Query 004118
Match_columns 773
No_of_seqs 372 out of 1113
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 17:52:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02638 cellulose synthase A 100.0 4E-243 8E-248 2085.0 55.4 771 1-773 1-773 (1079)
2 PLN02400 cellulose synthase 100.0 2E-242 5E-247 2079.3 52.1 748 5-773 24-778 (1085)
3 PLN02436 cellulose synthase A 100.0 9E-239 2E-243 2043.1 54.6 754 5-773 24-789 (1094)
4 PLN02915 cellulose synthase A 100.0 3E-227 7E-232 1947.8 49.6 699 13-773 11-737 (1044)
5 PLN02189 cellulose synthase 100.0 1E-221 3E-226 1900.0 50.0 705 6-773 23-734 (1040)
6 PLN02195 cellulose synthase A 100.0 2E-210 4E-215 1800.4 48.7 667 13-773 2-669 (977)
7 PLN02248 cellulose synthase-li 100.0 9E-180 2E-184 1554.2 44.9 637 9-773 116-832 (1135)
8 PF03552 Cellulose_synt: Cellu 100.0 1E-143 2E-148 1221.7 28.0 419 351-773 1-419 (720)
9 PLN02190 cellulose synthase-li 100.0 4E-142 9E-147 1211.2 34.9 446 252-773 6-455 (756)
10 PLN02893 Cellulose synthase-li 100.0 3E-133 6E-138 1142.3 37.6 427 252-773 9-442 (734)
11 PF14569 zf-UDP: Zinc-binding 100.0 1.7E-44 3.7E-49 311.0 4.5 80 9-89 1-80 (80)
12 TIGR03030 CelA cellulose synth 100.0 9.7E-35 2.1E-39 336.8 23.7 256 272-644 57-328 (713)
13 PRK11498 bcsA cellulose syntha 100.0 6.6E-34 1.4E-38 333.7 22.7 236 274-644 189-439 (852)
14 cd04191 Glucan_BSP_ModH Glucan 99.9 8.6E-22 1.9E-26 203.7 17.3 113 516-639 67-184 (254)
15 PRK05454 glucosyltransferase M 99.9 2.3E-20 4.9E-25 216.8 23.3 250 270-639 40-309 (691)
16 COG1215 Glycosyltransferases, 99.8 7E-18 1.5E-22 181.1 16.9 176 348-645 53-236 (439)
17 cd06421 CESA_CelA_like CESA_Ce 99.7 9.4E-16 2E-20 149.7 15.4 168 349-639 1-173 (234)
18 PRK14583 hmsR N-glycosyltransf 99.7 2.1E-15 4.7E-20 166.3 19.7 172 347-644 73-251 (444)
19 cd06437 CESA_CaSu_A2 Cellulose 99.6 7.6E-15 1.7E-19 145.4 17.3 175 349-643 1-182 (232)
20 PRK11204 N-glycosyltransferase 99.6 8.6E-14 1.9E-18 150.9 18.8 171 346-644 51-230 (420)
21 cd06427 CESA_like_2 CESA_like_ 99.6 8.5E-14 1.8E-18 139.5 16.4 174 349-643 1-181 (241)
22 TIGR03111 glyc2_xrt_Gpos1 puta 99.6 1.5E-13 3.3E-18 151.8 19.7 174 345-644 45-236 (439)
23 cd06435 CESA_NdvC_like NdvC_li 99.5 4.2E-13 9E-18 132.5 17.1 110 518-639 58-171 (236)
24 cd06436 GlcNAc-1-P_transferase 99.5 2.1E-13 4.5E-18 132.9 14.5 115 518-639 52-176 (191)
25 PF13641 Glyco_tranf_2_3: Glyc 99.5 1.2E-14 2.5E-19 142.5 3.2 172 349-643 1-179 (228)
26 PRK14716 bacteriophage N4 adso 99.5 1.1E-12 2.4E-17 148.5 18.8 171 347-639 64-245 (504)
27 TIGR03472 HpnI hopanoid biosyn 99.4 6.1E-12 1.3E-16 136.1 17.6 172 347-643 39-220 (373)
28 cd06438 EpsO_like EpsO protein 99.4 3.5E-12 7.6E-17 122.6 13.8 102 532-639 62-168 (183)
29 PRK11234 nfrB bacteriophage N4 99.4 5.6E-12 1.2E-16 148.1 16.1 168 346-635 60-239 (727)
30 cd04192 GT_2_like_e Subfamily 99.3 1.6E-11 3.6E-16 119.0 13.5 170 353-643 1-175 (229)
31 cd06439 CESA_like_1 CESA_like_ 99.3 1.3E-10 2.7E-15 116.0 17.0 172 345-643 25-198 (251)
32 cd06434 GT2_HAS Hyaluronan syn 99.3 9.3E-11 2E-15 115.3 15.1 98 532-639 63-165 (235)
33 cd02520 Glucosylceramide_synth 99.3 5.8E-11 1.3E-15 115.6 12.8 137 349-639 1-137 (196)
34 PRK15489 nfrB bacteriophage N4 99.1 9.1E-10 2E-14 129.1 18.2 101 532-639 140-250 (703)
35 cd04190 Chitin_synth_C C-termi 99.1 1.4E-10 3.1E-15 117.8 9.0 89 548-641 71-164 (244)
36 TIGR03469 HonB hopene-associat 99.1 2.1E-09 4.6E-14 117.0 17.8 136 345-594 36-172 (384)
37 cd04184 GT2_RfbC_Mx_like Myxoc 99.0 3.5E-09 7.6E-14 101.6 12.9 165 349-643 1-169 (202)
38 PF14570 zf-RING_4: RING/Ubox 99.0 1.7E-10 3.6E-15 93.1 2.9 48 20-70 1-48 (48)
39 cd04196 GT_2_like_d Subfamily 99.0 2.3E-09 4.9E-14 103.1 11.2 100 532-641 65-167 (214)
40 cd06423 CESA_like CESA_like is 99.0 6E-09 1.3E-13 93.9 12.8 107 518-639 55-167 (180)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.0 1E-08 2.2E-13 98.6 15.2 102 518-639 57-163 (201)
42 PF00535 Glycos_transf_2: Glyc 98.9 9.8E-10 2.1E-14 99.5 4.9 110 518-639 55-166 (169)
43 cd02525 Succinoglycan_BP_ExoA 98.9 1.9E-08 4E-13 99.0 12.9 117 351-592 2-118 (249)
44 PLN02726 dolichyl-phosphate be 98.8 1.1E-07 2.4E-12 96.1 16.9 109 518-641 70-181 (243)
45 cd04179 DPM_DPG-synthase_like 98.8 9E-08 2E-12 90.5 12.6 110 518-641 56-166 (185)
46 cd06442 DPM1_like DPM1_like re 98.8 1.8E-07 3.9E-12 91.3 15.0 99 533-641 65-166 (224)
47 cd06420 GT2_Chondriotin_Pol_N 98.7 1.4E-07 3E-12 89.1 13.1 78 533-643 66-146 (182)
48 cd06433 GT_2_WfgS_like WfgS an 98.7 1.1E-07 2.5E-12 89.5 11.9 93 533-639 62-155 (202)
49 cd02522 GT_2_like_a GT_2_like_ 98.6 4.9E-07 1.1E-11 88.1 13.7 95 533-643 59-156 (221)
50 cd04186 GT_2_like_c Subfamily 98.6 4.1E-07 8.8E-12 83.4 11.8 65 532-639 60-125 (166)
51 cd04187 DPM1_like_bac Bacteria 98.6 8.7E-07 1.9E-11 84.5 13.9 103 518-639 57-160 (181)
52 cd02510 pp-GalNAc-T pp-GalNAc- 98.6 4.7E-07 1E-11 94.4 12.6 109 353-578 2-110 (299)
53 cd04185 GT_2_like_b Subfamily 98.5 1.1E-06 2.4E-11 85.0 12.6 55 533-594 63-117 (202)
54 cd04188 DPG_synthase DPG_synth 98.5 2.1E-06 4.6E-11 84.2 13.4 53 533-594 69-121 (211)
55 cd06913 beta3GnTL1_like Beta 1 98.5 2.9E-06 6.2E-11 83.7 13.9 43 353-400 1-43 (219)
56 PTZ00260 dolichyl-phosphate be 98.4 9.6E-06 2.1E-10 87.7 18.6 41 533-578 149-189 (333)
57 cd02526 GT2_RfbF_like RfbF is 98.4 1.7E-06 3.8E-11 85.3 9.8 115 518-644 49-172 (237)
58 PRK13915 putative glucosyl-3-p 98.4 6.4E-06 1.4E-10 88.3 14.7 50 533-590 102-152 (306)
59 PRK10073 putative glycosyl tra 98.3 6.1E-06 1.3E-10 88.9 13.9 47 347-399 4-50 (328)
60 PRK10018 putative glycosyl tra 98.3 7E-06 1.5E-10 87.0 13.7 110 347-578 3-112 (279)
61 cd00761 Glyco_tranf_GTA_type G 98.1 5.3E-05 1.1E-09 66.7 11.7 52 531-591 62-114 (156)
62 COG2943 MdoH Membrane glycosyl 97.8 0.0012 2.6E-08 75.8 19.6 113 518-643 214-336 (736)
63 PF13506 Glyco_transf_21: Glyc 97.8 7E-05 1.5E-09 74.3 7.8 100 530-639 14-114 (175)
64 PRK10063 putative glycosyl tra 97.7 0.00027 5.8E-09 73.3 11.9 48 349-400 1-49 (248)
65 PF13632 Glyco_trans_2_3: Glyc 97.7 3.7E-05 8.1E-10 74.5 4.9 83 553-642 1-91 (193)
66 TIGR01556 rhamnosyltran L-rham 97.7 0.00031 6.7E-09 72.6 11.4 111 518-639 47-161 (281)
67 PRK10714 undecaprenyl phosphat 97.6 0.00068 1.5E-08 73.2 13.4 40 533-577 77-116 (325)
68 PF10111 Glyco_tranf_2_2: Glyc 97.6 0.00083 1.8E-08 70.6 13.6 108 532-645 74-190 (281)
69 COG0463 WcaA Glycosyltransfera 97.4 0.0013 2.9E-08 58.0 10.4 47 348-400 2-48 (291)
70 cd02511 Beta4Glucosyltransfera 97.2 0.0034 7.4E-08 63.4 11.4 42 533-579 58-99 (229)
71 COG5175 MOT2 Transcriptional r 96.6 0.00096 2.1E-08 72.8 2.0 48 19-69 16-63 (480)
72 cd02514 GT13_GLCNAC-TI GT13_GL 96.6 0.03 6.5E-07 61.8 13.2 90 530-643 82-176 (334)
73 COG1216 Predicted glycosyltran 96.5 0.033 7.2E-07 59.2 12.6 123 348-596 2-126 (305)
74 TIGR00570 cdk7 CDK-activating 95.7 0.011 2.4E-07 64.4 4.7 59 16-76 2-60 (309)
75 PF14446 Prok-RING_1: Prokaryo 94.3 0.032 6.9E-07 46.8 2.5 46 16-69 4-51 (54)
76 KOG2978 Dolichol-phosphate man 89.6 2 4.4E-05 44.9 9.2 54 516-579 63-116 (238)
77 cd00162 RING RING-finger (Real 89.5 0.39 8.4E-06 35.6 3.1 44 19-68 1-44 (45)
78 PF03142 Chitin_synth_2: Chiti 88.4 13 0.00027 44.1 15.7 44 347-393 23-66 (527)
79 PF05290 Baculo_IE-1: Baculovi 86.7 0.43 9.4E-06 46.8 2.2 52 18-73 81-135 (140)
80 KOG2977 Glycosyltransferase [G 86.4 24 0.00053 39.1 15.2 60 350-420 68-130 (323)
81 smart00504 Ubox Modified RING 79.4 2.3 4.9E-05 34.9 3.4 43 19-69 3-45 (63)
82 PRK14559 putative protein seri 78.5 1.1 2.3E-05 53.9 1.7 32 39-71 18-53 (645)
83 PHA02929 N1R/p28-like protein; 75.1 3.7 8E-05 43.9 4.4 55 15-70 172-227 (238)
84 KOG3800 Predicted E3 ubiquitin 73.7 2.6 5.7E-05 46.1 2.9 53 18-72 1-53 (300)
85 PF13639 zf-RING_2: Ring finge 72.9 2.7 5.9E-05 32.7 2.1 43 19-66 2-44 (44)
86 PLN03208 E3 ubiquitin-protein 71.8 5.5 0.00012 41.4 4.6 63 1-70 1-79 (193)
87 smart00659 RPOLCX RNA polymera 71.8 2.6 5.5E-05 34.0 1.8 27 18-46 3-29 (44)
88 PF03966 Trm112p: Trm112p-like 71.2 0.95 2.1E-05 38.9 -0.9 25 48-72 42-66 (68)
89 KOG2547 Ceramide glucosyltrans 70.8 1.4E+02 0.0031 34.5 15.4 99 530-639 154-257 (431)
90 PF14447 Prok-RING_4: Prokaryo 70.8 2 4.3E-05 36.5 0.9 47 16-72 6-52 (55)
91 PF03604 DNA_RNApol_7kD: DNA d 70.0 3.4 7.3E-05 31.4 1.9 26 19-46 2-27 (32)
92 KOG0823 Predicted E3 ubiquitin 67.5 3.6 7.8E-05 43.7 2.3 46 17-70 47-95 (230)
93 PF02318 FYVE_2: FYVE-type zin 67.0 1.2 2.6E-05 42.1 -1.2 48 15-65 52-100 (118)
94 PF13712 Glyco_tranf_2_5: Glyc 66.6 20 0.00044 37.1 7.5 44 532-579 40-84 (217)
95 smart00184 RING Ring finger. E 65.9 6.1 0.00013 28.0 2.6 39 20-65 1-39 (39)
96 KOG3737 Predicted polypeptide 65.3 22 0.00047 41.0 7.8 45 345-392 151-195 (603)
97 KOG2068 MOT2 transcription fac 65.2 5.1 0.00011 44.6 2.9 52 17-72 249-300 (327)
98 PHA02862 5L protein; Provision 64.3 4.1 8.9E-05 40.8 1.8 49 17-71 2-54 (156)
99 KOG0006 E3 ubiquitin-protein l 62.4 6.4 0.00014 43.8 3.0 64 12-76 310-414 (446)
100 PHA02825 LAP/PHD finger-like p 62.0 6.5 0.00014 39.9 2.8 51 16-72 7-61 (162)
101 KOG2932 E3 ubiquitin ligase in 60.5 5.8 0.00013 44.0 2.3 44 30-73 84-137 (389)
102 PRK00420 hypothetical protein; 59.9 3.9 8.6E-05 39.1 0.8 29 37-71 24-52 (112)
103 smart00249 PHD PHD zinc finger 58.1 7.3 0.00016 29.2 1.9 43 19-65 1-47 (47)
104 PF14471 DUF4428: Domain of un 57.8 5.8 0.00013 32.9 1.4 28 19-52 1-28 (51)
105 COG5114 Histone acetyltransfer 55.0 4.2 9.1E-05 45.1 0.2 36 19-58 7-43 (432)
106 PF00097 zf-C3HC4: Zinc finger 54.8 9.9 0.00021 28.8 2.1 40 20-65 1-41 (41)
107 PF13920 zf-C3HC4_3: Zinc fing 54.3 13 0.00028 29.8 2.8 46 18-71 3-49 (50)
108 PF13923 zf-C3HC4_2: Zinc fing 54.2 12 0.00027 28.5 2.6 39 20-65 1-39 (39)
109 smart00291 ZnF_ZZ Zinc-binding 52.6 14 0.0003 29.4 2.7 38 16-58 3-41 (44)
110 PF07282 OrfB_Zn_ribbon: Putat 51.6 11 0.00024 31.9 2.1 33 16-49 27-59 (69)
111 PRK00398 rpoP DNA-directed RNA 51.4 10 0.00022 30.2 1.8 28 18-46 4-31 (46)
112 PRK15103 paraquat-inducible me 50.5 13 0.00027 42.7 3.0 30 34-72 219-248 (419)
113 cd02249 ZZ Zinc finger, ZZ typ 49.4 14 0.00031 29.4 2.4 31 19-54 2-33 (46)
114 TIGR00155 pqiA_fam integral me 48.2 11 0.00024 42.9 2.1 30 35-72 214-243 (403)
115 cd02335 ZZ_ADA2 Zinc finger, Z 47.8 16 0.00035 29.7 2.5 30 19-52 2-32 (49)
116 PRK04023 DNA polymerase II lar 47.5 13 0.00028 46.9 2.6 45 15-70 624-674 (1121)
117 PRK07220 DNA topoisomerase I; 47.4 10 0.00023 46.3 1.9 48 18-67 590-643 (740)
118 PF07649 C1_3: C1-like domain; 44.6 14 0.0003 27.0 1.5 28 19-50 2-29 (30)
119 PF13704 Glyco_tranf_2_4: Glyc 44.5 1.6E+02 0.0035 25.8 8.5 28 534-564 58-85 (97)
120 KOG0457 Histone acetyltransfer 44.5 9.5 0.00021 43.9 0.9 49 18-73 15-64 (438)
121 PF13896 Glyco_transf_49: Glyc 44.1 26 0.00057 38.5 4.1 41 549-590 126-166 (317)
122 COG0551 TopA Zn-finger domain 43.7 16 0.00035 35.2 2.2 50 14-67 14-68 (140)
123 PRK03982 heat shock protein Ht 43.5 1.1E+02 0.0024 33.1 8.6 42 314-356 50-91 (288)
124 KOG2068 MOT2 transcription fac 43.3 10 0.00022 42.4 0.8 30 43-72 1-32 (327)
125 PHA02926 zinc finger-like prot 41.2 31 0.00067 37.1 3.9 62 14-75 167-235 (242)
126 TIGR02443 conserved hypothetic 40.2 19 0.00041 31.2 1.8 31 15-45 7-40 (59)
127 cd00350 rubredoxin_like Rubred 40.2 11 0.00024 28.3 0.4 19 52-70 10-28 (33)
128 PF14634 zf-RING_5: zinc-RING 38.5 34 0.00073 26.9 2.9 43 20-67 2-44 (44)
129 PF00628 PHD: PHD-finger; Int 37.6 26 0.00057 27.8 2.2 45 19-67 1-50 (51)
130 PF09484 Cas_TM1802: CRISPR-as 37.1 18 0.00039 42.9 1.6 41 14-54 195-251 (593)
131 PRK14503 mannosyl-3-phosphogly 36.2 73 0.0016 36.5 6.0 41 531-574 142-182 (393)
132 PF11077 DUF2616: Protein of u 36.2 12 0.00025 38.6 -0.1 26 20-49 55-81 (173)
133 PRK07219 DNA topoisomerase I; 36.1 21 0.00045 44.2 2.1 53 17-72 688-746 (822)
134 KOG3736 Polypeptide N-acetylga 36.1 51 0.0011 39.6 5.1 49 345-396 138-186 (578)
135 COG4739 Uncharacterized protei 36.0 19 0.00042 36.4 1.4 45 26-70 77-121 (182)
136 PF06906 DUF1272: Protein of u 35.7 40 0.00088 29.0 3.0 48 18-71 6-53 (57)
137 PRK12380 hydrogenase nickel in 35.4 12 0.00025 35.6 -0.2 26 37-69 71-96 (113)
138 PRK11827 hypothetical protein; 35.2 26 0.00056 30.3 1.9 33 45-77 12-44 (60)
139 PF08274 PhnA_Zn_Ribbon: PhnA 35.1 16 0.00034 27.6 0.5 25 18-44 3-27 (30)
140 PRK14973 DNA topoisomerase I; 34.4 27 0.00059 44.1 2.6 49 17-68 588-644 (936)
141 PRK12495 hypothetical protein; 33.2 19 0.00041 38.4 0.9 30 35-71 41-70 (226)
142 PRK11595 DNA utilization prote 32.5 30 0.00065 36.1 2.2 39 17-68 5-43 (227)
143 PRK14890 putative Zn-ribbon RN 32.3 59 0.0013 28.2 3.5 50 16-67 6-56 (59)
144 TIGR00599 rad18 DNA repair pro 32.1 34 0.00074 39.3 2.7 51 12-70 20-71 (397)
145 KOG3738 Predicted polypeptide 32.1 63 0.0014 37.6 4.7 50 346-398 121-170 (559)
146 cd02336 ZZ_RSC8 Zinc finger, Z 32.1 37 0.00081 27.7 2.2 33 19-56 2-35 (45)
147 PF11238 DUF3039: Protein of u 31.7 15 0.00033 31.6 -0.1 13 59-71 44-56 (58)
148 COG1996 RPC10 DNA-directed RNA 31.4 24 0.00052 29.5 1.0 29 17-46 6-34 (49)
149 TIGR02460 osmo_MPGsynth mannos 31.1 1.9E+02 0.0041 33.2 8.1 41 531-574 141-181 (381)
150 PF11781 RRN7: RNA polymerase 30.7 28 0.0006 27.1 1.2 27 16-44 5-33 (36)
151 cd00730 rubredoxin Rubredoxin; 30.2 16 0.00035 30.3 -0.2 8 61-68 36-43 (50)
152 PF07754 DUF1610: Domain of un 30.0 43 0.00094 24.2 2.0 24 20-44 1-24 (24)
153 TIGR01206 lysW lysine biosynth 29.7 38 0.00083 28.7 2.0 25 18-43 3-29 (54)
154 PF02411 MerT: MerT mercuric t 29.5 1.8E+02 0.0038 28.2 6.6 53 268-320 47-115 (116)
155 PF13248 zf-ribbon_3: zinc-rib 29.3 16 0.00035 26.1 -0.3 15 54-68 11-25 (26)
156 PRK14873 primosome assembly pr 28.3 40 0.00087 41.0 2.6 11 59-69 422-432 (665)
157 KOG0311 Predicted E3 ubiquitin 28.2 16 0.00034 41.3 -0.7 45 19-69 45-89 (381)
158 PF12773 DZR: Double zinc ribb 27.9 41 0.00089 26.8 1.8 12 17-28 12-23 (50)
159 KOG2824 Glutaredoxin-related p 27.6 38 0.00083 37.2 2.0 22 14-43 226-247 (281)
160 PF13240 zinc_ribbon_2: zinc-r 27.4 18 0.00038 25.6 -0.3 13 56-68 10-22 (23)
161 PTZ00293 thymidine kinase; Pro 27.3 29 0.00062 36.6 1.0 35 18-52 138-177 (211)
162 PRK09382 ispDF bifunctional 2- 27.2 1.5E+02 0.0031 33.8 6.6 56 536-595 85-159 (378)
163 PRK06319 DNA topoisomerase I/S 27.2 39 0.00085 42.2 2.3 57 15-74 590-660 (860)
164 PF09526 DUF2387: Probable met 26.8 42 0.0009 29.9 1.8 31 15-45 6-39 (71)
165 PRK08359 transcription factor; 26.8 22 0.00048 36.5 0.1 30 18-55 7-42 (176)
166 PRK13751 putative mercuric tra 26.6 1.9E+02 0.0042 28.1 6.4 52 267-318 46-113 (116)
167 KOG2177 Predicted E3 ubiquitin 26.6 34 0.00073 34.1 1.4 44 16-67 12-55 (386)
168 COG0551 TopA Zn-finger domain 26.3 28 0.0006 33.6 0.7 52 15-70 58-112 (140)
169 COG4391 Uncharacterized protei 26.3 26 0.00056 30.6 0.4 17 55-71 44-60 (62)
170 TIGR00595 priA primosomal prot 26.2 32 0.0007 40.2 1.3 49 30-78 206-259 (505)
171 TIGR00155 pqiA_fam integral me 26.1 47 0.001 38.0 2.6 34 35-72 12-46 (403)
172 cd00065 FYVE FYVE domain; Zinc 25.8 36 0.00078 27.5 1.2 38 17-57 2-39 (57)
173 PF00643 zf-B_box: B-box zinc 25.7 51 0.0011 25.2 1.9 31 17-54 3-33 (42)
174 PF04641 Rtf2: Rtf2 RING-finge 25.6 59 0.0013 34.8 3.0 49 16-70 112-161 (260)
175 PRK00564 hypA hydrogenase nick 25.4 25 0.00054 33.6 0.2 28 37-71 72-100 (117)
176 COG2888 Predicted Zn-ribbon RN 25.1 66 0.0014 28.1 2.6 48 17-66 9-57 (61)
177 PRK10220 hypothetical protein; 24.6 56 0.0012 31.5 2.3 25 45-70 7-31 (111)
178 PRK03681 hypA hydrogenase nick 24.2 24 0.00052 33.5 -0.2 27 37-70 71-98 (114)
179 TIGR00686 phnA alkylphosphonat 24.1 50 0.0011 31.8 1.9 25 45-70 6-30 (109)
180 TIGR02556 cas_TM1802 CRISPR-as 24.0 48 0.001 39.6 2.2 41 17-58 170-222 (555)
181 cd03031 GRX_GRX_like Glutaredo 23.8 40 0.00087 33.5 1.3 43 16-67 98-141 (147)
182 PF01580 FtsK_SpoIIIE: FtsK/Sp 23.7 4.2E+02 0.009 26.5 8.5 73 366-468 52-124 (205)
183 KOG1941 Acetylcholine receptor 23.7 26 0.00056 40.2 -0.1 63 16-81 364-432 (518)
184 PRK03824 hypA hydrogenase nick 23.6 26 0.00057 34.2 -0.0 12 57-68 105-116 (135)
185 PF14446 Prok-RING_1: Prokaryo 23.4 25 0.00053 30.0 -0.2 17 56-72 18-34 (54)
186 PRK06393 rpoE DNA-directed RNA 23.4 37 0.00079 29.9 0.8 23 35-68 4-26 (64)
187 PF14354 Lar_restr_allev: Rest 23.3 53 0.0011 27.2 1.7 26 19-44 5-37 (61)
188 PF03107 C1_2: C1 domain; Int 23.3 56 0.0012 24.0 1.7 28 19-50 2-29 (30)
189 PF14319 Zn_Tnp_IS91: Transpos 23.2 56 0.0012 31.0 2.1 34 31-71 37-72 (111)
190 PRK14714 DNA polymerase II lar 23.0 44 0.00096 43.3 1.7 48 18-72 668-722 (1337)
191 PF13719 zinc_ribbon_5: zinc-r 22.8 35 0.00076 26.3 0.5 11 61-71 4-14 (37)
192 TIGR00100 hypA hydrogenase nic 22.7 31 0.00068 32.8 0.3 28 37-71 71-98 (115)
193 smart00744 RINGv The RING-vari 22.3 1.1E+02 0.0024 25.0 3.4 45 19-66 1-49 (49)
194 KOG3507 DNA-directed RNA polym 22.2 53 0.0011 28.6 1.5 30 15-46 18-47 (62)
195 PF01155 HypA: Hydrogenase exp 21.8 20 0.00043 33.9 -1.2 30 36-72 70-99 (113)
196 PF03071 GNT-I: GNT-I family; 21.6 1E+02 0.0022 36.0 4.1 46 347-397 91-137 (434)
197 PF13717 zinc_ribbon_4: zinc-r 21.5 39 0.00084 26.1 0.5 10 61-70 4-13 (36)
198 smart00064 FYVE Protein presen 21.0 45 0.00097 28.1 0.9 38 16-56 9-46 (68)
199 PRK05582 DNA topoisomerase I; 21.0 61 0.0013 39.2 2.3 51 17-71 571-623 (650)
200 cd02337 ZZ_CBP Zinc finger, ZZ 20.6 61 0.0013 25.8 1.5 29 19-53 2-31 (41)
201 PRK07726 DNA topoisomerase III 20.5 67 0.0014 39.0 2.5 46 17-67 610-657 (658)
202 TIGR02302 aProt_lowcomp conser 20.4 2.1E+02 0.0046 36.2 6.6 38 298-336 45-82 (851)
203 KOG2571 Chitin synthase/hyalur 20.3 2.1E+02 0.0045 36.3 6.5 104 530-640 418-528 (862)
204 TIGR03830 CxxCG_CxxCG_HTH puta 20.0 42 0.00092 31.1 0.6 40 20-69 1-41 (127)
No 1
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=3.8e-243 Score=2085.03 Aligned_cols=771 Identities=89% Similarity=1.433 Sum_probs=696.8
Q ss_pred CCCCCCCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccccCCCCcccC
Q 004118 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILG 80 (773)
Q Consensus 1 ~~~~~~~~~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~kGs~rv~g 80 (773)
|++.|+.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|
T Consensus 1 ~~~~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~g 80 (1079)
T PLN02638 1 MESEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILG 80 (1079)
T ss_pred CCCCCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCcccc
Q 004118 81 DREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHL 160 (773)
Q Consensus 81 d~e~e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (773)
|||||+|+||+||||+|..+++...++++|+|++|+|+||++.|.++..++++.+++++|+|++||.+++|+++++++|+
T Consensus 81 Deeed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 160 (1079)
T PLN02638 81 DEEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERL 160 (1079)
T ss_pred cccccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccc
Confidence 96555558999999999654555567889999999999999988877777777556788999999988999997666665
Q ss_pred ccCCCCCCCCCccccCCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCC-CCCCC
Q 004118 161 SMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGG-DIDAS 239 (773)
Q Consensus 161 ~~~~~~~~~~~~vp~~d~~~~~~~~~~~~~~~~~~~yg~g~~~wk~~~~~wk~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (773)
.++++.+ .||||||+|+.+.+.++|.|||+||+++||||||+||||||+||+||+|++.++.+.....+++|+ ++++.
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 239 (1079)
T PLN02638 161 SMASPGA-GGKRIPYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDAS 239 (1079)
T ss_pred cccCccc-cCCcccccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCc
Confidence 5555543 689999999777778999999999999999999999999999999999887777665544555543 33221
Q ss_pred CCCCcCccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhh
Q 004118 240 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQ 319 (773)
Q Consensus 240 ~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~~i~~~lv~l~~yl~wRi~~~~~~a~~lWl~~~~~Eiwfa~~wlL~q 319 (773)
.+.+++|+++++++++||+||+++++++|+|||++++++|+++++||+|||+|++.+++|+|+++|+||+||+|+|+|+|
T Consensus 240 ~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q 319 (1079)
T PLN02638 240 TDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQ 319 (1079)
T ss_pred cccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 22235789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchhhhhhhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 004118 320 FPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (773)
Q Consensus 320 ~~kw~Pi~R~t~~drL~~r~e~~~~~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~ 399 (773)
++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||++||+|||||||||+|||
T Consensus 320 ~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 399 (1079)
T PLN02638 320 FPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (1079)
T ss_pred cccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHH
Confidence 99999999999999999999987778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHhhhhHhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Q 004118 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV 479 (773)
Q Consensus 400 ~aL~Eaa~FA~~WVPFCrK~~IepRaPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~ 479 (773)
|||+|||+||++||||||||+|||||||+||+++.++++++++|+|++|||+|||||||||+|||+|+++++++|++||.
T Consensus 400 ~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~ 479 (1079)
T PLN02638 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWI 479 (1079)
T ss_pred HHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecC
Q 004118 480 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 559 (773)
Q Consensus 480 m~dgt~w~g~~~rdHp~iiqv~l~~~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDc 559 (773)
|+||++|||++++|||+||||+++++|+.|.+|++||||||||||||||++||+||||||+||||||+||||||||||||
T Consensus 480 m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDC 559 (1079)
T PLN02638 480 MQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 559 (1079)
T ss_pred ccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeeccc
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCCCCcccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhc
Q 004118 560 DHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (773)
Q Consensus 560 Dh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~d~~Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALy 639 (773)
|||+|||++||+||||||||+.|+++|||||||+|+|++++|||+|++++||+++|+|+||+|||+||||||+|||+|||
T Consensus 560 DmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALY 639 (1079)
T PLN02638 560 DHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (1079)
T ss_pred CcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccccCCCcCCC-CCCCCCCCcccCCCCCCCCCCccccchhhccccCCCCchhhHHHhhhhHHH
Q 004118 640 GYEPPLKPKHRKPGLLSSLFGGSRKKNS-KSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (773)
Q Consensus 640 G~~Pp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (773)
|++||...+.....+++ |||++.+++. +.+.+...++...++.+.+.+++++++++++.++..++++++.+++++.++
T Consensus 640 G~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1079)
T PLN02638 640 GYEPPIKPKHKKPGFLS-SLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (1079)
T ss_pred CcCCccccccccccccc-ccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhh
Confidence 99999865432222222 4555533322 111111111111233445667888888887766655667888889999999
Q ss_pred hhcCCCHHHHhhhhhhcCCCCCCCChHhHHHHHHHcccccccCCCCCCCcceeeC
Q 004118 719 KRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEVCCLI 773 (773)
Q Consensus 719 ~~FG~S~~fi~S~~~~~~~~~~~~~~~~~l~ea~~V~sC~YE~~T~WG~evGWiy 773 (773)
++||+|++||+|+++++++.++..+++++|+||++|+||+||++|+||+||||||
T Consensus 719 ~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~Y 773 (1079)
T PLN02638 719 KRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIY 773 (1079)
T ss_pred hhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeee
Confidence 9999999999999999999988889999999999999999999999999999999
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=2.2e-242 Score=2079.35 Aligned_cols=748 Identities=69% Similarity=1.198 Sum_probs=673.4
Q ss_pred CCCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccccCCCCcccCCCCc
Q 004118 5 GETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREE 84 (773)
Q Consensus 5 ~~~~~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~kGs~rv~gd~e~ 84 (773)
+++++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| ||
T Consensus 24 ~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~KgsprV~GD-ee 102 (1085)
T PLN02400 24 SDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSPRVEGD-ED 102 (1085)
T ss_pred ccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCCCCCcc-cc
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred CCCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCC-CCCCCccccCCCCCcccCCccccCCCCCCCccccccC
Q 004118 85 DGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDAS-APKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMA 163 (773)
Q Consensus 85 e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (773)
|||+||+||||+|..+++...+++ . |++.+.+ +++|+. +++|+|++||.|+||+++++++|++++
T Consensus 103 edd~DDlenEf~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~----~~~p~lt~g~~~s~ei~~~~~~~~~~~ 168 (1085)
T PLN02400 103 EDDVDDLENEFNYAQGNGKARHQW---------Q-GEDIELSSSSRHES----QPIPLLTHGQPVSGEIPCATPDNQSVR 168 (1085)
T ss_pred cccchhhhhhhccccccccccccc---------c-ccCccccCcccccC----CCCccccCCcccCCCCCCCCCcccccc
Confidence 888999999999965333322221 1 5555544 445552 478999999989999998887776666
Q ss_pred CCCC---CCCCcc---ccCCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCC
Q 004118 164 SPGV---GPGKRI---HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDID 237 (773)
Q Consensus 164 ~~~~---~~~~~v---p~~d~~~~~~~~~~~~~~~~~~~yg~g~~~wk~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (773)
++.. +.|+|| ||+|+ ..+++++.|||+||+++||||||+||||||+||+||+|++.++.+.. ++++|++++
T Consensus 169 ~~~~~~~~~~~~vh~~p~~d~-~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k~~~~~~~~~--~~~~~g~~~ 245 (1085)
T PLN02400 169 TTSGPLGPAERNANSSPYIDP-RQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTNKY--HEGKGGDME 245 (1085)
T ss_pred CCcccccccCCcccccCccCc-ccCCCccccCccccccccccCcHHHHHHHHHHHhhhhhhcccccccc--ccccccCCC
Confidence 6532 456888 59994 33477899999999999999999999999999999998777666643 345444444
Q ss_pred CCCCCCcCccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Q 004118 238 ASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIF 317 (773)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~~i~~~lv~l~~yl~wRi~~~~~~a~~lWl~~~~~Eiwfa~~wlL 317 (773)
| .+++++|++++++.++||+||+++++++|+|||++++++|+++++||+|||+|++.+++|+|+++|+||+||+|+|+|
T Consensus 246 ~-~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll 324 (1085)
T PLN02400 246 G-TGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWFALSWLL 324 (1085)
T ss_pred C-CCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3 233467889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccccchhhhhhhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh
Q 004118 318 DQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 397 (773)
Q Consensus 318 ~q~~kw~Pi~R~t~~drL~~r~e~~~~~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~l 397 (773)
+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||++||+|||||||||+|
T Consensus 325 ~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~L 404 (1085)
T PLN02400 325 DQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAML 404 (1085)
T ss_pred ccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHH
Confidence 99999999999999999999999887789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhHHHhhhhHhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 004118 398 TFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEG 477 (773)
Q Consensus 398 t~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~g 477 (773)
|||||+|||+||++||||||||+|||||||+||+++.++++++++|+|++|||+|||||||||+|||+|++++++++++|
T Consensus 405 Tf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~~~~~~~ 484 (1085)
T PLN02400 405 TFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKIPEEG 484 (1085)
T ss_pred HHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEe
Q 004118 478 WVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNL 557 (773)
Q Consensus 478 w~m~dgt~w~g~~~rdHp~iiqv~l~~~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnl 557 (773)
|.|+|||+|||++++|||+||||||+++|+.|.+|++||||||||||||||++||+||||||+||||||+||||||||||
T Consensus 485 ~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNl 564 (1085)
T PLN02400 485 WTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNV 564 (1085)
T ss_pred cccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEec
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCCCCcccchhhHHHHHHHHhhhccCCCccccccchhhhhHhh
Q 004118 558 DCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTA 637 (773)
Q Consensus 558 DcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~d~~Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~A 637 (773)
|||||+|||+++|+||||||||+.|+++|||||||+|+|++++|+|+|+++|||+++++|+||+|||+|+||||+|||+|
T Consensus 565 DCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~GldGlqGP~YvGTGC~frR~a 644 (1085)
T PLN02400 565 DCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQA 644 (1085)
T ss_pred ccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeeccccccccCCCccccccCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCcccccccCCCcCCCCCCCCCCCcccCCCCCCCCCCccccchhhccccCCCCchhhHHHhhhhHH
Q 004118 638 LYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSL 717 (773)
Q Consensus 638 LyG~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (773)
|||++||..++.....+.|+|||++++++++.+....+.++..+..+++.+++++++++++.++ +++|++.+++++.+
T Consensus 645 LYG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l 722 (1085)
T PLN02400 645 LYGYDPVLTEEDLEPNIIVKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDIEEGVEG--YDDERSLLMSQKSL 722 (1085)
T ss_pred eccCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccchhhhhhhhhhh
Confidence 9999999765432222222345566665433322222233334455677899999999999887 77788888999999
Q ss_pred HhhcCCCHHHHhhhhhhcCCCCCCCChHhHHHHHHHcccccccCCCCCCCcceeeC
Q 004118 718 EKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEVCCLI 773 (773)
Q Consensus 718 ~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~l~ea~~V~sC~YE~~T~WG~evGWiy 773 (773)
+++||+|++||+|+++++++.++.++++++|+||+|||||+||++|+||+||||||
T Consensus 723 ~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiY 778 (1085)
T PLN02400 723 EKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIY 778 (1085)
T ss_pred hhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCeec
Confidence 99999999999999999999888889999999999999999999999999999999
No 3
>PLN02436 cellulose synthase A
Probab=100.00 E-value=8.8e-239 Score=2043.09 Aligned_cols=754 Identities=64% Similarity=1.124 Sum_probs=679.1
Q ss_pred CCCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccccCCCCcccCCCCc
Q 004118 5 GETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREE 84 (773)
Q Consensus 5 ~~~~~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~kGs~rv~gd~e~ 84 (773)
+++++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| ||
T Consensus 24 ~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs~~~~~d-~e 102 (1094)
T PLN02436 24 EIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGD-EE 102 (1094)
T ss_pred cccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCc-cc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999 67
Q ss_pred CCCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCcc--c--cCCCCCcccCCccccCCCCCCCcccc
Q 004118 85 DGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNE--V--SHNHIPRLTGGQEVSGELSAASPEHL 160 (773)
Q Consensus 85 e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (773)
||++||+||||+|.. ++.+.++++|+|++++|++|++.+.+...+..+ . ..+++|++++|| +++|++ +++|+
T Consensus 103 e~~~dd~e~ef~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~ 178 (1094)
T PLN02436 103 EDDIDDLENEFDYGN-NGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQIPLLTYGE-EDVEIS--SDRHA 178 (1094)
T ss_pred cccchhhhhhhcCcc-cccchHHHHHHHhhhhcccCccccccccccccccccCCCcCCCcccccCc-ccCccC--Ccccc
Confidence 888999999999973 555567889999999999999988764433221 2 135789999988 577776 35677
Q ss_pred ccCCCCCCCCCcc---ccCCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCC
Q 004118 161 SMASPGVGPGKRI---HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDID 237 (773)
Q Consensus 161 ~~~~~~~~~~~~v---p~~d~~~~~~~~~~~~~~~~~~~yg~g~~~wk~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (773)
.++++.++.|||| ||+|. ..+++++.|||+||+++||||||+||||||+||+||+++++++.+ . +++++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~~~~~~~~-~--~~~~~~~~~ 254 (1094)
T PLN02436 179 LIVPPSTGHGNRVHPMPFPDS-SASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNEKLQVVKH-E--GGNDGGNND 254 (1094)
T ss_pred cccCCcccccccccccccccc-cccCCCccCCccccccccccCcHHHHHHHHHHHhhhhhccccccc-c--cccccCCCC
Confidence 7677776678999 48883 234778999999999999999999999999999999855444333 2 344455554
Q ss_pred CCCCCCcCccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Q 004118 238 ASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIF 317 (773)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~~i~~~lv~l~~yl~wRi~~~~~~a~~lWl~~~~~Eiwfa~~wlL 317 (773)
| ++.+++|+++++++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++|+||+||+|+|+|
T Consensus 255 ~-~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~WFaf~Wll 333 (1094)
T PLN02436 255 G-DELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWIL 333 (1094)
T ss_pred C-CCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3 233467888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccccchhhhhhhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh
Q 004118 318 DQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 397 (773)
Q Consensus 318 ~q~~kw~Pi~R~t~~drL~~r~e~~~~~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~l 397 (773)
+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||++||+|||||||||+|
T Consensus 334 ~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~L 413 (1094)
T PLN02436 334 DQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAML 413 (1094)
T ss_pred ccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHH
Confidence 99999999999999999999999887789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhHHHhhhhHhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 004118 398 TFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEG 477 (773)
Q Consensus 398 t~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~g 477 (773)
|||||+|||+||++||||||||+|||||||+||+++.+++++|++|+|++|||+|||||||||+|||+|+++++++|++|
T Consensus 414 Tf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~vp~~~ 493 (1094)
T PLN02436 414 TFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINALVATAQKVPEDG 493 (1094)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred ccccCCCCCCCCCCCCCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEe
Q 004118 478 WVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNL 557 (773)
Q Consensus 478 w~m~dgt~w~g~~~rdHp~iiqv~l~~~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnl 557 (773)
|.|+|||+|||++++|||+||||||+++|+.|.+|++||||||||||||||++||+||||||+||||||+||||||||||
T Consensus 494 ~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNL 573 (1094)
T PLN02436 494 WTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNV 573 (1094)
T ss_pred hhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEec
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCCCCcccchhhHHHHHHHHhhhccCCCccccccchhhhhHhh
Q 004118 558 DCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTA 637 (773)
Q Consensus 558 DcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~d~~Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~A 637 (773)
|||||+|||+++|+||||||||+.|+++|||||||+|+|++++|+|+|+++|||+++++|+||+|||+|+||||+|||+|
T Consensus 574 DCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDGlqGP~YvGTGC~frR~a 653 (1094)
T PLN02436 574 DCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQA 653 (1094)
T ss_pred ccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeeccccccccCCCccccccCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCc-c----cccccCCCcCCCCCCCCCCCcccCCCCCCCCCCccccchhhccccCCCCchhhHHHh
Q 004118 638 LYGYEPPLKPKHRKPGL-L----SSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLM 712 (773)
Q Consensus 638 LyG~~Pp~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (773)
|||++||...+.+...+ | |+|||+++++++++.+...+ ..++.+...+++++.+++++.++ +++|++..+
T Consensus 654 LYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 728 (1094)
T PLN02436 654 LYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKK---KKKNREASKQIHALENIEEGIEG--SNNEKSSET 728 (1094)
T ss_pred eeccCCccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccc--ccchhhhhh
Confidence 99999997655443332 2 23555766654332211111 12344555678889999888777 777888889
Q ss_pred hhhHHHhhcCCCHHHHhhhhhhcCCCCCCCChHhHHHHHHHcccccccCCCCCCCcceeeC
Q 004118 713 SQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEVCCLI 773 (773)
Q Consensus 713 ~~~~~~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~l~ea~~V~sC~YE~~T~WG~evGWiy 773 (773)
+++.++++||+|++||+|+++++++.+...+++++|+||++||||+||++|+||+||||||
T Consensus 729 ~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiY 789 (1094)
T PLN02436 729 PQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIY 789 (1094)
T ss_pred hhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeec
Confidence 9999999999999999999999998888888999999999999999999999999999999
No 4
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=3.2e-227 Score=1947.76 Aligned_cols=699 Identities=66% Similarity=1.158 Sum_probs=624.9
Q ss_pred cccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccccCCCCcccCCCCcCCCCCCCC
Q 004118 13 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGA 92 (773)
Q Consensus 13 ~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~kGs~rv~gd~e~e~~~dd~~ 92 (773)
+..++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||||||+++||++
T Consensus 11 ~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~~ 90 (1044)
T PLN02915 11 QSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDFE 90 (1044)
T ss_pred cCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhhh
Confidence 66799999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCccccccCCCCCCCCCc
Q 004118 93 SDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKR 172 (773)
Q Consensus 93 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (773)
+||+|..+++. +.|++++|++|++.+.+++.. ++++|++++ +++++
T Consensus 91 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~------------------- 136 (1044)
T PLN02915 91 DEFQIKSPQDH------EPVHQNVFAGSENGDYNAQQW-----RPGGPAFSS----TGSVA------------------- 136 (1044)
T ss_pred hhhcccccccc------chhhhhhccCCCCcccccccc-----CCCCccccC----CCCcC-------------------
Confidence 99998642211 228899999998876432211 134555655 12221
Q ss_pred cccCCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCCCCCCCcCccccccc
Q 004118 173 IHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDE 252 (773)
Q Consensus 173 vp~~d~~~~~~~~~~~~~~~~~~~yg~g~~~wk~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (773)
| +.|+|+|| |||||+||||||+||+||+ |++.+.+. . + +.+ +..+++|++++++
T Consensus 137 ----~--------~~~~~~~~----~~g~~~wk~r~~~wk~~~~-~~~~~~~~-~----~--~~~--~~~~~~~~~~~~~ 190 (1044)
T PLN02915 137 ----G--------KDLEAERE----GYGNAEWKDRVDKWKTRQE-KRGLVNKD-D----S--DDG--DDKGDEEEYLLAE 190 (1044)
T ss_pred ----C--------CCcCcccc----CcCCHHHHHHHHHHHhhhh-hhcccccc-c----c--CCC--CCCCCcccccccc
Confidence 1 35899988 9999999999999999997 44444432 1 1 111 1223578889999
Q ss_pred cCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhccccccccccchh
Q 004118 253 ARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYL 332 (773)
Q Consensus 253 ~~~pL~rk~~i~~~~~~~yR~~i~~~lv~l~~yl~wRi~~~~~~a~~lWl~~~~~Eiwfa~~wlL~q~~kw~Pi~R~t~~ 332 (773)
.++||+||+++++++|+|||++++++|+++++||+|||+|++.+++|+|+++|+||+||+|+|+|+|++||+||+|.||+
T Consensus 191 ~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~ 270 (1044)
T PLN02915 191 ARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYL 270 (1044)
T ss_pred cCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhh
Q 004118 333 DRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW 412 (773)
Q Consensus 333 drL~~r~e~~~~~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~W 412 (773)
|||++||++++++++||+|||||||+||.||||++|+||||||||+|||++||+|||||||||+||||||+|||+||++|
T Consensus 271 drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~W 350 (1044)
T PLN02915 271 DRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRW 350 (1044)
T ss_pred HHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhh
Confidence 99999999887788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCC
Q 004118 413 VPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTR 492 (773)
Q Consensus 413 VPFCrK~~IepRaPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~r 492 (773)
|||||||+|||||||+||+++.++++++++|+|++|||+|||||||||+|||+|++++++++++||.|+|||+|||++++
T Consensus 351 vPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~ 430 (1044)
T PLN02915 351 VPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTR 430 (1044)
T ss_pred cchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHH
Q 004118 493 DHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREA 572 (773)
Q Consensus 493 dHp~iiqv~l~~~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~a 572 (773)
|||+||||||+++|+.|.+|++||||||||||||||++||+||||||+||||||+|||||||||||||||+|||+++|+|
T Consensus 431 dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~A 510 (1044)
T PLN02915 431 DHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREA 510 (1044)
T ss_pred CCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhh
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcceEEEccCccccCCCCcccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhcCCCCCCCCCCCCC
Q 004118 573 MCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKP 652 (773)
Q Consensus 573 mcfflDp~~g~~vafVQtPQrF~N~d~~Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALyG~~Pp~~~~~~~~ 652 (773)
|||||||+.|+++|||||||+|+|++++|+|+||++|||+++++|+||+|||+|+||||+|||+||||++||..++.++.
T Consensus 511 MCf~lD~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~~ 590 (1044)
T PLN02915 511 MCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKM 590 (1044)
T ss_pred ceeeecCCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987665554
Q ss_pred Cc-c----cccccCCCcCCCCCCCC-CC--------------Cc-------ccCCCCCCCCCCccccchhhccccCCCCc
Q 004118 653 GL-L----SSLFGGSRKKNSKSSKK-GS--------------DK-------KKSSKHVDPTVPIFSLEDIEEGVEGAGFD 705 (773)
Q Consensus 653 ~~-~----~~~~~~~~~~~~~~~~~-~~--------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (773)
+| | |+|||++++++++..++ .. .+ .+.....+++.+++++++|++++++ ++
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 668 (1044)
T PLN02915 591 TCDCWPSWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEG--YD 668 (1044)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cc
Confidence 43 1 23566666554332111 00 00 0001133456678899999998887 55
Q ss_pred h-hhHHHhhhhHHHhhcCCCHHHHhhhhhhcCCCCCCCChHhHHHHHHHcccccccCCCCCCCcceeeC
Q 004118 706 D-EKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEVCCLI 773 (773)
Q Consensus 706 ~-~~~~~~~~~~~~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~l~ea~~V~sC~YE~~T~WG~evGWiy 773 (773)
+ |+++.++++.++|+||+|++||+|+++++++.+.+++++++|+||++||||+||++|+||+||||+|
T Consensus 669 ~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~Y 737 (1044)
T PLN02915 669 ELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIY 737 (1044)
T ss_pred chhhhhhhhhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccc
Confidence 5 7778899999999999999999999999888888889999999999999999999999999999999
No 5
>PLN02189 cellulose synthase
Probab=100.00 E-value=1.4e-221 Score=1900.01 Aligned_cols=705 Identities=68% Similarity=1.169 Sum_probs=633.9
Q ss_pred CCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccccCCCCcccCCCCcC
Q 004118 6 ETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREED 85 (773)
Q Consensus 6 ~~~~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~kGs~rv~gd~e~e 85 (773)
++++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||
T Consensus 23 ~~~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~~v~gd-~ee 101 (1040)
T PLN02189 23 HEEPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPRVEGD-DDE 101 (1040)
T ss_pred ccCCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCc-ccc
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999999 678
Q ss_pred CCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCc--cccCCCCCCCc--cccc
Q 004118 86 GDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQ--EVSGELSAASP--EHLS 161 (773)
Q Consensus 86 ~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~ 161 (773)
|++||++|||+|.. ++.+.++++|+|++++|++|++.+... +.+++|++++|| .+++|++..|+ +|+.
T Consensus 102 ~~~dd~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1040)
T PLN02189 102 EDIDDIEHEFNIDD-EQDKNKHITEAMLHGKMSYGRGPDDDE-------NNQFPPVITGVRSRPVSGEFPIGSGYGHGEQ 173 (1040)
T ss_pred ccchhhhhhccccc-cccchhHHHHHHhhhhcccCCCcccCC-------CcCCCcccccCccccccCCcCcccccccccc
Confidence 88999999999965 445567889999999999999876432 224678999987 37788873221 3444
Q ss_pred cCCCCCCCCCcc---ccCCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCC
Q 004118 162 MASPGVGPGKRI---HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDA 238 (773)
Q Consensus 162 ~~~~~~~~~~~v---p~~d~~~~~~~~~~~~~~~~~~~yg~g~~~wk~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (773)
++++. .|||| ||+| .+.+.|||+||++ ||||||+||+||++ .++ +
T Consensus 174 ~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~--------wk~rv~~wk~~~~~--------------~~~--~- 221 (1040)
T PLN02189 174 MLSSS--LHKRVHPYPVSE-----PGSAKWDEKKEGG--------WKERMDDWKMQQGN--------------LGP--D- 221 (1040)
T ss_pred ccCCc--ccCccCcccccC-----CCcccCCcccccc--------HHHHHHHHHhhccc--------------CCC--C-
Confidence 55555 48998 4877 4568999999975 99999999999951 111 1
Q ss_pred CCCCCcCccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHh
Q 004118 239 STDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFD 318 (773)
Q Consensus 239 ~~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~~i~~~lv~l~~yl~wRi~~~~~~a~~lWl~~~~~Eiwfa~~wlL~ 318 (773)
++++++|.++++++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++|+||+||+|+|+|+
T Consensus 222 -~~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~ 300 (1040)
T PLN02189 222 -PDDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILD 300 (1040)
T ss_pred -CCCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHc
Confidence 2233567788899999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred hccccccccccchhhhhhhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 004118 319 QFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (773)
Q Consensus 319 q~~kw~Pi~R~t~~drL~~r~e~~~~~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt 398 (773)
|++||+||+|.||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||++||+|||||||||+||
T Consensus 301 q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LT 380 (1040)
T PLN02189 301 QFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLT 380 (1040)
T ss_pred cCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHH
Confidence 99999999999999999999988777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHhhhhHhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc
Q 004118 399 FEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGW 478 (773)
Q Consensus 399 ~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw 478 (773)
||||.|||+||++||||||||+|||||||+||+++.++++++++|+|++|||+||+||||||+|||+|+++++++|++||
T Consensus 381 f~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~ 460 (1040)
T PLN02189 381 FEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGW 460 (1040)
T ss_pred HHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEec
Q 004118 479 VMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLD 558 (773)
Q Consensus 479 ~m~dgt~w~g~~~rdHp~iiqv~l~~~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlD 558 (773)
.|+||++|||++++|||+||||+++++|+.|.+|++||||||||||||||++||+||||||+||||||+|||||||||||
T Consensus 461 ~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLD 540 (1040)
T PLN02189 461 IMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLD 540 (1040)
T ss_pred eeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEcc
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCCCCcccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhh
Q 004118 559 CDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTAL 638 (773)
Q Consensus 559 cDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~d~~Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~AL 638 (773)
||||+|||++||+||||||||+.|+++|||||||+|+|++++|+|+||+++||+++|+|+||+|||+||||||+|||+||
T Consensus 541 CDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~AL 620 (1040)
T PLN02189 541 CDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQAL 620 (1040)
T ss_pred CccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecccccCCCccccccCceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCcccccccCCCcCCCCCCCCCCCcccCCCCCCCCCCccccchhhccccCCCCchhhHHHhhhhHHH
Q 004118 639 YGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (773)
Q Consensus 639 yG~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (773)
||++||...+.+..+||++|||.+++++++.+. +.+... ++.++ ++++++..+++++++
T Consensus 621 yG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-------~~~~~--~~~~~~~~~~~~~~~ 679 (1040)
T PLN02189 621 YGYDPPKGPKRPKMVTCDCCPCFGRRKKKHAKN------------GLNGEV-------AALGG--MESDKEMLMSQMNFE 679 (1040)
T ss_pred eccCcccccccccccccchhhhccccccccccc------------cccccc-------ccccc--cchhhhhhhhhhhhH
Confidence 999999776666665555555555544221110 000000 11112 344556677889999
Q ss_pred hhcCCCHHHHhhhhhhcCCCCCCCChHhHHHHHHHcccccccCCCCCCCcceeeC
Q 004118 719 KRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEVCCLI 773 (773)
Q Consensus 719 ~~FG~S~~fi~S~~~~~~~~~~~~~~~~~l~ea~~V~sC~YE~~T~WG~evGWiy 773 (773)
++||+|++||+|+..+.++.++.++++++++||++|+||+||++|+||+||||||
T Consensus 680 ~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~Y 734 (1040)
T PLN02189 680 KKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIY 734 (1040)
T ss_pred hhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeec
Confidence 9999999999999988888888888999999999999999999999999999999
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=1.6e-210 Score=1800.38 Aligned_cols=667 Identities=64% Similarity=1.117 Sum_probs=585.3
Q ss_pred cccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccccCCCCcccCCCCcCCCCCCCC
Q 004118 13 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGA 92 (773)
Q Consensus 13 ~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~kGs~rv~gd~e~e~~~dd~~ 92 (773)
-.+++|+||||||+||+++|||+|||||||+|||||||||||||||||+||||||||| ||+++||+|
T Consensus 2 ~~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk-------------~~~~~~d~~ 68 (977)
T PLN02195 2 MESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD-------------AENVFDDVE 68 (977)
T ss_pred CcCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc-------------cccccchhh
Confidence 3578999999999999999999999999999999999999999999999999999998 266788999
Q ss_pred CccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCccccccCCCCCCCCCc
Q 004118 93 SDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKR 172 (773)
Q Consensus 93 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (773)
+||+-+ .+++ .++|++|++.+ .+.+++|++++ . ++|
T Consensus 69 ~~~~~~------~~~~-----~~~~~~~~~~~---------~~~~~~~~~~~-~--~~~--------------------- 104 (977)
T PLN02195 69 TKHSRN------QSTM-----ASHLNDTQDVG---------IHARHISSVST-V--DSE--------------------- 104 (977)
T ss_pred hhhccc------hhhh-----hhhcccCcCCC---------CCCcccccccc-C--CCc---------------------
Confidence 998421 2232 36777776532 11123343433 0 111
Q ss_pred cccCCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCCCCCCCcCccccccc
Q 004118 173 IHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDE 252 (773)
Q Consensus 173 vp~~d~~~~~~~~~~~~~~~~~~~yg~g~~~wk~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (773)
+.. +|||++||||||+||.||+|++.++.+... .++ +++ ++.+++|+++ |+
T Consensus 105 ---------------~~~-------~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~-~~~---~~~--~~~~~~~~~~-~~ 155 (977)
T PLN02195 105 ---------------LND-------EYGNPIWKNRVESWKDKKNKKKKSAKKKEA-HKA---QIP--PEQQMEEKPS-AD 155 (977)
T ss_pred ---------------ccC-------ccCCHHHHHHHHHHHHhhhhhccccccccc-ccc---CCC--CccCCccccc-cc
Confidence 111 399999999999999999877765555322 222 222 2334667776 99
Q ss_pred cCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhccccccccccchh
Q 004118 253 ARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYL 332 (773)
Q Consensus 253 ~~~pL~rk~~i~~~~~~~yR~~i~~~lv~l~~yl~wRi~~~~~~a~~lWl~~~~~Eiwfa~~wlL~q~~kw~Pi~R~t~~ 332 (773)
.++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+
T Consensus 156 ~~~pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~ 235 (977)
T PLN02195 156 AYEPLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYI 235 (977)
T ss_pred ccCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhh
Q 004118 333 DRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW 412 (773)
Q Consensus 333 drL~~r~e~~~~~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~W 412 (773)
|||++||++++++++||+|||||||+||.||||++|+||||||||+|||++||+|||||||||+||||||.|||+||++|
T Consensus 236 drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~W 315 (977)
T PLN02195 236 DRLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKW 315 (977)
T ss_pred HHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhh
Confidence 99999999877789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCC
Q 004118 413 VPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTR 492 (773)
Q Consensus 413 VPFCrK~~IepRaPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~r 492 (773)
|||||||+|||||||+||+++.++++++++|+|++|||+|||||||||+|||+|++++++++++||.|+|||+|||++++
T Consensus 316 vPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~ 395 (977)
T PLN02195 316 VPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTR 395 (977)
T ss_pred cccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred CCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHH
Q 004118 493 DHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREA 572 (773)
Q Consensus 493 dHp~iiqv~l~~~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~a 572 (773)
|||+||||||+++|+.|.+|++||||||||||||||++||+||||||++|||||+|||||||||||||||+|||++||+|
T Consensus 396 dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~A 475 (977)
T PLN02195 396 DHPGMIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREA 475 (977)
T ss_pred CCcchhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHH
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcceEEEccCccccCCCCcccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhcCCCCCCCCCCCCC
Q 004118 573 MCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKP 652 (773)
Q Consensus 573 mcfflDp~~g~~vafVQtPQrF~N~d~~Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALyG~~Pp~~~~~~~~ 652 (773)
||||+||+.|+++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++||..++.++.
T Consensus 476 MCf~~D~~~g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~ 555 (977)
T PLN02195 476 MCFLMDPVVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKS 555 (977)
T ss_pred HhhccCcccCCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987665555
Q ss_pred Cc-ccccccCCCcCCCCCCCCCCCcccCCCCCCCCCCccccchhhccccCCCCchhhHHHhhhhHHHhhcCCCHHHHhhh
Q 004118 653 GL-LSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVAST 731 (773)
Q Consensus 653 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~S~~fi~S~ 731 (773)
++ ||+|||+++++.... ..+..+..++.+.+.++++++++++. .+.|++..++++.++++||+|++||+|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~fG~S~~fi~S~ 627 (977)
T PLN02195 556 SSSSSSCCCPTKKKPEQD---PSEIYRDAKREDLNAAIFNLREIDNY-----DEYERSMLISQMSFEKTFGLSSVFIEST 627 (977)
T ss_pred cccccccccccccccccc---chhhcccccccccccccccccccccc-----chhhhhhhhhhhHHHHhhcccHHHHHHH
Confidence 44 434555544442211 11111222333344455666654331 2336677888999999999999999999
Q ss_pred hhhcCCCCCCCChHhHHHHHHHcccccccCCCCCCCcceeeC
Q 004118 732 LMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEVCCLI 773 (773)
Q Consensus 732 ~~~~~~~~~~~~~~~~l~ea~~V~sC~YE~~T~WG~evGWiy 773 (773)
+++.++.+..++++++|+||++|+||+||++|+||+||||||
T Consensus 628 ~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~Y 669 (977)
T PLN02195 628 LMENGGVPESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIY 669 (977)
T ss_pred HHHhcCCCCCCCcHHHHHHHHhhhcccCccccchhhhcCeec
Confidence 999988888888999999999999999999999999999999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=8.8e-180 Score=1554.17 Aligned_cols=637 Identities=50% Similarity=0.894 Sum_probs=526.2
Q ss_pred CccccccCCccccc--cCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccccCCCCcccCCCCcCC
Q 004118 9 VKSIKNVGGQVCQI--CGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDG 86 (773)
Q Consensus 9 ~k~~~~~~~~~C~i--Cgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~kGs~rv~gd~e~e~ 86 (773)
.+.+++..+..|.+ |+.+++.+++|+...+| ||+|.|||+||-++.+.| +.||+||++||.+ | +++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------~--~~~ 183 (1135)
T PLN02248 116 HPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG-GICPGCKEPYKVT--------D--LDD 183 (1135)
T ss_pred CcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-CCCCCCccccccc--------c--ccc
Confidence 46688889999998 99999999999999999 999999999999999996 7999999999765 3 222
Q ss_pred CCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCC-CCCcccCCccccCCCCCCCccccccCCC
Q 004118 87 DADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHN-HIPRLTGGQEVSGELSAASPEHLSMASP 165 (773)
Q Consensus 87 ~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (773)
+.+|.+.+ ... ++.. +.++.+...+.. +...+..+| +|||+ |+
T Consensus 184 ~~~~~~~~----------~~~----~~~~----------~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~----- 227 (1135)
T PLN02248 184 EVPDESSG----------ALP----LPPP----------GGSKMDRRLSLMKSNSLLMRSQ--TGDFD-----HN----- 227 (1135)
T ss_pred cccccccc----------ccc----CCCC----------CCcccccccccccccchhccCC--CCCCC-----Cc-----
Confidence 22222211 111 1110 001111110000 011233455 67776 43
Q ss_pred CCCCCCccccCCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCCCCCCCcC
Q 004118 166 GVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVD 245 (773)
Q Consensus 166 ~~~~~~~vp~~d~~~~~~~~~~~~~~~~~~~yg~g~~~wk~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (773)
|||+++ +++|||||+.|++... .|++.+ + . .
T Consensus 228 --------------------~w~~~~--~~~~~~~~~~~~~~~~----------------------~~~~~~---~-~-~ 258 (1135)
T PLN02248 228 --------------------RWLFET--KGTYGYGNAVWPKDDG----------------------YGDDGG---G-G-G 258 (1135)
T ss_pred --------------------eeeeec--ccccccccccCccccc----------------------cCCCCC---c-c-c
Confidence 899998 8899999999998632 111101 0 1 1
Q ss_pred ccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 004118 246 DSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLP 325 (773)
Q Consensus 246 ~~~~~~~~~~pL~rk~~i~~~~~~~yR~~i~~~lv~l~~yl~wRi~~~~~~a~~lWl~~~~~Eiwfa~~wlL~q~~kw~P 325 (773)
...+++++|+||+||+++++++|+|||++++++|+++++||+|||+|++.+++|+|+++|+||+||+|+|+|+|++||+|
T Consensus 259 ~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~P 338 (1135)
T PLN02248 259 PGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLCP 338 (1135)
T ss_pred cccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 11568999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred ccccchhhhhhhhhhcCC-----CCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHH
Q 004118 326 VNRETYLDRLSLRYEREG-----EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFE 400 (773)
Q Consensus 326 i~R~t~~drL~~r~e~~~-----~~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~ 400 (773)
|+|.||+++|++||+.++ ++++||+|||||||+||.||||++|+||||||||+|||++||+||||||||++||||
T Consensus 339 v~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf~ 418 (1135)
T PLN02248 339 INRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTFE 418 (1135)
T ss_pred cccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHHH
Confidence 999999999999998543 357899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHhhhhHhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHh-----------
Q 004118 401 ALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAK----------- 469 (773)
Q Consensus 401 aL~Eaa~FA~~WVPFCrK~~IepRaPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~----------- 469 (773)
||.|||+||++||||||||+|||||||+||+++.++++++++|+|++|||+|||||||||+|||+|++.
T Consensus 419 AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~~~rs~~~n~~ 498 (1135)
T PLN02248 419 AMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNAR 498 (1135)
T ss_pred HHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999641
Q ss_pred -------------------hccCccccccccCCCCCCCCC--------CCCCCcceeeeccCCC------------CCCC
Q 004118 470 -------------------AQKIPEEGWVMQDGTPWPGNN--------TRDHPGMIQVFLGENG------------GLDA 510 (773)
Q Consensus 470 -------------------~~~~~~~gw~m~dgt~w~g~~--------~rdHp~iiqv~l~~~g------------~~d~ 510 (773)
.+++++++| |+|||+|||+| ++|||+||||||++++ ..|.
T Consensus 499 ~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~~~~~~~~d~ 577 (1135)
T PLN02248 499 EEIKAKKKQRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSADDENLIDF 577 (1135)
T ss_pred HHHHhhhhhhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCcccccccccc
Confidence 134678889 99999999994 4699999999998754 1122
Q ss_pred --CCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEE
Q 004118 511 --EGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (773)
Q Consensus 511 --~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafV 588 (773)
.+.+||||||||||||||++||+||||||+|+||||+|||||||||||||||+|||++||+||||||||+ |+++|||
T Consensus 578 ~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~-g~~vAfV 656 (1135)
T PLN02248 578 TDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRG-GDRICYV 656 (1135)
T ss_pred cccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCC-CCceEEE
Confidence 2348999999999999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred ccCccccCCCCcccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhcCCCCCCCCCCCCCCcccccccCCCcCCCC
Q 004118 589 QFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSK 668 (773)
Q Consensus 589 QtPQrF~N~d~~Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALyG~~Pp~~~~~~~~~~~~~~~~~~~~~~~~ 668 (773)
||||+|+|++++|||+||+++||+++|+|+||+|||+||||||+|||+||||++||+.++..+. |+ |||+.+++++.
T Consensus 657 QFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~~~~--~~-~~~~~~~~~~~ 733 (1135)
T PLN02248 657 QFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHSGC--FG-SCKFTKKKKKE 733 (1135)
T ss_pred cCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCccccccccc--cc-ccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999987654443 22 23333333211
Q ss_pred CCCCCCCcccCCCCCCCCCCccccchhhccccCCCCchhhHHHhhhhHHHhhcCCCHHHHhhhhh-hcCCC---------
Q 004118 669 SSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLM-ENGGV--------- 738 (773)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~S~~fi~S~~~-~~~~~--------- 738 (773)
... +.+. .+++++ .+++ ++.+.++++||+|+.||+|+.. +.++.
T Consensus 734 ~~~--------------~~~~-~~~~~~-------~~~~----~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~~ 787 (1135)
T PLN02248 734 TSA--------------SEPE-EQPDLE-------DDDD----LELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSVK 787 (1135)
T ss_pred ccc--------------cccc-cccccc-------ccch----hhhhhhhhhhccchhhhhhhHHHhhcccccccccccc
Confidence 100 0000 011111 1111 3456789999999999999953 22221
Q ss_pred ----------CCCCChHhHHHHHHHcccccccCCCCCCCcceeeC
Q 004118 739 ----------PQSATHETLLKEAIHVISCGYEDKTEWGSEVCCLI 773 (773)
Q Consensus 739 ----------~~~~~~~~~l~ea~~V~sC~YE~~T~WG~evGWiy 773 (773)
+....++++|+||++|+||+||++|+||+||||+|
T Consensus 788 ~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~Y 832 (1135)
T PLN02248 788 NGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIY 832 (1135)
T ss_pred cccccccccccccCCcHHHHHHHHhhcccccccCCchhhhcCeee
Confidence 12234678999999999999999999999999998
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=9.6e-144 Score=1221.74 Aligned_cols=419 Identities=70% Similarity=1.172 Sum_probs=394.8
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCchhhh
Q 004118 351 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYF 430 (773)
Q Consensus 351 VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~YF 430 (773)
|||||||+||.||||++|+|||||+||+|||++||+||||||||++||||||.|||+||++||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCCCC
Q 004118 431 AQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDA 510 (773)
Q Consensus 431 s~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g~~d~ 510 (773)
+++.++++++++|+|++||++|||||||||+|||+|+++.+++|+++|.|+||++|||++++|||+||||+++++++.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEcc
Q 004118 511 EGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQF 590 (773)
Q Consensus 511 ~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQt 590 (773)
+|++||+||||||||||+++||+||||||+|+||||+|||||||||||||||+|||+++|++|||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCcccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhcCCCCCCCCCCCCCCcccccccCCCcCCCCCC
Q 004118 591 PQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSS 670 (773)
Q Consensus 591 PQrF~N~d~~Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALyG~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (773)
||+|+|++++|+|+|++++||+++++|+||+|||+|+||||+|||+||||++||...+....+|||+|||++++|+++..
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~~~~~~c~~~~k~~~~~ 320 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTCCCCSCCFGRRKKKKSK 320 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcceeeeecccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999998887777665555555555544332
Q ss_pred CCCCCcccCCCCCCCCCCccccchhhccccCCCCchhhHHHhhhhHHHhhcCCCHHHHhhhhhhcCCCCCCCChHhHHHH
Q 004118 671 KKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKE 750 (773)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~l~e 750 (773)
++. +++..++.+++.+++++++++|+.++ .++|++..+++++|+++||+|++||+|+.+++++.+.+.+++++|+|
T Consensus 321 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~E 396 (720)
T PF03552_consen 321 KKP--KKRASKRRESSSPIFALEDIEEGAEG--SDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLEE 396 (720)
T ss_pred ccc--hhcccccccccccccccccccccccc--chhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 221 23334566778899999999998776 67788899999999999999999999999988888989999999999
Q ss_pred HHHcccccccCCCCCCCcceeeC
Q 004118 751 AIHVISCGYEDKTEWGSEVCCLI 773 (773)
Q Consensus 751 a~~V~sC~YE~~T~WG~evGWiy 773 (773)
|+||+||+||++|+|||||||||
T Consensus 397 A~~V~sC~YE~~T~WGkevGwiY 419 (720)
T PF03552_consen 397 AIHVASCGYEDKTEWGKEVGWIY 419 (720)
T ss_pred HHHHhcCCccccCCcccccceEE
Confidence 99999999999999999999998
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=4.2e-142 Score=1211.16 Aligned_cols=446 Identities=39% Similarity=0.716 Sum_probs=399.5
Q ss_pred ccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhccccccccccch
Q 004118 252 EARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETY 331 (773)
Q Consensus 252 ~~~~pL~rk~~i~~~~~~~yR~~i~~~lv~l~~yl~wRi~~~~~~a~~lWl~~~~~Eiwfa~~wlL~q~~kw~Pi~R~t~ 331 (773)
...+||++++++++++ ||++.+++++++++||+||++++++++ ++|+++++||+||+|+|+|+|++||+|++|.|+
T Consensus 6 ~~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~ 81 (756)
T PLN02190 6 SSLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPY 81 (756)
T ss_pred CCCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCC
Confidence 3458999999999985 899999999999999999999999887 689999999999999999999999999999999
Q ss_pred hhhhhhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhh
Q 004118 332 LDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARK 411 (773)
Q Consensus 332 ~drL~~r~e~~~~~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~ 411 (773)
|++|++|++ +||+||||||||||.||||++|+||||||||+|||++||+|||||||+++||||||.|||+||++
T Consensus 82 p~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~ 155 (756)
T PLN02190 82 PDRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKI 155 (756)
T ss_pred cHHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhh
Confidence 999999984 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCC--CCCCCC
Q 004118 412 WVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDG--TPWPGN 489 (773)
Q Consensus 412 WVPFCrK~~IepRaPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dg--t~w~g~ 489 (773)
||||||||+|||||||+||+.+. +.+.+++|++||++||+||||||+||++.. ....|.+.++ ++|+++
T Consensus 156 WvPFCrK~~IepRaPe~YF~~~~---~~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~ 226 (756)
T PLN02190 156 WVPFCKKYNVRVRAPFRYFLNPP---VATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNT 226 (756)
T ss_pred hcccccccCCCcCCHHHHhcCCC---CCCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCC
Confidence 99999999999999999999753 334568999999999999999999999875 2345766656 789999
Q ss_pred CCCCCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHH
Q 004118 490 NTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKAL 569 (773)
Q Consensus 490 ~~rdHp~iiqv~l~~~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~L 569 (773)
+++|||+||||+++++|+ +.++++||+||||||||||+++||+||||||+|+||||+|||||||||||||||+|||+++
T Consensus 227 ~~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~ 305 (756)
T PLN02190 227 KPNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVV 305 (756)
T ss_pred CCCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHH
Confidence 999999999999999775 3468899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCC-CcceEEEccCccccCCCCcccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhcCCCCCCCCC
Q 004118 570 REAMCFMMDPNL-GKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPK 648 (773)
Q Consensus 570 r~amcfflDp~~-g~~vafVQtPQrF~N~d~~Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALyG~~Pp~~~~ 648 (773)
|+|||||||++. ++++|||||||+|+ |+|+||+++||+++++|+||+|||+|+||||+|||+||||++||...+
T Consensus 306 r~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~ 380 (756)
T PLN02190 306 RQAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLED 380 (756)
T ss_pred HHhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCcccccc
Confidence 999999999864 46899999999998 789999999999999999999999999999999999999999985443
Q ss_pred CCCCCcccccccCCCcCCCCCCCCCCCcccCCCCCCCCCCccccchhhccccCCCCchhhHHHhhhhHHHhhcCCCHHHH
Q 004118 649 HRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFV 728 (773)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~S~~fi 728 (773)
..+. .+ .+ +++ .+++.+++++||+|++||
T Consensus 381 ~~~~----------------~~----------------~~------------------~~~-~~~~~~~~~~fg~s~~f~ 409 (756)
T PLN02190 381 DGSL----------------SS----------------VA------------------TRE-FLAEDSLAREFGNSKEMV 409 (756)
T ss_pred cccc----------------cc----------------cc------------------ccc-ccchhhhhhhcCCcHHHH
Confidence 1100 00 00 000 133456789999999999
Q ss_pred hhhhhhcCCCCC-CCChHhHHHHHHHcccccccCCCCCCCcceeeC
Q 004118 729 ASTLMENGGVPQ-SATHETLLKEAIHVISCGYEDKTEWGSEVCCLI 773 (773)
Q Consensus 729 ~S~~~~~~~~~~-~~~~~~~l~ea~~V~sC~YE~~T~WG~evGWiy 773 (773)
+|+.++..+.+. ..+.+++++||++|+||+||++|+||+||||+|
T Consensus 410 ~s~~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~y 455 (756)
T PLN02190 410 KSVVDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLY 455 (756)
T ss_pred HHHHHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCccc
Confidence 999865543332 334678999999999999999999999999998
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=3e-133 Score=1142.25 Aligned_cols=427 Identities=37% Similarity=0.695 Sum_probs=386.2
Q ss_pred ccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhcccccch-HHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 004118 252 EARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNA-IALWLISVICEIWFAISWIFDQFPKWLPVNRET 330 (773)
Q Consensus 252 ~~~~pL~rk~~i~~~~~~~yR~~i~~~lv~l~~yl~wRi~~~~~~a-~~lWl~~~~~Eiwfa~~wlL~q~~kw~Pi~R~t 330 (773)
...+||+++++++++. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+||+|.|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 4678999999999986 6999999999999999999999887655 789999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhh
Q 004118 331 YLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAR 410 (773)
Q Consensus 331 ~~drL~~r~e~~~~~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~ 410 (773)
++|||+++++ .++||+|||||||+||.||||++|+|||||+||+|||++||+|||||||||+||||||.|||+||+
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999987654 368999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCC-----CC
Q 004118 411 KWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDG-----TP 485 (773)
Q Consensus 411 ~WVPFCrK~~IepRaPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dg-----t~ 485 (773)
+||||||||+|||||||+||+++ +++|++||++||+||||||+|||+++++ .+++++ |.+.++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~--------~~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSN--------SHSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccC--------CCccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 99999999999999999999987 2578899999999999999999999977 666655 554433 78
Q ss_pred CCCCC-CCCCCcceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCC
Q 004118 486 WPGNN-TRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYIN 564 (773)
Q Consensus 486 w~g~~-~rdHp~iiqv~l~~~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~n 564 (773)
|+++. ++|||+||||+++++++.|.+|.+||+|||||||||||++||+||||||++|||||+|||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98875 68999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhhcCCCCCcceEEEccCccccCCCCcccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhcCCCCC
Q 004118 565 NSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP 644 (773)
Q Consensus 565 np~~Lr~amcfflDp~~g~~vafVQtPQrF~N~d~~Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALyG~~Pp 644 (773)
||++|++|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998331
Q ss_pred CCCCCCCCCcccccccCCCcCCCCCCCCCCCcccCCCCCCCCCCccccchhhccccCCCCchhhHHHhhhhHHHhhcCCC
Q 004118 645 LKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQS 724 (773)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~S 724 (773)
... ++++ .++++
T Consensus 393 ~~~---------------------------------------------~~~~-----------------------~~~~~ 404 (734)
T PLN02893 393 LIL---------------------------------------------PEIP-----------------------ELNPD 404 (734)
T ss_pred ccc---------------------------------------------hhhh-----------------------hcccc
Confidence 000 0000 01111
Q ss_pred HHHHhhhhhhcCCCCCCCChHhHHHHHHHcccccccCCCCCCCcceeeC
Q 004118 725 AVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEVCCLI 773 (773)
Q Consensus 725 ~~fi~S~~~~~~~~~~~~~~~~~l~ea~~V~sC~YE~~T~WG~evGWiy 773 (773)
... .+++...++++||++|+||.||++|+||++|||+|
T Consensus 405 ~~~-----------~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~y 442 (734)
T PLN02893 405 HLV-----------DKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRY 442 (734)
T ss_pred ccc-----------ccccchHHHHHHhhhccccccccCCccccccceEe
Confidence 111 22335677999999999999999999999999997
No 11
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=1.7e-44 Score=311.03 Aligned_cols=80 Identities=71% Similarity=1.393 Sum_probs=42.0
Q ss_pred CccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccccCCCCcccCCCCcCCCC
Q 004118 9 VKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDA 88 (773)
Q Consensus 9 ~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~kGs~rv~gd~e~e~~~ 88 (773)
+|||+++++|+||||||+||++++|++|||||||+|||||||||||||||+|+|||||||||||||||||+|| |+|||+
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gD-eeedd~ 79 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGD-EEEDDV 79 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS------S
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCC-ccccCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999 555655
Q ss_pred C
Q 004118 89 D 89 (773)
Q Consensus 89 d 89 (773)
|
T Consensus 80 d 80 (80)
T PF14569_consen 80 D 80 (80)
T ss_dssp -
T ss_pred C
Confidence 4
No 12
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=9.7e-35 Score=336.81 Aligned_cols=256 Identities=25% Similarity=0.425 Sum_probs=200.1
Q ss_pred HHH-HHHHHHHHHHHHHHHhcccccch----HHHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhhhhhhcCCCCC
Q 004118 272 RMV-IFLRLIILGIFLYYRIKNPVHNA----IALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPS 346 (773)
Q Consensus 272 R~~-i~~~lv~l~~yl~wRi~~~~~~a----~~lWl~~~~~Eiwfa~~wlL~q~~kw~Pi~R~t~~drL~~r~e~~~~~~ 346 (773)
|++ +++.+++.++|++||++.+++.. ..++++++++|+++.++.++..+..+.|.+|...+. +..++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~~--------~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVPL--------PLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccCC--------CCCcc
Confidence 555 44456678999999999887643 345777999999998888888777778887754321 12346
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCc
Q 004118 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (773)
Q Consensus 347 ~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaP 426 (773)
.+|+|||+||||| |++.++.+|+.+++++|||.+++.|||+|||+++-|.....+++
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~-------------------- 185 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQ-------------------- 185 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhh--------------------
Confidence 7999999999999 99999999999999999999999999999999874432111100
Q ss_pred hhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCC
Q 004118 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (773)
Q Consensus 427 e~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g 506 (773)
+++.+-+..+.+++++. |
T Consensus 186 ---------------------------~~~~~~~~~~~~l~~~~-----------------------------------~ 203 (713)
T TIGR03030 186 ---------------------------AEAAQRREELKEFCRKL-----------------------------------G 203 (713)
T ss_pred ---------------------------hhhhhhHHHHHHHHHHc-----------------------------------C
Confidence 00000001122232110 1
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcce
Q 004118 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHV 585 (773)
Q Consensus 507 ~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcff-lDp~~g~~v 585 (773)
+.|+.|++ ++|+||||||++++. ++|+||+++|||++ +.+++|++++++| .|| ++
T Consensus 204 -----------v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 204 -----------VNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred -----------cEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 88999985 678999999999996 78999999999997 7899999999998 587 89
Q ss_pred EEEccCccccCCCCc-------ccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhc---CCCCC
Q 004118 586 CYVQFPQRFDGIDRN-------DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY---GYEPP 644 (773)
Q Consensus 586 afVQtPQrF~N~d~~-------Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALy---G~~Pp 644 (773)
++||+||.|+|.++. +++.+++.+||..++.|++.+++++++||++++||+||. |++..
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~~ 328 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAGE 328 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCCC
Confidence 999999999998753 345778899999999999999999999999999999994 56543
No 13
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=6.6e-34 Score=333.75 Aligned_cols=236 Identities=28% Similarity=0.469 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHHHHhcccccc----hHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhhhhhhcCCCCCCCC
Q 004118 274 VIFLRLIILGIFLYYRIKNPVHN----AIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLA 349 (773)
Q Consensus 274 ~i~~~lv~l~~yl~wRi~~~~~~----a~~lWl~~~~~Eiwfa~~wlL~q~~kw~Pi~R~t~~drL~~r~e~~~~~~~lP 349 (773)
++++.+++.++|++||++.+++. +..+.++++++|+++.++.++..+..+.|..|.+.+ + +...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~~--~------~~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVP--L------PKDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC--C------CcccCCCC
Confidence 45666788999999999988763 345677899999999888888877777788775421 1 11235689
Q ss_pred ceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCchhh
Q 004118 350 AVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWY 429 (773)
Q Consensus 350 ~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~Y 429 (773)
.|||+||||| ||..++.+||.+++++|||.+++.|||+|||.++- +.+++ +++
T Consensus 261 ~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~-------t~~la-------~~~---------- 313 (852)
T PRK11498 261 TVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREE-------FRQFA-------QEV---------- 313 (852)
T ss_pred cEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChH-------HHHHH-------HHC----------
Confidence 9999999999 99999999999999999999999999999999872 11111 100
Q ss_pred hhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCCC
Q 004118 430 FAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLD 509 (773)
Q Consensus 430 Fs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g~~d 509 (773)
|
T Consensus 314 ----------------------------------------------------------------------------~--- 314 (852)
T PRK11498 314 ----------------------------------------------------------------------------G--- 314 (852)
T ss_pred ----------------------------------------------------------------------------C---
Confidence 1
Q ss_pred CCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcceEEE
Q 004118 510 AEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYV 588 (773)
Q Consensus 510 ~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcff-lDp~~g~~vafV 588 (773)
+.|+.|++ +.|+||||+|++++. ++|+||+++||||+ +.+++|+++|++| .|| ++|+|
T Consensus 315 --------v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~VglV 373 (852)
T PRK11498 315 --------VKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAMM 373 (852)
T ss_pred --------cEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEEE
Confidence 77888874 567999999999996 79999999999997 8999999999875 688 89999
Q ss_pred ccCccccCCCCcc-------cchhhHHHHHHHHhhhccCCCccccccchhhhhHhhh---cCCCCC
Q 004118 589 QFPQRFDGIDRND-------RYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTAL---YGYEPP 644 (773)
Q Consensus 589 QtPQrF~N~d~~D-------ry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~AL---yG~~Pp 644 (773)
|+||.|+|.|+.. .+.++.+.||..++.|++.+++++++||++++||+|| .|++..
T Consensus 374 Qtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~~ 439 (852)
T PRK11498 374 QTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAVE 439 (852)
T ss_pred EcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHHHHhcCCCCC
Confidence 9999999987642 2457788999999999999999999999999999999 467654
No 14
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.88 E-value=8.6e-22 Score=203.69 Aligned_cols=113 Identities=21% Similarity=0.321 Sum_probs=92.4
Q ss_pred CcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCcceEEEccCccc
Q 004118 516 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQFPQRF 594 (773)
Q Consensus 516 P~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcffl-Dp~~g~~vafVQtPQrF 594 (773)
++++|+.|++ +.|+||||||+++...+ ++++||+++|||+. +.|++|++++.+|. || ++|+||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 4599999997 45689999999998532 57899999999997 78999999999886 88 89999999999
Q ss_pred cCCCCc-ccc-hhhHHHHHHHHhhhccCCCc--cccccchhhhhHhhhc
Q 004118 595 DGIDRN-DRY-ANRNTVFFDINLRGLDGIQG--PVYVGTGCVFNRTALY 639 (773)
Q Consensus 595 ~N~d~~-Dry-~n~~~vFfdvi~~GlDG~qg--p~y~GTgcv~RR~ALy 639 (773)
.|.+.. .+. .-++..|..+++.|++.|++ .+|+||+.++||+||.
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~ 184 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFM 184 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHH
Confidence 998742 111 11356677778888887654 6899999999999984
No 15
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.86 E-value=2.3e-20 Score=216.84 Aligned_cols=250 Identities=17% Similarity=0.207 Sum_probs=163.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccch---H------HHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhhhhhh
Q 004118 270 PYRMVIFLRLIILGIFLYYRIKNPVHNA---I------ALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYE 340 (773)
Q Consensus 270 ~yR~~i~~~lv~l~~yl~wRi~~~~~~a---~------~lWl~~~~~Eiwfa~~wlL~q~~kw~Pi~R~t~~drL~~r~e 340 (773)
..|+++++..++...|..|+....+... . .+-++++..+++.+.+-++..+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 4677778888888999999987655421 1 11122233333333333333222111 11111 0100000
Q ss_pred cCCCCCCCCceeEEEecCCCCCCCHHHH----HHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHH
Q 004118 341 REGEPSQLAAVDIFVSTVDPLKEPPLVT----ANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFC 416 (773)
Q Consensus 341 ~~~~~~~lP~VDVfV~T~dP~kEPp~vt----~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFC 416 (773)
.+......|.|+|+||+|| |++..+ ..|+.|+++.||| +++.+||+|||.++-+.. .|
T Consensus 116 ~~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~--~e------------ 177 (691)
T PRK05454 116 GDPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA--AE------------ 177 (691)
T ss_pred cCCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH--HH------------
Confidence 0122456899999999999 998754 4555677779998 589999999999973211 01
Q ss_pred HhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCc
Q 004118 417 KKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPG 496 (773)
Q Consensus 417 rK~~IepRaPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~ 496 (773)
+ +.++++..+.
T Consensus 178 --------------------------------~----~~~~~L~~~~--------------------------------- 188 (691)
T PRK05454 178 --------------------------------E----AAWLELRAEL--------------------------------- 188 (691)
T ss_pred --------------------------------H----HHHHHHHHhc---------------------------------
Confidence 0 1122221110
Q ss_pred ceeeeccCCCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhh
Q 004118 497 MIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM 576 (773)
Q Consensus 497 iiqv~l~~~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcff 576 (773)
+ .-+++.|..|++ +.++||||+|.+++..+ .+.+||++||||++ +.+++|++++.+|
T Consensus 189 ---------~-------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m 245 (691)
T PRK05454 189 ---------G-------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLM 245 (691)
T ss_pred ---------C-------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHH
Confidence 0 013488988875 67899999999999754 57799999999997 7899999999988
Q ss_pred c-CCCCCcceEEEccCccccCCCCcccchh----hHHHHHHHHhhhccCCCc--cccccchhhhhHhhhc
Q 004118 577 M-DPNLGKHVCYVQFPQRFDGIDRNDRYAN----RNTVFFDINLRGLDGIQG--PVYVGTGCVFNRTALY 639 (773)
Q Consensus 577 l-Dp~~g~~vafVQtPQrF~N~d~~Dry~n----~~~vFfdvi~~GlDG~qg--p~y~GTgcv~RR~ALy 639 (773)
. || ++|+||+|+.+.|.+. .++. ...++..+...|++.||+ ..|.|+|+++||+|+.
T Consensus 246 ~~dP----~vGlVQt~~~~~n~~s--lfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~ 309 (691)
T PRK05454 246 EANP----RAGLIQTLPVAVGADT--LFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFA 309 (691)
T ss_pred hhCc----CEEEEeCCccCcCCCC--HHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHH
Confidence 5 88 8999999999998763 2322 134455566788887763 5799999999999985
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=7e-18 Score=181.08 Aligned_cols=176 Identities=26% Similarity=0.338 Sum_probs=127.3
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCch
Q 004118 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPE 427 (773)
Q Consensus 348 lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe 427 (773)
+|.|+|+||++| |++.++.+|+.|++++|||. +.++|.|||+++-|++-+ ++++.+
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~--------------~~~~~~----- 108 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEIL--------------EELGAE----- 108 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHH--------------HHHHhh-----
Confidence 699999999999 99999999999999999995 899999999998444422 222100
Q ss_pred hhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCC
Q 004118 428 WYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGG 507 (773)
Q Consensus 428 ~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g~ 507 (773)
++..++
T Consensus 109 ------------------------------------------------------------------~~~~~~-------- 114 (439)
T COG1215 109 ------------------------------------------------------------------YGPNFR-------- 114 (439)
T ss_pred ------------------------------------------------------------------cCcceE--------
Confidence 000001
Q ss_pred CCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEE
Q 004118 508 LDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCY 587 (773)
Q Consensus 508 ~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vaf 587 (773)
++|. ...++.|+||+|.++.. +.+++|+++|||++ +.+++|++++..|.|+. .+|.
T Consensus 115 ----------~~~~------~~~~~gK~~al~~~l~~----~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 115 ----------VIYP------EKKNGGKAGALNNGLKR----AKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred ----------EEec------cccCccchHHHHHHHhh----cCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 1111 23678999999999996 56999999999996 89999999999999874 3479
Q ss_pred EccCccccCCCCcccchh-----hHHHHHHHHhhhccCCCccccccchhhhhHhhhc---CCCCCC
Q 004118 588 VQFPQRFDGIDRNDRYAN-----RNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY---GYEPPL 645 (773)
Q Consensus 588 VQtPQrF~N~d~~Dry~n-----~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALy---G~~Pp~ 645 (773)
+|+||.+.+.++....+. ....|+-....+.++....++.|++.++||+||. |+++..
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~~~~~~ 236 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVGGWLEDT 236 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhCCCCCCc
Confidence 999999988754111111 1222332333344444678899999999999993 355543
No 17
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.67 E-value=9.4e-16 Score=149.67 Aligned_cols=168 Identities=35% Similarity=0.525 Sum_probs=131.7
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCchh
Q 004118 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (773)
Q Consensus 349 P~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~ 428 (773)
|.|.|+|||+| |++.++..++.|+++.+||.+++.++|+|||.++-|.+-+.+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~------------------------ 53 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAE------------------------ 53 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHH------------------------
Confidence 67999999998 887889999999999999988899999999988632221100
Q ss_pred hhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCC
Q 004118 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (773)
Q Consensus 429 YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g~~ 508 (773)
+.. .
T Consensus 54 -------------------------------------~~~-------~-------------------------------- 57 (234)
T cd06421 54 -------------------------------------LGV-------E-------------------------------- 57 (234)
T ss_pred -------------------------------------hhc-------c--------------------------------
Confidence 000 0
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcC-CCCCcceEE
Q 004118 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD-PNLGKHVCY 587 (773)
Q Consensus 509 d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflD-p~~g~~vaf 587 (773)
. ++.|+.+++ +.+.|+||+|.+++. .+++||+++|+|.+ ..|++|.+.+..|.+ + +++.
T Consensus 58 ------~-~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 58 ------Y-GYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHV-PTPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred ------c-CceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccC-cCccHHHHHHHHHhcCC----CeEE
Confidence 0 145555553 445899999999995 58999999999997 588999999999976 6 7999
Q ss_pred EccCccccCCCCc----ccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhc
Q 004118 588 VQFPQRFDGIDRN----DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (773)
Q Consensus 588 VQtPQrF~N~d~~----Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALy 639 (773)
|++++.+.+.+.. ..+......|+..+..+...+...++.|++.++||++|.
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~~ 173 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREALD 173 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHHH
Confidence 9999999877654 234455666777777776666778889999999999995
No 18
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.67 E-value=2.1e-15 Score=166.31 Aligned_cols=172 Identities=21% Similarity=0.217 Sum_probs=124.8
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCc
Q 004118 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (773)
Q Consensus 347 ~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaP 426 (773)
..|.|+|+||+|| |+. .+..||.|+++.+|| ++.|+|.|||.++-|.+.+.+
T Consensus 73 ~~p~vsViIP~yN---E~~-~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~---------------------- 124 (444)
T PRK14583 73 GHPLVSILVPCFN---EGL-NARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA---------------------- 124 (444)
T ss_pred CCCcEEEEEEeCC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH----------------------
Confidence 5799999999999 875 468999999999999 599999999999854443322
Q ss_pred hhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCC
Q 004118 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (773)
Q Consensus 427 e~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g 506 (773)
+.+
T Consensus 125 ---------------------------------------~~~-------------------------------------- 127 (444)
T PRK14583 125 ---------------------------------------LLA-------------------------------------- 127 (444)
T ss_pred ---------------------------------------HHH--------------------------------------
Confidence 000
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCcce
Q 004118 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHV 585 (773)
Q Consensus 507 ~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcffl-Dp~~g~~v 585 (773)
+.|++.++.++++ ..||+|+|++++. ++++||+++|+|.+ ++|++|++.+-.|. || ++
T Consensus 128 -------~~~~v~vv~~~~n-----~Gka~AlN~gl~~----a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~~ 186 (444)
T PRK14583 128 -------EDPRLRVIHLAHN-----QGKAIALRMGAAA----ARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----RT 186 (444)
T ss_pred -------hCCCEEEEEeCCC-----CCHHHHHHHHHHh----CCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----Ce
Confidence 0022444444432 3599999999986 68999999999996 79999999998664 66 79
Q ss_pred EEEccCccccCCCCc-cc-chhhHHHHHHHHhhhccCCCccc-cccchhhhhHhhh---cCCCCC
Q 004118 586 CYVQFPQRFDGIDRN-DR-YANRNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTAL---YGYEPP 644 (773)
Q Consensus 586 afVQtPQrF~N~d~~-Dr-y~n~~~vFfdvi~~GlDG~qgp~-y~GTgcv~RR~AL---yG~~Pp 644 (773)
+.||+.++..|.... .+ ...+...++..+.++....+..+ ..|++++|||+|| .|+++.
T Consensus 187 g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~~~ 251 (444)
T PRK14583 187 GAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWSPD 251 (444)
T ss_pred EEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCCCC
Confidence 999998877654321 11 12244455666666666666654 4699999999999 356654
No 19
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.63 E-value=7.6e-15 Score=145.36 Aligned_cols=175 Identities=22% Similarity=0.297 Sum_probs=125.0
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCchh
Q 004118 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (773)
Q Consensus 349 P~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~ 428 (773)
|.|.|+||+|| |. ..+..++.|+++.+||.+++.|+|+|| +++-|++.+.+. .+ ++
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~---~~-------~~--------- 56 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREI---VE-------EY--------- 56 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHH---HH-------HH---------
Confidence 67999999998 86 577899999999999999999999998 666555544331 00 00
Q ss_pred hhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCC
Q 004118 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (773)
Q Consensus 429 YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g~~ 508 (773)
..
T Consensus 57 ----------------------------~~-------------------------------------------------- 58 (232)
T cd06437 57 ----------------------------AA-------------------------------------------------- 58 (232)
T ss_pred ----------------------------hh--------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEE
Q 004118 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (773)
Q Consensus 509 d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafV 588 (773)
.-|++.++.+.+++| +|++|+|.+++. +.++||+++|+|.+ +.|++|.+++.+|.++ ++++|
T Consensus 59 -----~~~~i~~~~~~~~~G----~k~~a~n~g~~~----a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTG----YKAGALAEGMKV----AKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCC----CchHHHHHHHHh----CCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 012367777765544 699999999995 58999999999997 6899999988888787 79999
Q ss_pred ccCccccCCCCcc--cc-hhhHHHHHHHHhhhccCCCcc-ccccchhhhhHhhh---cCCCC
Q 004118 589 QFPQRFDGIDRND--RY-ANRNTVFFDINLRGLDGIQGP-VYVGTGCVFNRTAL---YGYEP 643 (773)
Q Consensus 589 QtPQrF~N~d~~D--ry-~n~~~vFfdvi~~GlDG~qgp-~y~GTgcv~RR~AL---yG~~P 643 (773)
|....+.|.+.+- ++ .-....+|...+.+....+.. .++|++++|||++| .||++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~ 182 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTAGVWRKECIEDAGGWNH 182 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccchhhhhHHHHHHhCCCCC
Confidence 9987766654321 11 111223455545554444443 36899999999988 45654
No 20
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.57 E-value=8.6e-14 Score=150.90 Aligned_cols=171 Identities=21% Similarity=0.245 Sum_probs=121.9
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCC
Q 004118 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (773)
Q Consensus 346 ~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRa 425 (773)
...|.|.|+||++| |+ ..+..|+.|+++.+|| ++.++|.|||.++-|.+.+.+
T Consensus 51 ~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~~--------------------- 103 (420)
T PRK11204 51 KEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILDR--------------------- 103 (420)
T ss_pred CCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 46899999999998 76 6679999999999999 689999999999843332211
Q ss_pred chhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCC
Q 004118 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (773)
Q Consensus 426 Pe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~ 505 (773)
+.+
T Consensus 104 ----------------------------------------~~~------------------------------------- 106 (420)
T PRK11204 104 ----------------------------------------LAA------------------------------------- 106 (420)
T ss_pred ----------------------------------------HHH-------------------------------------
Confidence 000
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcc
Q 004118 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKH 584 (773)
Q Consensus 506 g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcff-lDp~~g~~ 584 (773)
..|++.++.++++ ..||+|+|.+++. ++++||+++|+|.+ +.|++|.+++..| .|| +
T Consensus 107 --------~~~~v~~i~~~~n-----~Gka~aln~g~~~----a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~----~ 164 (420)
T PRK11204 107 --------QIPRLRVIHLAEN-----QGKANALNTGAAA----ARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP----R 164 (420)
T ss_pred --------hCCcEEEEEcCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----C
Confidence 0133667765543 2499999999996 68999999999997 7899999999988 577 8
Q ss_pred eEEEccCccccCCCCcccchh----hHHHHHHHHhhhccCCCccc-cccchhhhhHhhh---cCCCCC
Q 004118 585 VCYVQFPQRFDGIDRNDRYAN----RNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTAL---YGYEPP 644 (773)
Q Consensus 585 vafVQtPQrF~N~d~~Dry~n----~~~vFfdvi~~GlDG~qgp~-y~GTgcv~RR~AL---yG~~Pp 644 (773)
++.||+..+..|... ..+. +...++.....+....+..+ ..|+++++||++| .|+++.
T Consensus 165 v~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~~~ 230 (420)
T PRK11204 165 VGAVTGNPRIRNRST--LLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWSTD 230 (420)
T ss_pred eEEEECCceeccchh--HHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCCCC
Confidence 999999888766432 1222 22222333333333333333 4689999999998 355543
No 21
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.56 E-value=8.5e-14 Score=139.50 Aligned_cols=174 Identities=23% Similarity=0.322 Sum_probs=124.1
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCchh
Q 004118 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (773)
Q Consensus 349 P~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~ 428 (773)
|.|.|+||++| |+ ..+..||.|+++.+||.+++.|+|.|||.++-|.+.+.+. + +
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~---~-------~----------- 55 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARAL---R-------L----------- 55 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHh---c-------c-----------
Confidence 78999999999 86 6789999999999999888999999999887444322110 0 0
Q ss_pred hhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCC
Q 004118 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (773)
Q Consensus 429 YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g~~ 508 (773)
+
T Consensus 56 ---------------------------------------------~---------------------------------- 56 (241)
T cd06427 56 ---------------------------------------------P---------------------------------- 56 (241)
T ss_pred ---------------------------------------------C----------------------------------
Confidence 0
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEE
Q 004118 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (773)
Q Consensus 509 d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafV 588 (773)
...+++++.+.+ ...|++|+|++++. +.|+||+.+|+|.+ ..+++|.+++.+|... ..++++|
T Consensus 57 -----~~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 57 -----SIFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAEDA-PDPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred -----CCeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCCC-CChHHHHHHHHHHHhc--CCCEEEE
Confidence 001144443322 13699999999995 68999999999997 6799999999988621 1389999
Q ss_pred ccCccccCCCCcc---cchhhHHHHHHHHhhhccCCCccc-cccchhhhhHhhh---cCCCC
Q 004118 589 QFPQRFDGIDRND---RYANRNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTAL---YGYEP 643 (773)
Q Consensus 589 QtPQrF~N~d~~D---ry~n~~~vFfdvi~~GlDG~qgp~-y~GTgcv~RR~AL---yG~~P 643 (773)
|.+..+++...+- .+......+|....++....+.++ +.|++.++||++| -|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~ 181 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGGTSNHFRTDVLRELGGWDP 181 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchHHhhHHHHHHcCCCCc
Confidence 9998887654321 112223344555666666665554 5789999999998 45554
No 22
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.55 E-value=1.5e-13 Score=151.85 Aligned_cols=174 Identities=17% Similarity=0.311 Sum_probs=114.9
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCC
Q 004118 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (773)
Q Consensus 345 ~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepR 424 (773)
+..+|.|+|+||+|| |. ..+.+||.|+++.+||.+++.|+|.|||+++-|.+.+.+++ ++
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~----------~~------ 104 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ----------NE------ 104 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH----------Hh------
Confidence 356899999999998 76 78899999999999999999999999999985544332210 00
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccC
Q 004118 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (773)
Q Consensus 425 aPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~ 504 (773)
+|. +
T Consensus 105 ---------------------------------------------------------------------~~~-v------ 108 (439)
T TIGR03111 105 ---------------------------------------------------------------------FPG-L------ 108 (439)
T ss_pred ---------------------------------------------------------------------CCC-e------
Confidence 000 0
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCc
Q 004118 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGK 583 (773)
Q Consensus 505 ~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcffl-Dp~~g~ 583 (773)
.++++ ++ .+.||+|+|++++. ++++||+++|+|++ +++++|++++..|. ||
T Consensus 109 ------------~v~~~--~~-----~~Gka~AlN~gl~~----s~g~~v~~~DaD~~-~~~d~L~~l~~~f~~~~---- 160 (439)
T TIGR03111 109 ------------SLRYM--NS-----DQGKAKALNAAIYN----SIGKYIIHIDSDGK-LHKDAIKNMVTRFENNP---- 160 (439)
T ss_pred ------------EEEEe--CC-----CCCHHHHHHHHHHH----ccCCEEEEECCCCC-cChHHHHHHHHHHHhCC----
Confidence 02222 11 24799999999996 68999999999997 69999999999885 66
Q ss_pred ceEEEccCccccCCCCc-------ccchhhHHHHHHHHh-----hhcc-CCCcc-ccccchhhhhHhhh---cCCCCC
Q 004118 584 HVCYVQFPQRFDGIDRN-------DRYANRNTVFFDINL-----RGLD-GIQGP-VYVGTGCVFNRTAL---YGYEPP 644 (773)
Q Consensus 584 ~vafVQtPQrF~N~d~~-------Dry~n~~~vFfdvi~-----~GlD-G~qgp-~y~GTgcv~RR~AL---yG~~Pp 644 (773)
+++.|+..+.- +.+.. .++..+. .+++... +... ..+.. ...|+++++||++| .|+++.
T Consensus 161 ~v~~v~g~~~~-~~~~~~~~~~~~~~~~~~~-~~~~y~~~~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~~ 236 (439)
T TIGR03111 161 DIHAMTGVILT-DKELIEKTKGRFLKLIRRC-EYFEYAQAFLAGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNSE 236 (439)
T ss_pred CeEEEEeEEec-CchhhhhhcchhhhHhHHh-HHHHHHHHHHhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCCC
Confidence 56666554322 11100 0111111 1222211 1111 12232 24688889999999 577654
No 23
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.52 E-value=4.2e-13 Score=132.50 Aligned_cols=110 Identities=25% Similarity=0.388 Sum_probs=76.4
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCC
Q 004118 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (773)
Q Consensus 518 lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~ 597 (773)
+.++..++.+ +.|+||+|.+++.+. .+++||+++|+|-. ..|++|.+++.+|.++ +++.||+++.+.+.
T Consensus 58 i~~i~~~~~~----G~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~ 126 (236)
T cd06435 58 FRFFHVEPLP----GAKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQAPQDYRDG 126 (236)
T ss_pred EEEEEcCCCC----CCchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEecCccccCC
Confidence 5555555433 469999999999742 46899999999986 6889999999998776 79999998776543
Q ss_pred CCcccch----hhHHHHHHHHhhhccCCCccccccchhhhhHhhhc
Q 004118 598 DRNDRYA----NRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (773)
Q Consensus 598 d~~Dry~----n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALy 639 (773)
... ++. -....+|..........+..+..|+++++||+++.
T Consensus 127 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~ 171 (236)
T cd06435 127 EES-LFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSALD 171 (236)
T ss_pred Ccc-HHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHHH
Confidence 221 111 11122233333344444556678999999999983
No 24
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.51 E-value=2.1e-13 Score=132.92 Aligned_cols=115 Identities=17% Similarity=0.067 Sum_probs=84.6
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhc-------cCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEcc
Q 004118 518 LVYVSREKRPGFQHHKKAGAMNALVRVSA-------VLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQF 590 (773)
Q Consensus 518 lvYvSReKrpg~~hh~KAGALNalLrvSa-------~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQt 590 (773)
+.++.++... ....|++|||.+++.+. .-..++||+++|+|.. ..|++|++++.+|.+| +++.||.
T Consensus 52 v~~i~~~~~~--~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~~ 124 (191)
T cd06436 52 VHLLRRHLPN--ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQS 124 (191)
T ss_pred EEEEeccCCc--CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEee
Confidence 5666654211 22369999999998641 0012489999999997 7899999999999888 7999999
Q ss_pred CccccCCCCcc--c-chhhHHHHHHHHhhhccCCCccccccchhhhhHhhhc
Q 004118 591 PQRFDGIDRND--R-YANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (773)
Q Consensus 591 PQrF~N~d~~D--r-y~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALy 639 (773)
+.++.|.+.+- + +..+...++.+++.++..++...+.|+|++|||++|.
T Consensus 125 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l~ 176 (191)
T cd06436 125 RVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSALD 176 (191)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHHH
Confidence 99998866442 1 2223444455677777777766689999999999996
No 25
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.48 E-value=1.2e-14 Score=142.49 Aligned_cols=172 Identities=30% Similarity=0.435 Sum_probs=99.7
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCchh
Q 004118 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (773)
Q Consensus 349 P~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~ 428 (773)
|.|.|+||++| |+. .+..||.|+++.+|| ++.++|+||+..+-|.+.+.+
T Consensus 1 P~v~Vvip~~~---~~~-~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~~~------------------------ 50 (228)
T PF13641_consen 1 PRVSVVIPAYN---EDD-VLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEILRA------------------------ 50 (228)
T ss_dssp --EEEE--BSS----HH-HHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTHHH------------------------
T ss_pred CEEEEEEEecC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHHHH------------------------
Confidence 78999999998 765 889999999999996 599999999988633221111
Q ss_pred hhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCC
Q 004118 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (773)
Q Consensus 429 YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g~~ 508 (773)
+.+.. +..
T Consensus 51 -------------------------------------~~~~~---~~~-------------------------------- 58 (228)
T PF13641_consen 51 -------------------------------------LAARY---PRV-------------------------------- 58 (228)
T ss_dssp -------------------------------------HHHTT---GG---------------------------------
T ss_pred -------------------------------------HHHHc---CCC--------------------------------
Confidence 11000 000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEE
Q 004118 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (773)
Q Consensus 509 d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafV 588 (773)
.+.++.+.+.+ ....|++|+|.+++. ..+++|+++|+|.+ +.|++|++++.+|.+| ++++|
T Consensus 59 --------~v~vi~~~~~~--g~~~k~~a~n~~~~~----~~~d~i~~lD~D~~-~~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 59 --------RVRVIRRPRNP--GPGGKARALNEALAA----ARGDYILFLDDDTV-LDPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----H--HHHHHHHHHHHHHHH-------SEEEEE-SSEE-E-CHHHHHHHHHHHBS----S--EE
T ss_pred --------ceEEeecCCCC--CcchHHHHHHHHHHh----cCCCEEEEECCCcE-ECHHHHHHHHHHHHhC----CCCeE
Confidence 15666665422 123799999999996 56999999999997 5899999999999887 89999
Q ss_pred ccCccccCCCCcccchhhHHHHHH----HHhhhccCCCccccccchhhhhHhhh---cCCCC
Q 004118 589 QFPQRFDGIDRNDRYANRNTVFFD----INLRGLDGIQGPVYVGTGCVFNRTAL---YGYEP 643 (773)
Q Consensus 589 QtPQrF~N~d~~Dry~n~~~vFfd----vi~~GlDG~qgp~y~GTgcv~RR~AL---yG~~P 643 (773)
|++..+++ +.+ .+...+..+|. ....+...++..++.|++++|||++| .||+|
T Consensus 120 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~ 179 (228)
T PF13641_consen 120 GGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSALEEVGGFDP 179 (228)
T ss_dssp EEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHHHHH-S--S
T ss_pred eeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHHHHhCCCCC
Confidence 98887665 322 22222222321 12334455556678999999999999 46666
No 26
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.48 E-value=1.1e-12 Score=148.52 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=118.4
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCC
Q 004118 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSIL-AVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (773)
Q Consensus 347 ~lP~VDVfV~T~dP~kEPp~vt~nTVlSil-alDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRa 425 (773)
..|.|+|+||.+| |. .++..||.++| ++||| ++.|+|.||+.++-|.+.+.+.+ +
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l~----------~-------- 119 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRLA----------A-------- 119 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHHH----------H--------
Confidence 4899999999999 86 68999999975 79997 79999999999885555443311 0
Q ss_pred chhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCC
Q 004118 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (773)
Q Consensus 426 Pe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~ 505 (773)
.||+
T Consensus 120 -------------------------------------------------------------------~~p~--------- 123 (504)
T PRK14716 120 -------------------------------------------------------------------RYPR--------- 123 (504)
T ss_pred -------------------------------------------------------------------HCCC---------
Confidence 1222
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcc--CCCC---CEEEEecCCCCCCcHHHHHHHHHhhcCCC
Q 004118 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAV--LTNG---PFLLNLDCDHYINNSKALREAMCFMMDPN 580 (773)
Q Consensus 506 g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~--ltng---pfIlnlDcDh~~nnp~~Lr~amcfflDp~ 580 (773)
+..+. ..++| .+.||+|||.+++..-. ...| ++|+++|||.+ ++|++|+....++-|
T Consensus 124 ------------v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~~-- 185 (504)
T PRK14716 124 ------------VHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLPR-- 185 (504)
T ss_pred ------------eEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcCC--
Confidence 21111 12222 35899999999985310 1134 99999999997 789999976655433
Q ss_pred CCcceEEEccCccccCCCCccc----chhhHHHHHHHHhhhccCCCccc-cccchhhhhHhhhc
Q 004118 581 LGKHVCYVQFPQRFDGIDRNDR----YANRNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTALY 639 (773)
Q Consensus 581 ~g~~vafVQtPQrF~N~d~~Dr----y~n~~~vFfdvi~~GlDG~qgp~-y~GTgcv~RR~ALy 639 (773)
.++||.|....+.+.+.. |..+...++...+..++.+++++ ++|+|++|||++|.
T Consensus 186 ----~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe 245 (504)
T PRK14716 186 ----HDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALE 245 (504)
T ss_pred ----CCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHH
Confidence 468999987665443322 22222223344466778888875 79999999999996
No 27
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.41 E-value=6.1e-12 Score=136.08 Aligned_cols=172 Identities=17% Similarity=0.228 Sum_probs=114.9
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCc
Q 004118 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (773)
Q Consensus 347 ~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaP 426 (773)
..|.|.|+||++| |.. .+..|+.|+++.|||. +.|+|.||+.++-|.+.+.+
T Consensus 39 ~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~---------------------- 90 (373)
T TIGR03472 39 AWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRR---------------------- 90 (373)
T ss_pred CCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHH----------------------
Confidence 4899999999999 875 5678999999999995 89999999888744332211
Q ss_pred hhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCC
Q 004118 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (773)
Q Consensus 427 e~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g 506 (773)
+.+ .||.
T Consensus 91 ---------------------------------------~~~------------------------~~p~---------- 97 (373)
T TIGR03472 91 ---------------------------------------LRA------------------------DFPD---------- 97 (373)
T ss_pred ---------------------------------------HHH------------------------hCCC----------
Confidence 100 0110
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceE
Q 004118 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVC 586 (773)
Q Consensus 507 ~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~va 586 (773)
.++.++....+. ..+.|++|+|++++. +.+++|+++|+|.+ +.|++|++++..|.|| +++
T Consensus 98 ---------~~i~~v~~~~~~--G~~~K~~~l~~~~~~----a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v~ 157 (373)
T TIGR03472 98 ---------ADIDLVIDARRH--GPNRKVSNLINMLPH----ARHDILVIADSDIS-VGPDYLRQVVAPLADP----DVG 157 (373)
T ss_pred ---------CceEEEECCCCC--CCChHHHHHHHHHHh----ccCCEEEEECCCCC-cChhHHHHHHHHhcCC----Ccc
Confidence 125555443332 345799999998875 68999999999997 6899999999999888 799
Q ss_pred EEccCccccCCCCcccchhh------HHHHHHHHhhhccCCCc-cccccchhhhhHhhh---cCCCC
Q 004118 587 YVQFPQRFDGIDRNDRYANR------NTVFFDINLRGLDGIQG-PVYVGTGCVFNRTAL---YGYEP 643 (773)
Q Consensus 587 fVQtPQrF~N~d~~Dry~n~------~~vFfdvi~~GlDG~qg-p~y~GTgcv~RR~AL---yG~~P 643 (773)
+|+++.+..+. .. +... +..|+...+.. ...+. .++.|++.++||++| .|++.
T Consensus 158 ~V~~~~~~~~~--~~-~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~a~RR~~l~~iGGf~~ 220 (373)
T TIGR03472 158 LVTCLYRGRPV--PG-FWSRLGAMGINHNFLPSVMVA-RALGRARFCFGATMALRRATLEAIGGLAA 220 (373)
T ss_pred eEeccccCCCC--CC-HHHHHHHHHhhhhhhHHHHHH-HhccCCccccChhhheeHHHHHHcCChHH
Confidence 99987443221 11 2111 11122211111 11222 346799999999998 45543
No 28
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.40 E-value=3.5e-12 Score=122.59 Aligned_cols=102 Identities=21% Similarity=0.114 Sum_probs=72.3
Q ss_pred ccchhhhHHHHHhhc-cCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCCCCccc---chhhH
Q 004118 532 HKKAGAMNALVRVSA-VLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDR---YANRN 607 (773)
Q Consensus 532 h~KAGALNalLrvSa-~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~d~~Dr---y~n~~ 607 (773)
..|++|||.+++... .-+++++|+++|+|.. +.|++|++++-.|.+. ...||....+.+.+.+.. +.-..
T Consensus 62 ~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~~~~~~~~~~~~~ 135 (183)
T cd06438 62 RGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPDDSWITRLYAFAF 135 (183)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCccCHHHHHHHHHH
Confidence 469999999998641 1247999999999997 6799999999988653 346888777666443211 12223
Q ss_pred HHHHHHHhhhccCCCcc-ccccchhhhhHhhhc
Q 004118 608 TVFFDINLRGLDGIQGP-VYVGTGCVFNRTALY 639 (773)
Q Consensus 608 ~vFfdvi~~GlDG~qgp-~y~GTgcv~RR~ALy 639 (773)
.+++.+...++..+++. .+.|+|.+|||++|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~ 168 (183)
T cd06438 136 LVFNRLRPLGRSNLGLSCQLGGTGMCFPWAVLR 168 (183)
T ss_pred HHHHHHHHHHHHHcCCCeeecCchhhhHHHHHH
Confidence 33444455566666664 579999999999994
No 29
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.37 E-value=5.6e-12 Score=148.15 Aligned_cols=168 Identities=17% Similarity=0.235 Sum_probs=113.2
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCC
Q 004118 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSIL-AVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (773)
Q Consensus 346 ~~lP~VDVfV~T~dP~kEPp~vt~nTVlSil-alDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepR 424 (773)
...|+|.|+||.+| |. .++.+||.+++ ++|||. +.|+|.+|+..+-|.+++.+. |++
T Consensus 60 ~~~~~vsIlVPa~n---E~-~vi~~~i~~ll~~ldYP~--~eI~vi~~~nD~~T~~~~~~l----------~~~------ 117 (727)
T PRK11234 60 PDEKPLAIMVPAWN---ET-GVIGNMAELAATTLDYEN--YHIFVGTYPNDPATQADVDAV----------CAR------ 117 (727)
T ss_pred CCCCCEEEEEecCc---ch-hhHHHHHHHHHHhCCCCC--eEEEEEecCCChhHHHHHHHH----------HHH------
Confidence 35799999999998 87 78999999987 799994 999999775555333332220 111
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccC
Q 004118 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (773)
Q Consensus 425 aPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~ 504 (773)
||.+
T Consensus 118 ---------------------------------------------------------------------~p~~------- 121 (727)
T PRK11234 118 ---------------------------------------------------------------------FPNV------- 121 (727)
T ss_pred ---------------------------------------------------------------------CCCc-------
Confidence 1111
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccC---CCC--CEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 004118 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVL---TNG--PFLLNLDCDHYINNSKALREAMCFMMDP 579 (773)
Q Consensus 505 ~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~l---tng--pfIlnlDcDh~~nnp~~Lr~amcfflDp 579 (773)
++|.+.| +| .+.||+|||.++...... +.+ ++++++|||.+ +.|++|+ .+-+|.++
T Consensus 122 ------------~~v~~~~---~g--~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~ 182 (727)
T PRK11234 122 ------------HKVVCAR---PG--PTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER 182 (727)
T ss_pred ------------EEEEeCC---CC--CCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC
Confidence 1333334 22 247999999999864111 133 46888999997 7999998 67788876
Q ss_pred CCCcceEEEccCccccCCCCcccc----hhhHHHHHHHHhhhccCCCcc-ccccchhhh-hH
Q 004118 580 NLGKHVCYVQFPQRFDGIDRNDRY----ANRNTVFFDINLRGLDGIQGP-VYVGTGCVF-NR 635 (773)
Q Consensus 580 ~~g~~vafVQtPQrF~N~d~~Dry----~n~~~vFfdvi~~GlDG~qgp-~y~GTgcv~-RR 635 (773)
. ++||.|..-.+...+... ..+....+...++++..++|+ .+.|||++| ||
T Consensus 183 ----~-~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr 239 (727)
T PRK11234 183 ----K-DLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRR 239 (727)
T ss_pred ----C-CeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecc
Confidence 4 899999663332222222 233334444667888898776 478999999 66
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.33 E-value=1.6e-11 Score=118.97 Aligned_cols=170 Identities=18% Similarity=0.262 Sum_probs=113.7
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCchhhhhh
Q 004118 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQ 432 (773)
Q Consensus 353 VfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~YFs~ 432 (773)
|+|||+| |+ ..+..||.|+++.+||.+++.|+|.|||.++-|.+.+. |+.
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~----~~~---------------------- 50 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE----FAA---------------------- 50 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH----HHH----------------------
Confidence 6899998 75 77899999999999998889999999998874333221 000
Q ss_pred hcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCCCCCC
Q 004118 433 KIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEG 512 (773)
Q Consensus 433 k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g~~d~~g 512 (773)
+ .
T Consensus 51 ------------------------------------~------~------------------------------------ 52 (229)
T cd04192 51 ------------------------------------A------K------------------------------------ 52 (229)
T ss_pred ------------------------------------h------C------------------------------------
Confidence 0 0
Q ss_pred CCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCc
Q 004118 513 NELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQ 592 (773)
Q Consensus 513 ~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQ 592 (773)
..|++.++.++. ..-..|+.++|.++.. +.++||+++|+|.+ ..|++|.+.+.+|.++ ..++|+.++
T Consensus 53 -~~~~v~~~~~~~---~~~~g~~~a~n~g~~~----~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 53 -PNFQLKILNNSR---VSISGKKNALTTAIKA----AKGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred -CCcceEEeeccC---cccchhHHHHHHHHHH----hcCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeee
Confidence 012255554442 1234788999999985 57999999999997 6899999999988765 578899988
Q ss_pred cccCCCCc-ccchhhHHHHHHHHhhhccCCCcc-ccccchhhhhHhhh---cCCCC
Q 004118 593 RFDGIDRN-DRYANRNTVFFDINLRGLDGIQGP-VYVGTGCVFNRTAL---YGYEP 643 (773)
Q Consensus 593 rF~N~d~~-Dry~n~~~vFfdvi~~GlDG~qgp-~y~GTgcv~RR~AL---yG~~P 643 (773)
.+...+.. ..+..-...+......+..+++.+ ++.|++.++||+++ .||++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~ 175 (229)
T cd04192 120 IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEG 175 (229)
T ss_pred eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCcc
Confidence 87622211 111111111122222333344444 45788899999988 56654
No 31
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.28 E-value=1.3e-10 Score=115.96 Aligned_cols=172 Identities=20% Similarity=0.222 Sum_probs=115.1
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCC
Q 004118 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (773)
Q Consensus 345 ~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepR 424 (773)
....|.|.|+|||+| |. ..+..++.|+++.+||.+++.++|+|||+++-|.+.+.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~-------------------- 80 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE-------------------- 80 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH--------------------
Confidence 356899999999998 65 677899999999999988899999999998743332211
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccC
Q 004118 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (773)
Q Consensus 425 aPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~ 504 (773)
+.+
T Consensus 81 -----------------------------------------~~~------------------------------------ 83 (251)
T cd06439 81 -----------------------------------------YAD------------------------------------ 83 (251)
T ss_pred -----------------------------------------Hhh------------------------------------
Confidence 000
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcc
Q 004118 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKH 584 (773)
Q Consensus 505 ~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~ 584 (773)
. .+.++..+++ ..|++|+|.+++. +++++|+++|+|.++ .+++|++.+..|.++ +
T Consensus 84 ---------~--~v~~i~~~~~-----~g~~~a~n~gi~~----a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 84 ---------K--GVKLLRFPER-----RGKAAALNRALAL----ATGEIVVFTDANALL-DPDALRLLVRHFADP----S 138 (251)
T ss_pred ---------C--cEEEEEcCCC-----CChHHHHHHHHHH----cCCCEEEEEccccCc-CHHHHHHHHHHhcCC----C
Confidence 0 1334444432 3589999999996 578999999999985 699999999999776 6
Q ss_pred eEEEccCccccCCCCcccchhh-HHHHHHHHhhhccCCCc-cccccchhhhhHhhhcCCCC
Q 004118 585 VCYVQFPQRFDGIDRNDRYANR-NTVFFDINLRGLDGIQG-PVYVGTGCVFNRTALYGYEP 643 (773)
Q Consensus 585 vafVQtPQrF~N~d~~Dry~n~-~~vFfdvi~~GlDG~qg-p~y~GTgcv~RR~ALyG~~P 643 (773)
+++|++...+.+.+. ...... ...|...+.......+. ....|++.++||+++.|++.
T Consensus 139 ~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~~~ 198 (251)
T cd06439 139 VGAVSGELVIVDGGG-SGSGEGLYWKYENWLKRAESRLGSTVGANGAIYAIRRELFRPLPA 198 (251)
T ss_pred ccEEEeEEEecCCcc-cchhHHHHHHHHHHHHHHHHhcCCeeeecchHHHhHHHHhcCCCc
Confidence 889998777654432 111111 11111111111111222 23455666689999986644
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.27 E-value=9.3e-11 Score=115.30 Aligned_cols=98 Identities=19% Similarity=0.182 Sum_probs=69.3
Q ss_pred ccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCCCCcccchhhHHHHH
Q 004118 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFF 611 (773)
Q Consensus 532 h~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~d~~Dry~n~~~vFf 611 (773)
..|++|+|.+++. +.++||+++|+|.+ +.+++|++++..|.++ +++.|+..+.+.+.+.. .+......++
T Consensus 63 ~g~~~a~n~g~~~----a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~~~-~~~~~~~~~~ 132 (235)
T cd06434 63 PGKRRALAEGIRH----VTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPRDS-KWSFLAAEYL 132 (235)
T ss_pred CChHHHHHHHHHH----hCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCccc-HHHHHHHHHH
Confidence 4599999999986 58999999999997 6899999999999887 89999999988776422 1111111111
Q ss_pred HH----HhhhccCCCc-cccccchhhhhHhhhc
Q 004118 612 DI----NLRGLDGIQG-PVYVGTGCVFNRTALY 639 (773)
Q Consensus 612 dv----i~~GlDG~qg-p~y~GTgcv~RR~ALy 639 (773)
.. ........++ ....|...++||++|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~ 165 (235)
T cd06434 133 ERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILK 165 (235)
T ss_pred HHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHh
Confidence 11 1122222333 3356888899999995
No 33
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.25 E-value=5.8e-11 Score=115.61 Aligned_cols=137 Identities=18% Similarity=0.168 Sum_probs=101.9
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCchh
Q 004118 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (773)
Q Consensus 349 P~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~ 428 (773)
|.|.|+||++| |.. .+..++-|+++.+||. +.++|.|||+++-|.+.+.+. + ++
T Consensus 1 p~vsviip~~n---~~~-~l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~~---~-------~~---------- 54 (196)
T cd02520 1 PGVSILKPLCG---VDP-NLYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRKL---I-------AK---------- 54 (196)
T ss_pred CCeEEEEecCC---CCc-cHHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHHH---H-------HH----------
Confidence 67999999999 665 4678999999999995 999999999998444322210 0 00
Q ss_pred hhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCC
Q 004118 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (773)
Q Consensus 429 YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g~~ 508 (773)
||.+
T Consensus 55 -----------------------------------------------------------------~~~~----------- 58 (196)
T cd02520 55 -----------------------------------------------------------------YPNV----------- 58 (196)
T ss_pred -----------------------------------------------------------------CCCC-----------
Confidence 0000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEE
Q 004118 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (773)
Q Consensus 509 d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafV 588 (773)
.+.|+...++.| ...|++|||.+++. +.++||+++|+|.. ..|++|.+++-.|.++ .+++|
T Consensus 59 --------~~~~~~~~~~~g--~~~~~~~~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v 119 (196)
T cd02520 59 --------DARLLIGGEKVG--INPKVNNLIKGYEE----ARYDILVISDSDIS-VPPDYLRRMVAPLMDP----GVGLV 119 (196)
T ss_pred --------cEEEEecCCcCC--CCHhHHHHHHHHHh----CCCCEEEEECCCce-EChhHHHHHHHHhhCC----CCCeE
Confidence 033443333212 33689999999995 68999999999997 6889999999988887 67888
Q ss_pred ccCccccCCCCcccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhc
Q 004118 589 QFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (773)
Q Consensus 589 QtPQrF~N~d~~Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALy 639 (773)
+.. +..|+++++||+++.
T Consensus 120 ~~~---------------------------------~~~g~~~~~r~~~~~ 137 (196)
T cd02520 120 TCL---------------------------------CAFGKSMALRREVLD 137 (196)
T ss_pred Eee---------------------------------cccCceeeeEHHHHH
Confidence 865 567899999999995
No 34
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.15 E-value=9.1e-10 Score=129.11 Aligned_cols=101 Identities=19% Similarity=0.266 Sum_probs=73.5
Q ss_pred ccchhhhHHHHHhh---ccCCCCCE--EEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCcc-ccCCCCc---cc
Q 004118 532 HKKAGAMNALVRVS---AVLTNGPF--LLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQR-FDGIDRN---DR 602 (773)
Q Consensus 532 h~KAGALNalLrvS---a~ltngpf--IlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQr-F~N~d~~---Dr 602 (773)
..||.|||.++... .-.+.+.| |+++|||-+ ++|++|+. |-|+++. --+||.|=. ..|...+ -.
T Consensus 140 ~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~-~~~~~~~-----~~~iQ~pV~~~~~~~~~~l~~~ 212 (703)
T PRK15489 140 TCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY-FNYLLPR-----KDLVQLPVLSLERKWYEWVAGT 212 (703)
T ss_pred CCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH-HHhhcCC-----cceeeeeeccCCCccccHHHHH
Confidence 47999999999853 11234555 999999996 89999975 4666643 137998721 2222111 23
Q ss_pred chhhHHHHHHHHhhhccCCCccc-cccchhhhhHhhhc
Q 004118 603 YANRNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTALY 639 (773)
Q Consensus 603 y~n~~~vFfdvi~~GlDG~qgp~-y~GTgcv~RR~ALy 639 (773)
|..+....|...++++..+++++ ..|||+.|||+||.
T Consensus 213 ~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~ 250 (703)
T PRK15489 213 YMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALL 250 (703)
T ss_pred HHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHH
Confidence 77788888899999999999987 58899999999974
No 35
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.13 E-value=1.4e-10 Score=117.80 Aligned_cols=89 Identities=16% Similarity=0.066 Sum_probs=59.4
Q ss_pred CCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcceEEEccCccccCCCCccc--chh-hHHHHHHHHhhhccCCCc
Q 004118 548 LTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQRFDGIDRNDR--YAN-RNTVFFDINLRGLDGIQG 623 (773)
Q Consensus 548 ltngpfIlnlDcDh~~nnp~~Lr~amcff-lDp~~g~~vafVQtPQrF~N~d~~Dr--y~n-~~~vFfdvi~~GlDG~qg 623 (773)
.++++||+++|+|.+ ..+++|++++-.| .|| +++.||..+...|...+-. +.+ +...++.....+...++.
T Consensus 71 ~a~~e~i~~~DaD~~-~~~~~l~~l~~~~~~~p----~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~ 145 (244)
T cd04190 71 PDDPEFILLVDADTK-FDPDSIVQLYKAMDKDP----EIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGF 145 (244)
T ss_pred cCCCCEEEEECCCCc-CCHhHHHHHHHHHHhCC----CEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCc
Confidence 368999999999997 6899999999888 588 7999999988776532211 111 011111111122233333
Q ss_pred -cccccchhhhhHhhhcCC
Q 004118 624 -PVYVGTGCVFNRTALYGY 641 (773)
Q Consensus 624 -p~y~GTgcv~RR~ALyG~ 641 (773)
.+..|++.+|||++|...
T Consensus 146 ~~~~~G~~~~~R~~~l~~~ 164 (244)
T cd04190 146 VTCLPGCFSMYRIEALKGD 164 (244)
T ss_pred eEECCCceEEEEehhhcCC
Confidence 446799999999999754
No 36
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.11 E-value=2.1e-09 Score=117.02 Aligned_cols=136 Identities=24% Similarity=0.237 Sum_probs=94.2
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCC
Q 004118 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (773)
Q Consensus 345 ~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepR 424 (773)
+...|.|.|+||++| |. ..+..++-|+++.+||. .+.|+|.|||.++-|.+.+.+. + +++
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~~---~-------~~~----- 95 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARAA---A-------RAY----- 95 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHHH---H-------Hhc-----
Confidence 356899999999999 76 66789999999999995 5899999999998544322220 0 000
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccC
Q 004118 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (773)
Q Consensus 425 aPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~ 504 (773)
+.
T Consensus 96 -------------------------------------------------~~----------------------------- 97 (384)
T TIGR03469 96 -------------------------------------------------GR----------------------------- 97 (384)
T ss_pred -------------------------------------------------CC-----------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCC-CCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCc
Q 004118 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLT-NGPFLLNLDCDHYINNSKALREAMCFMMDPNLGK 583 (773)
Q Consensus 505 ~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~lt-ngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~ 583 (773)
-+++.++..+..| ..-..|+.|||.+++.+.... .+++|+.+|+|.. ..|++|++++-.+.++
T Consensus 98 ----------~~~i~vi~~~~~~-~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLP-PGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred ----------CCcEEEecCCCCC-CCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 0124444433222 133578899999999743221 2899999999997 6899999999998765
Q ss_pred ceEEEccCccc
Q 004118 584 HVCYVQFPQRF 594 (773)
Q Consensus 584 ~vafVQtPQrF 594 (773)
++++|...-++
T Consensus 162 ~~~~vs~~~~~ 172 (384)
T TIGR03469 162 GLDLVSLMVRL 172 (384)
T ss_pred CCCEEEecccc
Confidence 35556544333
No 37
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.02 E-value=3.5e-09 Score=101.62 Aligned_cols=165 Identities=21% Similarity=0.288 Sum_probs=106.0
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCchh
Q 004118 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (773)
Q Consensus 349 P~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~ 428 (773)
|.|.|+|||++ |.+..+.+|+.|+++..|| .+.|+|+|||.++-+.+.+.+
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~--~~eiivvd~gs~d~~~~~~~~------------------------ 51 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYP--NWELCIADDASTDPEVKRVLK------------------------ 51 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCChHHHHHHH------------------------
Confidence 67999999998 6667889999999999998 478999999987632222211
Q ss_pred hhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCC
Q 004118 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (773)
Q Consensus 429 YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g~~ 508 (773)
. +..+
T Consensus 52 --------------------------~----------~~~~--------------------------------------- 56 (202)
T cd04184 52 --------------------------K----------YAAQ--------------------------------------- 56 (202)
T ss_pred --------------------------H----------HHhc---------------------------------------
Confidence 0 0000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcceEE
Q 004118 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCY 587 (773)
Q Consensus 509 d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcff-lDp~~g~~vaf 587 (773)
.+++.++..+. ...++.|+|.+++. +.++||+++|+|.+ +.+++|.+++-.| .++ ++++
T Consensus 57 ------~~~~~~~~~~~-----~~g~~~a~n~g~~~----a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~ 116 (202)
T cd04184 57 ------DPRIKVVFREE-----NGGISAATNSALEL----ATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADL 116 (202)
T ss_pred ------CCCEEEEEccc-----CCCHHHHHHHHHHh----hcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCE
Confidence 01244444443 23578999999996 57899999999997 7899999999988 666 5677
Q ss_pred EccCccccCCCCcccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhc---CCCC
Q 004118 588 VQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY---GYEP 643 (773)
Q Consensus 588 VQtPQrF~N~d~~Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALy---G~~P 643 (773)
|.+...+...+.. .+.. .+.... ..+......+.|.+.++||+++. ||++
T Consensus 117 v~~~~~~~~~~~~-~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~iggf~~ 169 (202)
T cd04184 117 IYSDEDKIDEGGK-RSEP----FFKPDW-SPDLLLSQNYIGHLLVYRRSLVRQVGGFRE 169 (202)
T ss_pred EEccHHhccCCCC-Eecc----ccCCCC-CHHHhhhcCCccceEeEEHHHHHHhCCCCc
Confidence 7766554332111 0000 000000 00111122355677789999994 5644
No 38
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.01 E-value=1.7e-10 Score=93.14 Aligned_cols=48 Identities=31% Similarity=0.941 Sum_probs=30.3
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 20 C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
|.+|.+++ +++|..|.+| +|+|.|||.||...++++++.||.||++|+
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 67899997 8899999999 999999999999999889999999999996
No 39
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.01 E-value=2.3e-09 Score=103.05 Aligned_cols=100 Identities=16% Similarity=0.082 Sum_probs=62.8
Q ss_pred ccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcceEEEccCccccCCCCcccchhhHHHH
Q 004118 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVF 610 (773)
Q Consensus 532 h~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcff-lDp~~g~~vafVQtPQrF~N~d~~Dry~n~~~vF 610 (773)
+.+++|+|.++.. ++++||+++|+|-+ ..|++|.+.+-.+ .++ ..+++.+...+.+.+.. .........
T Consensus 65 ~G~~~~~n~g~~~----~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~ 134 (214)
T cd04196 65 LGVARNFESLLQA----ADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYSDLELVDENGN-PIGESFFEY 134 (214)
T ss_pred ccHHHHHHHHHHh----CCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEecCcEEECCCCC-Ccccccccc
Confidence 3589999999885 68999999999997 5799999999984 555 67778887655433221 000000000
Q ss_pred HHH--HhhhccCCCccccccchhhhhHhhhcCC
Q 004118 611 FDI--NLRGLDGIQGPVYVGTGCVFNRTALYGY 641 (773)
Q Consensus 611 fdv--i~~GlDG~qgp~y~GTgcv~RR~ALyG~ 641 (773)
... ......-.....+.|+++++||+++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 167 (214)
T cd04196 135 QKIKPGTSFNNLLFQNVVTGCTMAFNRELLELA 167 (214)
T ss_pred cccCCccCHHHHHHhCccCCceeeEEHHHHHhh
Confidence 000 0001111123356788999999999654
No 40
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.00 E-value=6e-09 Score=93.87 Aligned_cols=107 Identities=28% Similarity=0.352 Sum_probs=65.6
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHH-hhcCCCCCcceEEEccCccccC
Q 004118 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC-FMMDPNLGKHVCYVQFPQRFDG 596 (773)
Q Consensus 518 lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amc-fflDp~~g~~vafVQtPQrF~N 596 (773)
++|+..++. ..|+.|+|.+++. +++++|+++|+|.+ ..+++|.+.+. ++.++ +++.|.......+
T Consensus 55 ~~~~~~~~~-----~g~~~~~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~~~~ 120 (180)
T cd06423 55 VLVVRDKEN-----GGKAGALNAGLRH----AKGDIVVVLDADTI-LEPDALKRLVVPFFADP----KVGAVQGRVRVRN 120 (180)
T ss_pred EEEEEeccc-----CCchHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHhccCC----CeeeEeeeEEEec
Confidence 445555543 3589999999996 48999999999997 57899999954 55555 5666665554443
Q ss_pred CCCcccchhhHH-HH---HHHHhhhccCC-CccccccchhhhhHhhhc
Q 004118 597 IDRNDRYANRNT-VF---FDINLRGLDGI-QGPVYVGTGCVFNRTALY 639 (773)
Q Consensus 597 ~d~~Dry~n~~~-vF---fdvi~~GlDG~-qgp~y~GTgcv~RR~ALy 639 (773)
...+ .+..... .| +.....+.... .-..+.|++.++||++|.
T Consensus 121 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 167 (180)
T cd06423 121 GSEN-LLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREALR 167 (180)
T ss_pred CcCc-ceeccchheecceeeeeeehhheecceeecCchHHHHHHHHHH
Confidence 3311 1111111 11 11111111111 225679999999999994
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.00 E-value=1e-08 Score=98.65 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=67.7
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCcceEEEccCccccC
Q 004118 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQFPQRFDG 596 (773)
Q Consensus 518 lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcffl-Dp~~g~~vafVQtPQrF~N 596 (773)
+.|+.+++. ..+++|+|.+++. +.|+||+++|+|.+ ..|++|.+++.+|. +| ++++|.......+
T Consensus 57 i~~i~~~~n-----~G~~~a~N~g~~~----a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 122 (201)
T cd04195 57 LKVVPLEKN-----RGLGKALNEGLKH----CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEFD 122 (201)
T ss_pred eEEEEcCcc-----ccHHHHHHHHHHh----cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEEC
Confidence 555665543 3579999999995 68999999999997 67999999999885 55 6888888766554
Q ss_pred CCCcccc----hhhHHHHHHHHhhhccCCCccccccchhhhhHhhhc
Q 004118 597 IDRNDRY----ANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (773)
Q Consensus 597 ~d~~Dry----~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALy 639 (773)
.+..... .....-++.... ....+.|.+.++||+++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~rr~~~~ 163 (201)
T cd04195 123 SDGNDIGKRRLPTSHDDILKFAR------RRSPFNHPTVMFRKSKVL 163 (201)
T ss_pred CCCCeeccccCCCCHHHHHHHhc------cCCCCCChHHhhhHHHHH
Confidence 4332111 111111222111 122346677899999984
No 42
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.92 E-value=9.8e-10 Score=99.52 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=75.3
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCC
Q 004118 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (773)
Q Consensus 518 lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~ 597 (773)
+.|+.+++. . .+++|+|.+++. +.++||+.+|+|.+ ..+++|.+.+-++.+. +..+.+...+....+.
T Consensus 55 i~~i~~~~n----~-g~~~~~n~~~~~----a~~~~i~~ld~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~ 122 (169)
T PF00535_consen 55 IRYIRNPEN----L-GFSAARNRGIKH----AKGEYILFLDDDDI-ISPDWLEELVEALEKN--PPDVVIGSVIYIDDDN 122 (169)
T ss_dssp EEEEEHCCC----S-HHHHHHHHHHHH------SSEEEEEETTEE-E-TTHHHHHHHHHHHC--TTEEEEEEEEEEECTT
T ss_pred ccccccccc----c-cccccccccccc----cceeEEEEeCCCce-EcHHHHHHHHHHHHhC--CCcEEEEEEEEecCCc
Confidence 888888852 2 799999999996 68889999999998 5667999999999873 1244444444444333
Q ss_pred CCcccch--hhHHHHHHHHhhhccCCCccccccchhhhhHhhhc
Q 004118 598 DRNDRYA--NRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (773)
Q Consensus 598 d~~Dry~--n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALy 639 (773)
....... .....++.............+++|.++++||++|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 166 (169)
T PF00535_consen 123 RYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFE 166 (169)
T ss_dssp ETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHH
T ss_pred cccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHH
Confidence 3222211 12234444555566667788999999999999984
No 43
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=98.89 E-value=1.9e-08 Score=98.96 Aligned_cols=117 Identities=20% Similarity=0.252 Sum_probs=86.4
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCchhhh
Q 004118 351 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYF 430 (773)
Q Consensus 351 VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~YF 430 (773)
|.|+|||+| |+ ..+.+|+-|+++.+||..++.++|+|||++.-|.+-+.
T Consensus 2 ~sIiip~~n---~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~--------------------------- 50 (249)
T cd02525 2 VSIIIPVRN---EE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQ--------------------------- 50 (249)
T ss_pred EEEEEEcCC---ch-hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHH---------------------------
Confidence 789999998 76 56799999999999997789999999998872211110
Q ss_pred hhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCCCC
Q 004118 431 AQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDA 510 (773)
Q Consensus 431 s~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g~~d~ 510 (773)
.+.+
T Consensus 51 ----------------------------------~~~~------------------------------------------ 54 (249)
T cd02525 51 ----------------------------------EYAA------------------------------------------ 54 (249)
T ss_pred ----------------------------------HHHh------------------------------------------
Confidence 0100
Q ss_pred CCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEcc
Q 004118 511 EGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQF 590 (773)
Q Consensus 511 ~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQt 590 (773)
..|.+.++..+ ...+++|+|.+++. ++++||+++|+|.+ ..|++|.+++-++.++ ++..|+.
T Consensus 55 ---~~~~v~~i~~~------~~~~~~a~N~g~~~----a~~d~v~~lD~D~~-~~~~~l~~~~~~~~~~----~~~~v~~ 116 (249)
T cd02525 55 ---KDPRIRLIDNP------KRIQSAGLNIGIRN----SRGDIIIRVDAHAV-YPKDYILELVEALKRT----GADNVGG 116 (249)
T ss_pred ---cCCeEEEEeCC------CCCchHHHHHHHHH----hCCCEEEEECCCcc-CCHHHHHHHHHHHhcC----CCCEEec
Confidence 01235555433 13578999999996 58999999999997 6899999999888776 4555655
Q ss_pred Cc
Q 004118 591 PQ 592 (773)
Q Consensus 591 PQ 592 (773)
+-
T Consensus 117 ~~ 118 (249)
T cd02525 117 PM 118 (249)
T ss_pred ce
Confidence 53
No 44
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.84 E-value=1.1e-07 Score=96.09 Aligned_cols=109 Identities=14% Similarity=0.031 Sum_probs=65.5
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCC
Q 004118 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (773)
Q Consensus 518 lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~ 597 (773)
+.++.+.+.. .|++|+|++++. +.|+||+.+|+|.. .+|++|.+++-.+.+. +..+|... +|.+.
T Consensus 70 v~~~~~~~n~-----G~~~a~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~-r~~~~ 134 (243)
T PLN02726 70 ILLRPRPGKL-----GLGTAYIHGLKH----ASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTGT-RYVKG 134 (243)
T ss_pred EEEEecCCCC-----CHHHHHHHHHHH----cCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEEc-cccCC
Confidence 4455544322 478999999985 68999999999997 7899999999888664 35556554 33321
Q ss_pred CCcc---cchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhcCC
Q 004118 598 DRND---RYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGY 641 (773)
Q Consensus 598 d~~D---ry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALyG~ 641 (773)
.... .+-.....++.....-.-+.+..-..|...++||+++.-+
T Consensus 135 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~g~~~~~rr~~~~~i 181 (243)
T PLN02726 135 GGVHGWDLRRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKRSALEDL 181 (243)
T ss_pred CCcCCccHHHHHHHHHHHHHHHHHhCCCCCcCCCcccceeHHHHHHH
Confidence 1111 1111111222332222223333445566668899998644
No 45
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.77 E-value=9e-08 Score=90.46 Aligned_cols=110 Identities=14% Similarity=0.120 Sum_probs=67.5
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCC
Q 004118 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (773)
Q Consensus 518 lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~ 597 (773)
+.++..+++. .|++|+|.+++. +.+++|+++|+|-. ..|++|.+.+-.+... ...+|+.+..+.+.
T Consensus 56 ~~~~~~~~n~-----G~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~~ 121 (185)
T cd04179 56 VRVIRLSRNF-----GKGAAVRAGFKA----ARGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSRFVRGG 121 (185)
T ss_pred eEEEEccCCC-----CccHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeecCCC
Confidence 4455555443 399999999985 67899999999996 5899999999986654 46677777665543
Q ss_pred CCcc-cchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhcCC
Q 004118 598 DRND-RYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGY 641 (773)
Q Consensus 598 d~~D-ry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALyG~ 641 (773)
.... .+.....-.+......+.+.......|...++||++|.-+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i 166 (185)
T cd04179 122 GAGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEAL 166 (185)
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHH
Confidence 2111 1111111111111122223333344555568999999654
No 46
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.76 E-value=1.8e-07 Score=91.29 Aligned_cols=99 Identities=12% Similarity=0.061 Sum_probs=60.3
Q ss_pred cchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCCCCcccchhhHHH---
Q 004118 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTV--- 609 (773)
Q Consensus 533 ~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~d~~Dry~n~~~v--- 609 (773)
.+++|+|.+++. +.++||+.+|+|.. ..|++|...+..|.++ +..+|..+..... .....+......
T Consensus 65 G~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~-~~~~~~~~~~~~~~~ 134 (224)
T cd06442 65 GLGSAYIEGFKA----ARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGSRYVEG-GGVEGWGLKRKLISR 134 (224)
T ss_pred ChHHHHHHHHHH----cCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEeeeecC-CccCCCcHHHHHHHH
Confidence 589999999996 57899999999996 6899999999997765 3455655533222 111111111000
Q ss_pred HHHHHhhhccCCCccccccchhhhhHhhhcCC
Q 004118 610 FFDINLRGLDGIQGPVYVGTGCVFNRTALYGY 641 (773)
Q Consensus 610 Ffdvi~~GlDG~qgp~y~GTgcv~RR~ALyG~ 641 (773)
.......-.-+.+.....|+..++||++|..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i 166 (224)
T cd06442 135 GANLLARLLLGRKVSDPTSGFRAYRREVLEKL 166 (224)
T ss_pred HHHHHHHHHcCCCCCCCCCccchhhHHHHHHH
Confidence 11111111122333455666678999999554
No 47
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=98.74 E-value=1.4e-07 Score=89.14 Aligned_cols=78 Identities=17% Similarity=0.277 Sum_probs=56.0
Q ss_pred cchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCCCCcccchhhHHHHHH
Q 004118 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFD 612 (773)
Q Consensus 533 ~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~d~~Dry~n~~~vFfd 612 (773)
.+++|+|.+++. +.++||+++|+|-+ +.+++|.+.+-++ ++ .++ |..++...+.+...
T Consensus 66 ~~~~~~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~----~~~-v~g~~~~~~~~~~~----------- 123 (182)
T cd06420 66 RKAKIRNKAIAA----AKGDYLIFIDGDCI-PHPDFIADHIELA-EP----GVF-LSGSRVLLNEKLTE----------- 123 (182)
T ss_pred hHHHHHHHHHHH----hcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC----CcE-Eecceeecccccce-----------
Confidence 689999999995 68999999999997 6899999999887 44 344 44444433322211
Q ss_pred HHhhhccCCCccccccchhhhhHhhhc---CCCC
Q 004118 613 INLRGLDGIQGPVYVGTGCVFNRTALY---GYEP 643 (773)
Q Consensus 613 vi~~GlDG~qgp~y~GTgcv~RR~ALy---G~~P 643 (773)
..+.|++++++|+++. ||++
T Consensus 124 -----------~~~~~~~~~~~r~~~~~~ggf~~ 146 (182)
T cd06420 124 -----------RGIRGCNMSFWKKDLLAVNGFDE 146 (182)
T ss_pred -----------eEeccceEEEEHHHHHHhCCCCc
Confidence 3456777788888774 6654
No 48
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.73 E-value=1.1e-07 Score=89.55 Aligned_cols=93 Identities=17% Similarity=0.045 Sum_probs=60.3
Q ss_pred cchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHH-hhcCCCCCcceEEEccCccccCCCCcccchhhHHHHH
Q 004118 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC-FMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFF 611 (773)
Q Consensus 533 ~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amc-fflDp~~g~~vafVQtPQrF~N~d~~Dry~n~~~vFf 611 (773)
.+++|+|.+++. +.++||+++|+|-+ ..++.+.+.+- +..++ ++.+|.....+.+.+........
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~-~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~~~~~~~~~~~~----- 127 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDT-LLPGALLAVVAAFAEHP----EVDVVYGDVLLVDENGRVIGRRR----- 127 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCcc-cCchHHHHHHHHHHhCC----CccEEEeeeEEEcCCCCcccCCC-----
Confidence 479999999995 68999999999997 56789999984 44565 56677766555443322111000
Q ss_pred HHHhhhccCCCccccccchhhhhHhhhc
Q 004118 612 DINLRGLDGIQGPVYVGTGCVFNRTALY 639 (773)
Q Consensus 612 dvi~~GlDG~qgp~y~GTgcv~RR~ALy 639 (773)
.............+..|++.++||+++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (202)
T cd06433 128 PPPFLDKFLLYGMPICHQATFFRRSLFE 155 (202)
T ss_pred CcchhhhHHhhcCcccCcceEEEHHHHH
Confidence 0001111222334567888899999994
No 49
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.64 E-value=4.9e-07 Score=88.08 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=57.2
Q ss_pred cchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCCCCcccchhhHHHHHH
Q 004118 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFD 612 (773)
Q Consensus 533 ~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~d~~Dry~n~~~vFfd 612 (773)
.+++|+|.++.. ..+++|+++|+|.+ +.+++|.+++-.+.++ .+..+.....+.+.....++ +.
T Consensus 59 g~~~a~n~g~~~----a~~~~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~-------~~ 122 (221)
T cd02522 59 GRARQMNAGAAA----ARGDWLLFLHADTR-LPPDWDAAIIETLRAD----GAVAGAFRLRFDDPGPRLRL-------LE 122 (221)
T ss_pred CHHHHHHHHHHh----ccCCEEEEEcCCCC-CChhHHHHHHHHhhcC----CcEEEEEEeeecCCccchhh-------hh
Confidence 378999999985 56999999999997 5789999986666544 33344433344333211111 11
Q ss_pred HHhhhccCCCccccccchhhhhHhhhc---CCCC
Q 004118 613 INLRGLDGIQGPVYVGTGCVFNRTALY---GYEP 643 (773)
Q Consensus 613 vi~~GlDG~qgp~y~GTgcv~RR~ALy---G~~P 643 (773)
..........+..+.+.+.++||+++. ||++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~fd~ 156 (221)
T cd02522 123 LGANLRSRLFGLPYGDQGLFIRRELFEELGGFPE 156 (221)
T ss_pred hcccceecccCCCcCCceEEEEHHHHHHhCCCCc
Confidence 111112222233455667888999884 5544
No 50
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.62 E-value=4.1e-07 Score=83.42 Aligned_cols=65 Identities=23% Similarity=0.181 Sum_probs=54.0
Q ss_pred ccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCcceEEEccCccccCCCCcccchhhHHHH
Q 004118 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVF 610 (773)
Q Consensus 532 h~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcffl-Dp~~g~~vafVQtPQrF~N~d~~Dry~n~~~vF 610 (773)
..+++|+|.+++. .++++|+.+|+|.+ +.+++|.+.+-.+. .+ ++++|...
T Consensus 60 ~g~~~a~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~~~~~------------------- 111 (166)
T cd04186 60 LGFGAGNNQGIRE----AKGDYVLLLNPDTV-VEPGALLELLDAAEQDP----DVGIVGPK------------------- 111 (166)
T ss_pred cChHHHhhHHHhh----CCCCEEEEECCCcE-ECccHHHHHHHHHHhCC----CceEEEcc-------------------
Confidence 3589999999996 48999999999997 67899999998654 44 67777665
Q ss_pred HHHHhhhccCCCccccccchhhhhHhhhc
Q 004118 611 FDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (773)
Q Consensus 611 fdvi~~GlDG~qgp~y~GTgcv~RR~ALy 639 (773)
+.|.+.++||+++.
T Consensus 112 ---------------~~~~~~~~~~~~~~ 125 (166)
T cd04186 112 ---------------VSGAFLLVRREVFE 125 (166)
T ss_pred ---------------CceeeEeeeHHHHH
Confidence 78899999999985
No 51
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.60 E-value=8.7e-07 Score=84.52 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=62.8
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCC
Q 004118 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (773)
Q Consensus 518 lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~ 597 (773)
+.|+..++. ..|++|+|.+++. +.+++|+.+|+|.. ..+++|.+++-.+ ++ +.++.+.... ..+
T Consensus 57 i~~i~~~~n-----~G~~~a~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~~-~~--~~~~v~g~~~--~~~- 120 (181)
T cd04187 57 VKVIRLSRN-----FGQQAALLAGLDH----ARGDAVITMDADLQ-DPPELIPEMLAKW-EE--GYDVVYGVRK--NRK- 120 (181)
T ss_pred EEEEEecCC-----CCcHHHHHHHHHh----cCCCEEEEEeCCCC-CCHHHHHHHHHHH-hC--CCcEEEEEec--CCc-
Confidence 555554432 3589999999996 57899999999997 6899999999874 33 1234433322 222
Q ss_pred CC-cccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhc
Q 004118 598 DR-NDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (773)
Q Consensus 598 d~-~Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALy 639 (773)
+. .-++.+ ..|+. ......+..-+...|+..++||+++.
T Consensus 121 ~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 ESWLKRLTS--KLFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred chHHHHHHH--HHHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 11 111111 12221 12222334445677888899999994
No 52
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=98.58 E-value=4.7e-07 Score=94.40 Aligned_cols=109 Identities=21% Similarity=0.171 Sum_probs=82.4
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCchhhhhh
Q 004118 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQ 432 (773)
Q Consensus 353 VfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~YFs~ 432 (773)
|+|||+| |++..+..||.|+++..||.....|+|.|||.++-|.+.+.+ .+.
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~--~~~----------------------- 53 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE--EYY----------------------- 53 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH--HHH-----------------------
Confidence 8999999 887899999999999999865679999999998744442221 000
Q ss_pred hcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCCCCCC
Q 004118 433 KIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEG 512 (773)
Q Consensus 433 k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g~~d~~g 512 (773)
.
T Consensus 54 -------------------------~------------------------------------------------------ 54 (299)
T cd02510 54 -------------------------K------------------------------------------------------ 54 (299)
T ss_pred -------------------------h------------------------------------------------------
Confidence 0
Q ss_pred CCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcC
Q 004118 513 NELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (773)
Q Consensus 513 ~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflD 578 (773)
...|.+.++..++. ...+.|.|.+++. +.|+||+.||+|.+ +.+++|.+.+-.+..
T Consensus 55 ~~~~~v~vi~~~~n-----~G~~~a~N~g~~~----A~gd~i~fLD~D~~-~~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 KYLPKVKVLRLKKR-----EGLIRARIAGARA----ATGDVLVFLDSHCE-VNVGWLEPLLARIAE 110 (299)
T ss_pred hcCCcEEEEEcCCC-----CCHHHHHHHHHHH----ccCCEEEEEeCCcc-cCccHHHHHHHHHHh
Confidence 00123556655532 3588999999996 68999999999998 589999999998753
No 53
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.52 E-value=1.1e-06 Score=85.00 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=42.2
Q ss_pred cchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccc
Q 004118 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRF 594 (773)
Q Consensus 533 ~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF 594 (773)
..+.++|.++...- ...++||+++|+|.+ ..+++|++++-.+.++ +++.|. |.++
T Consensus 63 g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~~-~~~~ 117 (202)
T cd04185 63 GGAGGFYEGVRRAY-ELGYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFLA-PLVL 117 (202)
T ss_pred chhhHHHHHHHHHh-ccCCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEec-ceeE
Confidence 46788888887532 457899999999997 6799999999988766 566653 4444
No 54
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.48 E-value=2.1e-06 Score=84.23 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=41.9
Q ss_pred cchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccc
Q 004118 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRF 594 (773)
Q Consensus 533 ~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF 594 (773)
.|++|+|.+++. +.++||+.+|+|-. ..+++|.+.+-.+.+. ...+|.....+
T Consensus 69 G~~~a~~~g~~~----a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r~~ 121 (211)
T cd04188 69 GKGGAVRAGMLA----ARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSRAH 121 (211)
T ss_pred CcHHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeec
Confidence 489999999996 57899999999997 7899999999987654 23455555433
No 55
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.46 E-value=2.9e-06 Score=83.73 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=36.2
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHH
Q 004118 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFE 400 (773)
Q Consensus 353 VfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~ 400 (773)
|+|||+| +. ..+..|+-|+++..|| +.+.++|.|||..+-|.+
T Consensus 1 ViIp~yn---~~-~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t~~ 43 (219)
T cd06913 1 IILPVHN---GE-QWLDECLESVLQQDFE-GTLELSVFNDASTDKSAE 43 (219)
T ss_pred CEEeecC---cH-HHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccHHH
Confidence 6899998 53 6889999999999998 469999999999875443
No 56
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.45 E-value=9.6e-06 Score=87.70 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=35.4
Q ss_pred cchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcC
Q 004118 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (773)
Q Consensus 533 ~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflD 578 (773)
.|++|+|++++. +.|+||+++|+|.. .+++.+.+.+-.+.+
T Consensus 149 G~~~A~~~Gi~~----a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 149 GKGGAVRIGMLA----SRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred ChHHHHHHHHHH----ccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 599999999995 57999999999996 688898888887754
No 57
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.37 E-value=1.7e-06 Score=85.32 Aligned_cols=115 Identities=15% Similarity=0.210 Sum_probs=64.7
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHH---Hhh-cCCCCCcceEEEccCcc
Q 004118 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM---CFM-MDPNLGKHVCYVQFPQR 593 (773)
Q Consensus 518 lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~am---cff-lDp~~g~~vafVQtPQr 593 (773)
+.++..++.. .+|+|+|.+++.+.- .+++||+.+|+|.+ ..|++|.+++ -.+ .++ .++.+ .|+.
T Consensus 49 i~~i~~~~n~-----G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~~~----~~~~~-~~~~ 116 (237)
T cd02526 49 IELIHLGENL-----GIAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLLAYKILSDKNS----NIGAV-GPRI 116 (237)
T ss_pred EEEEECCCce-----ehHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHHHHHHhhccCC----CeEEE-eeeE
Confidence 5566665432 399999999996421 15699999999998 5799999995 322 243 55554 4544
Q ss_pred ccCCCCcccchhhHHH-HHHHHhhhccC-CCccccccchhhhhHhhh---cCCCCC
Q 004118 594 FDGIDRNDRYANRNTV-FFDINLRGLDG-IQGPVYVGTGCVFNRTAL---YGYEPP 644 (773)
Q Consensus 594 F~N~d~~Dry~n~~~v-Ffdvi~~GlDG-~qgp~y~GTgcv~RR~AL---yG~~Pp 644 (773)
.........+..+... ++......... .......|+|+++||+++ -|+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~ 172 (237)
T cd02526 117 IDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFDED 172 (237)
T ss_pred EcCCCCeeccceeccCccceecccccCCceEeeeeeccceEEcHHHHHHhCCCCHH
Confidence 4322211111111100 00001111112 223456789999999988 455543
No 58
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.36 E-value=6.4e-06 Score=88.28 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=42.1
Q ss_pred cchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCcceEEEcc
Q 004118 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQF 590 (773)
Q Consensus 533 ~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcffl-Dp~~g~~vafVQt 590 (773)
.|++|+|.++.. +.|++|+.+|+|....+|++|.+.+-.|. +| ++++|..
T Consensus 102 Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 102 GKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 599999999985 68999999999995468999999998775 77 5677765
No 59
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.34 E-value=6.1e-06 Score=88.87 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=40.4
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 004118 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (773)
Q Consensus 347 ~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~ 399 (773)
..|.|.|+||+|| ++ ..+..|+-|+++..|+ .+.|+|.|||.++-|.
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~ 50 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSV 50 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHH
Confidence 3588999999998 54 6889999999999997 5899999999987443
No 60
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.32 E-value=7e-06 Score=87.00 Aligned_cols=110 Identities=17% Similarity=0.337 Sum_probs=81.7
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCc
Q 004118 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (773)
Q Consensus 347 ~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaP 426 (773)
..|.|.|+||||| ++.. +..||.|+++..|| .+.++|.|||.+. .+.+.+ +++ ++
T Consensus 3 ~~p~VSVIip~yN---~~~~-l~~~l~Svl~Qt~~--~~EiIVVDDgS~~--~~~~~~---~~~-------~~------- 57 (279)
T PRK10018 3 DNPLISIYMPTWN---RQQL-AIRAIKSVLRQDYS--NWEMIIVDDCSTS--WEQLQQ---YVT-------AL------- 57 (279)
T ss_pred CCCEEEEEEEeCC---CHHH-HHHHHHHHHhCCCC--CeEEEEEECCCCC--HHHHHH---HHH-------Hc-------
Confidence 4688999999998 7654 46999999999998 4899999999873 221111 110 00
Q ss_pred hhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCC
Q 004118 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (773)
Q Consensus 427 e~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g 506 (773)
T Consensus 58 -------------------------------------------------------------------------------- 57 (279)
T PRK10018 58 -------------------------------------------------------------------------------- 57 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcC
Q 004118 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (773)
Q Consensus 507 ~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflD 578 (773)
.-|++.|+..++. ...+.|+|.++.. ++|+||+.+|+|-+ ..|+.|.+.+-++..
T Consensus 58 -------~~~ri~~i~~~~n-----~G~~~a~N~gi~~----a~g~~I~~lDaDD~-~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 58 -------NDPRITYIHNDIN-----SGACAVRNQAIML----AQGEYITGIDDDDE-WTPNRLSVFLAHKQQ 112 (279)
T ss_pred -------CCCCEEEEECCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCC-CCccHHHHHHHHHHh
Confidence 0134777766543 3488999999985 78999999999997 468999998887643
No 61
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.07 E-value=5.3e-05 Score=66.71 Aligned_cols=52 Identities=27% Similarity=0.339 Sum_probs=41.3
Q ss_pred cccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHH-hhcCCCCCcceEEEccC
Q 004118 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC-FMMDPNLGKHVCYVQFP 591 (773)
Q Consensus 531 hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amc-fflDp~~g~~vafVQtP 591 (773)
+..+++++|.++.. .++++++++|+|.+ ..++++...+- +..++ +..+|+++
T Consensus 62 ~~g~~~~~~~~~~~----~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 62 NQGLAAARNAGLKA----ARGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CCChHHHHHHHHHH----hcCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 44799999999996 47999999999997 57888888744 44555 67778876
No 62
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.83 E-value=0.0012 Score=75.80 Aligned_cols=113 Identities=24% Similarity=0.338 Sum_probs=82.9
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcceEEEccCccccC
Q 004118 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQRFDG 596 (773)
Q Consensus 518 lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcff-lDp~~g~~vafVQtPQrF~N 596 (773)
+.|-.|. .+-..||||+-...|-=| +.-.++++||||-+ -..+.|-+.+-.| .+| +.|++||--.--|
T Consensus 214 ifYRrRr----~n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSv-Mtgd~lvrLv~~ME~~P----~aGlIQt~P~~~g 282 (736)
T COG2943 214 IFYRRRR----RNVKRKAGNIADFCRRWG--SAYSYMLVLDADSV-MTGDCLVRLVRLMEANP----DAGLIQTSPKASG 282 (736)
T ss_pred eeeehHh----hhhcccccCHHHHHHHhC--cccceEEEeecccc-cCchHHHHHHHHHhhCC----CCceeecchhhcC
Confidence 5554444 366789999999998644 55699999999997 5789999999988 578 8999999765555
Q ss_pred CCCcccchhhH----HHHHHHHhhhccCCCcc--ccccchhhhhHhhh---cCCCC
Q 004118 597 IDRNDRYANRN----TVFFDINLRGLDGIQGP--VYVGTGCVFNRTAL---YGYEP 643 (773)
Q Consensus 597 ~d~~Dry~n~~----~vFfdvi~~GlDG~qgp--~y~GTgcv~RR~AL---yG~~P 643 (773)
.+. .|+--+ +++=-+...|+.-||+. -|=|-|+++|-+|. .|+.|
T Consensus 283 g~T--L~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF~~hcgLp~ 336 (736)
T COG2943 283 GDT--LYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAFIEHCGLPP 336 (736)
T ss_pred cch--HHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhhHHhcCCCC
Confidence 442 333322 23333556788888774 58999999999998 56655
No 63
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=97.77 E-value=7e-05 Score=74.25 Aligned_cols=100 Identities=21% Similarity=0.081 Sum_probs=72.1
Q ss_pred CcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCCCCcc-cchhhHH
Q 004118 530 QHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRND-RYANRNT 608 (773)
Q Consensus 530 ~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~d~~D-ry~n~~~ 608 (773)
.-+.|..||-.+++. ....++|+++|+|+. .+|++|++++..|.|| ++++|.++.++.+.+..- ++.....
T Consensus 14 g~N~Kv~nL~~~~~~---~a~~d~~~~~DsDi~-v~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~~~~~~l~~~~~ 85 (175)
T PF13506_consen 14 GCNPKVNNLAQGLEA---GAKYDYLVISDSDIR-VPPDYLRELVAPLADP----GVGLVTGLPRGVPARGFWSRLEAAFF 85 (175)
T ss_pred CCChHHHHHHHHHHh---hCCCCEEEEECCCee-ECHHHHHHHHHHHhCC----CCcEEEecccccCCcCHHHHHHHHHH
Confidence 457999999999985 268999999999998 5799999999999998 799998876655544211 1111111
Q ss_pred HHHHHHhhhccCCCccccccchhhhhHhhhc
Q 004118 609 VFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (773)
Q Consensus 609 vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALy 639 (773)
.|+-..+.. .-+..+..|...++||++|.
T Consensus 86 ~~~~~~~~a--~~~~~~~~G~~m~~rr~~L~ 114 (175)
T PF13506_consen 86 NFLPGVLQA--LGGAPFAWGGSMAFRREALE 114 (175)
T ss_pred hHHHHHHHH--hcCCCceecceeeeEHHHHH
Confidence 222222222 22457889999999999995
No 64
>PRK10063 putative glycosyl transferase; Provisional
Probab=97.74 E-value=0.00027 Score=73.34 Aligned_cols=48 Identities=17% Similarity=0.052 Sum_probs=36.9
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEecCCCchhhHH
Q 004118 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAV-DYPVDKVSCYVSDDGAAMLTFE 400 (773)
Q Consensus 349 P~VDVfV~T~dP~kEPp~vt~nTVlSilal-DYP~~Kl~~YVsDDG~s~lt~~ 400 (773)
|.|.|+||||| +. ..+..|+.|++++ ..+...+.++|.|||.++-|.+
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~ 49 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTRE 49 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHH
Confidence 57899999998 64 5678899998864 3333478999999999985444
No 65
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=97.72 E-value=3.7e-05 Score=74.45 Aligned_cols=83 Identities=25% Similarity=0.349 Sum_probs=62.5
Q ss_pred EEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCCCCcccchhhHHHHHHHH----hhhccCCCc-cccc
Q 004118 553 FLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDIN----LRGLDGIQG-PVYV 627 (773)
Q Consensus 553 fIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~d~~Dry~n~~~vFfdvi----~~GlDG~qg-p~y~ 627 (773)
+|+++|+|.. +.+++|++++.+|.+| ++++||+|+.+++ ....+.+.+.++|... ....+..+. .++.
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~~~----~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALEDP----KVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHhCC----CceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 5899999997 6799999999999888 8999999999973 3445666666666422 222233434 4578
Q ss_pred cchhhhhHhhh---cCCC
Q 004118 628 GTGCVFNRTAL---YGYE 642 (773)
Q Consensus 628 GTgcv~RR~AL---yG~~ 642 (773)
|+|.++||++| .|++
T Consensus 74 G~~~~~r~~~l~~vg~~~ 91 (193)
T PF13632_consen 74 GSGMLFRREALREVGGFD 91 (193)
T ss_pred CcceeeeHHHHHHhCccc
Confidence 99999999999 3555
No 66
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=97.69 E-value=0.00031 Score=72.62 Aligned_cols=111 Identities=19% Similarity=0.267 Sum_probs=65.4
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCC
Q 004118 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (773)
Q Consensus 518 lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~ 597 (773)
+.|+.-++.- ..|||+|.+++.. .-.+++||+.+|.|-+ +.+++|.+.+.++... +.+++.|. |..++.
T Consensus 47 i~~i~~~~N~-----G~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~~~- 115 (281)
T TIGR01556 47 IALIHLGDNQ-----GIAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFFDR- 115 (281)
T ss_pred eEEEECCCCc-----chHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEEcC-
Confidence 6666654332 5899999999863 1237899999999997 5689999999988542 22677776 433332
Q ss_pred CCcccchh--hHHHHHHHH-hhhccC-CCccccccchhhhhHhhhc
Q 004118 598 DRNDRYAN--RNTVFFDIN-LRGLDG-IQGPVYVGTGCVFNRTALY 639 (773)
Q Consensus 598 d~~Dry~n--~~~vFfdvi-~~GlDG-~qgp~y~GTgcv~RR~ALy 639 (773)
+....++. ....++... ...... ....+..++|+++||+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~li~~~~~~ 161 (281)
T TIGR01556 116 GTSRRLPAIHLDGLLLRQISLDGLTTPQKTSFLISSGCLITREVYQ 161 (281)
T ss_pred CCcccCCceeecccceeeecccccCCceeccEEEcCcceeeHHHHH
Confidence 22111111 001110000 001111 1223557889999999994
No 67
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.63 E-value=0.00068 Score=73.23 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=35.3
Q ss_pred cchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhc
Q 004118 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM 577 (773)
Q Consensus 533 ~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcffl 577 (773)
.|++|+|++++. +.|++|+.+|||.. .+|+.+.+.+-.+.
T Consensus 77 G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 77 GQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 588999999986 68999999999997 78899999988774
No 68
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=97.62 E-value=0.00083 Score=70.64 Aligned_cols=108 Identities=11% Similarity=0.191 Sum_probs=69.7
Q ss_pred ccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCCCCcccchhhH----
Q 004118 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRN---- 607 (773)
Q Consensus 532 h~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~d~~Dry~n~~---- 607 (773)
-.+|.|.|.++.. +++++|+++|+|++ +.|++|.+++-++..=. ....+++-.|-.|.+.+....+-...
T Consensus 74 f~~a~arN~g~~~----A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~-~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~ 147 (281)
T PF10111_consen 74 FSRAKARNIGAKY----ARGDYLIFLDADCI-PSPDFIEKLLNHVKKLD-KNPNAFLVYPCLYLSEEGSEKFYSQFKNLW 147 (281)
T ss_pred cCHHHHHHHHHHH----cCCCEEEEEcCCee-eCHHHHHHHHHHHHHHh-cCCCceEEEeeeeccchhhHHHhhcchhcc
Confidence 3789999999996 69999999999997 68999999999422100 11346777777777655443332221
Q ss_pred --HHHHHHHhhhccCCCccccccchhhhhHhhh---cCCCCCC
Q 004118 608 --TVFFDINLRGLDGIQGPVYVGTGCVFNRTAL---YGYEPPL 645 (773)
Q Consensus 608 --~vFfdvi~~GlDG~qgp~y~GTgcv~RR~AL---yG~~Pp~ 645 (773)
.++-........-+.....+|+..++||+.. .|+|...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f 190 (281)
T PF10111_consen 148 DHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGFDERF 190 (281)
T ss_pred hHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCCCccc
Confidence 1111222212233444456778888999866 7888753
No 69
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.44 E-value=0.0013 Score=57.97 Aligned_cols=47 Identities=26% Similarity=0.301 Sum_probs=40.7
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHH
Q 004118 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFE 400 (773)
Q Consensus 348 lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~ 400 (773)
.|.|.|+|||+| ++ .....+|.|++...|+. ..+.|.|||.++-|.+
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~ 48 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTE 48 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHH
Confidence 578999999998 65 89999999999999996 6699999999984443
No 70
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=97.18 E-value=0.0034 Score=63.39 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=35.8
Q ss_pred cchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 004118 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (773)
Q Consensus 533 ~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp 579 (773)
..+.+.|.++.. ..+++|+++|+|-+ ..++.+.+.+-++.+.
T Consensus 58 g~~~~~n~~~~~----a~~d~vl~lDaD~~-~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 58 GFGAQRNFALEL----ATNDWVLSLDADER-LTPELADEILALLATD 99 (229)
T ss_pred ChHHHHHHHHHh----CCCCEEEEEeCCcC-cCHHHHHHHHHHHhCC
Confidence 478899999985 67899999999997 6789999999888654
No 71
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.60 E-value=0.00096 Score=72.80 Aligned_cols=48 Identities=31% Similarity=0.946 Sum_probs=43.9
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccc
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Y 69 (773)
.|..|=+.+-++ ..-|.+| -|||.|||.||..-|.+=|+.||-|...|
T Consensus 16 ~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 599999998776 3459999 99999999999999999999999999999
No 72
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=96.56 E-value=0.03 Score=61.76 Aligned_cols=90 Identities=14% Similarity=0.260 Sum_probs=59.0
Q ss_pred CcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHH---HHHHHHhh-cCCCCCcceEEEccCccccCCCCcccchh
Q 004118 530 QHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKA---LREAMCFM-MDPNLGKHVCYVQFPQRFDGIDRNDRYAN 605 (773)
Q Consensus 530 ~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~---Lr~amcff-lDp~~g~~vafVQtPQrF~N~d~~Dry~n 605 (773)
..|+|+ |+|.++.. .+++++++||-|.+ +.|+| +.++++++ .|+ +|..|-.= |-.-.....+
T Consensus 82 a~hyk~-aln~vF~~----~~~~~vIILEDDl~-~sPdFf~yf~~~l~~y~~D~----~v~~ISa~----NdnG~~~~~~ 147 (334)
T cd02514 82 ARHYKW-ALTQTFNL----FGYSFVIILEDDLD-IAPDFFSYFQATLPLLEEDP----SLWCISAW----NDNGKEHFVD 147 (334)
T ss_pred HHHHHH-HHHHHHHh----cCCCEEEEECCCCc-cCHhHHHHHHHHHHHHhcCC----CEEEEEee----ccCCcccccC
Confidence 345665 78888764 47999999999996 79995 58999877 466 78777762 2100000000
Q ss_pred h-HHHHHHHHhhhccCCCccccccchhhhhHhhhcCCCC
Q 004118 606 R-NTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEP 643 (773)
Q Consensus 606 ~-~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALyG~~P 643 (773)
. ...+ ...-++.|.|-+++|++...++|
T Consensus 148 ~~~~~l----------yrs~ff~glGWml~r~~W~e~~~ 176 (334)
T cd02514 148 DTPSLL----------YRTDFFPGLGWMLTRKLWKELEP 176 (334)
T ss_pred CCcceE----------EEecCCCchHHHHHHHHHHHhCC
Confidence 0 1111 12357899999999999977766
No 73
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=96.47 E-value=0.033 Score=59.18 Aligned_cols=123 Identities=24% Similarity=0.301 Sum_probs=86.9
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCch
Q 004118 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPE 427 (773)
Q Consensus 348 lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe 427 (773)
-|.|-+.|.||+ +...+.+++-++.+..||.+ .+++.|+|.++.|.+.+.+..
T Consensus 2 ~~~i~~iiv~yn----~~~~l~~~l~~l~~~~~~~~--~iv~vDn~s~d~~~~~~~~~~--------------------- 54 (305)
T COG1216 2 MPKISIIIVTYN----RGEDLVECLASLAAQTYPDD--VIVVVDNGSTDGSLEALKARF--------------------- 54 (305)
T ss_pred CcceEEEEEecC----CHHHHHHHHHHHhcCCCCCc--EEEEccCCCCCCCHHHHHhhc---------------------
Confidence 367889999997 67889999999999999975 344788888875544332200
Q ss_pred hhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCC
Q 004118 428 WYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGG 507 (773)
Q Consensus 428 ~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g~ 507 (773)
T Consensus 55 -------------------------------------------------------------------------------- 54 (305)
T COG1216 55 -------------------------------------------------------------------------------- 54 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCC-EEEEecCCCCCCcHHHHHHHHHhhc-CCCCCcce
Q 004118 508 LDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGP-FLLNLDCDHYINNSKALREAMCFMM-DPNLGKHV 585 (773)
Q Consensus 508 ~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngp-fIlnlDcDh~~nnp~~Lr~amcffl-Dp~~g~~v 585 (773)
.|.+.|+.-.+.-| =||+.|.+++.. +.++. |++.|+-|. +..+++|.+.+-.+. ++ .+
T Consensus 55 -------~~~v~~i~~~~NlG-----~agg~n~g~~~a--~~~~~~~~l~LN~D~-~~~~~~l~~ll~~~~~~~----~~ 115 (305)
T COG1216 55 -------FPNVRLIENGENLG-----FAGGFNRGIKYA--LAKGDDYVLLLNPDT-VVEPDLLEELLKAAEEDP----AA 115 (305)
T ss_pred -------CCcEEEEEcCCCcc-----chhhhhHHHHHH--hcCCCcEEEEEcCCe-eeChhHHHHHHHHHHhCC----CC
Confidence 12244444443333 378888888753 34544 999999996 478999999998774 44 67
Q ss_pred EEEccCccccC
Q 004118 586 CYVQFPQRFDG 596 (773)
Q Consensus 586 afVQtPQrF~N 596 (773)
++|+.-.+.++
T Consensus 116 ~~~~~~i~~~~ 126 (305)
T COG1216 116 GVVGPLIRNYD 126 (305)
T ss_pred eEeeeeEecCC
Confidence 78877766544
No 74
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.72 E-value=0.011 Score=64.44 Aligned_cols=59 Identities=25% Similarity=0.525 Sum_probs=51.4
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccccCCCC
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSP 76 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~kGs~ 76 (773)
..+.|.+|-.+..++.+=.++|. +||-.+|+.|.+--...|...||+|++..++.+=.+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 45799999999999988888888 999999999998877889999999999998764333
No 75
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.33 E-value=0.032 Score=46.83 Aligned_cols=46 Identities=35% Similarity=0.889 Sum_probs=36.5
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCC--ccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQ--CKTRY 69 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPq--Ckt~Y 69 (773)
.+..|.+||+.|- +|++.|.|.+|+=|.=|+||+++ +.|-- |++.+
T Consensus 4 ~~~~C~~Cg~~~~---~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKFK---DGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCccc---CCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 3568999999874 47889999999999999999765 34544 66655
No 76
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=89.61 E-value=2 Score=44.87 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=37.1
Q ss_pred CcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 004118 516 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (773)
Q Consensus 516 P~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp 579 (773)
+++.-..|.+.-|- .-|.-++|.+ ..|+||++.|||.- .+|+++-+.+-..-+-
T Consensus 63 d~i~l~pR~~klGL-----gtAy~hgl~~----a~g~fiviMDaDls-HhPk~ipe~i~lq~~~ 116 (238)
T KOG2978|consen 63 DNILLKPRTKKLGL-----GTAYIHGLKH----ATGDFIVIMDADLS-HHPKFIPEFIRLQKEG 116 (238)
T ss_pred CcEEEEeccCcccc-----hHHHHhhhhh----ccCCeEEEEeCccC-CCchhHHHHHHHhhcc
Confidence 34667778765442 1244445554 68999999999995 8899988877665543
No 77
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=89.47 E-value=0.39 Score=35.59 Aligned_cols=44 Identities=34% Similarity=0.804 Sum_probs=33.0
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccc
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~ 68 (773)
.|.||.+.+ .+.++ ...|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~~-~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPVV-LLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCceE-ecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998886 22322 235899999999976666678899999875
No 78
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=88.45 E-value=13 Score=44.09 Aligned_cols=44 Identities=23% Similarity=0.141 Sum_probs=35.8
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCC
Q 004118 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDG 393 (773)
Q Consensus 347 ~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG 393 (773)
.++.+=.+||+|+ |...-...|+=|+...+||..+--+.|.=||
T Consensus 23 ~~~~~i~~v~cy~---E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG 66 (527)
T PF03142_consen 23 PDKFVICLVPCYS---EGEEELRTTLDSLATTDYDDSRKLIFVICDG 66 (527)
T ss_pred CCceEEEEEcccc---CChHHHHHHHHHHHhcCCCCcccEEEEEcCc
Confidence 4567778999998 9999999999999999999864445555554
No 79
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.69 E-value=0.43 Score=46.83 Aligned_cols=52 Identities=29% Similarity=0.751 Sum_probs=38.6
Q ss_pred ccccccCCCcccCCCCCceeecCC-CCCCcchhhhHhHHh--hCCCCCCCccccccccC
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDV-CAFPVCRPCYEYERK--DGNQSCPQCKTRYKKHK 73 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~E-C~FPVCRpCYeyErk--eG~q~CPqCkt~Ykr~k 73 (773)
--|.||.|. ..-+-|.-=|| |||.||-.||--=.| .-.-+||-|||-||..+
T Consensus 81 YeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 369999874 22344665555 599999999976666 45689999999998653
No 80
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=86.36 E-value=24 Score=39.11 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=38.2
Q ss_pred ceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCC---CCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhC
Q 004118 350 AVDIFVSTVDPLKEPPLVTANTVLSILAVDYPV---DKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYN 420 (773)
Q Consensus 350 ~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~---~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~ 420 (773)
...|+||.||=.+-=+.+.-.|| +-|.-.|-. =...+.|+|||..+-|.+... -||+|++
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav-~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~----------k~s~K~~ 130 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAV-DYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVAL----------KFSRKLG 130 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHH-HHHHHHhccCCCCceeEEEeCCCCchhHHHHHH----------HHHHHcC
Confidence 78899999992222233444444 334444544 267899999999996555333 3777775
No 81
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=79.41 E-value=2.3 Score=34.87 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=33.6
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccc
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Y 69 (773)
+|.||++-+ .+ +.+ -.||+-.||.|.+--.++ ++.||.|+.++
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~ 45 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPL 45 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCC
Confidence 699999863 22 333 378999999999877766 67899999877
No 82
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=78.52 E-value=1.1 Score=53.86 Aligned_cols=32 Identities=25% Similarity=0.647 Sum_probs=21.4
Q ss_pred cCCCCCC----cchhhhHhHHhhCCCCCCCccccccc
Q 004118 39 CDVCAFP----VCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 39 C~EC~FP----VCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
|.+||-+ .|.-|- .+...|..-||+|+++-..
T Consensus 18 C~~CG~~l~~~~Cp~CG-~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 18 CQKCGTSLTHKPCPQCG-TEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred ccccCCCCCCCcCCCCC-CCCCcccccccccCCcccc
Confidence 5555443 355554 4567888999999998653
No 83
>PHA02929 N1R/p28-like protein; Provisional
Probab=75.09 E-value=3.7 Score=43.86 Aligned_cols=55 Identities=24% Similarity=0.530 Sum_probs=39.8
Q ss_pred cCCccccccCCCcccCC-CCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 15 VGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~-~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
.....|.||.+.+.-++ ....|..=..|+=.-|+.|.. +..+.++.||-|++++-
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 45679999999876443 112234444789999999995 44567889999999875
No 84
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=73.73 E-value=2.6 Score=46.07 Aligned_cols=53 Identities=23% Similarity=0.520 Sum_probs=44.6
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccccc
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~ 72 (773)
+-|.+|--++-++.+ +|.--|+|+.+.|-.|..-=-.-|...||.|.+.-+..
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 358889888888765 77777799999999999777778999999999998654
No 85
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=72.86 E-value=2.7 Score=32.66 Aligned_cols=43 Identities=33% Similarity=0.697 Sum_probs=33.3
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcc
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCK 66 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCk 66 (773)
.|.||-+++.. ++..+... |+=-.|+.|..-=.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999755 67777775 9999999998654444 57999995
No 86
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=71.84 E-value=5.5 Score=41.45 Aligned_cols=63 Identities=32% Similarity=0.656 Sum_probs=40.8
Q ss_pred CCCCCCCCCcc-ccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHH---------------hhCCCCCCC
Q 004118 1 MESEGETGVKS-IKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER---------------KDGNQSCPQ 64 (773)
Q Consensus 1 ~~~~~~~~~k~-~~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyEr---------------keG~q~CPq 64 (773)
|+-+-++..+. +...+.-.|.||-|.+- ++.+ -.|+--.|++|-+.-. +-+...||-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPv 73 (193)
T PLN03208 1 MEIEKDEDDTTLVDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73 (193)
T ss_pred CCcccccccceeccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCC
Confidence 45554444433 44445569999998752 3334 2689999999996321 113468999
Q ss_pred cccccc
Q 004118 65 CKTRYK 70 (773)
Q Consensus 65 Ckt~Yk 70 (773)
|++...
T Consensus 74 CR~~Is 79 (193)
T PLN03208 74 CKSDVS 79 (193)
T ss_pred CCCcCC
Confidence 999884
No 87
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=71.81 E-value=2.6 Score=34.03 Aligned_cols=27 Identities=22% Similarity=0.657 Sum_probs=21.5
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCc
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPV 46 (773)
-+|.-||.++.+... .-+-|.+|++.|
T Consensus 3 Y~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCC--CceECCCCCceE
Confidence 379999999888743 348899999876
No 88
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=71.18 E-value=0.95 Score=38.87 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=21.6
Q ss_pred hhhhHhHHhhCCCCCCCcccccccc
Q 004118 48 RPCYEYERKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 48 RpCYeyErkeG~q~CPqCkt~Ykr~ 72 (773)
+-|+|++..||.=.||+|+..|--.
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~ 66 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIR 66 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEE
T ss_pred hhhhcccccCCEEEcCCCCCEEeCC
Confidence 5688889999999999999999644
No 89
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=70.82 E-value=1.4e+02 Score=34.51 Aligned_cols=99 Identities=17% Similarity=0.152 Sum_probs=63.9
Q ss_pred CcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEE-ccCccccCCCCcccchhhHH
Q 004118 530 QHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV-QFPQRFDGIDRNDRYANRNT 608 (773)
Q Consensus 530 ~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafV-QtPQrF~N~d~~Dry~n~~~ 608 (773)
.-+.|-.||=-+.|. ..-|+|++.|.|-. -.|+.+....-=|+.++ +.|+| |+|-.++- +-.|. +-++
T Consensus 154 g~npKInN~mpgy~~----a~ydlvlisDsgI~-m~pdtildm~t~M~she---kmalvtq~py~~dr-~Gf~a-tle~- 222 (431)
T KOG2547|consen 154 GLNPKINNMMPGYRA----AKYDLVLISDSGIF-MKPDTILDMATTMMSHE---KMALVTQTPYCKDR-QGFDA-TLEQ- 222 (431)
T ss_pred ccChhhhccCHHHHH----hcCCEEEEecCCee-ecCchHHHHHHhhhccc---ceeeecCCceeecc-ccchh-hhhh-
Confidence 445677777667775 56789999999987 58899999888888764 78888 77755432 22221 1111
Q ss_pred HHHHHHhhh----ccCCCccccccchhhhhHhhhc
Q 004118 609 VFFDINLRG----LDGIQGPVYVGTGCVFNRTALY 639 (773)
Q Consensus 609 vFfdvi~~G----lDG~qgp~y~GTgcv~RR~ALy 639 (773)
+||....+- -+-.+--.+.|-.|++|++||.
T Consensus 223 ~~fgTsh~r~yl~~n~~~~~c~tgms~~mrK~~ld 257 (431)
T KOG2547|consen 223 VYFGTSHPRIYLSGNVLGFNCSTGMSSMMRKEALD 257 (431)
T ss_pred eeeccCCceEEEccccccccccccHHHHHHHHHHH
Confidence 444433221 1222223457888999999995
No 90
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=70.81 E-value=2 Score=36.51 Aligned_cols=47 Identities=32% Similarity=0.740 Sum_probs=33.9
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~ 72 (773)
.-|.|-.|+..-.. ..+.+ |+--||+-|+.-||-.| ||=|.||+...
T Consensus 6 ~~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 34566667665221 13344 59999999999999887 99999999653
No 91
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=70.01 E-value=3.4 Score=31.42 Aligned_cols=26 Identities=23% Similarity=0.672 Sum_probs=19.1
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCc
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAFPV 46 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~FPV 46 (773)
+|.-||.+|.+... + -|-|.+|++.|
T Consensus 2 ~C~~Cg~~~~~~~~-~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKPG-D-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BSTS-S-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCCC-C-cEECCcCCCeE
Confidence 68999999997653 3 37999999875
No 92
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.52 E-value=3.6 Score=43.73 Aligned_cols=46 Identities=33% Similarity=0.804 Sum_probs=37.0
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH---HhhCCCCCCCcccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE---RKDGNQSCPQCKTRYK 70 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyE---rkeG~q~CPqCkt~Yk 70 (773)
---|.||=|.+ =|+.|-| ||---|.||. |- ....++.||=||..-.
T Consensus 47 ~FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 47 FFDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred ceeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCccccccc
Confidence 34799996653 4578888 9999999998 65 5688899999998753
No 93
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=67.04 E-value=1.2 Score=42.08 Aligned_cols=48 Identities=31% Similarity=0.723 Sum_probs=35.4
Q ss_pred cCCccccccCCCcccCC-CCCceeecCCCCCCcchhhhHhHHhhCCCCCCCc
Q 004118 15 VGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~-~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqC 65 (773)
.+...|.+|+...|+-. .| ..|..|...||+.|-.|-.+++-=.|-=|
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred cCCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 36679999999988763 35 89999999999999988545555556555
No 94
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=66.57 E-value=20 Score=37.14 Aligned_cols=44 Identities=25% Similarity=0.362 Sum_probs=36.0
Q ss_pred ccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCC
Q 004118 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDP 579 (773)
Q Consensus 532 h~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcff-lDp 579 (773)
..-|-++|.+++. +.++|++.+.=|-.+.+.++|.+++-.| .||
T Consensus 40 ~s~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~ 84 (217)
T PF13712_consen 40 KSMAAAYNEAMEK----AKAKYLVFLHQDVFIINENWLEDILEIFEEDP 84 (217)
T ss_dssp S-TTTHHHHHGGG------SSEEEEEETTEE-SSHHHHHHHHHHHHH-T
T ss_pred cCHHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCC
Confidence 4567899999995 7999999999999999999999999999 888
No 95
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=65.86 E-value=6.1 Score=27.96 Aligned_cols=39 Identities=38% Similarity=0.894 Sum_probs=27.3
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCc
Q 004118 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (773)
Q Consensus 20 C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqC 65 (773)
|.||.+. ...+.+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~-----~~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE-----LKDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC-----CCCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 6788777 112222 25888899999976666677889987
No 96
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=65.30 E-value=22 Score=41.02 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=35.6
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecC
Q 004118 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDD 392 (773)
Q Consensus 345 ~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDD 392 (773)
+.+||++.|+|--.| |--..++.||-|++.--=|.=--.|.+.||
T Consensus 151 pe~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDD 195 (603)
T KOG3737|consen 151 PENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDD 195 (603)
T ss_pred cccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEecc
Confidence 578999999999998 999999999999886543322335677777
No 97
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=65.17 E-value=5.1 Score=44.59 Aligned_cols=52 Identities=29% Similarity=0.860 Sum_probs=43.3
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~ 72 (773)
...|.||++.. +.+--.|++| -|+|-+|-+|- --.-+++..||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~-~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCH-KTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhh-hcccccCCCCCccCCccccC
Confidence 46899999985 4455679999 99999999998 34568999999999999764
No 98
>PHA02862 5L protein; Provisional
Probab=64.31 E-value=4.1 Score=40.80 Aligned_cols=49 Identities=27% Similarity=0.522 Sum_probs=31.8
Q ss_pred CccccccCCCcccCCCCCceeecCCC---CCCcchhhhHhH-HhhCCCCCCCccccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVC---AFPVCRPCYEYE-RKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC---~FPVCRpCYeyE-rkeG~q~CPqCkt~Ykr 71 (773)
+.+|.||-++ +++..-+| .| .==|=+.|..-= ...++..|++||++|.-
T Consensus 2 ~diCWIC~~~-----~~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDV-----CDERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCc-----CCCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4689999876 23445777 44 112335565322 44788999999999963
No 99
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=62.37 E-value=6.4 Score=43.78 Aligned_cols=64 Identities=31% Similarity=0.753 Sum_probs=47.1
Q ss_pred ccccCCccccc--cCCCcccCCCCCceeecCC-CCCCcchhhhH-----------------------hH-----------
Q 004118 12 IKNVGGQVCQI--CGDNVGKTVDGNPFVACDV-CAFPVCRPCYE-----------------------YE----------- 54 (773)
Q Consensus 12 ~~~~~~~~C~i--Cgd~Vg~~~~Ge~FVAC~E-C~FPVCRpCYe-----------------------yE----------- 54 (773)
+.+++|-.|.- ||..+-...| .--|.|.. |+|-.||.|.| +|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~a 388 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAA 388 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhh
Confidence 45677889986 8887655442 33588877 99999999998 23
Q ss_pred ----HhhCCCCCCCccccccccCCCC
Q 004118 55 ----RKDGNQSCPQCKTRYKKHKGSP 76 (773)
Q Consensus 55 ----rkeG~q~CPqCkt~Ykr~kGs~ 76 (773)
.|-.++-||.|.++-.|.-|+.
T Consensus 389 s~~TIk~tTkpCPkChvptErnGGCm 414 (446)
T KOG0006|consen 389 SKETIKKTTKPCPKCHVPTERNGGCM 414 (446)
T ss_pred hhhhhhhccCCCCCccCccccCCceE
Confidence 2345678999999988876663
No 100
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=62.03 E-value=6.5 Score=39.87 Aligned_cols=51 Identities=27% Similarity=0.498 Sum_probs=34.4
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCC---CcchhhhHhH-HhhCCCCCCCcccccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYE-RKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~F---PVCRpCYeyE-rkeG~q~CPqCkt~Ykr~ 72 (773)
.+..|.||-++- ++..-+| .|.= -|=+.|-+-= ..-++..|++|+++|.-.
T Consensus 7 ~~~~CRIC~~~~-----~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEY-----DVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCC-----CCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 456999997662 3344578 5532 2346777544 345789999999999754
No 101
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=60.46 E-value=5.8 Score=44.00 Aligned_cols=44 Identities=34% Similarity=0.844 Sum_probs=37.2
Q ss_pred CCCCCceeecCCCCCCc--------ch--hhhHhHHhhCCCCCCCccccccccC
Q 004118 30 TVDGNPFVACDVCAFPV--------CR--PCYEYERKDGNQSCPQCKTRYKKHK 73 (773)
Q Consensus 30 ~~~Ge~FVAC~EC~FPV--------CR--pCYeyErkeG~q~CPqCkt~Ykr~k 73 (773)
..+|...--|.-|+||| |+ .|||-+|.+-.+.||.|-.|-.|..
T Consensus 84 k~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIE 137 (389)
T ss_pred cccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHH
Confidence 45677677899999998 54 6999999999999999999998763
No 102
>PRK00420 hypothetical protein; Validated
Probab=59.87 E-value=3.9 Score=39.14 Aligned_cols=29 Identities=38% Similarity=0.757 Sum_probs=23.1
Q ss_pred eecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 37 VAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
-.|..|++|.= +.++|.-.||.|++.+.-
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeee
Confidence 46888888873 338999999999998854
No 103
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=57.83 E-value=5.8 Score=32.89 Aligned_cols=28 Identities=25% Similarity=0.758 Sum_probs=17.9
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhH
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE 52 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYe 52 (773)
.|.|||.+||+... .-+. =+| ||..|+.
T Consensus 1 ~C~iCg~kigl~~~--~k~~---DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKIK---DGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc--eecc---Ccc-chHHHHH
Confidence 59999999999642 1111 123 6777774
No 105
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=54.98 E-value=4.2 Score=45.14 Aligned_cols=36 Identities=28% Similarity=0.806 Sum_probs=27.5
Q ss_pred cccccCCCcccCCCCCceeecCCC-CCCcchhhhHhHHhhC
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERKDG 58 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC-~FPVCRpCYeyErkeG 58 (773)
.|.+|--++- .-.|+-|+|| +|-.|-||+---...|
T Consensus 7 hCdvC~~d~T----~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDMT----DLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhhh----cceeeeeecccccceehhhhhcccccc
Confidence 5888876543 4479999999 9999999995444444
No 106
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=54.81 E-value=9.9 Score=28.82 Aligned_cols=40 Identities=30% Similarity=0.728 Sum_probs=30.1
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh-hCCCCCCCc
Q 004118 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-DGNQSCPQC 65 (773)
Q Consensus 20 C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErk-eG~q~CPqC 65 (773)
|.||.+...... --..|+=..|+.|..--.+ .+...||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 778887644332 3347899999999987766 788899988
No 107
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=54.33 E-value=13 Score=29.77 Aligned_cols=46 Identities=26% Similarity=0.627 Sum_probs=32.3
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCC-cchhhhHhHHhhCCCCCCCccccccc
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~EC~FP-VCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
..|.||.+..-- -.|. .|+=- +|..|++--++ ....||-|+++.++
T Consensus 3 ~~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRD----VVLL---PCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSS----EEEE---TTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCCccCCccCCc----eEEe---CCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 369999987321 2344 46778 99999966666 77999999998753
No 108
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=54.16 E-value=12 Score=28.45 Aligned_cols=39 Identities=36% Similarity=0.907 Sum_probs=27.4
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCc
Q 004118 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (773)
Q Consensus 20 C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqC 65 (773)
|.||-+...- +++.- .||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~~-----~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 6788665322 44443 79999999999776666 7999987
No 109
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=52.62 E-value=14 Score=29.39 Aligned_cols=38 Identities=26% Similarity=0.836 Sum_probs=28.4
Q ss_pred CCccccccCCCcccCCCCCceeecCCC-CCCcchhhhHhHHhhC
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERKDG 58 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC-~FPVCRpCYeyErkeG 58 (773)
....|.+|+..| .|.-| -|.+| .|-+|..||..-+..+
T Consensus 3 ~~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 3 HSYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CCcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 345799999854 36666 79999 9999999997544433
No 110
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=51.59 E-value=11 Score=31.93 Aligned_cols=33 Identities=33% Similarity=0.702 Sum_probs=24.9
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchh
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRP 49 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRp 49 (773)
.+|+|..||..+..+..+..|+ |..|+|-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~-C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFT-CPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceEE-cCCCCCEECcH
Confidence 6889999999888755666554 87888876554
No 111
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=51.42 E-value=10 Score=30.24 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=18.3
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCc
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPV 46 (773)
-.|+-||..+.+++... -+-|..|+.++
T Consensus 4 y~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 4 YKCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred EECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 36778888777766554 35676666654
No 112
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=50.53 E-value=13 Score=42.75 Aligned_cols=30 Identities=20% Similarity=0.563 Sum_probs=22.4
Q ss_pred CceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccccc
Q 004118 34 NPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 34 e~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~ 72 (773)
+.-++|++|+.-+ ..+...||+|++.-.|+
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~ 248 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVR 248 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCC
Confidence 3467899999964 23445899999988655
No 113
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=49.38 E-value=14 Score=29.42 Aligned_cols=31 Identities=32% Similarity=0.806 Sum_probs=25.2
Q ss_pred cccccCCCcccCCCCCceeecCCCC-CCcchhhhHhH
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYE 54 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~-FPVCRpCYeyE 54 (773)
.|.+|+..| . | ....|.+|. |-+|..||...
T Consensus 2 ~C~~C~~~i--~--g-~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLKPI--V--G-VRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCcCCCCCC--c--C-CEEECCCCCCCcCHHHHHCcC
Confidence 589999853 2 5 789999997 99999999643
No 114
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=48.23 E-value=11 Score=42.94 Aligned_cols=30 Identities=20% Similarity=0.562 Sum_probs=21.7
Q ss_pred ceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccccc
Q 004118 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 35 ~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~ 72 (773)
--++|++|+..+ . ......||+|++.--|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999966 1 23346899999987544
No 115
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=47.84 E-value=16 Score=29.66 Aligned_cols=30 Identities=27% Similarity=0.938 Sum_probs=25.4
Q ss_pred cccccCCCcccCCCCCceeecCCC-CCCcchhhhH
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYE 52 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC-~FPVCRpCYe 52 (773)
.|..|+.++. +...+.|.+| .|-+|-.||.
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhh
Confidence 5889987653 4588999999 9999999996
No 116
>PRK04023 DNA polymerase II large subunit; Validated
Probab=47.49 E-value=13 Score=46.92 Aligned_cols=45 Identities=22% Similarity=0.692 Sum_probs=32.2
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCC-----cchhhhHhHHhhC-CCCCCCcccccc
Q 004118 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFP-----VCRPCYEYERKDG-NQSCPQCKTRYK 70 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FP-----VCRpCYeyErkeG-~q~CPqCkt~Yk 70 (773)
.....|.-||... ....|.+|+=. .|..| ++.+ .-.||.|++.-.
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4556899999883 55689999843 67777 3333 367999987654
No 117
>PRK07220 DNA topoisomerase I; Validated
Probab=47.43 E-value=10 Score=46.28 Aligned_cols=48 Identities=19% Similarity=0.587 Sum_probs=32.6
Q ss_pred ccccccCCCcccC--CCCCceeecCCCCCCcchhhhHhHHh----hCCCCCCCccc
Q 004118 18 QVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKT 67 (773)
Q Consensus 18 ~~C~iCgd~Vg~~--~~Ge~FVAC~EC~FPVCRpCYeyErk----eG~q~CPqCkt 67 (773)
..|..||.++... ..|..|+.|. +||-|+--+-..++ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999875542 3466799996 57888755533321 13478999985
No 118
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=44.59 E-value=14 Score=27.00 Aligned_cols=28 Identities=29% Similarity=0.828 Sum_probs=12.0
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhh
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPC 50 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpC 50 (773)
.|.+|+..+.. ..+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~~----~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDG----GWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S------EEE-TTT-----HHH
T ss_pred cCCcCCCcCCC----CceEECccCCCccChhc
Confidence 58999988653 68899999999998877
No 119
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=44.54 E-value=1.6e+02 Score=25.76 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=19.6
Q ss_pred chhhhHHHHHhhccCCCCCEEEEecCCCCCC
Q 004118 534 KAGAMNALVRVSAVLTNGPFLLNLDCDHYIN 564 (773)
Q Consensus 534 KAGALNalLrvSa~ltngpfIlnlDcDh~~n 564 (773)
+...+|++++. ...+.+|+.+|+|=++.
T Consensus 58 ~~~~~~~~~~~---~~~~dWvl~~D~DEfl~ 85 (97)
T PF13704_consen 58 QRAWRNALIER---AFDADWVLFLDADEFLV 85 (97)
T ss_pred HHHHHHHHHHh---CCCCCEEEEEeeeEEEe
Confidence 34456666553 25889999999997653
No 120
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=44.48 E-value=9.5 Score=43.88 Aligned_cols=49 Identities=22% Similarity=0.617 Sum_probs=35.0
Q ss_pred ccccccCCCcccCCCCCceeecCCCC-CCcchhhhHhHHhhCCCCCCCccccccccC
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERKDGNQSCPQCKTRYKKHK 73 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~EC~-FPVCRpCYeyErkeG~q~CPqCkt~Ykr~k 73 (773)
..|..|..+|. |-.+|-|.||. |-+|-+|+.--..-|.. ||.-+|+-.+
T Consensus 15 y~C~~C~~dit----~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~ 64 (438)
T KOG0457|consen 15 YNCDYCSLDIT----GLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMD 64 (438)
T ss_pred CCCccHhHHhc----cceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeec
Confidence 48999998753 77899999998 99999999433333322 4556666443
No 121
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=44.06 E-value=26 Score=38.54 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=28.4
Q ss_pred CCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEcc
Q 004118 549 TNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQF 590 (773)
Q Consensus 549 tngpfIlnlDcDh~~nnp~~Lr~amcfflDp~~g~~vafVQt 590 (773)
+..+||+++|.|++ |.+++-+....+..--....+.+||=-
T Consensus 126 a~T~~v~~~DvD~~-ps~~l~~~l~~~~~~~~~~~~~a~VvP 166 (317)
T PF13896_consen 126 ARTDYVFLLDVDFL-PSPGLYEKLLRFARRNIDKSKTAFVVP 166 (317)
T ss_pred cCcceEEEecceee-eCcchHHHHHHHhhhhccCCceEEEEe
Confidence 56799999999996 777776666666532223446777643
No 122
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=43.67 E-value=16 Score=35.23 Aligned_cols=50 Identities=34% Similarity=0.759 Sum_probs=36.9
Q ss_pred ccCCccccccCCCccc--CCCCCceeecCCCCCCcchhhhHh---HHhhCCCCCCCccc
Q 004118 14 NVGGQVCQICGDNVGK--TVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKT 67 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~--~~~Ge~FVAC~EC~FPVCRpCYey---ErkeG~q~CPqCkt 67 (773)
...++.|..||....+ ...| -|+.|. .||.|+- |+- ...+....||+|+.
T Consensus 14 ~~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 14 LKTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred cccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 3568899999999665 4568 999994 6999996 221 12255689999996
No 123
>PRK03982 heat shock protein HtpX; Provisional
Probab=43.47 E-value=1.1e+02 Score=33.12 Aligned_cols=42 Identities=17% Similarity=0.010 Sum_probs=20.7
Q ss_pred HHHHhhccccccccccchhhhhhhhhhcCCCCCCCCceeEEEe
Q 004118 314 SWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVS 356 (773)
Q Consensus 314 ~wlL~q~~kw~Pi~R~t~~drL~~r~e~~~~~~~lP~VDVfV~ 356 (773)
.|++-.+.+..|+.+...++ |...+++-.....+|...|+|-
T Consensus 50 ~~i~~~~~~~~~l~~~~~p~-L~~~v~~la~~~g~~~p~v~v~ 91 (288)
T PRK03982 50 DKIVLASYNARIVSEEEAPE-LYRIVERLAERANIPKPKVAIV 91 (288)
T ss_pred HHHHHHhcCCEECChhhhHH-HHHHHHHHHHHcCCCCCeEEEE
Confidence 45555667888887654332 3222222111234555566554
No 124
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=43.31 E-value=10 Score=42.39 Aligned_cols=30 Identities=27% Similarity=0.924 Sum_probs=25.1
Q ss_pred CCCcchhhhHhHHhhCC--CCCCCcccccccc
Q 004118 43 AFPVCRPCYEYERKDGN--QSCPQCKTRYKKH 72 (773)
Q Consensus 43 ~FPVCRpCYeyErkeG~--q~CPqCkt~Ykr~ 72 (773)
+|-|||.|+-.-+-+-+ +-||-|.++|+..
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~ 32 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEE 32 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchh
Confidence 57899999977666666 9999999999754
No 125
>PHA02926 zinc finger-like protein; Provisional
Probab=41.23 E-value=31 Score=37.05 Aligned_cols=62 Identities=24% Similarity=0.505 Sum_probs=42.4
Q ss_pred ccCCccccccCCCcccC--CCCCceeecCCCCCCcchhhhHhHHhh-----CCCCCCCccccccccCCC
Q 004118 14 NVGGQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERKD-----GNQSCPQCKTRYKKHKGS 75 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~--~~Ge~FVAC~EC~FPVCRpCYeyErke-----G~q~CPqCkt~Ykr~kGs 75 (773)
.+....|.||=+.|--. ++..-|--=..|+-.-|..|..-=++. +...||.|+++++...=|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 34557899999987543 222233333467889999999766653 246799999999865433
No 126
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=40.21 E-value=19 Score=31.18 Aligned_cols=31 Identities=23% Similarity=0.601 Sum_probs=25.2
Q ss_pred cCCccccccCCC---cccCCCCCceeecCCCCCC
Q 004118 15 VGGQVCQICGDN---VGKTVDGNPFVACDVCAFP 45 (773)
Q Consensus 15 ~~~~~C~iCgd~---Vg~~~~Ge~FVAC~EC~FP 45 (773)
..|-+|.-|+.- +...++|...|-|-+|+|.
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 567899999854 4556899999999999984
No 127
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=40.18 E-value=11 Score=28.34 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=12.8
Q ss_pred HhHHhhCCCCCCCcccccc
Q 004118 52 EYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 52 eyErkeG~q~CPqCkt~Yk 70 (773)
.|+-++....||.|+.+-.
T Consensus 10 ~y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 10 IYDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred EECCCcCCCcCcCCCCcHH
Confidence 3444446789999987644
No 128
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=38.53 E-value=34 Score=26.85 Aligned_cols=43 Identities=23% Similarity=0.716 Sum_probs=31.5
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccc
Q 004118 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT 67 (773)
Q Consensus 20 C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt 67 (773)
|.+|-... +++..+++ = .|+=-+|..|.+--- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l-~-~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRL-T-SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEE-c-ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88999888 33333333 2 689999999996554 67789999985
No 129
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=37.56 E-value=26 Score=27.76 Aligned_cols=45 Identities=29% Similarity=0.778 Sum_probs=32.5
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh-----hCCCCCCCccc
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-----DGNQSCPQCKT 67 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErk-----eG~q~CPqCkt 67 (773)
+|+|||. ..+++..|.|..|.--+=..|.....+ ++.=.||.|..
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899999 666778999999987766677765432 34567777753
No 130
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=37.11 E-value=18 Score=42.93 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=25.5
Q ss_pred ccCCccccccCCCcccCCCCCc-----------eee-----cCCCCCCcchhhhHhH
Q 004118 14 NVGGQVCQICGDNVGKTVDGNP-----------FVA-----CDVCAFPVCRPCYEYE 54 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~-----------FVA-----C~EC~FPVCRpCYeyE 54 (773)
.....+|.|||.+-.++.+-.. |++ =.-=.||||..||..-
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l 251 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL 251 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH
Confidence 3455689999999544444322 222 0123789999999553
No 131
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=36.24 E-value=73 Score=36.49 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=29.1
Q ss_pred cccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHH
Q 004118 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC 574 (773)
Q Consensus 531 hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amc 574 (773)
.+.|+-.|=-++-... +.+..||-.+|||.|+|- ++.+-+-
T Consensus 142 R~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyiPG--aV~EYvk 182 (393)
T PRK14503 142 RSGKGEGMIIGLLLAK-ALGARYVGFVDADNYIPG--AVNEYVK 182 (393)
T ss_pred ecCcchHHHHHHHHHH-HhCCCeEeEeecccCCCc--hHHHHHH
Confidence 3468877766554433 358899999999999864 5666544
No 132
>PF11077 DUF2616: Protein of unknown function (DUF2616); InterPro: IPR020201 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf52; it is a family of uncharacterised viral proteins.
Probab=36.17 E-value=12 Score=38.56 Aligned_cols=26 Identities=27% Similarity=0.743 Sum_probs=19.8
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCc-chh
Q 004118 20 CQICGDNVGKTVDGNPFVACDVCAFPV-CRP 49 (773)
Q Consensus 20 C~iCgd~Vg~~~~Ge~FVAC~EC~FPV-CRp 49 (773)
|+-|... .+.+.-..|+.|-||+ |-.
T Consensus 55 C~fC~~~----~~~~~~~~C~~CfFPl~c~~ 81 (173)
T PF11077_consen 55 CDFCYAV----NTETDRLFCKQCFFPLYCTN 81 (173)
T ss_pred hhHHHhc----ccchhHHHHHhccccccccc
Confidence 9999875 2344578899999999 654
No 133
>PRK07219 DNA topoisomerase I; Validated
Probab=36.13 E-value=21 Score=44.22 Aligned_cols=53 Identities=23% Similarity=0.615 Sum_probs=32.3
Q ss_pred CccccccCCCcccC--CCCCceeecCCCCCCcchhhhHhHH----hhCCCCCCCcccccccc
Q 004118 17 GQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYER----KDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~--~~Ge~FVAC~EC~FPVCRpCYeyEr----keG~q~CPqCkt~Ykr~ 72 (773)
...|..||..+.+. ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 45788888765442 3455 88886 6777753332211 12347899999876543
No 134
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.07 E-value=51 Score=39.62 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=41.6
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 004118 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 396 (773)
Q Consensus 345 ~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~ 396 (773)
...||++-|+|+-+| |...+...||-|++..-=+.---.|.|.||+...
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 346999999999999 9999999999999887655556679999998765
No 135
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=35.99 E-value=19 Score=36.38 Aligned_cols=45 Identities=22% Similarity=0.527 Sum_probs=40.6
Q ss_pred CcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 26 NVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 26 ~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
-||+..+|-.-+-|.-|+|.-|..=.|-++..-+-.=|+|.-+|-
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~i 121 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYI 121 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhh
Confidence 478889999999999999999999888888888889999999995
No 136
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.68 E-value=40 Score=29.02 Aligned_cols=48 Identities=23% Similarity=0.646 Sum_probs=34.8
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
.-|..|+.++--+. .+-++-=.||-| |.+|-|-.. +.+||-|+--+-+
T Consensus 6 pnCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 36999999865443 255666679988 999997554 4799999876543
No 137
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=35.40 E-value=12 Score=35.57 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=17.8
Q ss_pred eecCCCCCCcchhhhHhHHhhCCCCCCCccccc
Q 004118 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (773)
Q Consensus 37 VAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Y 69 (773)
+-|+.|+ ++++..+-.-.||+|+.+=
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 71 AWCWDCS-------QVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEcccCC-------CEEecCCcCccCcCCCCCC
Confidence 4576666 5566665666799999753
No 138
>PRK11827 hypothetical protein; Provisional
Probab=35.23 E-value=26 Score=30.34 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=19.1
Q ss_pred CcchhhhHhHHhhCCCCCCCccccccccCCCCc
Q 004118 45 PVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPA 77 (773)
Q Consensus 45 PVCRpCYeyErkeG~q~CPqCkt~Ykr~kGs~r 77 (773)
|+|+-=.+|...+..-+|..|+-.|--..|-|-
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIPV 44 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIPV 44 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCccc
Confidence 445444444433334678888888866555543
No 139
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=35.08 E-value=16 Score=27.62 Aligned_cols=25 Identities=32% Similarity=0.821 Sum_probs=12.3
Q ss_pred ccccccCCCcccCCCCCceeecCCCCC
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDVCAF 44 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~EC~F 44 (773)
..|..|+.+-.+ +||.+|| |.+|++
T Consensus 3 p~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 3 PKCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp ---TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCCccee-ccCCEEe-CCcccc
Confidence 358888888666 7788776 888875
No 140
>PRK14973 DNA topoisomerase I; Provisional
Probab=34.40 E-value=27 Score=44.05 Aligned_cols=49 Identities=20% Similarity=0.548 Sum_probs=32.1
Q ss_pred CccccccCCCcccC--CCCCceeecCCCCCCcchhhhHhHHh-hC-----CCCCCCcccc
Q 004118 17 GQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERK-DG-----NQSCPQCKTR 68 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~--~~Ge~FVAC~EC~FPVCRpCYeyErk-eG-----~q~CPqCkt~ 68 (773)
...|..||.++-+. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.+
T Consensus 588 ~~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 588 IGPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred cccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 35799999876432 3454 99996 66888855544222 12 3689999973
No 141
>PRK12495 hypothetical protein; Provisional
Probab=33.20 E-value=19 Score=38.35 Aligned_cols=30 Identities=33% Similarity=0.840 Sum_probs=22.8
Q ss_pred ceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 35 ~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
+-.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 41 sa~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 41 TNAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred chhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 3455777777774 44899999999999864
No 142
>PRK11595 DNA utilization protein GntX; Provisional
Probab=32.45 E-value=30 Score=36.10 Aligned_cols=39 Identities=23% Similarity=0.585 Sum_probs=25.6
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~ 68 (773)
...|.+||..+..++ ..+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCc
Confidence 357999998874321 23788887554332 3589999865
No 143
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=32.26 E-value=59 Score=28.23 Aligned_cols=50 Identities=24% Similarity=0.506 Sum_probs=35.8
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCC-CCCCCccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGN-QSCPQCKT 67 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~-q~CPqCkt 67 (773)
...+|..||-.|.-.+.+ +-.+|.+|+=-+=+=|. .-||-++ -.||.|+-
T Consensus 6 ~~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred cCccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 445899999998666666 44579999877444465 5577776 57999973
No 144
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.09 E-value=34 Score=39.29 Aligned_cols=51 Identities=22% Similarity=0.604 Sum_probs=35.2
Q ss_pred ccccCC-ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 12 IKNVGG-QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 12 ~~~~~~-~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
+..+.. ..|.||.+..- ++++ -.|+--.|..|...-... ...||.|++.+.
T Consensus 20 l~~Le~~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred ccccccccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 334333 48999987642 2333 368999999999755443 458999999874
No 145
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.08 E-value=63 Score=37.57 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=42.2
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 004118 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (773)
Q Consensus 346 ~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt 398 (773)
.+||+-.|+|+-.| |---....||.|+|.--=+.=-..|++.||+..+.+
T Consensus 121 ~dlp~TsviITfHN---EARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dpe 170 (559)
T KOG3738|consen 121 VDLPPTSVIITFHN---EARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPE 170 (559)
T ss_pred cCCCCceEEEEecc---HHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChH
Confidence 57999999999998 999999999999998654333567999999999743
No 146
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=32.06 E-value=37 Score=27.65 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=25.4
Q ss_pred cccccCCCcccCCCCCceeecCCCC-CCcchhhhHhHHh
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERK 56 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~-FPVCRpCYeyErk 56 (773)
.|.+||-++. .+..-|-.++ +-+|.+||+-.|-
T Consensus 2 ~C~~Cg~D~t-----~vryh~~~~~~~dLC~~CF~~G~f 35 (45)
T cd02336 2 HCFTCGNDCT-----RVRYHNLKAKKYDLCPSCYQEGRF 35 (45)
T ss_pred cccCCCCccC-----ceEEEecCCCccccChHHHhCcCC
Confidence 6999999974 2667777776 9999999965443
No 147
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=31.71 E-value=15 Score=31.63 Aligned_cols=13 Identities=38% Similarity=0.968 Sum_probs=8.1
Q ss_pred CCCCCCccccccc
Q 004118 59 NQSCPQCKTRYKK 71 (773)
Q Consensus 59 ~q~CPqCkt~Ykr 71 (773)
.-+||+||.-|..
T Consensus 44 ~PVCP~Ck~iye~ 56 (58)
T PF11238_consen 44 FPVCPECKEIYES 56 (58)
T ss_pred CCCCcCHHHHHHh
Confidence 3556777776654
No 148
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=31.43 E-value=24 Score=29.48 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=20.6
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPV 46 (773)
.-.|..||.+|.++. ...-+.|..|+|.|
T Consensus 6 ~Y~C~~Cg~~~~~~~-~~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQ-ETRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhh-ccCceeCCCCCcEE
Confidence 347999999995443 22348898898865
No 149
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=31.07 E-value=1.9e+02 Score=33.21 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=29.0
Q ss_pred cccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHH
Q 004118 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC 574 (773)
Q Consensus 531 hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amc 574 (773)
.+.|+-.|=-++-... +.+..||-.+|||.|+|- ++.+-+-
T Consensus 141 R~GKgEGMiiG~lLAk-~~g~~YVGFiDaDNyiPG--aV~EYvk 181 (381)
T TIGR02460 141 RSGKGEGMLLGLLLAK-AIGAEYVGFVDADNYFPG--AVNEYVK 181 (381)
T ss_pred ecCcchHHHHHHHHHH-HhCCceEeEeecccCCCc--hHHHHHH
Confidence 4568877766554433 358899999999999864 5666443
No 150
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=30.67 E-value=28 Score=27.08 Aligned_cols=27 Identities=33% Similarity=0.694 Sum_probs=19.2
Q ss_pred CCcc--ccccCCCcccCCCCCceeecCCCCC
Q 004118 16 GGQV--CQICGDNVGKTVDGNPFVACDVCAF 44 (773)
Q Consensus 16 ~~~~--C~iCgd~Vg~~~~Ge~FVAC~EC~F 44 (773)
.+.. |.+||.......||- .-|.+|+.
T Consensus 5 ~~~~~~C~~C~~~~~~~~dG~--~yC~~cG~ 33 (36)
T PF11781_consen 5 RGPNEPCPVCGSRWFYSDDGF--YYCDRCGH 33 (36)
T ss_pred ccCCCcCCCCCCeEeEccCCE--EEhhhCce
Confidence 4445 889999877778886 44777764
No 151
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=30.20 E-value=16 Score=30.35 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=4.0
Q ss_pred CCCCcccc
Q 004118 61 SCPQCKTR 68 (773)
Q Consensus 61 ~CPqCkt~ 68 (773)
.||.|+.+
T Consensus 36 ~CP~C~a~ 43 (50)
T cd00730 36 VCPVCGAG 43 (50)
T ss_pred CCCCCCCc
Confidence 55555443
No 152
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=29.99 E-value=43 Score=24.24 Aligned_cols=24 Identities=33% Similarity=0.960 Sum_probs=14.4
Q ss_pred ccccCCCcccCCCCCceeecCCCCC
Q 004118 20 CQICGDNVGKTVDGNPFVACDVCAF 44 (773)
Q Consensus 20 C~iCgd~Vg~~~~Ge~FVAC~EC~F 44 (773)
|..||-.|--.+.|-.| .|..|||
T Consensus 1 C~sC~~~i~~r~~~v~f-~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPF-PCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceE-eCCCCCC
Confidence 55677665544445554 4777776
No 153
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=29.67 E-value=38 Score=28.68 Aligned_cols=25 Identities=32% Similarity=0.720 Sum_probs=15.4
Q ss_pred ccccccCCCcccCC--CCCceeecCCCC
Q 004118 18 QVCQICGDNVGKTV--DGNPFVACDVCA 43 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~--~Ge~FVAC~EC~ 43 (773)
..|..||..|-+.. .|+ .|-|.+|+
T Consensus 3 ~~CP~CG~~iev~~~~~Ge-iV~Cp~CG 29 (54)
T TIGR01206 3 FECPDCGAEIELENPELGE-LVICDECG 29 (54)
T ss_pred cCCCCCCCEEecCCCccCC-EEeCCCCC
Confidence 37899999988753 355 33444343
No 154
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=29.45 E-value=1.8e+02 Score=28.20 Aligned_cols=53 Identities=21% Similarity=0.548 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhccccc-----------c-----hHHHHHHHHHHHHHHHHHHHHhhc
Q 004118 268 INPYRMVIFLRLIILGIFLYYRIKNPVH-----------N-----AIALWLISVICEIWFAISWIFDQF 320 (773)
Q Consensus 268 ~~~yR~~i~~~lv~l~~yl~wRi~~~~~-----------~-----a~~lWl~~~~~Eiwfa~~wlL~q~ 320 (773)
+-|||-..+...++++.|-+||+..+.. . -..+|++.++.=+..++-|+...|
T Consensus 47 lepyRp~fi~~tl~~lg~a~~~~yr~~~~c~~g~~C~~~~~~~~~~~~lwi~t~~vl~~l~~py~~p~f 115 (116)
T PF02411_consen 47 LEPYRPYFIALTLLFLGYAFWRLYRPRKACEPGSACARPQSRRQTKILLWIVTVLVLLLLAFPYYAPLF 115 (116)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678876666555566666676653311 0 135798888888888888876543
No 155
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=29.28 E-value=16 Score=26.14 Aligned_cols=15 Identities=27% Similarity=0.733 Sum_probs=10.3
Q ss_pred HHhhCCCCCCCcccc
Q 004118 54 ERKDGNQSCPQCKTR 68 (773)
Q Consensus 54 ErkeG~q~CPqCkt~ 68 (773)
+...+.+.||.|+++
T Consensus 11 ~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 11 EIDPDAKFCPNCGAK 25 (26)
T ss_pred cCCcccccChhhCCC
Confidence 346667788888765
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.29 E-value=40 Score=41.03 Aligned_cols=11 Identities=27% Similarity=0.899 Sum_probs=6.6
Q ss_pred CCCCCCccccc
Q 004118 59 NQSCPQCKTRY 69 (773)
Q Consensus 59 ~q~CPqCkt~Y 69 (773)
...||.|+...
T Consensus 422 p~~Cp~Cgs~~ 432 (665)
T PRK14873 422 DWRCPRCGSDR 432 (665)
T ss_pred CccCCCCcCCc
Confidence 45677776543
No 157
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.25 E-value=16 Score=41.32 Aligned_cols=45 Identities=29% Similarity=0.737 Sum_probs=37.6
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccc
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Y 69 (773)
+|.||-+=|-.+- -=.||+--+|+.|.--..+.||..||-|++..
T Consensus 45 ~c~icl~llk~tm------ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKTM------TTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhhc------ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 7888887665542 22489999999999999999999999999876
No 158
>PF12773 DZR: Double zinc ribbon
Probab=27.89 E-value=41 Score=26.79 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=6.9
Q ss_pred CccccccCCCcc
Q 004118 17 GQVCQICGDNVG 28 (773)
Q Consensus 17 ~~~C~iCgd~Vg 28 (773)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 445666666555
No 159
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.55 E-value=38 Score=37.23 Aligned_cols=22 Identities=41% Similarity=1.058 Sum_probs=17.4
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCC
Q 004118 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCA 43 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~ 43 (773)
...+..|.-||+ .-|++|-.|.
T Consensus 226 ~~~~~~C~~CGg--------~rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGG--------ARFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCC--------cceEecCCCC
Confidence 566789999985 4799998884
No 160
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=27.38 E-value=18 Score=25.55 Aligned_cols=13 Identities=38% Similarity=0.928 Sum_probs=6.3
Q ss_pred hhCCCCCCCcccc
Q 004118 56 KDGNQSCPQCKTR 68 (773)
Q Consensus 56 keG~q~CPqCkt~ 68 (773)
.++.+-||+|+++
T Consensus 10 ~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 10 EDDAKFCPNCGTP 22 (23)
T ss_pred CCcCcchhhhCCc
Confidence 3444455555543
No 161
>PTZ00293 thymidine kinase; Provisional
Probab=27.33 E-value=29 Score=36.60 Aligned_cols=35 Identities=20% Similarity=0.572 Sum_probs=22.5
Q ss_pred ccccccCCCccc----CCCCCc-eeecCCCCCCcchhhhH
Q 004118 18 QVCQICGDNVGK----TVDGNP-FVACDVCAFPVCRPCYE 52 (773)
Q Consensus 18 ~~C~iCgd~Vg~----~~~Ge~-FVAC~EC~FPVCRpCYe 52 (773)
.+|..||.+--. ..+|+. .+-=+|=--|+||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 589999988433 334444 22223445789999995
No 162
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=27.24 E-value=1.5e+02 Score=33.82 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=37.0
Q ss_pred hhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcC------------CC-------CCcceEEEccCcccc
Q 004118 536 GAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD------------PN-------LGKHVCYVQFPQRFD 595 (773)
Q Consensus 536 GALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflD------------p~-------~g~~vafVQtPQrF~ 595 (773)
..+-++|+. + +.++|++.|||+=.-+++.+++.+-.+.+ +. ....+-.|||||-|.
T Consensus 85 ~SV~~gL~~---l-~~d~VLVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~~tldR~~l~~~QTPQ~f~ 159 (378)
T PRK09382 85 ESVRNALEA---L-DSEYVLIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRANETVDREGLKLIQTPQLSR 159 (378)
T ss_pred HHHHHHHHh---c-CCCeEEEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEeeeEcCcccEEEEECCCCCC
Confidence 345555553 2 34899999999854578888887765432 10 123667789999994
No 163
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=27.23 E-value=39 Score=42.23 Aligned_cols=57 Identities=23% Similarity=0.438 Sum_probs=32.9
Q ss_pred cCCccccccCCCccc---CCCCCceeecCCCCCCcchhhhHhHH-----------hhCCCCCCCccccccccCC
Q 004118 15 VGGQVCQICGDNVGK---TVDGNPFVACDVCAFPVCRPCYEYER-----------KDGNQSCPQCKTRYKKHKG 74 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~---~~~Ge~FVAC~EC~FPVCRpCYeyEr-----------keG~q~CPqCkt~Ykr~kG 74 (773)
.....|..||..-.+ .-.| .|++|. +||-|+-=....+ ......||.|+......+|
T Consensus 590 ~~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~g 660 (860)
T PRK06319 590 VTEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHG 660 (860)
T ss_pred ccCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEecC
Confidence 345689999864222 2345 699994 5777742111111 1124689999876655443
No 164
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=26.78 E-value=42 Score=29.86 Aligned_cols=31 Identities=26% Similarity=0.701 Sum_probs=24.7
Q ss_pred cCCccccccCCC--ccc-CCCCCceeecCCCCCC
Q 004118 15 VGGQVCQICGDN--VGK-TVDGNPFVACDVCAFP 45 (773)
Q Consensus 15 ~~~~~C~iCgd~--Vg~-~~~Ge~FVAC~EC~FP 45 (773)
..|-+|.-|+.- |.+ .++|...+-|-+|+|-
T Consensus 6 IAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 6 IAGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred ecCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 467899999854 544 6889999999999984
No 165
>PRK08359 transcription factor; Validated
Probab=26.76 E-value=22 Score=36.54 Aligned_cols=30 Identities=37% Similarity=1.050 Sum_probs=19.4
Q ss_pred ccccccCCCcccC-----CCCCceeecCCCCCCcchhhh-HhHH
Q 004118 18 QVCQICGDNVGKT-----VDGNPFVACDVCAFPVCRPCY-EYER 55 (773)
Q Consensus 18 ~~C~iCgd~Vg~~-----~~Ge~FVAC~EC~FPVCRpCY-eyEr 55 (773)
..|.|||.+|--. .+|-. .-||..|| .|-.
T Consensus 7 ~~CEiCG~~i~g~~~~v~ieGae--------l~VC~~Ca~k~G~ 42 (176)
T PRK08359 7 RYCEICGAEIRGPGHRIRIEGAE--------LLVCDRCYEKYGR 42 (176)
T ss_pred ceeecCCCccCCCCeEEEEcCeE--------EehHHHHHHHhCC
Confidence 3599999997422 24443 45778888 6644
No 166
>PRK13751 putative mercuric transport protein; Provisional
Probab=26.62 E-value=1.9e+02 Score=28.14 Aligned_cols=52 Identities=15% Similarity=0.489 Sum_probs=31.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhcccc-----------c-----chHHHHHHHHHHHHHHHHHHHHh
Q 004118 267 RINPYRMVIFLRLIILGIFLYYRIKNPV-----------H-----NAIALWLISVICEIWFAISWIFD 318 (773)
Q Consensus 267 ~~~~yR~~i~~~lv~l~~yl~wRi~~~~-----------~-----~a~~lWl~~~~~Eiwfa~~wlL~ 318 (773)
.+.|||...++..++.+.|-+||+..+. + .-..+|++.++.=+..+|-|++.
T Consensus 46 ~lepyr~~fi~~a~~~l~~a~~~~yr~~~~C~~g~~Ca~p~~rk~~k~~~Wi~~vlvl~~L~fPy~~p 113 (116)
T PRK13751 46 VLEPYRPIFIGAALVALFFAWRRIYRPAAACKPGEVCAIPQVRATYKLIFWIVAALVLVALGFPYVMP 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccccCCCCccCCcccchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4568997765554444556666765321 1 11457888777777777776654
No 167
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.59 E-value=34 Score=34.10 Aligned_cols=44 Identities=27% Similarity=0.674 Sum_probs=35.6
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT 67 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt 67 (773)
.-..|.||-+..--. ....|+--.|+.|-+.-.. +.-.||.|+.
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 445899998875443 5667899999999988877 8899999993
No 168
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=26.28 E-value=28 Score=33.64 Aligned_cols=52 Identities=31% Similarity=0.643 Sum_probs=33.0
Q ss_pred cCCccccccCCC--cccCCCC-CceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 15 VGGQVCQICGDN--VGKTVDG-NPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 15 ~~~~~C~iCgd~--Vg~~~~G-e~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
..+..|.-||.. |....++ -.|.+| +.||.||-=.- .+-..+.||+|.-+..
T Consensus 58 ~~~~~Cp~C~~~~~~~k~~~~~~~f~~~--~~~Pkc~~~~~--~~~~~~~cp~c~~~~~ 112 (140)
T COG0551 58 KTGVKCPKCGKGLLVLKKGRFGKNFLGC--SNYPKCRFTEK--PKPKEKKCPKCGSRKL 112 (140)
T ss_pred cCceeCCCCCCCceEEEeccCCceEEee--cCCCcCceeec--CCcccccCCcCCCcee
Confidence 445688889953 3333332 379999 79999985332 3333355999997443
No 169
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.28 E-value=26 Score=30.62 Aligned_cols=17 Identities=41% Similarity=1.015 Sum_probs=14.7
Q ss_pred HhhCCCCCCCccccccc
Q 004118 55 RKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 55 rkeG~q~CPqCkt~Ykr 71 (773)
-++|.-.||=|.|+|+-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 46888999999999973
No 170
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.19 E-value=32 Score=40.23 Aligned_cols=49 Identities=24% Similarity=0.588 Sum_probs=29.7
Q ss_pred CCCCC-ceeecCCCCCC-cchhhh---HhHHhhCCCCCCCccccccccCCCCcc
Q 004118 30 TVDGN-PFVACDVCAFP-VCRPCY---EYERKDGNQSCPQCKTRYKKHKGSPAI 78 (773)
Q Consensus 30 ~~~Ge-~FVAC~EC~FP-VCRpCY---eyErkeG~q~CPqCkt~Ykr~kGs~rv 78 (773)
+-.|- .++.|..|+.. .|.-|= .|-++++.-.|..|+..++-..-||.=
T Consensus 206 nrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C 259 (505)
T TIGR00595 206 NRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQC 259 (505)
T ss_pred eCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCC
Confidence 44555 46777777765 366663 333455556677777776666666643
No 171
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=26.05 E-value=47 Score=37.99 Aligned_cols=34 Identities=26% Similarity=0.684 Sum_probs=22.8
Q ss_pred ceeecCCCCCCcchhhhHhHHhhC-CCCCCCcccccccc
Q 004118 35 PFVACDVCAFPVCRPCYEYERKDG-NQSCPQCKTRYKKH 72 (773)
Q Consensus 35 ~FVAC~EC~FPVCRpCYeyErkeG-~q~CPqCkt~Ykr~ 72 (773)
..++|+||+.-+=+| ..+.| .-.||+|++.-.|+
T Consensus 12 ~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~ 46 (403)
T TIGR00155 12 KHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVG 46 (403)
T ss_pred CeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCC
Confidence 368899998764333 12233 35799999998665
No 172
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=25.82 E-value=36 Score=27.54 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=30.3
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhh
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD 57 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErke 57 (773)
.+.|.+|+...++.... .-|.-|+--+|..|-.+....
T Consensus 2 ~~~C~~C~~~F~~~~rk---~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 2 ASSCMGCGKPFTLTRRR---HHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred cCcCcccCccccCCccc---cccCcCcCCcChHHcCCeeec
Confidence 46899999998885433 569999999999999887653
No 173
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=25.75 E-value=51 Score=25.24 Aligned_cols=31 Identities=19% Similarity=0.463 Sum_probs=23.0
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE 54 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyE 54 (773)
...|..|++.. +-.-|.+|..++|..|....
T Consensus 3 ~~~C~~H~~~~-------~~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 3 EPKCPEHPEEP-------LSLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SSB-SSTTTSB-------EEEEETTTTEEEEHHHHHTS
T ss_pred CccCccCCccc-------eEEEecCCCCccCccCCCCC
Confidence 45777777542 56779999999999999653
No 174
>PF04641 Rtf2: Rtf2 RING-finger
Probab=25.63 E-value=59 Score=34.82 Aligned_cols=49 Identities=22% Similarity=0.574 Sum_probs=37.1
Q ss_pred CCccccccCCCcccCCCCC-ceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 16 GGQVCQICGDNVGKTVDGN-PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge-~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
..-+|.|++... +|. -||+=--||=-+|..|.+-- + ....||.|.++|.
T Consensus 112 ~~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 112 GRFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFT 161 (260)
T ss_pred ceeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccc
Confidence 344899998776 454 58888889988888888443 4 4567999999996
No 175
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.35 E-value=25 Score=33.55 Aligned_cols=28 Identities=14% Similarity=0.533 Sum_probs=16.1
Q ss_pred eecCCCCCCcchhhhHhHHhhCC-CCCCCccccccc
Q 004118 37 VACDVCAFPVCRPCYEYERKDGN-QSCPQCKTRYKK 71 (773)
Q Consensus 37 VAC~EC~FPVCRpCYeyErkeG~-q~CPqCkt~Ykr 71 (773)
+-|+.|+ ++++..+-. ..||+|+.+-.+
T Consensus 72 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 72 LECKDCS-------HVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEhhhCC-------CccccCCccCCcCcCCCCCceE
Confidence 4466665 334444322 359999987543
No 176
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=25.10 E-value=66 Score=28.09 Aligned_cols=48 Identities=31% Similarity=0.638 Sum_probs=33.7
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCC-CCCCCcc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGN-QSCPQCK 66 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~-q~CPqCk 66 (773)
..+|..||-.|-..+.+-.| +|..|+=-+-.-|- --||-|+ -.||.|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 46899999999888877666 69999933322232 2257676 5799886
No 177
>PRK10220 hypothetical protein; Provisional
Probab=24.58 E-value=56 Score=31.55 Aligned_cols=25 Identities=32% Similarity=0.879 Sum_probs=15.1
Q ss_pred CcchhhhHhHHhhCCCCCCCcccccc
Q 004118 45 PVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 45 PVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
|-|..=|-||-.+ .-+||.|.-...
T Consensus 7 P~C~seytY~d~~-~~vCpeC~hEW~ 31 (111)
T PRK10220 7 PKCNSEYTYEDNG-MYICPECAHEWN 31 (111)
T ss_pred CCCCCcceEcCCC-eEECCcccCcCC
Confidence 4444446666433 378888886664
No 178
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=24.17 E-value=24 Score=33.54 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=16.1
Q ss_pred eecCCCCCCcchhhhHhHHhhCC-CCCCCcccccc
Q 004118 37 VACDVCAFPVCRPCYEYERKDGN-QSCPQCKTRYK 70 (773)
Q Consensus 37 VAC~EC~FPVCRpCYeyErkeG~-q~CPqCkt~Yk 70 (773)
.-|+.|+ ++++..+-. -.||+|+.+--
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~ 98 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDML 98 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCCc
Confidence 4466666 244444443 56999997643
No 179
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=24.07 E-value=50 Score=31.80 Aligned_cols=25 Identities=28% Similarity=0.786 Sum_probs=14.6
Q ss_pred CcchhhhHhHHhhCCCCCCCcccccc
Q 004118 45 PVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 45 PVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
|-|..=|-||--+ .-+||.|.--.-
T Consensus 6 P~C~seytY~dg~-~~iCpeC~~EW~ 30 (109)
T TIGR00686 6 PKCNSEYTYHDGT-QLICPSCLYEWN 30 (109)
T ss_pred CcCCCcceEecCC-eeECcccccccc
Confidence 3444445565433 378888886663
No 180
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=23.96 E-value=48 Score=39.60 Aligned_cols=41 Identities=29% Similarity=0.613 Sum_probs=24.2
Q ss_pred CccccccCCCcccCCC----------CCceee--cCCCCCCcchhhhHhHHhhC
Q 004118 17 GQVCQICGDNVGKTVD----------GNPFVA--CDVCAFPVCRPCYEYERKDG 58 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~----------Ge~FVA--C~EC~FPVCRpCYeyErkeG 58 (773)
..+|.|||.+--++.+ =.-|++ =.-=.||||+.||.+ ...|
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~~-l~~G 222 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYKD-VIYG 222 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHHH-HHHH
Confidence 5799999997332222 112333 112269999999954 3444
No 181
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=23.75 E-value=40 Score=33.54 Aligned_cols=43 Identities=40% Similarity=0.922 Sum_probs=25.7
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH-HhhCCCCCCCccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKT 67 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyE-rkeG~q~CPqCkt 67 (773)
.+..|..|| |.-||+|.+|.= -|+--.+.. ...+-.-||.|++
T Consensus 98 ~~~~C~~Cg--------g~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCG--------GARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCC--------CcCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 456799998 447999988852 122211110 1233478999875
No 182
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=23.68 E-value=4.2e+02 Score=26.51 Aligned_cols=73 Identities=22% Similarity=0.218 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCchhhhhhhcccccccCCchh
Q 004118 366 LVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSF 445 (773)
Q Consensus 366 ~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~YFs~k~d~~~~k~~p~f 445 (773)
-.+..|++..++..|-.+.+.+||.|=++.. |..+.+.. .+. ......+.
T Consensus 52 S~~l~~ll~~l~~~~~p~~~~l~iiD~k~~~--l~~~~~~~-------------~~~---------------~~~~~~~~ 101 (205)
T PF01580_consen 52 STLLRTLLLSLALTYSPDDVQLYIIDPKGSD--LAPLADLP-------------HVA---------------AVAVATDP 101 (205)
T ss_dssp HHHHHHHHHHHHTT--TTTEEEEEE-TTSSC--CGGGTT-T-------------TBS---------------S-S-B-SH
T ss_pred cHHHHHHHHHHHHHhcCCccEEEEEcCCccc--cchhhhhh-------------hhc---------------cccccccH
Confidence 4566678888888887789999999988764 22222200 000 00011233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004118 446 VKDRRAMKREYEEFKIRINGLVA 468 (773)
Q Consensus 446 ~~err~mKreYee~k~RI~~L~~ 468 (773)
-+=.+.++..++||+.|.+.+.+
T Consensus 102 ~~~~~~l~~l~~em~~R~~~l~~ 124 (205)
T PF01580_consen 102 EEILRLLEELVEEMERRQALLRE 124 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788899999999977753
No 183
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=23.66 E-value=26 Score=40.21 Aligned_cols=63 Identities=24% Similarity=0.514 Sum_probs=40.1
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcc-hhhhHhHHhhCCCCCCCccccc---ccc--CCCCcccCC
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVC-RPCYEYERKDGNQSCPQCKTRY---KKH--KGSPAILGD 81 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVC-RpCYeyErkeG~q~CPqCkt~Y---kr~--kGs~rv~gd 81 (773)
-+-.|..||+-+|+...----.+|-. -.= |==|||=-+.|.+.||-|+.-- +|. -|||-|+.+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsH---IfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vese 432 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSH---IFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESE 432 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhH---HHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccc
Confidence 34579999999999854444455521 111 1126677899999999998321 332 356777655
No 184
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.60 E-value=26 Score=34.20 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=8.8
Q ss_pred hCCCCCCCcccc
Q 004118 57 DGNQSCPQCKTR 68 (773)
Q Consensus 57 eG~q~CPqCkt~ 68 (773)
...-.||+|+.+
T Consensus 105 ~~~~~CP~Cgs~ 116 (135)
T PRK03824 105 HAFLKCPKCGSR 116 (135)
T ss_pred ccCcCCcCCCCC
Confidence 344569999976
No 185
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=23.41 E-value=25 Score=29.97 Aligned_cols=17 Identities=29% Similarity=0.800 Sum_probs=13.9
Q ss_pred hhCCCCCCCcccccccc
Q 004118 56 KDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 56 keG~q~CPqCkt~Ykr~ 72 (773)
++.--+||.|+++|.|-
T Consensus 18 ~dDiVvCp~CgapyHR~ 34 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHRD 34 (54)
T ss_pred CCCEEECCCCCCcccHH
Confidence 56667999999999873
No 186
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=23.38 E-value=37 Score=29.88 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=16.9
Q ss_pred ceeecCCCCCCcchhhhHhHHhhCCCCCCCcccc
Q 004118 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (773)
Q Consensus 35 ~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~ 68 (773)
.|.||.+|.|-+ ++ +.||-|+..
T Consensus 4 ~~~AC~~C~~i~----------~~-~~Cp~Cgs~ 26 (64)
T PRK06393 4 QYRACKKCKRLT----------PE-KTCPVHGDE 26 (64)
T ss_pred hhhhHhhCCccc----------CC-CcCCCCCCC
Confidence 467888887776 23 599999874
No 187
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=23.33 E-value=53 Score=27.20 Aligned_cols=26 Identities=31% Similarity=0.691 Sum_probs=17.1
Q ss_pred cccccCCC-cccCC-CCC-----ceeecCCCCC
Q 004118 19 VCQICGDN-VGKTV-DGN-----PFVACDVCAF 44 (773)
Q Consensus 19 ~C~iCgd~-Vg~~~-~Ge-----~FVAC~EC~F 44 (773)
-|.-||.. |.+.. .+. .+|.|++|+.
T Consensus 5 PCPFCG~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 5 PCPFCGSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CCCCCCCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 59999865 33332 222 7899999876
No 188
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=23.31 E-value=56 Score=24.04 Aligned_cols=28 Identities=29% Similarity=0.844 Sum_probs=20.9
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhh
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPC 50 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpC 50 (773)
.|.+|+.++- |..|--|.+|.|-+..-|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKID----GFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcC----CCEeEEeCCCCCeEcCcc
Confidence 5899987643 433899999999876655
No 189
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=23.17 E-value=56 Score=30.99 Aligned_cols=34 Identities=26% Similarity=0.687 Sum_probs=25.1
Q ss_pred CCCCceeecCCCCCC--cchhhhHhHHhhCCCCCCCccccccc
Q 004118 31 VDGNPFVACDVCAFP--VCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 31 ~~Ge~FVAC~EC~FP--VCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
+-|-.-..|.+|+.- ++..| +|..||+|..++++
T Consensus 37 ~~G~~~~~C~~Cg~~~~~~~SC-------k~R~CP~C~~~~~~ 72 (111)
T PF14319_consen 37 ALGFHRYRCEDCGHEKIVYNSC-------KNRHCPSCQAKATE 72 (111)
T ss_pred cCCcceeecCCCCceEEecCcc-------cCcCCCCCCChHHH
Confidence 446677888888753 45555 47899999999964
No 190
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.98 E-value=44 Score=43.34 Aligned_cols=48 Identities=23% Similarity=0.619 Sum_probs=30.1
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCc-----chhhhHhH--HhhCCCCCCCcccccccc
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV-----CRPCYEYE--RKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPV-----CRpCYeyE--rkeG~q~CPqCkt~Ykr~ 72 (773)
..|.-||..+-. .-|.+|+-+. |..|=--- -..+...||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 478888886421 2688888664 77775311 112355799998876543
No 191
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.79 E-value=35 Score=26.34 Aligned_cols=11 Identities=45% Similarity=1.440 Sum_probs=9.5
Q ss_pred CCCCccccccc
Q 004118 61 SCPQCKTRYKK 71 (773)
Q Consensus 61 ~CPqCkt~Ykr 71 (773)
.||.|+|.|+-
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 59999999964
No 192
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=22.70 E-value=31 Score=32.76 Aligned_cols=28 Identities=21% Similarity=0.525 Sum_probs=17.4
Q ss_pred eecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 37 VAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
.-|+.|+ ++++..+-...||+|+.+--+
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~ 98 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIMLQ 98 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCcE
Confidence 4466665 344454445779999976533
No 193
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=22.28 E-value=1.1e+02 Score=24.96 Aligned_cols=45 Identities=31% Similarity=0.652 Sum_probs=28.4
Q ss_pred cccccCCCcccCCCCCceeecCCCCC---CcchhhhHhHHh-hCCCCCCCcc
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYERK-DGNQSCPQCK 66 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~F---PVCRpCYeyErk-eG~q~CPqCk 66 (773)
+|.||-+ +-+++..++.+| .|.- -|=+.|.+.=+. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899987 344445567778 4542 244567755444 4467899996
No 194
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=22.25 E-value=53 Score=28.62 Aligned_cols=30 Identities=20% Similarity=0.605 Sum_probs=21.4
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCc
Q 004118 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPV 46 (773)
.---+|.-||.+-.+. .|+ .+-|.||||.|
T Consensus 18 ~miYiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 18 TMIYICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred cEEEEecccccccccc-CCC-cEehhhcchHH
Confidence 3345899999886554 344 46799999976
No 195
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=21.77 E-value=20 Score=33.89 Aligned_cols=30 Identities=27% Similarity=0.598 Sum_probs=17.0
Q ss_pred eeecCCCCCCcchhhhHhHHhhCCCCCCCcccccccc
Q 004118 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 36 FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~ 72 (773)
-+-|+.|+. +|+..+..-.||+|+.+..+.
T Consensus 70 ~~~C~~Cg~-------~~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 70 RARCRDCGH-------EFEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEEETTTS--------EEECHHCCHH-SSSSSS-EEE
T ss_pred cEECCCCCC-------EEecCCCCCCCcCCcCCCcEE
Confidence 355777764 344444445699999986443
No 196
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=21.61 E-value=1e+02 Score=35.99 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=28.0
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCC-CCcEEEEecCCCchh
Q 004118 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPV-DKVSCYVSDDGAAML 397 (773)
Q Consensus 347 ~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~-~Kl~~YVsDDG~s~l 397 (773)
..|.+-|+|-+|| - |..+.+||-++|+.. |. ++..++||.||....
T Consensus 91 ~~~~~pVlV~AcN---R-p~yl~r~L~sLl~~r-p~~~~fpIiVSQDg~~~~ 137 (434)
T PF03071_consen 91 KEPVIPVLVFACN---R-PDYLRRTLDSLLKYR-PSAEKFPIIVSQDGDDEE 137 (434)
T ss_dssp ------EEEEESS-----TT-HHHHHHHHHHH--S-TTTS-EEEEE-TT-HH
T ss_pred CCCcceEEEEecC---C-cHHHHHHHHHHHHcC-CCCCCccEEEEecCCcHH
Confidence 4566777777886 4 478999999999988 65 688999999998764
No 197
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=21.49 E-value=39 Score=26.08 Aligned_cols=10 Identities=40% Similarity=1.550 Sum_probs=9.0
Q ss_pred CCCCcccccc
Q 004118 61 SCPQCKTRYK 70 (773)
Q Consensus 61 ~CPqCkt~Yk 70 (773)
.||+|++.|.
T Consensus 4 ~Cp~C~~~y~ 13 (36)
T PF13717_consen 4 TCPNCQAKYE 13 (36)
T ss_pred ECCCCCCEEe
Confidence 5999999995
No 198
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PRK05582 DNA topoisomerase I; Validated
Probab=20.97 E-value=61 Score=39.19 Aligned_cols=51 Identities=31% Similarity=0.654 Sum_probs=30.3
Q ss_pred CccccccCCCccc--CCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 17 GQVCQICGDNVGK--TVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 17 ~~~C~iCgd~Vg~--~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
...|..||..+-. ...| .|..|. +||-|+-.. ...++.++.||.|+.....
T Consensus 571 ~~~CP~Cg~~l~~~~~k~g-kf~~Cs--~~~~C~~~~-~~~~~~~~~CP~C~~~l~l 623 (650)
T PRK05582 571 GEDCPKCGSPMVIKMGRYG-KFIACS--NFPDCRNTK-PIVKEIGVKCPKCGGQIVE 623 (650)
T ss_pred CCCCCCCCCEeEEEecCCC-ceeecC--CccccccCC-CcccccCCCCCCCCCceEE
Confidence 3579999876542 2344 699996 344444221 1113446789999876543
No 200
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=20.64 E-value=61 Score=25.80 Aligned_cols=29 Identities=31% Similarity=0.889 Sum_probs=22.9
Q ss_pred cccccCCCcccCCCCCceeecCCC-CCCcchhhhHh
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEY 53 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC-~FPVCRpCYey 53 (773)
.|..|+..+ | ....|.+| .|-+|-.||.-
T Consensus 2 ~C~~C~~~~-----~-~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 2 TCNECKHHV-----E-TRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred cCCCCCCcC-----C-CceECCCCcchhhHHHHhCC
Confidence 588886622 3 88999999 89999999943
No 201
>PRK07726 DNA topoisomerase III; Provisional
Probab=20.51 E-value=67 Score=38.98 Aligned_cols=46 Identities=28% Similarity=0.574 Sum_probs=30.0
Q ss_pred CccccccCCCccc--CCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccc
Q 004118 17 GQVCQICGDNVGK--TVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT 67 (773)
Q Consensus 17 ~~~C~iCgd~Vg~--~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt 67 (773)
...|..||..+-. ...| -|..|.. |+.|+.+. ..++.++.||-|+.
T Consensus 610 ~~~CP~C~~~~~~~~~~~~-~f~~Cs~--~~~~~~~~--~~~~~~~~~~~~~~ 657 (658)
T PRK07726 610 GPKCPDCGKPMLKVKGKNG-KMLVCQD--RECGKRKN--VSKKTNARCPNCKK 657 (658)
T ss_pred cccccccCccceeecccCC-eeEecCC--Cccccccc--cccccCCCCCccCC
Confidence 4679999987542 2345 5899987 77665421 12344678999975
No 202
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=20.39 E-value=2.1e+02 Score=36.17 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhh
Q 004118 298 IALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLS 336 (773)
Q Consensus 298 ~~lWl~~~~~Eiwfa~~wlL~q~~kw~Pi~R~t~~drL~ 336 (773)
.|+|++++++ +..++.|++.-+.+|++-.|..-..||.
T Consensus 45 ~~~~~~~l~~-~~~~~~~~l~~~~rfr~P~~~ea~~Rle 82 (851)
T TIGR02302 45 FWLHIAGLVL-FAALALVALIPAIRFRWPSRDEALARLE 82 (851)
T ss_pred HHHHHHHHHH-HHHHHHHHHhhhhhcCCCCHHHHHHHHH
Confidence 5778776666 3333333344455555555554444443
No 203
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=20.32 E-value=2.1e+02 Score=36.26 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=59.0
Q ss_pred CcccchhhhHHHHH--hhccCCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcceEEEccCccccCCCCccc-chh
Q 004118 530 QHHKKAGAMNALVR--VSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQRFDGIDRNDR-YAN 605 (773)
Q Consensus 530 ~hh~KAGALNalLr--vSa~ltngpfIlnlDcDh~~nnp~~Lr~amcff-lDp~~g~~vafVQtPQrF~N~d~~Dr-y~n 605 (773)
.|.+|=+-.-.++- ...++..-.||+.+|+|-. .+|++|.+++--| .||+.|--.| |. .|.-..-. +-+
T Consensus 418 ~~~krw~~~r~~~y~~~~~L~~~v~~il~vD~dT~-~~P~ai~~lv~~f~~dp~VggaCG--~I----~~~~~~w~v~~Q 490 (862)
T KOG2571|consen 418 RHKKRWNQHRWVMYTAFKALMPSVDYILVVDADTR-LDPDALYHLVKVFDEDPQVGGACG--RI----LNKGGSWVVAYQ 490 (862)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCcceEEEEecCCCc-cCcHHHHHHHHHhccCcccceecc--cc----ccCCCceEEeHH
Confidence 45555444333221 2234566679999999997 7999999999988 5996543333 22 22111111 111
Q ss_pred hHHHH-HHHHhhhccCCCccccccch--hhhhHhhhcC
Q 004118 606 RNTVF-FDINLRGLDGIQGPVYVGTG--CVFNRTALYG 640 (773)
Q Consensus 606 ~~~vF-fdvi~~GlDG~qgp~y~GTg--cv~RR~ALyG 640 (773)
.-+.. -+..+++-+..=|-+.|=.| +++|-+||-+
T Consensus 491 ~FEY~Ish~l~Ka~ESvFG~VsclPGcfs~yR~~aL~~ 528 (862)
T KOG2571|consen 491 NFEYAISHNLQKATESVFGCVSCLPGCFSLYRASALMD 528 (862)
T ss_pred HHHHHHHHHHHHhhhhhceeEEecCchhHHHHHHHHhc
Confidence 11111 12445666666565555555 4699989844
No 204
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=20.01 E-value=42 Score=31.09 Aligned_cols=40 Identities=25% Similarity=0.593 Sum_probs=24.2
Q ss_pred ccccCCCcccC-CCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccc
Q 004118 20 CQICGDNVGKT-VDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (773)
Q Consensus 20 C~iCgd~Vg~~-~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Y 69 (773)
|.+||...+.. ..-+.|.-+ ...+-|-.|++ .||+|+..|
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~-G~~~~v~~~~~---------~C~~CGe~~ 41 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYK-GESITIGVPGW---------YCPACGEEL 41 (127)
T ss_pred CCCCCCccceeeeecceEEEc-CEEEEEeeeee---------ECCCCCCEE
Confidence 88999654433 333344444 34444444444 699999887
Done!