BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004117
(773 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
pdb|3MHS|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
Ubiquitin Aldehyde
pdb|4FJC|A Chain A, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
pdb|4FJC|E Chain E, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
Length = 476
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 11 FPGELNMQR--------RLSEPSQL-DLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQW 61
FP LNM+ + SE ++ D+IY+L ++ HKGT VN GHYIA K GQW
Sbjct: 387 FPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKISG-GQW 444
Query: 62 WEFDDEHVSNL 72
++F+D VS++
Sbjct: 445 FKFNDSMVSSI 455
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FIP|E Chain E, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FK5|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB MODULE
Length = 476
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 11 FPGELNMQR--------RLSEPSQL-DLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQW 61
FP LNM+ + SE ++ D+IY+L ++ HKGT VN GHYIA K GQW
Sbjct: 387 FPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKISG-GQW 444
Query: 62 WEFDDEHVSNL 72
++F+D VS++
Sbjct: 445 FKFNDSMVSSI 455
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
Length = 471
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 11 FPGELNMQR--------RLSEPSQL-DLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQW 61
FP LNM+ + SE ++ D+IY+L ++ HKGT VN GHYIA K GQW
Sbjct: 382 FPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKISG-GQW 439
Query: 62 WEFDDEHVSNL 72
++F+D VS++
Sbjct: 440 FKFNDSMVSSI 450
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|B Chain B, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|C Chain C, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|D Chain D, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|E Chain E, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|F Chain F, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
Length = 367
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 15 LNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVS 70
LNM + S +YDL AV H G A+ GHY A K++ G+W+ FDD +VS
Sbjct: 284 LNMSEFVCNLSARPYVYDLIAVSNHYG-AMGVGHYTAYAKNKLNGKWYYFDDSNVS 338
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase
6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A
Resolution
Length = 415
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 30 IYDLSAVLIHKGTAVNSGHYIALIKDE-NTGQWWEFDDEHVS 70
+Y+L V+ H+G SGHY A I+DE + +W++F+D+ VS
Sbjct: 345 VYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVS 386
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|B Chain B, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|C Chain C, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYO|A Chain A, Structure Of Usp14 Bound To Ubquitin Aldehyde
Length = 404
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 31 YDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVS 70
YDL AVL H+G + +SGHY++ +K + +W +FDD+ VS
Sbjct: 328 YDLQAVLTHQGRSSSSGHYVSWVKRKQ-DEWIKFDDDKVS 366
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp)
pdb|1NB8|B Chain B, Structure Of The Catalytic Domain Of Usp7 (Hausp)
Length = 353
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 4 KITSPFCFPGELNMQRRLSEPSQLDLI-YDLSAVLIHKGTAVNSGHYIALIKDENTGQWW 62
KI F FP +L + L + D Y L AVL+H G + GHY+ + + G+W
Sbjct: 213 KINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDN-HGGHYVVYLNPKGDGKWC 271
Query: 63 EFDDEHVS 70
+FDD+ VS
Sbjct: 272 KFDDDVVS 279
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|B Chain B, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|E Chain E, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
Length = 353
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 4 KITSPFCFPGELNMQRRLSEPSQLDLI-YDLSAVLIHKGTAVNSGHYIALIKDENTGQWW 62
KI F FP +L + L + D Y L AVL+H G + GHY+ + + G+W
Sbjct: 213 KINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDN-HGGHYVVYLNPKGDGKWC 271
Query: 63 EFDDEHVS 70
+FDD+ VS
Sbjct: 272 KFDDDVVS 279
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 4 KITSPFCFPGELNMQRRLSEPSQLDLI-YDLSAVLIHKGTAVNSGHYIALIKDENTGQWW 62
KI F FP +L + L + D Y L AVL+H G + GHY+ + + G+W
Sbjct: 382 KINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDN-HGGHYVVYLNPKGDGKWC 440
Query: 63 EFDDEHVS 70
+FDD+ VS
Sbjct: 441 KFDDDVVS 448
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
pdb|3V6E|A Chain A, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 367
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 4 KITSPFCFP-GELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWW 62
K+T+ FP +L+++ SE + +Y+L AV H GT + GHY A + TG+W
Sbjct: 276 KLTTFVNFPLRDLDLREFASENTN-HAVYNLYAVSNHSGTTM-GGHYTAYCRSPGTGEWH 333
Query: 63 EFDDEHVS 70
F+D V+
Sbjct: 334 TFNDSSVT 341
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex
Length = 374
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 4 KITSPFCFP-GELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWW 62
K+T+ FP +L+++ SE + +Y+L AV H GT + GHY A + TG+W
Sbjct: 283 KLTTFVNFPLRDLDLREFASENTN-HAVYNLYAVSNHSGTTMG-GHYTAYCRSPGTGEWH 340
Query: 63 EFDDEHVS 70
F+D V+
Sbjct: 341 TFNDSSVT 348
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin
Length = 359
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 4 KITSPFCFP-GELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWW 62
K+T+ FP +L+++ SE + +Y+L AV H GT + GHY A + TG+W
Sbjct: 257 KLTTFVNFPLRDLDLREFASENTN-HAVYNLYAVSNHSGTTM-GGHYTAYCRSPGTGEWH 314
Query: 63 EFDDEHVS 70
F+D V+
Sbjct: 315 TFNDSSVT 322
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With
Ubiquitin
Length = 348
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 4 KITSPFCFP-GELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWW 62
K+T+ FP +L+++ SE + +Y+L AV H GT + GHY A + TG+W
Sbjct: 257 KLTTFVNFPLRDLDLREFASENTN-HAVYNLYAVSNHSGTTM-GGHYTAYCRSPGTGEWH 314
Query: 63 EFDDEHVS 70
F+D V+
Sbjct: 315 TFNDSSVT 322
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 396
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 2 KKKITSPFCFPGE-LNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQ 60
K+K+ + FP E L++ + + P Y+L +V H G ++ GHY A K+ +
Sbjct: 307 KQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQR 365
Query: 61 WWEFDDE 67
W++FDD
Sbjct: 366 WFKFDDH 372
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin
Carboxyl-terminal Hydrolase 8
Length = 396
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 2 KKKITSPFCFPGE-LNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQ 60
K+K+ + FP E L++ + + P Y+L +V H G ++ GHY A K+ +
Sbjct: 307 KQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQR 365
Query: 61 WWEFDDE 67
W++FDD
Sbjct: 366 WFKFDDH 372
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Length = 854
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 31 YDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHV 69
Y L A + H GT+ GHY+ IK E G+W ++D+ V
Sbjct: 797 YQLFAFISHMGTSTMCGHYVCHIKKE--GRWVIYNDQKV 833
>pdb|4FFH|A Chain A, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Sucrose
pdb|4FFH|B Chain B, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Sucrose
pdb|4FFH|C Chain C, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Sucrose
pdb|4FFH|D Chain D, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Sucrose
pdb|4FFI|A Chain A, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Levanbiose
pdb|4FFI|B Chain B, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Levanbiose
pdb|4FFI|C Chain C, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Levanbiose
pdb|4FFI|D Chain D, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Levanbiose
Length = 492
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 332 GKLVEGTYYVSKSWLQQWTRRKNLDAPSEADGGPTTSIRCP 372
G+L +Y S + L+ WT R+N D P+ A GG I CP
Sbjct: 164 GRLRYAAFYTSPN-LRDWTLRRNFDYPNHALGG----IECP 199
>pdb|4FFG|A Chain A, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens In Complex With Dfa-Iv
pdb|4FFG|B Chain B, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens In Complex With Dfa-Iv
pdb|4FFG|C Chain C, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens In Complex With Dfa-Iv
pdb|4FFG|D Chain D, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens In Complex With Dfa-Iv
Length = 492
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 332 GKLVEGTYYVSKSWLQQWTRRKNLDAPSEADGGPTTSIRCP 372
G+L +Y S + L+ WT R+N D P+ A GG I CP
Sbjct: 164 GRLRYAAFYTSPN-LRDWTLRRNFDYPNHALGG----IECP 199
>pdb|4FFF|A Chain A, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens
pdb|4FFF|B Chain B, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens
pdb|4FFF|C Chain C, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens
pdb|4FFF|D Chain D, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens
Length = 490
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 332 GKLVEGTYYVSKSWLQQWTRRKNLDAPSEADGGPTTSIRCP 372
G+L +Y S + L+ WT R+N D P+ A GG I CP
Sbjct: 164 GRLRYAAFYTSPN-LRDWTLRRNFDYPNHALGG----IECP 199
>pdb|3KLS|X Chain X, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|Y Chain Y, Structure Of Complement C5 In Complex With Ssl7
pdb|3PRX|X Chain X, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|Y Chain Y, Structure Of Complement C5 In Complex With Cvf And Ssl7
Length = 231
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 119 EYYNGSNVERFTSNDAYMLMYNLRRDKEDSK 149
E YNGSNV RF D ++ L +DKE K
Sbjct: 65 ENYNGSNVVRFNPKDQNHQLFLLGKDKEQYK 95
>pdb|3H7L|A Chain A, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
pdb|3H7L|B Chain B, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
pdb|3H7L|C Chain C, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
Length = 586
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 701 QILHKGQ-RIIDQECATLADLNIFPGDK--LWVQDSEIHEHRDIADELSDQKMNVQHV 755
Q L+ G+ IID+ CA LA + +F K ++++S + R +A ++SD++ +QH
Sbjct: 293 QYLNDGEENIIDEYCALLASVELFKATKETRYLEESRLWAQRLVARQMSDEQ--IQHF 348
>pdb|2E7Z|A Chain A, Acetylene Hydratase From Pelobacter Acetylenicus
Length = 727
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 342 SKSWLQQWTRRKNLDAPSEADGG-PTTSIRCPHGQLMPEKAGGAKRLLVPEILWLFIYED 400
S W+ T L + DG P +IR PHG+ PE+ GG + +L + D
Sbjct: 641 SGEWIWVETTHGRLKLLLKHDGAQPEGTIRIPHGRWCPEQEGGPETGFSGAML----HND 696
Query: 401 AMKVKPDD 408
AM + DD
Sbjct: 697 AMVLSDDD 704
>pdb|1VLJ|A Chain A, Crystal Structure Of Nadh-Dependent Butanol Dehydrogenase
A (Tm0820) From Thermotoga Maritima At 1.78 A Resolution
pdb|1VLJ|B Chain B, Crystal Structure Of Nadh-Dependent Butanol Dehydrogenase
A (Tm0820) From Thermotoga Maritima At 1.78 A Resolution
Length = 407
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 492 IEPEILDGVIDSLKCEKHLRLLERPPDLVCKRGSIYQKGSATDGLTIVTENDWKWFCEEW 551
I EI +G I ++ + RL+E+P D + + A +G V +W C
Sbjct: 224 ISNEIAEGTIRTI-MKMTERLIEKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRI 282
Query: 552 GGIKEKGLSVIVDFSNNAGNELV 574
E LS + D ++ AG +V
Sbjct: 283 ----EHSLSALYDIAHGAGLAIV 301
>pdb|4GNS|B Chain B, Crystal Structure Of The Chs5-Chs6 Exomer Cargo Adaptor
Complex
Length = 754
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 455 LGKSIPLSLDCKYYLLPSTWLTKWRNYISPSGKNASSIEPEILDGVIDSLK 505
L + +P SL+C + S T NY+ S K+ +I P ++D ID LK
Sbjct: 223 LCRFLPRSLNCGWDSTKSMQATIVNNYLMYSLKSFIAITPSLVDFTIDYLK 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,393,013
Number of Sequences: 62578
Number of extensions: 1056898
Number of successful extensions: 2284
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2265
Number of HSP's gapped (non-prelim): 27
length of query: 773
length of database: 14,973,337
effective HSP length: 106
effective length of query: 667
effective length of database: 8,340,069
effective search space: 5562826023
effective search space used: 5562826023
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)