Query 004117
Match_columns 773
No_of_seqs 452 out of 1861
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:49:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nb8_A Ubiquitin carboxyl-term 99.8 8.8E-20 3E-24 199.9 10.2 134 2-191 211-345 (353)
2 2y6e_A Ubiquitin carboxyl-term 99.8 1.4E-18 4.7E-23 191.0 11.3 71 2-73 270-341 (367)
3 2f1z_A Ubiquitin carboxyl-term 99.8 5.6E-19 1.9E-23 203.5 8.3 134 2-191 380-514 (522)
4 3nhe_A Ubiquitin carboxyl-term 99.7 3.5E-18 1.2E-22 185.2 11.4 70 2-73 255-325 (348)
5 1vjv_A Ubiquitin carboxyl-term 99.7 1.7E-18 5.6E-23 193.6 7.2 47 28-74 343-390 (415)
6 2ayn_A Ubiquitin carboxyl-term 99.7 2.2E-18 7.4E-23 191.5 7.1 72 2-74 250-370 (404)
7 2gfo_A Ubiquitin carboxyl-term 99.7 4.7E-18 1.6E-22 189.2 9.4 71 2-73 307-378 (396)
8 3i3t_A Ubiquitin carboxyl-term 99.7 3E-17 1E-21 178.3 6.3 68 2-73 265-333 (355)
9 3mhs_A Ubiquitin carboxyl-term 99.7 6.5E-17 2.2E-21 183.9 8.6 70 2-73 378-456 (476)
10 3plu_A Ubiquitin-like modifier 99.6 3.4E-15 1.2E-19 131.1 8.0 62 669-731 30-91 (93)
11 3ihp_A Ubiquitin carboxyl-term 99.5 7.5E-15 2.6E-19 177.6 9.6 42 30-73 796-837 (854)
12 4ajy_B Transcription elongatio 99.5 7.9E-15 2.7E-19 134.4 7.4 77 667-744 8-93 (118)
13 2fnj_B Transcription elongatio 99.5 8.4E-15 2.9E-19 134.7 7.6 77 667-744 8-93 (118)
14 1wju_A NEDD8 ultimate buster-1 99.5 3.6E-14 1.2E-18 126.9 8.3 61 671-732 30-90 (100)
15 1uh6_A Ubiquitin-like 5; beta- 99.5 5.1E-14 1.7E-18 125.9 7.5 60 671-731 39-98 (100)
16 3phx_B Ubiquitin-like protein 99.4 1.7E-13 5.8E-18 117.3 8.6 64 670-734 14-77 (79)
17 4dbg_A Ranbp-type and C3HC4-ty 99.4 1.3E-13 4.5E-18 124.3 8.1 63 671-734 37-100 (105)
18 4a3p_A Ubiquitin carboxyl-term 99.4 3.7E-12 1.3E-16 130.3 19.8 188 445-734 8-209 (217)
19 2kk8_A Uncharacterized protein 99.4 1.9E-13 6.4E-18 119.1 7.9 63 670-733 20-83 (84)
20 2kj6_A Tubulin folding cofacto 99.4 3.4E-13 1.2E-17 120.5 7.6 63 671-733 27-95 (97)
21 2kjr_A CG11242; UBL, ubiquitin 99.4 4.1E-13 1.4E-17 119.6 7.8 62 671-732 28-94 (95)
22 4fbj_B NEDD8; effector-HOST ta 99.4 6.9E-13 2.3E-17 116.4 8.0 64 670-734 10-73 (88)
23 1v2y_A 3300001G02RIK protein; 99.4 4.9E-13 1.7E-17 120.9 6.6 72 669-740 16-102 (105)
24 4b6w_A Tubulin-specific chaper 99.4 4.1E-13 1.4E-17 117.4 5.9 63 671-734 15-84 (86)
25 3jyu_A Ubiquitin carboxyl-term 99.4 1.6E-11 5.5E-16 126.7 18.7 191 445-734 17-221 (231)
26 2faz_A Ubiquitin-like containi 99.4 1.1E-12 3.9E-17 111.8 8.2 62 671-733 13-76 (78)
27 4eew_A Large proline-rich prot 99.4 9.3E-13 3.2E-17 115.2 7.8 61 670-732 27-87 (88)
28 2uyz_B Small ubiquitin-related 99.4 7.6E-13 2.6E-17 113.3 7.1 63 671-734 14-76 (79)
29 3v6c_B Ubiquitin; structural g 99.4 1.3E-12 4.4E-17 115.2 8.5 63 670-733 27-89 (91)
30 2lxa_A Ubiquitin-like protein 99.4 4.4E-13 1.5E-17 117.4 5.4 63 671-734 12-78 (87)
31 2hj8_A Interferon-induced 17 k 99.3 1E-12 3.6E-17 115.1 7.3 64 670-734 14-77 (88)
32 2kan_A Uncharacterized protein 99.3 1.5E-12 5E-17 115.8 8.3 63 671-734 25-88 (94)
33 4dwf_A HLA-B-associated transc 99.3 1.3E-12 4.4E-17 114.8 7.8 63 670-734 15-77 (90)
34 2bwf_A Ubiquitin-like protein 99.3 1.7E-12 5.9E-17 110.1 8.3 62 671-733 14-75 (77)
35 4a20_A Ubiquitin-like protein 99.3 1.1E-12 3.9E-17 117.3 7.0 62 672-734 33-96 (98)
36 1wyw_B Ubiquitin-like protein 99.3 1.4E-12 4.9E-17 116.5 7.7 64 670-734 31-94 (97)
37 3dbh_I NEDD8; cell cycle, acti 99.3 1.7E-12 5.7E-17 113.2 7.9 64 670-734 22-85 (88)
38 2l7r_A Ubiquitin-like protein 99.3 1.6E-12 5.6E-17 115.2 8.0 64 670-734 27-90 (93)
39 1ndd_A NEDD8, protein (ubiquit 99.3 2.7E-12 9.2E-17 108.3 8.7 64 670-734 10-73 (76)
40 2wyq_A HHR23A, UV excision rep 99.3 2.9E-12 9.8E-17 111.1 8.7 64 670-734 15-81 (85)
41 2kd0_A LRR repeats and ubiquit 99.3 2.3E-12 7.7E-17 112.4 7.9 63 670-733 21-83 (85)
42 3m62_B UV excision repair prot 99.3 1.8E-12 6E-17 117.8 6.9 64 670-734 11-74 (106)
43 3n3k_B Ubiquitin; hydrolase, p 99.3 3.1E-12 1.1E-16 110.7 7.8 63 671-734 14-76 (85)
44 1wy8_A NP95-like ring finger p 99.3 4.5E-12 1.5E-16 111.0 8.9 63 671-734 19-82 (89)
45 1v5o_A 1700011N24RIK protein; 99.3 2.4E-12 8.1E-17 116.1 7.3 64 671-734 22-85 (102)
46 1wh3_A 59 kDa 2'-5'-oligoadeny 99.3 3.4E-12 1.2E-16 111.2 8.0 63 671-734 18-80 (87)
47 1sif_A Ubiquitin; hydrophobic 99.3 3.5E-12 1.2E-16 111.8 8.1 64 670-734 19-82 (88)
48 2dzi_A Ubiquitin-like protein 99.3 3.5E-12 1.2E-16 109.3 7.9 62 671-733 18-79 (81)
49 1uel_A HHR23B, UV excision rep 99.3 4.9E-12 1.7E-16 112.5 8.9 64 670-734 10-76 (95)
50 2kdb_A Homocysteine-responsive 99.3 2.3E-12 7.8E-17 115.6 6.3 59 672-731 37-99 (99)
51 4hcn_B Polyubiquitin, ubiquiti 99.3 3.7E-12 1.3E-16 114.0 7.6 64 670-734 32-95 (98)
52 1ttn_A DC-UBP, dendritic cell- 99.3 4.8E-12 1.7E-16 114.9 8.3 64 670-734 33-96 (106)
53 3a9j_A Ubiquitin; protein comp 99.3 6.5E-12 2.2E-16 106.0 8.5 63 671-734 11-73 (76)
54 3m63_B Ubiquitin domain-contai 99.3 1.7E-12 5.8E-17 116.9 5.1 63 670-733 37-99 (101)
55 3mtn_B UBA80, ubcep1, ubiquiti 99.3 6.6E-12 2.2E-16 108.5 8.2 63 671-734 14-76 (85)
56 3k9o_B Ubiquitin, UBB+1; E2-25 99.3 6.6E-12 2.3E-16 111.5 8.2 63 671-734 12-74 (96)
57 1wgd_A Homocysteine-responsive 99.3 5E-12 1.7E-16 111.9 7.3 62 672-734 21-86 (93)
58 2klc_A Ubiquilin-1; ubiquitin- 99.3 7.4E-12 2.5E-16 112.7 8.4 63 671-734 35-97 (101)
59 1we7_A SF3A1 protein; structur 99.3 7.1E-12 2.4E-16 115.5 8.4 66 668-734 43-108 (115)
60 1yqb_A Ubiquilin 3; structural 99.3 8.5E-12 2.9E-16 112.1 8.2 62 672-734 33-94 (100)
61 1se9_A Ubiquitin family; ubiqu 99.3 4.5E-12 1.5E-16 117.9 6.4 63 671-734 27-103 (126)
62 1wx8_A Riken cDNA 4931431F19; 99.3 4.3E-12 1.5E-16 112.9 6.1 64 670-734 26-89 (96)
63 1v6e_A Cytoskeleton-associated 99.3 5.1E-12 1.8E-16 112.4 6.4 64 671-734 19-88 (95)
64 1wgh_A Ubiquitin-like 3, HCG-1 99.3 7.4E-12 2.5E-16 115.2 7.6 64 670-734 26-99 (116)
65 2kdi_A Ubiquitin, vacuolar pro 99.2 9.5E-12 3.2E-16 114.5 8.0 64 670-734 19-82 (114)
66 2dzm_A FAS-associated factor 1 99.2 6.3E-12 2.2E-16 112.8 6.6 64 669-734 17-82 (100)
67 1wxv_A BAG-family molecular ch 99.2 1.4E-11 4.7E-16 108.8 8.4 64 671-734 17-85 (92)
68 1we6_A Splicing factor, putati 99.2 1.1E-11 3.8E-16 113.4 8.0 64 670-734 40-104 (111)
69 2gow_A HCG-1 protein, ubiquiti 99.2 7.1E-12 2.4E-16 116.9 6.3 64 670-734 27-100 (125)
70 1yx5_B Ubiquitin; proteasome, 99.2 1.6E-11 5.6E-16 109.6 8.5 63 671-734 11-73 (98)
71 1v5t_A 8430435I17RIK protein; 99.2 9.3E-12 3.2E-16 109.6 6.7 64 670-734 16-83 (90)
72 1j8c_A Ubiquitin-like protein 99.2 1.6E-11 5.4E-16 114.9 8.4 64 670-734 41-104 (125)
73 3vdz_A Ubiquitin-40S ribosomal 99.2 1.6E-11 5.6E-16 112.4 8.2 63 671-734 46-108 (111)
74 3b1l_X E3 ubiquitin-protein li 98.8 1.3E-12 4.5E-17 110.8 0.0 62 671-733 11-72 (76)
75 1wgg_A Ubiquitin carboxyl-term 99.2 8.9E-12 3E-16 111.2 5.4 63 670-734 16-79 (96)
76 3rt3_B Ubiquitin-like protein 99.2 2.2E-11 7.7E-16 118.1 8.6 64 670-734 91-154 (159)
77 1wx7_A Ubiquilin 3; ubiquitin- 99.2 2.2E-11 7.7E-16 110.4 7.9 62 672-734 28-89 (106)
78 1v86_A DNA segment, CHR 7, way 99.2 9.9E-12 3.4E-16 110.6 5.4 63 670-734 26-88 (95)
79 3l0w_B Monoubiquitinated proli 99.2 2.8E-11 9.5E-16 119.0 9.1 64 670-734 10-73 (169)
80 2daf_A FLJ35834 protein; hypot 99.2 2.7E-11 9.2E-16 110.4 8.1 63 671-734 27-89 (118)
81 2ojr_A Ubiquitin; lanthide-bin 99.2 5.6E-11 1.9E-15 108.7 8.9 63 671-734 46-108 (111)
82 1t0y_A Tubulin folding cofacto 99.2 3.1E-11 1.1E-15 112.4 7.0 63 672-734 19-87 (122)
83 2dzj_A Synaptic glycoprotein S 99.2 2.2E-11 7.5E-16 106.9 5.6 59 673-732 25-87 (88)
84 3q3f_A Ribonuclease/ubiquitin 99.2 3.9E-11 1.3E-15 119.7 7.9 64 670-734 115-178 (189)
85 3rt3_B Ubiquitin-like protein 99.1 6E-11 2E-15 115.1 8.1 64 670-734 12-77 (159)
86 3u5e_m 60S ribosomal protein L 99.1 4.9E-12 1.7E-16 118.8 0.0 63 671-734 11-73 (128)
87 3u30_A Ubiquitin, linear DI-ub 99.1 5.7E-11 1.9E-15 116.9 7.5 64 670-734 106-169 (172)
88 1x1m_A Ubiquitin-like protein 99.1 7.8E-11 2.7E-15 107.1 7.6 63 671-734 26-100 (107)
89 3u30_A Ubiquitin, linear DI-ub 99.1 8E-11 2.7E-15 115.9 8.3 64 670-734 30-93 (172)
90 1wf9_A NPL4 family protein; be 99.1 4.8E-11 1.6E-15 108.6 5.8 64 671-734 17-95 (107)
91 3u5c_f 40S ribosomal protein S 99.1 7.4E-12 2.5E-16 120.8 0.0 63 671-734 11-73 (152)
92 1w6v_A Ubiquitin carboxyl-term 99.1 1.9E-10 6.5E-15 109.6 8.4 86 210-297 32-139 (141)
93 1wia_A Hypothetical ubiquitin- 99.1 9.5E-11 3.2E-15 104.0 5.6 61 671-734 18-78 (95)
94 3b08_A Polyubiquitin-C, ubiqui 99.0 2.9E-10 1E-14 108.8 8.5 64 670-734 10-73 (152)
95 3b08_A Polyubiquitin-C, ubiqui 99.0 3.4E-10 1.2E-14 108.3 8.3 63 671-734 87-149 (152)
96 2kzr_A Ubiquitin thioesterase 99.0 3.4E-10 1.2E-14 98.7 5.1 63 672-734 11-78 (86)
97 3ai5_A Yeast enhanced green fl 99.0 9.5E-10 3.3E-14 117.2 8.5 63 670-733 243-305 (307)
98 4a3p_A Ubiquitin carboxyl-term 98.9 1.4E-09 4.6E-14 111.2 8.2 85 208-294 6-112 (217)
99 2xzm_9 RPS31E; ribosome, trans 98.9 1.1E-10 3.6E-15 115.9 0.0 59 670-734 10-68 (189)
100 2io1_B Small ubiquitin-related 98.9 2.4E-09 8.3E-14 94.9 7.6 65 669-734 16-80 (94)
101 1wjn_A Tubulin-folding protein 98.9 3.8E-09 1.3E-13 94.1 7.4 65 670-734 22-93 (97)
102 3shq_A UBLCP1; phosphatase, hy 98.8 2E-09 6.8E-14 116.1 6.2 65 669-734 13-80 (320)
103 1w6v_A Ubiquitin carboxyl-term 98.8 1.7E-08 5.8E-13 96.2 11.6 83 460-557 44-134 (141)
104 1wm3_A Ubiquitin-like protein 98.8 7.5E-09 2.6E-13 87.1 7.5 62 669-731 10-71 (72)
105 3jyu_A Ubiquitin carboxyl-term 98.8 3.7E-09 1.3E-13 109.0 6.7 85 208-294 15-121 (231)
106 2io0_B Small ubiquitin-related 98.7 1.6E-08 5.3E-13 89.2 7.7 65 669-734 14-78 (91)
107 1oqy_A HHR23A, UV excision rep 98.7 5.7E-09 2E-13 114.2 5.7 64 670-734 17-84 (368)
108 3a4r_A Nfatc2-interacting prot 98.7 2.7E-08 9.1E-13 85.3 8.7 59 672-731 20-78 (79)
109 2d07_B Ubiquitin-like protein 98.7 3.8E-08 1.3E-12 87.1 7.6 64 670-734 27-90 (93)
110 1wz0_A Ubiquitin-like protein 98.6 4.1E-08 1.4E-12 88.6 6.9 64 670-734 34-97 (104)
111 2k8h_A Small ubiquitin protein 98.6 4.9E-08 1.7E-12 88.9 6.6 64 670-734 36-99 (110)
112 2eke_C Ubiquitin-like protein 98.6 6.7E-08 2.3E-12 87.4 7.0 64 670-734 40-103 (106)
113 2vhf_A Ubiquitin carboxyl-term 98.2 1.3E-06 4.6E-11 94.5 6.2 35 29-68 275-310 (374)
114 3kyd_D Small ubiquitin-related 98.1 4.6E-06 1.6E-10 76.2 8.1 64 670-734 50-113 (115)
115 3pge_A SUMO-modified prolifera 98.1 4.3E-06 1.5E-10 83.7 7.1 65 669-734 37-101 (200)
116 4efo_A Serine/threonine-protei 98.0 4E-06 1.4E-10 73.8 5.4 41 671-711 24-64 (94)
117 2pjh_A Protein NPL4, nuclear p 97.9 4.9E-06 1.7E-10 71.4 3.7 61 671-731 14-78 (80)
118 3tix_A Ubiquitin-like protein 97.9 1.1E-05 3.8E-10 79.2 6.1 65 669-734 65-129 (207)
119 3v7o_A Minor nucleoprotein VP3 97.5 1.8E-05 6E-10 78.9 0.0 65 669-734 29-93 (227)
120 3goe_A DNA repair protein RAD6 97.4 0.00052 1.8E-08 57.6 8.6 62 671-733 20-82 (82)
121 3uf8_A Ubiquitin-like protein 96.9 0.0013 4.4E-08 66.5 7.0 64 670-734 30-93 (209)
122 2jxx_A Nfatc2-interacting prot 96.7 0.0036 1.2E-07 55.4 7.7 59 672-731 38-96 (97)
123 2kc2_A Talin-1, F1; FERM, adhe 96.6 0.0019 6.6E-08 59.9 5.1 60 671-731 22-120 (128)
124 3ix6_A TS, tsase, thymidylate 96.5 0.0004 1.4E-08 75.2 0.0 63 671-734 31-93 (360)
125 4da1_A Protein phosphatase 1K, 96.0 0.0012 4.1E-08 72.9 0.0 63 671-734 40-102 (389)
126 3qx1_A FAS-associated factor 1 95.7 0.02 6.7E-07 49.1 6.7 61 672-733 19-83 (84)
127 2l76_A Nfatc2-interacting prot 95.5 0.035 1.2E-06 48.6 7.4 62 670-732 30-91 (95)
128 2al3_A TUG long isoform; TUG U 95.2 0.051 1.8E-06 47.1 7.5 63 671-734 20-82 (90)
129 2dzk_A UBX domain-containing p 94.5 0.088 3E-06 47.4 7.4 63 671-733 24-90 (109)
130 2bps_A YUKD protein; ubiquitin 93.8 0.088 3E-06 44.9 5.6 60 670-730 16-80 (81)
131 1wj4_A KIAA0794 protein; UBX d 92.1 0.21 7.2E-06 46.0 6.0 63 671-734 54-120 (124)
132 4e71_A Plexin-B2, MM1; transme 92.0 0.26 8.9E-06 44.4 6.3 60 672-731 25-108 (111)
133 2r2o_A Plexin-B1; effector dom 92.0 0.34 1.2E-05 45.1 7.3 63 671-734 41-129 (138)
134 2cr5_A Reproduction 8; UBX dom 91.5 0.47 1.6E-05 42.5 7.5 62 672-734 35-99 (109)
135 4e74_A Plexin-A4; RBD, structu 90.2 0.79 2.7E-05 41.6 7.6 62 671-732 27-113 (117)
136 3h6n_A Plexin-D1; structural g 89.5 0.89 3E-05 41.8 7.4 64 671-734 17-105 (127)
137 3kuz_A Plexin-C1; structural g 88.2 0.71 2.4E-05 42.3 5.8 61 671-731 39-124 (126)
138 1s3s_G P47 protein; AAA ATPase 87.6 0.85 2.9E-05 42.1 6.1 57 672-728 64-123 (127)
139 2kvr_A Ubiquitin carboxyl-term 80.8 1.5 5.1E-05 40.6 4.5 33 673-705 58-90 (130)
140 3onh_A Ubiquitin-activating en 76.6 4.7 0.00016 37.0 6.3 60 674-734 9-80 (127)
141 3hm6_X Plexin-B1; structural g 70.6 6.8 0.00023 45.0 7.1 64 671-734 274-362 (644)
142 3ivf_A Talin-1; FERM domain, c 70.1 6.4 0.00022 42.5 6.7 61 670-731 12-82 (371)
143 3ig3_A Plxna3 protein; plexin 67.7 8.9 0.0003 43.9 7.3 64 671-734 247-335 (627)
144 1oey_A P67-PHOX, neutrophil cy 66.2 20 0.0007 30.4 7.6 37 671-707 14-50 (83)
145 1ryj_A Unknown; beta/alpha pro 52.0 46 0.0016 26.8 7.2 50 672-731 15-64 (70)
146 2juo_A GA-binding protein alph 50.7 32 0.0011 29.2 6.0 60 674-734 6-65 (89)
147 2daj_A KIAA0977 protein, COBL- 48.3 21 0.00073 30.4 4.6 57 673-733 23-82 (91)
148 4eut_A Serine/threonine-protei 46.9 19 0.00067 38.5 5.5 40 671-710 322-361 (396)
149 2ylm_A Ubiquitin carboxyl-term 46.3 14 0.00049 42.0 4.4 32 673-704 38-69 (530)
150 1tyg_B YJBS; alpha beta barrel 44.9 53 0.0018 28.0 6.7 55 671-731 26-81 (87)
151 1y8x_B Ubiquitin-activating en 44.4 27 0.00092 30.6 4.9 60 672-731 6-82 (98)
152 2l32_A Small archaeal modifier 42.4 32 0.0011 28.3 4.8 49 672-731 12-60 (74)
153 2ylm_A Ubiquitin carboxyl-term 40.1 23 0.0008 40.2 4.9 63 672-734 148-218 (530)
154 3qa8_A MGC80376 protein; kinas 35.7 26 0.00089 41.1 4.5 48 673-720 324-371 (676)
155 2kl0_A Putative thiamin biosyn 34.2 76 0.0026 25.9 5.9 51 674-731 9-59 (73)
156 1f0z_A THis protein; ubiquitin 32.3 72 0.0025 25.1 5.3 52 674-731 9-60 (66)
157 3po0_A Small archaeal modifier 30.8 1.7E+02 0.0058 24.1 7.8 55 671-731 18-83 (89)
158 3ge3_C Toluene-4-monooxygenase 29.6 1.9E+02 0.0064 24.5 7.4 60 672-732 16-82 (84)
159 2zjd_A Microtubule-associated 29.4 2.3E+02 0.0079 25.9 8.8 47 674-720 56-103 (130)
160 2cu3_A Unknown function protei 27.7 97 0.0033 24.2 5.3 51 674-731 8-58 (64)
161 4gdk_A Ubiquitin-like protein 27.2 85 0.0029 26.9 5.2 46 674-719 23-69 (91)
162 1rws_A Hypothetical protein PF 26.4 42 0.0014 27.5 3.0 51 671-731 21-71 (77)
163 2k5p_A THis protein, thiamine- 25.9 79 0.0027 26.2 4.6 52 674-731 9-63 (78)
164 1vjk_A Molybdopterin convertin 23.8 2E+02 0.0067 24.4 7.0 55 671-731 27-92 (98)
165 3u52_E Phenol hydroxylase comp 22.5 1.9E+02 0.0065 26.0 6.6 64 671-734 38-110 (119)
166 2inc_C TOUB protein; DIIRON, 4 22.3 3E+02 0.01 23.2 7.3 59 672-731 14-80 (83)
167 1ip9_A BEM1 protein; ubiquitin 21.7 1.2E+02 0.004 25.8 4.8 32 671-704 22-53 (85)
168 3mp2_A Non-structural protein 21.6 80 0.0027 31.4 4.4 33 37-74 164-196 (211)
169 2v1y_A Phosphatidylinositol-4, 21.4 64 0.0022 28.7 3.3 60 671-731 30-102 (108)
170 2r2q_A Gamma-aminobutyric acid 20.8 1.1E+02 0.0036 27.2 4.7 46 674-720 47-93 (110)
No 1
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.79 E-value=8.8e-20 Score=199.94 Aligned_cols=134 Identities=27% Similarity=0.433 Sum_probs=97.2
Q ss_pred ccccCcceecCCcccCCCCcCCCC-CCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCCCCCCCC
Q 004117 2 KKKITSPFCFPGELNMQRRLSEPS-QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEG 80 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~~~-~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~~~~~~~ 80 (773)
+.|+++.|.||..|||++|+.... .....|+|+|||+|.|+ +++|||+|||++..+++||.|||+.|++++...
T Consensus 211 ~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~---- 285 (353)
T 1nb8_A 211 NIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEE---- 285 (353)
T ss_dssp -CCCCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEESS-TTCCCEEEEECTTSSSCCEEEETTEEEECCHHH----
T ss_pred eEecCcEEECCCeeehhhhhcccCCCCCceEEEEEEEEEeCC-CCCcEEEEEEecCCCCCEEEEECcceEECCHHH----
Confidence 579999999999999999997642 33689999999999999 799999999998778999999999999998431
Q ss_pred CCCCCCcccccCCcccCCccccccccCCCCcccCCCCccccCCCccccccCCceEEEEEEecCcccccccccccccccch
Q 004117 81 SSSSGSKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNM 160 (773)
Q Consensus 81 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~~~~~~~~~~~~~~ 160 (773)
+..+.+| |.. .......+.+||||||+|.+... +++.+
T Consensus 286 --------v~~~~~g--------------g~~-----------~~~~~~~~~~aYiLfY~r~~~~~-----~~~~~---- 323 (353)
T 1nb8_A 286 --------AIEHNYG--------------GHD-----------DDLSVRHCTNAYMLVYIRESKLS-----EVLQA---- 323 (353)
T ss_dssp --------HTGGGSC--------------CC------------------CCEEEEEEEEEETTTHH-----HHTCC----
T ss_pred --------HHHHhcC--------------CCc-----------cccccCcCCeEEEEEEEECchhh-----hhhcc----
Confidence 1111221 000 00001246789999999987542 11111
Q ss_pred hhhhhhhccCCCCCcchhHHHHHHHHHHHHh
Q 004117 161 EIESEMIFFNDDIFLPSHLGKDIKELNRSYL 191 (773)
Q Consensus 161 ~~~~~~~~~~~~~~lP~~l~~~V~~~N~~~~ 191 (773)
-....+|+++.+.++++|..-+
T Consensus 324 ---------~~~~~~p~~~~~~~~~~~~~~~ 345 (353)
T 1nb8_A 324 ---------VTDHDIPQQLVERLQEEKRIEA 345 (353)
T ss_dssp ---------CCGGGSCHHHHHHHHHHHHHHH
T ss_pred ---------cCccccCHHHHHHHHHHHHHHH
Confidence 1224689999999999887655
No 2
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=190.97 Aligned_cols=71 Identities=37% Similarity=0.583 Sum_probs=65.9
Q ss_pred ccccCcceecCC-cccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeC
Q 004117 2 KKKITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 73 (773)
Q Consensus 2 rkKi~~~i~FP~-~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~ 73 (773)
+.|+++.|.||. .|||++|+..+......|+|+|||+|.|+ +++|||+||||+..+++||.|||+.|++++
T Consensus 270 ~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~ 341 (367)
T 2y6e_A 270 RDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDSNVSLAS 341 (367)
T ss_dssp EEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECS-SSSCEEEEEEECTTTCCEEEEETTEEEECC
T ss_pred ceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCC-CCCCeeeEEEEcCCCCeEEEECCCCceECC
Confidence 579999999997 79999999887666789999999999998 899999999999778999999999999997
No 3
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.75 E-value=5.6e-19 Score=203.46 Aligned_cols=134 Identities=27% Similarity=0.433 Sum_probs=96.3
Q ss_pred ccccCcceecCCcccCCCCcCCCC-CCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCCCCCCCC
Q 004117 2 KKKITSPFCFPGELNMQRRLSEPS-QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEG 80 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~~~-~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~~~~~~~ 80 (773)
+.|+++.|.||.+|||++|+.... .....|+|+|||+|.|. +++|||+||||+..+++||+|||+.|++++...
T Consensus 380 ~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~---- 454 (522)
T 2f1z_A 380 NIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEE---- 454 (522)
T ss_dssp EEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEECS-SSCSEEEEEECTTSSSCCEEEETTEEEECCHHH----
T ss_pred ceEcCcEEeCCCeecchhhhccccCCCCcEEEEEEEEEeccc-CCCceEEEEEecCCCCCEEEEECceeEECCHHH----
Confidence 579999999999999999997642 23689999999999999 799999999998778999999999999998431
Q ss_pred CCCCCCcccccCCcccCCccccccccCCCCcccCCCCccccCCCccccccCCceEEEEEEecCcccccccccccccccch
Q 004117 81 SSSSGSKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNM 160 (773)
Q Consensus 81 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~~~~~~~~~~~~~~ 160 (773)
+..+.+| |.. .......+.+||||||+|.+... +++.+
T Consensus 455 --------v~~~~~G--------------g~~-----------~~~~~~~~~~aYiLfY~r~~~~~-----~~~~~---- 492 (522)
T 2f1z_A 455 --------AIEHNYG--------------GHD-----------DDLSVRHCTNAYMLVYIRESKLS-----EVLQA---- 492 (522)
T ss_dssp --------HSTTSSC--------------CC-------------------CEEEEEEEEEETTSHH-----HHTCC----
T ss_pred --------HHHhhcC--------------CCc-----------cccccCcCCceEEEEEEECCchH-----Hhhcc----
Confidence 2222222 000 00001236789999999987542 11111
Q ss_pred hhhhhhhccCCCCCcchhHHHHHHHHHHHHh
Q 004117 161 EIESEMIFFNDDIFLPSHLGKDIKELNRSYL 191 (773)
Q Consensus 161 ~~~~~~~~~~~~~~lP~~l~~~V~~~N~~~~ 191 (773)
-....+|++|.+.++++|+.-+
T Consensus 493 ---------~~~~~ip~~~~~~~~~e~~~~~ 514 (522)
T 2f1z_A 493 ---------VTDHDIPQQLVERLQEEKRIEA 514 (522)
T ss_dssp ---------CCTTTSCSHHHHHHHHTTTCC-
T ss_pred ---------cCccCCCHHHHHHHHHHHHHHH
Confidence 1234699999999888775443
No 4
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.74 E-value=3.5e-18 Score=185.25 Aligned_cols=70 Identities=34% Similarity=0.632 Sum_probs=64.3
Q ss_pred ccccCcceecC-CcccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeC
Q 004117 2 KKKITSPFCFP-GELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 73 (773)
Q Consensus 2 rkKi~~~i~FP-~~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~ 73 (773)
+.|+++.|.|| ..|||++|+..... ...|+|+|||+|.|+ +++|||+||||++.+++||+|||+.|++++
T Consensus 255 ~~K~~~~v~fp~~~ldl~~~~~~~~~-~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~ 325 (348)
T 3nhe_A 255 TSKLTTFVNFPLRDLDLREFASENTN-HAVYNLYAVSNHSGT-TMGGHYTAYCRSPGTGEWHTFNDSSVTPMS 325 (348)
T ss_dssp CCBCCCCEECCSSCEECGGGBCTTCC-CCEEEEEEEEEEEEC-SSCEEEEEEEECTTTCCEEEEETTEEEEEC
T ss_pred eeecCcceeccCCcCCHhhhcCCCCC-CCcEEEEEEEEccCC-CCCcccEEEEccCCCCcEEEEeCCCceECC
Confidence 57999999999 57999999977554 689999999999996 899999999999888999999999999998
No 5
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.73 E-value=1.7e-18 Score=193.57 Aligned_cols=47 Identities=36% Similarity=0.809 Sum_probs=43.7
Q ss_pred CcceEEEEEEEeecCCCCCceEEEEEEc-CCCCcEEEEcCcceeeeCC
Q 004117 28 DLIYDLSAVLIHKGTAVNSGHYIALIKD-ENTGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 28 ~~~Y~L~aVliH~G~sa~sGHY~a~ik~-~~~~~W~~FdD~~V~~~~~ 74 (773)
...|+|+|||+|.|.++++|||+||||+ ..+++||+|||+.|+.++.
T Consensus 343 ~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~ 390 (415)
T 1vjv_A 343 SCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEK 390 (415)
T ss_dssp SSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECH
T ss_pred CceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCH
Confidence 4789999999999977999999999998 6789999999999999983
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.72 E-value=2.2e-18 Score=191.48 Aligned_cols=72 Identities=35% Similarity=0.552 Sum_probs=63.5
Q ss_pred ccccCcceecCCcccCCCCcCCC-------------------------------------------------CCCCcceE
Q 004117 2 KKKITSPFCFPGELNMQRRLSEP-------------------------------------------------SQLDLIYD 32 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~~-------------------------------------------------~~~~~~Y~ 32 (773)
+.|+++.|.||..|||.+|+... ......|+
T Consensus 250 ~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 329 (404)
T 2ayn_A 250 NAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYD 329 (404)
T ss_dssp CCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEE
T ss_pred eeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcCCCceEE
Confidence 58999999999999999998531 11258899
Q ss_pred EEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCC
Q 004117 33 LSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 33 L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~ 74 (773)
|+|||+|.|.++++|||+||||+ .+++||.|||+.|+.++.
T Consensus 330 L~avv~H~G~s~~~GHY~a~v~~-~~~~W~~fnD~~V~~v~~ 370 (404)
T 2ayn_A 330 LQAVLTHQGRSSSSGHYVSWVKR-KQDEWIKFDDDKVSIVTP 370 (404)
T ss_dssp EEEEEEEESSSTTSSEEEEEEEE-ETTEEEEEBTTBCCCBCH
T ss_pred EEEEEEecCCCCCCCCeEEEEEC-CCCeEEEeecccceecCH
Confidence 99999999988999999999998 588999999999999983
No 7
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.72 E-value=4.7e-18 Score=189.16 Aligned_cols=71 Identities=31% Similarity=0.591 Sum_probs=64.9
Q ss_pred ccccCcceecCC-cccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeC
Q 004117 2 KKKITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 73 (773)
Q Consensus 2 rkKi~~~i~FP~-~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~ 73 (773)
+.|+++.|.||. .|||++|+..+......|+|+|||+|.| ++++|||+|||++..+++||.|||+.|++++
T Consensus 307 ~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~ 378 (396)
T 2gfo_A 307 KQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDIS 378 (396)
T ss_dssp EEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEEEEETTEEEECC
T ss_pred ceecCceEecchhhccccccccCCCCCCceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEEEEeCCCeEECC
Confidence 479999999995 6999999987655578999999999999 5999999999999778999999999999997
No 8
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.67 E-value=3e-17 Score=178.31 Aligned_cols=68 Identities=31% Similarity=0.481 Sum_probs=58.9
Q ss_pred ccccCcceecCC-cccCCCCcCCCCCCCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeC
Q 004117 2 KKKITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 73 (773)
Q Consensus 2 rkKi~~~i~FP~-~LDm~~~~~~~~~~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~ 73 (773)
.+|++..|.||. .|||.+|+..... ...|+|+|||+|.|+ +++|||+||||+ .+.||+|||+.|++++
T Consensus 265 ~~K~~~~v~fp~~~l~l~~~~~~~~~-~~~Y~L~avv~H~G~-~~~GHY~~~~~~--~~~W~~~nD~~V~~v~ 333 (355)
T 3i3t_A 265 IKKSSVGVDFPLQRLSLGDFASDKAG-SPVYQLYALCNHSGS-VHYGHYTALCRC--QTGWHVYNDSRVSPVS 333 (355)
T ss_dssp CEECCCCCBCCSSCEECGGGBC-----CCEEEEEEEEEEEEE-TTEEEEEEEEEE--TTEEEEEETTEEEEEC
T ss_pred ceECCcceeCCccccCchhhccCCCC-CcceEEEEEEEecCC-CCCCeEEEEEEc--CCeEEEEcCCCcEECC
Confidence 479999999995 6999999977554 689999999999996 899999999997 4679999999999998
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.66 E-value=6.5e-17 Score=183.92 Aligned_cols=70 Identities=43% Similarity=0.751 Sum_probs=62.9
Q ss_pred ccccCcceecCCcccCCCCcCCCCC---------CCcceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeee
Q 004117 2 KKKITSPFCFPGELNMQRRLSEPSQ---------LDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNL 72 (773)
Q Consensus 2 rkKi~~~i~FP~~LDm~~~~~~~~~---------~~~~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~ 72 (773)
..|+++.|.||.+|||++|+..... ....|+|+|||+|.|+ +++|||+||||. .+++||+|||+.|+++
T Consensus 378 ~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~vr~-~~~~W~~fnD~~V~~v 455 (476)
T 3mhs_A 378 NRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKI-SGGQWFKFNDSMVSSI 455 (476)
T ss_dssp EEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEEC-SSSEEEEEEEEC-TTSCEEEEETTEEEEE
T ss_pred eEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCCC-CCCCceEEEEEC-CCCcEEEEeCCceEEC
Confidence 4799999999999999999876432 3578999999999997 899999999997 4789999999999999
Q ss_pred C
Q 004117 73 G 73 (773)
Q Consensus 73 ~ 73 (773)
+
T Consensus 456 ~ 456 (476)
T 3mhs_A 456 S 456 (476)
T ss_dssp C
T ss_pred C
Confidence 8
No 10
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.57 E-value=3.4e-15 Score=131.10 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=59.1
Q ss_pred CCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 669 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 669 ~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
++++++|+|.+++||.+||++|++++||||++|||+|+|++| +|..||++|||.+|+||+|-
T Consensus 30 ~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~L-kD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 30 LGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVL-KDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp TSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTSBTGGGTCCTTCEEEEE
T ss_pred CCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEc-cCcCCHHHcCCCCCCEEEEE
Confidence 558899999999999999999999999999999999999999 68899999999999999985
No 11
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.53 E-value=7.5e-15 Score=177.58 Aligned_cols=42 Identities=36% Similarity=0.677 Sum_probs=39.7
Q ss_pred ceEEEEEEEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeC
Q 004117 30 IYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 73 (773)
Q Consensus 30 ~Y~L~aVliH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~ 73 (773)
.|+|+|||+|.|.++++|||+||||+ .++||+|||+.|+.+.
T Consensus 796 ~Y~L~avi~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~ 837 (854)
T 3ihp_A 796 KYQLFAFISHMGTSTMCGHYVCHIKK--EGRWVIYNDQKVCASE 837 (854)
T ss_dssp EEEEEEEEEEESSCSSCCEEEEEEEE--TTEEEEEETTEEEECS
T ss_pred eEEEEEEEEeecCCCCCcCeEEEEEe--CCEEEEEECCeeEEcc
Confidence 69999999999998999999999998 6899999999999974
No 12
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.53 E-value=7.9e-15 Score=134.35 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=67.6
Q ss_pred cCCCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCC-------CCEEEEEecc--ccc
Q 004117 667 RKTRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFP-------GDKLWVQDSE--IHE 737 (773)
Q Consensus 667 R~~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~-------~~~l~l~~~~--~~~ 737 (773)
|+.|.++.|+|++++||.+||.+|++++||||++|||+|+|++| +|++||++|||.. ++||||+.+. .+|
T Consensus 8 kr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~L-eD~kTL~dy~I~~~ta~~q~~atl~Lvlr~~~~fE 86 (118)
T 4ajy_B 8 RRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLL-DDGKTLGECGFTSQTARPQAPATVGLAFRADDTFE 86 (118)
T ss_dssp EEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBTTTTTCCGGGSBTTBCEEEEEEECCSSCCC
T ss_pred ecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeEC-CCcCCHHHcCCCcCcccCCCCCEEEEEEecCCCcc
Confidence 44556899999999999999999999999999999999999999 7899999999999 9999999743 556
Q ss_pred CCCccch
Q 004117 738 HRDIADE 744 (773)
Q Consensus 738 ~~~~~d~ 744 (773)
+-.|..+
T Consensus 87 ~l~i~p~ 93 (118)
T 4ajy_B 87 ALCIEPF 93 (118)
T ss_dssp CCCBCCC
T ss_pred ceEEecC
Confidence 5555544
No 13
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.53 E-value=8.4e-15 Score=134.67 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=67.8
Q ss_pred cCCCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCC-------CCCEEEEEecc--ccc
Q 004117 667 RKTRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIF-------PGDKLWVQDSE--IHE 737 (773)
Q Consensus 667 R~~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~-------~~~~l~l~~~~--~~~ 737 (773)
|+.|.++.|+|++++||.+||.+|++++||||++|||+|+||+| +|++||++|||. .++||||+.+. .+|
T Consensus 8 r~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~L-eD~~TLsdy~I~~~~a~~q~~stL~L~lr~~g~fe 86 (118)
T 2fnj_B 8 RRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLL-DDGKTLGECGFTSQTARPQAPATVGLAFRADDTFE 86 (118)
T ss_dssp EEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBHHHHTCCTTTSBTTBCEEEEEEEBSSSCBC
T ss_pred ecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeEC-CCCCCHHHcCcccccccCCCCCEEEEEecCCCcee
Confidence 33445799999999999999999999999999999999999999 788999999999 79999999864 566
Q ss_pred CCCccch
Q 004117 738 HRDIADE 744 (773)
Q Consensus 738 ~~~~~d~ 744 (773)
+-.|..+
T Consensus 87 ~l~i~~~ 93 (118)
T 2fnj_B 87 ALRIEPF 93 (118)
T ss_dssp CCCBCCC
T ss_pred eeEEecC
Confidence 6666665
No 14
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=3.6e-14 Score=126.92 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=57.9
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEe
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 732 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~ 732 (773)
+.+.|+|++++||.+||++|++++||||++|+|||+||+| +|+.||++|||.+|++|+++.
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL-~D~~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQL-QLGKTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEEC-CTTSBHHHHTCCSSEEEEEEC
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeEC-CCCCcHHHcCCCCCCEEEEEE
Confidence 7889999999999999999999999999999999999999 688999999999999997664
No 15
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=5.1e-14 Score=125.94 Aligned_cols=60 Identities=25% Similarity=0.283 Sum_probs=57.8
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
+++.|+|++++||.+||++|++++||||++|||+|+|++| +|+.||++|||.+|+||+|+
T Consensus 39 k~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L-~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 39 KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIF-KDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp SCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEEC-CSSCBHHHHTCCTTEEEEEE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEEC-CCCCCHHHcCCCCCCEEEEE
Confidence 6788999999999999999999999999999999999999 68899999999999999997
No 16
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=117.34 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=60.0
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++++||||++|+|+|+|++| +|+.||++|||.+|++|||+...
T Consensus 14 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L-~d~~tL~~~~i~~~~~l~l~~rl 77 (79)
T 3phx_B 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPL-EDQLPLGEYGLKPLSTVFMNLRL 77 (79)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEEC-CCCCcHHHCCCCCCCEEEEEEec
Confidence 36789999999999999999999999999999999999999 57899999999999999999753
No 17
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.44 E-value=1.3e-13 Score=124.29 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=59.3
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCC-CCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNI-FPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I-~~~~~l~l~~~~ 734 (773)
+.++|+|++++||.+||++|++++||||++|||+|+|+.| +|++||++||| ++|++|||.+-.
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll-~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLA-RDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEE-CTTCBTGGGTCCSTTCEEEEEECC
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEc-cCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999999999999999999999999999999999977 68899999999 699999999755
No 18
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=99.44 E-value=3.7e-12 Score=130.28 Aligned_cols=188 Identities=15% Similarity=0.271 Sum_probs=125.9
Q ss_pred HHHHHHHHHhcCCCCCCCCCCeEEEechHHHHHHHHhcCCCCCC-----CCCCCCccccccccceeeccccccccCCCcc
Q 004117 445 KERQNHEKLALGKSIPLSLDCKYYLLPSTWLTKWRNYISPSGKN-----ASSIEPEILDGVIDSLKCEKHLRLLERPPDL 519 (773)
Q Consensus 445 ~~r~~l~~l~~~k~~~~~~~~~~y~Vp~~wl~~Wr~fv~~~~~~-----~~~~~P~~id~~~~~llC~~H~~Ll~~p~~~ 519 (773)
+||+.+..|.. .++.+|..+|+||+.|+++|++||+..... .+..+|++||| +.|+| .|+.....|..
T Consensus 8 ~Q~~~i~~l~~---~~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGpIdN--s~L~~-~~~~~~Lk~~l- 80 (217)
T 4a3p_A 8 TQRSDIATLLK---TSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDN--SGLLK-DGDAQSLKEHL- 80 (217)
T ss_dssp HHHHHHHHHTT---CCCCTTCEEEEEEHHHHHHHHHHHTCSTTCCTTTTCGGGCCCSBCC--GGGBC-CC---CBCSSC-
T ss_pred HHHHHHHHHHh---cCCCCCCEEEEEchHHHHHHHHHhcccccccccccccCCCCCcEeh--HHhhC-CCCCcccCcCc-
Confidence 56667776654 357789999999999999999999643211 11458999997 77887 55433323321
Q ss_pred ccccCcccccCCCCCCeeeeCHHHHHHHHHHhc---CCccccEEEEEeecCCCCCcccCcccccccCCCCCCCCCCcccc
Q 004117 520 VCKRGSIYQKGSATDGLTIVTENDWKWFCEEWG---GIKEKGLSVIVDFSNNAGNELVGSCKEILLSEEPCGPRDEENNE 596 (773)
Q Consensus 520 ~~~~g~~~q~~~~~~~~~~I~e~eW~~l~~~y~---~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 596 (773)
....++++|+++-|++|.+.|| |+++|. |..|..+ .
T Consensus 81 -----------~e~~Dy~~vp~~vW~~l~~wYG~~~ggp~I~-R~vi~~~---------~-------------------- 119 (217)
T 4a3p_A 81 -----------IDELDYILLPTEGWNKLVSWYTLMEGQEPIA-RKVVEQG---------M-------------------- 119 (217)
T ss_dssp -----------CBTTTEEEEEHHHHHHHHHHHCBCTTCCCCE-EEEEEET---------T--------------------
T ss_pred -----------ccCCCEEEECHHHHHHHHHHhCCCCCCCCcc-eeEEecC---------C--------------------
Confidence 1123599999999999999999 777764 4323210 0
Q ss_pred cccCCcccccCccchHHHHHhHHHHHHHhhhcccCcceEEEEecCCCCcccccccccCCCCccccccccccCCCceEEEE
Q 004117 597 IESQRPVVRTFPEICEDCIGERESCELMQKLNYCDKDISVFLVRGKEAPRSILEASESMFEPDRRASKRSRKTRSFVNLK 676 (773)
Q Consensus 597 ~~~~~~~~~~~p~vC~~C~~~~~~~~~~~~~~y~~~~I~V~~v~~~e~~~~~~~as~~~~~~~~R~S~R~R~~~~~~~l~ 676 (773)
+ |. . ..| -+.+++... +.....+++.
T Consensus 120 ---------~-------~~--------v--Evy---P~~l~l~~~-------------------------~~~~~~~~~~ 145 (217)
T 4a3p_A 120 ---------F-------CK--------V--EVY---LTELKLCEN-------------------------GNMNNVVTRR 145 (217)
T ss_dssp ---------E-------EE--------E--CCS---CEEEEEEET-------------------------TEEEEEEEEE
T ss_pred ---------e-------eE--------E--EEe---ccEEEEEec-------------------------CCCCcceEEE
Confidence 0 00 0 011 112222110 1111345778
Q ss_pred ecCcccHHHHHHHHHHHhCCCCC-CcEEEe---CC--eeeccccchhhhcCCCCCCEEEEEecc
Q 004117 677 VSASTSIYQLKMMIWESLGVVKE-NQILHK---GQ--RIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 677 vs~~~tv~~lK~~I~e~~gi~p~-~Q~L~~---~G--~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+|..+||.+|+..+-..++|+++ +=||.. .+ ..|.+.+.||.+++|..|..|.|-...
T Consensus 146 ~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 146 FSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp ECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred EcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 99999999999999999999997 578862 22 566666789999999999999988654
No 19
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.43 E-value=1.9e-13 Score=119.06 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=59.2
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCee-eccccchhhhcCCCCCCEEEEEec
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRI-IDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~-L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
++++.|+|++++||.+||.+|++++||||++|||+|+|++ | +|++||++|||.+|++|+|+.+
T Consensus 20 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL-~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 20 GSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVIL-REDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-CSSSBHHHHTCCTTSCEEEEEC
T ss_pred CcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEec-CCcCCHHHcCCCCCCEEEEEEc
Confidence 3678999999999999999999999999999999999999 8 6889999999999999999853
No 20
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.40 E-value=3.4e-13 Score=120.51 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=57.5
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCe------eeccccchhhhcCCCCCCEEEEEec
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQR------IIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~------~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
..+.++|++++||.+||.+|++++||||++|||+|.|+ +|.+|++||++|||.+|++|||++.
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL 95 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence 45789999999999999999999999999999999884 3558999999999999999999954
No 21
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.40 E-value=4.1e-13 Score=119.59 Aligned_cols=62 Identities=19% Similarity=0.115 Sum_probs=57.3
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeC--Ce---eeccccchhhhcCCCCCCEEEEEe
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKG--QR---IIDQECATLADLNIFPGDKLWVQD 732 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~--G~---~L~~d~~TL~~~~I~~~~~l~l~~ 732 (773)
..++++|++++||.+||.+|++++||||++|||+|. |+ +|.+|++||++|||.+|++|||++
T Consensus 28 ~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 28 VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 367899999999999999999999999999999997 55 676899999999999999999995
No 22
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.38 E-value=6.9e-13 Score=116.36 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=60.2
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++++||||++|+|+|+|+.| +|+.||++|||.+|++|+|+...
T Consensus 10 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~~~i~~g~~l~l~~rl 73 (88)
T 4fbj_B 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQM-NDEKTAADYKILGGSVLHLVLAL 73 (88)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEEC-CTTSBTTTTTCCTTCEEEEECBC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeEC-CCCCcHHHcCCCCCCEEEEEEEC
Confidence 36789999999999999999999999999999999999999 57899999999999999999755
No 23
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=4.9e-13 Score=120.93 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=63.7
Q ss_pred CCceEEEEecCcccHHHHHHHHHHHhCCCC---------------CCcEEEeCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 669 TRSFVNLKVSASTSIYQLKMMIWESLGVVK---------------ENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 669 ~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p---------------~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
.++++.|+|.+++||.+||++|++++|||| .+|+|+|+|++|.+|++||++|||.+|++|||+..
T Consensus 16 ~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g~~l~lv~~ 95 (105)
T 1v2y_A 16 DGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKK 95 (105)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSSEEEEEEEC
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCCCEEEEEeh
Confidence 457899999999999999999999999999 46799999999977889999999999999999977
Q ss_pred ccccCCC
Q 004117 734 EIHEHRD 740 (773)
Q Consensus 734 ~~~~~~~ 740 (773)
.---++|
T Consensus 96 lr~~~~~ 102 (105)
T 1v2y_A 96 LGQKSGP 102 (105)
T ss_dssp SCSCCCC
T ss_pred hccCCCC
Confidence 6444444
No 24
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.37 E-value=4.1e-13 Score=117.37 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=57.3
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEe-------CCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHK-------GQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~-------~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+...+.+++++||.+||++|++++||||++|||+| .|++| +|++||++|||.+|++|||++..
T Consensus 15 ~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l-~d~~tL~~Y~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 15 RVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNM-ANDKQLGYYQCRDEFVIHVVDLQ 84 (86)
T ss_dssp CEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSC-CTTSBGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEc-CCCCCHHHCCCCCCCEEEEEeCC
Confidence 44578899999999999999999999999999995 58888 78899999999999999999654
No 25
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=99.37 E-value=1.6e-11 Score=126.67 Aligned_cols=191 Identities=14% Similarity=0.245 Sum_probs=124.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCeEEEechHHHHHHHHhcCCCCC-----CCCCCCCccccccccceeeccccccccCCCcc
Q 004117 445 KERQNHEKLALGKSIPLSLDCKYYLLPSTWLTKWRNYISPSGK-----NASSIEPEILDGVIDSLKCEKHLRLLERPPDL 519 (773)
Q Consensus 445 ~~r~~l~~l~~~k~~~~~~~~~~y~Vp~~wl~~Wr~fv~~~~~-----~~~~~~P~~id~~~~~llC~~H~~Ll~~p~~~ 519 (773)
+||+.+..|.. .++.+|..+|+||+.|+++|++||+.... ..+..+|+|||| +.|++ .+.+....|..
T Consensus 17 ~Qr~~i~~l~~---~~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGPIDN--s~L~~-~~~~~~Lk~~l- 89 (231)
T 3jyu_A 17 TQKTELGALMG---TTLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDN--SGLFS-DPESQTLKEHL- 89 (231)
T ss_dssp HHHHHHHTTTT---CCCCTTCEEEEEEHHHHHHHHHHHTSSSCCTTTTTCGGGCCCSBCC--GGGEE-ETTTTEECSSC-
T ss_pred HHHHHHHHHHh---cCCCCCCEEEEEchHHHHHHHHHhcccccccccccccCCCCCcEeh--HHHhC-cCCCccccccc-
Confidence 45666666554 25678999999999999999999964321 111468999997 66777 44322222221
Q ss_pred ccccCcccccCCCCCCeeeeCHHHHHHHHHHhc---CCccccEEEEEeecCCCCCcccCcccccccCCCCCCCCCCcccc
Q 004117 520 VCKRGSIYQKGSATDGLTIVTENDWKWFCEEWG---GIKEKGLSVIVDFSNNAGNELVGSCKEILLSEEPCGPRDEENNE 596 (773)
Q Consensus 520 ~~~~g~~~q~~~~~~~~~~I~e~eW~~l~~~y~---~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 596 (773)
....++++|+++-|++|.+.|| |+++|. |..|..+ .
T Consensus 90 -----------~e~~Dy~~vp~~vW~~l~~wYG~~~gg~~I~-R~vi~~~---------~-------------------- 128 (231)
T 3jyu_A 90 -----------IDELDYVLVPAEAWNKLLNWYGCVEGQQPIV-RKVVEHG---------L-------------------- 128 (231)
T ss_dssp -----------CBTTTEEEEEHHHHHHHHHHHCBCTTCCCCE-EEEEEEC---------S--------------------
T ss_pred -----------ccCCCEEEECHHHHHHHHHHhCCCCCCCceE-EEEeccC---------C--------------------
Confidence 1123599999999999999999 667643 3222210 0
Q ss_pred cccCCcccccCccchHHHHHhHHHHHHHhhhcccCcceEEEEecCCCCcccccccccCCCCccccccccccCCCceEEEE
Q 004117 597 IESQRPVVRTFPEICEDCIGERESCELMQKLNYCDKDISVFLVRGKEAPRSILEASESMFEPDRRASKRSRKTRSFVNLK 676 (773)
Q Consensus 597 ~~~~~~~~~~~p~vC~~C~~~~~~~~~~~~~~y~~~~I~V~~v~~~e~~~~~~~as~~~~~~~~R~S~R~R~~~~~~~l~ 676 (773)
..+...+.- | -+.+++.. ++..+..+++.
T Consensus 129 -~~~~~~vEv----------------------y---P~~l~l~~-------------------------~~~~~~~~~~~ 157 (231)
T 3jyu_A 129 -FVKHCKVEV----------------------Y---LLELKLCE-------------------------NSDPTNVLSCH 157 (231)
T ss_dssp -SSCEEEECC----------------------S---CEEEEEEE-------------------------TTEEEEEEEEE
T ss_pred -CCCcceEEE----------------------e---cceEEEEe-------------------------cCCCCceEEEE
Confidence 000000000 0 11112211 11112346778
Q ss_pred ecCcccHHHHHHHHHHHhCCCCC-CcEEEe-C----CeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 677 VSASTSIYQLKMMIWESLGVVKE-NQILHK-G----QRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 677 vs~~~tv~~lK~~I~e~~gi~p~-~Q~L~~-~----G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+|..+||.+|+..+-..++|+++ +=||.. . ...|.+.+.||.+++|..|.+|.|-...
T Consensus 158 ~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 158 FSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp ECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred ecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 89999999999999999999998 579974 2 3567666799999999999999998654
No 26
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=1.1e-12 Score=111.83 Aligned_cols=62 Identities=19% Similarity=0.125 Sum_probs=58.0
Q ss_pred ce-EEEE-ecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 671 SF-VNLK-VSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 671 ~~-~~l~-vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
++ ..|+ |++++||.+||.+|++++||||++|+|+|+|++| +|++||++|||.+|++|||+..
T Consensus 13 ~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L-~d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 13 RQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQM-EDGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp SCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTCBTTTTTCCTTCEEEEEEC
T ss_pred CEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEEC-CCCCCHHHcCCCCCCEEEEEEe
Confidence 45 4899 9999999999999999999999999999999999 5789999999999999999865
No 27
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.36 E-value=9.3e-13 Score=115.16 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=57.4
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEe
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 732 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~ 732 (773)
++++.|+|++++||.+||.+|++++||||++|+|+|+|+.| +|+.||++||| +|++|||+.
T Consensus 27 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L-~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 27 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVL-QDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTSBGGGGTC-TTEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEC-CCCCcHHHcCC-CCcEEEEEE
Confidence 36778999999999999999999999999999999999999 57899999999 899999985
No 28
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.36 E-value=7.6e-13 Score=113.28 Aligned_cols=63 Identities=21% Similarity=0.168 Sum_probs=59.5
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.++|++++||.+||.+|++++||||++|||+|+|++| +|+.||++|||.+|++|+|+...
T Consensus 14 ~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L-~d~~tl~~~~i~~~~~i~l~~~~ 76 (79)
T 2uyz_B 14 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKELGMEEEDVIEVYQEQ 76 (79)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCHHHHTCCTTEEEEEEECC
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEe-CCCCCHHHcCCCCCCEEEEEEec
Confidence 6789999999999999999999999999999999999999 57799999999999999999654
No 29
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.36 E-value=1.3e-12 Score=115.20 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=59.4
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
++++.|+|++++||.+||.+|++++||||++|+|+|+|+.| +|+.||++|||.+|++|+|+..
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L-~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 27 GTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEEC-CTTCBTGGGTCCTTCEEEEECC
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeEC-CCcCcHHHCCCCCCCEEEEEEe
Confidence 36789999999999999999999999999999999999999 5779999999999999999965
No 30
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.36 E-value=4.4e-13 Score=117.40 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=56.4
Q ss_pred ceEEEE--ecCcccHHHHHHHH-HHHhCCCCCCcEEEeCCeeeccccchhhhcCC-CCCCEEEEEecc
Q 004117 671 SFVNLK--VSASTSIYQLKMMI-WESLGVVKENQILHKGQRIIDQECATLADLNI-FPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~--vs~~~tv~~lK~~I-~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I-~~~~~l~l~~~~ 734 (773)
++++|+ |++++||.+||++| ++++||||++|||+|+||+| +|+.||++||| .+|++|+|..+-
T Consensus 12 ~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L-~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 12 PKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVL-HDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp SCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEEC-CTTCBHHHHCCCGGGCEEEEEECC
T ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEEC-cCcCCHHHcCCCCCCCEEEEEcCC
Confidence 445555 55999999999999 99999999999999999999 68899999999 799999999765
No 31
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.35 E-value=1e-12 Score=115.14 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=59.4
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.++|++++||.+||.+|++++||||++|+|+|+|++| +|++||++|||.+|++|+|+.+.
T Consensus 14 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L-~D~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPL-EDQLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp SCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCC-CTTSBHHHHHCSTTCEEEEEEC-
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEEc
Confidence 36778999999999999999999999999999999999999 57899999999999999999654
No 32
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.35 E-value=1.5e-12 Score=115.78 Aligned_cols=63 Identities=13% Similarity=0.008 Sum_probs=59.0
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeecccc-chhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQEC-ATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~-~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.|+|++++||.+||.+|++++||||++|+|+|+|++|. |+ +||++|||.+|++|+|+...
T Consensus 25 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 25 KQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELA-DDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEEC-CTTSBHHHHTCCTTEEEEEEECC
T ss_pred cEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECC-CCcccHHHCCCCCCCEEEEEEeC
Confidence 37889999999999999999999999999999999999995 66 99999999999999999765
No 33
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.35 E-value=1.3e-12 Score=114.78 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=59.1
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++++||||++|||+|+|++| +|+.||++||| +|++|||+...
T Consensus 15 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L-~d~~tL~~~~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 15 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVL-QDDKKLQEYNV-GGKVIHLVERA 77 (90)
T ss_dssp CCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTSBGGGGTC-TTEEEEEEECC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeEC-CCCCCHHHcCC-CCcEEEEEecC
Confidence 36788999999999999999999999999999999999999 57899999999 89999999765
No 34
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.34 E-value=1.7e-12 Score=110.15 Aligned_cols=62 Identities=21% Similarity=0.279 Sum_probs=58.3
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
+.+.++|++++||.+||.+|++.+||||++|+|+|+|+.| +|++||++|||.+|++|||+.+
T Consensus 14 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L-~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 14 DKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKIL-KDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEc-CCCCCHHHcCCCCCCEEEEEEc
Confidence 5678999999999999999999999999999999999999 5779999999999999999854
No 35
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.34 E-value=1.1e-12 Score=117.28 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=57.3
Q ss_pred eEEEEecCcccHHHHHHHH-HHHhCCCCCCcEEEeCCeeeccccchhhhcCC-CCCCEEEEEecc
Q 004117 672 FVNLKVSASTSIYQLKMMI-WESLGVVKENQILHKGQRIIDQECATLADLNI-FPGDKLWVQDSE 734 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I-~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I-~~~~~l~l~~~~ 734 (773)
++.|+|++++||.+||.+| ++..||||++|||+|+|++| +|+.||++||| .+|++|+|+++.
T Consensus 33 ~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L-~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 33 SIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVL-HDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEE-CTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEEC-cCcCCHHHcCcCCCCCEEEEEEeC
Confidence 4566788999999999999 88899999999999999999 58899999999 999999999765
No 36
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.34 E-value=1.4e-12 Score=116.46 Aligned_cols=64 Identities=20% Similarity=0.164 Sum_probs=60.0
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++++||||++|||+|+|++| +|+.||++|||..|++|||+...
T Consensus 31 g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L-~d~~tl~dy~i~~g~~I~l~~~~ 94 (97)
T 1wyw_B 31 SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKELGMEEEDVIEVYQEQ 94 (97)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCHHHHTCCTTCEEEEEESS
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEc-CCCCCHHHCCCCCCCEEEEEEec
Confidence 36789999999999999999999999999999999999999 57899999999999999999754
No 37
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.34 E-value=1.7e-12 Score=113.24 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=59.9
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++++||||++|+|+|+|++| +|+.||++|||.+|++|||+...
T Consensus 22 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L-~d~~tL~~~~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 22 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQM-NDEKTAADYKILGGSVLHLVLRL 85 (88)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEEC-CTTSBGGGGTCCTTCEEEECCCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeEC-CCCCcHHHcCCCCCCEEEEEEeC
Confidence 36789999999999999999999999999999999999999 57899999999999999998654
No 38
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.34 E-value=1.6e-12 Score=115.18 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=60.0
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++++||||++|+|+|+|++| +|++||++|||.+|++|+|+...
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPL-EDEATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEEC-CTTSBHHHHTCCSSCEEEEECCC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEEC-CCCCcHHHCCCCCCCEEEEEEec
Confidence 46789999999999999999999999999999999999999 58899999999999999999654
No 39
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.33 E-value=2.7e-12 Score=108.34 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=59.6
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.++|++++||.+||.+|++++||||++|+|+|+|+.| +|+.||++|||.+|++|+|+...
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L-~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQM-NDEKTAADYKILGGSVLHLVLAL 73 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEeC
Confidence 35788999999999999999999999999999999999999 57899999999999999999654
No 40
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.33 E-value=2.9e-12 Score=111.07 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=58.9
Q ss_pred CceEEEEecCcccHHHHHHHHHHH---hCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWES---LGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~---~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+.++|++++||.+||.+|+++ .||||++|+|+|+|+.| +|+.||++|||.+|++|||+.+-
T Consensus 15 g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L-~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 15 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKIL-SDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEEC-CTTSBGGGGCCCTTSEEEEEEC-
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEEC-cCCCCHHHcCCCCCCEEEEEEcC
Confidence 367789999999999999999998 89999999999999999 57899999999999999999654
No 41
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.32 E-value=2.3e-12 Score=112.40 Aligned_cols=63 Identities=24% Similarity=0.255 Sum_probs=59.2
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
++.+.|+|++++||.+||.+|++.+||||++|+|+|+|+.| +|++||++|||.+|++|+|+.+
T Consensus 21 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L-~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 21 GKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVL-VETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEEC-CTTCBTTTTTCCTTEEEEEECC
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeEC-CCcCCHHHCCCCCCCEEEEEEe
Confidence 46788999999999999999999999999999999999999 6789999999999999999854
No 42
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.8e-12 Score=117.84 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=60.5
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+.|+|++++||.+||.+|++++||||++|||+|+|++| +|+.||++|||.+|++|+|+++.
T Consensus 11 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 11 KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVL-QDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp CCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEEC-CTTSBTTTTTCCTTCEEEEECCC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEEC-CCcCCHHHcCCCCCCEEEEEEcC
Confidence 46789999999999999999999999999999999999999 57899999999999999999876
No 43
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=3.1e-12 Score=110.66 Aligned_cols=63 Identities=24% Similarity=0.270 Sum_probs=59.4
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.|+|++++||.+||.+|++++||||++|+|+|+|+.| +|+.||++|||.+|++|+|+...
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L-~d~~tL~~~~i~~~~~i~l~~rl 76 (85)
T 3n3k_B 14 RTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIHNHSALYLLLKL 76 (85)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEEC-CTTCBTTTTTCCTTCEEEEEECC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeEC-CCCCCHHHCCCCCCCEEEEEEec
Confidence 5789999999999999999999999999999999999999 57889999999999999999654
No 44
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=4.5e-12 Score=110.97 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=59.0
Q ss_pred ceEEE-EecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNL-KVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l-~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.| +|++++||.+||.+|++++||||++|+|+|+|+.| +|++||++|||.+|++|||+...
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L-~d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQL-ENGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEEC-CSSSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeEC-CCCCCHHHCCCCCCCEEEEEEeC
Confidence 57899 59999999999999999999999999999999999 57899999999999999999654
No 45
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.31 E-value=2.4e-12 Score=116.12 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=59.6
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+.+.|+|++++||.+||.+|++++||||++|+|+|+|++|.||.+||++|||.+|++|+|+...
T Consensus 22 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 22 VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 5778999999999999999999999999999999999999666689999999999999999654
No 46
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=3.4e-12 Score=111.21 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=59.3
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.++|++++||.+||.+|++++||||++|+|+|+|+.| +|++||++|||.+|++|||+...
T Consensus 18 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L-~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 18 GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVL-QDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp EEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEEC-CSSSBHHHHTCCTTEEEEEEECS
T ss_pred CEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEc-cCCCCHHHCCCCCCCEEEEEEec
Confidence 5778999999999999999999999999999999999999 57899999999999999999654
No 47
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=3.5e-12 Score=111.81 Aligned_cols=64 Identities=22% Similarity=0.222 Sum_probs=58.8
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.++|++++||.+||.+|++++||||++|+|+|+|+.| +|++||++|||.+|++|+|+...
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L-~D~~tL~~~gi~~g~~i~l~~r~ 82 (88)
T 1sif_A 19 GKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 82 (88)
T ss_dssp SCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEEC-CTTSBSGGGTCCTTCEEEEEC--
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEeC
Confidence 36789999999999999999999999999999999999999 57899999999999999999654
No 48
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=3.5e-12 Score=109.32 Aligned_cols=62 Identities=24% Similarity=0.239 Sum_probs=58.5
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
+.+.++|++++||.+||.+|++.+||||.+|+|+|+|+.| +|++||++|||.+|++|+|+..
T Consensus 18 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L-~d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 18 RECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKAL-ADGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp CEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEC-CTTSBGGGGTCCSSBCCEEECC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeEC-CCCCcHHHcCCCCCCEEEEEEe
Confidence 5678999999999999999999999999999999999999 5789999999999999999854
No 49
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=4.9e-12 Score=112.50 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=59.6
Q ss_pred CceEEEEecCcccHHHHHHHHHHH---hCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWES---LGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~---~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+.++|++++||.+||.+|++. +||||++|+|+|+|+.| +|+.||++|||.+|++|+|++..
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L-~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 10 QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKIL-NDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEEC-CTTSBGGGGTCCSSSEEEEEESS
T ss_pred CCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEEC-CCcCcHHHCCCCCCCEEEEEEeC
Confidence 367899999999999999999999 79999999999999999 57799999999999999999765
No 50
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.29 E-value=2.3e-12 Score=115.60 Aligned_cols=59 Identities=12% Similarity=0.029 Sum_probs=54.4
Q ss_pred eEEEEecCcccHHHHHHHHHHH-hCCCC-CCcEEEeCCeeeccccchhhhc--CCCCCCEEEEE
Q 004117 672 FVNLKVSASTSIYQLKMMIWES-LGVVK-ENQILHKGQRIIDQECATLADL--NIFPGDKLWVQ 731 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~-~gi~p-~~Q~L~~~G~~L~~d~~TL~~~--~I~~~~~l~l~ 731 (773)
++.|+|++++||.+||++|+++ .|+|| ++|||+|+||+| +|+.||++| ||.+|+||||+
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L-~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLL-PDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEE-CTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEEC-CCCCCHHHHhcCCCCCCEEEeC
Confidence 6789999999999999999997 57775 999999999999 588999999 99999999985
No 51
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.29 E-value=3.7e-12 Score=113.97 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=60.0
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+.|+|++++||.+||.+|++++||||++|+|+|+|+.| +|+.||++|||.+|++|+|+...
T Consensus 32 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 32 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEEC-CTTCBSGGGTCCTTEEEEEECBC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEEC-CCCCcHHHCCCCCCCEEEEEEec
Confidence 36789999999999999999999999999999999999999 68899999999999999999654
No 52
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=4.8e-12 Score=114.89 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=60.3
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++++|||+.+|||+|+|++| +|++||++|||.+|++|||+...
T Consensus 33 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 33 GKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPL-TDKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp TEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEEC-CTTSHHHHCCCSSSCEEEEECCC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEeC
Confidence 36788999999999999999999999999999999999999 58899999999999999999765
No 53
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.29 E-value=6.5e-12 Score=105.97 Aligned_cols=63 Identities=24% Similarity=0.255 Sum_probs=59.1
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+.+.++|++++||.+||.+|++.+||||++|+|+|+|+.| +|++||++|||.+|++|+|+...
T Consensus 11 ~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L-~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQRESTLHLVLRL 73 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTCBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeEC-CCCCcHHHcCCCCCCEEEEEEeC
Confidence 5678999999999999999999999999999999999999 57899999999999999999654
No 54
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.7e-12 Score=116.92 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=58.9
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
++++.|+|++++||.+||.+|++++||||++|||+|+|+.| +|+.||++|||.+|++|+|+.+
T Consensus 37 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 37 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKIL-KDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp SCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEEC-CTTSBTTTTTCCTTEEEEECCC
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEEC-CCcCcHHHCCCCCCCEEEEEeC
Confidence 45678899999999999999999999999999999999999 5789999999999999999964
No 55
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=6.6e-12 Score=108.51 Aligned_cols=63 Identities=24% Similarity=0.262 Sum_probs=59.3
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.|+|++++||.+||.+|++++||||++|+|+|+|+.| +|+.||++|||.+|++|+|+...
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L-~d~~tL~~~~i~~~~~l~l~~r~ 76 (85)
T 3mtn_B 14 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKWSTLFLLLRL 76 (85)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEEC-CTTSBTGGGTCCTTCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEEC-CCCCCHHHcCCCCCCEEEEEEEC
Confidence 6789999999999999999999999999999999999999 57799999999999999999654
No 56
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.27 E-value=6.6e-12 Score=111.46 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=59.7
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.|+|++++||.+||.+|++++||||++|+|+|+|+.| +|+.||++|||.+|++|+|+...
T Consensus 12 ~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L-~d~~tL~~~~i~~~~~i~l~~r~ 74 (96)
T 3k9o_B 12 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 74 (96)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEEc
Confidence 6789999999999999999999999999999999999999 57789999999999999999765
No 57
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=5e-12 Score=111.90 Aligned_cols=62 Identities=18% Similarity=0.073 Sum_probs=58.0
Q ss_pred eEEEEecCcccHHHHHHHHHHHh--CCCCCCcEEEeCCeeeccccchhhhc--CCCCCCEEEEEecc
Q 004117 672 FVNLKVSASTSIYQLKMMIWESL--GVVKENQILHKGQRIIDQECATLADL--NIFPGDKLWVQDSE 734 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~--gi~p~~Q~L~~~G~~L~~d~~TL~~~--~I~~~~~l~l~~~~ 734 (773)
.+.|+|.+++||.+||.+|++++ ||||++|||+|+|+.| +|+.||++| +|.+|++|||+...
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L-~D~~tL~~~~~~i~~~~~i~lv~~~ 86 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLL-LDHQCLRDLLPKQEKRHVLHLVCNV 86 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEEC-CSSSCHHHHSCSSSCSEEEEEECCC
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEEC-cCcCCHHHHhcCCCCCCEEEEEeCC
Confidence 67888889999999999999999 9999999999999999 577899999 99999999999654
No 58
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.27 E-value=7.4e-12 Score=112.71 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=59.3
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+.+.|+|++++||.+||.+|++.+||||++|+|+|+|+.| +|++||++|||.+|++|+|+...
T Consensus 35 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~~gI~~g~~I~l~~~~ 97 (101)
T 2klc_A 35 EKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKIL-KDQDTLSQHGIHDGLTVHLVIKT 97 (101)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEE-CTTCCTGGGTCCTTCEEEEEECC
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEEC-CCcCcHHHcCCCCCCEEEEEEcC
Confidence 5688999999999999999999999999999999999999 57899999999999999999654
No 59
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.27 E-value=7.1e-12 Score=115.47 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=61.3
Q ss_pred CCCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 668 KTRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 668 ~~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
..++++.|+|++++||.+||.+|++.+||||++|+|+|+|+.| +|+.||++|||.+|++|||+...
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L-~D~~tL~~y~i~~g~~i~lv~rl 108 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFI-KDSNSLAYYNMASGAVIHLALKE 108 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEE-CTTSBHHHHTCCSSCEEEEEECC
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEEC-CCCCCHHHCCCCCCCEEEEEEEc
Confidence 3457789999999999999999999999999999999999999 57899999999999999999755
No 60
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=8.5e-12 Score=112.13 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=58.3
Q ss_pred eEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 672 FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.+.|+|++++||.+||.+|++++||||++|+|+|+|+.| +|++||++|||.+|++|+|+...
T Consensus 33 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 33 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKIL-KDPDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTSBHHHHTCCTTCEEEEEECC
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEEC-CCcCcHHHCCCCCCCEEEEEEcC
Confidence 368999999999999999999999999999999999999 57899999999999999999765
No 61
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.26 E-value=4.5e-12 Score=117.86 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=57.0
Q ss_pred ceE-EEEecCcccHHHHHHHH-----HHHhCCCC--CCcEEEeCCeeeccccchhhhcCCCCC------CEEEEEecc
Q 004117 671 SFV-NLKVSASTSIYQLKMMI-----WESLGVVK--ENQILHKGQRIIDQECATLADLNIFPG------DKLWVQDSE 734 (773)
Q Consensus 671 ~~~-~l~vs~~~tv~~lK~~I-----~e~~gi~p--~~Q~L~~~G~~L~~d~~TL~~~~I~~~------~~l~l~~~~ 734 (773)
+.+ .++|++++||.+||++| ++++|||| ++|||||+||+| +|+.||++|+|..| +||||+.+.
T Consensus 27 ~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~L-eD~~TLsdy~I~~~~~~~~v~tmhlVlrl 103 (126)
T 1se9_A 27 SDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVL-ENSKTVKDYRSPVSNLAGAVTTMHVIIQA 103 (126)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEEC-CTTSBGGGGSCCTTSCTTCCEEEEEEECC
T ss_pred CEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeEC-cCCCcHHHcCCCcCCccCCcEEEEEEecc
Confidence 456 69999999999999999 66789997 899999999999 68899999999999 689999776
No 62
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.26 E-value=4.3e-12 Score=112.90 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=60.0
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+.|+|++++||.+||.+|++++||||++|+|+|+|+.| +|++||++|||.+|++|||+...
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L-~D~~tL~~~gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKIL-RDQDILSQRGILDGSTVHVVVRS 89 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEEC-CTTSCHHHHTCCTTEEEECCBCC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEC-CCcCCHHHCCCCCCCEEEEEEeC
Confidence 46789999999999999999999999999999999999999 57899999999999999999654
No 63
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.25 E-value=5.1e-12 Score=112.43 Aligned_cols=64 Identities=22% Similarity=0.129 Sum_probs=57.7
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCC---e---eeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ---R---IIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G---~---~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
..+.++|++++||.+||.+|++++||||++|||+|.| + +|.+|++||++|||.+|++|||++..
T Consensus 19 ~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~~ 88 (95)
T 1v6e_A 19 FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHS 88 (95)
T ss_dssp SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCS
T ss_pred eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEECC
Confidence 3578999999999999999999999999999999986 4 35578999999999999999999644
No 64
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.25 E-value=7.4e-12 Score=115.20 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=57.9
Q ss_pred CceEEEEecCcccHHHHHHHHHH------HhCC--CCCCcEEEeCCeeeccccchhhhcCCCCC--CEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWE------SLGV--VKENQILHKGQRIIDQECATLADLNIFPG--DKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e------~~gi--~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~--~~l~l~~~~ 734 (773)
++++.|+|++++||.+||++|++ ++|| ||++|||||+||+| +|+.||++|+|..| +||||+...
T Consensus 26 G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~L-eD~~TL~~y~I~~~~~~tlhLvlr~ 99 (116)
T 1wgh_A 26 GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFL-HGNVTLGALKLPFGKTTVMHLVARE 99 (116)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEE-CSSCBTTTTTCCSSCEEEEEEEECS
T ss_pred CCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCC-CCCCcHHHcCCCCCCceEEEEEccC
Confidence 37889999999999999999999 7786 69999999999999 68899999999877 579999776
No 65
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.25 E-value=9.5e-12 Score=114.50 Aligned_cols=64 Identities=23% Similarity=0.245 Sum_probs=60.3
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++++||||++|+|+|+|++| +|++||++|||.+|++|+|+...
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~ygI~~gstI~l~~~~ 82 (114)
T 2kdi_A 19 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQL-EDGRTLSDYNIQRESTLHLVLRL 82 (114)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTCBTTTTTCCSSCEEEEEECC
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEEC-CCCCcHHHCCCCCCCEEEEEEEc
Confidence 36789999999999999999999999999999999999999 58899999999999999999765
No 66
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=6.3e-12 Score=112.76 Aligned_cols=64 Identities=13% Similarity=0.273 Sum_probs=58.5
Q ss_pred CCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEe--CCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 669 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHK--GQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 669 ~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~--~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.++++.|+|++++||.+||.+|++++||||++|+|++ +|+ | +|+.||.+|+|.+|++|||+...
T Consensus 17 ~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L-~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 17 RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-V-EDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-C-CTTSBHHHHCCCSEEEEEECCSS
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-C-CCcCCHHHcCCCCCCEEEEEecC
Confidence 4588999999999999999999999999999999986 677 8 68899999999999999998544
No 67
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.24 E-value=1.4e-11 Score=108.80 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=58.8
Q ss_pred ceEEEEecCc-----ccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSAS-----TSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~-----~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+.+.|+|+++ +||.+||.+|++++||||++|+|+|+|+.|.||++||++|||.+|++|||+.+.
T Consensus 17 ~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 17 EKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp SEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 5678899995 999999999999999999999999999999766889999999999999999654
No 68
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.24 E-value=1.1e-11 Score=113.38 Aligned_cols=64 Identities=22% Similarity=0.275 Sum_probs=59.5
Q ss_pred CceEEEEecC-cccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSA-STSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~-~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+.++|++ ++||.+||.+|++.+||||++|+|+|+|+.| +|+.||++|||.+|++|+|+...
T Consensus 40 g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L-~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 40 GQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFL-KDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp SCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBC-CTTSBTTTTTCSSSCEEEEECSS
T ss_pred CcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEC-CCCCcHHHCCCCCCCEEEEEEEc
Confidence 3567899998 9999999999999999999999999999999 57899999999999999999654
No 69
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.23 E-value=7.1e-12 Score=116.89 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=58.7
Q ss_pred CceEEEEecCcccHHHHHHHHHH------HhCCC--CCCcEEEeCCeeeccccchhhhcCCCCCC--EEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWE------SLGVV--KENQILHKGQRIIDQECATLADLNIFPGD--KLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e------~~gi~--p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~--~l~l~~~~ 734 (773)
+++++|+|++++||.+||++|++ ++||| |++|||||+||+| +|+.||++|||..|+ ||||+...
T Consensus 27 G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~L-eD~~TL~~y~I~~~~~~tlhlv~r~ 100 (125)
T 2gow_A 27 GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFL-HGNVTLGALKLPFGKTTVMHLVARE 100 (125)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEE-ESSCBTGGGCCCTTSEEEEEEEECS
T ss_pred CCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCC-CCCCcHHHcCCCCCCceEEEEEecC
Confidence 47889999999999999999999 88995 9999999999999 688999999999887 78999776
No 70
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.23 E-value=1.6e-11 Score=109.57 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=59.4
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.++|++++||.+||.+|++++||||.+|+|+|+|+.| +|++||++|||.+|++|+|+...
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L-~D~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEEC-CTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEEC-CCCCCHHHcCCCCCCEEEEEEeC
Confidence 5678999999999999999999999999999999999999 57899999999999999999765
No 71
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.23 E-value=9.3e-12 Score=109.64 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=59.5
Q ss_pred CceEEE-EecCcccHHHHHHHHHHHhCCCCCCcEEE---eCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNL-KVSASTSIYQLKMMIWESLGVVKENQILH---KGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l-~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~---~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.| +|++++||.+||.+|++++||||++|+|+ |+|++| +|+.||++|||.+|++|+|+.+.
T Consensus 16 g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L-~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 16 GQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPA-ENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp TEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEEC-CTTSBHHHHTCCTTEEEEEECCC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCc-CCCCCHHHcCCCCCCEEEEEecC
Confidence 367889 99999999999999999999999999999 999999 57899999999999999999544
No 72
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.23 E-value=1.6e-11 Score=114.86 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=59.5
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+.|+|++++||.+||.+|++++|||+++|+|+|+|+.| +|++||++|||.+|++|+|+...
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKIL-KDQDTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEE-STTSCGGGTTCSSSEEEEEEEC-
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEc-CCCCCHHHcCCCCCCEEEEEecc
Confidence 45789999999999999999999999999999999999999 57899999999999999999765
No 73
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.22 E-value=1.6e-11 Score=112.37 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=59.4
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.|+|++++||.+||.+|++++||||.+|||+|+|+.| +|+.||++|||.+|++|||+...
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 46 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBTTTTTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEEC-CCCCcHHHCCCCCCCEEEEEEec
Confidence 6789999999999999999999999999999999999999 57789999999999999999654
No 74
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.84 E-value=1.3e-12 Score=110.76 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=58.4
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
+++.++|++++||.+||.+|++.+||||++|+|+|+|+.| +|++||++|||.+|++|||+..
T Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L-~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 11 YGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKEL-PNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 5678999999999999999999999999999999999999 5789999999999999999864
No 75
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.20 E-value=8.9e-12 Score=111.16 Aligned_cols=63 Identities=10% Similarity=0.149 Sum_probs=58.1
Q ss_pred CceE-EEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFV-NLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~-~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+ .|+|++++||.+||.+|++++||||++|+|+|.|++|. |+ ||++|||.+|++|+|+.+.
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~-D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK-DD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECC-SS-CCCSCCCCSSCEEECCCCC
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCC-CC-CHHHCCCCCCCEEEEEecc
Confidence 3677 59999999999999999999999999999999999995 66 9999999999999999654
No 76
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.20 E-value=2.2e-11 Score=118.14 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=60.3
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.++|++++||.+||.+|++++||||++|+|+|+|++| +|+.||++|||.+|++|||+...
T Consensus 91 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L-~d~~tL~~y~i~~g~~l~l~~rl 154 (159)
T 3rt3_B 91 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPL-EDQLPLGEYGLKPLSTVFMNLRL 154 (159)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeec-CCCCCHHHcCCCCCCEEEEEEec
Confidence 47889999999999999999999999999999999999999 57899999999999999999654
No 77
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.20 E-value=2.2e-11 Score=110.41 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=58.4
Q ss_pred eEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 672 FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.+.|+|++++||.+||.+|++++||++++|+|+|+|+.| +|++||++|||.+|++|||+...
T Consensus 28 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 28 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKIL-KDPDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEEC-CTTSCHHHHTCCTTEEEEEEECC
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEEC-CCcCcHHHcCCCCCCEEEEEEcC
Confidence 368999999999999999999999999999999999999 57899999999999999999765
No 78
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.20 E-value=9.9e-12 Score=110.63 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=58.6
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++++||||++|+|+|.|++| +|. ||++|||.+|++|+|+.+.
T Consensus 26 g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~-tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 26 KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDK-TLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSS-BHHHHCCCTTEEEEECCSS
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcC-cHHHCCCCCCCEEEEEecc
Confidence 36788999999999999999999999999999999999999 565 9999999999999999654
No 79
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.20 E-value=2.8e-11 Score=119.05 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=60.5
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++++||||++|||+|+|++| +|+.||++|||.+|++|||+...
T Consensus 10 Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~~y~I~~gstI~Lvlrl 73 (169)
T 3l0w_B 10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 73 (169)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEEC-CTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccc-cCcCcHHHcCCCCCCEEEEEEEe
Confidence 36789999999999999999999999999999999999999 67899999999999999999765
No 80
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.7e-11 Score=110.39 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=59.6
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
..+.++++++.||.+||++|.++++||+++|+|+|+||.| .|+.||.+|||.+|.||||+...
T Consensus 27 ~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiL-KD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 27 QEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKIL-KNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp CEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEE-CSSCCHHHHSCCSSCEEEEEEEE
T ss_pred cEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEc-CCcchHHHcCCCCCCEEEEEEec
Confidence 5679999999999999999999999999999999999999 57789999999999999999866
No 81
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.17 E-value=5.6e-11 Score=108.73 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=59.2
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+.+.++|++++||.+||.+|++++||||.+|+|+|+|+.| +|++||++|||.+|++|||+...
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 2ojr_A 46 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEEC-CSSCBTTTTTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEeC
Confidence 5678999999999999999999999999999999999999 57899999999999999999654
No 82
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.16 E-value=3.1e-11 Score=112.38 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=57.9
Q ss_pred eEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCC---e---eeccccchhhhcCCCCCCEEEEEecc
Q 004117 672 FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ---R---IIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G---~---~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.+.++|.+++||.+||.+|++++||||++|||+|.| + +|.+|++||++|||.+|++|||++..
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~ 87 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVT 87 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECT
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCC
Confidence 578899999999999999999999999999999977 4 55578999999999999999999865
No 83
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=2.2e-11 Score=106.89 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=54.5
Q ss_pred EEE-EecCcccHHHHHHHHHHH-hCCCCCCcEEEeC--CeeeccccchhhhcCCCCCCEEEEEe
Q 004117 673 VNL-KVSASTSIYQLKMMIWES-LGVVKENQILHKG--QRIIDQECATLADLNIFPGDKLWVQD 732 (773)
Q Consensus 673 ~~l-~vs~~~tv~~lK~~I~e~-~gi~p~~Q~L~~~--G~~L~~d~~TL~~~~I~~~~~l~l~~ 732 (773)
..| +|++++||.+||.+|+++ .||||++|||+|. |++| +|+.||++|||.+|++|++++
T Consensus 25 ~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L-~D~~tL~~y~i~~~stl~~KD 87 (88)
T 2dzj_A 25 CFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSL-KDEDVLQKLPVGTTATLYFRD 87 (88)
T ss_dssp EEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCC-CTTCBTTTSSCCSEEEEEECC
T ss_pred eEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCc-CCCCCHHHcCCCCCCEEEEEe
Confidence 368 999999999999999995 8999999999977 9999 688999999999999999983
No 84
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.16 E-value=3.9e-11 Score=119.67 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=60.2
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++++||||++|+|+|+|++| +|+.||++|||.+|++|||+...
T Consensus 115 Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L-~D~~tL~dygI~~gstI~Lvlrl 178 (189)
T 3q3f_A 115 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 178 (189)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEEC-CTTCBGGGGTCCTTCEEEECCCC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEEC-CCCCCHHHCCCCCCCEEEEEEEc
Confidence 47789999999999999999999999999999999999999 57899999999999999999654
No 85
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.14 E-value=6e-11 Score=115.12 Aligned_cols=64 Identities=23% Similarity=0.266 Sum_probs=60.4
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEE-e-CCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILH-K-GQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~-~-~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++++||||++|+|+ | +|++| +|+.||++|||.+|++|+|+...
T Consensus 12 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L-~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 12 GNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVAL-QDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp SCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBC-CTTSCGGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCC-CCCCCHHHcCCCCCCEEEEEccC
Confidence 46789999999999999999999999999999999 9 89999 68899999999999999999873
No 86
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.13 E-value=4.9e-12 Score=118.81 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=0.0
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.|+|++++||.+||.+|++.+||||++|+|+|+|++| +|+.||++|||.+|++|+|++..
T Consensus 11 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~~~~I~~gsti~l~~rl 73 (128)
T 3u5e_m 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 73 (128)
T ss_dssp ----------------------------------------------------------------
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEEC-CCCCchhhhccCCCCEEEEEEEc
Confidence 5688999999999999999999999999999999999999 68899999999999999999765
No 87
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.13 E-value=5.7e-11 Score=116.94 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=59.2
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.++|++++||.+||.+|++++||||++|+|+|+|++| +|+.||++|||.+|++|||+...
T Consensus 106 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L-~D~~tL~~y~i~~g~tl~l~~rl 169 (172)
T 3u30_A 106 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 169 (172)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEEC-CTTSBSGGGTCCTTCEEEECC--
T ss_pred CcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccC-CCCCcHHHhCCCCCCEEEEEEec
Confidence 47789999999999999999999999999999999999999 58899999999999999998653
No 88
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.12 E-value=7.8e-11 Score=107.10 Aligned_cols=63 Identities=27% Similarity=0.176 Sum_probs=56.6
Q ss_pred ceEEEE--------ecCc-ccHHHHHHHHHHHh--CCCCCC-cEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLK--------VSAS-TSIYQLKMMIWESL--GVVKEN-QILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~--------vs~~-~tv~~lK~~I~e~~--gi~p~~-Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+.+.|+ |+++ +||.+||.+|++++ ||||++ |+|+|+|+.| +|++||++|||.+|++|||+...
T Consensus 26 ~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L-~D~~tL~~y~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 26 PKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKL-KDDQTLDFYGIQPGSTVHVLRKS 100 (107)
T ss_dssp CCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEEC-CTTCBHHHHTCCTTCEEEEEESS
T ss_pred cEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeEC-CCCCcHHHcCCCCCCEEEEEeCC
Confidence 456677 5555 99999999999999 999999 9999999999 57899999999999999999765
No 89
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.12 E-value=8e-11 Score=115.88 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=60.3
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++++||||++|+|+|+|++| +|+.||++|||.+|++|+|+...
T Consensus 30 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L-~d~~tL~~~~i~~~~~l~l~~~~ 93 (172)
T 3u30_A 30 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 93 (172)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTCBTGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccc-cccCCHhHcCCcccceeeeeecc
Confidence 46789999999999999999999999999999999999999 67899999999999999999764
No 90
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.11 E-value=4.8e-11 Score=108.55 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=57.8
Q ss_pred ceEEEEec-CcccHHHHHHHHHHHhCCCCCCcEEEeCCe-----------ee---ccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVS-ASTSIYQLKMMIWESLGVVKENQILHKGQR-----------II---DQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs-~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~-----------~L---~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+...|+|+ +++||.+||.+|++++||||++|+|+|.|+ +| .+|++||++|||..|++|||+...
T Consensus 17 G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~~ 95 (107)
T 1wf9_A 17 GLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYEG 95 (107)
T ss_dssp CEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeCC
Confidence 44478999 999999999999999999999999999998 54 478999999999999999999654
No 91
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.11 E-value=7.4e-12 Score=120.80 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=0.0
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.|+|++++||.+||.+|++.+||||++|+|+|+|++| +|+.||++|||.+|++|+|++..
T Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~dygI~~gstL~Lvlrl 73 (152)
T 3u5c_f 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp ----------------------------------------------------------------
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEc-cccCcHHHcCCCCCCEEEEEeec
Confidence 5678999999999999999999999999999999999999 58899999999999999999765
No 92
>1w6v_A Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP, DUB, deubiquitylation, deubiquitinating enzyme, ubiquitin specific protease; NMR {Homo sapiens} SCOP: d.324.1.1
Probab=99.08 E-value=1.9e-10 Score=109.64 Aligned_cols=86 Identities=20% Similarity=0.497 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEeHHHHHHhhhc---------------cCCCCCCCccccccCC--CCCCCCcc--c
Q 004117 210 ERKQEVRSLLSEAPVPSLEEPFYWISSDWLRQWADK---------------IFPSTLDNTSIQCLHG--KVPESKIG--S 270 (773)
Q Consensus 210 Err~~v~~i~~~~~~~~~~~~~~~Is~~WL~~W~~~---------------~~PgpIdNs~~lC~Hg--~l~p~k~~--~ 270 (773)
+.++.|++++.. ....++..|.||..||++|..+ ..||||||++|++..+ .|.|.... .
T Consensus 32 ~Qr~~I~~l~~~--~l~~gd~~YlIs~~W~~~W~~yv~~~~~~~~~~~~~~~~pGpIDNs~Ll~~~~~~~Lk~~L~e~~D 109 (141)
T 1w6v_A 32 TQRSDIATLLKT--SLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDNSGLLKDGDAQSLKEHLIDELD 109 (141)
T ss_dssp HHHHHHHHHHSS--CCCTTCEEEEEEHHHHHHHHHHHTCSTTCCSSTTCSTTCCCSBCCTTTBCSSCTTCBCSSCCTTTT
T ss_pred HHHHHHHHHHHc--CCCCCCEEEEECHHHHHHHHHHhcCCccccccccccCCCCCCCcCHHHhCcCccccccccccCCCC
Confidence 445556666653 2345678999999999999964 2589999999999874 45554332 3
Q ss_pred cccccHHHHHHHHHHcC---CCCCCCCccc
Q 004117 271 MKRISSKAWNKFFFKYN---GGPALTNDDY 297 (773)
Q Consensus 271 ~k~Vs~~aw~~L~~~yg---GgP~l~~~~~ 297 (773)
.-.||+++|++|+++|| |||.+.+..+
T Consensus 110 y~lVp~~vW~~L~~wYG~~~ggp~I~R~vi 139 (141)
T 1w6v_A 110 YILLPTEGWNKLVSWYTLMEGQEPIARKVV 139 (141)
T ss_dssp EEEECHHHHHHHHHHSCBCTTCCCCEEECC
T ss_pred EEEECHHHHHHHHHHHCCCCCCCceeEeee
Confidence 34599999999999999 8998865443
No 93
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.07 E-value=9.5e-11 Score=104.00 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=55.7
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+.+.|+|++++||.+||.+|++++ |.+|||+|+|++|.||++||++|||.+|++|||+...
T Consensus 18 ~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 18 TEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp EEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred CEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 567899999999999999999998 9999999999999544499999999999999999765
No 94
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.05 E-value=2.9e-10 Score=108.81 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=59.8
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+.++|++++||.+||.+|++++||||++|+|+|+|++| +|+.||++|||.+|++|||+...
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L-~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBTGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeEC-cCcccHHHhccCCCCeeEEEeec
Confidence 35788999999999999999999999999999999999999 58899999999999999998754
No 95
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.03 E-value=3.4e-10 Score=108.32 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=59.4
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+++.++|++++||.+||.+|+++.||||++|+|+|+|+.| +|++||++|||.+|++|||+...
T Consensus 87 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L-~d~~tL~~~~i~~~~~i~l~~r~ 149 (152)
T 3b08_A 87 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 149 (152)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEEC-CCCCCHHHcCCCCCCEEEEEEec
Confidence 6789999999999999999999999999999999999999 58899999999999999999653
No 96
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.97 E-value=3.4e-10 Score=98.66 Aligned_cols=63 Identities=29% Similarity=0.335 Sum_probs=56.0
Q ss_pred eEEEE-ecCcccHHHHHHHHHHHhCCCCCCcEEEeCC--eeec--cccchhhhcCCCCCCEEEEEecc
Q 004117 672 FVNLK-VSASTSIYQLKMMIWESLGVVKENQILHKGQ--RIID--QECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 672 ~~~l~-vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G--~~L~--~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
...++ |++++||.+||.+|++++||||++|+|+|++ |+|. +|++||++|||.+|++|+|+.++
T Consensus 11 ~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 11 THLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp EEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 33477 9999999999999999999999999999874 8883 47899999999999999999665
No 97
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.95 E-value=9.5e-10 Score=117.22 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=58.9
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
++++.|+|++++||.+||.+|++++||||++|||+|+|++| +|++||++|||.+|++|+|+.+
T Consensus 243 Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L-~D~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 243 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEEC-CTTSBTGGGTCCTTCEEEEEC-
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeec-CCCCCHHHcCCCCCCEEEEEEe
Confidence 36789999999999999999999999999999999999999 5889999999999999999964
No 98
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=98.93 E-value=1.4e-09 Score=111.24 Aligned_cols=85 Identities=20% Similarity=0.529 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEeHHHHHHhhhcc---------------CCCCCCCccccccCC--CCCCCCcc-
Q 004117 208 ISERKQEVRSLLSEAPVPSLEEPFYWISSDWLRQWADKI---------------FPSTLDNTSIQCLHG--KVPESKIG- 269 (773)
Q Consensus 208 ~~Err~~v~~i~~~~~~~~~~~~~~~Is~~WL~~W~~~~---------------~PgpIdNs~~lC~Hg--~l~p~k~~- 269 (773)
+++.|+.|.+++.. ....++..|+||+.||++|..+. .||||||++|+|.|+ .|.|....
T Consensus 6 l~~Q~~~i~~l~~~--~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGpIdNs~L~~~~~~~~Lk~~l~e~ 83 (217)
T 4a3p_A 6 LDTQRSDIATLLKT--SLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDNSGLLKDGDAQSLKEHLIDE 83 (217)
T ss_dssp HHHHHHHHHHHTTC--CCCTTCEEEEEEHHHHHHHHHHHTCSTTCCTTTTCGGGCCCSBCCGGGBCCC---CBCSSCCBT
T ss_pred HHHHHHHHHHHHhc--CCCCCCEEEEEchHHHHHHHHHhcccccccccccccCCCCCcEehHHhhCCCCCcccCcCcccC
Confidence 34556678887764 34567889999999999998542 689999999999864 56665322
Q ss_pred -ccccccHHHHHHHHHHcC---CCCCCCC
Q 004117 270 -SMKRISSKAWNKFFFKYN---GGPALTN 294 (773)
Q Consensus 270 -~~k~Vs~~aw~~L~~~yg---GgP~l~~ 294 (773)
....||+++|++|+++|| |||.+..
T Consensus 84 ~Dy~~vp~~vW~~l~~wYG~~~ggp~I~R 112 (217)
T 4a3p_A 84 LDYILLPTEGWNKLVSWYTLMEGQEPIAR 112 (217)
T ss_dssp TTEEEEEHHHHHHHHHHHCBCTTCCCCEE
T ss_pred CCEEEECHHHHHHHHHHhCCCCCCCCcce
Confidence 355799999999999999 9998753
No 99
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.93 E-value=1.1e-10 Score=115.88 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++.+||||++|+|+|+|++| +|+.||+ +|+||||++..
T Consensus 10 GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~L-eD~~TLs-----~~STLhLvlRL 68 (189)
T 2xzm_9 10 GETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIA-PNTELVT-----DDVTYYLSLKL 68 (189)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeEC-CCCCccc-----CCCEEEEEEec
Confidence 36789999999999999999999999999999999999999 5788998 99999999765
No 100
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.89 E-value=2.4e-09 Score=94.95 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=60.2
Q ss_pred CCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 669 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 669 ~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.++.+.++|.+++++..||.++.++.||+|.+|||+|+|++| +++.|+++|++..||+|+|+...
T Consensus 16 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l-~~~~Tp~dl~medgD~Idv~~~~ 80 (94)
T 2io1_B 16 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQLEMEDEDTIDVFQQQ 80 (94)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTTTCCTTCEEEEEECC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHcCCCCCCEEEEEEec
Confidence 346789999999999999999999999999999999999999 57789999999999999999654
No 101
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.85 E-value=3.8e-09 Score=94.10 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=57.6
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCC-------eeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ-------RIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G-------~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+..+.+.+..++||.+||.+|+..+|+||..|+|++.+ ..|.+|.+||+.|||.+|++|||.+..
T Consensus 22 ~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~ 93 (97)
T 1wjn_A 22 RQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSG 93 (97)
T ss_dssp SCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecC
Confidence 35677889999999999999999999999999999862 337899999999999999999999644
No 102
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.84 E-value=2e-09 Score=116.07 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=58.3
Q ss_pred CCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEE---eCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 669 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILH---KGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 669 ~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~---~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.++++.|+|++++||.+||.+|++++||||++|+|+ |+|++| .|+.||++|||.+|++|+|+-+.
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l-~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTA-ADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBC-CTTSBTTSSCCC--CEEEEECCC
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCccc-CccccHHHcCCCCCCEEEEEccc
Confidence 346789999999999999999999999999999999 899999 57889999999999999999655
No 103
>1w6v_A Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP, DUB, deubiquitylation, deubiquitinating enzyme, ubiquitin specific protease; NMR {Homo sapiens} SCOP: d.324.1.1
Probab=98.83 E-value=1.7e-08 Score=96.16 Aligned_cols=83 Identities=14% Similarity=0.289 Sum_probs=58.3
Q ss_pred CCCCCCeEEEechHHHHHHHHhcCCCCCCCC-----CCCCccccccccceeeccccccccCCCccccccCcccccCCCCC
Q 004117 460 PLSLDCKYYLLPSTWLTKWRNYISPSGKNAS-----SIEPEILDGVIDSLKCEKHLRLLERPPDLVCKRGSIYQKGSATD 534 (773)
Q Consensus 460 ~~~~~~~~y~Vp~~wl~~Wr~fv~~~~~~~~-----~~~P~~id~~~~~llC~~H~~Ll~~p~~~~~~~g~~~q~~~~~~ 534 (773)
++.++..+||||+.|+++|++||.....+.. ..+|++||| +.|++ ........+.. ....
T Consensus 44 ~l~~gd~~YlIs~~W~~~W~~yv~~~~~~~~~~~~~~~~pGpIDN--s~Ll~-~~~~~~Lk~~L------------~e~~ 108 (141)
T 1w6v_A 44 SLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDN--SGLLK-DGDAQSLKEHL------------IDEL 108 (141)
T ss_dssp CCCTTCEEEEEEHHHHHHHHHHHTCSTTCCSSTTCSTTCCCSBCC--TTTBC-SSCTTCBCSSC------------CTTT
T ss_pred CCCCCCEEEEECHHHHHHHHHHhcCCccccccccccCCCCCCCcC--HHHhC-cCccccccccc------------cCCC
Confidence 4567899999999999999999965431100 258999997 66776 44321111211 1223
Q ss_pred CeeeeCHHHHHHHHHHhc---CCccc
Q 004117 535 GLTIVTENDWKWFCEEWG---GIKEK 557 (773)
Q Consensus 535 ~~~~I~e~eW~~l~~~y~---~~~~~ 557 (773)
++++|+++.|++|.+.|| ++++|
T Consensus 109 Dy~lVp~~vW~~L~~wYG~~~ggp~I 134 (141)
T 1w6v_A 109 DYILLPTEGWNKLVSWYTLMEGQEPI 134 (141)
T ss_dssp TEEEECHHHHHHHHHHSCBCTTCCCC
T ss_pred CEEEECHHHHHHHHHHHCCCCCCCce
Confidence 599999999999999999 66653
No 104
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.81 E-value=7.5e-09 Score=87.14 Aligned_cols=62 Identities=23% Similarity=0.191 Sum_probs=58.1
Q ss_pred CCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 669 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 669 ~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
.++.+.++|.+++++..|+..+.++.||+|.+|||+|+|++| +++.|.++|++..||+|++.
T Consensus 10 ~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 10 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp TSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEEC-CTTCCTTTTTCCTTEEEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHcCCCCCCEEEEE
Confidence 346899999999999999999999999999999999999999 56689999999999999986
No 105
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=98.81 E-value=3.7e-09 Score=109.02 Aligned_cols=85 Identities=25% Similarity=0.545 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEeHHHHHHhhhcc---------------CCCCCCCccccccCC--CCCCCCcc-
Q 004117 208 ISERKQEVRSLLSEAPVPSLEEPFYWISSDWLRQWADKI---------------FPSTLDNTSIQCLHG--KVPESKIG- 269 (773)
Q Consensus 208 ~~Err~~v~~i~~~~~~~~~~~~~~~Is~~WL~~W~~~~---------------~PgpIdNs~~lC~Hg--~l~p~k~~- 269 (773)
.++.|+.|++++.. ....++..|.||+.|+++|..+. .||||||++|++.++ .|.|....
T Consensus 15 l~~Qr~~i~~l~~~--~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGPIDNs~L~~~~~~~~Lk~~l~e~ 92 (231)
T 3jyu_A 15 VETQKTELGALMGT--TLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDNSGLFSDPESQTLKEHLIDE 92 (231)
T ss_dssp HHHHHHHHHTTTTC--CCCTTCEEEEEEHHHHHHHHHHHTSSSCCTTTTTCGGGCCCSBCCGGGEEETTTTEECSSCCBT
T ss_pred HHHHHHHHHHHHhc--CCCCCCEEEEEchHHHHHHHHHhcccccccccccccCCCCCcEehHHHhCcCCCcccccccccC
Confidence 34455667777664 33557789999999999998552 489999999999873 45554322
Q ss_pred -ccccccHHHHHHHHHHcC---CCCCCCC
Q 004117 270 -SMKRISSKAWNKFFFKYN---GGPALTN 294 (773)
Q Consensus 270 -~~k~Vs~~aw~~L~~~yg---GgP~l~~ 294 (773)
....||+++|++|+++|| |||.+..
T Consensus 93 ~Dy~~vp~~vW~~l~~wYG~~~gg~~I~R 121 (231)
T 3jyu_A 93 LDYVLVPAEAWNKLLNWYGCVEGQQPIVR 121 (231)
T ss_dssp TTEEEEEHHHHHHHHHHHCBCTTCCCCEE
T ss_pred CCEEEECHHHHHHHHHHhCCCCCCCceEE
Confidence 344599999999999999 8898753
No 106
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.75 E-value=1.6e-08 Score=89.17 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=60.2
Q ss_pred CCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 669 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 669 ~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.++.+.++|.+++++..|+..+.++.||+|.+|||+|+|++| +++.|.++|++..||+|+++...
T Consensus 14 ~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l-~~~~Tp~dl~medgD~Idv~~~q 78 (91)
T 2io0_B 14 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQLEMEDEDTIDVFQQQ 78 (91)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEEC-CTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHcCCCCCCEEEEEEec
Confidence 346789999999999999999999999999999999999999 56689999999999999999655
No 107
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.74 E-value=5.7e-09 Score=114.20 Aligned_cols=64 Identities=13% Similarity=0.100 Sum_probs=57.5
Q ss_pred CceEEEEecCcccHHHHHHHHHH---HhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEE-EEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWE---SLGVVKENQILHKGQRIIDQECATLADLNIFPGDKL-WVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e---~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l-~l~~~~ 734 (773)
++++.|+|++++||.+||.+|++ +.|||+++|||+|+||.| +|++||.+|||.+|++| +|+...
T Consensus 17 Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L-~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 17 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKIL-SDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp TEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEE-CSSSBTTTTCCCTTSCEEEEEECC
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeec-CCcCCHHHcCCCCCCEEEEEEecC
Confidence 36789999999999999999999 577999999999999999 57899999999999999 666543
No 108
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.74 E-value=2.7e-08 Score=85.35 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=56.5
Q ss_pred eEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 672 FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
.+.++|.+++++..|+..+.++.||++.+|||+|+|++| .++.|+++|++..||+|++.
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKL-SGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEEC-CSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHcCCCCCCEEEEe
Confidence 789999999999999999999999999999999999999 56789999999999999986
No 109
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.67 E-value=3.8e-08 Score=87.11 Aligned_cols=64 Identities=22% Similarity=0.200 Sum_probs=59.4
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+.++|.+++++..|+..+.++.||++.+|||+|+|++| .++.|+++|++..||+|+++...
T Consensus 27 g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~dl~medgD~Idv~~~q 90 (93)
T 2d07_B 27 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQLEMEDEDTIDVFQQQ 90 (93)
T ss_dssp SCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEc-CCCCCHHHcCCCCCCEEEEEeec
Confidence 35789999999999999999999999999999999999999 57789999999999999998654
No 110
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.63 E-value=4.1e-08 Score=88.60 Aligned_cols=64 Identities=22% Similarity=0.200 Sum_probs=59.5
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+.++|.+++++..|+..+.++.||++.+|||+|+|++| .++.|+++|++..||+|+++...
T Consensus 34 g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l-~~~~Tp~dl~medgD~Idv~~~q 97 (104)
T 1wz0_A 34 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQLEMEDEDTIDVFQQQ 97 (104)
T ss_dssp SCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBC-CTTSCTTTTTCCTTEEEEECCCC
T ss_pred CCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHcCCCCCCEEEEEEec
Confidence 36789999999999999999999999999999999999999 57789999999999999999654
No 111
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.60 E-value=4.9e-08 Score=88.88 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=59.5
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+.++|.+++++..|+..+.++.||++.+|||+|+|++| .++.|+++|++..||+|+++...
T Consensus 36 g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L-~~~~Tp~dl~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 36 GAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPI-DETKTPEELGMEDDDVIDAMVEQ 99 (110)
T ss_dssp SCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBC-CSSSHHHHHHCSSEEEEEEECCC
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHcCCCCCCEEEEEEcc
Confidence 35789999999999999999999999999999999999999 56789999999999999999654
No 112
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.59 E-value=6.7e-08 Score=87.38 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=59.6
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+.++|..++++..|+..+.++.||++.+|||+|+|++| +++.|.++|++..||+|+++...
T Consensus 40 g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl-~~~~Tp~dl~medgD~Idv~~~q 103 (106)
T 2eke_C 40 SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDLDMEDNDIIEAHREQ 103 (106)
T ss_dssp SCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTTTCCTTEEEEEEECC
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEc-CCCCCHHHcCCCCCCEEEEEeec
Confidence 46789999999999999999999999999999999999999 57789999999999999998654
No 113
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=98.18 E-value=1.3e-06 Score=94.54 Aligned_cols=35 Identities=31% Similarity=0.584 Sum_probs=30.5
Q ss_pred cceEEEEEEEeecCCCCCceEEEEEEc-CCCCcEEEEcCcc
Q 004117 29 LIYDLSAVLIHKGTAVNSGHYIALIKD-ENTGQWWEFDDEH 68 (773)
Q Consensus 29 ~~Y~L~aVliH~G~sa~sGHY~a~ik~-~~~~~W~~FdD~~ 68 (773)
..|+|+|||. |.+|||+||||. +.+++||.||-.-
T Consensus 275 g~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDsma 310 (374)
T 2vhf_A 275 QNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDSMA 310 (374)
T ss_dssp CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEETTC
T ss_pred eeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEechh
Confidence 6899999999 799999999995 3579999999543
No 114
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.15 E-value=4.6e-06 Score=76.18 Aligned_cols=64 Identities=20% Similarity=0.164 Sum_probs=59.2
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+.++|..++++..|+....++.|+++.++||+|+|++| ++..|.++|++..||+|.+....
T Consensus 50 g~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI-~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 50 SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp SCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEEC-CTTCCTTTTTCCTTCEEEEEECC
T ss_pred CCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeEC-CCCCCHHHcCCCCCCEEEEEeec
Confidence 35689999999999999999999999999999999999999 56789999999999999998654
No 115
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.08 E-value=4.3e-06 Score=83.68 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=61.2
Q ss_pred CCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 669 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 669 ~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.++.+.++|..++++..|+....++.|+++.++||+|+|++| .++.|.++|++..||+|+++...
T Consensus 37 ~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI-~~~~TP~dL~MEdgD~Idv~~~q 101 (200)
T 3pge_A 37 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDLDMEDNDIIEAHREQ 101 (200)
T ss_dssp SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEEC-CTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEc-CCCCCHHHcCCCCCCEEEEEecc
Confidence 457899999999999999999999999999999999999999 57789999999999999999877
No 116
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.05 E-value=4e-06 Score=73.76 Aligned_cols=41 Identities=10% Similarity=0.150 Sum_probs=38.7
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeec
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIID 711 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~ 711 (773)
..+.|.|.+++||..||++|++++||||.+|+|+|+|++|.
T Consensus 24 ~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 24 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred eEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 56789999999999999999999999999999999999984
No 117
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.93 E-value=4.9e-06 Score=71.38 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=53.1
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCee---e-ccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRI---I-DQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~---L-~~d~~TL~~~~I~~~~~l~l~ 731 (773)
+...|+|++++||.+|+.+|.++++|+++.|.|+++-.+ | ...++||+++||..||+|+|.
T Consensus 14 G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 14 GVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 777888999999999999999999999999999876654 3 237889999999999999986
No 118
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.90 E-value=1.1e-05 Score=79.23 Aligned_cols=65 Identities=17% Similarity=0.106 Sum_probs=60.7
Q ss_pred CCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 669 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 669 ~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.++.+.++|..++++..|+....++.||++.++||+|+|++| +++.|.++|++.+||+|+++...
T Consensus 65 dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI-~~ddTPeDLdMEDGDtIDV~leQ 129 (207)
T 3tix_A 65 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEI-QADQTPEDLDMEDNDIIEAHREQ 129 (207)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEEC-CSSCCTTTTTCCTTEEEEECCCC
T ss_pred CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeec-CCCCCHHHcCCCCCCEEEEEEec
Confidence 346789999999999999999999999999999999999999 57789999999999999999776
No 119
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.46 E-value=1.8e-05 Score=78.88 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=0.0
Q ss_pred CCceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 669 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 669 ~~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.++.+.++|..++++..|+....++.|+++.++|++|+|++| +++.|.++|++.+||+|+++...
T Consensus 29 dGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI-~dddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 29 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEec-CCCCCHHHcCCCCCCEEEEEecc
Confidence 346789999999999999999999999999999999999999 57789999999999999999655
No 120
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.44 E-value=0.00052 Score=57.61 Aligned_cols=62 Identities=8% Similarity=0.011 Sum_probs=56.9
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCC-CcEEEeCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKE-NQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~-~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
..+.+.|.+++||.+|=..--.+.||++. .-+|.|.|..| +..+|+++|++..||.|.++++
T Consensus 20 ~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRL-dp~~tp~DlemeD~D~IDvmL~ 82 (82)
T 3goe_A 20 EDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWL-DPNDQVQSTELEDEDQVSVVLD 82 (82)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEEC-CTTSBGGGSSCCTTCEEEEEC-
T ss_pred CCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCccc-CccCChhhhCCcCCceeeeeeC
Confidence 66889999999999999999999999999 89999999999 5778999999999999998853
No 121
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.90 E-value=0.0013 Score=66.50 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=59.8
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
++.+.++|..++++..|+....++.|+++.++||+|.|+.+ .++.|-.++++..||+|.+....
T Consensus 30 ~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i-~~~~Tpk~L~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 30 SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDLDMEDNDIIEAHREQ 93 (209)
T ss_dssp SCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEEC-CTTCCTTTTTCCTTEEEEEECSC
T ss_pred CCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEec-cCCCChHHhhhcccccchhhccc
Confidence 36789999999999999999999999999999999999999 57789999999999999998765
No 122
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.75 E-value=0.0036 Score=55.45 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=55.2
Q ss_pred eEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 672 FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
.+.++|..++++..|...-.++.|+++..-+|+|+|..| ..+.|.+++++..||+|.+.
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI-~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKL-SGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEEC-CSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEc-CCCCCHHHcCCCCCCEEEEe
Confidence 678999999999999999999999999999999999999 46689999999999999875
No 123
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.60 E-value=0.0019 Score=59.91 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=53.1
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCC-------------------------------------CcEEEe--CCeeec
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKE-------------------------------------NQILHK--GQRIID 711 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~-------------------------------------~Q~L~~--~G~~L~ 711 (773)
...++.|+.+.||.++++.|-.++||++. .|+|.. ++..|
T Consensus 22 ~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~~WL- 100 (128)
T 2kc2_A 22 TVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWL- 100 (128)
T ss_dssp CEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSEEEE-
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCCCcc-
Confidence 67889999999999999999999999966 567764 34778
Q ss_pred cccchhhhcCCCCCCEEEEE
Q 004117 712 QECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 712 ~d~~TL~~~~I~~~~~l~l~ 731 (773)
|++.||.+.||.+++||.|.
T Consensus 101 D~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 101 DHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CSSSCHHHHTCCTTSEEEEE
T ss_pred cCCCcHHHcCCCCCCEEEEE
Confidence 79999999999999999997
No 124
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.52 E-value=0.0004 Score=75.18 Aligned_cols=63 Identities=17% Similarity=0.109 Sum_probs=0.0
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+.+.++|..++++..|+....++.|+++.++|+.|+|++| .++.|.++|++.+||+|.+....
T Consensus 31 ~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI-~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 31 SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp ----------------------------------------------------------------
T ss_pred cEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeEC-CCCCChHHcCCCccchhhhhhcc
Confidence 5778999999999999999999999999999999999999 46789999999999999999765
No 125
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=95.96 E-value=0.0012 Score=72.90 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=0.0
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+.+.++|..++++..|+....++.|+++.+++++|+|++| .++.|-+++++..||+|.+...+
T Consensus 40 ~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i-~~~~Tp~~l~med~d~i~~~~~q 102 (389)
T 4da1_A 40 SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQAPEDLDMEDNDIIEAHREQ 102 (389)
T ss_dssp ----------------------------------------------------------------
T ss_pred cEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHcCCCCCCEeeeeecc
Confidence 5678999999999999999999999999999999999999 47789999999999999999776
No 126
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=95.72 E-value=0.02 Score=49.08 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=51.8
Q ss_pred eEEEEecCcccHHHHHHHHHHHhCCCCCCcEEE--eCCeeec--cccchhhhcCCCCCCEEEEEec
Q 004117 672 FVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIID--QECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~--~~G~~L~--~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
.+.-...+++||.+|..-|.. .|.++....|+ |-.|.|. |.++||+++|+.|.++|+|...
T Consensus 19 r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~k 83 (84)
T 3qx1_A 19 FLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEAK 83 (84)
T ss_dssp EEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEec
Confidence 456678899999999999998 78888888998 5578885 5689999999999999999743
No 127
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=95.49 E-value=0.035 Score=48.56 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=57.7
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEe
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 732 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~ 732 (773)
++.+-++|..++.+..|....-++.|+.+.+-|+.|+|..+ .++.|-+++++..||+|.++.
T Consensus 30 g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI-~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 30 ADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETEL-SPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp SSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEEC-CTTSCHHHHTCCSSCEEEEEE
T ss_pred CcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCC-CCCCCHhHcCCCCCCEEEEEE
Confidence 47889999999999999999999999999999999999999 577899999999999998875
No 128
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.23 E-value=0.051 Score=47.10 Aligned_cols=63 Identities=14% Similarity=0.004 Sum_probs=57.2
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
+...++|++++|+.+|=..--+++|+.+++=.|.|++|.| |=+..+.-.||..|+.|.|+...
T Consensus 20 rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~l-DLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 20 RRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVL-DLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp CEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEE-SSSCBHHHHCCCSSCEEEEECSS
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEec-cccceeEecCCCCCCEEEEEEcc
Confidence 3458899999999999999999999999888999999999 67899999999999999999544
No 129
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=94.46 E-value=0.088 Score=47.43 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=53.7
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEE--eCCeeec--cccchhhhcCCCCCCEEEEEec
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIID--QECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~--~~G~~L~--~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
..+.-.+.+++||.+|..-|....+.+...-.|+ |--|.|. |.++||+++|+.|..+|++...
T Consensus 24 ~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 24 SSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred CEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 4577789999999999999999988887777887 5678886 4589999999999999999843
No 130
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=93.81 E-value=0.088 Score=44.89 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=49.9
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhCCCCC----Cc-EEEeCCeeeccccchhhhcCCCCCCEEEE
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLGVVKE----NQ-ILHKGQRIIDQECATLADLNIFPGDKLWV 730 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~gi~p~----~Q-~L~~~G~~L~~d~~TL~~~~I~~~~~l~l 730 (773)
.+++-|.++...||+.|+.-+++.++++.. .| |+.-.|.-| .+.++|++++|..||.|-+
T Consensus 16 ~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L-~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 16 GSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVF-SGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEE-ETTSBTGGGTCCTTCEEEE
T ss_pred CceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEE-cCCCEEeeCCcCCCCEEEE
Confidence 378999999999999999999999999862 22 455566777 5778999999999999864
No 131
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=92.09 E-value=0.21 Score=46.03 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=52.6
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEE--eCCeee--ccccchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRII--DQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~--~~G~~L--~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
..+.-.+.+++||.+|..-|... |.++..-.|+ |-.|.| .|.++||+++|+.|..+|+|...+
T Consensus 54 ~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~d 120 (124)
T 1wj4_A 54 KREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQESG 120 (124)
T ss_dssp CEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEECC
T ss_pred CEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEcc
Confidence 34566788999999999999887 8888888887 567889 556899999999999999998443
No 132
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=92.05 E-value=0.26 Score=44.38 Aligned_cols=60 Identities=23% Similarity=0.262 Sum_probs=43.0
Q ss_pred eEEEEecCcccHHHHHHHHHHHh--CCCCC------CcEEEe----CCeeecccc------------chhhhcCCCCCCE
Q 004117 672 FVNLKVSASTSIYQLKMMIWESL--GVVKE------NQILHK----GQRIIDQEC------------ATLADLNIFPGDK 727 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~--gi~p~------~Q~L~~----~G~~L~~d~------------~TL~~~~I~~~~~ 727 (773)
.+.++|-..|||.|+|++|.+.+ |+|-. +..|-+ .|+.|.|.+ .||++|+|.+|++
T Consensus 25 ~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgat 104 (111)
T 4e71_A 25 AIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDGAT 104 (111)
T ss_dssp CEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTTCE
T ss_pred ceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCCCE
Confidence 47899999999999999999885 55432 333433 346564422 4899999999999
Q ss_pred EEEE
Q 004117 728 LWVQ 731 (773)
Q Consensus 728 l~l~ 731 (773)
|-|+
T Consensus 105 l~l~ 108 (111)
T 4e71_A 105 LILS 108 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
No 133
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=92.04 E-value=0.34 Score=45.11 Aligned_cols=63 Identities=22% Similarity=0.190 Sum_probs=45.0
Q ss_pred ceEEEEecCcccHHHHHHHHHHHh--CCCCCCc-------EEEe----CCee-ecccc------------chhhhcCCCC
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESL--GVVKENQ-------ILHK----GQRI-IDQEC------------ATLADLNIFP 724 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~--gi~p~~Q-------~L~~----~G~~-L~~d~------------~TL~~~~I~~ 724 (773)
..+.++|=.-|||-|+|++|.+.+ |+| ..| -|-. +|+. |.|.+ .||+.|+|..
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~P-ySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVP-LTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSC-GGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCc-cccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 457899999999999999999996 444 333 2322 2432 53321 2899999999
Q ss_pred CCEEEEEecc
Q 004117 725 GDKLWVQDSE 734 (773)
Q Consensus 725 ~~~l~l~~~~ 734 (773)
|++|-|+-..
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999998433
No 134
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=91.51 E-value=0.47 Score=42.55 Aligned_cols=62 Identities=19% Similarity=0.148 Sum_probs=50.2
Q ss_pred eEEEEecCcccHHHHHHHHHHHhCCCCCCcEEE--eCCeeec-cccchhhhcCCCCCCEEEEEecc
Q 004117 672 FVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIID-QECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~--~~G~~L~-~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.+.-.+..++||.+|..-|... +..+..-.|+ |-.|.|. +.++||+++||.+..+|+|...+
T Consensus 35 r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~~ 99 (109)
T 2cr5_A 35 VLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKE 99 (109)
T ss_dssp EEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred EEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeCC
Confidence 4555677899999999999964 6677777786 5678886 56899999999999999998544
No 135
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=90.19 E-value=0.79 Score=41.64 Aligned_cols=62 Identities=26% Similarity=0.287 Sum_probs=44.7
Q ss_pred ceEEEEecCcccHHHHHHHHHHHh--CCCCC------CcEEEe----CCe-eecccc------------chhhhcCCCCC
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESL--GVVKE------NQILHK----GQR-IIDQEC------------ATLADLNIFPG 725 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~--gi~p~------~Q~L~~----~G~-~L~~d~------------~TL~~~~I~~~ 725 (773)
..+.++|-.-|||.|+|++|.+.+ |+|-. +..|-+ .|+ .|.|.+ .||++|+|.+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 347889999999999999999885 55543 334432 223 243322 38999999999
Q ss_pred CEEEEEe
Q 004117 726 DKLWVQD 732 (773)
Q Consensus 726 ~~l~l~~ 732 (773)
++|-|+-
T Consensus 107 atl~l~~ 113 (117)
T 4e74_A 107 SVVALVS 113 (117)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9999974
No 136
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=89.52 E-value=0.89 Score=41.78 Aligned_cols=64 Identities=22% Similarity=0.189 Sum_probs=46.0
Q ss_pred ceEEEEecCcccHHHHHHHHHHHh--CCCC------CCcEEEe----CCee-ecccc------------chhhhcCCCCC
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESL--GVVK------ENQILHK----GQRI-IDQEC------------ATLADLNIFPG 725 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~--gi~p------~~Q~L~~----~G~~-L~~d~------------~TL~~~~I~~~ 725 (773)
..+.++|-..|||.|+|++|.+.+ |+|- ++..|-+ .|+. |.|.+ .||++|+|.+|
T Consensus 17 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dg 96 (127)
T 3h6n_A 17 DSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEG 96 (127)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTT
T ss_pred CceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCC
Confidence 347899999999999999999985 5543 3344433 2332 43321 48999999999
Q ss_pred CEEEEEecc
Q 004117 726 DKLWVQDSE 734 (773)
Q Consensus 726 ~~l~l~~~~ 734 (773)
++|-|+-..
T Consensus 97 atv~l~~~~ 105 (127)
T 3h6n_A 97 ASLAMSLID 105 (127)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEEcc
Confidence 999998544
No 137
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=88.22 E-value=0.71 Score=42.29 Aligned_cols=61 Identities=20% Similarity=0.160 Sum_probs=42.5
Q ss_pred ceEEEEecCcccHHHHHHHHHHHh----CCCCC----CcEEEe----CCeeeccc-------------cchhhhcCCCCC
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESL----GVVKE----NQILHK----GQRIIDQE-------------CATLADLNIFPG 725 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~----gi~p~----~Q~L~~----~G~~L~~d-------------~~TL~~~~I~~~ 725 (773)
..+.++|-..|||-|+|++|.+.. |+|-. +..|-+ +|+.|.|. -.||++|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 457889999999999999998764 77643 223321 11233211 038899999999
Q ss_pred CEEEEE
Q 004117 726 DKLWVQ 731 (773)
Q Consensus 726 ~~l~l~ 731 (773)
++|-|.
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999886
No 138
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=87.58 E-value=0.85 Score=42.06 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=45.5
Q ss_pred eEEEEecCcccHHHHHHHHHHHh-CCCCCCcEEE--eCCeeeccccchhhhcCCCCCCEE
Q 004117 672 FVNLKVSASTSIYQLKMMIWESL-GVVKENQILH--KGQRIIDQECATLADLNIFPGDKL 728 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~-gi~p~~Q~L~--~~G~~L~~d~~TL~~~~I~~~~~l 728 (773)
.+.-.+..++||.+|..-|.... +.......|+ |-.|.|+++++||+++|+.+..+|
T Consensus 64 rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 64 RLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp EEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 34557788999999999999974 4666677777 567999877899999999995444
No 139
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=80.78 E-value=1.5 Score=40.63 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=30.5
Q ss_pred EEEEecCcccHHHHHHHHHHHhCCCCCCcEEEe
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGVVKENQILHK 705 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~ 705 (773)
.++.|-.++|+.+||.+|.+.+|||+.+|||..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467888999999999999999999999999974
No 140
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=76.61 E-value=4.7 Score=37.00 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=43.0
Q ss_pred EEEec----CcccHHHHHHHHHHHhCCCC-------CCcEEEeCCeee-ccccchhhhcCCCCCCEEEEEecc
Q 004117 674 NLKVS----ASTSIYQLKMMIWESLGVVK-------ENQILHKGQRII-DQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 674 ~l~vs----~~~tv~~lK~~I~e~~gi~p-------~~Q~L~~~G~~L-~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.|.|+ +..|+.+|=..|.+++|..- .+|+|+|.=- + ++-.+||.++||..|+.|.+++.+
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~D-fDDnl~k~L~dLgv~~gsfLtv~DEd 80 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYD-FEDLNDRTLSEINLGNGSIILFSDEE 80 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETT-BCTTTTSBTTTTTCCTTCEEEEEESC
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCC-ccccccCcHHHcCcCCCcEEEEEccc
Confidence 45565 45799999888999988753 2455554331 2 223799999999999999999654
No 141
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=70.56 E-value=6.8 Score=44.96 Aligned_cols=64 Identities=22% Similarity=0.175 Sum_probs=44.8
Q ss_pred ceEEEEecCcccHHHHHHHHHHHh--CCCCCC------cEEEe----CCe-eecccc------------chhhhcCCCCC
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESL--GVVKEN------QILHK----GQR-IIDQEC------------ATLADLNIFPG 725 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~--gi~p~~------Q~L~~----~G~-~L~~d~------------~TL~~~~I~~~ 725 (773)
..+.++|-..|||-|+|++|.+.. |+|-.+ ..|-+ .|+ .|+|.+ .||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 447899999999999999999874 555432 22322 232 243322 49999999999
Q ss_pred CEEEEEecc
Q 004117 726 DKLWVQDSE 734 (773)
Q Consensus 726 ~~l~l~~~~ 734 (773)
++|-|+-..
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999997543
No 142
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=70.07 E-value=6.4 Score=42.49 Aligned_cols=61 Identities=16% Similarity=0.112 Sum_probs=49.9
Q ss_pred CceEEEEecCcccHHHHHHHHHHHhC----CCCCCcEEEe------CCeeeccccchhhhcCCCCCCEEEEE
Q 004117 670 RSFVNLKVSASTSIYQLKMMIWESLG----VVKENQILHK------GQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 670 ~~~~~l~vs~~~tv~~lK~~I~e~~g----i~p~~Q~L~~------~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
+-+.++.+++++||+++-.+|-|++. .++.+=-|+. .|+-| ++.+||+.|++.+|+.|...
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl-~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWL-EAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEEC-CTTSBGGGGTCCTTCEEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEec-cCCCCHHHhCCCCCceeecc
Confidence 34568899999999999999999884 3566667776 46778 57789999999999987776
No 143
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=67.70 E-value=8.9 Score=43.94 Aligned_cols=64 Identities=25% Similarity=0.267 Sum_probs=44.7
Q ss_pred ceEEEEecCcccHHHHHHHHHHHh--CCCC------CCcEEEe----CCe-eecccc------------chhhhcCCCCC
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESL--GVVK------ENQILHK----GQR-IIDQEC------------ATLADLNIFPG 725 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~--gi~p------~~Q~L~~----~G~-~L~~d~------------~TL~~~~I~~~ 725 (773)
..+.++|-..|||-|+|++|.+.. |+|- ++..|-+ +|+ .|+|.+ .||++|+|..|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 457899999999999999999985 5543 2333422 222 232211 38999999999
Q ss_pred CEEEEEecc
Q 004117 726 DKLWVQDSE 734 (773)
Q Consensus 726 ~~l~l~~~~ 734 (773)
++|-|+-..
T Consensus 327 a~v~L~p~~ 335 (627)
T 3ig3_A 327 SLVALVPKQ 335 (627)
T ss_dssp CEEEEEEC-
T ss_pred ceEEEEecc
Confidence 999998544
No 144
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=66.21 E-value=20 Score=30.38 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=33.8
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCC
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ 707 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G 707 (773)
-+++|.|.+..+..+|..+|.++++++++.-.|.|.-
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 6899999999999999999999999998888888743
No 145
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=52.02 E-value=46 Score=26.76 Aligned_cols=50 Identities=26% Similarity=0.242 Sum_probs=38.4
Q ss_pred eEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 672 FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
...+++....||.+|..+ +|+++..-.+..||..+..|. -+.+||.|.+.
T Consensus 15 ~~~~~~~~~~tv~~Ll~~----l~~~~~~v~vavN~~~v~~~~------~L~~gD~V~ii 64 (70)
T 1ryj_A 15 KKILESGAPRRIKDVLGE----LEIPIETVVVKKNGQIVIDEE------EIFDGDIIEVI 64 (70)
T ss_dssp EEEEEESSCCBHHHHHHH----TTCCTTTEEEEETTEECCTTS------BCCTTCEEEEE
T ss_pred ceeEECCCCCcHHHHHHH----hCCCCCCEEEEECCEECCCcc------cCCCCCEEEEE
Confidence 345678888999988877 578877666779998884332 68899998876
No 146
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=50.74 E-value=32 Score=29.18 Aligned_cols=60 Identities=10% Similarity=0.050 Sum_probs=51.1
Q ss_pred EEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEEecc
Q 004117 674 NLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 674 ~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.-.+.=..++..||..++.++||.-..=.++..+.+| +.+++|.+-+|+-.-++.+.+.-
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L-~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQL-DPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEEC-CTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeecccc-CCCccHHHhhcccccEEEEEEEE
Confidence 3345556789999999999999999999999999998 68899999999998887766543
No 147
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.30 E-value=21 Score=30.37 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=48.9
Q ss_pred EEEEecCcccHHHHHHHHHHHhCCCCCCcEEE---eCCeeeccccchhhhcCCCCCCEEEEEec
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGVVKENQILH---KGQRIIDQECATLADLNIFPGDKLWVQDS 733 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~---~~G~~L~~d~~TL~~~~I~~~~~l~l~~~ 733 (773)
..+.||+..++.+|--.|=++..+.|+.=.|. ..+..| |=+++|.||||.+ |..++.
T Consensus 23 tVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~L-dLskSLndlgirE---Lya~d~ 82 (91)
T 2daj_A 23 TIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPL-DLTKSLNDLGLRE---LYAMDV 82 (91)
T ss_dssp EEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBC-CTTSCHHHHTCSE---EEEEEC
T ss_pred eEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCccc-chhcchhhhhhhh---hheecc
Confidence 35799999999999999999999999988886 466788 6789999999998 666643
No 148
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=46.92 E-value=19 Score=38.49 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=35.6
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeee
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRII 710 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L 710 (773)
....+.+.+.+|+..++.+|.+..||++.+|.|.+.|..+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~ 361 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRL 361 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEE
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCC
Confidence 4457788999999999999999999999999999998444
No 149
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=46.33 E-value=14 Score=41.97 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=29.9
Q ss_pred EEEEecCcccHHHHHHHHHHHhCCCCCCcEEE
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGVVKENQILH 704 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~ 704 (773)
..+.|-.++|+.+||.+|.+.+|||+++|||.
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 35789999999999999999999999999996
No 150
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=44.87 E-value=53 Score=27.96 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=41.6
Q ss_pred ceEEEEecCc-ccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSAS-TSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~-~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
+-..+++... .||.+|... +++++..-.+..||+.+. .....+.-|.+||.|-+.
T Consensus 26 NGe~~el~~~~~Tv~dLL~~----L~~~~~~vaVavNg~iV~--~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 26 NGKDVKWKKDTGTIQDLLAS----YQLENKIVIVERNKEIIG--KERYHEVELCDRDVIEIV 81 (87)
T ss_dssp TTEEECCSSSCCBHHHHHHH----TTCTTSCCEEEETTEEEC--GGGTTTSBCCSSSEEEEE
T ss_pred CCEEEECCCCCCcHHHHHHH----hCCCCCCEEEEECCEECC--hhhcCCcCCCCCCEEEEE
Confidence 4456677777 899988776 588877667789998873 234566779999999887
No 151
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=44.43 E-value=27 Score=30.56 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=44.3
Q ss_pred eEEEEecCcccHHHHHHHHHHHhC-------CCCC----CcEEEeCC-eeecc-----ccchhhhcCCCCCCEEEEE
Q 004117 672 FVNLKVSASTSIYQLKMMIWESLG-------VVKE----NQILHKGQ-RIIDQ-----ECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~g-------i~p~----~Q~L~~~G-~~L~~-----d~~TL~~~~I~~~~~l~l~ 731 (773)
.+.|+|+++.|+.+|=..|.+.-- |.-. ...||+.+ .+|.+ =+++|.++|+.+|+.|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 346899999999999999988322 2222 56777776 34521 2578999999999999986
No 152
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=42.42 E-value=32 Score=28.28 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=38.4
Q ss_pred eEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 672 FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
...+++....||.+|= +++|++|..=....||+.+..|. +.+||+|-+.
T Consensus 12 ~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~-------~l~GD~VeIv 60 (74)
T 2l32_A 12 TSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ-------SVEVDRVKVL 60 (74)
T ss_dssp EEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS-------SSCCCCEEEC
T ss_pred ceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH-------CCCCCEEEEE
Confidence 4467899999998655 45999999888889999885454 3469998876
No 153
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=40.11 E-value=23 Score=40.19 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=52.2
Q ss_pred eEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeC------Ceeeccccchhhhc--CCCCCCEEEEEecc
Q 004117 672 FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKG------QRIIDQECATLADL--NIFPGDKLWVQDSE 734 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~------G~~L~~d~~TL~~~--~I~~~~~l~l~~~~ 734 (773)
.=.+-|+.+++|.+|-..|-+..|+||+...++|. -.+|.+-..|+.++ +|..||+|......
T Consensus 148 ~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~ 218 (530)
T 2ylm_A 148 CGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDD 218 (530)
T ss_dssp EEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEECC
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEecC
Confidence 33567899999999999999999999998877765 24464357799999 99999999998654
No 154
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=35.74 E-value=26 Score=41.08 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=38.6
Q ss_pred EEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhc
Q 004117 673 VNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADL 720 (773)
Q Consensus 673 ~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~ 720 (773)
..+.+++++|+.+|+..|++..||++.+|.|++.+..-.+......++
T Consensus 324 ~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 324 HTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp CEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 368999999999999999999999999999998664333455555554
No 155
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=34.23 E-value=76 Score=25.86 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=40.4
Q ss_pred EEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 674 NLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 674 ~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
.+++ ...||.+|-.. +|+++..--+..||..+ .....++.-+.+||.|-++
T Consensus 9 ~~e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iV--pr~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 9 QREV-QSASVAALMTE----LDCTGGHFAVALNYDVV--PRGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp EECC-CCSBHHHHHHH----TTCCSSSCEEEESSSEE--CHHHHTTCBCCTTCEEEEE
T ss_pred EEEc-CCCcHHHHHHH----cCCCCCcEEEEECCEEC--ChHHcCcccCCCCCEEEEE
Confidence 4456 66899877665 89998877888999988 3346777889999999988
No 156
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=32.26 E-value=72 Score=25.12 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=38.9
Q ss_pred EEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 674 NLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 674 ~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
.+++....||.+|...+ ++++..-.+..||+-+. .....+.-+.+||.|.+.
T Consensus 9 ~~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~--~~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL----DQRQAGAALAINQQIVP--REQWAQHIVQDGDQILLF 60 (66)
T ss_dssp EECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEEC--HHHHTTCCCCTTEEECEE
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECC--chhcCCcCCCCCCEEEEE
Confidence 45677788999888774 78776667789998773 224556678999998876
No 157
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=30.84 E-value=1.7e+02 Score=24.14 Aligned_cols=55 Identities=9% Similarity=0.032 Sum_probs=39.6
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhC-C----CC------CCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLG-V----VK------ENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~g-i----~p------~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
++..+++....||.+|..++.+... + -. ..-++..||+... . +.-|.+||.|.+.
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~-~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAA-L-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECC-T-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECC-C-----CcccCCCCEEEEE
Confidence 5678888888999999999988762 1 00 1136678998773 2 4458899999876
No 158
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=29.59 E-value=1.9e+02 Score=24.45 Aligned_cols=60 Identities=13% Similarity=0.012 Sum_probs=47.3
Q ss_pred eEEEEecCcccHHHHHHHHHHH-hCCCC----CCcEEEeCCee--eccccchhhhcCCCCCCEEEEEe
Q 004117 672 FVNLKVSASTSIYQLKMMIWES-LGVVK----ENQILHKGQRI--IDQECATLADLNIFPGDKLWVQD 732 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~-~gi~p----~~Q~L~~~G~~--L~~d~~TL~~~~I~~~~~l~l~~ 732 (773)
.+-+.|+..+|+.++-+++..- .|.-. .--+...+|.. | ..+.|+++.||.|=+.|.+.-
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~-Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELF-PRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBC-CTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccC-CCCCEeeccCCCcceEEEEEE
Confidence 4567899999999999988764 35432 23467788976 7 788999999999999998763
No 159
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=29.42 E-value=2.3e+02 Score=25.85 Aligned_cols=47 Identities=9% Similarity=0.152 Sum_probs=37.1
Q ss_pred EEEecCcccHHHHHHHHHHHhCCCCCCcEEE-eCCeeeccccchhhhc
Q 004117 674 NLKVSASTSIYQLKMMIWESLGVVKENQILH-KGQRIIDQECATLADL 720 (773)
Q Consensus 674 ~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~-~~G~~L~~d~~TL~~~ 720 (773)
.+.|.+++||.++..-|..+.+++|.+...+ |.+..|-.-++||+++
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHH
Confidence 4679999999999999999999999877655 6555564456677665
No 160
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=27.72 E-value=97 Score=24.23 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=37.3
Q ss_pred EEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 674 NLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 674 ~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
.+++ ...||.+|... +++++..-.+..||+.+. ...-.+.-+.+||.|.+.
T Consensus 8 ~~~~-~~~tv~~ll~~----l~~~~~~v~vavN~~~v~--~~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 8 PRPL-EGKTLKEVLEE----MGVELKGVAVLLNEEAFL--GLEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp EECC-TTCCHHHHHHH----HTBCGGGEEEEETTEEEE--GGGCCCCCCCTTCEEEEE
T ss_pred EEEc-CCCcHHHHHHH----cCCCCCcEEEEECCEECC--ccccCCcCCCCCCEEEEE
Confidence 4456 67899988777 477776667789998773 223445678999999887
No 161
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=27.23 E-value=85 Score=26.92 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=34.6
Q ss_pred EEEecCcccHHHHHHHHHHHhCCCCCCc-EEEeCCeeeccccchhhh
Q 004117 674 NLKVSASTSIYQLKMMIWESLGVVKENQ-ILHKGQRIIDQECATLAD 719 (773)
Q Consensus 674 ~l~vs~~~tv~~lK~~I~e~~gi~p~~Q-~L~~~G~~L~~d~~TL~~ 719 (773)
.+.|+++.|+.++..-|..+.++.|.+. -|+.++.-+-.-++|+++
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~ 69 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGT 69 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHH
Confidence 4789999999999999999999999876 445566533233456654
No 162
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=26.38 E-value=42 Score=27.54 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=36.9
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
+...+++....||.+|..+ +++++..-.+..||+.+..| .-|.+||.|-+.
T Consensus 21 n~~~~~~~~~~Tv~dLl~~----L~~~~~~v~VavNg~~v~~~------~~L~dGD~V~i~ 71 (77)
T 1rws_A 21 IEKEIEWREGMKVRDILRA----VGFNTESAIAKVNGKVVLED------DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCCCCSSCCHHHHHHT----TTCSSCSSCEEETTEEECSS------SCCCSSCCCBCS
T ss_pred CCEEEECCCCCcHHHHHHH----hCCCCcCEEEEECCEECCCC------CCcCCCCEEEEE
Confidence 4455677778999988776 57887666788999888432 467888877554
No 163
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=25.86 E-value=79 Score=26.15 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=40.6
Q ss_pred EEEec--CcccHHHHHHHHHHHhCCC-CCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 674 NLKVS--ASTSIYQLKMMIWESLGVV-KENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 674 ~l~vs--~~~tv~~lK~~I~e~~gi~-p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
.+++. ...||.+|-.. +|++ +.---+-.||..+. ....++.-+.+||.|-++
T Consensus 9 ~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVp--r~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 9 PSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLE--REAFDATTVKDGDAVEFL 63 (78)
T ss_dssp EEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECC--TTHHHHCEECSSBCEEEC
T ss_pred EEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECC--hHHcCcccCCCCCEEEEE
Confidence 45676 77999987665 7898 77667889999883 346777888999999887
No 164
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=23.77 E-value=2e+02 Score=24.42 Aligned_cols=55 Identities=13% Similarity=0.069 Sum_probs=39.0
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhC-C----------CCCCcEEEeCCeeeccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLG-V----------VKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~g-i----------~p~~Q~L~~~G~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
+...+++....||.+|...+..... + ....-.+..||+... . +.-|.+||.|.+.
T Consensus 27 ~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~-~-----~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 27 DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS-W-----DEELKDGDVVGVF 92 (98)
T ss_dssp SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC-T-----TCBCCTTCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC-C-----CCCCCCCCEEEEE
Confidence 4567888788999999999987741 1 112235677887663 2 5568999998876
No 165
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=22.52 E-value=1.9e+02 Score=26.02 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=50.0
Q ss_pred ceEEEEecCcccHHHHHHHHH-HHhCCCCCCc-------EEEeCCeeeccc-cchhhhcCCCCCCEEEEEecc
Q 004117 671 SFVNLKVSASTSIYQLKMMIW-ESLGVVKENQ-------ILHKGQRIIDQE-CATLADLNIFPGDKLWVQDSE 734 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~-e~~gi~p~~Q-------~L~~~G~~L~~d-~~TL~~~~I~~~~~l~l~~~~ 734 (773)
.-.++-|.++|+..+|=.++. ..+|..|+-- .-..+|+..+-| ++||++.||.-.|.|.++.-+
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TPg 110 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTPG 110 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECTT
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCCC
Confidence 456889999999999876655 4568877653 235689988544 899999999999999999433
No 166
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=22.26 E-value=3e+02 Score=23.20 Aligned_cols=59 Identities=8% Similarity=0.069 Sum_probs=44.7
Q ss_pred eEEEEecCcccHHHHHHHHHHH-hCC--CCC---CcEEEeCC--eeeccccchhhhcCCCCCCEEEEE
Q 004117 672 FVNLKVSASTSIYQLKMMIWES-LGV--VKE---NQILHKGQ--RIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 672 ~~~l~vs~~~tv~~lK~~I~e~-~gi--~p~---~Q~L~~~G--~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
.+-+-|+..+|+.++=+++..- .|. +|. --+..++| +.| ..+.|+++.||.|=+.|.+.
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~-pr~~tvae~gl~P~e~vev~ 80 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLF-PRGMIVSDAGLRPTETLDII 80 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEE-CTTCBGGGSCCCTTCEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCC-CCCCEeeccCCCCceEEEEE
Confidence 4567899999999998888654 343 222 23556777 667 68899999999999998876
No 167
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=21.75 E-value=1.2e+02 Score=25.80 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=27.6
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILH 704 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L~ 704 (773)
..++|.|.++.++.+||.+|.++..+. ++.|+
T Consensus 22 DIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~ 53 (85)
T 1ip9_A 22 DIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQ 53 (85)
T ss_dssp CCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhccc--ceEEE
Confidence 579999999999999999999999994 44444
No 168
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=21.62 E-value=80 Score=31.40 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=26.6
Q ss_pred EEeecCCCCCceEEEEEEcCCCCcEEEEcCcceeeeCC
Q 004117 37 LIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 74 (773)
Q Consensus 37 liH~G~sa~sGHY~a~ik~~~~~~W~~FdD~~V~~~~~ 74 (773)
++-.|+ .++|||+.+... .+ +.+|-..+.++..
T Consensus 164 ~vF~G~-~~~GHY~~~~~~--~~--~~vDG~~~~~~~~ 196 (211)
T 3mp2_A 164 AVYTGT-TQNGHYMVDDIE--HG--YCVDGMGIKPLKK 196 (211)
T ss_dssp EEEESC-TTTCEEEEEETT--TT--EEEETTEEECCCC
T ss_pred EEEEcC-CCCceEEEEecc--cc--eEEeCCceeEccc
Confidence 344888 799999999765 44 8999999999973
No 169
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=21.38 E-value=64 Score=28.68 Aligned_cols=60 Identities=20% Similarity=0.193 Sum_probs=40.2
Q ss_pred ceEEEEecCcccHHHHHHHHHHHhCCCCCCcEE------Ee-----CC--eeeccccchhhhcCCCCCCEEEEE
Q 004117 671 SFVNLKVSASTSIYQLKMMIWESLGVVKENQIL------HK-----GQ--RIIDQECATLADLNIFPGDKLWVQ 731 (773)
Q Consensus 671 ~~~~l~vs~~~tv~~lK~~I~e~~gi~p~~Q~L------~~-----~G--~~L~~d~~TL~~~~I~~~~~l~l~ 731 (773)
=-+.|+|+.+.||.+||.++++...--|---+| +| .| .+|.|+++-|-++... =..|.|+
T Consensus 30 i~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~piLklv 102 (108)
T 2v1y_A 30 MIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPFLKVI 102 (108)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSEEEEE
T ss_pred EEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceEEEEE
Confidence 357899999999999999999995444322222 11 13 3476777888777776 3455555
No 170
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=20.75 E-value=1.1e+02 Score=27.15 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=34.8
Q ss_pred EEEecCcccHHHHHHHHHHHhCCCCCCc-EEEeCCeeeccccchhhhc
Q 004117 674 NLKVSASTSIYQLKMMIWESLGVVKENQ-ILHKGQRIIDQECATLADL 720 (773)
Q Consensus 674 ~l~vs~~~tv~~lK~~I~e~~gi~p~~Q-~L~~~G~~L~~d~~TL~~~ 720 (773)
.+.|..++||.++..-|..+.++.|.+. -|+.+|. +-.-++||+++
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~-~p~~~~~m~~L 93 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNT-IPPTSATMGQL 93 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTB-CCCTTSBHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCE-ecCccChHHHH
Confidence 4678889999999999999999999876 4445665 43345667654
Done!