Query 004118
Match_columns 773
No_of_seqs 372 out of 1113
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 14:51:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1weo_A Cellulose synthase, cat 100.0 1.4E-45 4.9E-50 324.2 9.1 90 3-93 2-91 (93)
2 4hg6_A Cellulose synthase subu 99.9 6.8E-27 2.3E-31 272.1 22.6 257 271-644 65-338 (802)
3 2z86_A Chondroitin synthase; G 99.2 8.1E-11 2.8E-15 131.5 14.0 129 345-598 89-218 (625)
4 3bcv_A Putative glycosyltransf 99.1 3.8E-10 1.3E-14 109.1 10.8 110 347-579 3-112 (240)
5 1qg8_A Protein (spore coat pol 99.1 2.1E-10 7.2E-15 112.2 7.7 162 349-639 1-169 (255)
6 1xhb_A Polypeptide N-acetylgal 99.0 2.2E-09 7.4E-14 116.2 12.5 116 345-579 25-143 (472)
7 2ffu_A Ppgalnact-2, polypeptid 99.0 1.7E-09 5.9E-14 118.5 10.9 113 345-579 62-174 (501)
8 2d7i_A Polypeptide N-acetylgal 98.9 6.4E-10 2.2E-14 124.9 6.8 114 346-578 109-223 (570)
9 2z86_A Chondroitin synthase; G 98.8 9.6E-09 3.3E-13 114.8 8.8 166 346-643 372-541 (625)
10 3ckj_A Putative uncharacterize 98.7 5.6E-08 1.9E-12 101.3 11.7 49 347-400 46-94 (329)
11 3l7i_A Teichoic acid biosynthe 98.4 2.2E-08 7.6E-13 115.0 0.0 111 348-579 1-111 (729)
12 3f1y_A Mannosyl-3-phosphoglyce 98.1 1.1E-05 3.7E-10 87.4 11.6 50 533-590 166-216 (387)
13 4fix_A UDP-galactofuranosyl tr 98.0 6.3E-06 2.2E-10 94.9 8.0 47 346-396 177-224 (657)
14 1e4u_A Transcriptional repress 96.5 0.0035 1.2E-07 53.8 5.9 53 16-71 10-62 (78)
15 1fo8_A Alpha-1,3-mannosyl-glyc 96.3 0.0034 1.2E-07 67.5 5.8 44 348-396 1-44 (343)
16 2nxv_A ATP synthase subunits r 96.1 0.014 4.8E-07 58.3 8.7 45 535-588 63-112 (249)
17 2bo4_A Mannosylglycerate synth 95.7 0.086 2.9E-06 57.6 13.2 46 532-577 74-119 (397)
18 2zu9_A Mannosyl-3-phosphoglyce 93.5 0.39 1.3E-05 52.8 11.4 38 533-573 144-181 (394)
19 2fy7_A Beta-1,4-galactosyltran 93.0 0.12 4.1E-06 53.8 6.1 39 348-392 64-105 (287)
20 1vyx_A ORF K3, K3RING; zinc-bi 89.1 0.35 1.2E-05 39.5 4.0 51 15-70 4-58 (60)
21 2wvl_A Mannosyl-3-phosphoglyce 88.5 1.4 4.9E-05 48.3 9.3 42 348-398 52-93 (391)
22 2ea6_A Ring finger protein 4; 88.3 0.54 1.9E-05 37.4 4.6 55 15-71 13-68 (69)
23 3ng2_A RNF4, snurf, ring finge 87.4 0.27 9.4E-06 39.6 2.4 56 13-70 6-62 (71)
24 2d8s_A Cellular modulator of i 87.3 0.72 2.5E-05 39.6 5.1 57 12-71 10-70 (80)
25 1t1h_A Gspef-atpub14, armadill 86.3 0.5 1.7E-05 39.0 3.4 48 16-70 7-54 (78)
26 1g25_A CDK-activating kinase a 86.3 0.61 2.1E-05 37.3 3.9 53 17-71 3-55 (65)
27 2ckl_B Ubiquitin ligase protei 85.9 0.54 1.8E-05 44.5 3.9 47 19-71 56-102 (165)
28 2kiz_A E3 ubiquitin-protein li 85.5 1.4 4.8E-05 35.4 5.7 53 15-72 12-64 (69)
29 2xeu_A Ring finger protein 4; 84.8 0.35 1.2E-05 37.9 1.7 53 17-71 3-56 (64)
30 2ect_A Ring finger protein 126 84.1 2.6 9E-05 34.5 6.8 53 15-72 13-65 (78)
31 2ysl_A Tripartite motif-contai 83.8 0.84 2.9E-05 36.9 3.6 49 16-71 19-69 (73)
32 1iym_A EL5; ring-H2 finger, ub 83.7 1.4 4.7E-05 33.8 4.6 50 16-69 4-53 (55)
33 2ecm_A Ring finger and CHY zin 83.2 1.3 4.4E-05 33.9 4.3 50 16-69 4-53 (55)
34 3fl2_A E3 ubiquitin-protein li 82.7 0.93 3.2E-05 40.8 3.8 47 18-71 53-99 (124)
35 2ecy_A TNF receptor-associated 82.2 0.92 3.1E-05 36.3 3.2 49 16-71 14-62 (66)
36 1v87_A Deltex protein 2; ring- 81.8 1.4 4.9E-05 38.8 4.6 60 16-75 24-98 (114)
37 2ecv_A Tripartite motif-contai 80.6 2.9 9.8E-05 34.3 5.8 49 16-71 18-71 (85)
38 2ecw_A Tripartite motif-contai 79.7 3.5 0.00012 33.7 6.0 49 16-71 18-71 (85)
39 2ct2_A Tripartite motif protei 79.1 2.2 7.4E-05 35.6 4.6 53 16-71 14-68 (88)
40 3hct_A TNF receptor-associated 77.9 2.1 7.2E-05 38.3 4.4 46 18-70 19-64 (118)
41 2c2l_A CHIP, carboxy terminus 77.5 2.3 8E-05 42.3 5.1 49 15-70 206-254 (281)
42 2f42_A STIP1 homology and U-bo 77.2 1.6 5.4E-05 43.1 3.7 48 16-70 105-152 (179)
43 2zet_C Melanophilin; complex, 76.8 0.54 1.8E-05 45.5 0.2 52 15-68 66-117 (153)
44 3lrq_A E3 ubiquitin-protein li 76.8 2.1 7.2E-05 37.4 4.0 48 17-70 22-69 (100)
45 3l11_A E3 ubiquitin-protein li 75.2 1.2 4.1E-05 39.5 2.0 48 17-71 15-62 (115)
46 1chc_A Equine herpes virus-1 r 71.9 4.4 0.00015 32.2 4.5 50 16-72 4-53 (68)
47 2y43_A E3 ubiquitin-protein li 71.7 3.4 0.00012 35.6 4.1 48 17-71 22-69 (99)
48 2ep4_A Ring finger protein 24; 70.3 6.4 0.00022 31.9 5.2 52 15-71 13-64 (74)
49 2djb_A Polycomb group ring fin 69.7 11 0.00037 30.6 6.4 48 17-71 15-62 (72)
50 1x4j_A Ring finger protein 38; 68.6 2.6 8.9E-05 34.5 2.5 53 15-72 21-73 (75)
51 1z6u_A NP95-like ring finger p 68.1 3.8 0.00013 38.7 3.8 46 18-70 79-124 (150)
52 3hcs_A TNF receptor-associated 68.0 3.9 0.00013 38.6 3.9 47 18-71 19-65 (170)
53 2ysj_A Tripartite motif-contai 67.9 9.6 0.00033 29.9 5.6 43 16-65 19-63 (63)
54 3ztg_A E3 ubiquitin-protein li 66.7 6 0.00021 33.4 4.5 49 16-70 12-61 (92)
55 2kre_A Ubiquitin conjugation f 66.6 3.6 0.00012 36.5 3.1 47 16-70 28-74 (100)
56 2l0b_A E3 ubiquitin-protein li 66.6 3.6 0.00012 35.2 3.1 49 17-70 40-88 (91)
57 2kr4_A Ubiquitin conjugation f 66.4 3.7 0.00013 35.1 3.1 47 16-70 13-59 (85)
58 2ecl_A Ring-box protein 2; RNF 66.4 5.5 0.00019 33.5 4.1 56 15-71 13-76 (81)
59 1jm7_A BRCA1, breast cancer ty 65.4 5.1 0.00018 34.8 3.9 46 18-70 22-69 (112)
60 2csy_A Zinc finger protein 183 65.3 9.7 0.00033 31.5 5.4 47 16-70 14-60 (81)
61 2ckl_A Polycomb group ring fin 64.2 5.1 0.00018 35.1 3.7 48 17-71 15-62 (108)
62 4ayc_A E3 ubiquitin-protein li 63.7 4.9 0.00017 37.0 3.5 44 19-70 55-98 (138)
63 3vk6_A E3 ubiquitin-protein li 63.4 4.2 0.00014 37.1 2.9 48 19-72 3-50 (101)
64 1jm7_B BARD1, BRCA1-associated 63.2 5 0.00017 35.8 3.4 45 17-70 22-66 (117)
65 1rmd_A RAG1; V(D)J recombinati 63.2 6.1 0.00021 34.9 4.0 48 17-71 23-70 (116)
66 2yur_A Retinoblastoma-binding 62.4 7.4 0.00025 31.9 4.1 50 16-71 14-64 (74)
67 1zbd_B Rabphilin-3A; G protein 61.6 4.6 0.00016 38.1 3.0 38 14-54 52-90 (134)
68 4ap4_A E3 ubiquitin ligase RNF 60.1 3.7 0.00013 36.3 1.9 56 14-71 69-125 (133)
69 2egp_A Tripartite motif-contai 59.7 2.9 9.9E-05 34.1 1.1 48 17-71 12-65 (79)
70 1wgm_A Ubiquitin conjugation f 59.1 6.5 0.00022 34.7 3.3 46 17-70 22-68 (98)
71 2jny_A Uncharacterized BCR; st 58.8 1.5 5.2E-05 37.1 -0.7 38 45-82 14-51 (67)
72 3ky9_A Proto-oncogene VAV; cal 57.6 5.4 0.00018 45.1 3.2 38 13-53 525-563 (587)
73 2d8t_A Dactylidin, ring finger 57.3 9.2 0.00032 30.9 3.8 50 14-71 12-61 (71)
74 2ecn_A Ring finger protein 141 56.8 8.6 0.00029 30.7 3.5 48 16-72 14-61 (70)
75 3h0g_L DNA-directed RNA polyme 54.4 6.9 0.00024 32.9 2.5 30 15-46 19-48 (63)
76 3dpl_R Ring-box protein 1; ubi 54.2 12 0.00039 33.7 4.2 55 15-70 35-100 (106)
77 1bor_A Transcription factor PM 53.9 13 0.00045 29.0 4.0 45 17-72 6-50 (56)
78 2csz_A Synaptotagmin-like prot 52.9 10 0.00034 33.0 3.4 41 14-56 22-62 (76)
79 2ea5_A Cell growth regulator w 52.1 9.9 0.00034 31.2 3.2 46 14-71 12-58 (68)
80 3nw0_A Non-structural maintena 51.2 11 0.00037 38.5 3.9 48 17-70 180-228 (238)
81 2k16_A Transcription initiatio 50.6 6.6 0.00023 32.8 1.9 53 16-72 17-72 (75)
82 2vrw_B P95VAV, VAV1, proto-onc 50.6 8.2 0.00028 41.2 3.0 38 12-52 352-390 (406)
83 4ap4_A E3 ubiquitin ligase RNF 49.5 6.5 0.00022 34.7 1.8 54 16-71 6-60 (133)
84 2y1n_A E3 ubiquitin-protein li 49.5 11 0.00037 41.5 3.8 47 18-71 333-379 (389)
85 2dj7_A Actin-binding LIM prote 48.3 9.6 0.00033 32.0 2.5 53 9-64 7-67 (80)
86 2vje_A E3 ubiquitin-protein li 48.3 8.5 0.00029 31.1 2.1 53 12-70 3-56 (64)
87 2js4_A UPF0434 protein BB2007; 46.4 2.2 7.4E-05 36.4 -1.8 41 36-81 8-48 (70)
88 2ecg_A Baculoviral IAP repeat- 45.8 12 0.00042 30.7 2.8 43 17-71 25-68 (75)
89 3knv_A TNF receptor-associated 45.3 7.6 0.00026 36.3 1.6 46 17-69 31-76 (141)
90 3vth_A Hydrogenase maturation 43.5 9.6 0.00033 45.1 2.4 58 14-71 108-195 (761)
91 3v43_A Histone acetyltransfera 43.0 23 0.00077 31.9 4.3 52 17-68 5-64 (112)
92 2ecj_A Tripartite motif-contai 42.5 40 0.0014 25.5 5.1 43 16-65 14-58 (58)
93 2ku3_A Bromodomain-containing 41.8 10 0.00036 32.0 1.7 53 14-68 13-66 (71)
94 1xwh_A Autoimmune regulator; P 41.4 12 0.00042 30.7 2.1 49 13-68 4-55 (66)
95 2l5u_A Chromodomain-helicase-D 41.2 19 0.00067 29.2 3.2 49 12-67 6-57 (61)
96 1m3v_A FLIN4, fusion of the LI 39.9 22 0.00074 32.0 3.6 53 16-70 4-80 (122)
97 2co8_A NEDD9 interacting prote 39.7 24 0.00082 29.5 3.7 64 10-76 8-79 (82)
98 1tot_A CREB-binding protein; z 39.5 11 0.00038 30.1 1.5 32 17-54 6-38 (52)
99 2d8y_A Eplin protein; LIM doma 39.2 52 0.0018 27.8 5.8 37 9-45 7-51 (91)
100 1wew_A DNA-binding family prot 38.2 21 0.00071 30.3 3.1 56 10-70 9-74 (78)
101 2xjy_A Rhombotin-2; oncoprotei 38.0 18 0.00061 32.5 2.8 24 44-69 52-76 (131)
102 3a43_A HYPD, hydrogenase nicke 36.3 6.9 0.00024 36.9 -0.2 13 59-71 107-119 (139)
103 1wev_A Riken cDNA 1110020M19; 36.2 11 0.00036 33.0 1.0 56 14-71 13-75 (88)
104 1wim_A KIAA0161 protein; ring 35.3 22 0.00076 30.3 2.8 49 17-69 5-62 (94)
105 4ic3_A E3 ubiquitin-protein li 34.3 21 0.0007 29.4 2.4 42 18-71 25-67 (74)
106 1we9_A PHD finger family prote 33.7 19 0.00066 29.0 2.1 54 16-72 5-62 (64)
107 1twf_L ABC10-alpha, DNA-direct 33.4 17 0.00059 30.9 1.8 24 19-44 30-53 (70)
108 2cor_A Pinch protein; LIM doma 33.3 31 0.0011 28.6 3.4 38 12-49 10-54 (79)
109 3t7l_A Zinc finger FYVE domain 32.7 43 0.0015 29.1 4.3 56 12-70 15-75 (90)
110 3t6p_A Baculoviral IAP repeat- 32.7 18 0.00063 38.8 2.3 43 17-71 295-338 (345)
111 2l43_A N-teminal domain from h 32.6 22 0.00074 31.1 2.3 53 15-69 23-76 (88)
112 2gai_A DNA topoisomerase I; zi 32.6 9.2 0.00031 44.3 -0.1 45 19-68 574-621 (633)
113 4g9i_A Hydrogenase maturation 32.6 16 0.00056 43.2 2.0 59 14-72 103-191 (772)
114 2ct0_A Non-SMC element 1 homol 32.2 53 0.0018 27.9 4.6 50 15-70 13-63 (74)
115 2cup_A Skeletal muscle LIM-pro 32.2 24 0.00082 30.1 2.6 52 15-69 3-76 (101)
116 1m4f_A Hepcidin; strand-loop-s 31.9 4 0.00014 28.9 -1.9 23 43-67 3-25 (26)
117 1mm2_A MI2-beta; PHD, zinc fin 31.7 26 0.0009 28.4 2.5 47 15-68 7-56 (61)
118 2vje_B MDM4 protein; proto-onc 30.6 25 0.00084 28.2 2.2 48 16-71 6-56 (63)
119 2yu4_A E3 SUMO-protein ligase 30.5 36 0.0012 29.3 3.4 46 17-68 7-59 (94)
120 1rut_X Flinc4, fusion protein 30.4 38 0.0013 32.6 3.9 53 15-69 3-79 (188)
121 3lqh_A Histone-lysine N-methyl 30.3 28 0.00094 34.4 2.9 54 16-69 1-64 (183)
122 1f62_A Transcription factor WS 29.8 30 0.001 26.6 2.5 45 19-67 2-49 (51)
123 3htk_C E3 SUMO-protein ligase 29.7 25 0.00087 36.9 2.7 50 15-70 179-231 (267)
124 2lri_C Autoimmune regulator; Z 29.2 36 0.0012 28.2 3.0 45 16-67 11-58 (66)
125 4a0k_B E3 ubiquitin-protein li 28.6 14 0.00047 34.0 0.4 53 17-70 48-111 (117)
126 2hf1_A Tetraacyldisaccharide-1 28.3 5.7 0.00019 33.6 -2.0 41 36-81 8-48 (68)
127 1x61_A Thyroid receptor intera 27.9 54 0.0018 26.2 3.8 28 16-43 4-40 (72)
128 3q80_A 2-C-methyl-D-erythritol 27.7 64 0.0022 32.1 5.1 28 551-578 100-127 (231)
129 2xqn_T Testin, TESS; metal-bin 27.4 47 0.0016 29.5 3.7 24 43-69 50-73 (126)
130 2yho_A E3 ubiquitin-protein li 26.0 42 0.0014 28.2 2.9 43 17-71 18-61 (79)
131 2gmg_A Hypothetical protein PF 25.9 21 0.00072 32.8 1.1 26 37-68 68-93 (105)
132 2puy_A PHD finger protein 21A; 25.6 20 0.00067 28.8 0.8 50 15-71 3-55 (60)
133 1dl6_A Transcription factor II 25.3 47 0.0016 26.9 3.0 14 56-69 27-40 (58)
134 1x63_A Skeletal muscle LIM-pro 24.4 36 0.0012 28.0 2.2 30 15-44 13-51 (82)
135 2jr6_A UPF0434 protein NMA0874 23.8 10 0.00034 32.1 -1.3 31 51-81 18-48 (68)
136 2kdx_A HYPA, hydrogenase/ureas 23.5 14 0.00049 33.5 -0.5 31 35-72 72-103 (119)
137 2ksl_A U1-agatoxin-TA1A; insec 23.4 2.4 8.4E-05 33.2 -4.7 25 17-41 20-48 (51)
138 1wge_A Hypothetical protein 26 23.3 28 0.00096 30.6 1.4 27 19-46 32-62 (83)
139 2c0n_A A197; thermophil protei 23.2 56 0.0019 33.1 3.6 80 548-644 51-134 (203)
140 1x4l_A Skeletal muscle LIM-pro 23.2 68 0.0023 25.6 3.6 14 16-29 4-17 (72)
141 2e72_A POGO transposable eleme 23.1 26 0.00088 28.2 1.0 15 58-72 11-25 (49)
142 2kwj_A Zinc finger protein DPF 22.3 65 0.0022 29.0 3.6 49 18-66 2-59 (114)
143 1wen_A Inhibitor of growth fam 22.2 1E+02 0.0035 25.8 4.6 60 9-74 8-71 (71)
144 2ysm_A Myeloid/lymphoid or mix 22.1 51 0.0018 29.2 2.9 50 14-67 4-56 (111)
145 1wee_A PHD finger family prote 21.9 41 0.0014 27.9 2.1 51 16-70 15-68 (72)
146 2jr7_A DPH3 homolog; DESR1, CS 21.7 22 0.00075 31.7 0.3 27 19-46 25-55 (89)
147 2rgt_A Fusion of LIM/homeobox 21.3 76 0.0026 29.9 4.0 50 17-69 6-75 (169)
148 1wem_A Death associated transc 21.3 67 0.0023 26.8 3.3 52 14-70 13-72 (76)
149 3ttc_A HYPF, transcriptional r 21.2 25 0.00087 41.0 0.8 57 14-70 14-100 (657)
150 1g47_A Pinch protein; LIM doma 21.1 38 0.0013 27.4 1.7 32 14-45 8-48 (77)
151 3u5n_A E3 ubiquitin-protein li 20.7 38 0.0013 33.3 1.9 47 16-69 6-55 (207)
152 1yop_A KTI11P; zinc finger, me 20.6 25 0.00085 30.9 0.4 27 19-46 25-55 (83)
153 2egq_A FHL1 protein; LIM domai 20.2 52 0.0018 26.6 2.3 14 15-28 13-26 (77)
154 1lko_A Rubrerythrin all-iron(I 20.0 18 0.00061 35.6 -0.7 27 36-69 155-181 (191)
155 3v43_A Histone acetyltransfera 20.0 53 0.0018 29.4 2.5 46 19-67 63-111 (112)
No 1
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=100.00 E-value=1.4e-45 Score=324.18 Aligned_cols=90 Identities=60% Similarity=1.279 Sum_probs=85.3
Q ss_pred CCCCCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccccCCCCcccCCC
Q 004118 3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDR 82 (773)
Q Consensus 3 ~~~~~~~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~kGs~rv~gd~ 82 (773)
+.|.+++|||+++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||
T Consensus 2 ~~g~~~~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GD- 80 (93)
T 1weo_A 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGD- 80 (93)
T ss_dssp CCSSSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTS-
T ss_pred CCCCCCCCcccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCcccc-
Confidence 4567779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCC
Q 004118 83 EEDGDADDGAS 93 (773)
Q Consensus 83 e~e~~~dd~~~ 93 (773)
|+|+++||+++
T Consensus 81 e~e~d~dD~~~ 91 (93)
T 1weo_A 81 EDEEDIDSGPS 91 (93)
T ss_dssp CCCCCSCCCCS
T ss_pred ccccccccccc
Confidence 67788899874
No 2
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=99.95 E-value=6.8e-27 Score=272.10 Aligned_cols=257 Identities=24% Similarity=0.405 Sum_probs=204.0
Q ss_pred hHHH-HHHHHHHHHHHHHHHhcccccc-----hHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhhhhhhcCCC
Q 004118 271 YRMV-IFLRLIILGIFLYYRIKNPVHN-----AIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGE 344 (773)
Q Consensus 271 yR~~-i~~~lv~l~~yl~wRi~~~~~~-----a~~lWl~~~~~Eiwfa~~wlL~q~~kw~Pi~R~t~~drL~~r~e~~~~ 344 (773)
.|++ +++.++++++|++||++.+++. ++++|++++++|+++.+.|++..+..|.|+.|...++. .
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~---------~ 135 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL---------Q 135 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC---------C
T ss_pred hHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC---------C
Confidence 4544 5556778889999999987663 35678889999999999999999999999988765431 2
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCC
Q 004118 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (773)
Q Consensus 345 ~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepR 424 (773)
++++|.|+|+||||| |++.++.+|+.|+++.+||.+++.|+|+|||+++-|.+.
T Consensus 136 ~~~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~----------------------- 189 (802)
T 4hg6_A 136 PEELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS----------------------- 189 (802)
T ss_dssp TTTCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC-----------------------
T ss_pred ccCCCcEEEEEEECC---CCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc-----------------------
Confidence 457999999999998 999999999999999999999999999999999855431
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccC
Q 004118 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (773)
Q Consensus 425 aPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~ 504 (773)
..|+.+++. .+-...++.+.++.
T Consensus 190 ----------------~d~~i~~~~-------~~~~~~l~~~~~~~---------------------------------- 212 (802)
T 4hg6_A 190 ----------------PDPELAQKA-------QERRRELQQLCREL---------------------------------- 212 (802)
T ss_dssp ----------------SSHHHHHHH-------HHHHHHHHHHHHHH----------------------------------
T ss_pred ----------------CCHHHHHHH-------HhhhHHHHHHHHhc----------------------------------
Confidence 011221111 11111222232110
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCc
Q 004118 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGK 583 (773)
Q Consensus 505 ~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcff-lDp~~g~ 583 (773)
+ +.|+.|++ +++.||||+|.+++. ++++||+++|||.+ +.|++|++++.+| .||
T Consensus 213 -~-----------v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~~-~~pd~L~~lv~~~~~dp---- 267 (802)
T 4hg6_A 213 -G-----------VVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADHV-PSRDFLARTVGYFVEDP---- 267 (802)
T ss_dssp -T-----------CEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTEE-ECTTHHHHHHHHHHHSS----
T ss_pred -C-----------cEEEEecC----CCCcchHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHHhcCC----
Confidence 1 77888885 567999999999996 68999999999997 5799999999999 588
Q ss_pred ceEEEccCccccCCCCc-------ccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhc---CCCCC
Q 004118 584 HVCYVQFPQRFDGIDRN-------DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY---GYEPP 644 (773)
Q Consensus 584 ~vafVQtPQrF~N~d~~-------Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALy---G~~Pp 644 (773)
++++||+|+.|.|.++. .++.+++..||...+.+.+.+++++++|+++++||++|. |+++.
T Consensus 268 ~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~vGgf~~~ 338 (802)
T 4hg6_A 268 DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDEAGGFAGE 338 (802)
T ss_dssp SCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHHHTTCCCS
T ss_pred CeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHHHcCCcCCC
Confidence 79999999999998742 445677899999999999999999999999999999994 56543
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.20 E-value=8.1e-11 Score=131.49 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=98.8
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCC
Q 004118 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (773)
Q Consensus 345 ~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepR 424 (773)
+..+|.|+|+|||+| |+ ..+..||.|+++.+||. .+.|+|+|||.++-|.+.+.+
T Consensus 89 ~~~~p~vsviIp~~n---~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~~-------------------- 143 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN---RA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVRE-------------------- 143 (625)
T ss_dssp -CCCCCEEEEEEESS---CH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHHT--------------------
T ss_pred cccCCcEEEEEecCC---cH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHHHH--------------------
Confidence 346899999999998 74 78899999999999986 799999999998732221110
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccC
Q 004118 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (773)
Q Consensus 425 aPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~ 504 (773)
+.
T Consensus 144 -----------------------------------------~~------------------------------------- 145 (625)
T 2z86_A 144 -----------------------------------------FE------------------------------------- 145 (625)
T ss_dssp -----------------------------------------TT-------------------------------------
T ss_pred -----------------------------------------hh-------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCc
Q 004118 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGK 583 (773)
Q Consensus 505 ~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcffl-Dp~~g~ 583 (773)
..+.+.|+.+++ ..+.||+|+|.+++. +.++||+++|+|++ +.|++|.+++.+|. +|
T Consensus 146 ---------~~~~i~~i~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~~-~~~~~l~~~~~~~~~~~---- 203 (625)
T 2z86_A 146 ---------SLLNIKYVRQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDMA-PNPLWVQSYMELLAVDD---- 203 (625)
T ss_dssp ---------TTSCEEEEEECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTEE-ECTTHHHHHHHHHHHCT----
T ss_pred ---------hcCCeEEEEeCC----CCcchhHHHHHHHHh----CCcCEEEEECCCCC-CCHHHHHHHHHHHhcCC----
Confidence 002277777653 234699999999996 68999999999998 58999999999886 56
Q ss_pred ceEEEccCccccCCC
Q 004118 584 HVCYVQFPQRFDGID 598 (773)
Q Consensus 584 ~vafVQtPQrF~N~d 598 (773)
.+++|+..+.+.+..
T Consensus 204 ~~~~~g~~~~~~~~~ 218 (625)
T 2z86_A 204 NVALIGPRKYIDTSK 218 (625)
T ss_dssp TEEEECCEEEECCTT
T ss_pred ceEEEEeeeeccCcc
Confidence 688888877665543
No 4
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.08 E-value=3.8e-10 Score=109.11 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=85.2
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCc
Q 004118 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (773)
Q Consensus 347 ~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaP 426 (773)
..|.|.|+||||| ++ ..+..+|.|+++..|| .+.|+|.|||.++-|.+.+.+
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~---------------------- 54 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDD---------------------- 54 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHH----------------------
T ss_pred CCCcEEEEEecCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCHHHHHHH----------------------
Confidence 4789999999998 55 5788999999999998 689999999999854432211
Q ss_pred hhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCC
Q 004118 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (773)
Q Consensus 427 e~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g 506 (773)
+.++
T Consensus 55 ---------------------------------------~~~~------------------------------------- 58 (240)
T 3bcv_A 55 ---------------------------------------YAAQ------------------------------------- 58 (240)
T ss_dssp ---------------------------------------HHHH-------------------------------------
T ss_pred ---------------------------------------HHhh-------------------------------------
Confidence 0000
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 004118 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (773)
Q Consensus 507 ~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp 579 (773)
.|++.|+..+ ...+++|.|.+++. +.|+||+.+|+|.+ ..|++|.+.+..|.++
T Consensus 59 --------~~~i~~i~~~------n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~-~~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 59 --------YPNIKVIHKK------NAGLGMACNSGLDV----ATGEYVAFCDSDDY-VDSDMYMTMYNVAQKY 112 (240)
T ss_dssp --------CSSEEEEECC------CCCHHHHHHHHHHH----CCSSEEEECCTTCC-CCTTHHHHHHHHHHHH
T ss_pred --------CCCEEEEECC------CCChHHHHHHHHHH----cCCCEEEEECCCCc-CCHHHHHHHHHHHHhc
Confidence 1236666432 23589999999996 68999999999997 5789999999998753
No 5
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.05 E-value=2.1e-10 Score=112.19 Aligned_cols=162 Identities=11% Similarity=0.152 Sum_probs=109.0
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCchh
Q 004118 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (773)
Q Consensus 349 P~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe~ 428 (773)
|.|.|+|||+| ++ ..+..||.|+++..|| .+.|+|.|||.++-|.+.+.+
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~------------------------ 50 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRP------------------------ 50 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGG------------------------
T ss_pred CeEEEEEEcCC---CH-HHHHHHHHHHHhccCC--ceEEEEEECCCCchHHHHHHH------------------------
Confidence 67999999998 55 6888999999999998 689999999998744332211
Q ss_pred hhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCCC
Q 004118 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (773)
Q Consensus 429 YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g~~ 508 (773)
+..
T Consensus 51 -------------------------------------~~~---------------------------------------- 53 (255)
T 1qg8_A 51 -------------------------------------FLN---------------------------------------- 53 (255)
T ss_dssp -------------------------------------GGG----------------------------------------
T ss_pred -------------------------------------Hhh----------------------------------------
Confidence 000
Q ss_pred CCCCCCCCcEEEEeccCCCC----CCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCc
Q 004118 509 DAEGNELPRLVYVSREKRPG----FQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGK 583 (773)
Q Consensus 509 d~~g~~lP~lvYvSReKrpg----~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcffl-Dp~~g~ 583 (773)
-|++.|+..+.. + .....+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+++-+|. +|
T Consensus 54 ------~~~i~~i~~~~~-~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~-~~~~~l~~~~~~~~~~~---- 117 (255)
T 1qg8_A 54 ------DNRVRFYQSDIS-GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNI-YMPDRLLKMVRELDTHP---- 117 (255)
T ss_dssp ------STTEEEEECCCC-SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEE-ECTTHHHHHHHHHHHCT----
T ss_pred ------cCCEEEEecccc-cccccccccCHHHHHHHHHHH----cCCCEEEEeCCCCc-cChHHHHHHHHHHHhCC----
Confidence 023666666510 0 0123599999999996 69999999999998 47899999999885 56
Q ss_pred ceEEEccCcccc--CCCCcccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhc
Q 004118 584 HVCYVQFPQRFD--GIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (773)
Q Consensus 584 ~vafVQtPQrF~--N~d~~Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALy 639 (773)
++++|.+...+. +.+.. ....... ..............|++.++||++|.
T Consensus 118 ~~~~v~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~rr~~~~ 169 (255)
T 1qg8_A 118 EKAVIYSASKTYHLNENRD-IVKETVR-----PAAQVTWNAPCAIDHCSVMHRYSVLE 169 (255)
T ss_dssp TCCEEEEEEEEEEEC---C-EEEEEEE-----CCCSCBSCCTTTSCGGGEEEETHHHH
T ss_pred CceEEEeceEEEEeCCCCc-chhhccC-----chHHHHHhhcCCCccceEEEEHHHHH
Confidence 677888776655 33221 1100000 00011113345568899999999983
No 6
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=98.97 E-value=2.2e-09 Score=116.23 Aligned_cols=116 Identities=18% Similarity=0.130 Sum_probs=91.1
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh-hHHHHHhhHHHhhhhHhHHHhhCCCC
Q 004118 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML-TFEALSETSEFARKWVPFCKKYNIEP 423 (773)
Q Consensus 345 ~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~l-t~~aL~Eaa~FA~~WVPFCrK~~Iep 423 (773)
+..+|.|.|+|||+| |+...+..||.|+++..||...+.|+|.|||.++- |.+.|.+
T Consensus 25 ~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~------------------- 82 (472)
T 1xhb_A 25 PDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLES------------------- 82 (472)
T ss_dssp CSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHH-------------------
T ss_pred CcCCCCeEEEEEeCC---CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHH-------------------
Confidence 357999999999998 88788999999999999996667999999999862 3332211
Q ss_pred CCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeecc
Q 004118 424 RAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLG 503 (773)
Q Consensus 424 RaPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~ 503 (773)
+.+
T Consensus 83 ------------------------------------------~~~----------------------------------- 85 (472)
T 1xhb_A 83 ------------------------------------------YVK----------------------------------- 85 (472)
T ss_dssp ------------------------------------------HHH-----------------------------------
T ss_pred ------------------------------------------HHH-----------------------------------
Confidence 110
Q ss_pred CCCCCCCCCCCCC-cEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhc-CC
Q 004118 504 ENGGLDAEGNELP-RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DP 579 (773)
Q Consensus 504 ~~g~~d~~g~~lP-~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcffl-Dp 579 (773)
.+| ++.+|..+++.| +++|+|.+++. +.|+||++||+|.+ .+|++|.+++-+|. ++
T Consensus 86 ----------~~~~~v~vi~~~~n~G-----~~~a~N~g~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~~ 143 (472)
T 1xhb_A 86 ----------KLKVPVHVIRMEQRSG-----LIRARLKGAAV----SRGQVITFLDAHCE-CTAGWLEPLLARIKHDR 143 (472)
T ss_dssp ----------SSSSCEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEEEESSEE-ECTTCHHHHHHHHHHCT
T ss_pred ----------HCCCcEEEEECCCCCC-----hHHHHHHHHHh----ccCCeEEEECCCeE-eCccHHHHHHHHHHhCC
Confidence 012 367777765443 99999999996 67999999999997 68899999999885 44
No 7
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=98.95 E-value=1.7e-09 Score=118.45 Aligned_cols=113 Identities=17% Similarity=0.102 Sum_probs=89.3
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCC
Q 004118 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (773)
Q Consensus 345 ~~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepR 424 (773)
+..+|.|.|+||||| |....+..||.|+++..||...+.|+|.|||.++-|...+
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------------------- 116 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------------------- 116 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG----------------------
T ss_pred CcCCCCEEEEEEeCc---CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHH----------------------
Confidence 357999999999999 8765899999999999998656799999999987332110
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccC
Q 004118 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (773)
Q Consensus 425 aPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~ 504 (773)
+.
T Consensus 117 -----------------------------------------~~------------------------------------- 118 (501)
T 2ffu_A 117 -----------------------------------------LG------------------------------------- 118 (501)
T ss_dssp -----------------------------------------GG-------------------------------------
T ss_pred -----------------------------------------Hh-------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 004118 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (773)
Q Consensus 505 ~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp 579 (773)
..|++.||..+++. .+++|+|.+++. +.|+||++||+|.+ ..|++|.+++-.|...
T Consensus 119 ---------~~~~v~vi~~~~n~-----G~~~A~N~G~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 119 ---------KIEKVRVLRNDRRE-----GLMRSRVRGADA----AQAKVLTFLDSHCE-CNEHWLEPLLERVAED 174 (501)
T ss_dssp ---------GBTTEEEEECSSCC-----HHHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCHHHHHHHHHHC
T ss_pred ---------cCCCEEEEECCCCc-----CHHHHHHHHHHh----cCCCEEEEECCCcc-cCccHHHHHHHHHHhC
Confidence 01347777766543 489999999996 68999999999997 5789999999988643
No 8
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=98.94 E-value=6.4e-10 Score=124.87 Aligned_cols=114 Identities=18% Similarity=0.101 Sum_probs=89.7
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh-HHHHHhhHHHhhhhHhHHHhhCCCCC
Q 004118 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT-FEALSETSEFARKWVPFCKKYNIEPR 424 (773)
Q Consensus 346 ~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt-~~aL~Eaa~FA~~WVPFCrK~~IepR 424 (773)
+.+|.|.|+||||| |+...+..||.|+++..||...+.|+|.|||.++-| .+.|.+
T Consensus 109 ~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~-------------------- 165 (570)
T 2d7i_A 109 ETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLED-------------------- 165 (570)
T ss_dssp SSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHH--------------------
T ss_pred CCCCCeEEEEEECC---CCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHH--------------------
Confidence 46899999999999 877899999999999999865569999999998844 221111
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccC
Q 004118 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (773)
Q Consensus 425 aPe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~ 504 (773)
+.+
T Consensus 166 -----------------------------------------~~~------------------------------------ 168 (570)
T 2d7i_A 166 -----------------------------------------YMA------------------------------------ 168 (570)
T ss_dssp -----------------------------------------HHT------------------------------------
T ss_pred -----------------------------------------HHH------------------------------------
Confidence 100
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcC
Q 004118 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (773)
Q Consensus 505 ~g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflD 578 (773)
..|++.+|..+++. .+++|+|.+++. +.|+||++||+|.++ ++++|.+++-+|.+
T Consensus 169 ---------~~~~v~vi~~~~n~-----G~~~A~N~G~~~----A~gd~i~fLD~D~~~-~p~~L~~ll~~l~~ 223 (570)
T 2d7i_A 169 ---------LFPSVRILRTKKRE-----GLIRTRMLGASV----ATGDVITFLDSHCEA-NVNWLPPLLDRIAR 223 (570)
T ss_dssp ---------TSTTEEEEECSSCC-----CHHHHHHHHHHH----CCSSEEEECCSSEEE-CTTCSHHHHHHHHH
T ss_pred ---------hCCeEEEEECCCCC-----CHHHHHHHHHHh----cCCCEEEEEcCCccc-cccHHHHHHHHHHh
Confidence 11347777766543 499999999996 689999999999984 89999999998864
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=98.77 E-value=9.6e-09 Score=114.83 Aligned_cols=166 Identities=20% Similarity=0.238 Sum_probs=113.7
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCC
Q 004118 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (773)
Q Consensus 346 ~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRa 425 (773)
...|.|.|+||||| ++ ..+..||.|+++..|| .+.|+|.|||.++-|.+.+.+
T Consensus 372 ~~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~~--------------------- 424 (625)
T 2z86_A 372 KRVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQE--------------------- 424 (625)
T ss_dssp CSSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHHH---------------------
T ss_pred ccCCeEEEEEeCCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECcCChhHHHHHHH---------------------
Confidence 45789999999998 54 6789999999999998 589999999999844432211
Q ss_pred chhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCC
Q 004118 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (773)
Q Consensus 426 Pe~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~ 505 (773)
+.+
T Consensus 425 ----------------------------------------~~~------------------------------------- 427 (625)
T 2z86_A 425 ----------------------------------------HYA------------------------------------- 427 (625)
T ss_dssp ----------------------------------------HHT-------------------------------------
T ss_pred ----------------------------------------HHh-------------------------------------
Confidence 000
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcc
Q 004118 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKH 584 (773)
Q Consensus 506 g~~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcff-lDp~~g~~ 584 (773)
..|++.|+. ++. ..+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+-.| .+| +
T Consensus 428 --------~~~~i~~~~-~~n-----~G~~~a~n~g~~~----a~g~~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~ 484 (625)
T 2z86_A 428 --------NHPRVRFIS-QKN-----KGIGSASNTAVRL----CRGFYIGQLDSDDF-LEPDAVELCLDEFRKDL----S 484 (625)
T ss_dssp --------TCTTEEEEE-ECC-----CCHHHHHHHHHHH----CCSSEEEECCTTCE-ECTTHHHHHHHHHHHCT----T
T ss_pred --------hCCcEEEEe-CCC-----CCHHHHHHHHHHh----cCCCEEEEECCCcc-cChhHHHHHHHHHHhCC----C
Confidence 013366665 322 2599999999996 68999999999997 5899999999877 466 6
Q ss_pred eEEEccCccccCCCCcccchhhHHHHHHHHhhhccCCCccccccchhhhhHhhhc---CCCC
Q 004118 585 VCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY---GYEP 643 (773)
Q Consensus 585 vafVQtPQrF~N~d~~Dry~n~~~vFfdvi~~GlDG~qgp~y~GTgcv~RR~ALy---G~~P 643 (773)
+++|.+...+.+.+..-........ ....+.+...+++|++.++||+++. ||++
T Consensus 485 ~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~r~~~~~~ggfd~ 541 (625)
T 2z86_A 485 LACVYTTNRNIDREGNLISNGYNWP-----IYSREKLTSAMICHHFRMFTARAWNLTEGFNE 541 (625)
T ss_dssp CSEEEEEEEEECTTSCEEEECCCCS-----SCCHHHHTTSCCCCSCEEEEHHHHTTTTCCCS
T ss_pred eeEEEeeeEEECCCCCEeccCcccc-----cCCHHHHhhcccCCceEEEEHHHHHHhCCCCC
Confidence 7888887666544322110000000 0001112345678889999999984 5554
No 10
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=98.71 E-value=5.6e-08 Score=101.29 Aligned_cols=49 Identities=16% Similarity=0.019 Sum_probs=41.5
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHH
Q 004118 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFE 400 (773)
Q Consensus 347 ~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~ 400 (773)
.-|.|.|+||||| |. ..+..||.|+++..|| ..+.|+|.|||.++-|.+
T Consensus 46 ~~~~vSViIp~yN---~~-~~l~~~l~sl~~q~~~-~~~eiivVDdgS~D~t~~ 94 (329)
T 3ckj_A 46 AGRTISVVLPALD---EE-DTIGSVIDSISPLVDG-LVDELIVLDSGSTDDTEI 94 (329)
T ss_dssp TTCCEEEEEEESS---CT-TTHHHHHHHHGGGBTT-TBSEEEEEECSCCSSHHH
T ss_pred cCCcEEEEEeeCC---CH-HHHHHHHHHHHHhhCC-CCcEEEEEeCCCCchHHH
Confidence 4689999999998 65 5688999999999998 358999999999985544
No 11
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.45 E-value=2.2e-08 Score=115.01 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHHhhhhHhHHHhhCCCCCCch
Q 004118 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPE 427 (773)
Q Consensus 348 lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt~~aL~Eaa~FA~~WVPFCrK~~IepRaPe 427 (773)
.|.|.|+|||+| ++ ..+..||.|+++.+|| .+.|+|.|||.++-|.+.+.+. + +++
T Consensus 1 Mp~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~~---~-------~~~-------- 56 (729)
T 3l7i_A 1 MNKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDEA---I-------KDY-------- 56 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEcCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCCcHHHHHHHH---H-------HhC--------
Confidence 378999999998 55 6789999999999999 6899999999988544433220 0 000
Q ss_pred hhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCCCCCCCCCCCCCcceeeeccCCCC
Q 004118 428 WYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGG 507 (773)
Q Consensus 428 ~YFs~k~d~~~~k~~p~f~~err~mKreYee~k~RI~~L~~~~~~~~~~gw~m~dgt~w~g~~~rdHp~iiqv~l~~~g~ 507 (773)
+
T Consensus 57 -------------------------------------------------------------------~------------ 57 (729)
T 3l7i_A 57 -------------------------------------------------------------------D------------ 57 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------C------------
Confidence 0
Q ss_pred CCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 004118 508 LDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (773)
Q Consensus 508 ~d~~g~~lP~lvYvSReKrpg~~hh~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflDp 579 (773)
+++.|+..++. ...++|+|.+++. +.|+||+.+|+|.+ ..|++|.+.+..|.++
T Consensus 58 --------~~i~~i~~~~n-----~G~~~arN~gi~~----A~gdyI~flD~Dd~-~~p~~l~~l~~~l~~~ 111 (729)
T 3l7i_A 58 --------KNIRFIDLDEN-----SGHAHARNIALEE----VETPYFMFLDADDE-LASYAITFYLEKFNNT 111 (729)
T ss_dssp ------------------------------------------------------------------------
T ss_pred --------CCEEEEECCCC-----CCHHHHHHHHHHh----ccCCEEEEECCCCC-CChhHHHHHHHHhcCC
Confidence 12445554432 2479999999985 68999999999998 5899999999988754
No 12
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=98.11 E-value=1.1e-05 Score=87.41 Aligned_cols=50 Identities=24% Similarity=0.228 Sum_probs=41.0
Q ss_pred cchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcceEEEcc
Q 004118 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQF 590 (773)
Q Consensus 533 ~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcff-lDp~~g~~vafVQt 590 (773)
.|++|+|.+++. +.|+||+.+|+|....+|++|.+.+-.+ .+| ++.+|..
T Consensus 166 G~g~A~n~G~~~----A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p----~~d~v~G 216 (387)
T 3f1y_A 166 GKGDAMWRALSV----TRGDLVLYIDADTRDFRPQLAYGVLGPVLEVP----GVRFVKA 216 (387)
T ss_dssp SHHHHHHHHTTT----CCSSEEEECCTTCSSCCTHHHHTTHHHHHHST----TCCEEEE
T ss_pred CHHHHHHHHHHh----cCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCC----CceEEEE
Confidence 599999999985 5899999999999635889999999877 455 4556655
No 13
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=98.02 E-value=6.3e-06 Score=94.94 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=39.8
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEecCCCch
Q 004118 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKV-SCYVSDDGAAM 396 (773)
Q Consensus 346 ~~lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl-~~YVsDDG~s~ 396 (773)
..-|.|.|+||||| ++ ..+.++|.|+++..|+.++. .|+|.|||.++
T Consensus 177 ~~~pkVSVVIptYN---~~-~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD 224 (657)
T 4fix_A 177 PGTANIAVGIPTFN---RP-ADCVNALRELTADPLVDQVIGAVIVPDQGERK 224 (657)
T ss_dssp CSCCCEEEECCBSS---CH-HHHHHHHHHHTTSHHHHTTEEEEEEEECSSSC
T ss_pred CCCCeEEEEEEecC---CH-HHHHHHHHHHHcCccccCCCCEEEEEECcCCC
Confidence 34689999999998 54 68899999999999866555 89999999975
No 14
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.53 E-value=0.0035 Score=53.76 Aligned_cols=53 Identities=30% Similarity=0.829 Sum_probs=43.6
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
....|.||-+.+-+ +.-.|.+| .||.-+|+.|+.--.++++..||.|+.+|..
T Consensus 10 ~~~~CpICle~~~~--~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLEI--DDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCCT--TTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCcc--cccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34589999997633 33468888 9999999999987777788999999999964
No 15
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=96.34 E-value=0.0034 Score=67.50 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=37.7
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 004118 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 396 (773)
Q Consensus 348 lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~ 396 (773)
|+.+-|+|.||| -| . +..|+-|+++..++.++..++|+|||...
T Consensus 1 ~~~~pViI~~yN---Rp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIACD---RS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEESS---CT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEECC---cH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 456779999998 77 5 99999999999977778889999999864
No 16
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=96.14 E-value=0.014 Score=58.29 Aligned_cols=45 Identities=7% Similarity=0.096 Sum_probs=38.0
Q ss_pred hhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhcC-----CCCCcceEEE
Q 004118 535 AGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD-----PNLGKHVCYV 588 (773)
Q Consensus 535 AGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcfflD-----p~~g~~vafV 588 (773)
|.|+|.+++. +.|+||+.||.|-++ .+++|.+.+-+|.. | +++.|
T Consensus 63 a~a~N~Gi~~----A~g~yl~fln~D~~~-~~~~l~~l~~~~~~~~~~~~----~vg~v 112 (249)
T 2nxv_A 63 FSWHKQMLPR----CKGRYVIFCHEDVEL-VDRGYDDLVAAIEALEEADP----KWLVA 112 (249)
T ss_dssp TTHHHHHGGG----CCSSEEEEEETTEEC-SSCCHHHHHHHHHHHHHHCT----TEEEE
T ss_pred HHHHHHHHHh----cCCCEEEEECCCccc-CccHHHHHHHHHHhcccCCC----CeeEE
Confidence 6789999985 689999999999986 78999999998863 7 56665
No 17
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=95.70 E-value=0.086 Score=57.57 Aligned_cols=46 Identities=17% Similarity=-0.045 Sum_probs=34.4
Q ss_pred ccchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHHHhhc
Q 004118 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM 577 (773)
Q Consensus 532 h~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~amcffl 577 (773)
..|.+||+++++..-..+.|++|+.+|||-.-.+|+.+.+.+-.+.
T Consensus 74 ~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~ 119 (397)
T 2bo4_A 74 PGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAAD 119 (397)
T ss_dssp SSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 4699999999932100268999999999984237889998887664
No 18
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=93.46 E-value=0.39 Score=52.82 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=29.2
Q ss_pred cchhhhHHHHHhhccCCCCCEEEEecCCCCCCcHHHHHHHH
Q 004118 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM 573 (773)
Q Consensus 533 ~KAGALNalLrvSa~ltngpfIlnlDcDh~~nnp~~Lr~am 573 (773)
.|..||-+++.++.. ..+++|+.+|||-++ |.++.+.+
T Consensus 144 GKG~Am~aGl~~A~~-~~gd~Vv~~DaDl~i--P~~v~~~~ 181 (394)
T 2zu9_A 144 GKGEGMLVGLLLAKA-IGAEYVGFVDADNYI--PGAVNEYV 181 (394)
T ss_dssp SHHHHHHHHHHHHHH-TTCSEEEECCSCBSC--HHHHHHHH
T ss_pred ChHHHHHHHHHHHhh-CCCCEEEEEeCCCCC--HHHHHHHH
Confidence 699999999986421 289999999999974 66665543
No 19
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=92.96 E-value=0.12 Score=53.79 Aligned_cols=39 Identities=10% Similarity=0.016 Sum_probs=32.0
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHH---cCCCCCCCcEEEEecC
Q 004118 348 LAAVDIFVSTVDPLKEPPLVTANTVLSIL---AVDYPVDKVSCYVSDD 392 (773)
Q Consensus 348 lP~VDVfV~T~dP~kEPp~vt~nTVlSil---alDYP~~Kl~~YVsDD 392 (773)
.|.|.|+|||+| ++ ..+..+|.|++ +..|+ .+.|+|.||
T Consensus 64 ~~~VSIIIP~yN---~~-~~L~~~L~sl~~~l~q~~~--~~EIiVVdd 105 (287)
T 2fy7_A 64 PHKVAIIIPFRN---RQ-EHLKYWLYYLHPVLQRQQL--DYGIYVINQ 105 (287)
T ss_dssp SCEEEEEEEESS---CH-HHHHHHHHHHHHHHHHTTC--EEEEEEEEE
T ss_pred CCcEEEEEeeCC---CH-HHHHHHHHHHHHHHHHhcC--CceEEEEEe
Confidence 689999999998 65 67788888887 56676 578999998
No 20
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=89.08 E-value=0.35 Score=39.50 Aligned_cols=51 Identities=29% Similarity=0.600 Sum_probs=36.9
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCC---CcchhhhHhHHh-hCCCCCCCcccccc
Q 004118 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYERK-DGNQSCPQCKTRYK 70 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~F---PVCRpCYeyErk-eG~q~CPqCkt~Yk 70 (773)
..+..|.||-++ .+++++.+| .|.= -|=+.|.+-=++ .|+..||.|+++|.
T Consensus 4 ~~~~~CrIC~~~----~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEE----LGNERFRAC-GCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEE----CSCCCCCSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecC----CCCceecCc-CCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 455699999775 234578888 6643 455678765555 47899999999996
No 21
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=88.47 E-value=1.4 Score=48.30 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=32.1
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 004118 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (773)
Q Consensus 348 lP~VDVfV~T~dP~kEPp~vt~nTVlSilalDYP~~Kl~~YVsDDG~s~lt 398 (773)
+..+.|+||+|| |.. +++-++|+.-|. ...|+|.|||..+-|
T Consensus 52 ~~klSIVVPvYN---Ee~----~lLesVl~qi~~--d~eIIlVdDGS~D~s 93 (391)
T 2wvl_A 52 LEQTAIVVPTRN---ERL----KLLEGVLSGIPH--EALILVASNSSPDRF 93 (391)
T ss_dssp HTTEEEEEEESS---CCH----HHHHHHHHTSCT--TSEEEEEECCCHHHH
T ss_pred HhceEEEEeccC---cHH----HHHHHHHhcCCC--CceEEEEECCCCCCh
Confidence 567999999999 774 346666666554 578999999997744
No 22
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.25 E-value=0.54 Score=37.39 Aligned_cols=55 Identities=27% Similarity=0.704 Sum_probs=39.9
Q ss_pred cCCccccccCCCcccCC-CCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 15 VGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~-~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
.....|.||-+.+.-.. .++.++.- .|+--.|+.|.+--.+. +..||-|++++.+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 34568999999865443 34444444 78999999999654444 6899999998753
No 23
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=87.39 E-value=0.27 Score=39.56 Aligned_cols=56 Identities=27% Similarity=0.698 Sum_probs=40.9
Q ss_pred cccCCccccccCCCcccCC-CCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 13 KNVGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 13 ~~~~~~~C~iCgd~Vg~~~-~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
.......|.||-+.+.-.. +++..+.- .|+--.|+.|.+--.+. +..||.|++++.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 62 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc-CCCCCCCCCccC
Confidence 3445668999999876543 45554444 89999999999654444 479999999885
No 24
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.30 E-value=0.72 Score=39.63 Aligned_cols=57 Identities=21% Similarity=0.480 Sum_probs=40.9
Q ss_pred ccccCCccccccCCCcccCCCCCceeecCCCC---CCcchhhhHhHHhh-CCCCCCCccccccc
Q 004118 12 IKNVGGQVCQICGDNVGKTVDGNPFVACDVCA---FPVCRPCYEYERKD-GNQSCPQCKTRYKK 71 (773)
Q Consensus 12 ~~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~---FPVCRpCYeyErke-G~q~CPqCkt~Ykr 71 (773)
........|.||-++. ++++.+..+| .|. --+.+.|.+-=.+. ++..||.|++.|.-
T Consensus 10 ~~~~~~~~C~IC~~~~--~~~~~l~~pC-~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 10 ITPSSQDICRICHCEG--DDESPLITPC-HCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCCTTSCCCSSSCCCC--CSSSCEECSS-SCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCCeEcCccc--cCCCeeEecc-ccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3345567999998874 3445667778 563 67999999655444 45799999999964
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=86.33 E-value=0.5 Score=38.98 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=37.8
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
..-.|.||.+.. . ++.+. .|+.-.|+.|.+--.+.|+..||.|++++.
T Consensus 7 ~~~~C~IC~~~~-~----~Pv~~--~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELM-K----DPVIV--STGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCC-S----SEEEE--TTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred ccCCCCCccccc-c----CCEEc--CCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 355899998753 2 24443 699999999998878788899999999874
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.32 E-value=0.61 Score=37.28 Aligned_cols=53 Identities=25% Similarity=0.587 Sum_probs=37.2
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
...|.||-+++-.+.. ..++.= .||--.|+.|.+--...++..||.|++++.+
T Consensus 3 ~~~C~IC~~~~~~~~~-~~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS-LKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSS-CCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCc-cCeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4589999884333221 122332 6899999999976556677899999999864
No 27
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=85.86 E-value=0.54 Score=44.47 Aligned_cols=47 Identities=28% Similarity=0.743 Sum_probs=37.7
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
.|.||-+.+. ++ |.+..|+--.|+.|.+--.+.++..||.|++++..
T Consensus 56 ~C~IC~~~~~-----~p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 56 MCPICLDMLK-----NT-MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp BCTTTSSBCS-----SE-EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCcccChHhh-----Cc-CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 8999987753 13 33347899999999988888888999999999853
No 28
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=85.53 E-value=1.4 Score=35.36 Aligned_cols=53 Identities=19% Similarity=0.427 Sum_probs=36.6
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccccc
Q 004118 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~ 72 (773)
.....|.||-+.+. +++..+.- .|+--.|+.|..--.+. +..||-|+++....
T Consensus 12 ~~~~~C~IC~~~~~---~~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILE---EGEDVRRL-PCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCC---SSSCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCcccc---CCCcEEEe-CCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 44568999998763 23333333 58888999999544433 46799999988643
No 29
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=84.76 E-value=0.35 Score=37.95 Aligned_cols=53 Identities=26% Similarity=0.680 Sum_probs=38.8
Q ss_pred CccccccCCCcccCC-CCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 17 GQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~-~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
...|.||-+...... .++..+.- .|+--.|+.|.+--.+. +..||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 458999999865543 44444444 78999999999654444 6899999998853
No 30
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=84.05 E-value=2.6 Score=34.55 Aligned_cols=53 Identities=19% Similarity=0.461 Sum_probs=36.8
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccccc
Q 004118 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~ 72 (773)
.....|.||-+.+.. ++..+.- .|+--.|+.|..--.+ .+..||-|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~~~-~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYAL---GESVRQL-PCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCT---TSCEEEC-TTSCEEETTTTHHHHT-TTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccC---CCCEEEe-CCCCeecHHHHHHHHH-cCCcCcCcCCccCCc
Confidence 456699999988643 2333222 4788899999964443 457999999998643
No 31
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.77 E-value=0.84 Score=36.93 Aligned_cols=49 Identities=31% Similarity=0.633 Sum_probs=36.6
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh--hCCCCCCCccccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK--DGNQSCPQCKTRYKK 71 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErk--eG~q~CPqCkt~Ykr 71 (773)
....|.||-+.+. ++.+ . .|+--.|+.|..--.+ .++..||.|++++..
T Consensus 19 ~~~~C~IC~~~~~-----~~~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQ-----KPVT-I-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCS-----SEEE-C-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccC-----CeEE-c-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4558999998754 2333 2 7899999999976554 366799999999864
No 32
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=83.73 E-value=1.4 Score=33.78 Aligned_cols=50 Identities=18% Similarity=0.468 Sum_probs=35.1
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Y 69 (773)
....|.||-+.+.. |+..+....|+--.|+.|..--. ..+..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELED---GEEARFLPRCGHGFHAECVDMWL-GSHSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCT---TSCCEECSSSCCEECTTHHHHTT-TTCCSCSSSCCCS
T ss_pred CCCcCccCCccccC---CCceEECCCCCCcccHHHHHHHH-HcCCcCcCCCCEe
Confidence 45689999988643 33334443588889999995333 3468999999865
No 33
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=83.20 E-value=1.3 Score=33.87 Aligned_cols=50 Identities=28% Similarity=0.598 Sum_probs=35.8
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Y 69 (773)
....|.||-+.+... ++. +..-.|+--.|+.|..--.+.. ..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~~--~~~-~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTS--RVV-AHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTT--TSC-EEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCcCcccChhhcCC--CcC-eEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 456899999886422 222 3334688899999997655555 8999999875
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=82.69 E-value=0.93 Score=40.85 Aligned_cols=47 Identities=28% Similarity=0.656 Sum_probs=35.8
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
..|.||-+.+- ++.+ - .|+--.|+.|.+--.+.+...||.|++++..
T Consensus 53 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF-----RPIT-T-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc-----CcEE-e-eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47999988754 2322 2 6899999999976666666799999999953
No 35
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.22 E-value=0.92 Score=36.33 Aligned_cols=49 Identities=18% Similarity=0.453 Sum_probs=37.2
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
....|.||.+.+. ++.+ -.|+--.|+.|.+--.+.++..||.|++++..
T Consensus 14 ~~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLC-----SPKQ--TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEES-----SCCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhc-----CeeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3468999988753 1222 26888899999987776778899999999854
No 36
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=81.77 E-value=1.4 Score=38.80 Aligned_cols=60 Identities=23% Similarity=0.433 Sum_probs=41.7
Q ss_pred CCccccccCCCcccCC-----------CCCceeecCCCCCCcchhhhHhHHh----hCCCCCCCccccccccCCC
Q 004118 16 GGQVCQICGDNVGKTV-----------DGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKTRYKKHKGS 75 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~-----------~Ge~FVAC~EC~FPVCRpCYeyErk----eG~q~CPqCkt~Ykr~kGs 75 (773)
....|.||-+.+...+ +-..++..-.|+=-.|+.|..-=.+ ..+..||-|++.|...+|.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~ 98 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGT 98 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCC
Confidence 4468999988865432 1123444557888999999975554 4567999999999765443
No 37
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.62 E-value=2.9 Score=34.28 Aligned_cols=49 Identities=29% Similarity=0.797 Sum_probs=35.4
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh-----hCCCCCCCccccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-----DGNQSCPQCKTRYKK 71 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErk-----eG~q~CPqCkt~Ykr 71 (773)
....|.||-+..-- +. .. .|+--.|+.|..--.+ .+...||.|++++..
T Consensus 18 ~~~~C~IC~~~~~~-----p~-~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQ-----PL-SL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSS-----CB-CC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCC-----ce-eC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34589999987531 22 22 5888999999965433 357899999999853
No 38
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=79.67 E-value=3.5 Score=33.72 Aligned_cols=49 Identities=29% Similarity=0.764 Sum_probs=35.5
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhh-----CCCCCCCccccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD-----GNQSCPQCKTRYKK 71 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErke-----G~q~CPqCkt~Ykr 71 (773)
....|.||-+...- + +.. .|+--.|+.|..--.+. +...||.|++++..
T Consensus 18 ~~~~C~IC~~~~~~-----p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKE-----P-VSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSS-----C-EEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCc-----c-eeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34589999887532 2 223 58889999999765444 47899999998853
No 39
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.07 E-value=2.2 Score=35.55 Aligned_cols=53 Identities=21% Similarity=0.423 Sum_probs=37.4
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhh--CCCCCCCccccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD--GNQSCPQCKTRYKK 71 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErke--G~q~CPqCkt~Ykr 71 (773)
....|.||-+....+ ....+.- .|+--.|+.|..--.+. +...||.|++++..
T Consensus 14 ~~~~C~IC~~~~~~~--~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEE--QLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTT--SSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCcccccc--CCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 345899999875432 2223334 68999999999765544 36899999999853
No 40
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=77.88 E-value=2.1 Score=38.34 Aligned_cols=46 Identities=22% Similarity=0.494 Sum_probs=35.7
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
-.|.||.+.+- ++ |.. .|+--.|+.|.+--.+.++..||.|++++.
T Consensus 19 ~~C~IC~~~~~-----~p-~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCcCChhhc-----Ce-EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 48999997653 23 334 689999999998777776669999998874
No 41
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=77.49 E-value=2.3 Score=42.30 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=37.0
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
..--.|.||.+-. -++.+. .||.-.||.|-+--.+++...||.|+++..
T Consensus 206 ~~~~~c~i~~~~~-----~dPv~~--~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELM-----REPCIT--PSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBC-----SSEEEC--SSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CcccCCcCcCCHh-----cCCeEC--CCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 4455899997642 234443 489999999998777777677999999884
No 42
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=77.18 E-value=1.6 Score=43.13 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=36.5
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
..-+|.||++- +. ++.+. .||+-.||.|-+--.+.+...||.|++++.
T Consensus 105 ~~f~CPI~~el-m~----DPV~~--~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFEL-MR----EPCIT--PSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HhhcccCcccc-CC----CCeEC--CCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 34489999864 33 46666 499999999998777664457999999884
No 43
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=76.80 E-value=0.54 Score=45.46 Aligned_cols=52 Identities=19% Similarity=0.420 Sum_probs=43.6
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccc
Q 004118 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~ 68 (773)
.+...|.+|+...|+- +..-+.|..|...||+.|-.|-++++.=.|--|-..
T Consensus 66 ~~~~~C~~C~~~fg~l--~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 66 LNETHCARCLQPYRLL--LNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGGTBCTTTCCBGGGC--SSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCCccchhhcCccccc--cCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 3567999999998887 344789999999999999998888888888877544
No 44
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=76.76 E-value=2.1 Score=37.38 Aligned_cols=48 Identities=21% Similarity=0.531 Sum_probs=38.0
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
...|.||-+.+- .-|.|-.|+--.|+.|..--.+.....||.|++++.
T Consensus 22 ~~~C~IC~~~~~------~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLR------DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCS------SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCcccc------CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 347999998763 245667899999999997666666679999999984
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=75.17 E-value=1.2 Score=39.53 Aligned_cols=48 Identities=25% Similarity=0.742 Sum_probs=36.7
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
.-.|.||-+..- ++.+. .|+--.|+.|..--.+.++..||.|++++..
T Consensus 15 ~~~C~iC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV-----EPVTL--PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS-----SCEEC--TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC-----ceeEc--CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 457999997753 23332 6899999999976666777899999999863
No 46
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=71.89 E-value=4.4 Score=32.23 Aligned_cols=50 Identities=24% Similarity=0.479 Sum_probs=34.7
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~ 72 (773)
....|.||-+... +.. ..-.|+--.|+.|..--.+ .+..||-|++++...
T Consensus 4 ~~~~C~IC~~~~~-----~~~-~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPS-----NYS-MALPCLHAFCYVCITRWIR-QNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCC-----SCE-EETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCcccc-----CCc-EecCCCCeeHHHHHHHHHh-CcCcCcCCChhhHhh
Confidence 3458999998853 111 2235788899999965443 448999999998643
No 47
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=71.73 E-value=3.4 Score=35.56 Aligned_cols=48 Identities=19% Similarity=0.424 Sum_probs=34.6
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
...|.||-+... ++.+ ...|+--.|+.|..--.+ .+..||.|++++..
T Consensus 22 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFN-----IAMI-IPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCS-----SEEE-CTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCCcccCChhhC-----CcCE-ECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 358999988753 1322 236899999999965544 45899999998853
No 48
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.32 E-value=6.4 Score=31.86 Aligned_cols=52 Identities=17% Similarity=0.441 Sum_probs=36.7
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
.....|.||-+.+.. ++..+.. .|+--.|+.|..--.+. +..||-|++++..
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~~~-~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKP---RDELGIC-PCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCS---SSCEEEE-TTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCC---CCcEEEc-CCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 345689999998543 3334433 48888999999644444 4699999998854
No 49
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.68 E-value=11 Score=30.56 Aligned_cols=48 Identities=19% Similarity=0.496 Sum_probs=34.9
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
...|.||-+..-- +. ....|+--.|+.|..--.+. +..||.|++++..
T Consensus 15 ~~~C~IC~~~~~~-----p~-~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 15 YILCSICKGYLID-----AT-TITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGSCTTTSSCCSS-----CE-ECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred CCCCCCCChHHHC-----cC-EECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 4589999876432 22 22367888899999665544 6899999999864
No 50
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.61 E-value=2.6 Score=34.50 Aligned_cols=53 Identities=17% Similarity=0.397 Sum_probs=36.8
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccccc
Q 004118 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~ 72 (773)
.....|.||-+.+.. ++..+.- .|+--.|+.|..--.+. +..||-|+.++...
T Consensus 21 ~~~~~C~IC~~~~~~---~~~~~~l-~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFES---RQLLRVL-PCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCB---TCEEEEE-TTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCC---CCeEEEE-CCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 345689999988643 3333333 47888999999644443 57999999887544
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=68.14 E-value=3.8 Score=38.66 Aligned_cols=46 Identities=28% Similarity=0.639 Sum_probs=35.3
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
..|.||-+.+- ++.+ -.|+--.|+.|..--.+.++..||.|++++.
T Consensus 79 ~~C~IC~~~~~-----~pv~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT--TECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp TBCTTTSSBCS-----SEEE--CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CEeecCChhhc-----CCEE--cCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 47999988642 2333 2789899999997777767679999999985
No 52
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=67.97 E-value=3.9 Score=38.65 Aligned_cols=47 Identities=21% Similarity=0.492 Sum_probs=37.2
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
-.|.||.+.+- ++ |.+ .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 19 ~~C~IC~~~~~-----~p-v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhc-----Cc-EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 48999998642 23 446 7999999999988777777799999988743
No 53
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.89 E-value=9.6 Score=29.90 Aligned_cols=43 Identities=28% Similarity=0.668 Sum_probs=31.7
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhh--CCCCCCCc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD--GNQSCPQC 65 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErke--G~q~CPqC 65 (773)
....|.||-+.+- ++.+. .|+--.|+.|.+--.+. ++..||.|
T Consensus 19 ~~~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS-----SCEEC--TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC-----CeEEe--CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3458999988753 23332 68999999999766654 66789988
No 54
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=66.71 E-value=6 Score=33.39 Aligned_cols=49 Identities=22% Similarity=0.582 Sum_probs=34.6
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh-hCCCCCCCcccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-DGNQSCPQCKTRYK 70 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErk-eG~q~CPqCkt~Yk 70 (773)
..-.|.||.+..- ++.+ -..|+--.|+.|.+--.+ .+...||.|++++.
T Consensus 12 ~~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECS-----SCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhc-----CceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3458999997542 2322 223899999999965544 35579999999873
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=66.62 E-value=3.6 Score=36.46 Aligned_cols=47 Identities=6% Similarity=-0.106 Sum_probs=35.0
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
..-.|.||++- +. ++.+.- ||.-.||.|-+--.+ ++..||.|+.++.
T Consensus 28 ~~~~CpI~~~~-m~----dPV~~~--cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTL-MT----DPVRLP--SGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSB-CS----SEEEET--TTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred HhhCCcCccCc-cc----CCeECC--CCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 34589999753 33 354443 899999999976665 5789999999884
No 56
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=66.60 E-value=3.6 Score=35.24 Aligned_cols=49 Identities=20% Similarity=0.526 Sum_probs=35.1
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
...|.||-+.+. +|+..+.. -|+--.|+.|..--. ..+..||-|+.++.
T Consensus 40 ~~~C~IC~~~~~---~~~~~~~l-~C~H~Fh~~Ci~~wl-~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 40 EMCCPICCSEYV---KGDVATEL-PCHHYFHKPCVSIWL-QKSGTCPVCRCMFP 88 (91)
T ss_dssp CSEETTTTEECC---TTCEEEEE-TTTEEEEHHHHHHHH-TTTCBCTTTCCBSS
T ss_pred CCCCcccChhhc---CCCcEEec-CCCChHHHHHHHHHH-HcCCcCcCcCccCC
Confidence 457999988764 34554444 488889999985433 45679999998763
No 57
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=66.44 E-value=3.7 Score=35.09 Aligned_cols=47 Identities=6% Similarity=-0.101 Sum_probs=34.8
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
..-+|.||++- +. ++.+. .||.-.||.|-+--.+ ++..||.|++++.
T Consensus 13 ~~~~CpI~~~~-m~----dPV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTL-MT----DPVRL--PSGTVMDRSIILRHLL-NSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred hheECcccCch-hc----CCeEC--CCCCEECHHHHHHHHh-cCCCCCCCcCCCC
Confidence 34589999763 33 24443 3899999999977666 4689999999884
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.37 E-value=5.5 Score=33.53 Aligned_cols=56 Identities=23% Similarity=0.444 Sum_probs=38.7
Q ss_pred cCCccccccCCCcccC--------CCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 15 VGGQVCQICGDNVGKT--------VDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~--------~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
.....|.||-+++.-. ..++..+.-..|+=-.|+.|.+-=.+ .++.||-|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence 4567899999987542 23443333337888999999854333 45799999998854
No 59
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.43 E-value=5.1 Score=34.82 Aligned_cols=46 Identities=26% Similarity=0.621 Sum_probs=33.1
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh--hCCCCCCCcccccc
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK--DGNQSCPQCKTRYK 70 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErk--eG~q~CPqCkt~Yk 70 (773)
..|.||-+..- ++.+ . .|+--.|+.|..--.+ .+...||.|++++.
T Consensus 22 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 48999988652 1222 2 6899999999975544 34468999999875
No 60
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.28 E-value=9.7 Score=31.47 Aligned_cols=47 Identities=23% Similarity=0.459 Sum_probs=34.5
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
....|.||-+.+- ++.+ -.|+--.|+.|..--.+ .+..||.|++++.
T Consensus 14 ~~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ-----NPVV--TKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC-----SEEE--CTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc-----CeeE--ccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 3458999988762 1333 26888899999965554 3689999999884
No 61
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=64.24 E-value=5.1 Score=35.07 Aligned_cols=48 Identities=21% Similarity=0.553 Sum_probs=35.0
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
.-.|.||.+..- ++.+ ...|+--.|+.|..--.+. +..||.|++.+..
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATT-IIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCS-----SEEE-ETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChHHh-----CcCE-eCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 458999988752 2333 3368999999999655554 4899999998853
No 62
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=63.74 E-value=4.9 Score=36.98 Aligned_cols=44 Identities=27% Similarity=0.608 Sum_probs=31.7
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
.|.||-+..- ++ |.. .|+--.|+.|..--. ..+..||.|+++.+
T Consensus 55 ~C~iC~~~~~-----~~-~~~-~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCIICSEYFI-----EA-VTL-NCAHSFCSYCINEWM-KRKIECPICRKDIK 98 (138)
T ss_dssp BCTTTCSBCS-----SE-EEE-TTSCEEEHHHHHHHT-TTCSBCTTTCCBCC
T ss_pred CCcccCcccC-----Cc-eEC-CCCCCccHHHHHHHH-HcCCcCCCCCCcCC
Confidence 6999988652 12 223 588899999985433 44678999999875
No 63
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=63.44 E-value=4.2 Score=37.11 Aligned_cols=48 Identities=25% Similarity=0.708 Sum_probs=33.3
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccccc
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~ 72 (773)
.|.+|+-.|-.- |. .++| .=-.|-.|+..-.+.+.+.||.|+.+..|.
T Consensus 3 fC~~C~~Pi~iy--gR-mIPC---kHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVY--GR-MIPC---KHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEE--EE-EETT---CCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEE--ee-eccc---cccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 466666554321 21 2333 445699999877889999999999999876
No 64
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=63.24 E-value=5 Score=35.78 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=33.2
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
.-.|.||-+... ++.+.. .|+--.|+.|..--.+ ..||.|++++.
T Consensus 22 ~~~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhh-----CccEeC-CCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 458999987652 343333 6899999999965444 78999999984
No 65
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=63.19 E-value=6.1 Score=34.94 Aligned_cols=48 Identities=27% Similarity=0.542 Sum_probs=36.6
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
...|.||-+.+- ++.+ . .|+--.|+.|..--.+.++..||.|+.++..
T Consensus 23 ~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILA-----DPVE-T-SCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCS-----SEEE-C-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhc-----CcEE-c-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 348999987752 2333 3 7899999999977777767899999999853
No 66
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=62.45 E-value=7.4 Score=31.88 Aligned_cols=50 Identities=22% Similarity=0.586 Sum_probs=35.4
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhh-CCCCCCCccccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD-GNQSCPQCKTRYKK 71 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErke-G~q~CPqCkt~Ykr 71 (773)
....|.||-+..- ++.+ -..|+--.|+.|.+--.+. +...||.|++++.+
T Consensus 14 ~~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCT-----TCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHh-----CCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3458999977643 2322 3348999999999766554 45799999997644
No 67
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=61.60 E-value=4.6 Score=38.13 Aligned_cols=38 Identities=29% Similarity=0.674 Sum_probs=30.9
Q ss_pred ccCCccccccCCCcccC-CCCCceeecCCCCCCcchhhhHhH
Q 004118 14 NVGGQVCQICGDNVGKT-VDGNPFVACDVCAFPVCRPCYEYE 54 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~-~~Ge~FVAC~EC~FPVCRpCYeyE 54 (773)
+.+...|.+|+...|+- ..| +.|..|...||+-|-.+-
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g---~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSAS---VVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCE---EECTTTCCEEETTSEEEC
T ss_pred cCCCccccccCCCcccccCCC---CCCCCCCcccccccCCcc
Confidence 45677999999999754 334 889999999999998653
No 68
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=60.06 E-value=3.7 Score=36.34 Aligned_cols=56 Identities=25% Similarity=0.665 Sum_probs=40.6
Q ss_pred ccCCccccccCCCcccC-CCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 14 NVGGQVCQICGDNVGKT-VDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~-~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
......|.||-+.+... +.+...+.+ .|+-..|..|.+--.+. +..||.|++.+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 34556899998876543 345555656 89999999999655544 4799999999853
No 69
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=59.72 E-value=2.9 Score=34.14 Aligned_cols=48 Identities=31% Similarity=0.792 Sum_probs=34.2
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhh------CCCCCCCccccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD------GNQSCPQCKTRYKK 71 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErke------G~q~CPqCkt~Ykr 71 (773)
...|.||-+..-- +.+ . .|+--.|+.|..--.+. +...||.|++++..
T Consensus 12 ~~~C~IC~~~~~~-----p~~-l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTE-----PLS-L-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSS-----CCC-C-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCC-----eeE-C-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4589999887521 222 2 68889999999644333 36899999999853
No 70
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=59.08 E-value=6.5 Score=34.68 Aligned_cols=46 Identities=15% Similarity=0.072 Sum_probs=34.1
Q ss_pred CccccccCCCcccCCCCCceeecCCCC-CCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~-FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
.-+|.||.+- +. ++.+. .|+ .-.||.|.+--.++ +..||.|++++.
T Consensus 22 ~~~CpI~~~~-m~----dPV~~--~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 22 EFLDPIMSTL-MC----DPVVL--PSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTBCTTTCSB-CS----SEEEC--TTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred hcCCcCcccc-cc----CCeEC--CCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 4589999753 33 24443 478 99999999766665 689999999884
No 71
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=58.83 E-value=1.5 Score=37.08 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=28.9
Q ss_pred CcchhhhHhHHhhCCCCCCCccccccccCCCCcccCCC
Q 004118 45 PVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDR 82 (773)
Q Consensus 45 PVCRpCYeyErkeG~q~CPqCkt~Ykr~kGs~rv~gd~ 82 (773)
|+|+.=.+|...+|.-+|+.|+..|--..|-|..--||
T Consensus 14 P~ck~~L~~~~~~g~LvC~~c~~~YPI~dGIPvmL~~E 51 (67)
T 2jny_A 14 PKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDE 51 (67)
T ss_dssp TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCSSC
T ss_pred CCCCCcCeEeCCCCEEEcCCCCccccCCCCEeeeChhH
Confidence 44444344555678889999999999999999888773
No 72
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=57.62 E-value=5.4 Score=45.07 Aligned_cols=38 Identities=18% Similarity=0.428 Sum_probs=32.0
Q ss_pred cccCCccccccCCCc-ccCCCCCceeecCCCCCCcchhhhHh
Q 004118 13 KNVGGQVCQICGDNV-GKTVDGNPFVACDVCAFPVCRPCYEY 53 (773)
Q Consensus 13 ~~~~~~~C~iCgd~V-g~~~~Ge~FVAC~EC~FPVCRpCYey 53 (773)
.-.....|..|++-+ |+.-.| ..|..|+|.||+-|...
T Consensus 525 ~~~~~t~C~~C~~~l~gl~~qg---~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 525 SFEETTSCKACQMLLRGTFYQG---YRCHRCRASAHKECLGR 563 (587)
T ss_dssp CCSSCCBCTTTCSBCCSSSCCE---EEETTTCCEECSGGGGG
T ss_pred eCCCCcccccccccccccccCC---cCCCCCCCccchhhhhc
Confidence 335667999999997 887666 78999999999999965
No 73
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.26 E-value=9.2 Score=30.88 Aligned_cols=50 Identities=16% Similarity=0.373 Sum_probs=35.0
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
......|.||-+.+... +.+ .|+--.|+.|..--.+. +..||.|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~----~~~---~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP----VSL---PCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSE----EEE---TTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCC----EEc---cCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 34566899998875211 233 47888999999643333 4899999999863
No 74
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.77 E-value=8.6 Score=30.74 Aligned_cols=48 Identities=25% Similarity=0.685 Sum_probs=34.9
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~ 72 (773)
....|.||-+.... ...+ |+--.|+.|..- .-..+..||.|++++...
T Consensus 14 ~~~~C~IC~~~~~~-----~~~~---CgH~fc~~Ci~~-~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-----LILP---CAHSFCQKCIDK-WSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-----EEET---TTEEECHHHHHH-SSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-----cccC---CCCcccHHHHHH-HHHCcCcCCCcCCcccCC
Confidence 45689999887432 4444 677789999953 334789999999988643
No 75
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=54.38 E-value=6.9 Score=32.87 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=23.4
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCc
Q 004118 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPV 46 (773)
.-.-+|.-||.++.+... .-+-|.+|++.|
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~--~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAK--EVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCCSS--SCCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecCCC--CceECCCCCcEE
Confidence 345689999999998853 338899999876
No 76
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=54.25 E-value=12 Score=33.73 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=36.6
Q ss_pred cCCccccccCCCcccC----------CCCC-ceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 15 VGGQVCQICGDNVGKT----------VDGN-PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~----------~~Ge-~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
.....|.||-+.+... ..|+ .-+.--.|+---++.|.. ..-..+..||-|+..++
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~-~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS-RWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHH-HHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHH-HHHHcCCcCcCCCCcce
Confidence 3556899999887643 1122 122223789999999984 43345789999999964
No 77
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.91 E-value=13 Score=28.97 Aligned_cols=45 Identities=22% Similarity=0.563 Sum_probs=32.0
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~ 72 (773)
...|.||-+..-. -... .|+--.|+.|..- ....||.|++.....
T Consensus 6 ~~~C~IC~~~~~~----p~~l---~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKC----PKLL---PCLHTLCSGCLEA----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBC----CSCS---TTSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCC----eEEc---CCCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence 4579999886531 1223 4677889999744 678999999988654
No 78
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.86 E-value=10 Score=33.02 Aligned_cols=41 Identities=24% Similarity=0.611 Sum_probs=33.1
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh
Q 004118 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK 56 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErk 56 (773)
+-+...|..|+...|+- ++--+.|..|...||+.|-.+...
T Consensus 22 ~~~~r~CarC~~~LG~l--~~~g~~C~~Ck~rVC~~Crv~~~~ 62 (76)
T 2csz_A 22 HYSDRTCARCQESLGRL--SPKTNTCRGCNHLVCRDCRIQESN 62 (76)
T ss_dssp TCCCCBCSSSCCBCSSS--CTTTSEETTTTEECCTTSEEECST
T ss_pred CCCccchhhhCcccccc--ccCCCcCcccChhhcccccccCCC
Confidence 45566999999999986 444578999999999999877644
No 79
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.11 E-value=9.9 Score=31.23 Aligned_cols=46 Identities=20% Similarity=0.589 Sum_probs=32.5
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCCCC-cchhhhHhHHhhCCCCCCCccccccc
Q 004118 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FP-VCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
......|.||-+.. .--+|++| +=- +|..|.. ..+.||-|+++...
T Consensus 12 ~~~~~~C~IC~~~~----~~~v~~pC---gH~~~C~~C~~-----~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGT----VNWVLLPC---RHTCLCDGCVK-----YFQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSC----CCCEETTT---TBCCSCTTHHH-----HCSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCC----CCEEEECC---CChhhhHHHHh-----cCCCCCCCCcchhc
Confidence 34567899998753 22356666 444 7999997 24899999998854
No 80
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=51.16 E-value=11 Score=38.54 Aligned_cols=48 Identities=21% Similarity=0.688 Sum_probs=38.8
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH-HhhCCCCCCCcccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKTRYK 70 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyE-rkeG~q~CPqCkt~Yk 70 (773)
-..|.+|-+-|..+ +.|..|+-..=+.|+.-- +..++..||.|++...
T Consensus 180 i~~C~iC~~iv~~g------~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQG------QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSC------EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCC------cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 56899999998853 889889999999999654 4446679999999874
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=50.61 E-value=6.6 Score=32.79 Aligned_cols=53 Identities=28% Similarity=0.609 Sum_probs=36.8
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHH---hhCCCCCCCcccccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER---KDGNQSCPQCKTRYKKH 72 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyEr---keG~q~CPqCkt~Ykr~ 72 (773)
....|.+|+.. .+|+..|.|..|.--.=-.|..... .+|.-.||.|...-++.
T Consensus 17 ~~~~C~~C~~~----~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKP----DDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBC----CSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCC----CCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 44579999865 3688999999885443345654332 24788999998876543
No 82
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=50.56 E-value=8.2 Score=41.21 Aligned_cols=38 Identities=21% Similarity=0.488 Sum_probs=31.1
Q ss_pred ccccCCccccccCCCc-ccCCCCCceeecCCCCCCcchhhhH
Q 004118 12 IKNVGGQVCQICGDNV-GKTVDGNPFVACDVCAFPVCRPCYE 52 (773)
Q Consensus 12 ~~~~~~~~C~iCgd~V-g~~~~Ge~FVAC~EC~FPVCRpCYe 52 (773)
........|..|+.-+ |+...| ..|..|++.||+.|..
T Consensus 352 ~~~~~~t~C~~C~~~~~g~~~qg---~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 352 FSFEETTSCKACQMLLRGTFYQG---YRCYRCRAPAHKECLG 390 (406)
T ss_dssp ECCSSCCBCTTTCCBCCSSSSCE---EEETTTCCEECGGGGG
T ss_pred ccCCCCCCCccccchhceeCCCC---CCCCCCcCccchhhhh
Confidence 3345667999999997 776666 5799999999999995
No 83
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=49.55 E-value=6.5 Score=34.70 Aligned_cols=54 Identities=28% Similarity=0.723 Sum_probs=39.4
Q ss_pred CCccccccCCCcccCC-CCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 16 GGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~-~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
+...|.||-+...-.. +|+..+.- .|+--.|+.|.+--.+. +..||.|+..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 4458999998865432 45554554 78999999999655544 4699999999864
No 84
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=49.51 E-value=11 Score=41.46 Aligned_cols=47 Identities=30% Similarity=0.718 Sum_probs=33.2
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccccc
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
..|.||-+..- + -... .|+=-.|+.|..--.+.++..||-|+++...
T Consensus 333 ~~C~ICle~~~---~-pv~l---pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDK---D-VKIE---PCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBC---C-EEEE---TTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCccCcCCC---C-eEEe---CCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 58999977651 1 1233 4566669999955444478999999998865
No 85
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.34 E-value=9.6 Score=31.99 Aligned_cols=53 Identities=23% Similarity=0.444 Sum_probs=32.0
Q ss_pred CccccccCCccccccCCCccc----CCCCCce----eecCCCCCCcchhhhHhHHhhCCCCCCC
Q 004118 9 VKSIKNVGGQVCQICGDNVGK----TVDGNPF----VACDVCAFPVCRPCYEYERKDGNQSCPQ 64 (773)
Q Consensus 9 ~k~~~~~~~~~C~iCgd~Vg~----~~~Ge~F----VAC~EC~FPVCRpCYeyErkeG~q~CPq 64 (773)
.+|.+......|..|+..|.. .+.|..+ ..|.+|.-++=-.+| .++|.-.|..
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~---~~~g~~yC~~ 67 (80)
T 2dj7_A 7 GKPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYI---SKDGVPYCES 67 (80)
T ss_dssp CCCCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSSCCE---EETTEEECTT
T ss_pred CCCcCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCCCeE---EECCEEECHH
Confidence 467777778899999999863 2344443 357788665533222 3455444443
No 86
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=48.25 E-value=8.5 Score=31.09 Aligned_cols=53 Identities=19% Similarity=0.405 Sum_probs=34.3
Q ss_pred ccccCCccccccCCCcccCCCCCceeecCCCCCC-cchhhhHhHHhhCCCCCCCcccccc
Q 004118 12 IKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 12 ~~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FP-VCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
+.......|.||-+...- -+|+.- .||-- .|..|.+--. ..+..||-|+.+..
T Consensus 3 l~~~~~~~C~IC~~~~~~----~~~~~~-pCgH~~~C~~C~~~~~-~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 3 LPLNAIEPCVICQGRPKN----GCIVHG-KTGHLMACFTCAKKLK-KRNKPCPVCRQPIQ 56 (64)
T ss_dssp --CGGGSCCTTTSSSCSC----EEEEET-TEEEEEECHHHHHHHH-HTTCCCTTTCCCCC
T ss_pred CCCCCcCCCCcCCCCCCC----EEEECC-CCCChhhHHHHHHHHH-HcCCcCCCcCcchh
Confidence 344556689999886321 145511 34655 6999997544 45688999999875
No 87
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=46.45 E-value=2.2 Score=36.37 Aligned_cols=41 Identities=24% Similarity=0.650 Sum_probs=31.9
Q ss_pred eeecCCCCCCcchhhhHhHHhhCCCCCCCccccccccCCCCcccCC
Q 004118 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGD 81 (773)
Q Consensus 36 FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~kGs~rv~gd 81 (773)
..+| |+|+.=.+|...+|.-.|+.|+..|--..|-|..--|
T Consensus 8 iL~C-----P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (70)
T 2js4_A 8 ILVC-----PVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEA 48 (70)
T ss_dssp CCBC-----TTTCCBEEEETTTTEEEETTTTEEEEEETTEECCCGG
T ss_pred heEC-----CCCCCcCEEeCCCCEEEcCCCCceecCCCCeeeeChh
Confidence 4667 5555555666678888999999999999998887766
No 88
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.85 E-value=12 Score=30.74 Aligned_cols=43 Identities=33% Similarity=0.715 Sum_probs=30.0
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCC-cchhhhHhHHhhCCCCCCCccccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FP-VCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
...|.||-+..- --++++ |+-- .|+.|.+ ....||-|+++...
T Consensus 25 ~~~C~IC~~~~~----~~~~~p---CgH~~~C~~C~~-----~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVP---CGHLVTCKQCAE-----AVDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSS---SCCCCBCHHHHH-----HCSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC----CEEEec---CCCHHHHHHHhh-----CCCCCccCCceecC
Confidence 347999987631 123444 5666 7999983 24899999998854
No 89
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=45.29 E-value=7.6 Score=36.29 Aligned_cols=46 Identities=22% Similarity=0.562 Sum_probs=36.3
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Y 69 (773)
.-.|.||.+-+- ++ |.. .|+--.|+.|..--.+.++..||.|+++.
T Consensus 31 ~~~C~IC~~~~~-----~p-v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVLR-----RP-FQA-QCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCCCCCChhhc-----Cc-EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 348999987642 23 334 89999999999887788888999999875
No 90
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=43.48 E-value=9.6 Score=45.14 Aligned_cols=58 Identities=28% Similarity=0.701 Sum_probs=42.6
Q ss_pred ccCCccccccCCCcccCCC---CCceeecCCCC--------------------CCcchhhhH-hH----Hh--hCCCCCC
Q 004118 14 NVGGQVCQICGDNVGKTVD---GNPFVACDVCA--------------------FPVCRPCYE-YE----RK--DGNQSCP 63 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~---Ge~FVAC~EC~--------------------FPVCRpCYe-yE----rk--eG~q~CP 63 (773)
.....+|.-|=.++---.| .-+|+.|..|| ||.|..|.. |+ || ----+||
T Consensus 108 ~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~ 187 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACF 187 (761)
T ss_dssp CCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCT
T ss_pred CCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCC
Confidence 3456689999888753222 56899999998 999999963 54 33 1225899
Q ss_pred Cccccccc
Q 004118 64 QCKTRYKK 71 (773)
Q Consensus 64 qCkt~Ykr 71 (773)
.|+=++.-
T Consensus 188 ~CGP~l~l 195 (761)
T 3vth_A 188 DCGPSLSF 195 (761)
T ss_dssp TTSCCEEE
T ss_pred ccCCeeEE
Confidence 99998854
No 91
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=42.98 E-value=23 Score=31.90 Aligned_cols=52 Identities=19% Similarity=0.471 Sum_probs=39.8
Q ss_pred CccccccCCCcc--cCCCCCceeecCCCCCCcchhhhHh------HHhhCCCCCCCcccc
Q 004118 17 GQVCQICGDNVG--KTVDGNPFVACDVCAFPVCRPCYEY------ERKDGNQSCPQCKTR 68 (773)
Q Consensus 17 ~~~C~iCgd~Vg--~~~~Ge~FVAC~EC~FPVCRpCYey------ErkeG~q~CPqCkt~ 68 (773)
..+|.+|...=. ...+++.++.|..|+-..=..|..+ ..++++=.||.|++=
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C 64 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTC 64 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCB
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCcc
Confidence 458999976533 3356778999999988887888864 357889999999853
No 92
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.53 E-value=40 Score=25.48 Aligned_cols=43 Identities=21% Similarity=0.643 Sum_probs=30.5
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhh--CCCCCCCc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD--GNQSCPQC 65 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErke--G~q~CPqC 65 (773)
....|.||-+.+--. ... .|+--.|+.|..--.+. ++..||.|
T Consensus 14 ~~~~C~IC~~~~~~p----~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP----VII---ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC----CCC---SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc----EeC---CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345899999876321 222 57888899999655443 77899988
No 93
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=41.76 E-value=10 Score=31.97 Aligned_cols=53 Identities=28% Similarity=0.669 Sum_probs=40.8
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH-HhhCCCCCCCcccc
Q 004118 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKTR 68 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyE-rkeG~q~CPqCkt~ 68 (773)
..+...|.||++. -..+++..+.|..|.-.+=..||.-. .-+|.=.||.|...
T Consensus 13 ~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCC--CCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCC--CCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4566799999874 23466788999999888888998754 44788999999753
No 94
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=41.43 E-value=12 Score=30.71 Aligned_cols=49 Identities=24% Similarity=0.629 Sum_probs=35.9
Q ss_pred cccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHh---HHhhCCCCCCCcccc
Q 004118 13 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKTR 68 (773)
Q Consensus 13 ~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYey---ErkeG~q~CPqCkt~ 68 (773)
...+...|.+|++. | ..+.|..|.-..=..|+.- +.-+|.-.||.|...
T Consensus 4 ~~~~~~~C~vC~~~------g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 4 AQKNEDECAVCRDG------G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCSCCCSBSSSSCC------S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCCccCCCC------C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 44567799999973 3 5788999976666677752 244688899999754
No 95
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=41.18 E-value=19 Score=29.17 Aligned_cols=49 Identities=24% Similarity=0.718 Sum_probs=37.2
Q ss_pred ccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHh---HHhhCCCCCCCccc
Q 004118 12 IKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKT 67 (773)
Q Consensus 12 ~~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYey---ErkeG~q~CPqCkt 67 (773)
+...+...|.+|++ |...+.|..|.-..=-.|..- +.-+|.-.||.|..
T Consensus 6 ~~~~~~~~C~vC~~-------~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 6 YETDHQDYCEVCQQ-------GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCCCSSCTTTSC-------CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred ccCCCCCCCccCCC-------CCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34556679999997 246788999987777778865 34578999999974
No 96
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.87 E-value=22 Score=31.99 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=32.0
Q ss_pred CCccccccCCCccc----CCCCCce----eecCCCCC---------------CcchhhhHhHHhhCC-CCCCCcccccc
Q 004118 16 GGQVCQICGDNVGK----TVDGNPF----VACDVCAF---------------PVCRPCYEYERKDGN-QSCPQCKTRYK 70 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~----~~~Ge~F----VAC~EC~F---------------PVCRpCYeyErkeG~-q~CPqCkt~Yk 70 (773)
....|..|+..|.- ++.|..+ ..|.+|.= |.|+.||.- +-+. ..|-.|+.+-.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~--~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR--LFGNSGAGGSGGHMGS 80 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHH--HHCCCCSSSCSSCCSC
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHH--HcCCCCccccCCCCcC
Confidence 45678888877642 2334333 23666643 349999843 3443 37999988763
No 97
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.72 E-value=24 Score=29.51 Aligned_cols=64 Identities=23% Similarity=0.563 Sum_probs=36.4
Q ss_pred ccccccCCccccccCCCccc----CCCCCce----eecCCCCCCcchhhhHhHHhhCCCCCCCccccccccCCCC
Q 004118 10 KSIKNVGGQVCQICGDNVGK----TVDGNPF----VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSP 76 (773)
Q Consensus 10 k~~~~~~~~~C~iCgd~Vg~----~~~Ge~F----VAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~kGs~ 76 (773)
.|.+......|..|+..|.. .+.|..| ..|.+|.-++=.-.|-.-.++|.- =|+.-|.+...+|
T Consensus 8 ~~~~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~---yC~~~y~~~~~~~ 79 (82)
T 2co8_A 8 QHQEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHF---YCLQHLPQTDSGP 79 (82)
T ss_dssp CCCCCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCC---EETTTCCCCCCCC
T ss_pred CCcCCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEE---EChHHHHhhhcCC
Confidence 34445566799999999853 3456554 345566555444443110245553 4566677666554
No 98
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=39.53 E-value=11 Score=30.08 Aligned_cols=32 Identities=28% Similarity=0.756 Sum_probs=26.3
Q ss_pred CccccccCCCcccCCCCCceeecCCC-CCCcchhhhHhH
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYE 54 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC-~FPVCRpCYeyE 54 (773)
+..|..|+.+|| .-.-|.+| .|-+|..||.-.
T Consensus 6 ~~~Cd~C~~~ig------~R~~C~~C~dyDLC~~C~~~~ 38 (52)
T 1tot_A 6 VYTCNECKHHVE------TRWHCTVCEDYDLCINCYNTK 38 (52)
T ss_dssp CEEETTTTEEES------SEEEESSSSSCEECHHHHHHH
T ss_pred EEECCCCCCCCc------ceEEcCCCCCchhHHHHHhCC
Confidence 457999999863 46899999 899999999653
No 99
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.17 E-value=52 Score=27.80 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=24.0
Q ss_pred CccccccCCccccccCCCccc----CCCCCce----eecCCCCCC
Q 004118 9 VKSIKNVGGQVCQICGDNVGK----TVDGNPF----VACDVCAFP 45 (773)
Q Consensus 9 ~k~~~~~~~~~C~iCgd~Vg~----~~~Ge~F----VAC~EC~FP 45 (773)
.++.+......|..|+..|.- .+.|..| ..|..|.-+
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~ 51 (91)
T 2d8y_A 7 GMKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNK 51 (91)
T ss_dssp SSCSCSSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCB
T ss_pred CCccCCCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCC
Confidence 455566678899999999853 3456554 236666433
No 100
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=38.23 E-value=21 Score=30.28 Aligned_cols=56 Identities=16% Similarity=0.398 Sum_probs=39.6
Q ss_pred ccccccCCccccccCCCcccCCCCCceeecC--CCCCCcchhhhHhHHhh--------CCCCCCCcccccc
Q 004118 10 KSIKNVGGQVCQICGDNVGKTVDGNPFVACD--VCAFPVCRPCYEYERKD--------GNQSCPQCKTRYK 70 (773)
Q Consensus 10 k~~~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~--EC~FPVCRpCYeyErke--------G~q~CPqCkt~Yk 70 (773)
-+........| |||.. +.+ ...|+|. .|..=.=-.|.-+..+. ..-.||.|+.+-+
T Consensus 9 d~~~~~~~~~C-iC~~~---~~~-g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 9 DPFQPEIKVRC-VCGNS---LET-DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CSSSCCCCCCC-SSCCC---CCC-SCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred cccCCCCCEEe-ECCCc---CCC-CCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 34444566688 89986 234 4899998 78776666888776543 5789999987544
No 101
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=38.03 E-value=18 Score=32.46 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=16.5
Q ss_pred CCcchhhhHhHHhhCC-CCCCCccccc
Q 004118 44 FPVCRPCYEYERKDGN-QSCPQCKTRY 69 (773)
Q Consensus 44 FPVCRpCYeyErkeG~-q~CPqCkt~Y 69 (773)
-|.|+.||.- .-+. ..|..|+++-
T Consensus 52 ~~yC~~~y~~--~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 52 RKLCRRDYLR--LFGQDGLCASCDKRI 76 (131)
T ss_dssp EEECHHHHHH--HHCCCEECTTTCCEE
T ss_pred EEeecCchhh--hCCCccChhhcCCcc
Confidence 3579999842 2332 3899999876
No 102
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=36.31 E-value=6.9 Score=36.92 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=10.1
Q ss_pred CCCCCCccccccc
Q 004118 59 NQSCPQCKTRYKK 71 (773)
Q Consensus 59 ~q~CPqCkt~Ykr 71 (773)
...||.|+.+--.
T Consensus 107 ~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 107 FLACPKCGSHDFE 119 (139)
T ss_dssp GCSCSSSSCCCEE
T ss_pred CCcCccccCCccE
Confidence 5789999988543
No 103
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=36.23 E-value=11 Score=32.97 Aligned_cols=56 Identities=21% Similarity=0.471 Sum_probs=42.7
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH-------HhhCCCCCCCccccccc
Q 004118 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-------RKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyE-------rkeG~q~CPqCkt~Ykr 71 (773)
.-....|.+|+.. -.++++..+-|..|.-..=-.|+.=- .-+|.=.|++|....++
T Consensus 13 ~e~~~~C~vC~~~--~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 13 MEMGLACVVCRQM--TVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HHHCCSCSSSCCC--CCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCCCcCCCCCCC--CCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 3456799999984 33455678999999888888888632 45899999999877654
No 104
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.25 E-value=22 Score=30.31 Aligned_cols=49 Identities=22% Similarity=0.520 Sum_probs=34.7
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH----HhhCC---CCCCC--ccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE----RKDGN---QSCPQ--CKTRY 69 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyE----rkeG~---q~CPq--Ckt~Y 69 (773)
...|.||-+.+- +..++.-..|+=--|+.|..-- .++|. -.||+ |+..+
T Consensus 5 ~~~C~IC~~~~~----~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 5 SSGCKLCLGEYP----VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp BCCCSSSCCCCB----GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CcCCcccCcccc----cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 458999988753 3345554468999999997543 34664 48999 99874
No 105
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=34.34 E-value=21 Score=29.43 Aligned_cols=42 Identities=33% Similarity=0.720 Sum_probs=30.1
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCC-cchhhhHhHHhhCCCCCCCccccccc
Q 004118 18 QVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FVAC~EC~FP-VCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
..|.||-+..- --++++ |+=- .|+.|..-- ..||-|++++..
T Consensus 25 ~~C~iC~~~~~----~~~~~p---CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNI----AIVFVP---CGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBC----CEEEET---TCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCC----CEEEcC---CCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 47999987632 123554 5777 899997432 899999998864
No 106
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=33.65 E-value=19 Score=29.00 Aligned_cols=54 Identities=19% Similarity=0.557 Sum_probs=35.2
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh----hCCCCCCCcccccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKTRYKKH 72 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErk----eG~q~CPqCkt~Ykr~ 72 (773)
.+..|.+|+..- .+++..|+|..|.-=.=-.|...... ...-.||.|..+..|.
T Consensus 5 e~~~C~~C~~~~---~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~~ 62 (64)
T 1we9_A 5 SSGQCGACGESY---AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGPS 62 (64)
T ss_dssp SCCCCSSSCCCC---CSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCSS
T ss_pred CCCCCCCCCCcc---CCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCCC
Confidence 456899998753 24678999998854433445544322 2668899998765543
No 107
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.42 E-value=17 Score=30.90 Aligned_cols=24 Identities=21% Similarity=0.670 Sum_probs=12.5
Q ss_pred cccccCCCcccCCCCCceeecCCCCC
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAF 44 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~F 44 (773)
+|.-||.++.+... + -+.|.+|++
T Consensus 30 ~C~~CG~~~e~~~~-d-~irCp~CG~ 53 (70)
T 1twf_L 30 ICAECSSKLSLSRT-D-AVRCKDCGH 53 (70)
T ss_dssp ECSSSCCEECCCTT-S-TTCCSSSCC
T ss_pred ECCCCCCcceeCCC-C-CccCCCCCc
Confidence 66666666655522 1 134555554
No 108
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.30 E-value=31 Score=28.59 Aligned_cols=38 Identities=18% Similarity=0.558 Sum_probs=23.9
Q ss_pred ccccCCccccccCCCcc---cCCCCCce----eecCCCCCCcchh
Q 004118 12 IKNVGGQVCQICGDNVG---KTVDGNPF----VACDVCAFPVCRP 49 (773)
Q Consensus 12 ~~~~~~~~C~iCgd~Vg---~~~~Ge~F----VAC~EC~FPVCRp 49 (773)
.......+|..|+..|. +.+.|..+ .-|..|.-++=..
T Consensus 10 ~~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~ 54 (79)
T 2cor_A 10 ARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTAD 54 (79)
T ss_dssp CCCCCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTT
T ss_pred hhccCCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCC
Confidence 34556779999999876 22345443 2577776655444
No 109
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=32.74 E-value=43 Score=29.13 Aligned_cols=56 Identities=18% Similarity=0.377 Sum_probs=39.5
Q ss_pred ccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh-----hCCCCCCCcccccc
Q 004118 12 IKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-----DGNQSCPQCKTRYK 70 (773)
Q Consensus 12 ~~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErk-----eG~q~CPqCkt~Yk 70 (773)
+.......|.+|+...++..+ -.-|.-||.-+|..|-.+... .-..+|-.|-....
T Consensus 15 ~~d~~~~~C~~C~~~F~~~~R---rhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 15 VPDSEAPNCMNCQVKFTFTKR---RHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCGGGCCBCTTTCCBCCSSSC---CEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred cccccCCcCcCCCCcccchhh---CccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 666778899999998876533 256999999999999876532 12356666655544
No 110
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=32.69 E-value=18 Score=38.79 Aligned_cols=43 Identities=28% Similarity=0.716 Sum_probs=31.0
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCC-cchhhhHhHHhhCCCCCCCccccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FP-VCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
...|.||-+..- .-++++ |+-- .|+.|..-- ..||-|++++.+
T Consensus 295 ~~~C~IC~~~~~----~~v~lp---CgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV----SVVFIP---CGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC----CEEEET---TCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCC----ceEEcC---CCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 358999988742 123444 5777 899998532 789999999864
No 111
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=32.64 E-value=22 Score=31.09 Aligned_cols=53 Identities=28% Similarity=0.676 Sum_probs=40.7
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH-HhhCCCCCCCccccc
Q 004118 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKTRY 69 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyE-rkeG~q~CPqCkt~Y 69 (773)
.+...|.||++. -..+++..+-|..|.-.+=..||.-. .-+|.=.||.|...-
T Consensus 23 ~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSS--SSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCC--CCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 456799999964 22456789999999888788998653 457899999997653
No 112
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=32.61 E-value=9.2 Score=44.28 Aligned_cols=45 Identities=9% Similarity=-0.062 Sum_probs=18.1
Q ss_pred cccccC-CCcccC--CCCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccc
Q 004118 19 VCQICG-DNVGKT--VDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (773)
Q Consensus 19 ~C~iCg-d~Vg~~--~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~ 68 (773)
.|..|| ..+-.. ..|..|..| |+||-|+.-.-. +-....||+ +.+
T Consensus 574 ~CP~Cg~g~l~~r~~k~G~~f~gC--s~yp~C~f~~~~--~p~~~~Cp~-~~~ 621 (633)
T 2gai_A 574 FYLKCECGKTRSVKNDEIAVIDDG--KIFLGRKDSESG--SPDGRSVEG-KGN 621 (633)
T ss_dssp EEEECSSSCCEECCTTSBCEEETT--EEEC-----------------------
T ss_pred cCcccCCCcceeecccCCCeEEeC--CCCcCCCCeecC--CccCCcCCC-CCe
Confidence 499998 665443 467789999 566666544321 223478998 644
No 113
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=32.56 E-value=16 Score=43.23 Aligned_cols=59 Identities=31% Similarity=0.746 Sum_probs=42.8
Q ss_pred ccCCccccccCCCcccCCC---CCceeecCCCC--------------------CCcchhhh-HhH----Hhh--CCCCCC
Q 004118 14 NVGGQVCQICGDNVGKTVD---GNPFVACDVCA--------------------FPVCRPCY-EYE----RKD--GNQSCP 63 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~---Ge~FVAC~EC~--------------------FPVCRpCY-eyE----rke--G~q~CP 63 (773)
.....+|.-|=.++---.| +=+|+-|..|| ||.|..|- ||+ ||= ---+||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 3566689999888643332 66899999995 99999996 455 331 124999
Q ss_pred Ccccccccc
Q 004118 64 QCKTRYKKH 72 (773)
Q Consensus 64 qCkt~Ykr~ 72 (773)
.|+=++.-.
T Consensus 183 ~CGP~l~l~ 191 (772)
T 4g9i_A 183 VCGPSYRLY 191 (772)
T ss_dssp TTSCCEEEE
T ss_pred cCCceEEEE
Confidence 999887543
No 114
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.21 E-value=53 Score=27.89 Aligned_cols=50 Identities=22% Similarity=0.696 Sum_probs=35.7
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH-HhhCCCCCCCcccccc
Q 004118 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKTRYK 70 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyE-rkeG~q~CPqCkt~Yk 70 (773)
.....|.||-+.|.. | ..|..|+-..=..|..-= +..++..||.|++...
T Consensus 13 ~~i~~C~IC~~~i~~---g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSS---S---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHccc---C---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 345689999999863 3 467777776667787422 4445689999998874
No 115
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=32.18 E-value=24 Score=30.13 Aligned_cols=52 Identities=23% Similarity=0.599 Sum_probs=31.0
Q ss_pred cCCccccccCCCccc-----CCCCCce----eecCCCC-------------CCcchhhhHhHHhhCCCCCCCccccc
Q 004118 15 VGGQVCQICGDNVGK-----TVDGNPF----VACDVCA-------------FPVCRPCYEYERKDGNQSCPQCKTRY 69 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~-----~~~Ge~F----VAC~EC~-------------FPVCRpCYeyErkeG~q~CPqCkt~Y 69 (773)
+.+..|..|+..|.. .+.|..+ ..|..|. -+.|++||+ ++- ...|.+|+.+-
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~--~~~-~~~C~~C~~~I 76 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTT--RED-SPKCKGCFKAI 76 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHT--TCC-CCBCSSSCCBC
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhh--hhc-CCccccCCCcc
Confidence 345678888887753 2233332 1255662 256888883 222 36888998765
No 116
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=31.95 E-value=4 Score=28.90 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=15.0
Q ss_pred CCCcchhhhHhHHhhCCCCCCCccc
Q 004118 43 AFPVCRPCYEYERKDGNQSCPQCKT 67 (773)
Q Consensus 43 ~FPVCRpCYeyErkeG~q~CPqCkt 67 (773)
.|||||+|+-=-++ ..+...|+|
T Consensus 3 ~~~iC~~CC~cc~~--~~CG~cC~~ 25 (26)
T 1m4f_A 3 HFPICIFCCGCCHR--SKCGMCCKT 25 (26)
T ss_dssp SSCCCEEEECSSSS--SSEEEECCC
T ss_pred cCCccceecccCCC--CCcCCeeCC
Confidence 59999999944333 455555554
No 117
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=31.66 E-value=26 Score=28.38 Aligned_cols=47 Identities=28% Similarity=0.725 Sum_probs=35.1
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHh---HHhhCCCCCCCcccc
Q 004118 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKTR 68 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYey---ErkeG~q~CPqCkt~ 68 (773)
.+...|.+|++ |...+.|..|.-..=..|..- +.-+|.=.||.|..+
T Consensus 7 ~~~~~C~vC~~-------~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKD-------GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCC-------CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCC-------CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45678999996 345789999987777778762 244788899999753
No 118
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=30.65 E-value=25 Score=28.22 Aligned_cols=48 Identities=21% Similarity=0.469 Sum_probs=32.3
Q ss_pred CCccccccCCCcccCCCCCcee--ecCCCCCC-cchhhhHhHHhhCCCCCCCccccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFV--ACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FV--AC~EC~FP-VCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
....|.||-+.--- -.|+ +| |-- .|..|..--.+ .+..||-|+.+.+.
T Consensus 6 ~~~~C~IC~~~~~~----~~~~~~pC---gH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRD----GNIIHGRT---GHLVTCFHCARRLKK-AGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSC----EEEEETTE---EEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCC----eEEEecCC---CCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence 34589999885211 1344 55 554 79999975444 45899999998753
No 119
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.55 E-value=36 Score=29.28 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=32.6
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhhC-----CCCCCC--cccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDG-----NQSCPQ--CKTR 68 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErkeG-----~q~CPq--Ckt~ 68 (773)
.-+|.||.+- +. ++.+.- .|+.-.||.|-+--.+++ ...||. |...
T Consensus 7 ~~~CPI~~~~-~~----dPV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEE-MK----KPVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSB-CS----SEEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCch-hc----CCEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3489999854 33 355542 689999999987655443 468999 8866
No 120
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=30.39 E-value=38 Score=32.59 Aligned_cols=53 Identities=25% Similarity=0.586 Sum_probs=32.9
Q ss_pred cCCccccccCCCccc----CCCCCce----eecCCCCC---------------CcchhhhHhHHhhCCC-CCCCccccc
Q 004118 15 VGGQVCQICGDNVGK----TVDGNPF----VACDVCAF---------------PVCRPCYEYERKDGNQ-SCPQCKTRY 69 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~----~~~Ge~F----VAC~EC~F---------------PVCRpCYeyErkeG~q-~CPqCkt~Y 69 (773)
+...+|..|+..|.- .+.|..+ ..|..|.- |.|+.||. ++-+.+ .|..|+++.
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~--~~~~~~~~C~~C~~~I 79 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI--RLFGNSGACSACGQSI 79 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHH--HHHSCCEECTTTCCEE
T ss_pred CCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccc--cccccCCccccCCCcc
Confidence 455689999888752 2334332 24667743 45888883 334444 799999876
No 121
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=30.28 E-value=28 Score=34.43 Aligned_cols=54 Identities=20% Similarity=0.449 Sum_probs=36.7
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHh-----HHh-----hCCCCCCCccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY-----ERK-----DGNQSCPQCKTRY 69 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYey-----Erk-----eG~q~CPqCkt~Y 69 (773)
+|+.|.||+..-.-++.+...|.|..|..=+=..|-.. |.- +..=.||.|....
T Consensus 1 ~G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp -CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 47899999876544444567999999987665566533 221 1357999997653
No 122
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=29.83 E-value=30 Score=26.64 Aligned_cols=45 Identities=29% Similarity=0.804 Sum_probs=32.1
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhH---hHHhhCCCCCCCccc
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE---YERKDGNQSCPQCKT 67 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYe---yErkeG~q~CPqCkt 67 (773)
.|.+|++. .+++..+.|..|.-..=-.|+. -+.-+|.-.||.|..
T Consensus 2 ~C~vC~~~----~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKK----GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCS----SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCC----CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 59999875 2466789999997655566773 234468888999964
No 123
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.72 E-value=25 Score=36.87 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=35.8
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhh-CCCCCCC--cccccc
Q 004118 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD-GNQSCPQ--CKTRYK 70 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyErke-G~q~CPq--Ckt~Yk 70 (773)
...-+|.||.+-. -++. -...||---||.|.+--.++ |...||. |+.++.
T Consensus 179 ~~el~CPIcl~~f-----~DPV-ts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPY-----EAPL-ISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBC-----SSEE-EESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcc-----cCCe-eeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3444899999865 1233 23478988999999765554 5578999 999874
No 124
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=29.17 E-value=36 Score=28.24 Aligned_cols=45 Identities=27% Similarity=0.609 Sum_probs=35.1
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH---HhhCCCCCCCccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE---RKDGNQSCPQCKT 67 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyE---rkeG~q~CPqCkt 67 (773)
.+..|.||++. | ..+-|..|.-..=-.|+.-- .-+|.=.||.|..
T Consensus 11 ~~~~C~vC~~~------~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCGDG------T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTSCC------T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCcCCCCCC------C-eEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 45679999852 3 47889999988889998543 3478899999975
No 125
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=28.61 E-value=14 Score=34.04 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=0.4
Q ss_pred CccccccCCCcccCC-----------CCCceeecCCCCCCcchhhhHhHHhhCCCCCCCcccccc
Q 004118 17 GQVCQICGDNVGKTV-----------DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~-----------~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Yk 70 (773)
...|.||-+++.... .++.-+.-..|+---|+.|-.-=. ..+..||-|+.++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl-~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHH-HcCCcCCCCCCeee
Confidence 468999999876421 223333334678888999974322 33789999999864
No 126
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.35 E-value=5.7 Score=33.62 Aligned_cols=41 Identities=17% Similarity=0.561 Sum_probs=31.0
Q ss_pred eeecCCCCCCcchhhhHhHHhhCCCCCCCccccccccCCCCcccCC
Q 004118 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGD 81 (773)
Q Consensus 36 FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Ykr~kGs~rv~gd 81 (773)
..+| |+|+-=.+|.+.+|.-.|+.|+..|--..|-|..--|
T Consensus 8 iL~C-----P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (68)
T 2hf1_A 8 ILVC-----PLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLES 48 (68)
T ss_dssp ECBC-----TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCGG
T ss_pred heEC-----CCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeChh
Confidence 5667 4555445566677888999999999988888877655
No 127
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.86 E-value=54 Score=26.18 Aligned_cols=28 Identities=29% Similarity=0.675 Sum_probs=16.1
Q ss_pred CCccccccCCCccc-----CCCCCce----eecCCCC
Q 004118 16 GGQVCQICGDNVGK-----TVDGNPF----VACDVCA 43 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~-----~~~Ge~F----VAC~EC~ 43 (773)
.+..|..|+..|.- .+.|..| ..|..|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 40 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCR 40 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSC
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccC
Confidence 45678888877653 2445544 3355663
No 128
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=27.70 E-value=64 Score=32.12 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=23.1
Q ss_pred CCEEEEecCCCCCCcHHHHHHHHHhhcC
Q 004118 551 GPFLLNLDCDHYINNSKALREAMCFMMD 578 (773)
Q Consensus 551 gpfIlnlDcDh~~nnp~~Lr~amcfflD 578 (773)
.++|+++|||+=.-.++.+++.+-.+.+
T Consensus 100 ~d~Vlv~~~d~Pli~~~~i~~li~~~~~ 127 (231)
T 3q80_A 100 PEFVLVHDAARALTPPALVARVVEALRD 127 (231)
T ss_dssp CSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence 5899999999865678999998876654
No 129
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=27.38 E-value=47 Score=29.52 Aligned_cols=24 Identities=33% Similarity=0.962 Sum_probs=17.1
Q ss_pred CCCcchhhhHhHHhhCCCCCCCccccc
Q 004118 43 AFPVCRPCYEYERKDGNQSCPQCKTRY 69 (773)
Q Consensus 43 ~FPVCRpCYeyErkeG~q~CPqCkt~Y 69 (773)
+-|.|+.||. ++- ...|..|+++-
T Consensus 50 g~~yC~~cy~--~~~-~~~C~~C~~~I 73 (126)
T 2xqn_T 50 DKPVCKPCYV--KNH-AVVCQGCHNAI 73 (126)
T ss_dssp TEEEEHHHHH--HHS-CCBCTTTCSBC
T ss_pred CEEechHHhC--cCc-CccCcccCCcC
Confidence 3467999994 223 36799999876
No 130
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=26.00 E-value=42 Score=28.19 Aligned_cols=43 Identities=28% Similarity=0.797 Sum_probs=30.1
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCC-cchhhhHhHHhhCCCCCCCccccccc
Q 004118 17 GQVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FP-VCRpCYeyErkeG~q~CPqCkt~Ykr 71 (773)
...|.||-+..- --+|++| +-- .|+.|..- -+.||-|+++...
T Consensus 18 ~~~C~IC~~~~~----~~v~~pC---gH~~~C~~C~~~-----~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI----NSTFCPC---GHTVCCESCAAQ-----LQSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC----CEEEETT---CBCCBCHHHHTT-----CSBCTTTCCBCCE
T ss_pred CCEeEEeCcccC----cEEEECC---CCHHHHHHHHHh-----cCcCCCCCchhhC
Confidence 347999987632 1246665 555 79999852 3599999998864
No 131
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=25.90 E-value=21 Score=32.75 Aligned_cols=26 Identities=27% Similarity=0.720 Sum_probs=18.1
Q ss_pred eecCCCCCCcchhhhHhHHhhCCCCCCCcccc
Q 004118 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (773)
Q Consensus 37 VAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~ 68 (773)
..|..|||-.+ ++-.....||.||..
T Consensus 68 ~~C~~CG~~F~------~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 68 AQCRKCGFVFK------AEINIPSRCPKCKSE 93 (105)
T ss_dssp CBBTTTCCBCC------CCSSCCSSCSSSCCC
T ss_pred cChhhCcCeec------ccCCCCCCCcCCCCC
Confidence 35888888861 233455789999864
No 132
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=25.60 E-value=20 Score=28.83 Aligned_cols=50 Identities=24% Similarity=0.703 Sum_probs=36.1
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhH--hH-HhhCCCCCCCccccccc
Q 004118 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE--YE-RKDGNQSCPQCKTRYKK 71 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYe--yE-rkeG~q~CPqCkt~Ykr 71 (773)
.+...|.+|++. | ..+.|..|.-..=..|.. .. .-+|.-.||.|.....+
T Consensus 3 ~~~~~C~vC~~~------g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 3 IHEDFCSVCRKS------G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCCSSCTTTCCC------S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCCcCCCCC------C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 456789999973 3 578899997665667876 22 34688899999776543
No 133
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=25.29 E-value=47 Score=26.91 Aligned_cols=14 Identities=29% Similarity=0.838 Sum_probs=7.5
Q ss_pred hhCCCCCCCccccc
Q 004118 56 KDGNQSCPQCKTRY 69 (773)
Q Consensus 56 keG~q~CPqCkt~Y 69 (773)
+.|..+|..|+.-|
T Consensus 27 ~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 27 RAGDMICPECGLVV 40 (58)
T ss_dssp SSCCEECTTTCCEE
T ss_pred CCCeEEeCCCCCEE
Confidence 34445555565555
No 134
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.41 E-value=36 Score=27.96 Aligned_cols=30 Identities=17% Similarity=0.412 Sum_probs=19.1
Q ss_pred cCCccccccCCCcc-----cCCCCCce----eecCCCCC
Q 004118 15 VGGQVCQICGDNVG-----KTVDGNPF----VACDVCAF 44 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg-----~~~~Ge~F----VAC~EC~F 44 (773)
..+.+|..|+..|. +.+.|..| ..|..|.=
T Consensus 13 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~ 51 (82)
T 1x63_A 13 EDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQ 51 (82)
T ss_dssp CCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCC
T ss_pred ccCCcCccCCcccccCceEEEECccccccccCchhhCCC
Confidence 34579999999886 33456554 24666643
No 135
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=23.85 E-value=10 Score=32.09 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=24.6
Q ss_pred hHhHHhhCCCCCCCccccccccCCCCcccCC
Q 004118 51 YEYERKDGNQSCPQCKTRYKKHKGSPAILGD 81 (773)
Q Consensus 51 YeyErkeG~q~CPqCkt~Ykr~kGs~rv~gd 81 (773)
.+|.+.+|.-.|+.|+..|--..|-|..--|
T Consensus 18 L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (68)
T 2jr6_A 18 LEYHQDKQELWSRQAKLAYPIKDGIPYMLEN 48 (68)
T ss_dssp CEEETTTTEEEETTTTEEEEEETTEECCCTT
T ss_pred CeEeCCCCEEEcCCCCcEecCCCCeeeeChh
Confidence 3455566888999999999988888877766
No 136
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.50 E-value=14 Score=33.53 Aligned_cols=31 Identities=13% Similarity=0.412 Sum_probs=21.0
Q ss_pred ceeecCCCCCCcchhhhHhHHhhCCC-CCCCcccccccc
Q 004118 35 PFVACDVCAFPVCRPCYEYERKDGNQ-SCPQCKTRYKKH 72 (773)
Q Consensus 35 ~FVAC~EC~FPVCRpCYeyErkeG~q-~CPqCkt~Ykr~ 72 (773)
...-|.+|++ +++..+-.. .||.|+.+-.+.
T Consensus 72 ~~~~C~~CG~-------~~e~~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 72 VELECKDCSH-------VFKPNALDYGVCEKCHSKNVII 103 (119)
T ss_dssp CEEECSSSSC-------EECSCCSTTCCCSSSSSCCCEE
T ss_pred ceEEcCCCCC-------EEeCCCCCCCcCccccCCCcEE
Confidence 4566777774 344455566 899999986554
No 137
>2ksl_A U1-agatoxin-TA1A; insecticidal toxin, spider toxin, neurotoxin, crustacean hyperglycemic hormone, MOLT-inhibiting hormone; NMR {Tegenaria agrestis}
Probab=23.40 E-value=2.4 Score=33.20 Aligned_cols=25 Identities=32% Similarity=0.731 Sum_probs=18.2
Q ss_pred CccccccCCCcccCC----CCCceeecCC
Q 004118 17 GQVCQICGDNVGKTV----DGNPFVACDV 41 (773)
Q Consensus 17 ~~~C~iCgd~Vg~~~----~Ge~FVAC~E 41 (773)
+.+|.-|||+|..-+ +.+++.||||
T Consensus 20 snvcngcgdqvaaceaecfrndvytache 48 (51)
T 2ksl_A 20 SNVCNGCGDQVAACEAECFRNDVYTACHE 48 (51)
T ss_dssp HHHHHHHCSCHHHHHHTTSCSHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHhhhHHHHHHh
Confidence 458999999986542 5667777765
No 138
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=23.31 E-value=28 Score=30.58 Aligned_cols=27 Identities=33% Similarity=0.865 Sum_probs=16.5
Q ss_pred cccccCCCcccCC----CCCceeecCCCCCCc
Q 004118 19 VCQICGDNVGKTV----DGNPFVACDVCAFPV 46 (773)
Q Consensus 19 ~C~iCgd~Vg~~~----~Ge~FVAC~EC~FPV 46 (773)
.|+ |||..-+++ +|+..|.|..|-.-|
T Consensus 32 ~Cr-CGd~F~it~edL~~ge~iv~C~sCSL~I 62 (83)
T 1wge_A 32 PCP-CGDNFAITKEDLENGEDVATCPSCSLII 62 (83)
T ss_dssp CCS-SSSCEEEEHHHHHTTCCEEECTTTCCEE
T ss_pred eCC-CCCEEEECHHHHhCCCEEEECCCCceEE
Confidence 465 777655542 566667776666544
No 139
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=23.17 E-value=56 Score=33.10 Aligned_cols=80 Identities=18% Similarity=0.081 Sum_probs=44.7
Q ss_pred CCCCCEEEEecCC---CCCCcHHHHHHHHHhhcCCCCCcceEEEccCccccCCCCcccchhhHHHHHHHHhhhccCCCcc
Q 004118 548 LTNGPFLLNLDCD---HYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGP 624 (773)
Q Consensus 548 ltngpfIlnlDcD---h~~nnp~~Lr~amcfflDp~~g~~vafVQtPQrF~N~d~~Dry~n~~~vFfdvi~~GlDG~qgp 624 (773)
.+.+++++.+||| +- -+|+.+.+.+-. |.+|..---|.+=.+ ..-..++ ++.....+ ...
T Consensus 51 ~~~~dhllfIDAD~~~I~-FdPe~V~rLl~~------g~DVV~GsYp~K~~~--~~s~~a~------~y~~~i~~--~~V 113 (203)
T 2c0n_A 51 MKDYDTLAFLDEDVVPIE-IDFQKVEAKFNE------GYDVVCGYYYLKTLR--GYSVYRK------DWEKEIFD--GEV 113 (203)
T ss_dssp CTTCCEEEEECTTEEEEE-CCHHHHHHHHHH------TCSEEEEECBCTTSS--SBSEESS------SBCSSCCC--EEC
T ss_pred cCCCCEEEEEeCCCCccc-cCHHHHHHHHhC------CCCEEEEEeeccCCC--ccchHHH------HHHHhccC--cee
Confidence 3678999999999 74 578888877722 233333222222111 0000111 01100111 135
Q ss_pred ccccchh-hhhHhhhcCCCCC
Q 004118 625 VYVGTGC-VFNRTALYGYEPP 644 (773)
Q Consensus 625 ~y~GTgc-v~RR~ALyG~~Pp 644 (773)
.++|||+ ++||++|..+..|
T Consensus 114 ~d~~tGF~lIkR~V~e~L~~p 134 (203)
T 2c0n_A 114 NGCGLGFTFIKREFLEKIKRP 134 (203)
T ss_dssp SEECSSEEEEEHHHHTTSCSS
T ss_pred eeccccEEEEhHHHHHHHhhh
Confidence 6899998 5699999988776
No 140
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.16 E-value=68 Score=25.64 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=10.0
Q ss_pred CCccccccCCCccc
Q 004118 16 GGQVCQICGDNVGK 29 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~ 29 (773)
....|..|+..|.-
T Consensus 4 ~~~~C~~C~~~I~~ 17 (72)
T 1x4l_A 4 GSSGCAGCTNPISG 17 (72)
T ss_dssp CSCSBTTTTBCCCC
T ss_pred CCCCCcCCCccccC
Confidence 45678888887763
No 141
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.10 E-value=26 Score=28.19 Aligned_cols=15 Identities=27% Similarity=1.052 Sum_probs=12.9
Q ss_pred CCCCCCCcccccccc
Q 004118 58 GNQSCPQCKTRYKKH 72 (773)
Q Consensus 58 G~q~CPqCkt~Ykr~ 72 (773)
|...||+|+..|+..
T Consensus 11 ~~~~CPrCn~~f~~~ 25 (49)
T 2e72_A 11 GRKICPRCNAQFRVT 25 (49)
T ss_dssp SCCCCTTTCCCCSSH
T ss_pred CceeCCcccccccch
Confidence 678999999999754
No 142
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=22.28 E-value=65 Score=29.00 Aligned_cols=49 Identities=22% Similarity=0.515 Sum_probs=35.6
Q ss_pred ccccccCCCc---ccCCCCCceeecCCCCCCcchhhhHh------HHhhCCCCCCCcc
Q 004118 18 QVCQICGDNV---GKTVDGNPFVACDVCAFPVCRPCYEY------ERKDGNQSCPQCK 66 (773)
Q Consensus 18 ~~C~iCgd~V---g~~~~Ge~FVAC~EC~FPVCRpCYey------ErkeG~q~CPqCk 66 (773)
.+|.+|.+.- ..+.+++.++.|..|.-..=..|.+. ..+++.=.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 4799996653 23446788999999986655567654 3568888899986
No 143
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=22.21 E-value=1e+02 Score=25.82 Aligned_cols=60 Identities=22% Similarity=0.511 Sum_probs=37.9
Q ss_pred CccccccCCccccccCCCcccCCCCCceeecCC--CCC-CcchhhhHhHHh-hCCCCCCCccccccccCC
Q 004118 9 VKSIKNVGGQVCQICGDNVGKTVDGNPFVACDV--CAF-PVCRPCYEYERK-DGNQSCPQCKTRYKKHKG 74 (773)
Q Consensus 9 ~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FVAC~E--C~F-PVCRpCYeyErk-eG~q~CPqCkt~Ykr~kG 74 (773)
.-+........| +|+.. .+| ..|+|.. |.. -.=-.|...... .|.-.||.|...-++.+|
T Consensus 8 ~~~~d~~~~~~C-~C~~~----~~g-~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~~k~~~ 71 (71)
T 1wen_A 8 DMPVDPNEPTYC-LCHQV----SYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGPSSG 71 (71)
T ss_dssp CCCCCTTSCCCS-TTCCC----SCS-SEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCSSSCCC
T ss_pred ccccCCCCCCEE-ECCCC----CCC-CEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccccccCC
Confidence 344445566788 89874 236 4899998 642 222355554432 588999999877666544
No 144
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=22.08 E-value=51 Score=29.22 Aligned_cols=50 Identities=24% Similarity=0.537 Sum_probs=35.8
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHH---hhCCCCCCCccc
Q 004118 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER---KDGNQSCPQCKT 67 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyEr---keG~q~CPqCkt 67 (773)
..+..+|.+|++.- +.+.++.|..|.-..=..|..... +++.-.||.|++
T Consensus 4 ~~~~~~C~~C~~~g----~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~ 56 (111)
T 2ysm_A 4 GSSGANCAVCDSPG----DLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKV 56 (111)
T ss_dssp CCCCSCBTTTCCCC----CTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCC
T ss_pred CCCCCCCcCCCCCC----CCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCc
Confidence 34667999999861 223479999998776667776553 357788999874
No 145
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=21.95 E-value=41 Score=27.91 Aligned_cols=51 Identities=24% Similarity=0.433 Sum_probs=32.1
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHH---hhCCCCCCCcccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER---KDGNQSCPQCKTRYK 70 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyEr---keG~q~CPqCkt~Yk 70 (773)
....| +|+.. ..+|+..|+|..|.-=.=-.|..+.. ....-.||.|+.+-+
T Consensus 15 ~~~~C-~C~~~---~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 15 WKVDC-KCGTK---DDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SEECC-TTCCC---SCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred cceEe-eCCCc---cCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 33478 79874 35688999998874322234544432 246688999986543
No 146
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=21.71 E-value=22 Score=31.72 Aligned_cols=27 Identities=33% Similarity=0.864 Sum_probs=16.5
Q ss_pred cccccCCCcccCC----CCCceeecCCCCCCc
Q 004118 19 VCQICGDNVGKTV----DGNPFVACDVCAFPV 46 (773)
Q Consensus 19 ~C~iCgd~Vg~~~----~Ge~FVAC~EC~FPV 46 (773)
.|+ |||..-+++ +|+..|.|..|..-|
T Consensus 25 pCr-CGd~F~IteedLe~ge~iv~C~sCSL~I 55 (89)
T 2jr7_A 25 PCP-CGDNFSITKEDLENGEDVATCPSCSLII 55 (89)
T ss_dssp ECT-TSSEEEEEHHHHHHTCCEEECTTTCCEE
T ss_pred cCC-CCCEEEECHHHHhCCCEEEECCCCccEE
Confidence 466 777655542 566666666666555
No 147
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=21.30 E-value=76 Score=29.86 Aligned_cols=50 Identities=16% Similarity=0.448 Sum_probs=29.0
Q ss_pred CccccccCCCccc----CCCCCce----eecCCCC------------CCcchhhhHhHHhhCCCCCCCccccc
Q 004118 17 GQVCQICGDNVGK----TVDGNPF----VACDVCA------------FPVCRPCYEYERKDGNQSCPQCKTRY 69 (773)
Q Consensus 17 ~~~C~iCgd~Vg~----~~~Ge~F----VAC~EC~------------FPVCRpCYeyErkeG~q~CPqCkt~Y 69 (773)
..+|..|+..|.- .+.|..+ ..|.+|. -+.|+.||.- +-+ ..|..|+.+-
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~--~f~-~~C~~C~~~I 75 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFK--RFG-TKCAACQLGI 75 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHHH--HHS-CBCTTTCCBC
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCcccCCeeeecccccc--ccc-cccccccccc
Confidence 4578888887642 2334332 2355664 3568888842 223 5788887654
No 148
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.27 E-value=67 Score=26.76 Aligned_cols=52 Identities=19% Similarity=0.480 Sum_probs=34.5
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHH--------hhCCCCCCCcccccc
Q 004118 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER--------KDGNQSCPQCKTRYK 70 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYeyEr--------keG~q~CPqCkt~Yk 70 (773)
..+...| +|+.. .+|+..|+|..|.-=.=-.|..... ....-.||.|.....
T Consensus 13 d~~~~~C-~C~~~----~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 13 DPNALYC-ICRQP----HNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CTTCCCS-TTCCC----CCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCCCEE-ECCCc----cCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 3446678 89865 2477899998885443345554332 346789999987654
No 149
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=21.18 E-value=25 Score=41.01 Aligned_cols=57 Identities=28% Similarity=0.771 Sum_probs=42.4
Q ss_pred ccCCccccccCCCcccCCC---CCceeecCCCC--------------------CCcchhhh-HhH----Hhh--CCCCCC
Q 004118 14 NVGGQVCQICGDNVGKTVD---GNPFVACDVCA--------------------FPVCRPCY-EYE----RKD--GNQSCP 63 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~---Ge~FVAC~EC~--------------------FPVCRpCY-eyE----rke--G~q~CP 63 (773)
.....+|.-|=.++---.| +=+|+-|-.|| ||.|..|. ||+ ||= ---+||
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp 93 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACP 93 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCc
Confidence 4566799999988753222 56899999994 99999996 566 442 225999
Q ss_pred Ccccccc
Q 004118 64 QCKTRYK 70 (773)
Q Consensus 64 qCkt~Yk 70 (773)
.|+=++.
T Consensus 94 ~CGP~l~ 100 (657)
T 3ttc_A 94 ECGPYLE 100 (657)
T ss_dssp TTSCCEE
T ss_pred ccCccce
Confidence 9998883
No 150
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.13 E-value=38 Score=27.41 Aligned_cols=32 Identities=16% Similarity=0.544 Sum_probs=20.0
Q ss_pred ccCCccccccCCCccc-----CCCCCce----eecCCCCCC
Q 004118 14 NVGGQVCQICGDNVGK-----TVDGNPF----VACDVCAFP 45 (773)
Q Consensus 14 ~~~~~~C~iCgd~Vg~-----~~~Ge~F----VAC~EC~FP 45 (773)
.+.+..|..|+..|.. .+.|..+ ..|..|.-+
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~ 48 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQ 48 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCC
T ss_pred CCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCC
Confidence 3567799999999852 2455443 236666444
No 151
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=20.68 E-value=38 Score=33.31 Aligned_cols=47 Identities=19% Similarity=0.524 Sum_probs=35.5
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHh---HHhhCCCCCCCccccc
Q 004118 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKTRY 69 (773)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYey---ErkeG~q~CPqCkt~Y 69 (773)
+...|.+|++. | ..+-|..|.-..--.|..- +.-+|.=.||.|...-
T Consensus 6 ~~~~C~~C~~~------g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG------G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC------E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC------C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 55689999954 3 4788999988777888732 2447889999998654
No 152
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=20.62 E-value=25 Score=30.93 Aligned_cols=27 Identities=26% Similarity=0.775 Sum_probs=17.1
Q ss_pred cccccCCCcccC----CCCCceeecCCCCCCc
Q 004118 19 VCQICGDNVGKT----VDGNPFVACDVCAFPV 46 (773)
Q Consensus 19 ~C~iCgd~Vg~~----~~Ge~FVAC~EC~FPV 46 (773)
.|+ |||..-++ ++|+..|.|..|..-|
T Consensus 25 pCr-CGd~F~it~edL~~ge~iv~C~sCSL~I 55 (83)
T 1yop_A 25 PCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMI 55 (83)
T ss_dssp EET-TTEEEEEEHHHHHTTCCEEECSSSCCEE
T ss_pred eCC-CCCeEEECHHHHhCCCEEEECCCCccEE
Confidence 466 77765554 2677777776666544
No 153
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.23 E-value=52 Score=26.65 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=10.9
Q ss_pred cCCccccccCCCcc
Q 004118 15 VGGQVCQICGDNVG 28 (773)
Q Consensus 15 ~~~~~C~iCgd~Vg 28 (773)
+.+..|..|+..|.
T Consensus 13 ~~~~~C~~C~~~I~ 26 (77)
T 2egq_A 13 FVAKKCAGCKNPIT 26 (77)
T ss_dssp CCCCCCSSSCCCCC
T ss_pred hhCccCcccCCccc
Confidence 34578999999877
No 154
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.05 E-value=18 Score=35.55 Aligned_cols=27 Identities=22% Similarity=0.548 Sum_probs=16.6
Q ss_pred eeecCCCCCCcchhhhHhHHhhCCCCCCCccccc
Q 004118 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (773)
Q Consensus 36 FVAC~EC~FPVCRpCYeyErkeG~q~CPqCkt~Y 69 (773)
.--|..|||- |+-.+--..||.|+.+=
T Consensus 155 ~~~C~~CG~~-------~~g~~~p~~CP~C~~~k 181 (191)
T 1lko_A 155 KWRCRNCGYV-------HEGTGAPELCPACAHPK 181 (191)
T ss_dssp EEEETTTCCE-------EEEEECCSBCTTTCCBG
T ss_pred eEEECCCCCE-------eeCCCCCCCCCCCcCCH
Confidence 3457777764 33223334999999873
No 155
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=20.04 E-value=53 Score=29.44 Aligned_cols=46 Identities=22% Similarity=0.582 Sum_probs=20.4
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhH---hHHhhCCCCCCCccc
Q 004118 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE---YERKDGNQSCPQCKT 67 (773)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FVAC~EC~FPVCRpCYe---yErkeG~q~CPqCkt 67 (773)
+|++|++. ..+.+..+.|..|.-..=-.|.. -+.-+|.-.||.|+.
T Consensus 63 ~C~vC~~~---~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQ---GKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCC---CCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCc---CCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 45555543 12233455555554444444441 112245555555543
Done!