BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004119
(773 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 487 bits (1253), Expect = e-137, Method: Compositional matrix adjust.
Identities = 262/554 (47%), Positives = 363/554 (65%), Gaps = 29/554 (5%)
Query: 237 KEVLDKHLEVTGGN--VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP 294
++++D+ L +G + V TRFPPEPNGYLHIGHAK++ ++FG+A++ G C LR+DDTNP
Sbjct: 12 RQIIDEDL-ASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNP 70
Query: 295 EAEKKEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 353
E EY++ I+ V+W+G+ + Y+SDYF +L+ A+ELI +G AYVD TPE+I+
Sbjct: 71 VKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIR 130
Query: 354 EYR----EKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 409
EYR + NSP+RDR + E+L LFE MR G EEGKA LR K DM + M D +
Sbjct: 131 EYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVL 190
Query: 410 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL- 468
YRIKF H G+KWCIYP YD+ HCI D++E ITHSLCTLEF+ R Y W+L + +
Sbjct: 191 YRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQNNRRLYDWVLDNITIP 250
Query: 469 YQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFV 528
P +E+SRLN+ TVMSKRKLN LVT+K+V+GWDDP + T++GLRRRG T+ SI F
Sbjct: 251 VHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFC 310
Query: 529 QGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRW 587
+ IG+++ D+ I + LE IRE+LN+ APR M V++P+K+VI N + G ++ +
Sbjct: 311 KRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTM----- 365
Query: 588 PDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILS 647
P+ +VPFS ++I+ +DFR + +K Y L GK V LR A+ IK E +
Sbjct: 366 PNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEK 424
Query: 648 DDKETILHIRAEY-------DPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSEN 700
D + I I Y DP+ K KGV+HWV+ + L VE+RL+++LF+ N
Sbjct: 425 DAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVS----AAHALPVEIRLYDRLFSVPN 480
Query: 701 PAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFN 759
P DD+LS +NP+S +VI + +AEPSL A G FQFER GYF +D + ST EK VFN
Sbjct: 481 PGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFN 539
Query: 760 RTVTLKDSFPKGGK 773
RTV L+D++ K G+
Sbjct: 540 RTVGLRDTWAKVGE 553
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 486 bits (1251), Expect = e-137, Method: Compositional matrix adjust.
Identities = 262/554 (47%), Positives = 363/554 (65%), Gaps = 29/554 (5%)
Query: 237 KEVLDKHLEVTGGN--VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP 294
++++D+ L +G + V TRFPPEPNGYLHIGHAK++ ++FG+A++ G C LR+DDTNP
Sbjct: 12 RQIIDEDL-ASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNP 70
Query: 295 EAEKKEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 353
E EY++ I+ V+W+G+ + Y+SDYF +L+ A+ELI +G AYVD TPE+I+
Sbjct: 71 VKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIR 130
Query: 354 EYR----EKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 409
EYR + NSP+RDR + E+L LFE MR G EEGKA LR K DM + M D +
Sbjct: 131 EYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVL 190
Query: 410 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL- 468
YRIKF H G+KWCIYP YD+ HCI D++E ITHSLCTLEF+ R Y W+L + +
Sbjct: 191 YRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQGNRRLYDWVLDNITIP 250
Query: 469 YQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFV 528
P +E+SRLN+ TVMSKRKLN LVT+K+V+GWDDP + T++GLRRRG T+ SI F
Sbjct: 251 VHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFC 310
Query: 529 QGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRW 587
+ IG+++ D+ I + LE IRE+LN+ APR M V++P+K+VI N + G ++ +
Sbjct: 311 KRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTM----- 365
Query: 588 PDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILS 647
P+ +VPFS ++I+ +DFR + +K Y L GK V LR A+ IK E +
Sbjct: 366 PNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEK 424
Query: 648 DDKETILHIRAEY-------DPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSEN 700
D + I I Y DP+ K KGV+HWV+ + L VE+RL+++LF+ N
Sbjct: 425 DAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVS----AAHALPVEIRLYDRLFSVPN 480
Query: 701 PAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFN 759
P DD+LS +NP+S +VI + +AEPSL A G FQFER GYF +D + ST EK VFN
Sbjct: 481 PGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFN 539
Query: 760 RTVTLKDSFPKGGK 773
RTV L+D++ K G+
Sbjct: 540 RTVGLRDTWAKVGE 553
>pdb|1GSG|P Chain P, Structure Of E.Coli Glutaminyl-Trna Synthetase Complexed
With Trnagln And Atp At 2.8 Angstroms Resolution
pdb|1GTR|A Chain A, Structural Basis Of Anticodon Loop Recognition By
Glutaminyl-Trna Synthetase
pdb|1GTS|A Chain A, Structural Basis For Transfer Rna Aminoaceylation By
Escherichia Coli Glutaminyl-Trna Synthetase
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1ZJW|A Chain A, Glutaminyl-trna Synthetase Complexed To Glutamine And
2'deoxy A76 Glutamine Trna
Length = 553
Score = 486 bits (1251), Expect = e-137, Method: Compositional matrix adjust.
Identities = 262/554 (47%), Positives = 363/554 (65%), Gaps = 29/554 (5%)
Query: 237 KEVLDKHLEVTGGN--VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP 294
++++D+ L +G + V TRFPPEPNGYLHIGHAK++ ++FG+A++ G C LR+DDTNP
Sbjct: 12 RQIIDEDL-ASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNP 70
Query: 295 EAEKKEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 353
E EY++ I+ V+W+G+ + Y+SDYF +L+ A+ELI +G AYVD TPE+I+
Sbjct: 71 VKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIR 130
Query: 354 EYR----EKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 409
EYR + NSP+RDR + E+L LFE MR G EEGKA LR K DM + M D +
Sbjct: 131 EYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVL 190
Query: 410 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL- 468
YRIKF H G+KWCIYP YD+ HCI D++E ITHSLCTLEF+ R Y W+L + +
Sbjct: 191 YRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIP 250
Query: 469 YQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFV 528
P +E+SRLN+ TVMSKRKLN LVT+K+V+GWDDP + T++GLRRRG T+ SI F
Sbjct: 251 VHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFC 310
Query: 529 QGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRW 587
+ IG+++ D+ I + LE IRE+LN+ APR M V++P+K+VI N + G ++ +
Sbjct: 311 KRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTM----- 365
Query: 588 PDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILS 647
P+ +VPFS ++I+ +DFR + +K Y L GK V LR A+ IK E +
Sbjct: 366 PNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEK 424
Query: 648 DDKETILHIRAEY-------DPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSEN 700
D + I I Y DP+ K KGV+HWV+ + L VE+RL+++LF+ N
Sbjct: 425 DAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVS----AAHALPVEIRLYDRLFSVPN 480
Query: 701 PAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFN 759
P DD+LS +NP+S +VI + +AEPSL A G FQFER GYF +D + ST EK VFN
Sbjct: 481 PGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFN 539
Query: 760 RTVTLKDSFPKGGK 773
RTV L+D++ K G+
Sbjct: 540 RTVGLRDTWAKVGE 553
>pdb|1O0B|A Chain A, Crystal Structure Of L-Glutamine And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
pdb|1O0C|A Chain A, Crystal Structure Of L-glutamate And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
Length = 554
Score = 486 bits (1251), Expect = e-137, Method: Compositional matrix adjust.
Identities = 262/554 (47%), Positives = 363/554 (65%), Gaps = 29/554 (5%)
Query: 237 KEVLDKHLEVTGGN--VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP 294
++++D+ L +G + V TRFPPEPNGYLHIGHAK++ ++FG+A++ G C LR+DDTNP
Sbjct: 13 RQIIDEDL-ASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNP 71
Query: 295 EAEKKEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 353
E EY++ I+ V+W+G+ + Y+SDYF +L+ A+ELI +G AYVD TPE+I+
Sbjct: 72 VKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIR 131
Query: 354 EYR----EKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 409
EYR + NSP+RDR + E+L LFE MR G EEGKA LR K DM + M D +
Sbjct: 132 EYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVL 191
Query: 410 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL- 468
YRIKF H G+KWCIYP YD+ HCI D++E ITHSLCTLEF+ R Y W+L + +
Sbjct: 192 YRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIP 251
Query: 469 YQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFV 528
P +E+SRLN+ TVMSKRKLN LVT+K+V+GWDDP + T++GLRRRG T+ SI F
Sbjct: 252 VHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFC 311
Query: 529 QGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRW 587
+ IG+++ D+ I + LE IRE+LN+ APR M V++P+K+VI N + G ++ +
Sbjct: 312 KRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTM----- 366
Query: 588 PDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILS 647
P+ +VPFS ++I+ +DFR + +K Y L GK V LR A+ IK E +
Sbjct: 367 PNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEK 425
Query: 648 DDKETILHIRAEY-------DPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSEN 700
D + I I Y DP+ K KGV+HWV+ + L VE+RL+++LF+ N
Sbjct: 426 DAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVS----AAHALPVEIRLYDRLFSVPN 481
Query: 701 PAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFN 759
P DD+LS +NP+S +VI + +AEPSL A G FQFER GYF +D + ST EK VFN
Sbjct: 482 PGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFN 540
Query: 760 RTVTLKDSFPKGGK 773
RTV L+D++ K G+
Sbjct: 541 RTVGLRDTWAKVGE 554
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 484 bits (1247), Expect = e-137, Method: Compositional matrix adjust.
Identities = 261/554 (47%), Positives = 362/554 (65%), Gaps = 29/554 (5%)
Query: 237 KEVLDKHLEVTGGN--VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP 294
++++D+ L +G + V TRFPPEPNGYLHIGHAK++ ++FG+A++ G C LR+DDTNP
Sbjct: 12 RQIIDEDL-ASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNP 70
Query: 295 EAEKKEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 353
E EY++ I+ V+W+G+ + Y+SDYF +L+ A+ELI +G AYVD TPE+ +
Sbjct: 71 VKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQTR 130
Query: 354 EYR----EKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 409
EYR + NSP+RDR + E+L LFE MR G EEGKA LR K DM + M D +
Sbjct: 131 EYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVL 190
Query: 410 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL- 468
YRIKF H G+KWCIYP YD+ HCI D++E ITHSLCTLEF+ R Y W+L + +
Sbjct: 191 YRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIP 250
Query: 469 YQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFV 528
P +E+SRLN+ TVMSKRKLN LVT+K+V+GWDDP + T++GLRRRG T+ SI F
Sbjct: 251 VHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFC 310
Query: 529 QGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRW 587
+ IG+++ D+ I + LE IRE+LN+ APR M V++P+K+VI N + G ++ +
Sbjct: 311 KRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTM----- 365
Query: 588 PDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILS 647
P+ +VPFS ++I+ +DFR + +K Y L GK V LR A+ IK E +
Sbjct: 366 PNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEK 424
Query: 648 DDKETILHIRAEY-------DPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSEN 700
D + I I Y DP+ K KGV+HWV+ + L VE+RL+++LF+ N
Sbjct: 425 DAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVS----AAHALPVEIRLYDRLFSVPN 480
Query: 701 PAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFN 759
P DD+LS +NP+S +VI + +AEPSL A G FQFER GYF +D + ST EK VFN
Sbjct: 481 PGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFN 539
Query: 760 RTVTLKDSFPKGGK 773
RTV L+D++ K G+
Sbjct: 540 RTVGLRDTWAKVGE 553
>pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna- Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
Length = 548
Score = 483 bits (1244), Expect = e-136, Method: Compositional matrix adjust.
Identities = 260/548 (47%), Positives = 359/548 (65%), Gaps = 29/548 (5%)
Query: 237 KEVLDKHLEVTGGN--VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP 294
++++D+ L +G + V TRFPPEPNGYLHIGHAK++ ++FG+A++ G C LR+DDTNP
Sbjct: 13 RQIIDEDL-ASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNP 71
Query: 295 EAEKKEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 353
E EY++ I+ V+W+G+ + Y+SDYF +L+ A+ELI +G AYVD TPE+I+
Sbjct: 72 VKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIR 131
Query: 354 EYR----EKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 409
EYR + NSP+RDR + E+L LFE MR G EEGKA LR K DM + M D +
Sbjct: 132 EYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVL 191
Query: 410 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL- 468
YRIKF H G+KWCIYP YD+ HCI D++E ITHSLCTLEF+ R Y W+L + +
Sbjct: 192 YRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIP 251
Query: 469 YQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFV 528
P +E+SRLN+ TVMSKRKLN LVT+K+V+GWDDP + T++GLRRRG T+ SI F
Sbjct: 252 VHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFC 311
Query: 529 QGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRW 587
+ IG+++ D+ I + LE IRE+LN+ APR M V++P+K+VI N + G ++ +
Sbjct: 312 KRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTM----- 366
Query: 588 PDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILS 647
P+ +VPFS ++I+ +DFR + +K Y L GK V LR A+ IK E +
Sbjct: 367 PNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEK 425
Query: 648 DDKETILHIRAEY-------DPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSEN 700
D + I I Y DP+ K KGV+HWV+ + L VE+RL+++LF+ N
Sbjct: 426 DAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVS----AAHALPVEIRLYDRLFSVPN 481
Query: 701 PAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFN 759
P DD+LS +NP+S +VI + +AEPSL A G FQFER GYF +D + ST EK VFN
Sbjct: 482 PGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFN 540
Query: 760 RTVTLKDS 767
RTV L+D+
Sbjct: 541 RTVGLRDT 548
>pdb|1NYL|A Chain A, Unliganded Glutaminyl-Trna Synthetase
Length = 539
Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust.
Identities = 260/547 (47%), Positives = 358/547 (65%), Gaps = 29/547 (5%)
Query: 237 KEVLDKHLEVTGGN--VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP 294
++++D+ L +G + V TRFPPEPNGYLHIGHAK++ ++FG+A++ G C LR+DDTNP
Sbjct: 5 RQIIDEDL-ASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNP 63
Query: 295 EAEKKEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 353
E EY++ I+ V+W+G+ + Y+SDYF +L+ A+ELI +G AYVD TPE+I+
Sbjct: 64 VKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIR 123
Query: 354 EYR----EKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 409
EYR + NSP+RDR + E+L LFE MR G EEGKA LR K DM + M D +
Sbjct: 124 EYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVL 183
Query: 410 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL- 468
YRIKF H G+KWCIYP YD+ HCI D++E ITHSLCTLEF+ R Y W+L + +
Sbjct: 184 YRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIP 243
Query: 469 YQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFV 528
P +E+SRLN+ TVMSKRKLN LVT+K+V+GWDDP + T++GLRRRG T+ SI F
Sbjct: 244 VHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFC 303
Query: 529 QGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRW 587
+ IG+++ D+ I + LE IRE+LN+ APR M V++P+K+VI N + G ++ +
Sbjct: 304 KRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTM----- 358
Query: 588 PDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILS 647
P+ +VPFS ++I+ +DFR + +K Y L GK V LR A+ IK E +
Sbjct: 359 PNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEK 417
Query: 648 DDKETILHIRAEY-------DPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSEN 700
D + I I Y DP+ K KGV+HWV+ + L VE+RL+++LF+ N
Sbjct: 418 DAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVS----AAHALPVEIRLYDRLFSVPN 473
Query: 701 PAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFN 759
P DD+LS +NP+S +VI + +AEPSL A G FQFER GYF +D + ST EK VFN
Sbjct: 474 PGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFN 532
Query: 760 RTVTLKD 766
RTV L+D
Sbjct: 533 RTVGLRD 539
>pdb|2RD2|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L- Glutaminyl)-Sulfamoyl]adenosine
pdb|2RE8|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L-Glutamyl)-Sulfamoyl]adenosine
Length = 556
Score = 478 bits (1230), Expect = e-135, Method: Compositional matrix adjust.
Identities = 259/549 (47%), Positives = 358/549 (65%), Gaps = 29/549 (5%)
Query: 237 KEVLDKHLEVTGGN--VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP 294
++++D+ L +G + V TRFPPEPNGYLHIGHAK++ ++FG+A++ G C LR+DDTNP
Sbjct: 13 RQIIDEDL-ASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNP 71
Query: 295 EAEKKEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 353
E EY++ I+ V+W+G+ + Y+SDYF +L+ A+ELI +G AYVD TPE+I+
Sbjct: 72 VKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIR 131
Query: 354 EYR----EKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 409
EYR + NSP+RDR + E+L LFE MR G EEGKA LR K DM + M D +
Sbjct: 132 EYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVL 191
Query: 410 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL- 468
YRIKF H G+KWCIYP YD+ HCI D++E ITHSL TLEF+ R Y W+L + +
Sbjct: 192 YRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLRTLEFQDNRRLYDWVLDNITIP 251
Query: 469 YQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFV 528
P +E+SRLN+ TVMSKRKLN LVT+K+V+GWDDP + T++GLRRRG T+ SI F
Sbjct: 252 VHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFC 311
Query: 529 QGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRW 587
+ IG+++ D+ I + LE IRE+LN+ APR M V++P+K+VI N + G ++ +
Sbjct: 312 KRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTM----- 366
Query: 588 PDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILS 647
P+ +VPFS ++I+ +DFR + +K Y L GK V LR A+ IK E +
Sbjct: 367 PNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEK 425
Query: 648 DDKETILHIRAEY-------DPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSEN 700
D + I I Y DP+ K KGV+HWV+ + L VE+RL+++LF+ N
Sbjct: 426 DAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVS----AAHALPVEIRLYDRLFSVPN 481
Query: 701 PAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFN 759
P DD+LS +NP+S +VI + +AEPSL A G FQFER GYF +D + ST EK VFN
Sbjct: 482 PGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFN 540
Query: 760 RTVTLKDSF 768
RTV L+D+
Sbjct: 541 RTVGLRDTL 549
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 354 bits (909), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 216/592 (36%), Positives = 308/592 (52%), Gaps = 66/592 (11%)
Query: 238 EVLDKHLEVTG-GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA 296
E++++ LE V+TRFPP+P+GY H+GH A +DF A++ GG LR DDTNPE
Sbjct: 53 EIIERDLEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPEL 112
Query: 297 EKKEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY 355
++EY+D I + ++W+G + Y SDYF Y A +LIR+G AYV+ +PEE+
Sbjct: 113 ARQEYVDSIADDLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRL 172
Query: 356 REKKMN----SPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYR 411
R SP+RDR + E+L L M+ G +G+ LR K D+ N + D + YR
Sbjct: 173 RGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYR 232
Query: 412 IKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQ 470
I PH D+W IYP+YD+ H + D+IE +THS+C+LEF RA Y WL+ L +
Sbjct: 233 IVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPR 292
Query: 471 PYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQG 530
P+ +E+ R + T+ SKRKL LV V GWDDP + TL RR GVT ++ AF
Sbjct: 293 PHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQ 352
Query: 531 IGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDA 590
IG+SR++ + + E +R++LN APR M VL+P+KV +TN++ + L WP
Sbjct: 353 IGVSRTNRTVDIAVYENAVRDDLNHRAPRVMAVLDPVKVTLTNLDGEKTLSL--PYWPHD 410
Query: 591 QADDA----------------SAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLR 634
D+ A VP + +YIE DF K + L PG +V LR
Sbjct: 411 VVRDSPDGLVGMPGGGRVAPEEAVRDVPLTRELYIERDDFSPAPPKGFKRLTPGGTVRLR 470
Query: 635 YAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEK 694
A I+ + +D+ + HIRA + K GV+HWV+ L E RL+++
Sbjct: 471 GAGIIRADD-FGTDEAGQVTHIRATL-LGEDAKAAGVIHWVS----AERALPAEFRLYDR 524
Query: 695 LF--------------NSENPAELD--------------DWLSDLNPDSKVVIPEAYAEP 726
LF +S PAE + ++ L PDS V+ Y EP
Sbjct: 525 LFRVPHPEGENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVL-RGYVEP 583
Query: 727 SLHSAAVGDRFQFERLGYFAVDK------DSTPEKLVFNRTVTLKDSFPKGG 772
S+ R+QFER GYF D DS + LVF R +TLKD++ K G
Sbjct: 584 SVAGDPADTRYQFERQGYFWRDPVELERVDSREDALVFGRIITLKDTWGKQG 635
>pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
Length = 553
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 159/333 (47%), Gaps = 2/333 (0%)
Query: 242 KHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEY 301
+ L G V+ RF P P+G LHIGHA+A ++ A++ G LR +DT+P E
Sbjct: 88 RELAGVKGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEA 147
Query: 302 IDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMN 361
D I ++W+G E + SD + YE +LI RG AYV PEE +E + +
Sbjct: 148 YDMIPADLEWLGVEWDETVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEA 207
Query: 362 SPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAG 421
R E+L+ + +M ++EG A +R+K D+ + N + D ++ RI HP G
Sbjct: 208 CHCRSLGFRENLQRWREMFE--MKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTG 265
Query: 422 DKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNV 481
++ +YP +++ + D + +TH L + R +L LG P Y RL +
Sbjct: 266 TRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKM 325
Query: 482 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 541
+ +S + GWDDP L TL + RRG+ +I + IG+ +DS +
Sbjct: 326 DDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMS 385
Query: 542 LDRLEYHIREELNKTAPRTMVVLNPLKVVITNM 574
++ R L + A R +P+K+ + +
Sbjct: 386 WKKIYGLNRSILEEEARRYFFAADPVKLEVVGL 418
>pdb|3TL4|X Chain X, Crystal Structure Of The Trna Binding Domain Of
Glutaminyl-Trna Synthetase From Saccharomyces Cerevisiae
Length = 187
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 28/183 (15%)
Query: 11 EILELFLKIGLDDRTAKNTIANNKVTANLTAVIHE------------------AAVTDGC 52
E+ +LF ++G +D+ K + N KV+ +L +I E A+ G
Sbjct: 6 ELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKETPSDYQWNKSTRALVHNLASFVKGT 65
Query: 53 ERRIGNLLYT------IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIEL 106
+ L+ +KT Q++AAF + + G + + E GVG+E++ + +
Sbjct: 66 DLPKSELIVNGIINGDLKTSLQVDAAFKYVKANGEASTKXGX-NENSGVGIEITEDQVRN 124
Query: 107 TVNEVFEENKNTILELRYRTNVGDLFAHVR--KRLPWADPKIVKQLIDARMYELLGERTA 164
V + +ENK IL RY+ V +FA V+ K L WADP+ K +ID + +LLG +
Sbjct: 125 YVXQYIQENKERILTERYKL-VPGIFADVKNLKELKWADPRSFKPIIDQEVLKLLGPKDE 183
Query: 165 ADI 167
D+
Sbjct: 184 RDL 186
>pdb|2O5R|A Chain A, Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec
6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (Tm1351)
From Thermotoga Maritima At 2.5 A Resolution
Length = 481
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 23/215 (10%)
Query: 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 310
V RF P P G+LH+G A+ +F A++ G LR +DT+ E ++EY + + E ++
Sbjct: 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLXESLR 73
Query: 311 WMG--WE----------PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK 358
W+G W+ P++ + + ++E E L++ G AY + PEEI+E REK
Sbjct: 74 WLGLLWDEGPDVGGDHGPYRQSERVEIYREHAE---RLVKEGKAYYVYAYPEEIEEXREK 130
Query: 359 KMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ--NDNFNMYDLIAYRIKFTP 416
++ E + F D R E + LR + ++ + D++ + F
Sbjct: 131 LLSEGKAPHYSQEXFEKF-DTPERRREYEEKGLRPAVFFKXPRKDYVLNDVVKGEVVFKT 189
Query: 417 HPHAGD----KWCIYPSYDYAHCIVDSIENITHSL 447
GD + P+Y++A + D + ITH +
Sbjct: 190 GA-IGDFVIXRSNGLPTYNFACVVDDXLXEITHVI 223
>pdb|2CFO|A Chain A, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
pdb|2CFO|B Chain B, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
Length = 492
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 11/116 (9%)
Query: 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 309
V R P P G LHIG A+ ++ A+ RGG LR +DT+ E + EY ++I E +
Sbjct: 1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGL 60
Query: 310 QWMGWEPFKITY-TSDYFQ----ELYELAVE-LIRRGHAYVDHQTPEEIKEYREKK 359
QW+G +T+ YFQ +LY A++ L+ +G AY + TPEE++ R ++
Sbjct: 61 QWLG-----LTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQ 111
>pdb|4G6Z|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Burkholderia Thailandensis Bound To L-Glutamate
Length = 490
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 132/331 (39%), Gaps = 60/331 (18%)
Query: 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 310
V TRF P P G++H+G+ ++ + A++ G LR +DT+ E +E +D I E +
Sbjct: 26 VRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMA 85
Query: 311 WMGWE----PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK-------- 358
W+G + P+ D ++E+ ++ +G Y + + EE+ RE+
Sbjct: 86 WLGLDYDEGPYYQMQRMDRYREVL---AQMQEKGLVYPXYMSTEELDALRERQRAAGEKP 142
Query: 359 KMNSPWRDRP----------IAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 408
+ + WR P +A L+ F + G + A +K ++ N + DL+
Sbjct: 143 RYDGTWRPEPGKVLPEPPAGVAPVLR-FRNPLTGTVAWDDA---VKGRVEISNEELDDLV 198
Query: 409 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL 468
R T P Y++ + D ITH + + +L ALG
Sbjct: 199 VARPDGT------------PMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGG 246
Query: 469 YQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAF 527
P Y + LN MSKR M++ G R G ++ +
Sbjct: 247 EVPVYAHLPTVLNEQGEKMSKRH----------------GAMSVMGYRDAGYLPEAVLNY 290
Query: 528 VQGIGISRSDSLI--RLDRLEYHIREELNKT 556
+ +G S D+ I R +E+ E L K+
Sbjct: 291 LARLGWSHGDAEIFTREQFVEWFDLEHLGKS 321
>pdb|3AKZ|B Chain B, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|D Chain D, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|C Chain C, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
Length = 487
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 33/183 (18%)
Query: 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 310
V RF P P G+LH+G A+ ++ A++ GG LR +DT+ E +EY I E ++
Sbjct: 25 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 84
Query: 311 WMG--WE----------PFKITYTSDYFQELYELAVELIRRGHAYVDHQTP--------E 350
W G W+ P++ + + ++E E VE R + D + P E
Sbjct: 85 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYE 144
Query: 351 EIKEYREKKMNSPWRDRPIAESLKL------FEDMRNGRIEEGKATLRMKQDMQNDNFNM 404
EY+EK P+ K+ FED+ G +E +TL M+++ F
Sbjct: 145 YPHEYKEK-------GHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPT 197
Query: 405 YDL 407
Y+
Sbjct: 198 YNF 200
>pdb|3AFH|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With A Glutamyl-Amp
Analog
Length = 488
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 33/183 (18%)
Query: 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 310
V RF P P G+LH+G A+ ++ A++ GG LR +DT+ E +EY I E ++
Sbjct: 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 85
Query: 311 WMG--WE----------PFKITYTSDYFQELYELAVELIRRGHAYVDHQTP--------E 350
W G W+ P++ + + ++E E VE R + D + P E
Sbjct: 86 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYE 145
Query: 351 EIKEYREKKMNSPWRDRPIAESLKL------FEDMRNGRIEEGKATLRMKQDMQNDNFNM 404
EY+EK P+ K+ FED+ G +E +TL M+++ F
Sbjct: 146 YPHEYKEK-------GHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPT 198
Query: 405 YDL 407
Y+
Sbjct: 199 YNF 201
>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 592
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 33/183 (18%)
Query: 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 310
V RF P P G+LH+G A+ ++ A++ GG LR +DT+ E +EY I E ++
Sbjct: 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 189
Query: 311 WMG--WE----------PFKITYTSDYFQELYELAVELIRRGHAYVDHQTP--------E 350
W G W+ P++ + + ++E E VE R + D + P E
Sbjct: 190 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYE 249
Query: 351 EIKEYREKKMNSPWRDRPIAESLKL------FEDMRNGRIEEGKATLRMKQDMQNDNFNM 404
EY+EK P+ K+ FED+ G +E +TL M+++ F
Sbjct: 250 YPHEYKEK-------GHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPT 302
Query: 405 YDL 407
Y+
Sbjct: 303 YNF 305
>pdb|4GRI|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
pdb|4GRI|B Chain B, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
Length = 512
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 140/337 (41%), Gaps = 49/337 (14%)
Query: 253 TRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWM 312
R+ P P G HIG + ++ AK GG LR +DT+ E + + ++W+
Sbjct: 27 VRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWL 86
Query: 313 G------------WEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTP---EEIKEYRE 357
G + P+ + S ++ + A LI GHAY + +P E IK+ +
Sbjct: 87 GISFDEGPVVGGDYAPYVQSQRSAIYK---QYAKYLIESGHAYYCYCSPERLERIKKIQN 143
Query: 358 KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPH 417
P DR E++ N I++ K +R K ++ D + D++ RI +
Sbjct: 144 INKMPPGYDRHCRNLSN--EEVENALIKKIKPVVRFKIPLEGDT-SFDDILLGRITWANK 200
Query: 418 PHAGDKWCI----YPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYV 473
+ D + P+Y A+ + D + ITH L E+ + LH L LY+ +
Sbjct: 201 DISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGP-----LHVL-LYKAFK 254
Query: 474 WE---YSRLNV----SNTVMSKRKLNFLVTNKYVDGWDDPCLM---TLAGL----RRRGV 519
W+ Y L + +SKR + + DG+ ++ TL G +R
Sbjct: 255 WKPPIYCHLPMVMGNDGQKLSKRHGSTALRQFIEDGYLPEAIINYVTLLGWSYDDKREFF 314
Query: 520 TSTSINAFVQGIGISRSDSLIRLDRLE----YHIREE 552
+ + F I++S ++ +L+ Y+IRE+
Sbjct: 315 SKNDLEQFFSIEKINKSPAIFDYHKLDFFNSYYIREK 351
>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1G59|C Chain C, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1GLN|A Chain A, Architectures Of Class-Defining And Specific Domains Of
Glutamyl-Trna Synthetase
Length = 468
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 117/274 (42%), Gaps = 61/274 (22%)
Query: 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV- 309
V+TR P P G H+G A ++ A+ GG +R +DT+ + Y+ EE +
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTD----RARYVPGAEERIL 57
Query: 310 ---QWMGWE----PFKITYTSDYFQE----LYE-LAVELIRRGHAYVDHQTPEEIKEYRE 357
+W+G P T Y Q LY+ A EL++RG AY +TPEE+++ R+
Sbjct: 58 AALKWLGLSYDEGPDVAAPTGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRK 117
Query: 358 KKMNSPWRDRPIAESLKLFEDMRNG-----RIEEGK-ATLRMKQDMQN----DNFNMYDL 407
+K R R I + E R G R++ + T +K +++ DN + D+
Sbjct: 118 EKGGYDGRARNIPPE-EAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDV 176
Query: 408 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWL----L 463
+ + YP+Y A+ + D + +T + E WL +
Sbjct: 177 VLLKSDG------------YPTYHLANVVDDHLMGVTDVIRAEE---------WLVSTPI 215
Query: 464 HALGLYQPYVWEYSRL-------NVSNTVMSKRK 490
H L LY+ + WE R N T +SKRK
Sbjct: 216 HVL-LYRAFGWEAPRFYHMPLLRNPDKTKISKRK 248
>pdb|1J09|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp And Glu
pdb|1N75|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp.
pdb|1N77|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N77|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N78|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|1N78|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|2CUZ|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With L-Glutamate
pdb|2CV0|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV0|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV1|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV1|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV2|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2CV2|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2DXI|A Chain A, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
pdb|2DXI|B Chain B, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
Length = 468
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 117/277 (42%), Gaps = 67/277 (24%)
Query: 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV- 309
V+TR P P G H+G A ++ A+ GG +R +DT+ + Y+ EE +
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTD----RARYVPGAEERIL 57
Query: 310 ---QWMGWE------------PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKE 354
+W+G P++ + +Q+ E EL++RG AY +TPEE+++
Sbjct: 58 AALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAE---ELLKRGWAYRAFETPEELEQ 114
Query: 355 YREKKMNSPWRDRPIAESLKLFEDMRNG-----RIEEGK-ATLRMKQDMQN----DNFNM 404
R++K R R I + E R G R++ + T +K +++ DN +
Sbjct: 115 IRKEKGGYDGRARNIPPE-EAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEI 173
Query: 405 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWL-- 462
D++ + YP+Y A+ + D + +T + E WL
Sbjct: 174 PDVVLLKSDG------------YPTYHLANVVDDHLMGVTDVIRAEE---------WLVS 212
Query: 463 --LHALGLYQPYVWEYSRL-------NVSNTVMSKRK 490
+H L LY+ + WE R N T +SKRK
Sbjct: 213 TPIHVL-LYRAFGWEAPRFYHMPLLRNPDKTKISKRK 248
>pdb|3PNY|A Chain A, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
pdb|3PNY|B Chain B, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
Length = 505
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 92/218 (42%), Gaps = 30/218 (13%)
Query: 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 309
V RF P P G H+G + ++ A+ GG R +DT+ + + +E + + +
Sbjct: 21 TVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDAL 80
Query: 310 QWMG--WE----------PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY-- 355
+W+G W+ P++ + ++ ++++ L+ G AY TPEE++
Sbjct: 81 RWLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVL---ARLLAAGEAYHAFSTPEEVEARHV 137
Query: 356 ---REKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRI 412
R K+ DR + ++ R + EG+ + ++ M +D+ DL+ +
Sbjct: 138 AAGRNPKLGYDNFDRHLTDA------QRAAYLAEGRQPV-VRLRMPDDDLAWNDLVRGPV 190
Query: 413 KFTPHP---HAGDKWCIYPSYDYAHCIVDSIENITHSL 447
F A + P Y + D++ ITH L
Sbjct: 191 TFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVL 228
>pdb|3PNV|A Chain A, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
pdb|3PNV|B Chain B, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
Length = 505
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 92/218 (42%), Gaps = 30/218 (13%)
Query: 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 309
V RF P P G H+G + ++ A+ GG R +DT+ + + +E + + +
Sbjct: 21 TVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDAL 80
Query: 310 QWMG--WE----------PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY-- 355
+W+G W+ P++ + ++ ++++ L+ G AY TPEE++
Sbjct: 81 RWLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVL---ARLLAAGEAYHAFSTPEEVEARHV 137
Query: 356 ---REKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRI 412
R K+ DR + ++ R + EG+ + ++ M +D+ DL+ +
Sbjct: 138 AAGRNPKLGYDNFDRHLTDA------QRAAYLAEGRQPV-VRLRMPDDDLAWNDLVRGPV 190
Query: 413 KFTPHP---HAGDKWCIYPSYDYAHCIVDSIENITHSL 447
F A + P Y + D++ ITH L
Sbjct: 191 TFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVL 228
>pdb|2JA2|A Chain A, Mycobacterium Tuberculosis Glutamyl-Trna Synthetase
Length = 498
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 92/218 (42%), Gaps = 30/218 (13%)
Query: 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 309
V RF P P G H+G + ++ A+ GG R +DT+ + + +E + + +
Sbjct: 6 TVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDAL 65
Query: 310 QWMG--WE----------PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY-- 355
+W+G W+ P++ + ++ ++++ L+ G AY TPEE++
Sbjct: 66 RWLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVL---ARLLAAGEAYHAFSTPEEVEARHV 122
Query: 356 ---REKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRI 412
R K+ DR + ++ R + EG+ + ++ M +D+ DL+ +
Sbjct: 123 AAGRNPKLGYDNFDRHLTDA------QRAAYLAEGRQPV-VRLRMPDDDLAWNDLVRGPV 175
Query: 413 KFTPHP---HAGDKWCIYPSYDYAHCIVDSIENITHSL 447
F A + P Y + D++ ITH L
Sbjct: 176 TFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVL 213
>pdb|1NZJ|A Chain A, Crystal Structure And Activity Studies Of Escherichia Coli
Yadb Orf
pdb|4A91|A Chain A, Crystal Structure Of The Glutamyl-Queuosine Trnaasp
Synthetase From E.Coli Complexed With L-Glutamate
Length = 298
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 246 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAE 297
+T + RF P P+G LH G A + A+ R G +R +D +P E
Sbjct: 1 MTDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPRE 52
>pdb|2P61|A Chain A, Crystal Structure Of Protein Tm1646 From Thermotoga
Maritima, Pfam Duf327
Length = 162
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 34/100 (34%)
Query: 295 EAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVE-LIRRGHAYVDHQTPEEIK 353
E++KKE+ D +E++ + D+F++L E AVE +I G+ V TP +K
Sbjct: 31 ESKKKEFFDILEDVKE-------------DHFEKLLEEAVEEVIDSGNELVRSPTPSNLK 77
Query: 354 EYREKKMNSPWRDRPIAESLKLFE----------DMRNGR 383
Y+ I E LKL E DM +GR
Sbjct: 78 RYK----------NAIKEFLKLIEKKIYKLAGSFDMNSGR 107
>pdb|3DH7|A Chain A, Structure Of T. Thermophilus Idi-2 In Complex With Ppi
pdb|3DH7|B Chain B, Structure Of T. Thermophilus Idi-2 In Complex With Ppi
pdb|3DH7|C Chain C, Structure Of T. Thermophilus Idi-2 In Complex With Ppi
pdb|3DH7|D Chain D, Structure Of T. Thermophilus Idi-2 In Complex With Ppi
Length = 332
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 13/128 (10%)
Query: 530 GIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPD 589
G+G+ I L+R E + K AP+ +++ N + + D R +
Sbjct: 88 GVGMMLGSGRILLERPEALRSFRVRKVAPKALLIAN-----LGLAQLRRYGRDDLLRLVE 142
Query: 590 AQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDD 649
DA AF+ P V +DFR GL + LL FP+ EV
Sbjct: 143 MLEADALAFHVNPLQEAVQRGDTDFR--------GLVERLAELLPLPFPVMVKEVGHGLS 194
Query: 650 KETILHIR 657
+E L +R
Sbjct: 195 REAALALR 202
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 60 LYTIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIEL--TVNEVFEENKN 117
L ++ L +AFS+F GS +DE ++AC + +DI + + E+ ++N
Sbjct: 75 LNKLEREENLVSAFSYFDKDGSGYITLDEIQQACK---DFGLDDIHIDDMIKEIDQDNDG 131
Query: 118 TILELRYRTNVGDLFAHVRKR 138
I + G+ A +RKR
Sbjct: 132 QI-------DYGEFAAMMRKR 145
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 213 PEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGN---VLTRFPPEPNGYLHIGHA 268
P+ ++ + +P + + + ++ K LE GN +L PP NG LH+GHA
Sbjct: 10 PKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHA 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,861,314
Number of Sequences: 62578
Number of extensions: 1033307
Number of successful extensions: 2690
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2568
Number of HSP's gapped (non-prelim): 53
length of query: 773
length of database: 14,973,337
effective HSP length: 106
effective length of query: 667
effective length of database: 8,340,069
effective search space: 5562826023
effective search space used: 5562826023
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)