Query 004117
Match_columns 773
No_of_seqs 452 out of 1861
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 17:51:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01795 USP48_C USP ubiquitin- 100.0 1E-29 2.2E-34 221.5 8.4 104 659-767 3-107 (107)
2 cd02668 Peptidase_C19L A subfa 99.8 5.9E-20 1.3E-24 200.8 9.7 109 1-140 216-324 (324)
3 KOG1865 Ubiquitin carboxyl-ter 99.8 7.6E-20 1.7E-24 203.2 8.9 71 3-74 324-394 (545)
4 COG5077 Ubiquitin carboxyl-ter 99.8 2.1E-19 4.6E-24 202.3 7.2 140 3-191 399-542 (1089)
5 cd02664 Peptidase_C19H A subfa 99.7 4.2E-18 9E-23 186.5 7.6 73 2-74 195-306 (327)
6 cd02657 Peptidase_C19A A subfa 99.7 5.3E-18 1.1E-22 183.4 7.9 69 2-74 216-284 (305)
7 cd02667 Peptidase_C19K A subfa 99.7 7.4E-18 1.6E-22 180.5 8.7 72 2-74 168-265 (279)
8 cd02670 Peptidase_C19N A subfa 99.7 1.1E-17 2.4E-22 174.7 8.9 72 2-73 116-220 (241)
9 KOG1866 Ubiquitin carboxyl-ter 99.7 1.8E-18 3.9E-23 194.9 2.6 155 3-197 308-482 (944)
10 cd02663 Peptidase_C19G A subfa 99.7 1.2E-17 2.7E-22 180.6 8.0 71 2-74 208-278 (300)
11 cd02659 peptidase_C19C A subfa 99.7 5.1E-17 1.1E-21 177.8 10.2 73 2-75 212-295 (334)
12 cd02665 Peptidase_C19I A subfa 99.7 6E-17 1.3E-21 167.8 7.9 62 1-74 145-206 (228)
13 cd02669 Peptidase_C19M A subfa 99.7 1.2E-16 2.6E-21 181.7 8.4 72 2-73 350-425 (440)
14 cd02671 Peptidase_C19O A subfa 99.6 3.3E-16 7.1E-21 171.8 7.7 66 2-75 245-310 (332)
15 KOG4598 Putative ubiquitin-spe 99.6 1E-16 2.2E-21 178.9 3.4 100 28-186 367-466 (1203)
16 cd02661 Peptidase_C19E A subfa 99.6 7.1E-16 1.5E-20 165.9 8.2 71 2-73 219-289 (304)
17 cd02660 Peptidase_C19D A subfa 99.6 8.6E-16 1.9E-20 167.8 8.1 71 2-74 235-314 (328)
18 cd02662 Peptidase_C19F A subfa 99.6 1.4E-15 3E-20 159.6 7.5 60 2-73 145-224 (240)
19 PF00443 UCH: Ubiquitin carbox 99.6 2.7E-15 5.8E-20 156.4 8.0 71 2-73 178-252 (269)
20 cd02674 Peptidase_C19R A subfa 99.6 7.3E-15 1.6E-19 152.0 9.3 72 2-74 143-216 (230)
21 cd02658 Peptidase_C19B A subfa 99.5 1.2E-14 2.5E-19 157.9 8.4 61 2-73 234-296 (311)
22 KOG1863 Ubiquitin carboxyl-ter 99.5 2.8E-14 6.1E-19 177.1 11.9 608 1-710 377-1032(1093)
23 cd02257 Peptidase_C19 Peptidas 99.5 3.1E-14 6.7E-19 146.0 9.5 73 2-74 158-236 (255)
24 cd02673 Peptidase_C19Q A subfa 99.5 2.9E-14 6.2E-19 150.0 7.9 57 14-74 171-228 (245)
25 KOG0005 Ubiquitin-like protein 99.5 1.3E-14 2.8E-19 114.7 3.9 62 669-731 9-70 (70)
26 cd01793 Fubi Fubi ubiquitin-li 99.5 5.3E-14 1.2E-18 120.7 7.1 63 671-734 9-71 (74)
27 cd02672 Peptidase_C19P A subfa 99.5 7.2E-14 1.6E-18 148.9 8.0 71 3-73 185-259 (268)
28 cd01794 DC_UbP_C dendritic cel 99.5 1.3E-13 2.8E-18 117.1 7.1 62 670-732 8-69 (70)
29 cd01807 GDX_N ubiquitin-like d 99.5 1.4E-13 3E-18 118.1 7.1 63 670-733 10-72 (74)
30 KOG1867 Ubiquitin-specific pro 99.5 4.7E-14 1E-18 160.8 5.4 69 3-74 395-468 (492)
31 COG5560 UBP12 Ubiquitin C-term 99.4 8.9E-14 1.9E-18 155.4 6.2 72 2-74 734-806 (823)
32 cd01796 DDI1_N DNA damage indu 99.4 3.4E-13 7.5E-18 114.8 7.1 62 670-731 9-70 (71)
33 KOG0003 Ubiquitin/60s ribosoma 99.4 3.2E-14 6.9E-19 125.6 -0.6 67 667-734 7-73 (128)
34 cd01791 Ubl5 UBL5 ubiquitin-li 99.4 6.2E-13 1.3E-17 113.8 6.9 60 671-731 12-71 (73)
35 cd01798 parkin_N amino-termina 99.4 7.2E-13 1.6E-17 112.4 7.2 62 670-732 8-69 (70)
36 cd01810 ISG15_repeat2 ISG15 ub 99.4 1.4E-12 2.9E-17 112.0 7.2 62 671-733 9-70 (74)
37 cd01799 Hoil1_N Ubiquitin-like 99.3 1.3E-12 2.9E-17 112.3 6.5 60 671-731 13-73 (75)
38 cd01802 AN1_N ubiquitin-like d 99.3 2.4E-12 5.1E-17 117.5 7.3 63 671-734 38-100 (103)
39 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 1.6E-12 3.5E-17 110.7 5.2 53 679-732 19-74 (75)
40 cd01797 NIRF_N amino-terminal 99.3 3.1E-12 6.7E-17 111.0 7.0 61 673-734 14-75 (78)
41 PTZ00044 ubiquitin; Provisiona 99.3 3.5E-12 7.6E-17 109.8 7.1 64 670-734 10-73 (76)
42 PF00240 ubiquitin: Ubiquitin 99.3 4.5E-12 9.8E-17 106.9 7.6 62 671-733 6-67 (69)
43 cd01800 SF3a120_C Ubiquitin-li 99.3 4E-12 8.7E-17 109.7 7.2 65 669-734 6-70 (76)
44 KOG1868 Ubiquitin C-terminal h 99.3 2.8E-12 6.1E-17 149.1 8.1 71 2-73 558-629 (653)
45 KOG0004 Ubiquitin/40S ribosoma 99.3 1.7E-12 3.7E-17 123.3 3.7 64 670-734 10-73 (156)
46 cd02666 Peptidase_C19J A subfa 99.3 6.2E-12 1.3E-16 138.4 7.6 46 28-74 278-323 (343)
47 cd01808 hPLIC_N Ubiquitin-like 99.3 1E-11 2.2E-16 105.7 7.1 59 673-732 12-70 (71)
48 cd01806 Nedd8 Nebb8-like ubiq 99.3 1.3E-11 2.8E-16 105.9 7.6 63 671-734 11-73 (76)
49 KOG1870 Ubiquitin C-terminal h 99.2 3.7E-12 8.1E-17 154.7 5.1 69 2-73 755-824 (842)
50 cd01805 RAD23_N Ubiquitin-like 99.2 1.8E-11 3.9E-16 105.6 7.7 64 670-734 10-75 (77)
51 smart00695 DUSP Domain in ubiq 99.2 7.2E-12 1.6E-16 110.7 5.2 72 227-298 3-85 (86)
52 cd01812 BAG1_N Ubiquitin-like 99.2 1.5E-11 3.2E-16 104.3 6.4 62 670-732 9-70 (71)
53 cd01803 Ubiquitin Ubiquitin. U 99.2 2.1E-11 4.6E-16 104.6 7.1 63 671-734 11-73 (76)
54 cd01809 Scythe_N Ubiquitin-lik 99.2 2.6E-11 5.7E-16 102.9 7.4 61 671-732 11-71 (72)
55 cd01804 midnolin_N Ubiquitin-l 99.2 2.2E-11 4.9E-16 105.6 7.0 62 671-734 12-73 (78)
56 cd01792 ISG15_repeat1 ISG15 ub 99.2 2.1E-11 4.6E-16 106.2 6.1 63 671-734 13-77 (80)
57 COG5533 UBP5 Ubiquitin C-termi 99.2 3.5E-11 7.5E-16 125.3 8.3 63 8-73 319-396 (415)
58 cd01813 UBP_N UBP ubiquitin pr 99.1 1.1E-10 2.4E-15 100.2 6.3 61 670-731 9-72 (74)
59 cd01790 Herp_N Homocysteine-re 99.1 1.7E-10 3.7E-15 99.7 6.6 61 671-732 14-78 (79)
60 KOG1864 Ubiquitin-specific pro 99.0 2.5E-10 5.3E-15 132.6 7.7 77 2-79 482-558 (587)
61 cd01763 Sumo Small ubiquitin-r 99.0 5.6E-10 1.2E-14 98.9 8.0 64 670-734 21-84 (87)
62 cd01814 NTGP5 Ubiquitin-like N 99.0 5.8E-10 1.3E-14 101.4 5.4 60 674-734 19-91 (113)
63 smart00213 UBQ Ubiquitin homol 99.0 1E-09 2.3E-14 90.4 5.7 55 671-726 10-64 (64)
64 PF06337 DUSP: DUSP domain; I 98.9 2.5E-09 5.4E-14 96.7 8.0 91 464-560 1-96 (99)
65 KOG1873 Ubiquitin-specific pro 98.9 9.3E-11 2E-15 133.9 -2.1 71 3-74 766-861 (877)
66 KOG1872 Ubiquitin-specific pro 98.9 6.2E-10 1.3E-14 122.6 3.8 46 28-74 401-446 (473)
67 smart00695 DUSP Domain in ubiq 98.9 6.3E-09 1.4E-13 91.9 8.5 75 463-556 3-77 (86)
68 cd01769 UBL Ubiquitin-like dom 98.9 5.2E-09 1.1E-13 87.5 7.4 62 670-732 7-68 (69)
69 cd01789 Alp11_N Ubiquitin-like 98.8 6.4E-09 1.4E-13 91.6 6.7 62 673-734 15-82 (84)
70 PF06337 DUSP: DUSP domain; I 98.8 2.6E-09 5.5E-14 96.7 3.3 66 229-294 2-95 (99)
71 KOG0944 Ubiquitin-specific pro 98.8 5.5E-09 1.2E-13 118.6 6.6 42 27-70 703-744 (763)
72 cd01788 ElonginB Ubiquitin-lik 98.7 2.4E-08 5.3E-13 90.4 6.9 77 667-744 8-94 (119)
73 TIGR00601 rad23 UV excision re 98.7 3.1E-08 6.7E-13 109.9 7.5 63 671-734 11-76 (378)
74 KOG0010 Ubiquitin-like protein 98.6 5.3E-08 1.1E-12 108.3 8.0 70 670-740 24-93 (493)
75 PF14560 Ubiquitin_2: Ubiquiti 98.4 3.6E-07 7.7E-12 81.0 6.2 64 671-734 14-84 (87)
76 PF11976 Rad60-SLD: Ubiquitin- 98.4 4.9E-07 1.1E-11 76.9 6.7 61 670-731 10-71 (72)
77 PF13423 UCH_1: Ubiquitin carb 98.4 3.7E-07 8.1E-12 98.8 7.2 67 3-69 220-295 (295)
78 COG5207 UBP14 Isopeptidase T [ 98.4 2.1E-07 4.5E-12 102.8 4.9 45 29-73 686-732 (749)
79 KOG0001 Ubiquitin and ubiquiti 98.4 8.8E-07 1.9E-11 73.9 7.7 65 669-734 8-72 (75)
80 KOG1871 Ubiquitin-specific pro 98.3 9.2E-07 2E-11 95.7 6.5 73 3-75 322-400 (420)
81 PF13881 Rad60-SLD_2: Ubiquiti 98.1 6.8E-06 1.5E-10 76.1 6.6 62 672-734 15-89 (111)
82 PLN02560 enoyl-CoA reductase 98.0 8.4E-06 1.8E-10 88.6 7.1 61 673-734 16-84 (308)
83 cd01801 Tsc13_N Ubiquitin-like 98.0 1.1E-05 2.3E-10 69.9 5.6 54 678-732 20-76 (77)
84 PF11543 UN_NPL4: Nuclear pore 98.0 6.8E-06 1.5E-10 71.7 4.0 61 671-731 14-78 (80)
85 KOG4495 RNA polymerase II tran 97.9 1.9E-05 4.2E-10 69.3 5.1 79 665-743 6-92 (110)
86 cd00196 UBQ Ubiquitin-like pro 97.8 6.3E-05 1.4E-09 59.5 7.3 61 670-731 7-67 (69)
87 KOG0011 Nucleotide excision re 97.8 2.5E-05 5.4E-10 83.3 5.9 63 671-734 11-75 (340)
88 KOG4248 Ubiquitin-like protein 97.7 3.9E-05 8.5E-10 91.7 6.1 61 671-733 13-73 (1143)
89 cd01811 OASL_repeat1 2'-5' oli 97.4 0.0004 8.7E-09 58.6 6.7 63 671-734 11-77 (80)
90 KOG0006 E3 ubiquitin-protein l 97.0 0.00061 1.3E-08 71.9 4.0 60 671-731 14-73 (446)
91 KOG1872 Ubiquitin-specific pro 95.8 0.012 2.5E-07 66.2 5.1 62 671-733 13-75 (473)
92 PF11470 TUG-UBL1: GLUT4 regul 95.7 0.031 6.7E-07 46.9 6.3 59 671-730 7-65 (65)
93 PF08817 YukD: WXG100 protein 95.0 0.035 7.6E-07 48.2 4.6 60 671-731 13-79 (79)
94 KOG1275 PAB-dependent poly(A) 94.3 0.076 1.6E-06 63.7 6.4 48 28-75 788-843 (1118)
95 KOG2026 Spindle pole body prot 93.9 0.042 9E-07 60.3 3.2 70 2-74 352-425 (442)
96 cd01772 SAKS1_UBX SAKS1-like U 93.9 0.31 6.8E-06 42.3 8.0 59 672-731 16-78 (79)
97 smart00166 UBX Domain present 93.4 0.27 5.9E-06 42.7 6.8 61 671-731 15-79 (80)
98 KOG3206 Alpha-tubulin folding 93.4 0.14 3E-06 51.9 5.5 59 676-734 18-82 (234)
99 PF00789 UBX: UBX domain; Int 93.4 0.24 5.2E-06 43.0 6.5 61 671-731 17-81 (82)
100 KOG0013 Uncharacterized conser 92.9 0.14 3E-06 51.9 4.7 72 662-734 146-221 (231)
101 KOG1769 Ubiquitin-like protein 92.7 0.4 8.6E-06 43.3 6.8 63 671-734 31-93 (99)
102 PF10302 DUF2407: DUF2407 ubiq 92.7 0.17 3.7E-06 45.9 4.6 47 672-719 13-63 (97)
103 PF14836 Ubiquitin_3: Ubiquiti 92.5 0.39 8.5E-06 42.7 6.5 62 671-733 14-80 (88)
104 KOG1639 Steroid reductase requ 91.8 0.27 5.8E-06 51.1 5.3 59 675-734 17-80 (297)
105 KOG3493 Ubiquitin-like protein 91.1 0.096 2.1E-06 43.2 1.0 61 669-730 10-70 (73)
106 cd01770 p47_UBX p47-like ubiqu 88.0 1 2.2E-05 39.2 5.2 57 671-727 15-74 (79)
107 cd01767 UBX UBX (ubiquitin reg 87.8 1.9 4.1E-05 37.0 6.8 59 671-731 13-75 (77)
108 cd01774 Faf1_like2_UBX Faf1 ik 86.9 2.7 5.9E-05 37.1 7.3 57 674-731 18-83 (85)
109 PF15044 CLU_N: Mitochondrial 86.5 1 2.2E-05 38.9 4.3 54 677-731 1-56 (76)
110 cd01773 Faf1_like1_UBX Faf1 ik 85.4 3.9 8.4E-05 36.0 7.3 61 671-732 16-80 (82)
111 cd01771 Faf1_UBX Faf1 UBX doma 80.8 6 0.00013 34.6 6.7 59 672-731 16-78 (80)
112 KOG0012 DNA damage inducible p 70.2 4.2 9.1E-05 44.8 3.5 64 671-734 13-77 (380)
113 cd06406 PB1_P67 A PB1 domain i 68.1 9.3 0.0002 33.5 4.5 37 671-707 11-47 (80)
114 COG5227 SMT3 Ubiquitin-like pr 66.7 14 0.00031 32.8 5.4 75 657-732 15-95 (103)
115 PF15499 Peptidase_C98: Ubiqui 64.8 11 0.00025 39.9 5.2 37 28-68 216-252 (275)
116 PF13019 Telomere_Sde2: Telome 59.5 29 0.00064 34.5 6.8 56 671-726 15-73 (162)
117 cd00754 MoaD Ubiquitin domain 57.2 29 0.00063 29.5 5.8 55 671-731 16-74 (80)
118 COG5560 UBP12 Ubiquitin C-term 56.4 16 0.00034 43.3 5.0 90 673-771 470-565 (823)
119 TIGR02958 sec_mycoba_snm4 secr 55.1 34 0.00074 39.7 7.6 77 672-749 13-96 (452)
120 PF05408 Peptidase_C28: Foot-a 54.8 21 0.00045 36.0 4.9 36 34-75 130-165 (193)
121 PF14453 ThiS-like: ThiS-like 54.8 45 0.00098 27.4 6.0 49 671-731 6-54 (57)
122 PF08337 Plexin_cytopl: Plexin 52.2 22 0.00047 42.0 5.3 61 673-734 204-290 (539)
123 PF11620 GABP-alpha: GA-bindin 50.4 34 0.00073 30.3 4.9 61 673-734 5-65 (88)
124 PF10209 DUF2340: Uncharacteri 49.4 56 0.0012 30.9 6.6 69 663-731 8-106 (122)
125 COG5100 NPL4 Nuclear pore prot 48.0 38 0.00082 38.0 6.0 64 671-734 10-80 (571)
126 cd00565 ThiS ThiaminS ubiquiti 45.3 71 0.0015 26.3 6.1 53 673-731 7-59 (65)
127 PRK06437 hypothetical protein; 43.4 80 0.0017 26.5 6.1 51 671-731 11-61 (67)
128 cd01778 RASSF1_RA Ubiquitin-li 42.6 49 0.0011 30.0 4.9 60 658-717 3-73 (96)
129 PF02192 PI3K_p85B: PI3-kinase 42.6 28 0.0006 30.4 3.2 27 673-699 2-28 (78)
130 KOG2086 Protein tyrosine phosp 39.9 39 0.00084 37.9 4.6 58 671-728 316-376 (380)
131 TIGR01683 thiS thiamine biosyn 39.4 95 0.0021 25.5 5.9 53 673-731 6-58 (64)
132 KOG4250 TANK binding protein k 37.8 35 0.00075 41.2 4.1 38 671-708 325-362 (732)
133 smart00143 PI3K_p85B PI3-kinas 36.3 36 0.00078 29.7 3.0 26 673-698 2-27 (78)
134 cd01768 RA RA (Ras-associating 36.1 1.5E+02 0.0032 25.6 7.0 48 671-718 13-68 (87)
135 PF12436 USP7_ICP0_bdg: ICP0-b 35.3 43 0.00094 35.6 4.1 61 673-734 87-153 (249)
136 cd01776 Rin1_RA Ubiquitin doma 33.4 88 0.0019 27.7 4.8 41 673-713 16-61 (87)
137 PF00788 RA: Ras association ( 33.0 1.1E+02 0.0023 26.5 5.7 49 672-720 18-74 (93)
138 smart00666 PB1 PB1 domain. Pho 32.0 96 0.0021 26.4 5.0 36 671-706 11-46 (81)
139 COG5417 Uncharacterized small 31.5 1.3E+02 0.0029 26.0 5.4 60 670-730 16-80 (81)
140 PF12754 Blt1: Cell-cycle cont 30.7 17 0.00036 39.7 0.0 44 679-723 102-160 (309)
141 TIGR01687 moaD_arch MoaD famil 30.4 2E+02 0.0043 25.0 6.8 56 671-731 16-82 (88)
142 PF02017 CIDE-N: CIDE-N domain 29.6 1E+02 0.0022 27.0 4.6 49 681-733 21-71 (78)
143 TIGR01682 moaD molybdopterin c 29.4 1.9E+02 0.0041 24.7 6.5 55 671-731 16-74 (80)
144 cd06411 PB1_p51 The PB1 domain 28.9 93 0.002 27.2 4.3 36 671-706 7-42 (78)
145 PF14451 Ub-Mut7C: Mut7-C ubiq 28.2 1.4E+02 0.003 26.3 5.3 51 671-731 23-74 (81)
146 PTZ00380 microtubule-associate 27.8 70 0.0015 30.3 3.6 45 675-720 45-89 (121)
147 smart00455 RBD Raf-like Ras-bi 26.4 1.1E+02 0.0023 26.1 4.2 40 671-710 10-51 (70)
148 PF14732 UAE_UbL: Ubiquitin/SU 26.3 52 0.0011 29.2 2.4 56 679-734 7-70 (87)
149 cd01615 CIDE_N CIDE_N domain, 25.9 1.1E+02 0.0024 26.7 4.2 49 681-733 21-71 (78)
150 PRK08364 sulfur carrier protei 25.8 2.6E+02 0.0057 23.4 6.5 49 673-731 16-64 (70)
151 cd01612 APG12_C Ubiquitin-like 25.1 1.4E+02 0.0031 26.5 4.9 46 674-719 19-65 (87)
152 smart00266 CAD Domains present 23.0 2.4E+02 0.0052 24.5 5.6 49 681-733 19-69 (74)
153 PF08825 E2_bind: E2 binding d 21.6 1.1E+02 0.0025 27.0 3.5 58 675-733 1-71 (84)
154 COG5629 Predicted metal-bindin 21.4 47 0.001 35.4 1.3 88 254-372 86-173 (321)
155 PF06487 SAP18: Sin3 associate 20.5 87 0.0019 29.6 2.8 26 706-731 94-119 (120)
156 PF00564 PB1: PB1 domain; Int 20.3 1.9E+02 0.0042 24.5 4.8 33 674-706 15-47 (84)
No 1
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.96 E-value=1e-29 Score=221.54 Aligned_cols=104 Identities=36% Similarity=0.468 Sum_probs=101.5
Q ss_pred cccccccccCCCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecccccC
Q 004117 659 DRRASKRSRKTRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSEIHEH 738 (773)
Q Consensus 659 ~~R~S~R~R~~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~~~~~ 738 (773)
++|||+|+|+.++..+|+|++++||.+||.+||++|||+|++|+|+++|+.|.||++||++|||.+|++|+|.+++
T Consensus 3 ~irrs~r~r~~~~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide---- 78 (107)
T cd01795 3 VIRRSMRHRKVRGEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE---- 78 (107)
T ss_pred ccchhhhhccCCCCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC----
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccch-hhhcccccccccccccccccccc
Q 004117 739 RDIADE-LSDQKMNVQHVEEGFRGTLLTSN 767 (773)
Q Consensus 739 ~~~~d~-~~~~~~~~~~~E~GF~gT~L~~~ 767 (773)
|+.|+ ++++.+++++||+||+||+|+|+
T Consensus 79 -P~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (107)
T cd01795 79 -PIADYAAMDDVMQVCMPEEGFKGTGLLGH 107 (107)
T ss_pred -CcccHHHHHHHHHhcCcccccccccccCC
Confidence 99999 88999999999999999999985
No 2
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.80 E-value=5.9e-20 Score=200.75 Aligned_cols=109 Identities=40% Similarity=0.694 Sum_probs=87.3
Q ss_pred CccccCcceecCCcccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCCCCCCCC
Q 004117 1 MKKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEG 80 (773)
Q Consensus 1 ~rkKi~~~i~FP~~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~~~~~~~ 80 (773)
+++|+++.|.||.+|||++|+.........|+|+|||+|.|.++++|||+|+||+..+++||+|||+.|++++...+.+.
T Consensus 216 ~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~ 295 (324)
T cd02668 216 AKKKLNASISFPEILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLG 295 (324)
T ss_pred cceeCCcEEECCCeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcc
Confidence 36899999999999999999876555578999999999999989999999999997789999999999999997666543
Q ss_pred CCCCCCcccccCCcccCCccccccccCCCCcccCCCCccccCCCccccccCCceEEEEEE
Q 004117 81 SSSSGSKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYN 140 (773)
Q Consensus 81 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~ 140 (773)
.+..+.+ +.......+...+.+||||||+
T Consensus 296 ~~~~~~~-------------------------------~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 296 NSEDPAK-------------------------------PRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred ccccccc-------------------------------ccccccCCCccccCceEEEEeC
Confidence 3322111 1111224457899999999995
No 3
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.6e-20 Score=203.16 Aligned_cols=71 Identities=39% Similarity=0.778 Sum_probs=67.8
Q ss_pred cccCcceecCCcccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCC
Q 004117 3 KKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 3 kKi~~~i~FP~~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~ 74 (773)
.||++.|.||++|||.|||+.+...+..|.|+|||+|.|.++++|||++|||+ ..|+||+|||+.|+.++.
T Consensus 324 gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks-~~g~Wy~~DDS~V~~~~~ 394 (545)
T KOG1865|consen 324 GKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKS-QNGQWYKMDDSEVTQSSI 394 (545)
T ss_pred cccccccCCcccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEc-CCCceEEccCceeeeccc
Confidence 69999999999999999999888789999999999999999999999999999 688999999999999984
No 4
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.1e-19 Score=202.34 Aligned_cols=140 Identities=28% Similarity=0.425 Sum_probs=108.0
Q ss_pred cccCcceecCCcccCCCCcCCCCC----CCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCCCCCC
Q 004117 3 KKITSPFCFPGELNMQRRLSEPSQ----LDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFG 78 (773)
Q Consensus 3 kKi~~~i~FP~~LDm~~~~~~~~~----~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~~~~~ 78 (773)
-|||++.+||+++||.||++.... ..+.|.|+|||+|.|. .+.|||||++|...+|.||+|||+.|++.+
T Consensus 399 vKINDryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsGD-l~~GHyYallKpe~dg~WykfdDtrVtrat----- 472 (1089)
T COG5077 399 VKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGD-LHEGHYYALLKPEKDGRWYKFDDTRVTRAT----- 472 (1089)
T ss_pred eeecccccCcchhccccccCchhhhhcccCcEEEEEEEEEeccc-cCCceEEEEeccccCCCceeecceehhhHH-----
Confidence 599999999999999999986532 3589999999999999 899999999999999999999999999998
Q ss_pred CCCCCCCCcccccCCcccCCccccccccCCCCcccCCCCccccCCCccccccCCceEEEEEEecCccccccccccccccc
Q 004117 79 EGSSSSGSKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVN 158 (773)
Q Consensus 79 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~~~~~~~~~~~~ 158 (773)
.|++..+++||++..... .........-.+||||+|-|++..+ ++++|+
T Consensus 473 -------~kevleeNfGgd~~~~~k------------------~r~~~~~kRfmsAYmLvYlRks~~d-----dLlnPV- 521 (1089)
T COG5077 473 -------EKEVLEENFGGDHPYKDK------------------IRDHSGIKRFMSAYMLVYLRKSMLD-----DLLNPV- 521 (1089)
T ss_pred -------HHHHHHHhcCCCCCCccc------------------ccCCchhhhhhhhheeeeehHhHHH-----hhhCch-
Confidence 456777788764443221 0112235577899999999998653 333332
Q ss_pred chhhhhhhhccCCCCCcchhHHHHHHHHHHHHh
Q 004117 159 NMEIESEMIFFNDDIFLPSHLGKDIKELNRSYL 191 (773)
Q Consensus 159 ~~~~~~~~~~~~~~~~lP~~l~~~V~~~N~~~~ 191 (773)
....+|+|+.+.+.++-+.-+
T Consensus 522 ------------~a~diP~hv~e~l~eei~~~e 542 (1089)
T COG5077 522 ------------AAVDIPPHVEEVLSEEIDKTE 542 (1089)
T ss_pred ------------hhhhCCHHHHHhhCHHHHHHH
Confidence 234699999988877654333
No 5
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.73 E-value=4.2e-18 Score=186.55 Aligned_cols=73 Identities=26% Similarity=0.518 Sum_probs=63.1
Q ss_pred ccccCcceecCCcccCCCCcCCC-------------------CCCCcceEEEEEEEeecCCCCCceEEEEEEcCC-----
Q 004117 2 KKKITSPFCFPGELNMQRRLSEP-------------------SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN----- 57 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~~-------------------~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~----- 57 (773)
+.||++.|.||..|||.+|+... ......|+|+|||+|.|.++++|||+||||+..
T Consensus 195 ~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~ 274 (327)
T cd02664 195 REKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADST 274 (327)
T ss_pred ceecCceEecCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccc
Confidence 57999999999999999997311 123679999999999998899999999999854
Q ss_pred ---------------CCcEEEEcCcceeeeCC
Q 004117 58 ---------------TGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 58 ---------------~~~W~~FdD~~V~~~~~ 74 (773)
++.||+|||+.|++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~ 306 (327)
T cd02664 275 GQECPEPKDAEENDESKNWYLFNDSRVTFSSF 306 (327)
T ss_pred cccccccccccccCCCCCEEEEeCCceEECCH
Confidence 47999999999999984
No 6
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.72 E-value=5.3e-18 Score=183.40 Aligned_cols=69 Identities=38% Similarity=0.697 Sum_probs=63.7
Q ss_pred ccccCcceecCCcccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCC
Q 004117 2 KKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~ 74 (773)
+.|+++.|.||.+|||.+|+.. +..|+|+|||+|.|.++++|||+|||++..++.||.|||+.|++++.
T Consensus 216 ~~Ki~~~v~fP~~Ldl~~~~~~----~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~ 284 (305)
T cd02657 216 KAKILRKVKFPFELDLYELCTP----SGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTE 284 (305)
T ss_pred eeecCcEEECCceEecccccCC----CCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCH
Confidence 5799999999999999999873 57899999999999889999999999996669999999999999984
No 7
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.72 E-value=7.4e-18 Score=180.52 Aligned_cols=72 Identities=29% Similarity=0.565 Sum_probs=63.9
Q ss_pred ccccCcceecCCcccCCCCcCCC-----CCCCcceEEEEEEEeecCCCCCceEEEEEEcCC-------------------
Q 004117 2 KKKITSPFCFPGELNMQRRLSEP-----SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN------------------- 57 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~~-----~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~------------------- 57 (773)
+.|+++.|.||.+|||++|+... ......|+|+|||+|.|++ ++|||+||||+..
T Consensus 168 ~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~-~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~ 246 (279)
T cd02667 168 LRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTM-RSGHYVAYVKVRPPQQRLSDLTKSKPAADEAG 246 (279)
T ss_pred ceecCceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCCC-CCCEeEEEEEcCccccccccccccccccccCC
Confidence 57999999999999999998762 2246899999999999996 9999999999754
Q ss_pred --CCcEEEEcCcceeeeCC
Q 004117 58 --TGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 58 --~~~W~~FdD~~V~~~~~ 74 (773)
+++||+|||+.|++++.
T Consensus 247 ~~~~~W~~~dD~~V~~v~~ 265 (279)
T cd02667 247 PGSGQWYYISDSDVREVSL 265 (279)
T ss_pred CCCCcEEEEECCccEECCH
Confidence 78999999999999983
No 8
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.72 E-value=1.1e-17 Score=174.66 Aligned_cols=72 Identities=22% Similarity=0.444 Sum_probs=62.9
Q ss_pred ccccCcceecCCcccCCCCcCCCC----------------------CCCcceEEEEEEEeecCCCCCceEEEEEEcCC--
Q 004117 2 KKKITSPFCFPGELNMQRRLSEPS----------------------QLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN-- 57 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~~~----------------------~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~-- 57 (773)
+.|+++.|.||..|||.+|+.... .....|+|+|||+|.|+++++|||+||||+..
T Consensus 116 ~~Kl~~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~ 195 (241)
T cd02670 116 AQKMFKKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYS 195 (241)
T ss_pred ceeCCcEECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCccc
Confidence 579999999999999999986531 23578999999999999899999999999875
Q ss_pred ---------CCcEEEEcCcceeeeC
Q 004117 58 ---------TGQWWEFDDEHVSNLG 73 (773)
Q Consensus 58 ---------~~~W~~FdD~~V~~~~ 73 (773)
.+.||+|||..|+.+.
T Consensus 196 ~~~~~~~~~~~~W~~FDD~~v~~~~ 220 (241)
T cd02670 196 LTETDNEAYNAQWVFFDDMADRDGV 220 (241)
T ss_pred ccccccCCCCCeEEEecCccccccc
Confidence 3899999999988776
No 9
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.8e-18 Score=194.87 Aligned_cols=155 Identities=24% Similarity=0.373 Sum_probs=108.2
Q ss_pred cccCcceecCCcccCCCCcCCC-----------------CCCCcceEEEEEEEeecCCCCCceEEEEEEcC---CCCcEE
Q 004117 3 KKITSPFCFPGELNMQRRLSEP-----------------SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDE---NTGQWW 62 (773)
Q Consensus 3 kKi~~~i~FP~~LDm~~~~~~~-----------------~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~---~~~~W~ 62 (773)
.|.|..|.||.+|||.||+... +..+.+|+|+|||+|+|. |++|||++||++. .+++||
T Consensus 308 iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGq-AsaGHYySfIk~rr~~~~~kWy 386 (944)
T KOG1866|consen 308 IKFNDYFRFPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQ-ASAGHYYSFIKQRRGEDGNKWY 386 (944)
T ss_pred cccchhcccchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEeccc-ccCcchhhhhhhhccCCCCceE
Confidence 5899999999999999998432 224899999999999999 9999999999964 457999
Q ss_pred EEcCcceeeeCCCCCCCCCCCCCCcccccCCcccCCccccccccCCCCcccCCCCccccCCCccccccCCceEEEEEEec
Q 004117 63 EFDDEHVSNLGHHPFGEGSSSSGSKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLR 142 (773)
Q Consensus 63 ~FdD~~V~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~ 142 (773)
+|||..|++++.+ +++.+.|| |+++.+.. -+.. .-+..|||||||.|.
T Consensus 387 kfnD~~Vte~~~n------------~me~~cfG----Gey~q~~~--------------~~~~--rrR~WNAYmlFYer~ 434 (944)
T KOG1866|consen 387 KFNDGDVTECKMN------------EMENECFG----GEYMQMMK--------------RMSY--RRRWWNAYMLFYERM 434 (944)
T ss_pred eccCccccccchh------------hHHHHhhc----chhhhccc--------------ccch--HHHhhhhHHHHHHHh
Confidence 9999999999965 34445555 33332100 0111 227899999999999
Q ss_pred CcccccccccccccccchhhhhhhhccCCCCCcchhHHHHHHHHHHHHhhhHHHH
Q 004117 143 RDKEDSKRKDVVHDVNNMEIESEMIFFNDDIFLPSHLGKDIKELNRSYLDGCEQF 197 (773)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~l~~~V~~~N~~~~~~~e~~ 197 (773)
++....-+-.+ ..++-++ .....++.|+.+.+.|+.+|-+|++--..|
T Consensus 435 ~d~p~~~~p~~------~~~~l~~-~s~ei~~~~~~i~r~vrd~n~kFm~nRd~~ 482 (944)
T KOG1866|consen 435 DDIPTDDEPIR------EILSLTI-DSPEIIPMSSPIERSVRDQNVKFMHNRDQY 482 (944)
T ss_pred cCCCccccccc------ccccccc-CCcccCCCchHHHHHHHHhhhhhhcccchh
Confidence 86542211000 0111111 122335578899999999999998554444
No 10
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.71 E-value=1.2e-17 Score=180.55 Aligned_cols=71 Identities=34% Similarity=0.634 Sum_probs=64.1
Q ss_pred ccccCcceecCCcccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCC
Q 004117 2 KKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~ 74 (773)
+.|+++.|.||.+|||.++..........|+|+|||+|.|+++++|||+||+|+ ++.||+|||+.|++++.
T Consensus 208 ~~Ki~~~v~fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~--~~~W~~fdD~~V~~~~~ 278 (300)
T cd02663 208 YIKLFYRVVFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKS--HGGWLLFDDETVEKIDE 278 (300)
T ss_pred ceecCceEecCcEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEEC--CCcEEEEcCCceEEcCH
Confidence 579999999999999998865544446899999999999988999999999998 88999999999999984
No 11
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.69 E-value=5.1e-17 Score=177.84 Aligned_cols=73 Identities=36% Similarity=0.728 Sum_probs=64.8
Q ss_pred ccccCcceecCCcccCCCCcCCC-----------CCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCccee
Q 004117 2 KKKITSPFCFPGELNMQRRLSEP-----------SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVS 70 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~~-----------~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~ 70 (773)
+.|+++.|.||.+|||.+|+... ......|+|+|||+|.|+ +++|||+++||+..++.||.|||+.|+
T Consensus 212 ~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~vk~~~~~~W~~~nD~~V~ 290 (334)
T cd02659 212 RIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGD-AHGGHYYSYIKDRDDGKWYKFNDDVVT 290 (334)
T ss_pred ceeCCceEeCCceecCccccccccccccccccccCCCCeeEEEEEEEEecCC-CCCCCeEEEEECCCCCceEEEeCcccE
Confidence 57999999999999999998653 223688999999999997 899999999998778999999999999
Q ss_pred eeCCC
Q 004117 71 NLGHH 75 (773)
Q Consensus 71 ~~~~~ 75 (773)
+++..
T Consensus 291 ~i~~~ 295 (334)
T cd02659 291 PFDPN 295 (334)
T ss_pred ECCHH
Confidence 99854
No 12
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.67 E-value=6e-17 Score=167.85 Aligned_cols=62 Identities=32% Similarity=0.608 Sum_probs=56.5
Q ss_pred CccccCcceecCCcccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCC
Q 004117 1 MKKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 1 ~rkKi~~~i~FP~~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~ 74 (773)
++.|+++.|.||.+| ....|+|+|||+|.|. +++|||+|||++..+++||+|||+.|++++.
T Consensus 145 ~~~Ki~~~v~FP~~l-----------~~~~Y~L~aVi~H~G~-~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~ 206 (228)
T cd02665 145 RPEKIHDKLEFPQII-----------QQVPYELHAVLVHEGQ-ANAGHYWAYIYKQSRQEWEKYNDISVTESSW 206 (228)
T ss_pred ccEECCEEEEeeCcc-----------CCceeEEEEEEEecCC-CCCCEEEEEEEcCCCCEEEEEECCeeEEcCH
Confidence 368999999999987 1468999999999999 8999999999987789999999999999984
No 13
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.66 E-value=1.2e-16 Score=181.70 Aligned_cols=72 Identities=25% Similarity=0.463 Sum_probs=64.6
Q ss_pred ccccCcceecCCc-ccCCCCcCCC---CCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeC
Q 004117 2 KKKITSPFCFPGE-LNMQRRLSEP---SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 73 (773)
Q Consensus 2 rkKi~~~i~FP~~-LDm~~~~~~~---~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~ 73 (773)
++|+++.|.||.. |||++|+..+ ......|+|+|||+|.|+.+++|||+|||++..+|+||+|||+.|++++
T Consensus 350 ~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~ 425 (440)
T cd02669 350 KEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVL 425 (440)
T ss_pred cccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcC
Confidence 6899999999996 8999999643 2347899999999999996699999999998778999999999999998
No 14
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.63 E-value=3.3e-16 Score=171.82 Aligned_cols=66 Identities=32% Similarity=0.653 Sum_probs=59.3
Q ss_pred ccccCcceecCCcccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCCC
Q 004117 2 KKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 75 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~~ 75 (773)
+.|+++.|.||.+|||.++..... ...|+|+|||+|.|.++++|||+|||| ||+|||+.|+.++.+
T Consensus 245 ~~Ki~~~v~fp~~L~~~~~~~~~~--~~~Y~L~~VI~H~G~~~~~GHY~a~vr------W~~fdD~~V~~~~~~ 310 (332)
T cd02671 245 LSKVNTPLLTPLKLSLEEWSTKPK--NDVYRLFAVVMHSGATISSGHYTAYVR------WLLFDDSEVKVTEEK 310 (332)
T ss_pred ceecCccccCccccccccccCCCC--CCeEEEEEEEEEcCCCCCCCeEEEEEE------EEEEcCcceEEccHH
Confidence 579999999999999998865543 689999999999998789999999999 999999999999843
No 15
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1e-16 Score=178.94 Aligned_cols=100 Identities=27% Similarity=0.495 Sum_probs=73.7
Q ss_pred CcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCCCCCCCCCCCCCCcccccCCcccCCccccccccC
Q 004117 28 DLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSGSKVVRSEPVVCQPVSERVEGAN 107 (773)
Q Consensus 28 ~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 107 (773)
++.|+|++|.+|.|+ |.+|||+|||||...+.||.|||..|+-++...+ ...||+.+.+
T Consensus 367 ~~~yelf~imihsg~-a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i-------------~~sfgg~~~~------- 425 (1203)
T KOG4598|consen 367 DNVYELFSVMVHSGN-AAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEI-------------EKSFGGHPSG------- 425 (1203)
T ss_pred ccHHHhhhhheecCC-CCCceeeeeecccCcCceEEecCccccccCHHHH-------------HHhhCCCCCC-------
Confidence 689999999999999 8999999999999999999999999999884322 1223311111
Q ss_pred CCCcccCCCCccccCCCccccccCCceEEEEEEecCcccccccccccccccchhhhhhhhccCCCCCcchhHHHHHHHH
Q 004117 108 ENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNMEIESEMIFFNDDIFLPSHLGKDIKEL 186 (773)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~l~~~V~~~ 186 (773)
-.-++++||||||++.+...+.- + ...-.+|.|++....+.
T Consensus 426 -------------------~~~s~tnaymlmyr~id~krn~~----~---------------~~~~~~p~hik~~~~k~ 466 (1203)
T KOG4598|consen 426 -------------------WNQSNTNAYMLMYRRIDPKRNAR----F---------------ILSNQLPQHIKDSQEKW 466 (1203)
T ss_pred -------------------ccccCcchhhhhhhhcCcccccc----e---------------eecccchHHHHHHHHHH
Confidence 12478999999999998765321 1 12235788887766554
No 16
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.61 E-value=7.1e-16 Score=165.89 Aligned_cols=71 Identities=37% Similarity=0.707 Sum_probs=65.7
Q ss_pred ccccCcceecCCcccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeC
Q 004117 2 KKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 73 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~ 73 (773)
..|+++.|.||.+|||.+|+.........|+|+|||+|.|.++++|||+|++++ .+++||.|||+.|++++
T Consensus 219 ~~Ki~~~v~f~~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~-~~~~W~~~nD~~V~~v~ 289 (304)
T cd02661 219 GGKINKQISFPETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKS-SNGKWYNMDDSKVSPVS 289 (304)
T ss_pred ccccCCeEecCCeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEEC-CCCCEEEEeCCeeEECC
Confidence 579999999999999999998755558999999999999998899999999998 57899999999999998
No 17
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.61 E-value=8.6e-16 Score=167.78 Aligned_cols=71 Identities=41% Similarity=0.725 Sum_probs=62.8
Q ss_pred ccccCcceecCCcccCCCCcCC---------CCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeee
Q 004117 2 KKKITSPFCFPGELNMQRRLSE---------PSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNL 72 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~---------~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~ 72 (773)
..|+++.|.||.+|||.+|+.. .......|+|+|||+|.|+ +++|||+||+++. +++||.|||+.|+++
T Consensus 235 ~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~~~~~~~-~~~W~~~nD~~V~~~ 312 (328)
T cd02660 235 SRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGT-LDTGHYTAYCRQG-DGQWFKFDDAMITRV 312 (328)
T ss_pred CcCCCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeecc-CCCCcEEEEEECC-CCcEEEEECCeeEEC
Confidence 4799999999999999999874 2234789999999999998 7899999999984 589999999999999
Q ss_pred CC
Q 004117 73 GH 74 (773)
Q Consensus 73 ~~ 74 (773)
+.
T Consensus 313 ~~ 314 (328)
T cd02660 313 SE 314 (328)
T ss_pred CH
Confidence 83
No 18
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.59 E-value=1.4e-15 Score=159.58 Aligned_cols=60 Identities=30% Similarity=0.695 Sum_probs=54.7
Q ss_pred ccccCcceecCCcccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcC--------------------CCCcE
Q 004117 2 KKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDE--------------------NTGQW 61 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~--------------------~~~~W 61 (773)
..|+++.|.||.+| ....|+|+|||+|.|+. ++|||+||+|++ ..+.|
T Consensus 145 ~~K~~~~v~fp~~l-----------~~~~Y~L~avi~H~G~~-~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W 212 (240)
T cd02662 145 STKNSCKVSFPERL-----------PKVLYRLRAVVVHYGSH-SSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPW 212 (240)
T ss_pred eeeeccEEECCCcc-----------CCceEEEEEEEEEeccC-CCceEEEEEeCCCcccccccccccccccccCccCCCE
Confidence 46999999999998 26899999999999995 999999999986 35899
Q ss_pred EEEcCcceeeeC
Q 004117 62 WEFDDEHVSNLG 73 (773)
Q Consensus 62 ~~FdD~~V~~~~ 73 (773)
|+|||+.|++++
T Consensus 213 ~~fnD~~V~~v~ 224 (240)
T cd02662 213 WRISDTTVKEVS 224 (240)
T ss_pred EEEechheEEeC
Confidence 999999999998
No 19
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.58 E-value=2.7e-15 Score=156.42 Aligned_cols=71 Identities=38% Similarity=0.825 Sum_probs=60.2
Q ss_pred ccccCcceecC-CcccCCCCcCCCCC---CCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeC
Q 004117 2 KKKITSPFCFP-GELNMQRRLSEPSQ---LDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 73 (773)
Q Consensus 2 rkKi~~~i~FP-~~LDm~~~~~~~~~---~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~ 73 (773)
.+|+...|.|| .+|||.+++..... ....|+|.|||+|.| ++++|||+|||++..+++||.|||+.|++++
T Consensus 178 ~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~ 252 (269)
T PF00443_consen 178 SKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG-SADSGHYVAYVRDSDDGKWYKFDDSRVTEVS 252 (269)
T ss_dssp EEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES-STTSEEEEEEEEETTTTEEEEEETTEEEEES
T ss_pred ccccccccccCchhhhhhhhhccccccccccceeeehhhhcccc-ccccceEEEeeccccCCeEEEeeCCceEECC
Confidence 47999999999 79999999877553 368999999999999 5899999999999777789999999999998
No 20
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.56 E-value=7.3e-15 Score=152.02 Aligned_cols=72 Identities=35% Similarity=0.673 Sum_probs=62.6
Q ss_pred ccccCcceecCC-cccCCCCcCC-CCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCC
Q 004117 2 KKKITSPFCFPG-ELNMQRRLSE-PSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 2 rkKi~~~i~FP~-~LDm~~~~~~-~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~ 74 (773)
+.|+++.|.||. .|||.+|+.. .......|+|+|||+|.|.. ++|||+|+++...++.||.|||+.|++++.
T Consensus 143 ~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~-~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~ 216 (230)
T cd02674 143 TRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSL-NGGHYTAYCKNNETNDWYKFDDSRVTKVSE 216 (230)
T ss_pred cccCCceEeccccccccccccCcccCCCCceEEEEEEEEeeCCC-CCcEEEEEEECCCCCceEEEcCCeEEEcCH
Confidence 579999999995 6999998633 23347899999999999996 999999999987669999999999999983
No 21
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.53 E-value=1.2e-14 Score=157.89 Aligned_cols=61 Identities=46% Similarity=0.699 Sum_probs=54.5
Q ss_pred ccccCcceecCCcccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcC--CCCcEEEEcCcceeeeC
Q 004117 2 KKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDE--NTGQWWEFDDEHVSNLG 73 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~--~~~~W~~FdD~~V~~~~ 73 (773)
.+|++..|.||.+| ....|+|+|||+|.|.++++|||+||+|.. .+++||.|||+.|++++
T Consensus 234 ~~Ki~~~v~~p~~l-----------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~ 296 (311)
T cd02658 234 PKKLDVPIDVPEEL-----------GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQ 296 (311)
T ss_pred eEeeccccccCCcC-----------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECC
Confidence 46899999999877 257899999999999989999999999985 35899999999999998
No 22
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.8e-14 Score=177.06 Aligned_cols=608 Identities=20% Similarity=0.129 Sum_probs=281.5
Q ss_pred CccccCcceecCCcccCCCCcCC----CCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCCCC
Q 004117 1 MKKKITSPFCFPGELNMQRRLSE----PSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHP 76 (773)
Q Consensus 1 ~rkKi~~~i~FP~~LDm~~~~~~----~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~~~ 76 (773)
++.||++++.||..|+|.+|+.. .++..+.|+|+||++|.|. +++|||++|+++...++|++|||..|+.++..+
T Consensus 377 ~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~-~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~ 455 (1093)
T KOG1863|consen 377 QKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGD-AHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKE 455 (1093)
T ss_pred ceeehhhccCCccccccchhccccchhhhhccceeccchhhccccc-ccCccceeeecchhhccceeccCceeeeccHHH
Confidence 46799999999999999999874 1233469999999999777 899999999999999999999999999998543
Q ss_pred CCCCCCCCCCcccccCCcccCCccccccccCCCCcccCCCCccccCCCccccccCCceEEEEEEecCccccccccccccc
Q 004117 77 FGEGSSSSGSKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHD 156 (773)
Q Consensus 77 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~~~~~~~~~~ 156 (773)
+-+ .++| ++... ........+||||+|.|.+....- +.+
T Consensus 456 ~l~------------~~~g----~~~~~--------------------~~~~~~~~~~~~lv~~~~s~~~~~-----~~~ 494 (1093)
T KOG1863|consen 456 ALE------------QNYG----TEEIE--------------------LSSTADFKNAYMLVYIRDSCESKI-----LKD 494 (1093)
T ss_pred HHH------------hhCC----Ccchh--------------------hhcccccCCcceEEEEecCcHHhh-----hcc
Confidence 222 2222 00000 000112233999999998865311 110
Q ss_pred ccchhhhhhhhccCCCCCcchhHHHHHHHHHHHH-----------------------------------hhhHHHHHHHH
Q 004117 157 VNNMEIESEMIFFNDDIFLPSHLGKDIKELNRSY-----------------------------------LDGCEQFKLRK 201 (773)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~lP~~l~~~V~~~N~~~-----------------------------------~~~~e~~~~~k 201 (773)
. ..-.+|.++.+....+...- +...+++...|
T Consensus 495 v-------------~e~~i~~~l~~~~~~e~~~~~~k~k~~~~~~l~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~r 561 (1093)
T KOG1863|consen 495 I-------------SESSIPYHLSETLQKEKYKTEEKDKELEEARLSAVIRALSDDQLIKQHGFDVEDELYEPEQYRTLR 561 (1093)
T ss_pred c-------------chhhccHHHHHHhhhhhhhhhhhhhhhHHhhhhhhhhccCccchhhhccchHhhhhcccccchHHH
Confidence 0 00112233332222221111 11233333333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeHHHHHHhhhc-cCCCCCCCccccccCCCCCCCCccccccccHHHHH
Q 004117 202 NRELDCISERKQEVRSLLSEAPVPSLEEPFYWISSDWLRQWADK-IFPSTLDNTSIQCLHGKVPESKIGSMKRISSKAWN 280 (773)
Q Consensus 202 ~~~~~~~~Err~~v~~i~~~~~~~~~~~~~~~Is~~WL~~W~~~-~~PgpIdNs~~lC~Hg~l~p~k~~~~k~Vs~~aw~ 280 (773)
....+.+.+... .+......+...+..+|.-..|+ .. ..+...+|..-+|.|+...+.++.. .+--.|.
T Consensus 562 ~~~~~~~~eli~---~~~~~~~~~~~~~~~~w~~~~r~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~---~~~~~~l 631 (1093)
T KOG1863|consen 562 AAKIEELSELIT---RLLGEFELPPSVQPRLWPLGYRN----NLTVLPQYLFNIAPLRSYILDITEKVLN---DLWHEYL 631 (1093)
T ss_pred HHhhhhHHHHHH---HHHhhccCCccccchhhhhhccc----cceEeeecccccchhhhhhhhhhhhhcc---chHHHHH
Confidence 333333333222 23333333333244555555554 22 2345788999999999888876443 4445555
Q ss_pred HHHHHcCCCCCCCCcccchhhHhhcchhhhhhhHHHHHHHHHHHHHHhhhcCCccCceEEEehHHHHHHHhccCCCCCCC
Q 004117 281 KFFFKYNGGPALTNDDYCMTCLIDGAHTVVCADSYRDRRKSLKGLADDVLSGKLVEGTYYVSKSWLQQWTRRKNLDAPSE 360 (773)
Q Consensus 281 ~L~~~ygGgP~l~~~~~C~~C~~~~~~~~~~~~~l~~rr~~~k~l~~~~~~~~~~~~~y~ISk~WLr~W~k~k~~~~P~~ 360 (773)
.++...-|++.+.. .+... ..+.. .+.......+.....++-...|...|+.......+..
T Consensus 632 ~~~~~~~~~~~~~~-----~~~~~------------~~~~~--~lf~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 692 (1093)
T KOG1863|consen 632 ELAVEEIGGNEVRR-----LPSFQ------------FTRDL--LLFLKMYDDRKRSVTPSGELAYLALTPLRLLQVLLNE 692 (1093)
T ss_pred HHHhhhcCcccccc-----ccccc------------chHHH--HHHHHHhccccccccchhhccccccCchhhhhhhhhh
Confidence 55555555554332 11110 00000 0000000001111112222222222211000000000
Q ss_pred CCCCCCceeecCCCCcCCCccCCCceeeeCHHHHHHHHHhhcccCCCCCCCCccCC-CCCCCchhhHHHhhhhhhHHHHH
Q 004117 361 ADGGPTTSIRCPHGQLMPEKAGGAKRLLVPEILWLFIYEDAMKVKPDDLLGCSTFP-LDSEECPECSDALSEVACLEDSI 439 (773)
Q Consensus 361 idn~~n~di~C~HG~L~~~~~~~~~~~~I~~~~W~~L~~~f~~v~p~~~~g~~~f~-~~~~~C~~C~~~~~~~~~~e~~~ 439 (773)
..+..-.+-++.+..+.+.+....+.....+..|..-... ++...-...++ .+...+..|..+..+....+...
T Consensus 693 ~~~~~~d~~~~~~~e~~~~~~~~id~~~~~~~~~~~~~~d-----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1093)
T KOG1863|consen 693 LIGVVDDTSTREYSELKEEKDERIDKIAEEKSFDLSELED-----GDISVVEEEAASKDSESNRADVSEFLENVENRTLQ 767 (1093)
T ss_pred hcccCCccchHHHHHhcchhhhcchhhhhhhhhhhhhhhc-----CCeeeecccccCCcccccccchHHHHHHHHHHHHH
Confidence 0000001112222223222211122222222222222211 11100001111 23444444444433221111111
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCeEEEechHHHHHHHHhcCCCCCCCC-CCCCccccccccceeeccccccccCCCc
Q 004117 440 RARKLKERQNHEKLALGKSIPLSLDCKYYLLPSTWLTKWRNYISPSGKNAS-SIEPEILDGVIDSLKCEKHLRLLERPPD 518 (773)
Q Consensus 440 r~~~~~~r~~l~~l~~~k~~~~~~~~~~y~Vp~~wl~~Wr~fv~~~~~~~~-~~~P~~id~~~~~llC~~H~~Ll~~p~~ 518 (773)
+-++.. ...+.. ...+..-..+-.-+..++-+|+.-+........ ...|-...-....++|..+.+++..+..
T Consensus 768 ~~~~~~--~~~~~~----~f~l~~~~~~~~~~~~~~v~~~l~~~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 841 (1093)
T KOG1863|consen 768 RFRKVS--SEIEEN----SFVLGRQQRVTECILAVLVQLALGKDPISIDSDRAEYDLEKIRFNGTVKLSQVLLDATQLVR 841 (1093)
T ss_pred HHhccc--cccccc----ccccchhhhhhhhHHHHHHHHHhcCCchhccccccCCchhhccccCcceeeccccccccccc
Confidence 111100 000000 111111112223345677777766654443311 2222223333466788444444433322
Q ss_pred cccccCcccccCCCCCCeeeeCHHHHHHHHHHhcCCccccEEE-EEeecCCCCCcccCcccccccCCCCCCCCCCccccc
Q 004117 519 LVCKRGSIYQKGSATDGLTIVTENDWKWFCEEWGGIKEKGLSV-IVDFSNNAGNELVGSCKEILLSEEPCGPRDEENNEI 597 (773)
Q Consensus 519 ~~~~~g~~~q~~~~~~~~~~I~e~eW~~l~~~y~~~~~~~i~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 597 (773)
....+.-.....-.+..+.++-..+|+++...|+.+...++.. ++..... ...+. .++.......+.+ ....
T Consensus 842 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~---~~i~~--d~~~~~~~~~~~~--~~~~ 914 (1093)
T KOG1863|consen 842 DPRERFVSLLKVQFVLPKTIVELLDLKYFKDEWLVDMENGVEIMTLAVTKL---GTILP--DILREVYDRVPLD--PFKS 914 (1093)
T ss_pred cccccccccceecccCCcceeccccccccchhhhccccccchhhheecccc---chhhH--HHHHHHHhhcccC--cccc
Confidence 2222322222333455678888999999999999888665521 1111100 00111 1111111111111 1122
Q ss_pred ccCCcccccCccchHHHHHhHHHHHHHhhhcccCcceEEEEecCCCCcccccccccCCC-Ccccccccccc--CCCceEE
Q 004117 598 ESQRPVVRTFPEICEDCIGERESCELMQKLNYCDKDISVFLVRGKEAPRSILEASESMF-EPDRRASKRSR--KTRSFVN 674 (773)
Q Consensus 598 ~~~~~~~~~~p~vC~~C~~~~~~~~~~~~~~y~~~~I~V~~v~~~e~~~~~~~as~~~~-~~~~R~S~R~R--~~~~~~~ 674 (773)
+.-.++..+.++++.+|..+...+++.....+.++--.=...++.+++.........+. .-.+..+.+.+ .....+.
T Consensus 915 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~n~~~~~~ 994 (1093)
T KOG1863|consen 915 DAFRLFEVTSMKLYKETSYQKLLEELNQSYQSFELLLRDLFLRGESVPLLEILSSKGAPKLELVIHFSKELVQNIGNELN 994 (1093)
T ss_pred cceeEEeecchHHHHhccchhHHHHHhHHHhhHHhhhcccccccccCcHHHHhhcccccceeehhhcchhhhhhcchhhH
Confidence 22355577888999998888877776554443210000034455666555433332221 22334444444 2335677
Q ss_pred EEecCcccHHHHHHHHHHHhC-CCCCCcEEE-eCCeee
Q 004117 675 LKVSASTSIYQLKMMIWESLG-VVKENQILH-KGQRII 710 (773)
Q Consensus 675 l~vs~~~tv~~lK~~I~e~~g-i~p~~Q~L~-~~G~~L 710 (773)
+.+...+++.++|.+++..++ +.-....++ +.|...
T Consensus 995 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~~~~~ 1032 (1093)
T KOG1863|consen 995 LLIVQGESLKENKDHLFDDLKEVSDELFSVFKHAGASV 1032 (1093)
T ss_pred HHhccchhHHHHHHHHHHHHHHhhHHHhHHHhhhhhhh
Confidence 778899999999999999999 888888775 555333
No 23
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.52 E-value=3.1e-14 Score=146.04 Aligned_cols=73 Identities=38% Similarity=0.791 Sum_probs=64.4
Q ss_pred ccccCcceecCCcccCCCCcCC------CCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCC
Q 004117 2 KKKITSPFCFPGELNMQRRLSE------PSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~------~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~ 74 (773)
..|++..|.||.+|++.+++.. .......|+|+|||+|.|.++++|||+|++++...+.||.|||..|+.++.
T Consensus 158 ~~k~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~ 236 (255)
T cd02257 158 KEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSE 236 (255)
T ss_pred cccCCCeEeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCH
Confidence 4699999999999999988752 223478999999999999988999999999997669999999999999984
No 24
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.50 E-value=2.9e-14 Score=150.01 Aligned_cols=57 Identities=30% Similarity=0.479 Sum_probs=48.7
Q ss_pred cccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCC-CCcEEEEcCcceeeeCC
Q 004117 14 ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN-TGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 14 ~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~-~~~W~~FdD~~V~~~~~ 74 (773)
.++|.+|.. ....|+|+|||+|.|.++++|||+||+|+.. +++||.|||+.|++++.
T Consensus 171 ~~~~~~~~~----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~ 228 (245)
T cd02673 171 EEIMKKYCG----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSK 228 (245)
T ss_pred ccccccccC----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCH
Confidence 355666654 2577999999999998899999999999876 78999999999999983
No 25
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.3e-14 Score=114.72 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=59.2
Q ss_pred CCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 669 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 669 ~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
+.+.+.|+++++|+|.++|+.|+|++||||.+|||+|.|||+ +|+.|.++|++.-||+|||+
T Consensus 9 t~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm-~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQM-NDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred ccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccc-cccccHHHhhhccceeEeeC
Confidence 458899999999999999999999999999999999999999 68899999999999999985
No 26
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.49 E-value=5.3e-14 Score=120.72 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=59.2
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++++|++++||.+||++|++++|||+++|+|+|+|++| +|+.||++|||.+++||||+.+.
T Consensus 9 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L-~D~~tL~~~~i~~~~tl~l~~~l 71 (74)
T cd01793 9 NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPL-EDDATLGQCGVEELCTLEVAGRL 71 (74)
T ss_pred CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeEC-CCCCCHHHcCCCCCCEEEEEEec
Confidence 5789999999999999999999999999999999999999 57799999999999999999653
No 27
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.47 E-value=7.2e-14 Score=148.88 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=61.8
Q ss_pred cccCcceecCCcccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCC----CCcEEEEcCcceeeeC
Q 004117 3 KKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN----TGQWWEFDDEHVSNLG 73 (773)
Q Consensus 3 kKi~~~i~FP~~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~----~~~W~~FdD~~V~~~~ 73 (773)
+|++..+.||..+||..+.........+|+|+|||+|.|.+.++|||+|+||... .++||.|||..|++++
T Consensus 185 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs 259 (268)
T cd02672 185 KVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVS 259 (268)
T ss_pred EecCCeecccccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcC
Confidence 5788899999998887776655555789999999999999779999999999854 6899999999999997
No 28
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.45 E-value=1.3e-13 Score=117.06 Aligned_cols=62 Identities=21% Similarity=0.121 Sum_probs=59.0
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEe
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 732 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~ 732 (773)
++++.|+|++++||.+||.+|++++|||+++|+|+|+|+.| +|+.||++|||.+|+||||.+
T Consensus 8 G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L-~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 8 GKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLL-TDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeEC-CCCCCHHHcCCCCCCEEEEEe
Confidence 47889999999999999999999999999999999999999 578999999999999999985
No 29
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.45 E-value=1.4e-13 Score=118.10 Aligned_cols=63 Identities=29% Similarity=0.277 Sum_probs=59.2
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
++++.|+|++++||.+||++|++++|||+++|+|+|+|++| +|+.||++|||.+|++|||+.+
T Consensus 10 G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L-~d~~~L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 10 GRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKAL-ADDKRLSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEC-CCCCCHHHCCCCCCCEEEEEEc
Confidence 36788999999999999999999999999999999999999 5779999999999999999954
No 30
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.7e-14 Score=160.78 Aligned_cols=69 Identities=42% Similarity=0.727 Sum_probs=61.8
Q ss_pred cccCcceecCCcccCCCCcCCC---C--CCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCC
Q 004117 3 KKITSPFCFPGELNMQRRLSEP---S--QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 3 kKi~~~i~FP~~LDm~~~~~~~---~--~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~ 74 (773)
.|+.+.|.||..|+|.+|+..+ + ..++.|+|+|||+|+|+ .++|||+||.+. .+.||+|||+.|+.++.
T Consensus 395 ~ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~-~~SGHY~aY~r~--~~~~~~~dDs~v~~~s~ 468 (492)
T KOG1867|consen 395 EKIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGT-VGSGHYVAYRRQ--SGGWFKCDDSTVTKVSE 468 (492)
T ss_pred cccCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccC-CCCCceEEEEEe--CCCcEEEcCeEEEEeeH
Confidence 3999999999999999998742 2 23799999999999999 999999999996 78899999999999984
No 31
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=8.9e-14 Score=155.41 Aligned_cols=72 Identities=29% Similarity=0.502 Sum_probs=65.1
Q ss_pred ccccCcceecCC-cccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCC
Q 004117 2 KKKITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 2 rkKi~~~i~FP~-~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~ 74 (773)
|.||.+-|.||. .|||+.|+..-......|+|+||=.|.|. ..+|||+||+|+..+++||.|||+.|+++++
T Consensus 734 rdKiddlVeyPiddldLs~~~~~~~~p~liydlyavDNHygg-lsgGHYtAyarn~~n~~wy~fdDsritevdp 806 (823)
T COG5560 734 RDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGG-LSGGHYTAYARNFANNGWYLFDDSRITEVDP 806 (823)
T ss_pred hhhhhhhhccccccccccceEEeecCcceEEEeeeccccccc-cCCcceeeeeecccCCceEEecCccccccCc
Confidence 679999999995 79999987654444599999999999999 8999999999999999999999999999984
No 32
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.42 E-value=3.4e-13 Score=114.82 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=58.2
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
++++.|+|++++||.+||.+|++++|||+++|+|+|+|++|.||..||++|||.+|++|+|.
T Consensus 9 g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 9 ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 36789999999999999999999999999999999999999666689999999999999986
No 33
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3.2e-14 Score=125.58 Aligned_cols=67 Identities=25% Similarity=0.243 Sum_probs=63.6
Q ss_pred cCCCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 667 RKTRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 667 R~~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
|.+++++.|+|++++||..||++|+.++||||++|+|+|+||+| +|+.||++|||+..||||++...
T Consensus 7 ~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~L-ED~~Tla~Y~i~~~~Tl~~~~rL 73 (128)
T KOG0003|consen 7 TLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL 73 (128)
T ss_pred EeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhccccc-ccCCcccccCccchhhhhhhHHH
Confidence 46779999999999999999999999999999999999999999 79999999999999999999755
No 34
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.39 E-value=6.2e-13 Score=113.75 Aligned_cols=60 Identities=27% Similarity=0.308 Sum_probs=57.2
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
+.+.++|++++||.+||.+|++++|+||++|||+|+|+.| +|+.||++|||.+|++|||-
T Consensus 12 k~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L-~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 12 KKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIF-KDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCC-CCCCCHHHcCCCCCCEEEEE
Confidence 6788999999999999999999999999999999999999 57789999999999999985
No 35
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.39 E-value=7.2e-13 Score=112.40 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=58.7
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEe
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 732 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~ 732 (773)
++++.++|++++||.+||.+|++++|+|+.+|+|+|+|++| +|+.||++|||.+|+||||+.
T Consensus 8 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L-~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 8 GHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKEL-RNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeEC-CCCCcHHHcCCCCCCEEEEEe
Confidence 36789999999999999999999999999999999999999 577999999999999999984
No 36
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.36 E-value=1.4e-12 Score=112.00 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=58.7
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
++++|+|++++||.+||.+|++..|||+++|+|+|+|++|. |+.||++|||.+|++|+|...
T Consensus 9 ~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~-D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 9 RSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPME-DEHPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred CEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCCHHHcCCCCCCEEEEEEE
Confidence 67899999999999999999999999999999999999994 779999999999999999854
No 37
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.35 E-value=1.3e-12 Score=112.31 Aligned_cols=60 Identities=20% Similarity=0.175 Sum_probs=57.1
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCC-CCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIF-PGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~-~~~~l~l~ 731 (773)
+++.|+|++++||.+||.+|++++||||++||| |+|++|.+|++||++|||. +|++|||-
T Consensus 13 ~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 13 VTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 788999999999999999999999999999999 9999997788999999999 88999985
No 38
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.33 E-value=2.4e-12 Score=117.50 Aligned_cols=63 Identities=22% Similarity=0.168 Sum_probs=59.5
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.|+|++++||.+||.+|++++|||+++|+|+|+|+.| +|+.||++|||.+|+||||+...
T Consensus 38 ~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L-~D~~tL~dy~I~~~stL~l~~~l 100 (103)
T cd01802 38 TCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMEL-EDEYCLNDYNISEGCTLKLVLAM 100 (103)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEec
Confidence 6789999999999999999999999999999999999999 57799999999999999999654
No 39
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.32 E-value=1.6e-12 Score=110.70 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHHHh--CCC-CCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEe
Q 004117 679 ASTSIYQLKMMIWESL--GVV-KENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 732 (773)
Q Consensus 679 ~~~tv~~lK~~I~e~~--gi~-p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~ 732 (773)
+++||.+||++|++++ ||+ |++|||+|+||+| +|+.||++|||.+|++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL-~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKL-KDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCC-CCCCcHHHcCCCCCCEEEEEe
Confidence 6899999999999995 685 9999999999999 688999999999999999984
No 40
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.32 E-value=3.1e-12 Score=110.96 Aligned_cols=61 Identities=23% Similarity=0.183 Sum_probs=57.4
Q ss_pred EEEE-ecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 673 VNLK-VSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 673 ~~l~-vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+.|+ |++++||.+||.+|++++|||+++|+|+|+||+| +|+.||++|||.+|++|+|++..
T Consensus 14 ~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L-~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 14 RTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQM-EDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred EEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEEC-CCCCCHHHcCCCCCCEEEEEEec
Confidence 5785 8999999999999999999999999999999999 68899999999999999999765
No 41
>PTZ00044 ubiquitin; Provisional
Probab=99.31 E-value=3.5e-12 Score=109.77 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=59.7
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++++++|++++||.+||.+|++..|||+++|+|+|+|++| +|+.||++|||.+|++|||....
T Consensus 10 G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L-~d~~~l~~~~i~~~~~i~l~~~~ 73 (76)
T PTZ00044 10 GKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQM-SDDLKLSDYKVVPGSTIHMVLQL 73 (76)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEc-cCCCcHHHcCCCCCCEEEEEEEc
Confidence 36789999999999999999999999999999999999999 58889999999999999998643
No 42
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.31 E-value=4.5e-12 Score=106.90 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=59.4
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
+.+.|+|.+++||.+||.+|++..|+||++|+|+|+|+.| +|+.||++|||.+|++|+|+..
T Consensus 6 ~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L-~d~~tL~~~~i~~~~~I~l~~k 67 (69)
T PF00240_consen 6 KTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKEL-DDDKTLSDYGIKDGSTIHLVIK 67 (69)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEE-STTSBTGGGTTSTTEEEEEEES
T ss_pred cEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecc-cCcCcHHHcCCCCCCEEEEEEe
Confidence 5899999999999999999999999999999999999999 7889999999999999999864
No 43
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.31 E-value=4e-12 Score=109.69 Aligned_cols=65 Identities=25% Similarity=0.304 Sum_probs=60.3
Q ss_pred CCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 669 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 669 ~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.++++.|+|++++||.+||.+|++..||||++|+|+|+|+.| +|+.||++|||.+|++|+|+...
T Consensus 6 ~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L-~d~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 6 NGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFI-KDSNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEc-CCCCcHHHcCCCCCCEEEEEEec
Confidence 347889999999999999999999999999999999999999 57799999999999999999654
No 44
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.8e-12 Score=149.12 Aligned_cols=71 Identities=35% Similarity=0.607 Sum_probs=61.6
Q ss_pred ccccCcceecCC-cccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeC
Q 004117 2 KKKITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 73 (773)
Q Consensus 2 rkKi~~~i~FP~-~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~ 73 (773)
+.|....+.||. .+|+.++..........|+|+||+.|.|+ .++|||+|++++...+.||.|||+.|+.+.
T Consensus 558 ~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gt-l~sGHYta~~~~~~~~~W~~fdDs~Vs~~~ 629 (653)
T KOG1868|consen 558 FNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGT-LNSGHYTAYVYKNEKQRWFTFDDSEVSPIS 629 (653)
T ss_pred ccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCc-ccCCceEEEEeecCCCceEEecCeeeeccc
Confidence 467788899996 68888877776666777999999999996 899999999998788999999999999665
No 45
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.7e-12 Score=123.28 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=60.3
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.++|++++||..+|++||+++||||+||||||.|+|| +|..||.||||+..+||||+...
T Consensus 10 ~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qL-edgrtlSDY~Iqkestl~l~l~l 73 (156)
T KOG0004|consen 10 GKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 73 (156)
T ss_pred ccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhccc-ccCCccccccccccceEEEEEEe
Confidence 36899999999999999999999999999999999999999 67799999999999999999653
No 46
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.27 E-value=6.2e-12 Score=138.44 Aligned_cols=46 Identities=39% Similarity=0.689 Sum_probs=43.1
Q ss_pred CcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCC
Q 004117 28 DLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 28 ~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~ 74 (773)
.+.|+|+|||+|.|. +++|||++|+++..++.||+|||+.|++++.
T Consensus 278 ~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~ 323 (343)
T cd02666 278 SYGYRLHAVFIHRGE-ASSGHYWVYIKDFEENVWRKYNDETVTVVPA 323 (343)
T ss_pred CCceEEEEEEEeecC-CCCCeEEEEEEECCCCeEEEEECCeeEEecH
Confidence 688999999999999 5999999999998789999999999999983
No 47
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.26 E-value=1e-11 Score=105.67 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=55.8
Q ss_pred EEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEe
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 732 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~ 732 (773)
..|+|++++||.+||.+|++++||++.+|+|+|+|++| +|+.||++|||.+|++|||+.
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L-~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKIL-KDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEc-CCCCcHHHcCCCCCCEEEEEE
Confidence 37899999999999999999999999999999999999 577899999999999999984
No 48
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.26 E-value=1.3e-11 Score=105.89 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=58.9
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.++|++++||.+||.+|+++.|+||..|+|+|+|+.| +|+.||++|||.+|++|||+...
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L-~d~~tl~~~~i~~g~~i~l~~~~ 73 (76)
T cd01806 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQM-NDDKTAADYKLEGGSVLHLVLAL 73 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEc-cCCCCHHHcCCCCCCEEEEEEEc
Confidence 5678999999999999999999999999999999999999 57789999999999999999654
No 49
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.7e-12 Score=154.69 Aligned_cols=69 Identities=35% Similarity=0.631 Sum_probs=64.3
Q ss_pred ccccCcceecCC-cccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeC
Q 004117 2 KKKITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 73 (773)
Q Consensus 2 rkKi~~~i~FP~-~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~ 73 (773)
+.|+.+.+.||. .|||++|+..+.+ ..|+|+||..|.|. +.+|||+||+|+..+++||.|||..|++++
T Consensus 755 ~~k~~~~v~fPi~~ld~s~~~~~~~~--~~Y~l~av~nHyG~-l~~GHYta~~k~~~~~~w~~fdDs~v~~~~ 824 (842)
T KOG1870|consen 755 SSKVKTKVEFPLGSLDLSEFVVNKEQ--VLYDLYAVGNHYGQ-LSGGHYTAYAKNVGDGKWYLFDDSSVSEVD 824 (842)
T ss_pred hhhhCccccCCCcCCCcchhhccCcc--ceeeeeeeecccCC-cCCcchhhhhhcCCCCceEEeccccCCCCC
Confidence 468999999996 7999999998775 99999999999999 899999999999889999999999999977
No 50
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.24 E-value=1.8e-11 Score=105.58 Aligned_cols=64 Identities=25% Similarity=0.249 Sum_probs=59.5
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCC--CCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGV--VKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi--~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++++|| |+++|+|+|+|+.| +|+.||++|||.+|++|+|.+..
T Consensus 10 g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L-~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 10 QQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKIL-KDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEc-cCCCCHHHcCCCCCCEEEEEEec
Confidence 367899999999999999999999999 99999999999999 57789999999999999998754
No 51
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=99.24 E-value=7.2e-12 Score=110.65 Aligned_cols=72 Identities=36% Similarity=0.778 Sum_probs=59.8
Q ss_pred CCCCcEEEeHHHHHHhhhccC------CCCCCCccccccCC--CCCCCCc--cccccccHHHHHHHHHHcCCCCC-CCCc
Q 004117 227 LEEPFYWISSDWLRQWADKIF------PSTLDNTSIQCLHG--KVPESKI--GSMKRISSKAWNKFFFKYNGGPA-LTND 295 (773)
Q Consensus 227 ~~~~~~~Is~~WL~~W~~~~~------PgpIdNs~~lC~Hg--~l~p~k~--~~~k~Vs~~aw~~L~~~ygGgP~-l~~~ 295 (773)
+++..|+||.+|+++|.++.. ||||||++|+|.|+ .|.+... ..+..||+++|++|+++|||||. +...
T Consensus 3 ~g~~~yiIs~~W~~~~~~~~~~~~~~~pGpIdN~~l~~~~~~~~lk~~l~~~~dy~~V~~~vW~~l~~~YGggp~~i~R~ 82 (86)
T smart00695 3 EGDTWYLISTRWYRQWADFVEGKDGKDPGPIDNSGILCSHGGPRLKEHLVEGEDYVLIPEELWNKLVSWYGGGPGPIPRK 82 (86)
T ss_pred CCCEEEEEeHHHHHHHHHHhCCCCCCCCCCCCcHHhcCCCCCcccccccccCCCEEEeCHHHHHHHHHHHCCCCccceEE
Confidence 356789999999999998876 99999999999998 5555433 34567999999999999999995 6665
Q ss_pred ccc
Q 004117 296 DYC 298 (773)
Q Consensus 296 ~~C 298 (773)
.+|
T Consensus 83 ~i~ 85 (86)
T smart00695 83 VVC 85 (86)
T ss_pred eec
Confidence 555
No 52
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.23 E-value=1.5e-11 Score=104.31 Aligned_cols=62 Identities=21% Similarity=0.202 Sum_probs=58.2
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEe
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 732 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~ 732 (773)
++...++|++++||.+||.+|++.+||||+.|+|+|+|+.| +|++||.+|||.+|++|+|+.
T Consensus 9 g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l-~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 9 GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKER-DDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCccc-CccCcHHHcCCCCCCEEEEec
Confidence 46678999999999999999999999999999999999999 577999999999999999984
No 53
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.22 E-value=2.1e-11 Score=104.59 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=59.0
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.| +|+.||++|||.+|++|||....
T Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L-~d~~~L~~~~i~~~~~i~l~~~~ 73 (76)
T cd01803 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 73 (76)
T ss_pred CEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEEc
Confidence 6678999999999999999999999999999999999999 57789999999999999999653
No 54
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.22 E-value=2.6e-11 Score=102.88 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=57.8
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEe
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 732 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~ 732 (773)
+++.+.|++++||.+||.+|++..||||..|+|+|+|+.| +|+.||++|||.+|++|||+.
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L-~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 11 QTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVL-KDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEEC-CCcCcHHHCCCCCCCEEEEEe
Confidence 6788999999999999999999999999999999999999 577899999999999999984
No 55
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.22 E-value=2.2e-11 Score=105.61 Aligned_cols=62 Identities=26% Similarity=0.259 Sum_probs=57.4
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+...|+|++++||.+||.+|++++|+++++|+|+|+|+.|. |+ ||++|||.+|++|+|+.+.
T Consensus 12 ~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~-d~-~L~~~gi~~~~~i~l~~~~ 73 (78)
T cd01804 12 TRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLS-SG-KLQDLGLGDGSKLTLVPTV 73 (78)
T ss_pred CEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCC-CC-cHHHcCCCCCCEEEEEeec
Confidence 45789999999999999999999999999999999999994 66 9999999999999999544
No 56
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.20 E-value=2.1e-11 Score=106.24 Aligned_cols=63 Identities=19% Similarity=0.257 Sum_probs=58.8
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEE--EeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQIL--HKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L--~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.++|++++||.+||.+|++++|+|+++|+| +|+|+.| +|+.||++|||.+|++|+|+++-
T Consensus 13 ~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L-~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 13 NEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVL-QDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCC-CCCCCHHHcCCCCCCEEEEEEEc
Confidence 678899999999999999999999999999999 8999999 57789999999999999999753
No 57
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.5e-11 Score=125.33 Aligned_cols=63 Identities=25% Similarity=0.482 Sum_probs=52.6
Q ss_pred ceecCCcccCCCCcCCCC---------------CCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeee
Q 004117 8 PFCFPGELNMQRRLSEPS---------------QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNL 72 (773)
Q Consensus 8 ~i~FP~~LDm~~~~~~~~---------------~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~ 72 (773)
.|.+|..||..++..... -.+..|+|.||++|.|+ .++|||+++|+- ++.|+.|||+.|+++
T Consensus 319 ~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~-L~gGHY~s~v~~--~~~W~~~dDs~vr~~ 395 (415)
T COG5533 319 SVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGT-LNGGHYFSEVKR--SGTWNVYDDSQVRKG 395 (415)
T ss_pred EeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecce-ecCceeEEeeee--cCceEEechhheeec
Confidence 456777788877764321 12689999999999999 899999999995 699999999999999
Q ss_pred C
Q 004117 73 G 73 (773)
Q Consensus 73 ~ 73 (773)
+
T Consensus 396 ~ 396 (415)
T COG5533 396 S 396 (415)
T ss_pred c
Confidence 8
No 58
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.11 E-value=1.1e-10 Score=100.21 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=57.1
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEe---CCeeeccccchhhhcCCCCCCEEEEE
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHK---GQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~---~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
++++.|+|++++||.+||.+|++..||||++|+|+| .|+.| .|+.||.+|||.+|+.|+|+
T Consensus 9 g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l-~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 9 GQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPA-EDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcC-CCCcCHHHcCCCCCCEEEEE
Confidence 367889999999999999999999999999999995 99999 57899999999999999997
No 59
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.09 E-value=1.7e-10 Score=99.69 Aligned_cols=61 Identities=10% Similarity=0.007 Sum_probs=54.4
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhC--CCCCCcEEEeCCeeeccccchhhhcC--CCCCCEEEEEe
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLG--VVKENQILHKGQRIIDQECATLADLN--IFPGDKLWVQD 732 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~g--i~p~~Q~L~~~G~~L~~d~~TL~~~~--I~~~~~l~l~~ 732 (773)
..+.+++.+++||.+||++|.+..+ .+|++|||||.||.| .|+.||++++ |..|.|||||-
T Consensus 14 ~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiL-kD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 14 EDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLL-PDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred EEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeec-cchhhHHHHhhcccCCceEEEEe
Confidence 3577788999999999999999985 457999999999999 5789999996 99999999983
No 60
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.5e-10 Score=132.63 Aligned_cols=77 Identities=35% Similarity=0.642 Sum_probs=65.8
Q ss_pred ccccCcceecCCcccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCCCCCCC
Q 004117 2 KKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGE 79 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~~~~~~ 79 (773)
++|+...|.||.+|++...+.........|+|+|||+|.|.+.++|||+||+|+..- .|+.|||+.|+.++..++.+
T Consensus 482 ~~kl~~~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~-nWl~fdD~~V~~~s~~~v~~ 558 (587)
T KOG1864|consen 482 YTKLLYRVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDF-NWLLFDDDNVEPISEEPVSE 558 (587)
T ss_pred ccccccccccccceeeccccccccCccceeeEEEEEEeccCCCCCcceEEEEeeCCC-CceecccccccccCcchhhh
Confidence 378999999999999987777766545899999999999999999999999998433 39999999999999665544
No 61
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.04 E-value=5.6e-10 Score=98.93 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=59.7
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+.++|.+++||..||.++.++.|||+.+|+|+|+|++| ++..|+++|||..||+|+++...
T Consensus 21 g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L-~~~~T~~~l~m~d~d~I~v~l~l 84 (87)
T cd01763 21 GNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRI-RDNQTPDDLGMEDGDEIEVMLEQ 84 (87)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeEC-CCCCCHHHcCCCCCCEEEEEEec
Confidence 47789999999999999999999999999999999999999 57789999999999999998644
No 62
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.98 E-value=5.8e-10 Score=101.40 Aligned_cols=60 Identities=13% Similarity=0.013 Sum_probs=53.7
Q ss_pred EEEecCcccHHHHHHHHH-----HHhCCC--CCCcEEEeCCeeeccccchhhhcC------CCCCCEEEEEecc
Q 004117 674 NLKVSASTSIYQLKMMIW-----ESLGVV--KENQILHKGQRIIDQECATLADLN------IFPGDKLWVQDSE 734 (773)
Q Consensus 674 ~l~vs~~~tv~~lK~~I~-----e~~gi~--p~~Q~L~~~G~~L~~d~~TL~~~~------I~~~~~l~l~~~~ 734 (773)
.+.+++++||.+||++|+ +++|+| +++|+|||+||.| +|+.||++|+ +..+.|+||+++.
T Consensus 19 p~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiL-eD~~TL~d~~~p~g~~~~~~~TmHvvlr~ 91 (113)
T cd01814 19 PKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKIL-ENSKTVGECRSPVGDIAGGVITMHVVVQP 91 (113)
T ss_pred ccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeec-CCCCcHHHhCCcccccCCCceEEEEEecC
Confidence 346789999999999999 666777 9999999999999 5889999999 8888999999887
No 63
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=98.95 E-value=1e-09 Score=90.42 Aligned_cols=55 Identities=33% Similarity=0.399 Sum_probs=51.4
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCC
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGD 726 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~ 726 (773)
+...++|++++||.+||.+|++.+|+|+..|+|+|+|+.|. |++||++|||.+|+
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~-d~~tL~~~~i~~~~ 64 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLE-DDRTLADYNIQDGS 64 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECC-CCCCHHHcCCcCCC
Confidence 46789999999999999999999999999999999999995 67999999999986
No 64
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=98.93 E-value=2.5e-09 Score=96.73 Aligned_cols=91 Identities=23% Similarity=0.424 Sum_probs=51.4
Q ss_pred CCeEEEechHHHHHHHHhcCCCCCCCC-----CCCCccccccccceeeccccccccCCCccccccCcccccCCCCCCeee
Q 004117 464 DCKYYLLPSTWLTKWRNYISPSGKNAS-----SIEPEILDGVIDSLKCEKHLRLLERPPDLVCKRGSIYQKGSATDGLTI 538 (773)
Q Consensus 464 ~~~~y~Vp~~wl~~Wr~fv~~~~~~~~-----~~~P~~id~~~~~llC~~H~~Ll~~p~~~~~~~g~~~q~~~~~~~~~~ 538 (773)
|..+|+||+.|+++|+.||........ ..+|++||| ..|++ .++.....+. .....+-.......++.+
T Consensus 1 G~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~pGpIdN--~~L~~-~~~~~~~~~~---~~~~~Lk~~l~~~~Dy~~ 74 (99)
T PF06337_consen 1 GDKWYLISSKWWRQWKSYVSYDNNDNESDPDSSPRPGPIDN--SDLLD-EDNSQLQFPP---PENYRLKPNLQEGVDYEL 74 (99)
T ss_dssp T-EEEEEEHHHHHHHHHHHTTTTTSTTTTT-GGG---SB-G--GGGEC-CTTT------------TEE-SS--CTTTEEE
T ss_pred CCEEEEECHHHHHHHHHHhCCCCcccccccccCCCCCCEeC--HHHhC-CCCcccccch---hhhhhccccccCCCCEEE
Confidence 457899999999999999987755421 123999997 77777 5543221111 011111112233456999
Q ss_pred eCHHHHHHHHHHhcCCccccEE
Q 004117 539 VTENDWKWFCEEWGGIKEKGLS 560 (773)
Q Consensus 539 I~e~eW~~l~~~y~~~~~~~i~ 560 (773)
|+++.|++|.+.||++++|...
T Consensus 75 v~~~~W~~l~~~Ygggp~I~R~ 96 (99)
T PF06337_consen 75 VPEEVWDYLHSWYGGGPEIKRQ 96 (99)
T ss_dssp EEHHHHHHHHHHH-T----EEE
T ss_pred ECHHHHHHHHHHcCCCCcEEEE
Confidence 9999999999999999987553
No 65
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=9.3e-11 Score=133.86 Aligned_cols=71 Identities=23% Similarity=0.472 Sum_probs=60.5
Q ss_pred cccCcceecCCcccCCCCcCCCCC-----CCcceEEEEEEEeecCCCCCceEEEEEEcC--------------------C
Q 004117 3 KKITSPFCFPGELNMQRRLSEPSQ-----LDLIYDLSAVLIHKGTAVNSGHYIALIKDE--------------------N 57 (773)
Q Consensus 3 kKi~~~i~FP~~LDm~~~~~~~~~-----~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~--------------------~ 57 (773)
.|++..+.|++.+|+.+|+.-..+ ....|+|+|||.|.|+ +..|||+||++.. .
T Consensus 766 ~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgt-m~~ghyvayv~~~t~~~~~~~~~~~~~~sd~~~~ 844 (877)
T KOG1873|consen 766 SKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGT-MSYGHYVAYVRGGTFLDLSAPSNSKDFESDAGIP 844 (877)
T ss_pred hcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceecccc-ccCCcchhhhhccchhhccCccccccchhccCCC
Confidence 488999999999999999754321 3579999999999999 8999999999832 4
Q ss_pred CCcEEEEcCcceeeeCC
Q 004117 58 TGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 58 ~~~W~~FdD~~V~~~~~ 74 (773)
.|+||...|..|.+++.
T Consensus 845 ~~~Wy~iSDs~VrevS~ 861 (877)
T KOG1873|consen 845 SGRWYYISDSIVREVSL 861 (877)
T ss_pred CcceEEecchheecccH
Confidence 57999999999999983
No 66
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=6.2e-10 Score=122.57 Aligned_cols=46 Identities=39% Similarity=0.654 Sum_probs=42.3
Q ss_pred CcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCC
Q 004117 28 DLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 28 ~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~ 74 (773)
...|+|.|||-|+|.|+.+|||+|+++. +.+.|++|||+.|+-+..
T Consensus 401 ~g~y~l~~vithkgrss~sghy~aw~r~-s~~~w~~fdd~~vs~v~~ 446 (473)
T KOG1872|consen 401 SGLYDLQLVITHKGRSSKSGHYVAWNRV-SEDKWGHFDDDMVSFVLG 446 (473)
T ss_pred cceeeeeEeeeccccccCCCcceEEEec-cCCceeeccccccccccc
Confidence 4579999999999999999999999999 466999999999999874
No 67
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=98.88 E-value=6.3e-09 Score=91.88 Aligned_cols=75 Identities=16% Similarity=0.428 Sum_probs=58.4
Q ss_pred CCCeEEEechHHHHHHHHhcCCCCCCCCCCCCccccccccceeeccccccccCCCccccccCcccccCCCCCCeeeeCHH
Q 004117 463 LDCKYYLLPSTWLTKWRNYISPSGKNASSIEPEILDGVIDSLKCEKHLRLLERPPDLVCKRGSIYQKGSATDGLTIVTEN 542 (773)
Q Consensus 463 ~~~~~y~Vp~~wl~~Wr~fv~~~~~~~~~~~P~~id~~~~~llC~~H~~Ll~~p~~~~~~~g~~~q~~~~~~~~~~I~e~ 542 (773)
+|..+|+||+.|+++|..|+..... ++|++||| ..|+| .|++.-..+.. ....++++|+++
T Consensus 3 ~g~~~yiIs~~W~~~~~~~~~~~~~----~~pGpIdN--~~l~~-~~~~~~lk~~l------------~~~~dy~~V~~~ 63 (86)
T smart00695 3 EGDTWYLISTRWYRQWADFVEGKDG----KDPGPIDN--SGILC-SHGGPRLKEHL------------VEGEDYVLIPEE 63 (86)
T ss_pred CCCEEEEEeHHHHHHHHHHhCCCCC----CCCCCCCc--HHhcC-CCCCccccccc------------ccCCCEEEeCHH
Confidence 5778999999999999999984433 58999997 88899 67632111111 123469999999
Q ss_pred HHHHHHHHhcCCcc
Q 004117 543 DWKWFCEEWGGIKE 556 (773)
Q Consensus 543 eW~~l~~~y~~~~~ 556 (773)
.|++|...||++++
T Consensus 64 vW~~l~~~YGggp~ 77 (86)
T smart00695 64 LWNKLVSWYGGGPG 77 (86)
T ss_pred HHHHHHHHHCCCCc
Confidence 99999999999997
No 68
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.88 E-value=5.2e-09 Score=87.48 Aligned_cols=62 Identities=29% Similarity=0.313 Sum_probs=58.3
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEe
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 732 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~ 732 (773)
++.+.+.+.+++||.+||.+|++.+|+|+..|+|+|+|+.| +|+.||++|+|.+|++|++..
T Consensus 7 ~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l-~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 7 GKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKIL-KDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCC-CCcCCHHHCCCCCCCEEEEEE
Confidence 47788999999999999999999999999999999999999 688899999999999999974
No 69
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.83 E-value=6.4e-09 Score=91.56 Aligned_cols=62 Identities=21% Similarity=0.162 Sum_probs=56.4
Q ss_pred EEEEecCcccHHHHHHHHHHHhCCCCCCcEE-EeCCe-----eeccccchhhhcCCCCCCEEEEEecc
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGVVKENQIL-HKGQR-----IIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L-~~~G~-----~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
....+++++||.+||.+|+..+|++|..|+| +|.|+ .|.+|.++|+.|||.+|++||+++..
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~~ 82 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDVS 82 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeCC
Confidence 4567899999999999999999999999999 58888 68899999999999999999999643
No 70
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=98.80 E-value=2.6e-09 Score=96.68 Aligned_cols=66 Identities=24% Similarity=0.558 Sum_probs=44.1
Q ss_pred CCcEEEeHHHHHHhhhcc---------------CCCCCCCccccccCCC-----------CCCCC--ccccccccHHHHH
Q 004117 229 EPFYWISSDWLRQWADKI---------------FPSTLDNTSIQCLHGK-----------VPESK--IGSMKRISSKAWN 280 (773)
Q Consensus 229 ~~~~~Is~~WL~~W~~~~---------------~PgpIdNs~~lC~Hg~-----------l~p~k--~~~~k~Vs~~aw~ 280 (773)
+..|.||++|+++|..+. .||||||++|++.++. |.|.. ......||+++|+
T Consensus 2 ~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~pGpIdN~~L~~~~~~~~~~~~~~~~~Lk~~l~~~~Dy~~v~~~~W~ 81 (99)
T PF06337_consen 2 DKWYLISSKWWRQWKSYVSYDNNDNESDPDSSPRPGPIDNSDLLDEDNSQLQFPPPENYRLKPNLQEGVDYELVPEEVWD 81 (99)
T ss_dssp -EEEEEEHHHHHHHHHHHTTTTTSTTTTT-GGG---SB-GGGGECCTTT---------TEE-SS--CTTTEEEEEHHHHH
T ss_pred CEEEEECHHHHHHHHHHhCCCCcccccccccCCCCCCEeCHHHhCCCCcccccchhhhhhccccccCCCCEEEECHHHHH
Confidence 568999999999999552 1899999999999973 44432 1233469999999
Q ss_pred HHHHHcCCCCCCCC
Q 004117 281 KFFFKYNGGPALTN 294 (773)
Q Consensus 281 ~L~~~ygGgP~l~~ 294 (773)
+|..+|||||.+..
T Consensus 82 ~l~~~Ygggp~I~R 95 (99)
T PF06337_consen 82 YLHSWYGGGPEIKR 95 (99)
T ss_dssp HHHHHH-T----EE
T ss_pred HHHHHcCCCCcEEE
Confidence 99999999998753
No 71
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=5.5e-09 Score=118.64 Aligned_cols=42 Identities=40% Similarity=0.695 Sum_probs=39.2
Q ss_pred CCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCccee
Q 004117 27 LDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVS 70 (773)
Q Consensus 27 ~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~ 70 (773)
..-+|.|.|+|.|+|+|+++|||+||||. .|+|..|||+.|-
T Consensus 703 g~~~Y~L~a~IsHmGts~~sGHYV~hirK--egkWVlfNDeKv~ 744 (763)
T KOG0944|consen 703 GPGKYALFAFISHMGTSAHSGHYVCHIRK--EGKWVLFNDEKVA 744 (763)
T ss_pred CCcceeEEEEEecCCCCCCCcceEEEEee--cCcEEEEcchhhh
Confidence 36799999999999999999999999996 4889999999998
No 72
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.72 E-value=2.4e-08 Score=90.40 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=67.0
Q ss_pred cCCCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCC-------CCCCEEEEEec---ccc
Q 004117 667 RKTRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNI-------FPGDKLWVQDS---EIH 736 (773)
Q Consensus 667 R~~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I-------~~~~~l~l~~~---~~~ 736 (773)
||-|-++-+++..++||.+||.+|+....+||++|||+..+..| +|++||+++|+ +.-.+|-|... +.+
T Consensus 8 rR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvL-eD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d~~f 86 (119)
T cd01788 8 RRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLL-DDGKTLGDCGFTSQTARPQAPATVGLAFRSSDDTF 86 (119)
T ss_pred EecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceee-cccccHHHcCccccccccCCCCeEEEEEecCCCCc
Confidence 55567899999999999999999999999999999999666666 89999999999 77888877765 678
Q ss_pred cCCCccch
Q 004117 737 EHRDIADE 744 (773)
Q Consensus 737 ~~~~~~d~ 744 (773)
|+-+|+.+
T Consensus 87 E~l~I~p~ 94 (119)
T cd01788 87 EPLRIEPF 94 (119)
T ss_pred cceeeeeC
Confidence 88888877
No 73
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.68 E-value=3.1e-08 Score=109.93 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=59.5
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhC---CCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLG---VVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~g---i~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.|+|++++||.+||.+|++..| +++++|+|+|+||.| +|+.||++|||.+|++|+|++..
T Consensus 11 ~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL-~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 11 QKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKIL-SDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEEC-CCCCcHHHcCCCCCCEEEEEecc
Confidence 6789999999999999999999999 999999999999999 57789999999999999999876
No 74
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.64 E-value=5.3e-08 Score=108.31 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=64.2
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecccccCCC
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSEIHEHRD 740 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~~~~~~~ 740 (773)
+....|.|..+.||++||+.|...+++++++|+|||.||.|- |..||..|||.+|-|||||+.......+
T Consensus 24 ~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILK-D~dTL~~~gI~Dg~TvHLVik~~~~~~~ 93 (493)
T KOG0010|consen 24 KDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILK-DDDTLKQYGIQDGHTVHLVIKSQPRPTG 93 (493)
T ss_pred CcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCcccc-ChhhHHHcCCCCCcEEEEEeccCCCCCC
Confidence 356788999999999999999999999999999999999995 7789999999999999999988666665
No 75
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.44 E-value=3.6e-07 Score=80.96 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=53.7
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeC----C---eeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKG----Q---RIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~----G---~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
......+..++||.+||.+|+..+||||.+|+|.+- | ..|.+|.+||+.||+.+|++||+++..
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~~ 84 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVDTN 84 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE-T
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEeCC
Confidence 355778999999999999999999999999999865 2 446788999999999999999999654
No 76
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.43 E-value=4.9e-07 Score=76.86 Aligned_cols=61 Identities=25% Similarity=0.223 Sum_probs=55.8
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCC-CCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVK-ENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p-~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
++.+.+.|.+++|+..|+..+.++.|+++ .+.+|+|+|+.| +++.|++++||..||+|++.
T Consensus 10 ~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L-~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 10 GKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRL-DPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp SEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE--TTSCHHHHT-STTEEEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEc-CCCCCHHHCCCCCCCEEEEE
Confidence 35789999999999999999999999999 999999999999 56789999999999999987
No 77
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=98.42 E-value=3.7e-07 Score=98.79 Aligned_cols=67 Identities=25% Similarity=0.482 Sum_probs=56.4
Q ss_pred cccCcceecCCcccCCCCcCCC-------CCCCcceEEEEEEEeecCCCCCceEEEEEEcCC--CCcEEEEcCcce
Q 004117 3 KKITSPFCFPGELNMQRRLSEP-------SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN--TGQWWEFDDEHV 69 (773)
Q Consensus 3 kKi~~~i~FP~~LDm~~~~~~~-------~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~--~~~W~~FdD~~V 69 (773)
.|....+.+|..+++..++... .....+|+|.|+|+|.|.+..+|||+|+||-.. ..+||.|||-.|
T Consensus 220 ~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 220 KKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred cccCCceecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 5677889999999999887543 234789999999999999999999999999753 369999999655
No 78
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.1e-07 Score=102.82 Aligned_cols=45 Identities=31% Similarity=0.595 Sum_probs=39.5
Q ss_pred cceEEEEEEEeecCCCCCceEEEEEEcCCCC--cEEEEcCcceeeeC
Q 004117 29 LIYDLSAVLIHKGTAVNSGHYIALIKDENTG--QWWEFDDEHVSNLG 73 (773)
Q Consensus 29 ~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~--~W~~FdD~~V~~~~ 73 (773)
.-|.|.|||+|+|.|+++|||++|||....+ +|..|||+.|-..+
T Consensus 686 ~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~ 732 (749)
T COG5207 686 KPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNS 732 (749)
T ss_pred CcccceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehh
Confidence 3499999999999999999999999986544 68999999987765
No 79
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.41 E-value=8.8e-07 Score=73.87 Aligned_cols=65 Identities=31% Similarity=0.332 Sum_probs=59.7
Q ss_pred CCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 669 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 669 ~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
..+++.+.+.++++|..+|.+|..+.||++.+|+|.++|+.|. |+.||.+|+|..+++++|....
T Consensus 8 ~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~-d~~~l~~~~i~~~~~~~l~~~~ 72 (75)
T KOG0001|consen 8 DGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLE-DGRTLADYNIQEGSTLHLVLSL 72 (75)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECc-CCCcHHHhCCCCCCEEEEEEec
Confidence 3477889999999999999999999999999999999999994 6699999999999999998654
No 80
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=9.2e-07 Score=95.71 Aligned_cols=73 Identities=21% Similarity=0.360 Sum_probs=61.8
Q ss_pred cccCcceecCCcccCCCCcCCC------CCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCCC
Q 004117 3 KKITSPFCFPGELNMQRRLSEP------SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 75 (773)
Q Consensus 3 kKi~~~i~FP~~LDm~~~~~~~------~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~~ 75 (773)
.|+.+.+.||.+|.++.-+..+ ......|.|.||+.|+|++|..|||+..+.+..-..|++.||..|..+..+
T Consensus 322 ~k~~K~i~~~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~ 400 (420)
T KOG1871|consen 322 RKLGKKIEYPWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQE 400 (420)
T ss_pred hhhchhhhccceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHh
Confidence 4788889999988887654422 123678999999999999999999999999988889999999999999844
No 81
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.09 E-value=6.8e-06 Score=76.09 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=49.3
Q ss_pred eEEEEecCcccHHHHHHHHHHHh-------CCCCCCcEEEeCCeeeccccchhhhcCCCCCC------EEEEEecc
Q 004117 672 FVNLKVSASTSIYQLKMMIWESL-------GVVKENQILHKGQRIIDQECATLADLNIFPGD------KLWVQDSE 734 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~-------gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~------~l~l~~~~ 734 (773)
...+.+++++||++||+.|+... -..+.+.|||+.||-| +|.+||+++++..|+ ++||+++.
T Consensus 15 ~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL-~d~~tL~~~~~~~~~~~~~~~vmHlvvrp 89 (111)
T PF13881_consen 15 IGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRIL-EDNKTLSDCRLPSGETPGGPTVMHLVVRP 89 (111)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE--SSSBTGGGT--TTSETT--EEEEEEE-S
T ss_pred ccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeec-CCcCcHHHhCCCCCCCCCCCEEEEEEecC
Confidence 57889999999999999999754 2356778999999999 689999999999988 69999876
No 82
>PLN02560 enoyl-CoA reductase
Probab=98.03 E-value=8.4e-06 Score=88.58 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=54.0
Q ss_pred EEEEecCcccHHHHHHHHHHHhCC-CCCCcEEEeC---C----eeeccccchhhhcCCCCCCEEEEEecc
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGV-VKENQILHKG---Q----RIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi-~p~~Q~L~~~---G----~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.+|+|++++||.+||.+|+++.++ +|++|||.+. | +.| +|++||.++||..|++|++++-+
T Consensus 16 ~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L-~d~ktL~d~gv~~gstLy~kDLG 84 (308)
T PLN02560 16 GGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVL-DDSKSLKDYGLGDGGTVVFKDLG 84 (308)
T ss_pred eeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCcccc-CCCCCHHhcCCCCCceEEEEeCC
Confidence 478999999999999999999997 8999999972 4 477 57789999999999999999644
No 83
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.99 E-value=1.1e-05 Score=69.89 Aligned_cols=54 Identities=30% Similarity=0.385 Sum_probs=48.0
Q ss_pred cCcccHHHHHHHHHHHhC-CCCCCcEEE--eCCeeeccccchhhhcCCCCCCEEEEEe
Q 004117 678 SASTSIYQLKMMIWESLG-VVKENQILH--KGQRIIDQECATLADLNIFPGDKLWVQD 732 (773)
Q Consensus 678 s~~~tv~~lK~~I~e~~g-i~p~~Q~L~--~~G~~L~~d~~TL~~~~I~~~~~l~l~~ 732 (773)
+++.||.+||.+|.+..+ +++..|||. +.|+.|. |+.||.++||..|++|++++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~-d~~tL~~~gv~~g~~lyvKD 76 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLK-DDDTLVDLGVGAGATLYVRD 76 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccC-CcccHhhcCCCCCCEEEEee
Confidence 688999999999999986 479999995 7899994 66799999999999999983
No 84
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.97 E-value=6.8e-06 Score=71.69 Aligned_cols=61 Identities=28% Similarity=0.429 Sum_probs=39.8
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCC---eee-ccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ---RII-DQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G---~~L-~~d~~TL~~~~I~~~~~l~l~ 731 (773)
+...|+|++++|+.+||.+|.+.+++++..|.|+.+- ..| .++++||+++||.-||.|+|.
T Consensus 14 G~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 14 GMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 6778899999999999999999999999999997432 344 467899999999999999986
No 85
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.87 E-value=1.9e-05 Score=69.28 Aligned_cols=79 Identities=19% Similarity=0.176 Sum_probs=64.7
Q ss_pred cccCCCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEe-CCeeeccccchhhhc-------CCCCCCEEEEEecccc
Q 004117 665 RSRKTRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHK-GQRIIDQECATLADL-------NIFPGDKLWVQDSEIH 736 (773)
Q Consensus 665 R~R~~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~-~G~~L~~d~~TL~~~-------~I~~~~~l~l~~~~~~ 736 (773)
|.||.|-++-++..++.||.+||.++.....-|++.|||+. .-.||-+|++||+++ ..+.-.++-|.+..-+
T Consensus 6 ~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~pA~vgLr~~~~~ 85 (110)
T KOG4495|consen 6 RVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQAPATVGLRALDAF 85 (110)
T ss_pred eeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccccccCCCceeeeecccch
Confidence 34667788999999999999999999999999999999997 555777999999999 5667778999766545
Q ss_pred cCCCccc
Q 004117 737 EHRDIAD 743 (773)
Q Consensus 737 ~~~~~~d 743 (773)
|+-.|.|
T Consensus 86 e~l~ied 92 (110)
T KOG4495|consen 86 EALCIED 92 (110)
T ss_pred hcccccc
Confidence 5444444
No 86
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.84 E-value=6.3e-05 Score=59.47 Aligned_cols=61 Identities=30% Similarity=0.379 Sum_probs=55.9
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
+....+.+.+++|+.+||.+|.+++|++|..|.|+++|..+ .+..++.++++..|++|++.
T Consensus 7 ~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 7 GKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKIL-PDSLTLEDYGLQDGDELVLV 67 (69)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeEC-CCCCcHHHcCCCCCCEEEEE
Confidence 35678889999999999999999999999999999999999 56678889999999999987
No 87
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=97.82 E-value=2.5e-05 Score=83.30 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=59.4
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhC--CCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLG--VVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~g--i~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
..+.|+|.+++||..||.+|....| .|+.+|.|||+||.| .|+.||.+|+|..++-|-++++-
T Consensus 11 ~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL-~D~~tv~Eykv~E~~fiVvMlsK 75 (340)
T KOG0011|consen 11 QTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKIL-KDETTVGEYKVKEKKFIVVMLSK 75 (340)
T ss_pred ceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceec-cCCcchhhhccccCceEEEEEec
Confidence 5689999999999999999999999 999999999999999 68899999999999999888766
No 88
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=3.9e-05 Score=91.70 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=57.5
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
++.++.|...+||+++|.+|.++..|+-+.|||||+||.| .|++++++||| .|-+|||+.+
T Consensus 13 r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl-~~~k~vq~~~v-dgk~~hlver 73 (1143)
T KOG4248|consen 13 RTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVL-QDDKKVQEYNV-DGKVIHLVER 73 (1143)
T ss_pred ceeEEEechHHHHHHHHHHHHHhcccccccceeeecceee-ccchhhhhccC-CCeEEEeecc
Confidence 5678999999999999999999999999999999999999 58899999999 9999999954
No 89
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.44 E-value=0.0004 Score=58.57 Aligned_cols=63 Identities=25% Similarity=0.214 Sum_probs=56.4
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEe---CC-eeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHK---GQ-RIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~---~G-~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
-.+.+.|.|..+|..||++|+...|++- +|||.| +| +||-.+..||++|||+-.-.|.|..+.
T Consensus 11 ~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 11 SDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 4688999999999999999999999988 999998 34 788778899999999999999998554
No 90
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00061 Score=71.95 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=55.1
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
..++|+|.++++|.+||+.+..+.|||+++-++||.||+|+ |+.|++.+.+...+.+|++
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs-~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELS-NDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccc-cCceeecccccccchhhhh
Confidence 56899999999999999999999999999999999999996 6679998888888888877
No 91
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.012 Score=66.20 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=54.8
Q ss_pred ceEEEE-ecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 671 SFVNLK-VSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 671 ~~~~l~-vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
+...++ ++.++|...||++|....||+|+.|+++..|..|- |+--++.++|.||.+|+|+=+
T Consensus 13 k~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~-dd~~~~al~iKpn~~lmMmGt 75 (473)
T KOG1872|consen 13 KKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAK-DDVDWGALQIKPNETLMMMGT 75 (473)
T ss_pred ccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccc-ccccccccccCCCCEEEeecc
Confidence 445556 89999999999999999999999999999999995 444789999999999999943
No 92
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.72 E-value=0.031 Score=46.88 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=43.7
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWV 730 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l 730 (773)
+...++|++++|+.+|=.+.-.++|+.+++=.|.+++|.| |-+.++.-.|+..|+.|.|
T Consensus 7 rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~l-dlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 7 RRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPL-DLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEE-SSS-BHHHH---SS-EEEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEe-ccccceeecCCCCCCEEeC
Confidence 4558899999999999999999999999988999999999 6889999999999999875
No 93
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=95.00 E-value=0.035 Score=48.21 Aligned_cols=60 Identities=28% Similarity=0.377 Sum_probs=43.9
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCc------EEE-eCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQ------ILH-KGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q------~L~-~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
+.+.+.+-...+|.+|...|.+.++.+..+. .|. -+|..| +++.||+++||..|++|.|.
T Consensus 13 ~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L-~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 13 RQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPL-DPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp -EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEE-ETTSBCGGGT--TT-EEEE-
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCccc-CCcCcHhHcCCCCCCEEEeC
Confidence 6778999999999999999999999865543 455 688999 68899999999999999874
No 94
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.28 E-value=0.076 Score=63.71 Aligned_cols=48 Identities=27% Similarity=0.488 Sum_probs=42.0
Q ss_pred CcceEEEEEEEeecCCCCCceEEEEEEc--------CCCCcEEEEcCcceeeeCCC
Q 004117 28 DLIYDLSAVLIHKGTAVNSGHYIALIKD--------ENTGQWWEFDDEHVSNLGHH 75 (773)
Q Consensus 28 ~~~Y~L~aVliH~G~sa~sGHY~a~ik~--------~~~~~W~~FdD~~V~~~~~~ 75 (773)
-.+|+|.|+|.|.|.+-+.+|.+++|+- +.+.+||.|||--|++++.+
T Consensus 788 ~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~ 843 (1118)
T KOG1275|consen 788 AVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEE 843 (1118)
T ss_pred eEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChH
Confidence 4799999999999998899999999983 23469999999999999843
No 95
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=93.95 E-value=0.042 Score=60.27 Aligned_cols=70 Identities=27% Similarity=0.422 Sum_probs=58.1
Q ss_pred ccccCcceecC-CcccCCCCcCCC---CCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCC
Q 004117 2 KKKITSPFCFP-GELNMQRRLSEP---SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 2 rkKi~~~i~FP-~~LDm~~~~~~~---~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~ 74 (773)
+.|.-+-++|| ..+||.+++... ......|.|.|-++|- -.-|||..+|+++++++||+.+|-+|++...
T Consensus 352 ~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~ 425 (442)
T KOG2026|consen 352 KEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---DEDGNFRIQIYDNSSEKWYEIQDLHVTERLP 425 (442)
T ss_pred cccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC---cccCceEEEEEeCCCcceEEecccchhhhhh
Confidence 46788899999 678887776432 2235889999999998 4679999999999999999999999999873
No 96
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.86 E-value=0.31 Score=42.35 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=45.8
Q ss_pred eEEEEecCcccHHHHHHHHHHHhCCCCCCcEEE--eCCeeeccc--cchhhhcCCCCCCEEEEE
Q 004117 672 FVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIIDQE--CATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~--~~G~~L~~d--~~TL~~~~I~~~~~l~l~ 731 (773)
.+.-...+++||.+|..-|....+.. ..-.|+ |--|.+.++ +.||.++|+.|..+|.|.
T Consensus 16 ~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 16 TLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred EEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 35557788999999999998765543 344565 666888533 789999999999999885
No 97
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=93.40 E-value=0.27 Score=42.68 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=49.5
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEE--eCCeeeccc--cchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIIDQE--CATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~--~~G~~L~~d--~~TL~~~~I~~~~~l~l~ 731 (773)
..+...+.+++||.+|..-|....+.....-.|+ |-.+.|.++ ++||.++|+.|..+|.|.
T Consensus 15 ~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 15 SRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence 4466788899999999999977677766666775 667888654 689999999999999885
No 98
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.14 Score=51.86 Aligned_cols=59 Identities=24% Similarity=0.191 Sum_probs=52.3
Q ss_pred EecCcccHHHHHHHHHHHhCCCCCCcEEE-eCC-----eeeccccchhhhcCCCCCCEEEEEecc
Q 004117 676 KVSASTSIYQLKMMIWESLGVVKENQILH-KGQ-----RIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 676 ~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~-~~G-----~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+.++++||.++|.+++...|.+++...|- |.| -.|+++++.|..|+...|-.||+++..
T Consensus 18 r~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~ 82 (234)
T KOG3206|consen 18 RLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN 82 (234)
T ss_pred hcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence 56789999999999999999999999884 444 357899999999999999999999765
No 99
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=93.37 E-value=0.24 Score=43.00 Aligned_cols=61 Identities=21% Similarity=0.200 Sum_probs=51.1
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCC-cEEE--eCCeeecccc-chhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKEN-QILH--KGQRIIDQEC-ATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~-Q~L~--~~G~~L~~d~-~TL~~~~I~~~~~l~l~ 731 (773)
..+...+.+++||.+|..-|......+... =.|+ |-.+.|.+++ .||+++|+.|+.+|+|.
T Consensus 17 ~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 17 SRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp TEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 456778889999999999999998888765 4665 6678886666 89999999999999985
No 100
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=0.14 Score=51.95 Aligned_cols=72 Identities=18% Similarity=0.093 Sum_probs=59.7
Q ss_pred ccccccCC--CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCC--CEEEEEecc
Q 004117 662 ASKRSRKT--RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPG--DKLWVQDSE 734 (773)
Q Consensus 662 ~S~R~R~~--~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~--~~l~l~~~~ 734 (773)
.+.|-|.+ +..+.+.+..-+|+.++|.+++.++|+.|-.|+++|+|+-|. |..-|.+++|..| -.|-+.+..
T Consensus 146 ~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~-dkt~LeEc~iekg~rYvlqviVlq 221 (231)
T KOG0013|consen 146 PILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLV-DKTDLEECKIEKGQRYVLQVIVLQ 221 (231)
T ss_pred cchHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCcee-ccccceeeeecCCCEEEEEEEecc
Confidence 34444443 478899999999999999999999999999999999999995 6678999999999 455555444
No 101
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.4 Score=43.29 Aligned_cols=63 Identities=25% Similarity=0.262 Sum_probs=57.2
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.++.++|.-+++++-|+..--++.|+....-|+.|+|+.| .+..|=++++...||+|.++..+
T Consensus 31 ~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI-~~~~TP~~L~mEd~D~Iev~~~q 93 (99)
T KOG1769|consen 31 SVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRI-RETHTPADLEMEDGDEIEVVQEQ 93 (99)
T ss_pred CEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCc-CCCCChhhhCCcCCcEEEEEeec
Confidence 5678899999999999999999999999999999999999 56679999999999999998443
No 102
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=92.67 E-value=0.17 Score=45.90 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=36.7
Q ss_pred eEEEEec--CcccHHHHHHHHHHHhCCCCCC--cEEEeCCeeeccccchhhh
Q 004117 672 FVNLKVS--ASTSIYQLKMMIWESLGVVKEN--QILHKGQRIIDQECATLAD 719 (773)
Q Consensus 672 ~~~l~vs--~~~tv~~lK~~I~e~~gi~p~~--Q~L~~~G~~L~~d~~TL~~ 719 (773)
.+.|+|. .++||..||.+|.+..+-.+.. +||||+||-|. |...|..
T Consensus 13 Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~-d~t~l~~ 63 (97)
T PF10302_consen 13 DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLN-DHTDLSS 63 (97)
T ss_pred CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccC-ccchhhh
Confidence 4678888 8999999999999999555554 47799999995 5555543
No 103
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=92.54 E-value=0.39 Score=42.66 Aligned_cols=62 Identities=13% Similarity=0.291 Sum_probs=46.0
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEe----CC-eeeccccchhhhcCCCCCCEEEEEec
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHK----GQ-RIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~----~G-~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
..++..+|..|||..|+..+.+.|.| +..=||.. ++ ..|.+.+.||.++||..|-+|.|-..
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~r 80 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEER 80 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE-
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEee
Confidence 56778899999999999999999999 77789974 44 45666678999999999999988743
No 104
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=91.84 E-value=0.27 Score=51.15 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=48.0
Q ss_pred EEecCcccHHHHHHHH-HHHhCCCCCCcEEE----eCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 675 LKVSASTSIYQLKMMI-WESLGVVKENQILH----KGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 675 l~vs~~~tv~~lK~~I-~e~~gi~p~~Q~L~----~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.+.+++.||.||+..| .....+.|..||+. -+|+.|- |+.||+++|..+|++|.+++-+
T Consensus 17 ~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~-~~s~l~e~~~~s~~~i~vKDLG 80 (297)
T KOG1639|consen 17 KDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLI-DNSKLQEYGDGSGATIYVKDLG 80 (297)
T ss_pred ecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCcccc-chhHHHHhccCCCCEEEEeccC
Confidence 7889999999999555 55579999666664 4799995 5568999999999999999544
No 105
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=0.096 Score=43.22 Aligned_cols=61 Identities=28% Similarity=0.310 Sum_probs=53.3
Q ss_pred CCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEE
Q 004117 669 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWV 730 (773)
Q Consensus 669 ~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l 730 (773)
.++.+.+++.+++||.++|-.|..+.|-.|+--.|-..+-.+ .|.-||.+|.|..|-.|.|
T Consensus 10 LGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~-kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 10 LGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIF-KDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred cCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhh-hcccceeeEEeccCccEEE
Confidence 346788999999999999999999999999998888666666 6888999999999988766
No 106
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=87.98 E-value=1 Score=39.21 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=43.1
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCC-CCCcEEE--eCCeeeccccchhhhcCCCCCCE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVV-KENQILH--KGQRIIDQECATLADLNIFPGDK 727 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~-p~~Q~L~--~~G~~L~~d~~TL~~~~I~~~~~ 727 (773)
+.+...+..++||.+|..-|....+-+ ...-.|. |-.|.|.++++||+++|+.+..+
T Consensus 15 ~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 15 KRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 445667889999999999999875432 2334454 77899988899999999996443
No 107
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=87.84 E-value=1.9 Score=37.02 Aligned_cols=59 Identities=8% Similarity=0.119 Sum_probs=44.3
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEE--eCCeeecc--ccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIIDQ--ECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~--~~G~~L~~--d~~TL~~~~I~~~~~l~l~ 731 (773)
+.+.....+++||.+|..-|.....- +..-.|+ |-.+.|.+ .+.||+++|+.+ ++|.++
T Consensus 13 ~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~~ 75 (77)
T cd01767 13 KRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQR 75 (77)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEEE
Confidence 34666888999999999999876543 4445665 56688865 799999999994 555554
No 108
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=86.91 E-value=2.7 Score=37.13 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=45.6
Q ss_pred EEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCC--eeec-------cccchhhhcCCCCCCEEEEE
Q 004117 674 NLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ--RIID-------QECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 674 ~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G--~~L~-------~d~~TL~~~~I~~~~~l~l~ 731 (773)
.-.+..++||.+|..-|+ ..+..|..-.|+.+= |.|+ +.+.||+++||.+..+|.|.
T Consensus 18 ~rrF~~~~tl~~l~~fv~-~~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 18 ERRFLFTQSLRVIHDFLF-SLKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred EEEeCCCCcHHHHHHHHH-hCCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 345567899999999996 466778888888654 7775 34779999999999999887
No 109
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=86.53 E-value=1 Score=38.94 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=43.7
Q ss_pred ecCcccHHHHHHHHHHHhCC-CCCCcEEEeCCeeeccccchhhhc-CCCCCCEEEEE
Q 004117 677 VSASTSIYQLKMMIWESLGV-VKENQILHKGQRIIDQECATLADL-NIFPGDKLWVQ 731 (773)
Q Consensus 677 vs~~~tv~~lK~~I~e~~gi-~p~~Q~L~~~G~~L~~d~~TL~~~-~I~~~~~l~l~ 731 (773)
|+++++|.+|+..|.+...- .--+=.|.++|+.| +|...|+++ ||..|.+|.|+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L-~~~~el~~i~~~~~~~~L~lv 56 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRL-DDFVELSEIEGIKDGCVLELV 56 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCcc-CCchhhhhhhCCCCCcEEEEE
Confidence 68999999999998877442 22344778999999 788888887 58999999999
No 110
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=85.41 E-value=3.9 Score=36.00 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=48.4
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEE--eCCeeec--cccchhhhcCCCCCCEEEEEe
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIID--QECATLADLNIFPGDKLWVQD 732 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~--~~G~~L~--~d~~TL~~~~I~~~~~l~l~~ 732 (773)
..+.-....++||..|-.-|.. .|.+++.-.|+ |-=|.|. +-+.||+++|+.|-.+|.|.+
T Consensus 16 ~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 16 KREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred CEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 4455567788999999998888 68899888887 4446663 236899999999999999974
No 111
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=80.84 E-value=6 Score=34.56 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=47.2
Q ss_pred eEEEEecCcccHHHHHHHHHHHhCCCCCCcEEE--eCCeeec--cccchhhhcCCCCCCEEEEE
Q 004117 672 FVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIID--QECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~--~~G~~L~--~d~~TL~~~~I~~~~~l~l~ 731 (773)
.+.-...+++||.+|-.-|.. .|.++..-+|+ |==|.|+ +-+.||+++|+.|..+|.|.
T Consensus 16 r~~rrF~~t~~L~~l~~fv~~-~~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 16 FLERRFLGDTPLQVLLNFVAS-KGYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred EEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 344456788999999999976 48888888886 5557774 34679999999999999986
No 112
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=70.24 E-value=4.2 Score=44.84 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=58.4
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccc-cchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQE-CATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d-~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+...+.|..+..+.+|++.++-..||..+.--|+|+++.|..+ +.+|.++|+..|++|.+.-..
T Consensus 13 ~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks 77 (380)
T KOG0012|consen 13 KKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKS 77 (380)
T ss_pred eeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCC
Confidence 5568899999999999999999999999999999999999767 899999999999999998544
No 113
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=68.12 E-value=9.3 Score=33.46 Aligned_cols=37 Identities=22% Similarity=0.110 Sum_probs=34.0
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCC
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ 707 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G 707 (773)
.+++|.|.+.-+..+|..+|.+++++|++.-.|.|.-
T Consensus 11 ~tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 11 YTVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 4899999999999999999999999999888998754
No 114
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=66.68 E-value=14 Score=32.81 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=60.3
Q ss_pred CccccccccccCC------CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEE
Q 004117 657 EPDRRASKRSRKT------RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWV 730 (773)
Q Consensus 657 ~~~~R~S~R~R~~------~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l 730 (773)
.|.+..++.+=.. ..++-++|..++|...|-...-...|-..+.-|+.|+|+.+ +-++|=++++...++.|..
T Consensus 15 ~p~vkp~t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI-~~dqTP~dldmEdnd~iEa 93 (103)
T COG5227 15 NPLVKPITKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRI-DLDQTPGDLDMEDNDEIEA 93 (103)
T ss_pred CccccccccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceec-CCCCChhhcCCccchHHHH
Confidence 3455555544222 26789999999999998888888899999999999999999 4668999999999988766
Q ss_pred Ee
Q 004117 731 QD 732 (773)
Q Consensus 731 ~~ 732 (773)
+.
T Consensus 94 v~ 95 (103)
T COG5227 94 VT 95 (103)
T ss_pred HH
Confidence 53
No 115
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=64.78 E-value=11 Score=39.88 Aligned_cols=37 Identities=27% Similarity=0.668 Sum_probs=30.8
Q ss_pred CcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcc
Q 004117 28 DLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEH 68 (773)
Q Consensus 28 ~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~ 68 (773)
...|.+.+||--.-. --|++++|++ .+|.|.++||-.
T Consensus 216 g~~Y~Vt~VIQY~~~---~~HFvtWi~~-~dGsWLecDDLk 252 (275)
T PF15499_consen 216 GCLYQVTSVIQYQAN---LNHFVTWIRD-SDGSWLECDDLK 252 (275)
T ss_pred CeeEEEEEEEEEecc---CceeEEEEEc-CCCCeEeeccCC
Confidence 578999999876543 4699999999 578899999976
No 116
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=59.46 E-value=29 Score=34.45 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=42.7
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCc-EEEe-CCeee-ccccchhhhcCCCCCC
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQ-ILHK-GQRII-DQECATLADLNIFPGD 726 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q-~L~~-~G~~L-~~d~~TL~~~~I~~~~ 726 (773)
.++.+.+.++.||.+|+..|.+..++++..| .|++ .|++| ..++..+..+.-...+
T Consensus 15 ~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~ 73 (162)
T PF13019_consen 15 PTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD 73 (162)
T ss_pred CeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence 5788999999999999999999999999985 5665 45666 3345556666555544
No 117
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=57.24 E-value=29 Score=29.45 Aligned_cols=55 Identities=9% Similarity=0.052 Sum_probs=41.8
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCC----CCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGV----VKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi----~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
....+++....||.+|..++.+..+- ....-.+..||+... .+.-|.+||.|.+.
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~------~~~~l~~gD~v~i~ 74 (80)
T cd00754 16 DEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR------LDTPLKDGDEVAII 74 (80)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC------CCcccCCCCEEEEe
Confidence 45677888889999999999988643 233446778998874 34568999999887
No 118
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=56.40 E-value=16 Score=43.29 Aligned_cols=90 Identities=16% Similarity=0.265 Sum_probs=58.7
Q ss_pred EEEEecCcccHHHHHHHHHHHhCCCC----CCcEEEeCC--eeeccccchhhhcCCCCCCEEEEEecccccCCCccchhh
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGVVK----ENQILHKGQ--RIIDQECATLADLNIFPGDKLWVQDSEIHEHRDIADELS 746 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi~p----~~Q~L~~~G--~~L~~d~~TL~~~~I~~~~~l~l~~~~~~~~~~~~d~~~ 746 (773)
+.|+++.+.|+.+||-++-+..|..+ ..-.+++|| +.|..-++||.+ .|.+.|-+.+--+. ++.+.
T Consensus 470 l~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~-~I~~~d~vylYe~~-------~ngi~ 541 (823)
T COG5560 470 LKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQ-DIPQTDFVYLYETN-------DNGIE 541 (823)
T ss_pred eEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHh-hcCccceEEEeecC-------CCCeE
Confidence 78999999999999999999999998 444456666 556434455543 46666666655211 11111
Q ss_pred hcccccccccccccccccccccccc
Q 004117 747 DQKMNVQHVEEGFRGTLLTSNLSSQ 771 (773)
Q Consensus 747 ~~~~~~~~~E~GF~gT~L~~~~~~~ 771 (773)
-... -..+|.|++...|.|.++-|
T Consensus 542 vpvv-h~~~~~gYks~rlFg~pflq 565 (823)
T COG5560 542 VPVV-HLRIEKGYKSKRLFGDPFLQ 565 (823)
T ss_pred EEEE-eccccccccchhhhCCcceE
Confidence 0011 11458899999999988654
No 119
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=55.06 E-value=34 Score=39.66 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=56.5
Q ss_pred eEEEEecCcccHHHHHHHHHHHhCCC----CCCc--EEE-eCCeeeccccchhhhcCCCCCCEEEEEecccccCCCccch
Q 004117 672 FVNLKVSASTSIYQLKMMIWESLGVV----KENQ--ILH-KGQRIIDQECATLADLNIFPGDKLWVQDSEIHEHRDIADE 744 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~gi~----p~~Q--~L~-~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~~~~~~~~~d~ 744 (773)
.+.+-+-.+..|.+|--.|.+..|=. .... .|. .+|..| +.+.||.+.||.+|++|+|.-.+-.+..++.|+
T Consensus 13 ~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL-~~~~sL~~~gV~DG~~L~L~p~~~~~p~~v~dD 91 (452)
T TIGR02958 13 AVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPL-DPDASLAEAGVRDGELLVLVPASATEPAPVVED 91 (452)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCC-CCCCCHHHcCCCCCCeEEEeeCCCCCCCCcccc
Confidence 45777888999999998888887652 2222 222 688999 678999999999999999997544444556666
Q ss_pred hhhcc
Q 004117 745 LSDQK 749 (773)
Q Consensus 745 ~~~~~ 749 (773)
..|..
T Consensus 92 v~dav 96 (452)
T TIGR02958 92 VSDAV 96 (452)
T ss_pred HHHHH
Confidence 55444
No 120
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=54.80 E-value=21 Score=36.04 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=25.4
Q ss_pred EEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCCC
Q 004117 34 SAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 75 (773)
Q Consensus 34 ~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~~ 75 (773)
.|-|.-+|. ||-+++.+. .+.||.|||+.+.+-++.
T Consensus 130 ~agi~~~g~----~Havfa~~t--s~gWy~iDDe~~y~~tPd 165 (193)
T PF05408_consen 130 HAGIFLKGQ----EHAVFACVT--SDGWYAIDDEDFYPWTPD 165 (193)
T ss_dssp EEEEEEEST----TEEEEEEEE--TTCEEEEETTEEEE----
T ss_pred hhHheecCC----cceEEEEEe--eCcEEEecCCeeeeCCCC
Confidence 444444554 899999985 678999999999998854
No 121
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=54.78 E-value=45 Score=27.37 Aligned_cols=49 Identities=10% Similarity=0.255 Sum_probs=38.3
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
+...+++....|+.+||.++ -|+.=.++++|-+..+| +-+.+||.|.+.
T Consensus 6 N~k~~~~~~~~tl~~lr~~~------k~~~DI~I~NGF~~~~d------~~L~e~D~v~~I 54 (57)
T PF14453_consen 6 NEKEIETEENTTLFELRKES------KPDADIVILNGFPTKED------IELKEGDEVFLI 54 (57)
T ss_pred CCEEEEcCCCcCHHHHHHhh------CCCCCEEEEcCcccCCc------cccCCCCEEEEE
Confidence 56678999999999999984 34445889999988433 456889998886
No 122
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=52.18 E-value=22 Score=41.97 Aligned_cols=61 Identities=25% Similarity=0.306 Sum_probs=41.1
Q ss_pred EEEEecCcccHHHHHHHHHHHh--CCCCCCcEEE---------e--CCe-eecccc------------chhhhcCCCCCC
Q 004117 673 VNLKVSASTSIYQLKMMIWESL--GVVKENQILH---------K--GQR-IIDQEC------------ATLADLNIFPGD 726 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~--gi~p~~Q~L~---------~--~G~-~L~~d~------------~TL~~~~I~~~~ 726 (773)
+.++|=.-|||.|+|++|.+.. ++| ..||-. - +|+ .|.|++ .||++|||..|+
T Consensus 204 i~VkVLdCDTItQVKeKiLDavyk~~p-~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dga 282 (539)
T PF08337_consen 204 IPVKVLDCDTITQVKEKILDAVYKNTP-YSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDGA 282 (539)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTTTS--GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TTE
T ss_pred EEEEEEecCcccHHHHHHHHHHHcCCC-CCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCCc
Confidence 7899999999999999999985 443 334221 1 233 444332 389999999999
Q ss_pred EEEEEecc
Q 004117 727 KLWVQDSE 734 (773)
Q Consensus 727 ~l~l~~~~ 734 (773)
+|-|+...
T Consensus 283 ~vaLv~k~ 290 (539)
T PF08337_consen 283 TVALVPKQ 290 (539)
T ss_dssp EEEEEES-
T ss_pred eEEEeecc
Confidence 99999754
No 123
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=50.37 E-value=34 Score=30.34 Aligned_cols=61 Identities=10% Similarity=0.080 Sum_probs=43.5
Q ss_pred EEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+...++=..++..||..++.++|+.-..=.++....+| +.+++|.+-||+-.-++.+.+.-
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L-~~~k~L~dQcVqgeGlVQlnvQi 65 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQL-EPHKSLVDQCVQGEGLVQLNVQI 65 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE---TTSBTTTSS----SEEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEecccee-cCCccHHHhhccccCEEEEEEEE
Confidence 45566677889999999999999999999999999998 68899999999999987776543
No 124
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=49.40 E-value=56 Score=30.93 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=44.9
Q ss_pred cccccCCCceEEEEecC-cccHHHHHHHHHHH----hCCCCCCcE------EE--------------e--CC-eee--cc
Q 004117 663 SKRSRKTRSFVNLKVSA-STSIYQLKMMIWES----LGVVKENQI------LH--------------K--GQ-RII--DQ 712 (773)
Q Consensus 663 S~R~R~~~~~~~l~vs~-~~tv~~lK~~I~e~----~gi~p~~Q~------L~--------------~--~G-~~L--~~ 712 (773)
|=-.|-.|.-+-=.|+- ++|+.+|++++.+. -|++|..-. |+ + .. -.| .+
T Consensus 8 SFeyRn~K~~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~ 87 (122)
T PF10209_consen 8 SFEYRNVKNLVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSD 87 (122)
T ss_pred cccCCceeeeeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCC
Confidence 33446665544445775 89999998887776 467665432 11 1 11 122 36
Q ss_pred ccchhhhcCCCCCCEEEEE
Q 004117 713 ECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 713 d~~TL~~~~I~~~~~l~l~ 731 (773)
+++||.++||..+.-|-+-
T Consensus 88 ~~~tL~~~gv~nETEiSfF 106 (122)
T PF10209_consen 88 DDKTLKELGVENETEISFF 106 (122)
T ss_pred CCCcHHHcCCCccceeeee
Confidence 7889999999998888766
No 125
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=48.01 E-value=38 Score=38.03 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=47.4
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhC--CCCCCcEEEe----CCeee-ccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLG--VVKENQILHK----GQRII-DQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~g--i~p~~Q~L~~----~G~~L-~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+...++|..++++..|-.+|..-+- ..|++-.+.- .|... ...+.|+.++|+..|++|.|.-+.
T Consensus 10 G~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~ysd 80 (571)
T COG5100 10 GQRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEYSD 80 (571)
T ss_pred CceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEecc
Confidence 5667899999999999999988764 4455555542 23211 135689999999999999999644
No 126
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=45.27 E-value=71 Score=26.31 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=39.7
Q ss_pred EEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
..+++....||.+|..+ +++++..-.+..||+.+..+ .-.+.-|.+||.|-+.
T Consensus 7 ~~~~~~~~~tv~~ll~~----l~~~~~~i~V~vNg~~v~~~--~~~~~~L~~gD~V~ii 59 (65)
T cd00565 7 EPREVEEGATLAELLEE----LGLDPRGVAVALNGEIVPRS--EWASTPLQDGDRIEIV 59 (65)
T ss_pred eEEEcCCCCCHHHHHHH----cCCCCCcEEEEECCEEcCHH--HcCceecCCCCEEEEE
Confidence 45678888999988777 67888777788999877322 2334568999998876
No 127
>PRK06437 hypothetical protein; Provisional
Probab=43.38 E-value=80 Score=26.47 Aligned_cols=51 Identities=12% Similarity=0.175 Sum_probs=39.5
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
+...+++....||.+|=. .+|+++..--+..||+.+. .+.-|.+||.|-+.
T Consensus 11 ~~~~~~i~~~~tv~dLL~----~Lgi~~~~vaV~vNg~iv~------~~~~L~dgD~Veiv 61 (67)
T PRK06437 11 INKTIEIDHELTVNDIIK----DLGLDEEEYVVIVNGSPVL------EDHNVKKEDDVLIL 61 (67)
T ss_pred cceEEEcCCCCcHHHHHH----HcCCCCccEEEEECCEECC------CceEcCCCCEEEEE
Confidence 345678888899986554 4899987777889999884 45567899998876
No 128
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=42.64 E-value=49 Score=30.03 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=44.3
Q ss_pred ccccccccccCCC-ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEE--E-e---CC----eeeccccchh
Q 004117 658 PDRRASKRSRKTR-SFVNLKVSASTSIYQLKMMIWESLGVVKENQIL--H-K---GQ----RIIDQECATL 717 (773)
Q Consensus 658 ~~~R~S~R~R~~~-~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L--~-~---~G----~~L~~d~~TL 717 (773)
.++|+|.-....+ ....|-|+|++|..++-..+-++|.|.-.-|.. | . .| +.|.|++.-|
T Consensus 3 ~~~~~~~sf~lp~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~nP~kFALYe~~h~~ge~~~rkL~d~E~PL 73 (96)
T cd01778 3 TSLRTSTSLPLPKDTAKHLHISSKTTVREVIEALLKKFLVVDNPRKFALFEREHRTGQVYLRKLSDDECPL 73 (96)
T ss_pred cceeEEEEEeccCCceeEEEEecCCcHHHHHHHHHHhheeccCCcceEEEEEEecCCcEEEEECCCCCCCe
Confidence 3567777777666 467889999999999999999999998776643 3 1 44 5676555443
No 129
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=42.57 E-value=28 Score=30.43 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=22.2
Q ss_pred EEEEecCcccHHHHHHHHHHHhCCCCC
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGVVKE 699 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi~p~ 699 (773)
+.|+|+.+.||.+||..+|+.-.--|-
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~PL 28 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYPL 28 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGSTT
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCCh
Confidence 679999999999999999998655553
No 130
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=39.94 E-value=39 Score=37.93 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=45.8
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhC-CCCCCcEEE--eCCeeeccccchhhhcCCCCCCEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLG-VVKENQILH--KGQRIIDQECATLADLNIFPGDKL 728 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~g-i~p~~Q~L~--~~G~~L~~d~~TL~~~~I~~~~~l 728 (773)
+.+.+.+.-+.||.+|+.-|...-. -+...|.|+ |--|.|+|++.||+++|+.+--.|
T Consensus 316 ~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 316 TRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred ceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 4567788889999999999998763 344467776 556999999999999999865443
No 131
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=39.43 E-value=95 Score=25.50 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=39.0
Q ss_pred EEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
..+++....||.+|..+ +++++..-.+..||+.+..+ .-.+.-|.+||.|-+.
T Consensus 6 ~~~~~~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~~~--~~~~~~L~~gD~veii 58 (64)
T TIGR01683 6 EPVEVEDGLTLAALLES----LGLDPRRVAVAVNGEIVPRS--EWDDTILKEGDRIEIV 58 (64)
T ss_pred eEEEcCCCCcHHHHHHH----cCCCCCeEEEEECCEEcCHH--HcCceecCCCCEEEEE
Confidence 35677788899988776 78988766777899877322 3445678999998876
No 132
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=37.76 E-value=35 Score=41.20 Aligned_cols=38 Identities=18% Similarity=0.077 Sum_probs=35.1
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCe
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQR 708 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~ 708 (773)
..+.+-+++++|+..+++.|....|||...|.|+|.|.
T Consensus 325 ~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~ 362 (732)
T KOG4250|consen 325 TSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGG 362 (732)
T ss_pred eEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecC
Confidence 56788899999999999999999999999999999863
No 133
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=36.34 E-value=36 Score=29.72 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=22.8
Q ss_pred EEEEecCcccHHHHHHHHHHHhCCCC
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGVVK 698 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi~p 698 (773)
+.|.|+.+.||.+||.++++...--|
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~~~P 27 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQARKMP 27 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHHhCC
Confidence 57899999999999999999876555
No 134
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=36.14 E-value=1.5e+02 Score=25.63 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=35.8
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCC--CCCcEEE--e----CCeeeccccchhh
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVV--KENQILH--K----GQRIIDQECATLA 718 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~--p~~Q~L~--~----~G~~L~~d~~TL~ 718 (773)
...+|.|++++|..+|=.++.+++|+. |.+=.|+ . ..+.|.+++.-|.
T Consensus 13 ~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~ 68 (87)
T cd01768 13 TYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQ 68 (87)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHH
Confidence 457899999999999999999999999 3333554 1 2356766666654
No 135
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=35.27 E-value=43 Score=35.56 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=43.8
Q ss_pred EEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCC------eeeccccchhhhcCCCCCCEEEEEecc
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ------RIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G------~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
=.+-|..+++|.+|=..|.+..|.|++...++|.- ..| +-..|+....|..||.|......
T Consensus 87 Gh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i-~~~~t~~~~el~~GdIi~fQ~~~ 153 (249)
T PF12436_consen 87 GHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPI-DPNQTFEKAELQDGDIICFQRAP 153 (249)
T ss_dssp EEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--TTEEEEEEE--
T ss_pred eEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEc-CCCCchhhcccCCCCEEEEEecc
Confidence 36678999999999999999999999999888754 345 67899999999999999998744
No 136
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=33.44 E-value=88 Score=27.65 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=32.1
Q ss_pred EEEEecCcccHHHHHHHHHHHhCCCCC-CcEEE--eCC--eeeccc
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGVVKE-NQILH--KGQ--RIIDQE 713 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi~p~-~Q~L~--~~G--~~L~~d 713 (773)
.+|-|.+.+|+.+|=.++.+++.|.-- +=.|+ .+| .||.+|
T Consensus 16 KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred eeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 477899999999999999999999744 44665 455 677544
No 137
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=33.05 E-value=1.1e+02 Score=26.46 Aligned_cols=49 Identities=27% Similarity=0.338 Sum_probs=35.2
Q ss_pred eEEEEecCcccHHHHHHHHHHHhCC--CCCCcEEE----eCC--eeeccccchhhhc
Q 004117 672 FVNLKVSASTSIYQLKMMIWESLGV--VKENQILH----KGQ--RIIDQECATLADL 720 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~gi--~p~~Q~L~----~~G--~~L~~d~~TL~~~ 720 (773)
..+|.|++++|..+|=.++.+++|+ .|.+=.|+ .+| +.|.+++.-|.-.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~ 74 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQIQ 74 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHHH
Confidence 5689999999999999999999999 33333553 223 6776666555443
No 138
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=31.95 E-value=96 Score=26.39 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=30.6
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeC
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKG 706 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~ 706 (773)
....+.+.++.|..+|+.+|.++++++.....|.|-
T Consensus 11 ~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 11 ETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 466788999999999999999999998766677664
No 139
>COG5417 Uncharacterized small protein [Function unknown]
Probab=31.53 E-value=1.3e+02 Score=26.04 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=46.7
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCC----Cc-EEEeCCeeeccccchhhhcCCCCCCEEEE
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKE----NQ-ILHKGQRIIDQECATLADLNIFPGDKLWV 730 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~----~Q-~L~~~G~~L~~d~~TL~~~~I~~~~~l~l 730 (773)
.+++-|.++.--+|+.|=.-++|.+.|.-. .| +..-.++-|+ ++.-|.++||..||.|-+
T Consensus 16 g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~lls-gd~kL~d~~IadGD~Lei 80 (81)
T COG5417 16 GGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLS-GDDKLIDYQIADGDILEI 80 (81)
T ss_pred CceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEec-CCceEEeccccCCCEEEe
Confidence 367888999999999999999998876543 23 4555667775 556899999999998864
No 140
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=30.72 E-value=17 Score=39.70 Aligned_cols=44 Identities=23% Similarity=0.180 Sum_probs=0.0
Q ss_pred CcccHHHHHHHHHH----------HhCCCCCCcE-----EEeCCeeeccccchhhhcCCC
Q 004117 679 ASTSIYQLKMMIWE----------SLGVVKENQI-----LHKGQRIIDQECATLADLNIF 723 (773)
Q Consensus 679 ~~~tv~~lK~~I~e----------~~gi~p~~Q~-----L~~~G~~L~~d~~TL~~~~I~ 723 (773)
+++||.+||.++++ +.+||.+--. |.|+-|.+ .|++||++..-.
T Consensus 102 attSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv-~~~ktl~e~l~~ 160 (309)
T PF12754_consen 102 ATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPV-GDSKTLAEVLAD 160 (309)
T ss_dssp ------------------------------------------------------------
T ss_pred CcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccC-CCcCcHHHHHhc
Confidence 47999999999999 8999987766 99999999 689999988765
No 141
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=30.37 E-value=2e+02 Score=24.98 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=39.0
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCC-----CC------CCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGV-----VK------ENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi-----~p------~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
.+..+++. ..||.+|...|.++..- -. ..-++..||+....+ .. .-|.+||.|.+.
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~-~~---~~l~dgdev~i~ 82 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWG-LG---TELKDGDVVAIF 82 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCcc-CC---CCCCCCCEEEEe
Confidence 45677776 89999999999988641 11 124566789877433 21 568999999876
No 142
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=29.63 E-value=1e+02 Score=27.02 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHHHhCCCCCCcEEEe--CCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 681 TSIYQLKMMIWESLGVVKENQILHK--GQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 681 ~tv~~lK~~I~e~~gi~p~~Q~L~~--~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
.|+.+|+.+..++++|+...-+|.. .|..++ |+. -+.-.|.+|..|...
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~Vd-dEe---yF~tLp~nT~lm~L~ 71 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVD-DEE---YFQTLPDNTVLMLLE 71 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBES-SCH---HHCCSSSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEc-cHH---HHhhCCCCCEEEEEC
Confidence 7899999999999999987777765 888884 332 223346777776643
No 143
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=29.42 E-value=1.9e+02 Score=24.70 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=39.7
Q ss_pred ceEEEEecCc-ccHHHHHHHHHHHhC-CCC--CCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSAS-TSIYQLKMMIWESLG-VVK--ENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~-~tv~~lK~~I~e~~g-i~p--~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
.+..+++... .||.+|+..|.++.+ +-. ..-++..||+... + +.-|.+||.|.+.
T Consensus 16 ~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~-~-----~~~l~dgDevai~ 74 (80)
T TIGR01682 16 DEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVT-D-----DALLNEGDEVAFI 74 (80)
T ss_pred CeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcC-C-----CcCcCCCCEEEEe
Confidence 4567888876 899999999999874 111 1235668888773 2 4578899998876
No 144
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=28.95 E-value=93 Score=27.21 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=33.5
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeC
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKG 706 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~ 706 (773)
=+++|.|....+..+|..+|-+++..+|+.-.|.|.
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 478999999999999999999999999999999874
No 145
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=28.22 E-value=1.4e+02 Score=26.27 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=40.9
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEE-eCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILH-KGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~-~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
+.+.+.+....||++|= |.+|||...=-++ .||+... -++-+.+||.|.+.
T Consensus 23 ~~~~~~~~~~~tvkd~I----EsLGVP~tEV~~i~vNG~~v~------~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 23 GPFTHPFDGGATVKDVI----ESLGVPHTEVGLILVNGRPVD------FDYRLKDGDRVAVY 74 (81)
T ss_pred CceEEecCCCCcHHHHH----HHcCCChHHeEEEEECCEECC------CcccCCCCCEEEEE
Confidence 56788999999998654 4599999888665 6998773 24788999999987
No 146
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=27.83 E-value=70 Score=30.32 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=36.0
Q ss_pred EEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhc
Q 004117 675 LKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADL 720 (773)
Q Consensus 675 l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~ 720 (773)
+-|.+++||.++...|..+.+++|.+--|+.++..+ ..++||+++
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp-~~s~~mg~l 89 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTP-AVTATVGDI 89 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccC-CccchHHHH
Confidence 369999999999999999999999985556677544 466777654
No 147
>smart00455 RBD Raf-like Ras-binding domain.
Probab=26.35 E-value=1.1e+02 Score=26.08 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=35.4
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCC--eee
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ--RII 710 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G--~~L 710 (773)
+...+.|-|.+||.++=+.|-++-|+.|+.=.|++.| +.|
T Consensus 10 ~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~l 51 (70)
T smart00455 10 QRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPL 51 (70)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcce
Confidence 5668899999999999999999999999999999855 555
No 148
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=26.26 E-value=52 Score=29.20 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=29.9
Q ss_pred CcccHHHHHHHH-HHHhCCCCCC----cEEEeCCee---eccccchhhhcCCCCCCEEEEEecc
Q 004117 679 ASTSIYQLKMMI-WESLGVVKEN----QILHKGQRI---IDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 679 ~~~tv~~lK~~I-~e~~gi~p~~----Q~L~~~G~~---L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
..+||.+|-.+| ..++|+.... .+++|..-. =....++|+++||..|+.|.+.+..
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~~ 70 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDFD 70 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEETT
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEcC
Confidence 357888888875 3456665522 222222211 1234689999999999999988543
No 149
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=25.94 E-value=1.1e+02 Score=26.72 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=34.5
Q ss_pred ccHHHHHHHHHHHhCCCCCCcEEE--eCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 681 TSIYQLKMMIWESLGVVKENQILH--KGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 681 ~tv~~lK~~I~e~~gi~p~~Q~L~--~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
.|+.+|+.+..++++++...-+|+ -.|.+++ |+.= ..-.|..|+.|+..
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVd-dEeY---F~tLp~nT~l~~l~ 71 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVD-DEEY---FQTLPDNTVLMLLE 71 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEc-cHHH---HhcCCCCcEEEEEC
Confidence 789999999999999986666665 5888883 4322 23346667666643
No 150
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=25.77 E-value=2.6e+02 Score=23.42 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=37.4
Q ss_pred EEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
..+++....||.+|-.+ +|+++..=.+..||+.+. .+.-|.+||.|-+.
T Consensus 16 ~~~~~~~~~tv~~ll~~----l~~~~~~v~v~vNg~iv~------~~~~l~~gD~Veii 64 (70)
T PRK08364 16 KEIEWRKGMKVADILRA----VGFNTESAIAKVNGKVAL------EDDPVKDGDYVEVI 64 (70)
T ss_pred eEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC------CCcCcCCCCEEEEE
Confidence 46778888999977766 689886656678998873 24558999998876
No 151
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=25.08 E-value=1.4e+02 Score=26.52 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=33.8
Q ss_pred EEEecCcccHHHHHHHHHHHhCCCCCCc-EEEeCCeeeccccchhhh
Q 004117 674 NLKVSASTSIYQLKMMIWESLGVVKENQ-ILHKGQRIIDQECATLAD 719 (773)
Q Consensus 674 ~l~vs~~~tv~~lK~~I~e~~gi~p~~Q-~L~~~G~~L~~d~~TL~~ 719 (773)
.+.|++++|+.++..-|..+.++.+.+- -|+.+..-+-..+.|+++
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~ 65 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGN 65 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHH
Confidence 4579999999999999999999998763 555666423223356665
No 152
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=23.05 E-value=2.4e+02 Score=24.48 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHHhCCCCCCcEEEe--CCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 681 TSIYQLKMMIWESLGVVKENQILHK--GQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 681 ~tv~~lK~~I~e~~gi~p~~Q~L~~--~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
.|+.+|+.+..++++++...-+|+. .|..++ |+.= ..-.|.+|+.|+..
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~Vd-dEey---F~tLp~nt~l~~L~ 69 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVD-DEEY---FQTLPDNTELMALE 69 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEc-cHHH---HhcCCCCcEEEEEc
Confidence 7899999999999999977666654 899883 4322 23346677777643
No 153
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=21.57 E-value=1.1e+02 Score=26.99 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=43.2
Q ss_pred EEecCcccHHHHHHHHHHHh-------CCCCCCcEEEeCCe-ee-----ccccchhhhcCCCCCCEEEEEec
Q 004117 675 LKVSASTSIYQLKMMIWESL-------GVVKENQILHKGQR-II-----DQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 675 l~vs~~~tv~~lK~~I~e~~-------gi~p~~Q~L~~~G~-~L-----~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
|+|+++.|+.+|=..|.++- +|.-..-.||+.+- +| .+=+++|.++ +..|+.|.+.+.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD~ 71 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTDP 71 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEET
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEECC
Confidence 68999999999999999873 33445566777663 34 2226889999 999999988743
No 154
>COG5629 Predicted metal-binding protein [Function unknown]
Probab=21.45 E-value=47 Score=35.39 Aligned_cols=88 Identities=23% Similarity=0.462 Sum_probs=56.1
Q ss_pred ccccccCCCCCCCCccccccccHHHHHHHHHHcCCCCCCCCcccchhhHhhcchhhhhhhHHHHHHHHHHHHHHhhhcCC
Q 004117 254 TSIQCLHGKVPESKIGSMKRISSKAWNKFFFKYNGGPALTNDDYCMTCLIDGAHTVVCADSYRDRRKSLKGLADDVLSGK 333 (773)
Q Consensus 254 s~~lC~Hg~l~p~k~~~~k~Vs~~aw~~L~~~ygGgP~l~~~~~C~~C~~~~~~~~~~~~~l~~rr~~~k~l~~~~~~~~ 333 (773)
+-|-|.||...-+....|+++|.+.|..|.. |+-|....+ +.+...-.....+
T Consensus 86 ~~~~Ckq~~~~l~si~s~ndlPse~W~El~D-------------cWsCH~Dy~--------------e~kS~~ggp~t~~ 138 (321)
T COG5629 86 DGFRCKQGNEILHSIRSMNDLPSEGWEELID-------------CWSCHNDYC--------------EFKSMLGGPLTPR 138 (321)
T ss_pred hhhcccccchhhhhhhhhhhCchhhHHHHHH-------------HHhhccchh--------------hhHhhcCCCCCcC
Confidence 4578999998888899999999999999877 788886432 1122211112223
Q ss_pred ccCceEEEehHHHHHHHhccCCCCCCCCCCCCCceeecC
Q 004117 334 LVEGTYYVSKSWLQQWTRRKNLDAPSEADGGPTTSIRCP 372 (773)
Q Consensus 334 ~~~~~y~ISk~WLr~W~k~k~~~~P~~idn~~n~di~C~ 372 (773)
+.++.-+||...|. ....+-+|.+.-.||-.+.|.
T Consensus 139 P~~~~~llg~sy~l----i~~a~legkvaygpNfklhCs 173 (321)
T COG5629 139 PREGGLLLGDSYLL----INDADLEGKVAYGPNFKLHCS 173 (321)
T ss_pred cCCCceEeeeeEEE----echhccCCccccCCCcceeee
Confidence 44555666665544 233344555555667668884
No 155
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=20.45 E-value=87 Score=29.65 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=17.2
Q ss_pred CCeeeccccchhhhcCCCCCCEEEEE
Q 004117 706 GQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 706 ~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
.|+...+|.+||++++...||-|.+-
T Consensus 94 ~g~~~~d~~kTL~~~~F~iGDyidva 119 (120)
T PF06487_consen 94 SGRKGPDDNKTLADLRFVIGDYIDVA 119 (120)
T ss_dssp TTB--TTTTSBCGGGT--TT-EEEEE
T ss_pred CCCCCCCcccCHhhCCcccCCEEEEe
Confidence 34444489999999999999998764
No 156
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=20.31 E-value=1.9e+02 Score=24.54 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=28.8
Q ss_pred EEEecCcccHHHHHHHHHHHhCCCCCCcEEEeC
Q 004117 674 NLKVSASTSIYQLKMMIWESLGVVKENQILHKG 706 (773)
Q Consensus 674 ~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~ 706 (773)
.+.+.++.|..+|+.+|.+++|+++.+-.|.|.
T Consensus 15 ~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 15 IISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp EEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 478889999999999999999999777777763
Done!