Query 004116
Match_columns 773
No_of_seqs 244 out of 716
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:47:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fq3_A Transcription regulator 100.0 3.5E-43 1.2E-47 319.7 9.7 96 179-275 9-104 (104)
2 2dce_A KIAA1915 protein; swirm 100.0 4.1E-42 1.4E-46 316.6 9.6 96 179-276 11-108 (111)
3 2yus_A SWI/SNF-related matrix- 99.6 5.5E-15 1.9E-19 128.7 9.0 57 401-457 16-72 (79)
4 2elk_A SPCC24B10.08C protein; 99.3 3.7E-12 1.3E-16 104.4 7.0 49 402-450 8-58 (58)
5 1x41_A Transcriptional adaptor 99.2 3.5E-11 1.2E-15 99.1 7.2 51 401-451 6-57 (60)
6 1wgx_A KIAA1903 protein; MYB D 98.9 9.3E-10 3.2E-14 94.4 6.6 47 402-448 7-57 (73)
7 2cqr_A RSGI RUH-043, DNAJ homo 98.9 5.6E-10 1.9E-14 95.8 5.1 61 387-452 6-70 (73)
8 2yum_A ZZZ3 protein, zinc fing 98.8 2.2E-09 7.5E-14 91.9 5.3 48 401-448 6-59 (75)
9 1guu_A C-MYB, MYB proto-oncoge 98.8 4.6E-09 1.6E-13 83.7 5.5 45 403-447 3-48 (52)
10 2d9a_A B-MYB, MYB-related prot 98.8 9.3E-09 3.2E-13 84.3 7.2 46 402-447 7-53 (60)
11 2cu7_A KIAA1915 protein; nucle 98.8 7.7E-09 2.6E-13 88.0 6.8 47 401-447 7-53 (72)
12 1gvd_A MYB proto-oncogene prot 98.8 7.3E-09 2.5E-13 82.6 5.8 45 403-447 3-48 (52)
13 1w0t_A Telomeric repeat bindin 98.7 1E-08 3.6E-13 82.2 6.0 44 404-447 3-49 (53)
14 2dim_A Cell division cycle 5-l 98.7 1.9E-08 6.7E-13 84.9 7.3 46 402-447 8-54 (70)
15 3sjm_A Telomeric repeat-bindin 98.6 4.6E-08 1.6E-12 81.8 6.0 45 403-447 11-58 (64)
16 1ity_A TRF1; helix-turn-helix, 98.6 4.6E-08 1.6E-12 82.5 6.0 46 402-447 9-57 (69)
17 2eqr_A N-COR1, N-COR, nuclear 98.6 5.5E-08 1.9E-12 80.4 6.2 44 403-446 12-55 (61)
18 2din_A Cell division cycle 5-l 98.6 6.5E-08 2.2E-12 80.8 6.5 45 402-447 8-52 (66)
19 2cjj_A Radialis; plant develop 98.6 5E-08 1.7E-12 87.4 5.4 45 403-447 8-56 (93)
20 2ltp_A Nuclear receptor corepr 97.9 1.5E-08 5.2E-13 89.9 0.0 47 401-447 14-60 (89)
21 2iw5_B Protein corest, REST co 98.5 1.7E-07 5.9E-12 95.5 6.7 46 402-447 132-177 (235)
22 2llk_A Cyclin-D-binding MYB-li 98.4 5E-07 1.7E-11 77.6 6.9 46 401-447 21-66 (73)
23 2k9n_A MYB24; R2R3 domain, DNA 98.4 3.7E-07 1.3E-11 83.0 5.8 44 404-447 2-46 (107)
24 1gv2_A C-MYB, MYB proto-oncoge 98.3 4.2E-07 1.4E-11 82.0 5.9 45 403-447 4-49 (105)
25 2k9n_A MYB24; R2R3 domain, DNA 98.3 7.2E-07 2.5E-11 81.1 6.8 46 402-447 52-97 (107)
26 3osg_A MYB21; transcription-DN 98.3 4.7E-07 1.6E-11 84.7 5.4 45 403-447 11-55 (126)
27 2yqk_A Arginine-glutamic acid 98.3 1.1E-06 3.8E-11 73.2 6.8 45 401-445 7-52 (63)
28 1gv2_A C-MYB, MYB proto-oncoge 98.3 6.5E-07 2.2E-11 80.8 5.4 46 402-447 55-100 (105)
29 1h8a_C AMV V-MYB, MYB transfor 98.3 1.2E-06 4E-11 82.0 7.2 46 402-447 26-72 (128)
30 3osg_A MYB21; transcription-DN 98.3 7.4E-07 2.5E-11 83.4 5.5 46 402-447 61-106 (126)
31 2cqq_A RSGI RUH-037, DNAJ homo 98.2 1.3E-06 4.4E-11 74.8 6.2 50 402-453 7-60 (72)
32 2xag_B REST corepressor 1; ami 98.2 9.9E-07 3.4E-11 98.9 6.8 46 402-447 379-424 (482)
33 2ckx_A NGTRF1, telomere bindin 98.2 1.2E-06 4.1E-11 76.9 5.8 43 405-447 2-49 (83)
34 3zqc_A MYB3; transcription-DNA 98.2 5.7E-07 1.9E-11 84.6 3.0 44 404-447 3-47 (131)
35 1h8a_C AMV V-MYB, MYB transfor 98.2 1.7E-06 5.8E-11 80.9 6.1 46 402-447 78-123 (128)
36 3zqc_A MYB3; transcription-DNA 98.1 2.1E-06 7.1E-11 80.7 5.9 45 403-447 54-98 (131)
37 2crg_A Metastasis associated p 98.1 4.5E-06 1.6E-10 70.9 5.7 44 403-446 8-52 (70)
38 2e5r_A Dystrobrevin alpha; ZZ 98.0 3.5E-06 1.2E-10 70.3 4.5 48 346-393 12-61 (63)
39 4eef_G F-HB80.4, designed hema 98.0 9.2E-07 3.2E-11 75.7 -0.4 43 403-445 20-66 (74)
40 4gut_A Lysine-specific histone 97.9 1.6E-05 5.6E-10 94.4 9.5 90 178-273 214-321 (776)
41 1h89_C C-MYB, MYB proto-oncoge 97.9 9.8E-06 3.4E-10 78.3 6.0 46 402-447 109-154 (159)
42 4a69_C Nuclear receptor corepr 97.9 1.2E-05 4.1E-10 72.1 5.7 43 404-446 44-86 (94)
43 2roh_A RTBP1, telomere binding 97.9 1.3E-05 4.5E-10 75.1 6.0 45 403-447 31-80 (122)
44 1h89_C C-MYB, MYB proto-oncoge 97.9 1.5E-05 5E-10 77.1 6.5 46 402-447 57-103 (159)
45 2z3y_A Lysine-specific histone 97.9 9E-06 3.1E-10 94.5 5.3 87 186-275 8-98 (662)
46 2aje_A Telomere repeat-binding 97.8 1.2E-05 4E-10 73.6 4.5 46 402-447 12-62 (105)
47 2dip_A Zinc finger SWIM domain 97.8 5.9E-06 2E-10 74.7 1.5 54 346-410 32-86 (98)
48 2juh_A Telomere binding protei 97.8 1.9E-05 6.5E-10 73.9 4.8 46 402-447 16-66 (121)
49 2fc7_A ZZZ3 protein; structure 97.7 2.6E-05 8.7E-10 68.3 4.2 52 345-396 21-77 (82)
50 1x58_A Hypothetical protein 49 97.5 0.00012 4E-09 61.0 4.8 46 402-447 7-55 (62)
51 1tot_A CREB-binding protein; z 97.0 0.00019 6.6E-09 57.6 1.1 44 345-394 6-49 (52)
52 1ign_A Protein (RAP1); RAP1,ye 96.9 0.00062 2.1E-08 70.2 4.3 46 402-447 7-58 (246)
53 2xag_A Lysine-specific histone 96.6 0.0014 4.6E-08 78.9 5.4 86 186-274 179-268 (852)
54 2ebi_A DNA binding protein GT- 96.0 0.004 1.4E-07 54.2 3.4 45 403-447 4-62 (86)
55 3hm5_A DNA methyltransferase 1 95.4 0.02 6.7E-07 51.3 5.7 44 404-447 31-79 (93)
56 1ug2_A 2610100B20RIK gene prod 94.8 0.041 1.4E-06 49.0 5.7 43 405-447 35-80 (95)
57 1ofc_X ISWI protein; nuclear p 94.7 0.021 7.1E-07 61.0 4.5 45 404-449 111-156 (304)
58 2xag_B REST corepressor 1; ami 94.7 0.0056 1.9E-07 69.0 0.0 44 404-447 190-233 (482)
59 1fex_A TRF2-interacting telome 93.8 0.049 1.7E-06 44.6 3.8 43 404-446 3-55 (59)
60 4iej_A DNA methyltransferase 1 92.1 0.22 7.6E-06 44.5 5.8 45 403-447 30-79 (93)
61 2lr8_A CAsp8-associated protei 90.1 0.046 1.6E-06 46.2 0.0 43 404-447 15-60 (70)
62 2xb0_X Chromo domain-containin 90.0 0.29 9.8E-06 51.5 5.2 31 401-431 166-197 (270)
63 4b4c_A Chromodomain-helicase-D 88.6 0.32 1.1E-05 48.4 4.3 30 403-432 134-164 (211)
64 4b4c_A Chromodomain-helicase-D 87.3 0.65 2.2E-05 46.2 5.5 39 404-442 8-51 (211)
65 2aqe_A Transcriptional adaptor 86.8 0.8 2.7E-05 40.5 5.2 70 191-269 19-88 (90)
66 2cuj_A Transcriptional adaptor 85.6 1.1 3.8E-05 41.0 5.6 70 191-269 37-106 (108)
67 2elj_A Transcriptional adapter 83.1 1.4 4.9E-05 38.7 5.0 70 191-268 19-88 (88)
68 1irz_A ARR10-B; helix-turn-hel 82.5 2.1 7.3E-05 35.8 5.5 44 403-446 7-55 (64)
69 2y9y_A Imitation switch protei 80.6 1.3 4.3E-05 48.6 4.5 44 404-448 124-169 (374)
70 1ofc_X ISWI protein; nuclear p 77.1 2 6.8E-05 45.9 4.7 46 402-447 211-272 (304)
71 2d8v_A Zinc finger FYVE domain 59.3 10 0.00035 31.9 4.3 46 345-393 8-53 (67)
72 1f5n_A Interferon-induced guan 55.6 80 0.0027 36.5 12.5 56 606-664 507-562 (592)
73 3ny3_A E3 ubiquitin-protein li 53.1 7.2 0.00025 33.4 2.5 39 351-393 7-50 (75)
74 3nis_A E3 ubiquitin-protein li 52.3 8.6 0.0003 33.5 2.9 40 350-393 10-54 (82)
75 4ham_A LMO2241 protein; struct 47.5 28 0.00097 31.8 5.9 57 213-271 11-71 (134)
76 2y9y_A Imitation switch protei 46.6 21 0.0007 39.2 5.4 45 403-447 228-288 (374)
77 3q8t_A Beclin-1; autophagy, AT 44.3 1.7E+02 0.0057 25.9 12.4 48 614-661 35-82 (96)
78 3tqn_A Transcriptional regulat 41.4 31 0.0011 30.7 5.0 55 214-270 10-65 (113)
79 2heo_A Z-DNA binding protein 1 40.1 28 0.00095 28.3 4.1 54 215-270 4-57 (67)
80 1v5n_A PDI-like hypothetical p 40.1 17 0.00057 31.8 2.9 31 345-376 47-77 (89)
81 3kyp_A Pfnaps, nucleosome asse 38.0 47 0.0016 32.9 6.1 39 619-660 4-46 (193)
82 3by6_A Predicted transcription 37.0 47 0.0016 30.2 5.6 55 214-270 12-67 (126)
83 3e7l_A Transcriptional regulat 35.7 30 0.001 27.6 3.6 27 408-434 18-44 (63)
84 2ek5_A Predicted transcription 35.0 34 0.0012 31.4 4.2 54 215-270 6-60 (129)
85 2fu4_A Ferric uptake regulatio 34.2 26 0.00088 29.0 3.0 49 222-270 18-70 (83)
86 2qdq_A Talin-1; dimerisation d 33.9 74 0.0025 25.3 5.3 32 628-660 9-40 (50)
87 1weo_A Cellulose synthase, cat 32.7 25 0.00086 31.2 2.7 31 345-376 16-51 (93)
88 3ic7_A Putative transcriptiona 31.4 26 0.00089 31.9 2.8 57 213-271 11-68 (126)
89 3oja_B Anopheles plasmodium-re 30.4 1.9E+02 0.0066 32.2 10.3 29 632-660 548-576 (597)
90 2v4h_A NF-kappa-B essential mo 29.7 3E+02 0.01 25.2 9.4 13 633-645 74-86 (110)
91 3efg_A Protein SLYX homolog; x 29.6 1.7E+02 0.0056 25.1 7.3 48 615-665 11-60 (78)
92 2olm_A Nucleoporin-like protei 29.4 49 0.0017 31.3 4.4 57 345-415 25-81 (140)
93 2o03_A Probable zinc uptake re 28.5 68 0.0023 29.1 5.1 52 219-271 9-64 (131)
94 1mzb_A Ferric uptake regulatio 28.2 57 0.002 29.8 4.6 49 222-270 19-71 (136)
95 1gmj_A ATPase inhibitor; coile 28.0 3.1E+02 0.01 24.0 9.0 53 593-649 27-79 (84)
96 2w57_A Ferric uptake regulatio 25.0 56 0.0019 30.6 3.9 49 222-270 18-70 (150)
97 2jee_A YIIU; FTSZ, septum, coi 23.9 2.4E+02 0.0082 24.5 7.3 43 620-662 8-50 (81)
98 3neu_A LIN1836 protein; struct 23.5 67 0.0023 29.0 4.1 56 213-270 13-69 (125)
99 2p57_A GTPase-activating prote 23.4 57 0.0019 31.2 3.6 60 343-414 35-94 (144)
100 3c7j_A Transcriptional regulat 23.3 39 0.0013 33.8 2.7 57 213-271 26-82 (237)
101 2key_A Putative phage integras 22.7 1.7E+02 0.0058 24.4 6.3 57 203-270 40-97 (112)
102 2xig_A Ferric uptake regulatio 22.2 88 0.003 29.2 4.7 49 221-270 27-79 (150)
103 2htj_A P fimbrial regulatory p 21.7 1E+02 0.0035 25.3 4.6 46 223-271 2-47 (81)
104 2crr_A Stromal membrane-associ 21.2 62 0.0021 30.7 3.4 96 344-455 28-129 (141)
105 3s4r_A Vimentin; alpha-helix, 20.8 3.5E+02 0.012 23.6 8.0 27 633-659 50-76 (93)
106 2e50_A Protein SET; histone ch 20.5 2.3E+02 0.0078 28.6 7.7 31 630-660 42-76 (225)
107 2xb0_X Chromo domain-containin 20.4 73 0.0025 33.4 4.0 35 404-438 4-43 (270)
No 1
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=100.00 E-value=3.5e-43 Score=319.65 Aligned_cols=96 Identities=34% Similarity=0.685 Sum_probs=84.2
Q ss_pred ceeeCCCCCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHH
Q 004116 179 RVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRI 258 (773)
Q Consensus 179 ~~ivIPsyS~WFd~~~IH~IEKr~lPEFF~gk~~~ktPeiYk~yRNfMIntYR~NP~eYLTvTacRRnL~G~dv~sI~RV 258 (773)
|+=.-|+||.||+|++||+|||++|||||+|++++|||++|++||||||++||+||.+|||+|+||++|+| ||++|+||
T Consensus 9 ~~~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~g-Dv~~i~RV 87 (104)
T 2fq3_A 9 HHGMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSG-DAAALFRL 87 (104)
T ss_dssp --------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCS-CHHHHHHH
T ss_pred cCCCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccc-cHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999 59999999
Q ss_pred HHhhhhhcccccccCCC
Q 004116 259 FRFLNHWGIINYCAAVQ 275 (773)
Q Consensus 259 H~FLE~WGLINYqvdp~ 275 (773)
|+|||+||||||||||+
T Consensus 88 h~FLe~wGLIN~~v~~~ 104 (104)
T 2fq3_A 88 HKFLTKWGLINYQVDSK 104 (104)
T ss_dssp HHHHHHTTSSSSCC---
T ss_pred HHHHHHcCeeccCCCCC
Confidence 99999999999999984
No 2
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=4.1e-42 Score=316.60 Aligned_cols=96 Identities=24% Similarity=0.370 Sum_probs=92.5
Q ss_pred ceeeCCCCCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhcc--CCCChhHHH
Q 004116 179 RVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLV--DGVSPEDLT 256 (773)
Q Consensus 179 ~~ivIPsyS~WFd~~~IH~IEKr~lPEFF~gk~~~ktPeiYk~yRNfMIntYR~NP~eYLTvTacRRnL--~G~dv~sI~ 256 (773)
.+++||+|+.||+|++||+|||++|||||+|+ ++|||++|++||||||++||+||.+|||+|+|||+| +| ||++|+
T Consensus 11 ~~~~iP~~~~wf~~~~ih~iEk~~lPefF~g~-~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~g-Dv~~i~ 88 (111)
T 2dce_A 11 EELKPPEQEIEIDRNIIQEEEKQAIPEFFEGR-QAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCG-DVNCIG 88 (111)
T ss_dssp CSCCCCSSCCCCCSSCCCHHHHTTSGGGGSCC-SSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSS-CHHHHH
T ss_pred cCCcCCCcccccCcccCCHHHHHhChHHhcCC-cccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhccccc-CHHHHH
Confidence 57999999999999999999999999999998 899999999999999999999999999999999999 58 599999
Q ss_pred HHHHhhhhhcccccccCCCC
Q 004116 257 RIFRFLNHWGIINYCAAVQS 276 (773)
Q Consensus 257 RVH~FLE~WGLINYqvdp~~ 276 (773)
|||+|||+||||||||++.+
T Consensus 89 RVh~FLe~wGLIN~~~~~~~ 108 (111)
T 2dce_A 89 RIHTYLELIGAINFGCEQAV 108 (111)
T ss_dssp HHHHHHHHHSSSSCSCTTSS
T ss_pred HHHHHHHHcCeeecCCChhh
Confidence 99999999999999999865
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.57 E-value=5.5e-15 Score=128.72 Aligned_cols=57 Identities=54% Similarity=1.117 Sum_probs=53.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhCCCCCCCcccC
Q 004116 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENV 457 (773)
Q Consensus 401 ~~~~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlqLPIED~fLe~~ 457 (773)
.....||.+|+.+||+||++||++|.+||++||+||+.||+.||++|||+|+|+.+.
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~ 72 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENS 72 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcccccccccC
Confidence 346789999999999999999999999999999999999999999999999998753
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.29 E-value=3.7e-12 Score=104.39 Aligned_cols=49 Identities=31% Similarity=0.681 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhC-CCCHHHHHHHHHhCCCC
Q 004116 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVS-TKSKAQCILHFVRLPME 450 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-gNW~~IAehVG-tKT~eECi~hFlqLPIE 450 (773)
....||.+|+.+||++|++|| +||.+||++|+ +||+.||..||.++||.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 356899999999999999999 99999999999 99999999999999874
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.18 E-value=3.5e-11 Score=99.09 Aligned_cols=51 Identities=27% Similarity=0.588 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhCCCCC
Q 004116 401 IDGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRLPMED 451 (773)
Q Consensus 401 ~~~~~WT~qEellLLEaIe~yg-gNW~~IAehVGtKT~eECi~hFlqLPIED 451 (773)
.....||.+|+.+||++|++|| ++|.+||++|++||+.||..||.++.+..
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 3457899999999999999999 89999999999999999999999987754
No 6
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.95 E-value=9.3e-10 Score=94.41 Aligned_cols=47 Identities=21% Similarity=0.483 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcC----CCHHHHHHHhCCCCHHHHHHHHHhCC
Q 004116 402 DGETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLP 448 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg----gNW~~IAehVGtKT~eECi~hFlqLP 448 (773)
....||.+|+.+|.+||..|+ ++|++||++||+||++||+.||..|+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 356899999999999999997 67999999999999999999999984
No 7
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.94 E-value=5.6e-10 Score=95.84 Aligned_cols=61 Identities=30% Similarity=0.530 Sum_probs=50.2
Q ss_pred CCceecCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC----CCHHHHHHHhCCCCHHHHHHHHHhCCCCCC
Q 004116 387 LDYIRVDPAREYGDIDGETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPMEDG 452 (773)
Q Consensus 387 ~dF~rvd~~~~~~~~~~~~WT~qEellLLEaIe~yg----gNW~~IAehVGtKT~eECi~hFlqLPIED~ 452 (773)
.++.+.+.. ......||.+|+.+|++||.+|| ++|.+||++|++||..||+.||..| ++|+
T Consensus 6 ~~~~~~~~~----~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d~ 70 (73)
T 2cqr_A 6 SGSLRKERA----RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSGP 70 (73)
T ss_dssp SSCCCCCTT----TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSSC
T ss_pred ccccccccc----ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHcc
Confidence 344454432 23567899999999999999998 7899999999999999999999977 5554
No 8
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=2.2e-09 Score=91.86 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC------CCHHHHHHHhCCCCHHHHHHHHHhCC
Q 004116 401 IDGETWSDQETFLLLEGIEMYN------DNWNEIAEHVSTKSKAQCILHFVRLP 448 (773)
Q Consensus 401 ~~~~~WT~qEellLLEaIe~yg------gNW~~IAehVGtKT~eECi~hFlqLP 448 (773)
.....||.+|+.+|+++|++|| ++|..||++|++||..||..||.++-
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYF 59 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999 79999999999999999999997653
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.80 E-value=4.6e-09 Score=83.65 Aligned_cols=45 Identities=20% Similarity=0.462 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCC-CHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 403 GETWSDQETFLLLEGIEMYND-NWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~ygg-NW~~IAehVGtKT~eECi~hFlqL 447 (773)
...||.+|+.+|+++|++||. +|..||++|++||..||..||..+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 358999999999999999995 999999999999999999999864
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.79 E-value=9.3e-09 Score=84.32 Aligned_cols=46 Identities=20% Similarity=0.540 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-gNW~~IAehVGtKT~eECi~hFlqL 447 (773)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 456899999999999999999 7999999999999999999999865
No 11
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.79 E-value=7.7e-09 Score=88.01 Aligned_cols=47 Identities=15% Similarity=0.308 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 401 ~~~~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlqL 447 (773)
.....||.+|+.+||+++++||.+|..||.+|++||..||..||..+
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQY 53 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999998866
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.77 E-value=7.3e-09 Score=82.60 Aligned_cols=45 Identities=22% Similarity=0.501 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg-gNW~~IAehVGtKT~eECi~hFlqL 447 (773)
...||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 36899999999999999999 5899999999999999999999864
No 13
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.75 E-value=1e-08 Score=82.16 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCHHHHHHHhC--CCCHHHHHHHHHhC
Q 004116 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 447 (773)
Q Consensus 404 ~~WT~qEellLLEaIe~yg-gNW~~IAehVG--tKT~eECi~hFlqL 447 (773)
..||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5799999999999999999 89999999999 99999999999864
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1.9e-08 Score=84.92 Aligned_cols=46 Identities=26% Similarity=0.567 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-gNW~~IAehVGtKT~eECi~hFlqL 447 (773)
....||.+|+.+|+++|++|| ++|..||.+|++||..||..||..+
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 356899999999999999999 8999999999999999999999875
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.60 E-value=4.6e-08 Score=81.79 Aligned_cols=45 Identities=16% Similarity=0.440 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhC--CCCHHHHHHHHHhC
Q 004116 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 447 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg-gNW~~IAehVG--tKT~eECi~hFlqL 447 (773)
...||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..|
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 45799999999999999999 79999999987 89999999999764
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.60 E-value=4.6e-08 Score=82.47 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhC--CCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-gNW~~IAehVG--tKT~eECi~hFlqL 447 (773)
....||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..+
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 356899999999999999999 89999999999 99999999999865
No 17
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=5.5e-08 Score=80.42 Aligned_cols=44 Identities=23% Similarity=0.396 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHh
Q 004116 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVR 446 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlq 446 (773)
...||.+|..+|++++.+||.+|..||.+|++||..||+.+|..
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999864
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=6.5e-08 Score=80.82 Aligned_cols=45 Identities=29% Similarity=0.544 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlqL 447 (773)
....||.+|+.+|+++++.||.+|..||+.+| ||..||..||..+
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~g-Rt~~qcr~Rw~~~ 52 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFL 52 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHhcccC-cCHHHHHHHHHHH
Confidence 45689999999999999999999999999665 9999999999975
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.56 E-value=5e-08 Score=87.42 Aligned_cols=45 Identities=24% Similarity=0.579 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHhcC----CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg----gNW~~IAehVGtKT~eECi~hFlqL 447 (773)
...||.+|+.+|++||.+|+ +.|.+||++|++||.+||+.||..|
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46899999999999999996 6799999999999999999999886
No 20
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.88 E-value=1.5e-08 Score=89.85 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 401 ~~~~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlqL 447 (773)
.....||.+|+.+||+++++||.+|..||.+|++||..||..||..+
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 34578999999999999999999999999999999999999999854
No 21
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.46 E-value=1.7e-07 Score=95.52 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlqL 447 (773)
....||++|..++++|+.+||.||..||++|||||..||+.||..+
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~ 177 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 177 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999854
No 22
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.39 E-value=5e-07 Score=77.56 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=42.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 401 ~~~~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlqL 447 (773)
.....||.+|+.+|++++++||..|..||+++ +||..+|..+|..|
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34578999999999999999999999999999 99999999999865
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.36 E-value=3.7e-07 Score=83.03 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 404 ~~WT~qEellLLEaIe~yg-gNW~~IAehVGtKT~eECi~hFlqL 447 (773)
..||.+|+.+|+++|+.|| ++|..||++|++||+.||..+|.++
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHH
Confidence 4699999999999999999 5999999999999999999999864
No 24
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.35 E-value=4.2e-07 Score=82.02 Aligned_cols=45 Identities=20% Similarity=0.485 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg-gNW~~IAehVGtKT~eECi~hFlqL 447 (773)
...||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 46899999999999999999 5899999999999999999999975
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.32 E-value=7.2e-07 Score=81.10 Aligned_cols=46 Identities=22% Similarity=0.495 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlqL 447 (773)
....||.+|+.+||+++..||.+|..||++|++||..+|..||..|
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999864
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.31 E-value=4.7e-07 Score=84.67 Aligned_cols=45 Identities=16% Similarity=0.360 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlqL 447 (773)
...||.+|+.+|+++|++||.+|..||++|++||..||..+|..+
T Consensus 11 k~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 11 KQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNY 55 (126)
T ss_dssp SCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhh
Confidence 468999999999999999999999999999999999999999974
No 27
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=1.1e-06 Score=73.17 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCHHHHHHH-hCCCCHHHHHHHHH
Q 004116 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEH-VSTKSKAQCILHFV 445 (773)
Q Consensus 401 ~~~~~WT~qEellLLEaIe~yggNW~~IAeh-VGtKT~eECi~hFl 445 (773)
.....||++|..++++||.+||-||..|+.+ |++||..||+.+|.
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 3457899999999999999999999999997 99999999999986
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.28 E-value=6.5e-07 Score=80.80 Aligned_cols=46 Identities=15% Similarity=0.418 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlqL 447 (773)
....||.+|+.+|++++..||.+|..||++|++||..+|..||..+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999754
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.27 E-value=1.2e-06 Score=81.96 Aligned_cols=46 Identities=22% Similarity=0.562 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-gNW~~IAehVGtKT~eECi~hFlqL 447 (773)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNH 72 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHh
Confidence 356899999999999999999 5899999999999999999999874
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.26 E-value=7.4e-07 Score=83.35 Aligned_cols=46 Identities=22% Similarity=0.489 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlqL 447 (773)
....||.+|+.+||+++..||.+|..||++|++||..+|..||..|
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999865
No 31
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.25 E-value=1.3e-06 Score=74.81 Aligned_cols=50 Identities=14% Similarity=0.354 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcC----CCHHHHHHHhCCCCHHHHHHHHHhCCCCCCC
Q 004116 402 DGETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPMEDGI 453 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg----gNW~~IAehVGtKT~eECi~hFlqLPIED~f 453 (773)
....||.+|..+|..||.+|+ +.|++||+++| ||.+||+.||..| .+|..
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg-Rt~~eV~~~y~~L-~~d~~ 60 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG-RSVTDVTTKAKQL-KDSVT 60 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT-SCHHHHHHHHHHH-HHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC-CCHHHHHHHHHHH-HHhcC
Confidence 356899999999999999997 56999999995 9999999999988 66643
No 32
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.23 E-value=9.9e-07 Score=98.94 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlqL 447 (773)
....||.+|.+++|+||.+||-||..||++|||||..||+.||..+
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999754
No 33
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.23 E-value=1.2e-06 Score=76.92 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHhcC-CCHHHHHHH----hCCCCHHHHHHHHHhC
Q 004116 405 TWSDQETFLLLEGIEMYN-DNWNEIAEH----VSTKSKAQCILHFVRL 447 (773)
Q Consensus 405 ~WT~qEellLLEaIe~yg-gNW~~IAeh----VGtKT~eECi~hFlqL 447 (773)
.||.+|+..|+++|++|| |+|.+|+++ +.+||..+|..+|-.+
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnl 49 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHH
Confidence 699999999999999999 799999997 7889999999999875
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.18 E-value=5.7e-07 Score=84.57 Aligned_cols=44 Identities=20% Similarity=0.402 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 404 ~~WT~qEellLLEaIe~yg-gNW~~IAehVGtKT~eECi~hFlqL 447 (773)
..||.+|+.+|+++|+.|| +||..||++|++||..||..||..+
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNH 47 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhc
Confidence 5799999999999999999 8999999999999999999999874
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.18 E-value=1.7e-06 Score=80.88 Aligned_cols=46 Identities=15% Similarity=0.426 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlqL 447 (773)
....||.+|+.+||+++..||.+|..||++|++||..+|..||..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999865
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.14 E-value=2.1e-06 Score=80.72 Aligned_cols=45 Identities=11% Similarity=0.271 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlqL 447 (773)
...||.+|+.+||+++..||.+|..||++|++||..+|..||..+
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 98 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSS 98 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999876
No 37
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.06 E-value=4.5e-06 Score=70.92 Aligned_cols=44 Identities=30% Similarity=0.467 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHH-hCCCCHHHHHHHHHh
Q 004116 403 GETWSDQETFLLLEGIEMYNDNWNEIAEH-VSTKSKAQCILHFVR 446 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~yggNW~~IAeh-VGtKT~eECi~hFlq 446 (773)
...||++|..++++||.+||-||..|+.+ |++||..||+.+|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 36899999999999999999999999995 999999999999974
No 38
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.03 E-value=3.5e-06 Score=70.29 Aligned_cols=48 Identities=25% Similarity=0.541 Sum_probs=43.9
Q ss_pred CCCCCCCCC-CCcceeecccCcCcccChhhhccCCCCCCCC-CCCceecC
Q 004116 346 NHCNYCSQP-IPAVYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIRVD 393 (773)
Q Consensus 346 ~~C~~C~~~-~~~~~y~c~kc~d~~LC~~CFs~G~~~~~hs-s~dF~rvd 393 (773)
..|+.|+.. +...+|+|..|.+++||..||..|++...|+ +|.|+++.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 679999975 9999999999999999999999999999996 78998875
No 39
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.96 E-value=9.2e-07 Score=75.66 Aligned_cols=43 Identities=21% Similarity=0.492 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHhcC----CCHHHHHHHhCCCCHHHHHHHHH
Q 004116 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFV 445 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg----gNW~~IAehVGtKT~eECi~hFl 445 (773)
...||.+|..+|-.||.+|. +.|++||+.||+||++||+.||-
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 46899999999999999997 57999999999999999999983
No 40
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=97.93 E-value=1.6e-05 Score=94.43 Aligned_cols=90 Identities=23% Similarity=0.322 Sum_probs=74.1
Q ss_pred CceeeCCCCCCCCCC------------CCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhh
Q 004116 178 SRVHVLPMHSDWFSP------------DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQG 245 (773)
Q Consensus 178 ~~~ivIPsyS~WFd~------------~~IH~IEKr~lPEFF~gk~~~ktPeiYk~yRNfMIntYR~NP~eYLTvTacRR 245 (773)
.+...+..|-.||-. +.++..|+.+||||..+ +.+|+.+||.|+.+|+.||...||...|++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~a~~~~p~~~~~~e~~~fp~~~~~------~~~yl~irn~il~~w~~np~~~l~~~~~~~ 287 (776)
T 4gut_A 214 VHVPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRD------PTMYLALRNLILALWYTNCKEALTPQKCIP 287 (776)
T ss_dssp ----CCCTTCCCBCCTTCCCCSSCBCTTSCCHHHHHHCGGGSSC------CHHHHHHHHHHHHHHHHCTTSCCCHHHHGG
T ss_pred ccccccccccccccCCCccccchhcCCCcCChHHHHhChHHHhc------CceeeeehHHHHHHHHHCCceeeeHHHhhh
Confidence 345678889999977 99999999999999754 579999999999999999999999999986
Q ss_pred ccC--CC----ChhHHHHHHHhhhhhcccccccC
Q 004116 246 LVD--GV----SPEDLTRIFRFLNHWGIINYCAA 273 (773)
Q Consensus 246 nL~--G~----dv~sI~RVH~FLE~WGLINYqvd 273 (773)
.+. +. .+..|.+|++||..+|+||+.+-
T Consensus 288 ~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 321 (776)
T 4gut_A 288 HIIVRGLVRIRCVQEVERILYFMTRKGLINTGVL 321 (776)
T ss_dssp GCCCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTC
T ss_pred hcccccccccccHHHHHHHHHHHHHhhhhhcccc
Confidence 542 11 13457999999999999999764
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.92 E-value=9.8e-06 Score=78.31 Aligned_cols=46 Identities=15% Similarity=0.418 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlqL 447 (773)
....||.+|+.+||+++..||..|..||++|++||..+|..||..+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999865
No 42
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.89 E-value=1.2e-05 Score=72.06 Aligned_cols=43 Identities=28% Similarity=0.442 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHh
Q 004116 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVR 446 (773)
Q Consensus 404 ~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlq 446 (773)
..||++|-.++.+++..||-||..||++|++||..||+.+|..
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 5799999999999999999999999999999999999999963
No 43
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.89 E-value=1.3e-05 Score=75.08 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCHHHHHHHh----CCCCHHHHHHHHHhC
Q 004116 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 447 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg-gNW~~IAehV----GtKT~eECi~hFlqL 447 (773)
...||.+|+..|++||++|| |+|.+|+++. ..||..+|..+|..+
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnl 80 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTL 80 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 46899999999999999999 7999999986 689999999999876
No 44
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.88 E-value=1.5e-05 Score=77.09 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-gNW~~IAehVGtKT~eECi~hFlqL 447 (773)
....||.+|+.+|+++++.|| .+|..||+++++||..||..+|..+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356899999999999999999 5899999999999999999999874
No 45
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=97.85 E-value=9e-06 Score=94.45 Aligned_cols=87 Identities=21% Similarity=0.398 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHh----hccCCCChhHHHHHHHh
Q 004116 186 HSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQ----GLVDGVSPEDLTRIFRF 261 (773)
Q Consensus 186 yS~WFd~~~IH~IEKr~lPEFF~gk~~~ktPeiYk~yRNfMIntYR~NP~eYLTvTacR----RnL~G~dv~sI~RVH~F 261 (773)
+++-|+.+..|+.|+.+|||+-.+ +..+...|+.+||.|+..|+.||..+||+..|- |-+.. |.-.|.+|++|
T Consensus 8 ~~~~l~~~~l~~~E~~~~~~~~~~--~~~~~~~yl~irn~~~~~w~~~~~~~~~~~~~~~~~~r~~~~-~~~~i~~~~~~ 84 (662)
T 2z3y_A 8 FQSRLPHDRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNS-DTVLVHRVHSY 84 (662)
T ss_dssp HHTTCCTTSCCHHHHHHCHHHHTS--CHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHSCTTGGG-CHHHHHHHHHH
T ss_pred HHcCCCCCCCCHHHHHHhHHHHcC--chHHHHHHHHHHHHHHHHHHHCCCcccCHHHHHHhcCCCccC-ChHHHHHHHHH
Confidence 457789999999999999999864 223557899999999999999999999999983 33333 36789999999
Q ss_pred hhhhcccccccCCC
Q 004116 262 LNHWGIINYCAAVQ 275 (773)
Q Consensus 262 LE~WGLINYqvdp~ 275 (773)
|..||+||+.+.+.
T Consensus 85 ~~~~~~~~~~~~~~ 98 (662)
T 2z3y_A 85 LERHGLINFGIYKR 98 (662)
T ss_dssp HHHTTSSSCSSCBC
T ss_pred HHHHHHHhcCCccc
Confidence 99999999877653
No 46
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.83 E-value=1.2e-05 Score=73.60 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHh----CCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-gNW~~IAehV----GtKT~eECi~hFlqL 447 (773)
....||.+|+..|++||++|| |+|.+|++.. ..||..+|..+|-.|
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnl 62 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTL 62 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 356899999999999999999 6999999976 579999999999875
No 47
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.77 E-value=5.9e-06 Score=74.70 Aligned_cols=54 Identities=30% Similarity=0.615 Sum_probs=44.9
Q ss_pred CCCCCCCC-CCCcceeecccCcCcccChhhhccCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHH
Q 004116 346 NHCNYCSQ-PIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQE 410 (773)
Q Consensus 346 ~~C~~C~~-~~~~~~y~c~kc~d~~LC~~CFs~G~~~~~hss~dF~rvd~~~~~~~~~~~~WT~qE 410 (773)
..|+.|+. ++...+|+|..|.+++||..||..|. |..|.|+++... ...|+..|
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~----H~~H~f~~i~~~-------~~~w~~~e 86 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC----HLSHTFTFREKR-------NQKWRSLE 86 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS----GGGSCEEECCSS-------SCCCEECC
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC----CCCCCeeEecCC-------CCCCcccc
Confidence 68999996 78889999999999999999999984 678999988653 23577544
No 48
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.75 E-value=1.9e-05 Score=73.88 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHh----CCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-gNW~~IAehV----GtKT~eECi~hFlqL 447 (773)
....||.+|+..|+++|++|| |+|.+|+++. ..||..+|..+|..|
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnl 66 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 66 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 356899999999999999999 6999999996 679999999999875
No 49
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.69 E-value=2.6e-05 Score=68.34 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=45.8
Q ss_pred CCCCCCCCC-CCCcceeecccCcC---cccChhhhccCCCCCCCC-CCCceecCCCC
Q 004116 345 ENHCNYCSQ-PIPAVYYQSQKEVD---VLLCPECFHEGRFVTGHS-SLDYIRVDPAR 396 (773)
Q Consensus 345 ~~~C~~C~~-~~~~~~y~c~kc~d---~~LC~~CFs~G~~~~~hs-s~dF~rvd~~~ 396 (773)
...|+.|+. ++...+|+|..|.+ ++||..||..|.+...|. .|.|+++....
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~ 77 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSS 77 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCC
Confidence 467999996 78889999999999 999999999999888895 79999987643
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.45 E-value=0.00012 Score=60.99 Aligned_cols=46 Identities=17% Similarity=0.391 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHH---HhCCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYNDNWNEIAE---HVSTKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yggNW~~IAe---hVGtKT~eECi~hFlqL 447 (773)
....||.+|+..||+||++||.+|.+|+. ++..||.-....+|-.|
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHH
Confidence 45789999999999999999999999995 56679999888888664
No 51
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=96.95 E-value=0.00019 Score=57.63 Aligned_cols=44 Identities=18% Similarity=0.437 Sum_probs=37.6
Q ss_pred CCCCCCCCCCCCcceeecccCcCcccChhhhccCCCCCCCCCCCceecCC
Q 004116 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDP 394 (773)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CFs~G~~~~~hss~dF~rvd~ 394 (773)
...|+.|++.+ ..+|+|..|.+++||..||..+. | .|.++++..
T Consensus 6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~----H-~H~m~~~~~ 49 (52)
T 1tot_A 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS----H-THKMVKWGL 49 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC----C-CSSEEEECS
T ss_pred EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC----C-CCceEEecC
Confidence 35799999986 68999999999999999999875 5 688888754
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=96.87 E-value=0.00062 Score=70.19 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCC------HHHHHHHhCCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYNDN------WNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yggN------W~~IAehVGtKT~eECi~hFlqL 447 (773)
....||.+|+.+||+.+++||.. |.+||.++.+||..+|..||..+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~ 58 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVY 58 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34689999999999999999853 99999999999999999999874
No 53
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=96.62 E-value=0.0014 Score=78.87 Aligned_cols=86 Identities=21% Similarity=0.410 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHH----hhccCCCChhHHHHHHHh
Q 004116 186 HSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDC----QGLVDGVSPEDLTRIFRF 261 (773)
Q Consensus 186 yS~WFd~~~IH~IEKr~lPEFF~gk~~~ktPeiYk~yRNfMIntYR~NP~eYLTvTac----RRnL~G~dv~sI~RVH~F 261 (773)
|.+.|..+..|..|+.+||++-.. .-..-.+|+.+||.|+-.|+.||...|+..+| +|.+.. |.-.|-+|++|
T Consensus 179 ~~~r~p~~~~~~~e~~~f~~~~~~--~~~~~~~~~~~rn~i~~~w~~~P~~a~~~~~~~~~~~r~~~~-~p~~i~~~~~~ 255 (852)
T 2xag_A 179 FQSRLPHDRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNS-DTVLVHRVHSY 255 (852)
T ss_dssp HTTTCCTTSCCHHHHHHCHHHHTS--CHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHCCTTTTS-CHHHHHHHHHH
T ss_pred HHhcCCCcccChHHHHHHHHHHHh--hhhhcCeeeEeecchhHHHhcCCHHHhhHHHHHHhCCCcccC-CcHHHHHHHHH
Confidence 667899999999999999998643 11245799999999999999999999998776 344444 46789999999
Q ss_pred hhhhcccccccCC
Q 004116 262 LNHWGIINYCAAV 274 (773)
Q Consensus 262 LE~WGLINYqvdp 274 (773)
|..||+||+.+..
T Consensus 256 ~~~~~~~~~~~~~ 268 (852)
T 2xag_A 256 LERHGLINFGIYK 268 (852)
T ss_dssp HHHTTSSSCSSCB
T ss_pred HHHHHHHhcCccc
Confidence 9999999987764
No 54
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.97 E-value=0.004 Score=54.22 Aligned_cols=45 Identities=24% Similarity=0.419 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHhcC----------CCHHHHHHHhC----CCCHHHHHHHHHhC
Q 004116 403 GETWSDQETFLLLEGIEMYN----------DNWNEIAEHVS----TKSKAQCILHFVRL 447 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg----------gNW~~IAehVG----tKT~eECi~hFlqL 447 (773)
...||.+|+++||++..... .-|+.||+.+. .+|++||..+|-.|
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35799999999999997532 37999999986 69999999999876
No 55
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=95.41 E-value=0.02 Score=51.30 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHh-----CCCCHHHHHHHHHhC
Q 004116 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHV-----STKSKAQCILHFVRL 447 (773)
Q Consensus 404 ~~WT~qEellLLEaIe~yggNW~~IAehV-----GtKT~eECi~hFlqL 447 (773)
.+||.+|+..|++.+++|+-.|--|++.. +.||-++...+|..+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999 479999999999764
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.79 E-value=0.041 Score=48.95 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHhcC---CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 405 TWSDQETFLLLEGIEMYN---DNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 405 ~WT~qEellLLEaIe~yg---gNW~~IAehVGtKT~eECi~hFlqL 447 (773)
-||.+|+..+|.+.++-| +-|..||+.+|+||++|...+|-+|
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 699999999999999987 5999999999999999999999876
No 57
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.74 E-value=0.021 Score=61.02 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhCCC
Q 004116 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRLPM 449 (773)
Q Consensus 404 ~~WT~qEellLLEaIe~yg-gNW~~IAehVGtKT~eECi~hFlqLPI 449 (773)
..||..+-..++.|+++|| ++|..||..|++||++|.. .|.+..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~-~Y~~vFw 156 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVI-EYNAVFW 156 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHH-HHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHH-HHHHHHH
Confidence 4799999999999999999 8999999999999999995 4555444
No 58
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=94.69 E-value=0.0056 Score=68.96 Aligned_cols=44 Identities=14% Similarity=0.360 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 404 ~~WT~qEellLLEaIe~yggNW~~IAehVGtKT~eECi~hFlqL 447 (773)
..||.+|..++.++|..||.||..|+++|++||..+|+.+|...
T Consensus 190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~W 233 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSW 233 (482)
T ss_dssp --------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhccc
Confidence 47999999999999999999999999999999999999998754
No 59
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=93.75 E-value=0.049 Score=44.65 Aligned_cols=43 Identities=9% Similarity=0.261 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHhc--------C-CCHHHHHH-HhCCCCHHHHHHHHHh
Q 004116 404 ETWSDQETFLLLEGIEMY--------N-DNWNEIAE-HVSTKSKAQCILHFVR 446 (773)
Q Consensus 404 ~~WT~qEellLLEaIe~y--------g-gNW~~IAe-hVGtKT~eECi~hFlq 446 (773)
..+|.+|+..|++-|..| | --|.++++ .+..+|-+.|..||++
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 469999999999999999 3 36999999 8989999999999997
No 60
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.06 E-value=0.22 Score=44.54 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHhC-----CCCHHHHHHHHHhC
Q 004116 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVS-----TKSKAQCILHFVRL 447 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~yggNW~~IAehVG-----tKT~eECi~hFlqL 447 (773)
+..||.+||..|++.+++|+-.|--|++.-. .||-|+-..+|.++
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999874 68999999999764
No 61
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=90.15 E-value=0.046 Score=46.23 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHhcC---CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004116 404 ETWSDQETFLLLEGIEMYN---DNWNEIAEHVSTKSKAQCILHFVRL 447 (773)
Q Consensus 404 ~~WT~qEellLLEaIe~yg---gNW~~IAehVGtKT~eECi~hFlqL 447 (773)
--||.+|+-.+|...++-| .-|..||+.+ +||++|...+|.+|
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 3699999999999999888 4999999999 79999999999886
No 62
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.97 E-value=0.29 Score=51.51 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=28.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC-CCHHHHHHH
Q 004116 401 IDGETWSDQETFLLLEGIEMYN-DNWNEIAEH 431 (773)
Q Consensus 401 ~~~~~WT~qEellLLEaIe~yg-gNW~~IAeh 431 (773)
..+..|+.+|+..||-||.+|| |+|+.|..-
T Consensus 166 ~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 166 NWSSNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 3567999999999999999999 999999764
No 63
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=88.58 E-value=0.32 Score=48.37 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCHHHHHHHh
Q 004116 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHV 432 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg-gNW~~IAehV 432 (773)
...||.+|+..||-||.+|| |+|+.|-.-.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 46799999999999999999 9999987653
No 64
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=87.30 E-value=0.65 Score=46.17 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHhcC---CCHHHHHHHhC--CCCHHHHHH
Q 004116 404 ETWSDQETFLLLEGIEMYN---DNWNEIAEHVS--TKSKAQCIL 442 (773)
Q Consensus 404 ~~WT~qEellLLEaIe~yg---gNW~~IAehVG--tKT~eECi~ 442 (773)
.+||..|...|+-|+.+|| +.|++|++... .||.++...
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~ 51 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR 51 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH
Confidence 5899999999999999999 78999999864 799887665
No 65
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=86.83 E-value=0.8 Score=40.51 Aligned_cols=70 Identities=16% Similarity=0.377 Sum_probs=56.6
Q ss_pred CCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccc
Q 004116 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (773)
Q Consensus 191 d~~~IH~IEKr~lPEFF~gk~~~ktPeiYk~yRNfMIntYR~NP~eYLTvTacRRnL~G~dv~sI~RVH~FLE~WGLIN 269 (773)
+.+-+|+=|++-.-.. .=.|..|+.+.+-||.-+..+- .|+.++||.... .|+.-..||+.||.+-|+|+
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~li~E~~~~g--~l~k~da~~~~k-iD~~K~~~iydf~~~~Gwi~ 88 (90)
T 2aqe_A 19 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIK-IDVNKTRKIYDFLIREGYIT 88 (90)
T ss_dssp STTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHS--CCCHHHHHTTSS-SSSHHHHHHHHHHHHTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHc-ccHHHHHHHHHHHHHcCCCC
Confidence 3457888898855333 4579999999999999885543 389999998764 47999999999999999995
No 66
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=85.61 E-value=1.1 Score=40.99 Aligned_cols=70 Identities=16% Similarity=0.381 Sum_probs=57.3
Q ss_pred CCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccc
Q 004116 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (773)
Q Consensus 191 d~~~IH~IEKr~lPEFF~gk~~~ktPeiYk~yRNfMIntYR~NP~eYLTvTacRRnL~G~dv~sI~RVH~FLE~WGLIN 269 (773)
+.+-+|+-|++-.-.. .=.|..|+.+.+-||.-+..+ . .|+.++||+... .|+.-..||+.||.+-|+|+
T Consensus 37 g~~LLs~~E~~LCs~l------rL~P~~YL~iK~~Li~E~~k~-g-~lkk~dA~~l~k-ID~~K~~rIydff~~~GWi~ 106 (108)
T 2cuj_A 37 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQ-G-GLRLAQARALIK-IDVNKTRKIYDFLIREGYIT 106 (108)
T ss_dssp TTTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHS-S-CCCHHHHHHHHT-SCHHHHHHHHHHHHTTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHc-C-CCcHHHHHHHhc-ccHHHHHHHHHHHHHcCCCC
Confidence 4568899999865433 457999999999999988543 3 399999998764 47999999999999999985
No 67
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=83.09 E-value=1.4 Score=38.72 Aligned_cols=70 Identities=17% Similarity=0.361 Sum_probs=56.7
Q ss_pred CCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhccc
Q 004116 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGII 268 (773)
Q Consensus 191 d~~~IH~IEKr~lPEFF~gk~~~ktPeiYk~yRNfMIntYR~NP~eYLTvTacRRnL~G~dv~sI~RVH~FLE~WGLI 268 (773)
+.+-+|+=|++-.-.. .=.|..|+.+.+-||.-+..+ ...|+.++||.... .|+.-..||+.||.+-|.|
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~Li~E~~k~-g~~lkk~da~~~~k-iD~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 19 DYALLSNDEQQLCIQL------KILPKPYLVLKEVMFRELLKT-GGNLSKSACRELLN-IDPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp TCSSSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHH-SSCCCHHHHHHHTT-SCHHHHHHHHHHHHHTTCC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHc-ccHHHHHHHHHHHHHcCCC
Confidence 4467888898855333 457999999999999988654 44689999998764 4799999999999999987
No 68
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=82.48 E-value=2.1 Score=35.75 Aligned_cols=44 Identities=9% Similarity=0.206 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCC---HHHHHHHhCC--CCHHHHHHHHHh
Q 004116 403 GETWSDQETFLLLEGIEMYNDN---WNEIAEHVST--KSKAQCILHFVR 446 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~yggN---W~~IAehVGt--KT~eECi~hFlq 446 (773)
.-.||.+.-..+++||+..|.+ |..|-+.++. -|.+++..|.=+
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 3579999999999999999965 8899999984 599999888644
No 69
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=80.57 E-value=1.3 Score=48.60 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCHHHHHHHhC-CCCHHHHHHHHHhCC
Q 004116 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVS-TKSKAQCILHFVRLP 448 (773)
Q Consensus 404 ~~WT~qEellLLEaIe~yg-gNW~~IAehVG-tKT~eECi~hFlqLP 448 (773)
.+||..|-..++.|.++|| +|-..||..|+ +||++|.. .|.+..
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vF 169 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAF 169 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHH
Confidence 4799999999999999999 89999999998 99999987 555543
No 70
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=77.07 E-value=2 Score=45.90 Aligned_cols=46 Identities=11% Similarity=0.252 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcC----CCHHHHHH------------HhCCCCHHHHHHHHHhC
Q 004116 402 DGETWSDQETFLLLEGIEMYN----DNWNEIAE------------HVSTKSKAQCILHFVRL 447 (773)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg----gNW~~IAe------------hVGtKT~eECi~hFlqL 447 (773)
.+..||.+|+-.||-+|.+|| |+|+.|.. ++.+||+.|+..|--.|
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 356899999999999999998 89999984 55689999988877655
No 71
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=59.30 E-value=10 Score=31.90 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCCcceeecccCcCcccChhhhccCCCCCCCCCCCceecC
Q 004116 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVD 393 (773)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CFs~G~~~~~hss~dF~rvd 393 (773)
...|..|..+. .++|..|.+-.-|..||.++..-.....|..++..
T Consensus 8 ~pWC~ICneDA---tlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y~ 53 (67)
T 2d8v_A 8 LPWCCICNEDA---TLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYH 53 (67)
T ss_dssp CSSCTTTCSCC---CEEETTTTSEEECSSHHHHHTTTSSTTTCCEECCC
T ss_pred CCeeEEeCCCC---eEEecCCCCceehHHHHHHHccchhhhccceeecc
Confidence 36799999874 48999997778999999887743333344444443
No 72
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=55.62 E-value=80 Score=36.48 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004116 606 REIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTRLG 664 (773)
Q Consensus 606 REI~rLv~~IIe~QLKKLElKLk~feELE~~le~Ere~LE~~Rq~L~~eR~~~~~~rl~ 664 (773)
++.++-....++.|-+-.+..++++.+ -|++||+++.++.+..+..++..-.+.|.
T Consensus 507 ~~~~~~~~~~~~~~~~~~~e~~~ql~~---kme~~~~~~~~e~~~~~~~~~~~~~~~~~ 562 (592)
T 1f5n_A 507 HEMQRKNEQMMEQKERSYQEHLKQLTE---KMENDRVQLLKEQERTLALKLQEQEQLLK 562 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556677777777776666555 78889988888888888877776555443
No 73
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=53.11 E-value=7.2 Score=33.39 Aligned_cols=39 Identities=23% Similarity=0.458 Sum_probs=27.2
Q ss_pred CCCCCC--cceeecccCc---CcccChhhhccCCCCCCCCCCCceecC
Q 004116 351 CSQPIP--AVYYQSQKEV---DVLLCPECFHEGRFVTGHSSLDYIRVD 393 (773)
Q Consensus 351 C~~~~~--~~~y~c~kc~---d~~LC~~CFs~G~~~~~hss~dF~rvd 393 (773)
|+.... .+.|+|..|. ...||.+||..+ .|..|+|.+..
T Consensus 7 Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~----~H~gH~~~~~~ 50 (75)
T 3ny3_A 7 CGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGS----IHRDHRYRMTT 50 (75)
T ss_dssp CCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTS----GGGGSCEEEEE
T ss_pred cCCcccCCCEEEECccCCCCCCeeEChHHCCCC----CcCCceEEEEE
Confidence 444443 3667777663 357999999875 48889998754
No 74
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=52.30 E-value=8.6 Score=33.49 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=28.1
Q ss_pred CCCCCCC--cceeecccCc---CcccChhhhccCCCCCCCCCCCceecC
Q 004116 350 YCSQPIP--AVYYQSQKEV---DVLLCPECFHEGRFVTGHSSLDYIRVD 393 (773)
Q Consensus 350 ~C~~~~~--~~~y~c~kc~---d~~LC~~CFs~G~~~~~hss~dF~rvd 393 (773)
.|+.... .+.|+|..|. ...||.+||..+ .|..|+|.+..
T Consensus 10 ~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s----~H~gH~~~~~~ 54 (82)
T 3nis_A 10 NCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPK----DHVNHHVCTDI 54 (82)
T ss_dssp CCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGG----GGTTSCEEEEE
T ss_pred CCCCcccCCCEEEEeeccCCCCCceEchhhCCCC----CcCCceEEEEE
Confidence 3555554 3677777763 467999999764 58889998754
No 75
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=47.49 E-value=28 Score=31.78 Aligned_cols=57 Identities=12% Similarity=0.322 Sum_probs=44.3
Q ss_pred CCCh---HHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 004116 213 DHTP---EKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (773)
Q Consensus 213 ~ktP---eiYk~yRNfMIntYR~NP~eYL-TvTacRRnL~G~dv~sI~RVH~FLE~WGLINYq 271 (773)
+++| ++|..+|+.|++- ++.|...| |..+.-..+ |+....+.+...-|+.-|||-..
T Consensus 11 s~~PlY~QI~~~i~~~I~~G-~l~pG~~LPser~La~~~-gVSr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 11 SQLPIYEQIVQKIKEQVVKG-VLQEGEKILSIREFASRI-GVNPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp SSSCHHHHHHHHHHHHHHHT-SSCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcC-CCCCCCCCccHHHHHHHH-CCCHHHHHHHHHHHHHCCcEEEE
Confidence 5565 7788888888876 57899999 786643333 45578999999999999999764
No 76
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=46.62 E-value=21 Score=39.19 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHhcC----CCHHHHHHHh------------CCCCHHHHHHHHHhC
Q 004116 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHV------------STKSKAQCILHFVRL 447 (773)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg----gNW~~IAehV------------GtKT~eECi~hFlqL 447 (773)
+..||.+|+-.||-+|.+|| |+|+.|-..| .+||+.|+..+.-.|
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tL 288 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTL 288 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 56899999999999999998 8999997774 479999988776655
No 77
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=44.31 E-value=1.7e+02 Score=25.88 Aligned_cols=48 Identities=10% Similarity=0.298 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004116 614 NIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVST 661 (773)
Q Consensus 614 ~IIe~QLKKLElKLk~feELE~~le~Ere~LE~~Rq~L~~eR~~~~~~ 661 (773)
..|+.+|+.++..+..++.-|..+.+|+..+.++.-.+..+|.++-.+
T Consensus 35 ~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q 82 (96)
T 3q8t_A 35 KVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQ 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999998888877554
No 78
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=41.43 E-value=31 Score=30.68 Aligned_cols=55 Identities=7% Similarity=0.027 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 004116 214 HTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 270 (773)
Q Consensus 214 ktPeiYk~yRNfMIntYR~NP~eYL-TvTacRRnL~G~dv~sI~RVH~FLE~WGLINY 270 (773)
..-++|..+|+.|++- +..|...| |..+.-+.+ |+.-..+.+...-|+..|||-.
T Consensus 10 ~~~~i~~~i~~~I~~g-~~~~G~~lPs~~~La~~~-~vSr~tvr~al~~L~~~Gli~~ 65 (113)
T 3tqn_A 10 IYQQLRDKIVEAIIDG-SYVEGEMIPSIRKISTEY-QINPLTVSKAYQSLLDDNVIEK 65 (113)
T ss_dssp HHHHHHHHHHHHHHHT-SSCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcC-CCCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEE
Confidence 3457888888888775 46799999 887754433 4457899999999999999965
No 79
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=40.14 E-value=28 Score=28.33 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 004116 215 TPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 270 (773)
Q Consensus 215 tPeiYk~yRNfMIntYR~NP~eYLTvTacRRnL~G~dv~sI~RVH~FLE~WGLINY 270 (773)
.|+.-.+.|..|+.....+ ..++|+++.-+.+ |..-.++.|+.+=|+..|+|-.
T Consensus 4 ~~~~m~~~~~~IL~~L~~~-~~~~s~~eLA~~l-glsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 4 MLSTGDNLEQKILQVLSDD-GGPVAIFQLVKKC-QVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp -----CHHHHHHHHHHHHH-CSCEEHHHHHHHH-CSCHHHHHHHHHHHHHTTSEEE
T ss_pred CcccccHHHHHHHHHHHHc-CCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEec
Confidence 3444445788999988765 3579999976655 5567899999999999999853
No 80
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=40.14 E-value=17 Score=31.80 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=27.1
Q ss_pred CCCCCCCCCCCCcceeecccCcCcccChhhhc
Q 004116 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFH 376 (773)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CFs 376 (773)
.+.|+.|+..+....|+|..| +|.|-..|..
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C-~f~lH~~Ca~ 77 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDEC-DFDLHAKCAL 77 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTT-CCCCCHHHHH
T ss_pred CeEeCCCCCcCCCcEEEcCCC-CCeEcHHhcC
Confidence 368999999988899999998 7899999974
No 81
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=37.96 E-value=47 Score=32.88 Aligned_cols=39 Identities=10% Similarity=0.304 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 004116 619 QLKRLELKLKQFAEVETLLMRECEQVEK----ARQRFATERTRIVS 660 (773)
Q Consensus 619 QLKKLElKLk~feELE~~le~Ere~LE~----~Rq~L~~eR~~~~~ 660 (773)
+|+.|+.++ ++||.-+.+|..+||+ .++-|+..|..+++
T Consensus 4 ~L~~iQ~e~---~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~ 46 (193)
T 3kyp_A 4 DFEDIQKDI---EQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQ 46 (193)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 345555543 4455556666666654 57789999999998
No 82
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=36.96 E-value=47 Score=30.19 Aligned_cols=55 Identities=11% Similarity=0.162 Sum_probs=42.8
Q ss_pred CChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 004116 214 HTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 270 (773)
Q Consensus 214 ktPeiYk~yRNfMIntYR~NP~eYL-TvTacRRnL~G~dv~sI~RVH~FLE~WGLINY 270 (773)
..-++|..+|+.|+.- ...|...| |..+.-+.+ |+....+.+...-|+..|||-.
T Consensus 12 ~~~~i~~~l~~~I~~g-~~~~G~~lPse~~La~~~-~vSr~tvr~Al~~L~~~Gli~~ 67 (126)
T 3by6_A 12 VYLQLVDRIKNEVATD-VLSANDQLPSVRETALQE-KINPNTVAKAYKELEAQKVIRT 67 (126)
T ss_dssp HHHHHHHHHHHHHHTT-SSCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEE
Confidence 3456888888888765 46799999 888864444 4457889999999999999954
No 83
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=35.73 E-value=30 Score=27.64 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCC
Q 004116 408 DQETFLLLEGIEMYNDNWNEIAEHVST 434 (773)
Q Consensus 408 ~qEellLLEaIe~yggNW~~IAehVGt 434 (773)
.-|...+.++++.++||+.++|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 457788999999999999999999994
No 84
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=35.02 E-value=34 Score=31.41 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 004116 215 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 270 (773)
Q Consensus 215 tPeiYk~yRNfMIntYR~NP~eYL-TvTacRRnL~G~dv~sI~RVH~FLE~WGLINY 270 (773)
.-++|..+|+.|++- +..|...| |..+.-+.+ |+.-..+.+...-|+..|||-.
T Consensus 6 ~~~i~~~i~~~I~~g-~l~~G~~LPse~~La~~~-gvSr~tVr~Al~~L~~~Gli~~ 60 (129)
T 2ek5_A 6 YKQIASLIEDSIVDG-TLSIDQRVPSTNELAAFH-RINPATARNGLTLLVEAGILYK 60 (129)
T ss_dssp HHHHHHHHHHHHHTT-SSCTTSCBCCHHHHHHHT-TCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEEE
Confidence 357888899988876 57899999 887754443 4457889999999999999965
No 85
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.21 E-value=26 Score=28.95 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhccccc
Q 004116 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 270 (773)
Q Consensus 222 yRNfMIntYR~NP~eYLTvTacRRnL----~G~dv~sI~RVH~FLE~WGLINY 270 (773)
-|-.|++.....+...+|+.+.-..+ .+.+..+|.|....|+..|||--
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 35567776655432689999864443 25557899999999999999975
No 86
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=33.95 E-value=74 Score=25.34 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004116 628 KQFAEVETLLMRECEQVEKARQRFATERTRIVS 660 (773)
Q Consensus 628 k~feELE~~le~Ere~LE~~Rq~L~~eR~~~~~ 660 (773)
+-++--|.+|.+|| +||..|+.|..-|..--.
T Consensus 9 qEi~Aqe~iLr~Er-ELEeAr~~La~iR~~kY~ 40 (50)
T 2qdq_A 9 QIIAAQEEMLRKER-ELEEARKKLAQIRQQQYK 40 (50)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 33445567888886 799999999988876443
No 87
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=32.69 E-value=25 Score=31.25 Aligned_cols=31 Identities=16% Similarity=0.588 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCC-----cceeecccCcCcccChhhhc
Q 004116 345 ENHCNYCSQPIP-----AVYYQSQKEVDVLLCPECFH 376 (773)
Q Consensus 345 ~~~C~~C~~~~~-----~~~y~c~kc~d~~LC~~CFs 376 (773)
...|..|+.++. .+++.|.+| .|-+|-.||.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC-~FPvCrpCyE 51 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNEC-GFPACRPCYE 51 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSS-CCCCCHHHHH
T ss_pred CCccccccCccccCCCCCEEEeeecc-CChhhHHHHH
Confidence 457999998875 388899988 5889999995
No 88
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=31.44 E-value=26 Score=31.91 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=44.5
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 004116 213 DHTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (773)
Q Consensus 213 ~ktPeiYk~yRNfMIntYR~NP~eYL-TvTacRRnL~G~dv~sI~RVH~FLE~WGLINYq 271 (773)
...-++|..+|..|++- ...|...| |..+.-+.+ |+....+.+...-|+..|||-..
T Consensus 11 ~~~~~i~~~l~~~I~~g-~~~~G~~lPs~~~La~~~-~vSr~tvr~Al~~L~~~G~i~~~ 68 (126)
T 3ic7_A 11 AIYLQIADRICDDILLG-QYEEEGRIPSVREYASIV-EVNANTVMRSYEYLQSQEVIYNK 68 (126)
T ss_dssp -CTTHHHHHHHHHHHTT-SSCBTSEECCTTTTTTCC--CCSGGGHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEEEE
Confidence 45678999999999986 57899999 887754433 44467899999999999999653
No 89
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.45 E-value=1.9e+02 Score=32.22 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004116 632 EVETLLMRECEQVEKARQRFATERTRIVS 660 (773)
Q Consensus 632 ELE~~le~Ere~LE~~Rq~L~~eR~~~~~ 660 (773)
+||+.++..++++++.+|++-..|..+-+
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 66666677777777777766665555443
No 90
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=29.71 E-value=3e+02 Score=25.18 Aligned_cols=13 Identities=15% Similarity=0.010 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 004116 633 VETLLMRECEQVE 645 (773)
Q Consensus 633 LE~~le~Ere~LE 645 (773)
+..=.+.||..=|
T Consensus 74 Y~~DF~aERadRE 86 (110)
T 2v4h_A 74 YKADFQAERHARE 86 (110)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHccchhhHH
Confidence 3334445554444
No 91
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.58 E-value=1.7e+02 Score=25.08 Aligned_cols=48 Identities=27% Similarity=0.240 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhCC
Q 004116 615 IINHQLKRLELKLKQFAEVETLLMRECEQVEKARQR--FATERTRIVSTRLGP 665 (773)
Q Consensus 615 IIe~QLKKLElKLk~feELE~~le~Ere~LE~~Rq~--L~~eR~~~~~~rl~~ 665 (773)
-++..|..||.||.|.+++=.-|. ..|-++.++ .+..+++.+..|+..
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn---~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELS---EALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999998766422222 122222222 244566778888874
No 92
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=29.36 E-value=49 Score=31.33 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=33.5
Q ss_pred CCCCCCCCCCCCcceeecccCcCcccChhhhccCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHH
Q 004116 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLL 415 (773)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CFs~G~~~~~hss~dF~rvd~~~~~~~~~~~~WT~qEellLL 415 (773)
-..|.-|+.. .+.+-+.. ..+.+|.+|-.--+..+.| .+++- ..-+.||.+|...|.
T Consensus 25 N~~CaDCg~~--~P~WaS~n-~GvfiC~~CsgiHR~LG~~---s~VrS--------l~ld~w~~~~l~~m~ 81 (140)
T 2olm_A 25 NRKCFDCDQR--GPTYVNMT-VGSFVCTSCSGSLRGLNPP---HRVKS--------ISMTTFTQQEIEFLQ 81 (140)
T ss_dssp GGSCTTTCSS--CCCEEETT-TTEEECHHHHHHHTTSSSC---CCEEE--------TTTCCCCHHHHHHHH
T ss_pred CCcCCCCCCC--CCCceeec-cCEEEchhccchhccCCCc---ceeee--------cCCCCCCHHHHHHHH
Confidence 4579989875 44454443 3678999998644433223 34431 122579997765554
No 93
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.54 E-value=68 Score=29.13 Aligned_cols=52 Identities=8% Similarity=0.083 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhcccccc
Q 004116 219 YMECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (773)
Q Consensus 219 Yk~yRNfMIntYR~NP~eYLTvTacRRnL----~G~dv~sI~RVH~FLE~WGLINYq 271 (773)
.-.-|-.|++..... ...+|+.+.-..| .+.+..++.|...+|+..|||.=-
T Consensus 9 ~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 9 STRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEE
T ss_pred CCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEE
Confidence 445678888887654 6789999974433 455688999999999999999753
No 94
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.17 E-value=57 Score=29.84 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhccccc
Q 004116 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 270 (773)
Q Consensus 222 yRNfMIntYR~NP~eYLTvTacRRnL----~G~dv~sI~RVH~FLE~WGLINY 270 (773)
-|-.|++....++...+|+.+.-..| .+.+..+|.|...+|+..|||.-
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 46678887766543789999874433 34568899999999999999974
No 95
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.99 E-value=3.1e+02 Score=24.03 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=32.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004116 593 AATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQ 649 (773)
Q Consensus 593 AA~KAk~LA~~EEREI~rLv~~IIe~QLKKLElKLk~feELE~~le~Ere~LE~~Rq 649 (773)
+|.-..-|-.+|-.++..|-..| +..|+...+.+++||+.+++-+..|....+
T Consensus 27 aA~Ee~YfrqkekEqL~~LKkkl----~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 27 QAEEERYFRARAKEQLAALKKHK----ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444555555555544443 566777788888888888777766665543
No 96
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.04 E-value=56 Score=30.59 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhccccc
Q 004116 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 270 (773)
Q Consensus 222 yRNfMIntYR~NP~eYLTvTacRRnL----~G~dv~sI~RVH~FLE~WGLINY 270 (773)
-|-.|++....++...+|+.+.-..| .+.+..+|.|...+|+..|||.-
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 46678887765533689999874433 35568899999999999999974
No 97
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.95 E-value=2.4e+02 Score=24.50 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004116 620 LKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTR 662 (773)
Q Consensus 620 LKKLElKLk~feELE~~le~Ere~LE~~Rq~L~~eR~~~~~~r 662 (773)
+.|||.|++..=+-=++|..|.++|......|..+...+...|
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~ 50 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQR 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 98
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=23.48 E-value=67 Score=29.01 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 004116 213 DHTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 270 (773)
Q Consensus 213 ~ktPeiYk~yRNfMIntYR~NP~eYL-TvTacRRnL~G~dv~sI~RVH~FLE~WGLINY 270 (773)
...-++|..+|+.|++- ..-|...| |..+.-+.+ |+....+.+...-|+.-|||--
T Consensus 13 ~~~~~i~~~i~~~I~~g-~~~~g~~Lps~~~La~~~-~vSr~tvr~Al~~L~~~G~i~~ 69 (125)
T 3neu_A 13 PIYSQISDWMKKQMITG-EWKGEDKLPSVREMGVKL-AVNPNTVSRAYQELERAGYIYA 69 (125)
T ss_dssp CHHHHHHHHHHHHHHTT-SSCTTCBCCCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cHHHHHHHHHHHHHHhC-CCCCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCeEEE
Confidence 34457788888887764 46799999 577754443 4557899999999999999966
No 99
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=23.42 E-value=57 Score=31.21 Aligned_cols=60 Identities=22% Similarity=0.362 Sum_probs=32.5
Q ss_pred ccCCCCCCCCCCCCcceeecccCcCcccChhhhccCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHH
Q 004116 343 LSENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLL 414 (773)
Q Consensus 343 ~~~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CFs~G~~~~~hss~dF~rvd~~~~~~~~~~~~WT~qEellL 414 (773)
..-..|.-|+.. .+.+-+.. ..+.+|.+|-.--+..+.| ..|++ . ...+..||.+|...|
T Consensus 35 p~N~~CaDCga~--~P~WaS~n-~GvfiC~~CsgiHR~LG~h--IS~Vr--S-----l~LD~~W~~~~l~~m 94 (144)
T 2p57_A 35 PTNKACFDCGAK--NPSWASIT-YGVFLCIDCSGVHRSLGVH--LSFIR--S-----TELDSNWNWFQLRCM 94 (144)
T ss_dssp GGGGBCTTTCCB--SCCEEEGG-GTEEECHHHHHHHHHHCTT--TCCEE--E-----SSSCCCCCHHHHHHH
T ss_pred CCCCcCCCCcCC--CCCeEEec-cCEEEhhhchHHHcCCCCC--CCeee--e-----cccCCCCCHHHHHHH
Confidence 344579999875 34444443 3578999997643332222 12233 1 111235998765554
No 100
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=23.28 E-value=39 Score=33.83 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=47.3
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 004116 213 DHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (773)
Q Consensus 213 ~ktPeiYk~yRNfMIntYR~NP~eYLTvTacRRnL~G~dv~sI~RVH~FLE~WGLINYq 271 (773)
+..+.+|..+|+.|+.- ++.|+..|+..+--..+ |+.-..|.+-..-|+.-|||-..
T Consensus 26 s~~~~v~~~L~~~I~~g-~l~pG~~L~e~~La~~l-gVSr~~VReAL~~L~~~Glv~~~ 82 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDG-SLPSGTALRQQELATLF-GVSRMPVREALRQLEAQSLLRVE 82 (237)
T ss_dssp GHHHHHHHHHHHHHHTS-SSCTTCBCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhC-CCCCcCeeCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEEe
Confidence 55688999999999986 47899999988854444 55578899999999999999873
No 101
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=22.67 E-value=1.7e+02 Score=24.37 Aligned_cols=57 Identities=9% Similarity=-0.046 Sum_probs=36.1
Q ss_pred cCcccCCC-CCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 004116 203 VPHFFSGK-SPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 270 (773)
Q Consensus 203 lPEFF~gk-~~~ktPeiYk~yRNfMIntYR~NP~eYLTvTacRRnL~G~dv~sI~RVH~FLE~WGLINY 270 (773)
|-+||.+. -..-|+..+.+|.+++.+ .+-++.+.+++.+ ..|..++.|+.+||+|..
T Consensus 40 ~~~~~~~~~l~~it~~~i~~~~~~l~~------~~~~s~~Ti~~~~-----~~lr~~~~~a~~~~~i~~ 97 (112)
T 2key_A 40 FKEYCEGLQFHELTEDFLRDYLIYMKK------TLCNADSTAQRNL-----STIKIYVSAAIKKGYMEN 97 (112)
T ss_dssp TTTSCSCCCTTTCCHHHHHHHHHHHHH------TSCCCHHHHHHHH-----HHHHHHHHHHHHTTSCCS
T ss_pred HHHHcCCCCHHHcCHHHHHHHHHHHHH------ccCcchhhHHHHH-----HHHHHHHHHHHHCCCccc
Confidence 44455332 224577777777776543 1235555665543 468889999999999965
No 102
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.18 E-value=88 Score=29.20 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhccccc
Q 004116 221 ECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 270 (773)
Q Consensus 221 ~yRNfMIntYR~NP~eYLTvTacRRnL----~G~dv~sI~RVH~FLE~WGLINY 270 (773)
.-|-.|++....+ ...+|+.+.-..| .+.+..+|.|...+|+..|||.-
T Consensus 27 ~qR~~IL~~l~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 27 KQREEVVSVLYRS-GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHHHHHHHHC-SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 3577888888776 4589999874433 34568899999999999999975
No 103
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=21.69 E-value=1e+02 Score=25.28 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 004116 223 RNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (773)
Q Consensus 223 RNfMIntYR~NP~eYLTvTacRRnL~G~dv~sI~RVH~FLE~WGLINYq 271 (773)
|..|+.....++ .+|+++.-+.+ |....++.|...-|+..|+|-..
T Consensus 2 r~~Il~~L~~~~--~~s~~eLa~~l-gvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 2 KNEILEFLNRHN--GGKTAEIAEAL-AVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHHSC--CCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEe
Confidence 566777766653 48998876655 55678999999999999999754
No 104
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.16 E-value=62 Score=30.69 Aligned_cols=96 Identities=16% Similarity=0.316 Sum_probs=48.6
Q ss_pred cCCCCCCCCCCCCcceeecccCcCcccChhhhccCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 004116 344 SENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGIEMYND 423 (773)
Q Consensus 344 ~~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CFs~G~~~~~hss~dF~rvd~~~~~~~~~~~~WT~qEellLLEaIe~ygg 423 (773)
.-..|.-|+.. .+.+-+.. ..+.+|.+|-.--+..+.| ..+|.. ..-+.||.+|...|.. +-. .
T Consensus 28 ~N~~CaDCga~--~P~WaS~n-~GvfiC~~CsgiHR~LG~h----iS~VkS------l~ld~w~~~~l~~m~~-~GN--~ 91 (141)
T 2crr_A 28 DNKYCADCEAK--GPRWASWN-IGVFICIRCAGIHRNLGVH----ISRVKS------VNLDQWTAEQIQCMQD-MGN--T 91 (141)
T ss_dssp GGSSCSSSCCS--SCCSEETT-TTEECCHHHHHHHHHHCTT----TCCCBC------SSSSCCCHHHHHHHHH-THH--H
T ss_pred cCCcCCCCCCC--CCCeEEec-cCeEEhhhhhHhHhcCCCC----CCeeeE------CCCCCCCHHHHHHHHH-Hcc--H
Confidence 34579989875 34444443 3578999997643332222 223332 1235799977655543 210 1
Q ss_pred CHHHHHH-HhC----CCCHHHHHHHHHhC-CCCCCCcc
Q 004116 424 NWNEIAE-HVS----TKSKAQCILHFVRL-PMEDGILE 455 (773)
Q Consensus 424 NW~~IAe-hVG----tKT~eECi~hFlqL-PIED~fLe 455 (773)
..+.|=+ ++. .-++.+-+..||+- |++-.|+.
T Consensus 92 ~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~ 129 (141)
T 2crr_A 92 KARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYD 129 (141)
T ss_dssp HHHHHGGGSCCTTCCCCCSHHHHHHHHHHHHTSCTTCC
T ss_pred HHHHHHHhcCCcccCCCCchHHHHHHHHHHHhcCcccC
Confidence 1111111 111 12345667778774 66666654
No 105
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.80 E-value=3.5e+02 Score=23.64 Aligned_cols=27 Identities=11% Similarity=0.351 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004116 633 VETLLMRECEQVEKARQRFATERTRIV 659 (773)
Q Consensus 633 LE~~le~Ere~LE~~Rq~L~~eR~~~~ 659 (773)
+..+++.|...|-++=..+..++.++.
T Consensus 50 ~~~~ye~~i~~Lr~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 50 LGDLYEEEMRELRRQVDQLTNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 106
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=20.50 E-value=2.3e+02 Score=28.65 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 004116 630 FAEVETLLMRECEQVE----KARQRFATERTRIVS 660 (773)
Q Consensus 630 feELE~~le~Ere~LE----~~Rq~L~~eR~~~~~ 660 (773)
+++||.-..+|..+|| +.++-||..|..+++
T Consensus 42 ~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~ 76 (225)
T 2e50_A 42 IDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIA 76 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHh
Confidence 3344444444444444 567789999998884
No 107
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=20.43 E-value=73 Score=33.38 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHHhcC---CCHHHHHHHh--CCCCHH
Q 004116 404 ETWSDQETFLLLEGIEMYN---DNWNEIAEHV--STKSKA 438 (773)
Q Consensus 404 ~~WT~qEellLLEaIe~yg---gNW~~IAehV--GtKT~e 438 (773)
..||+.|.-.|+-+|.+|| +.|+.|+.-- ..|+.+
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~ 43 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFE 43 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHH
Confidence 5799999999999999999 6899998763 246653
Done!