558 GSTGYLDEALEFIE 571 (773)
Q Consensus 558 ~r~G~l~eA~~lf~ 571 (773)
++.|+.+-+.-+++
T Consensus 109 ~~~~~~~~v~~Ll~ 122 (156)
T 1bd8_A 109 VQEGHTAVVSFLAA 122 (156)
T ss_dssp HHHTCHHHHHHHHT
T ss_pred HHhChHHHHHHHHh
Confidence 34445444444443
No 301
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=20.40 E-value=4.6e+02 Score=23.52 Aligned_cols=24 Identities=4% Similarity=0.122 Sum_probs=10.5
Q ss_pred chhhhHHHHHHhCCCHHHHHHHHH
Q 004114 548 KHYVSIVDMLGSTGYLDEALEFIE 571 (773)
Q Consensus 548 ~tyn~LI~~y~r~G~l~eA~~lf~ 571 (773)
.+|.-++.++.+...+-+++..|+
T Consensus 157 i~~~Ef~~~~~~~~~~~~~l~~~d 180 (183)
T 1s6c_A 157 VTLDEFLESXQEDDNIMRSLQLFQ 180 (183)
T ss_dssp ECHHHHHHHTTSCCHHHHHHHHHH
T ss_pred EeHHHHHHHHhcChHHHHHHHHhh
Confidence 344444444444444444444443
No 302
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.35 E-value=2.7e+02 Score=29.69 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCC---HhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTERD---LTSWDTMITGFAKNGL--GEDAVDIFSQFKQAGLKPDDQI 513 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~~d---~~tyn~LI~ay~~~G~--~deAl~Lf~eM~~~Gv~Pd~~T 513 (773)
....+|.=|...|++++|.+.++++..|. .++..++..++-+.+. .+.+..|+..+...|+-+....
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 35777888888888888888888887663 3455566666655433 3557777777777776544433
No 303
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.25 E-value=2e+02 Score=27.08 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=6.4
Q ss_pred HHcCChhHHHHHHH
Q 004114 590 RMHGNLELGDRCAE 603 (773)
Q Consensus 590 ~~~G~~e~A~~~~e 603 (773)
+..|+.+.++.+++
T Consensus 205 ~~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 205 GVEGNIVMFQHLMQ 218 (232)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455554444433
Done!