Query 004119
Match_columns 773
No_of_seqs 370 out of 2461
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 17:53:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1148 Glutaminyl-tRNA synthe 100.0 9E-218 2E-222 1765.5 50.8 730 8-771 2-764 (764)
2 PLN02859 glutamine-tRNA ligase 100.0 1E-212 3E-217 1819.3 75.5 761 7-773 3-788 (788)
3 PTZ00437 glutaminyl-tRNA synth 100.0 9E-153 2E-157 1285.8 55.9 544 207-772 19-564 (574)
4 PRK05347 glutaminyl-tRNA synth 100.0 3E-149 6E-154 1259.8 56.4 526 237-771 15-554 (554)
5 PRK14703 glutaminyl-tRNA synth 100.0 2E-145 5E-150 1272.2 56.5 528 237-772 17-560 (771)
6 TIGR00440 glnS glutaminyl-tRNA 100.0 3E-145 6E-150 1225.2 51.4 508 251-768 1-522 (522)
7 PLN03233 putative glutamate-tR 100.0 9E-138 2E-142 1162.9 51.5 501 246-768 7-512 (523)
8 PTZ00402 glutamyl-tRNA synthet 100.0 5E-135 1E-139 1150.6 52.8 505 246-767 48-554 (601)
9 PLN02907 glutamate-tRNA ligase 100.0 1E-131 3E-136 1159.0 53.6 502 247-765 210-716 (722)
10 PRK04156 gltX glutamyl-tRNA sy 100.0 1E-119 3E-124 1027.2 57.0 453 248-752 99-557 (567)
11 TIGR00463 gltX_arch glutamyl-t 100.0 8E-119 2E-123 1019.0 48.2 465 247-758 90-557 (560)
12 KOG1147 Glutamyl-tRNA syntheta 100.0 3E-118 7E-123 972.0 46.6 503 246-766 196-704 (712)
13 COG0008 GlnS Glutamyl- and glu 100.0 8.3E-91 1.8E-95 778.6 2.2 448 251-748 10-472 (472)
14 PLN02627 glutamyl-tRNA synthet 100.0 5.3E-75 1.1E-79 655.2 24.4 322 240-587 35-384 (535)
15 PRK12410 glutamylglutaminyl-tR 100.0 3.3E-74 7.1E-79 638.9 22.0 289 252-573 1-304 (433)
16 PF00749 tRNA-synt_1c: tRNA sy 100.0 1.7E-74 3.6E-79 623.6 15.2 306 250-571 1-314 (314)
17 cd00807 GlnRS_core catalytic c 100.0 2E-72 4.3E-77 580.5 23.7 238 250-559 1-238 (238)
18 PRK12558 glutamyl-tRNA synthet 100.0 1.1E-72 2.4E-77 629.2 22.9 294 250-573 2-310 (445)
19 KOG1149 Glutamyl-tRNA syntheta 100.0 2.2E-72 4.8E-77 603.3 19.8 298 249-573 32-352 (524)
20 PRK01406 gltX glutamyl-tRNA sy 100.0 5.2E-70 1.1E-74 616.5 24.6 299 248-573 2-321 (476)
21 PRK14895 gltX glutamyl-tRNA sy 100.0 3.2E-70 6.8E-75 615.6 22.2 309 248-587 2-330 (513)
22 cd09287 GluRS_non_core catalyt 100.0 1.3E-69 2.9E-74 561.1 23.8 238 250-559 1-240 (240)
23 PRK05710 glutamyl-Q tRNA(Asp) 100.0 6.1E-69 1.3E-73 573.0 24.9 272 248-566 3-298 (299)
24 TIGR00464 gltX_bact glutamyl-t 100.0 8.6E-69 1.9E-73 606.2 24.4 298 250-573 1-312 (470)
25 TIGR03838 queuosine_YadB gluta 100.0 2.9E-67 6.3E-72 554.4 22.1 261 251-548 1-271 (272)
26 cd00418 GlxRS_core catalytic c 100.0 4.5E-62 9.7E-67 503.0 17.1 222 250-573 1-224 (230)
27 cd00808 GluRS_core catalytic c 100.0 2.4E-58 5.1E-63 478.5 16.1 223 250-573 1-233 (239)
28 PF03950 tRNA-synt_1c_C: tRNA 100.0 8.4E-43 1.8E-47 347.5 13.6 171 557-748 1-174 (174)
29 PF04558 tRNA_synt_1c_R1: Glut 100.0 4.9E-40 1.1E-44 323.5 11.6 138 8-145 2-164 (164)
30 COG0215 CysS Cysteinyl-tRNA sy 100.0 2.2E-28 4.8E-33 271.4 15.1 253 256-549 29-315 (464)
31 PF01406 tRNA-synt_1e: tRNA sy 99.9 1.6E-27 3.5E-32 253.3 11.0 251 256-548 15-298 (300)
32 TIGR00435 cysS cysteinyl-tRNA 99.9 5E-25 1.1E-29 250.2 19.1 255 255-551 27-314 (465)
33 PLN02946 cysteine-tRNA ligase 99.9 1.1E-25 2.4E-30 257.7 11.9 253 256-550 87-371 (557)
34 PRK00260 cysS cysteinyl-tRNA s 99.9 1.2E-24 2.6E-29 247.3 19.6 262 248-551 21-315 (463)
35 PRK14534 cysS cysteinyl-tRNA s 99.9 7E-25 1.5E-29 247.6 16.3 249 256-549 28-327 (481)
36 PRK12418 cysteinyl-tRNA synthe 99.9 6.2E-25 1.3E-29 242.7 13.8 257 256-550 16-310 (384)
37 PRK14536 cysS cysteinyl-tRNA s 99.9 2.1E-24 4.7E-29 244.7 18.0 254 256-550 30-328 (490)
38 PRK14535 cysS cysteinyl-tRNA s 99.9 7.1E-24 1.5E-28 244.6 18.2 252 256-549 255-555 (699)
39 TIGR03447 mycothiol_MshC cyste 99.9 2.5E-24 5.4E-29 239.1 12.8 256 256-549 43-336 (411)
40 PTZ00399 cysteinyl-tRNA-synthe 99.9 1.2E-22 2.6E-27 238.4 15.3 283 235-550 44-363 (651)
41 KOG2007 Cysteinyl-tRNA synthet 99.9 3.1E-22 6.7E-27 220.2 14.1 263 235-538 39-342 (586)
42 cd00671 ArgRS_core catalytic c 99.7 1.8E-17 3.9E-22 170.4 15.0 184 251-491 2-212 (212)
43 PRK11893 methionyl-tRNA synthe 99.6 2.6E-14 5.6E-19 164.5 18.9 272 251-551 4-349 (511)
44 PRK01611 argS arginyl-tRNA syn 99.6 5.9E-15 1.3E-19 170.1 13.1 227 248-548 110-385 (507)
45 PF04557 tRNA_synt_1c_R2: Glut 99.6 1E-15 2.2E-20 135.3 2.3 82 146-243 1-84 (84)
46 cd00668 Ile_Leu_Val_MetRS_core 99.5 1.8E-12 4E-17 140.6 17.8 243 253-532 5-304 (312)
47 cd00802 class_I_aaRS_core cata 99.4 3.7E-13 8E-18 129.8 8.3 133 252-490 1-143 (143)
48 cd00814 MetRS_core catalytic c 99.4 1.4E-11 3E-16 134.4 19.0 94 251-344 3-116 (319)
49 TIGR00398 metG methionyl-tRNA 99.4 1.2E-11 2.6E-16 143.4 17.7 94 251-344 2-115 (530)
50 cd00672 CysRS_core catalytic c 99.3 7.6E-12 1.6E-16 129.2 11.5 163 255-536 26-209 (213)
51 PRK00133 metG methionyl-tRNA s 99.2 3.2E-10 7E-15 135.2 19.2 94 251-344 5-118 (673)
52 PRK12268 methionyl-tRNA synthe 99.2 2E-10 4.2E-15 134.1 15.4 94 251-344 6-120 (556)
53 cd00818 IleRS_core catalytic c 99.2 5.3E-10 1.1E-14 123.1 16.6 91 256-346 9-138 (338)
54 PRK12267 methionyl-tRNA synthe 99.2 1.4E-09 3E-14 129.3 21.2 94 251-344 7-120 (648)
55 PRK00750 lysK lysyl-tRNA synth 99.2 4.9E-10 1.1E-14 129.4 16.7 252 250-552 24-329 (510)
56 cd00812 LeuRS_core catalytic c 99.2 2.5E-10 5.3E-15 124.4 13.5 93 252-344 4-118 (314)
57 PLN02224 methionine-tRNA ligas 99.1 1.5E-09 3.4E-14 127.6 19.2 94 251-344 72-185 (616)
58 cd00674 LysRS_core_class_I cat 99.1 2.6E-09 5.7E-14 117.9 19.5 236 249-532 19-306 (353)
59 PLN02610 probable methionyl-tR 99.0 4.3E-09 9.3E-14 127.3 15.3 94 251-344 20-134 (801)
60 PF09334 tRNA-synt_1g: tRNA sy 99.0 2.6E-09 5.6E-14 119.9 11.5 282 252-556 3-382 (391)
61 COG0143 MetG Methionyl-tRNA sy 99.0 6.2E-09 1.4E-13 120.6 14.7 94 251-344 8-121 (558)
62 cd00817 ValRS_core catalytic c 99.0 1.1E-08 2.3E-13 114.6 16.0 93 252-344 5-135 (382)
63 PRK12451 arginyl-tRNA syntheta 98.9 2.6E-08 5.7E-13 116.6 15.6 86 405-517 294-388 (562)
64 TIGR00456 argS arginyl-tRNA sy 98.8 6.9E-08 1.5E-12 113.3 14.5 76 405-492 298-379 (566)
65 TIGR00467 lysS_arch lysyl-tRNA 98.7 4E-07 8.7E-12 105.3 19.4 247 249-553 18-324 (515)
66 PLN02286 arginine-tRNA ligase 98.6 4.4E-07 9.5E-12 106.7 16.1 45 249-293 117-164 (576)
67 cd00806 TrpRS_core catalytic c 98.6 3.4E-07 7.4E-12 98.6 12.1 171 258-491 7-197 (280)
68 COG0018 ArgS Arginyl-tRNA synt 98.6 2.7E-06 5.8E-11 99.7 19.2 240 248-517 116-400 (577)
69 PRK13208 valS valyl-tRNA synth 98.6 7.8E-07 1.7E-11 108.5 15.4 93 252-344 42-169 (800)
70 TIGR00422 valS valyl-tRNA synt 98.5 7.7E-06 1.7E-10 100.7 22.1 93 252-344 37-167 (861)
71 PF00750 tRNA-synt_1d: tRNA sy 98.4 3.3E-06 7.1E-11 93.9 13.0 48 247-294 18-68 (354)
72 KOG0436 Methionyl-tRNA synthet 98.2 1.1E-05 2.3E-10 89.2 12.3 275 258-555 49-398 (578)
73 PF01921 tRNA-synt_1f: tRNA sy 98.2 8.6E-06 1.9E-10 90.0 11.7 244 237-530 9-311 (360)
74 PRK12285 tryptophanyl-tRNA syn 97.8 0.00025 5.4E-09 79.4 14.3 189 234-491 51-257 (368)
75 TIGR00233 trpS tryptophanyl-tR 97.8 0.0002 4.3E-09 79.0 13.4 170 258-492 10-199 (328)
76 PRK00390 leuS leucyl-tRNA synt 97.8 4.6E-05 9.9E-10 93.2 7.8 94 251-344 35-150 (805)
77 TIGR00396 leuS_bact leucyl-tRN 97.7 5.9E-05 1.3E-09 92.6 8.3 94 251-344 32-147 (842)
78 COG1384 LysS Lysyl-tRNA synthe 97.7 0.0004 8.7E-09 79.4 13.2 96 441-553 228-329 (521)
79 COG0180 TrpS Tryptophanyl-tRNA 97.6 0.00039 8.5E-09 75.9 11.4 183 258-507 13-215 (314)
80 cd00805 TyrRS_core catalytic c 97.6 0.0013 2.9E-08 70.6 14.6 222 258-554 8-251 (269)
81 PLN02563 aminoacyl-tRNA ligase 97.5 0.00022 4.8E-09 88.4 9.2 94 251-344 113-229 (963)
82 PRK12556 tryptophanyl-tRNA syn 97.5 0.0011 2.4E-08 73.2 12.8 179 258-492 11-209 (332)
83 PTZ00419 valyl-tRNA synthetase 97.4 0.00029 6.2E-09 88.3 8.4 94 251-344 63-195 (995)
84 PRK08560 tyrosyl-tRNA syntheta 97.4 0.0018 3.9E-08 71.5 13.6 189 236-490 17-219 (329)
85 TIGR00392 ileS isoleucyl-tRNA 97.4 0.00037 8E-09 86.1 8.7 96 251-346 39-173 (861)
86 PRK05743 ileS isoleucyl-tRNA s 97.3 0.00044 9.5E-09 85.8 8.3 94 251-344 52-180 (912)
87 PLN02943 aminoacyl-tRNA ligase 97.3 0.00064 1.4E-08 84.7 9.6 94 251-344 91-222 (958)
88 PRK05729 valS valyl-tRNA synth 97.3 0.00049 1.1E-08 85.1 8.4 89 256-344 44-170 (874)
89 PLN02843 isoleucyl-tRNA synthe 97.3 0.0005 1.1E-08 85.8 8.3 94 251-344 35-164 (974)
90 PLN02486 aminoacyl-tRNA ligase 97.3 0.012 2.6E-07 66.4 18.1 80 256-335 79-169 (383)
91 PRK14900 valS valyl-tRNA synth 97.3 0.00046 9.9E-09 86.7 7.4 94 251-344 51-183 (1052)
92 COG0495 LeuS Leucyl-tRNA synth 97.2 0.00026 5.5E-09 85.7 4.6 91 252-344 38-152 (814)
93 PLN02381 valyl-tRNA synthetase 97.2 0.00068 1.5E-08 85.2 8.3 95 251-345 131-264 (1066)
94 PF00133 tRNA-synt_1: tRNA syn 97.2 0.0009 1.9E-08 79.6 8.6 93 252-344 27-158 (601)
95 PRK06039 ileS isoleucyl-tRNA s 97.2 0.0008 1.7E-08 84.1 8.4 94 251-344 44-176 (975)
96 PTZ00427 isoleucine-tRNA ligas 97.2 0.00086 1.9E-08 85.0 8.3 91 254-344 108-237 (1205)
97 PLN02882 aminoacyl-tRNA ligase 97.1 0.0013 2.7E-08 83.5 8.5 89 256-344 46-173 (1159)
98 TIGR00395 leuS_arch leucyl-tRN 97.0 0.001 2.3E-08 82.8 7.1 94 251-344 28-167 (938)
99 COG0525 ValS Valyl-tRNA synthe 96.9 0.0022 4.7E-08 78.0 8.6 90 255-344 40-167 (877)
100 PRK13804 ileS isoleucyl-tRNA s 96.9 0.002 4.4E-08 80.4 8.4 94 251-344 57-188 (961)
101 PRK13354 tyrosyl-tRNA syntheta 96.8 0.044 9.5E-07 62.5 17.7 98 442-554 186-287 (410)
102 PF00579 tRNA-synt_1b: tRNA sy 96.8 0.0033 7.2E-08 68.0 7.8 174 258-492 13-205 (292)
103 PRK00927 tryptophanyl-tRNA syn 96.8 0.0028 6.1E-08 70.2 7.3 74 258-333 9-90 (333)
104 cd00395 Tyr_Trp_RS_core cataly 96.8 0.011 2.5E-07 63.7 11.6 174 258-493 7-206 (273)
105 PTZ00126 tyrosyl-tRNA syntheta 96.7 0.035 7.6E-07 62.7 15.3 92 236-328 53-155 (383)
106 PRK05912 tyrosyl-tRNA syntheta 96.6 0.072 1.6E-06 60.8 16.8 88 237-328 22-130 (408)
107 KOG0435 Leucyl-tRNA synthetase 96.4 0.0044 9.5E-08 72.5 5.6 95 250-344 59-175 (876)
108 COG2511 GatE Archaeal Glu-tRNA 96.2 0.077 1.7E-06 61.1 14.4 140 11-160 458-630 (631)
109 cd02156 nt_trans nucleotidyl t 95.9 0.052 1.1E-06 49.8 9.0 39 253-296 2-40 (105)
110 PLN02959 aminoacyl-tRNA ligase 95.7 0.021 4.5E-07 72.4 7.9 38 250-287 46-86 (1084)
111 COG0008 GlnS Glutamyl- and glu 95.6 0.006 1.3E-07 70.4 2.1 66 508-573 257-322 (472)
112 TIGR00395 leuS_arch leucyl-tRN 95.4 0.041 8.9E-07 68.9 8.5 64 471-550 605-669 (938)
113 KOG0432 Valyl-tRNA synthetase 95.2 0.046 1E-06 66.0 7.6 92 255-346 82-212 (995)
114 PLN02751 glutamyl-tRNA(Gln) am 94.7 0.56 1.2E-05 55.2 14.8 142 10-155 367-541 (544)
115 PRK12282 tryptophanyl-tRNA syn 94.7 0.078 1.7E-06 58.9 7.5 92 251-352 5-104 (333)
116 TIGR00134 gatE_arch glutamyl-t 94.6 0.58 1.3E-05 56.0 14.8 140 9-155 448-617 (620)
117 PRK12300 leuS leucyl-tRNA synt 94.3 0.1 2.2E-06 65.1 8.1 60 473-548 565-624 (897)
118 PLN02886 aminoacyl-tRNA ligase 93.8 0.12 2.6E-06 58.5 6.6 92 251-353 49-148 (389)
119 PRK04028 glutamyl-tRNA(Gln) am 93.7 1.2 2.6E-05 53.4 14.9 145 9-160 455-629 (630)
120 PRK12283 tryptophanyl-tRNA syn 93.7 0.12 2.5E-06 58.7 6.2 67 258-325 10-85 (398)
121 PRK05477 gatB aspartyl/glutamy 93.4 1.3 2.9E-05 51.4 14.4 140 10-154 299-473 (474)
122 PLN02943 aminoacyl-tRNA ligase 93.0 0.17 3.7E-06 63.6 6.9 65 472-554 569-634 (958)
123 PRK12284 tryptophanyl-tRNA syn 92.7 0.36 7.9E-06 55.2 8.3 87 258-353 10-106 (431)
124 TIGR00133 gatB glutamyl-tRNA(G 92.7 2.3 4.9E-05 49.7 14.8 139 12-154 304-476 (478)
125 PRK06039 ileS isoleucyl-tRNA s 92.3 0.22 4.8E-06 62.8 6.5 67 473-555 579-646 (975)
126 PRK14703 glutaminyl-tRNA synth 92.1 2.2 4.8E-05 52.4 14.4 139 13-155 600-770 (771)
127 PRK05729 valS valyl-tRNA synth 91.5 0.48 1E-05 59.2 8.1 67 472-555 506-573 (874)
128 PRK12300 leuS leucyl-tRNA synt 91.2 0.29 6.3E-06 61.2 5.9 80 263-344 1-128 (897)
129 PTZ00348 tyrosyl-tRNA syntheta 90.2 1.3 2.9E-05 53.6 9.9 90 236-326 19-119 (682)
130 PLN02959 aminoacyl-tRNA ligase 89.9 0.9 2E-05 58.0 8.6 60 473-548 706-765 (1084)
131 PRK14900 valS valyl-tRNA synth 89.7 0.77 1.7E-05 58.5 7.8 66 473-555 525-591 (1052)
132 TIGR00392 ileS isoleucyl-tRNA 89.6 0.52 1.1E-05 58.7 6.1 65 473-554 598-663 (861)
133 COG0162 TyrS Tyrosyl-tRNA synt 89.1 6.4 0.00014 45.0 13.7 103 235-341 19-138 (401)
134 PLN02843 isoleucyl-tRNA synthe 87.0 1.7 3.8E-05 54.9 8.4 60 471-546 596-664 (974)
135 PRK13804 ileS isoleucyl-tRNA s 86.0 1.9 4E-05 54.6 7.9 59 472-547 616-675 (961)
136 COG0060 IleS Isoleucyl-tRNA sy 85.7 1.4 3E-05 55.0 6.4 90 256-345 57-184 (933)
137 PRK05743 ileS isoleucyl-tRNA s 85.5 1.9 4.1E-05 54.3 7.6 58 473-547 579-637 (912)
138 PLN02882 aminoacyl-tRNA ligase 85.5 1.2 2.6E-05 57.2 6.0 68 467-550 594-664 (1159)
139 TIGR00234 tyrS tyrosyl-tRNA sy 85.4 3.9 8.6E-05 46.3 9.4 86 237-327 20-124 (377)
140 PTZ00427 isoleucine-tRNA ligas 85.2 1.8 3.9E-05 55.9 7.2 64 474-553 708-773 (1205)
141 COG0525 ValS Valyl-tRNA synthe 83.0 3.6 7.8E-05 51.0 8.2 67 465-547 502-571 (877)
142 PF00133 tRNA-synt_1: tRNA syn 82.9 2.7 5.8E-05 50.4 7.1 47 472-534 547-594 (601)
143 PF02637 GatB_Yqey: GatB domai 81.5 9.2 0.0002 37.3 9.1 114 38-154 23-147 (148)
144 PF09424 YqeY: Yqey-like prote 78.8 3.2 6.9E-05 40.8 4.8 59 89-154 83-142 (143)
145 PRK00390 leuS leucyl-tRNA synt 77.3 5.6 0.00012 49.5 7.5 48 485-548 570-617 (805)
146 COG0064 GatB Asp-tRNAAsn/Glu-t 77.0 44 0.00094 39.2 13.9 135 16-154 311-479 (483)
147 TIGR00396 leuS_bact leucyl-tRN 76.7 3 6.5E-05 52.0 5.0 47 485-547 604-650 (842)
148 PTZ00419 valyl-tRNA synthetase 76.2 5.1 0.00011 50.9 6.9 54 259-315 312-376 (995)
149 smart00845 GatB_Yqey GatB doma 75.4 45 0.00098 32.6 11.9 112 39-154 23-146 (147)
150 COG0495 LeuS Leucyl-tRNA synth 75.2 6.5 0.00014 48.7 7.1 116 405-536 481-614 (814)
151 KOG2713 Mitochondrial tryptoph 73.4 6.5 0.00014 42.8 5.7 69 257-325 20-99 (347)
152 PF00749 tRNA-synt_1c: tRNA sy 72.2 0.32 6.8E-06 53.7 -4.5 38 500-537 258-295 (314)
153 PLN02563 aminoacyl-tRNA ligase 69.1 5.9 0.00013 50.2 5.0 56 482-554 720-775 (963)
154 PLN02381 valyl-tRNA synthetase 68.9 10 0.00023 48.6 7.2 56 259-315 378-443 (1066)
155 PHA01735 hypothetical protein 66.1 7.5 0.00016 33.6 3.5 43 65-107 31-75 (76)
156 KOG0437 Leucyl-tRNA synthetase 61.2 15 0.00032 44.8 5.9 70 245-317 40-116 (1080)
157 KOG0433 Isoleucyl-tRNA synthet 58.6 33 0.00072 42.0 8.1 107 237-346 46-189 (937)
158 KOG2438 Glutamyl-tRNA amidotra 49.6 2.8E+02 0.006 32.4 13.1 140 15-155 327-503 (505)
159 COG0060 IleS Isoleucyl-tRNA sy 45.9 11 0.00023 47.5 1.6 56 476-548 592-648 (933)
160 KOG2145 Cytoplasmic tryptophan 42.5 26 0.00056 38.4 3.7 60 260-319 96-162 (397)
161 KOG0437 Leucyl-tRNA synthetase 42.0 5.7 0.00012 48.1 -1.4 49 476-540 701-749 (1080)
162 KOG4426 Arginyl-tRNA synthetas 31.0 41 0.00089 38.8 3.1 46 248-293 187-235 (656)
163 PLN02207 UDP-glycosyltransfera 30.7 75 0.0016 37.2 5.4 73 84-163 383-468 (468)
164 COG1610 Uncharacterized conser 23.2 2E+02 0.0043 28.7 5.8 52 98-154 94-146 (148)
165 PF10440 WIYLD: Ubiquitin-bind 23.2 65 0.0014 27.8 2.2 29 4-32 6-34 (65)
166 KOG0434 Isoleucyl-tRNA synthet 22.2 3.6E+02 0.0078 33.4 8.7 49 240-288 27-80 (1070)
167 COG3118 Thioredoxin domain-con 20.6 2.8E+02 0.0062 30.8 7.0 86 69-165 206-291 (304)
168 cd02168 NMNAT_Nudix Nicotinami 20.5 2.2E+02 0.0047 29.1 5.8 58 250-316 3-66 (181)
No 1
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-218 Score=1765.48 Aligned_cols=730 Identities=57% Similarity=0.966 Sum_probs=691.8
Q ss_pred ChhHHHHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh------------------------c
Q 004119 8 DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT------------------------I 63 (773)
Q Consensus 8 ~~~~~~~~f~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~------------------------l 63 (773)
.|++++++|.+|||||+||+||+||++|+++|..+|.++++.++|++..|+|||+ |
T Consensus 2 ~~~dl~~~f~~lGlse~k~~etlKn~kvs~~l~~~i~~a~~~~~~~~~~g~Lly~lAt~~~~q~~~~~~llv~yI~~~~i 81 (764)
T KOG1148|consen 2 AMEDLIALFTSLGLSEKKVKETLKNKKVSANLEKIIKEADVSSGCDRTTGNLLYTLATKLKPQKLAHLPLLVSYIVNGKI 81 (764)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHhHHHHHHHHHHHHHhcccccccccccchhHHHHHhhcCccccccchHHHHHHHhccc
Confidence 5789999999999999999999999999999999999999988899999999999 9
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCCCCC
Q 004119 64 KTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWAD 143 (773)
Q Consensus 64 ks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~LkWAd 143 (773)
||++||+||++|++++ +++..+|+++|||||+||+|||+++|.++|++|++.|+++||+||.| |+|.||+.|||||
T Consensus 82 kt~~ql~aa~~Y~~~~---~~~~~~fe~ecgvgvvvtpeqie~~V~~~i~~~k~~il~eRy~~~~g-l~~~~R~~LkwAD 157 (764)
T KOG1148|consen 82 KTELQLDAALEYVKSH---TLDKKDFEKECGVGVVVTPEQIEEAVRKYIAENKEKILEERYHFNKG-LFGDVRKELKWAD 157 (764)
T ss_pred CchHHHHHHHHHHhcc---ccchhhhhhhcCccEEECHHHHHHHHHHHHHHhHHHHHHHHHhcchh-hHHHHHhhcCCCC
Confidence 9999999999999984 57889999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhccCCCcchhhcc-----ccCCCCCCCCccccCCCCCCCCCCCCcc
Q 004119 144 PKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKK-----FANDAPVQLPEEDLFPISNFPPPEENYK 218 (773)
Q Consensus 144 ~k~vK~~vd~~~~~llgpk~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 218 (773)
++.||++||+++++||||||++|++++.|++++ +.++++.+.+++ ++....+++.|+|+. +||+||||.|
T Consensus 158 ~~~vk~~iD~~~l~LlGpkte~dl~~~~k~~k~--~~~k~~~~~~~~~~~~e~~s~~~~~~~e~~~~---~~hk~gent~ 232 (764)
T KOG1148|consen 158 PKSVKKEIDKEVLELLGPKTEADLEKKKKKKKA--EGEKKKTVSAKKAKNQEAASDKAPQIEELFLT---KFHKPGENTQ 232 (764)
T ss_pred HHHHHHHHhhHHHHhcCccchhhcccccccccc--cccccccccCCCCCchhhhcccccchhhhhhh---hcccCCCCcc
Confidence 999999999999999999999999988666422 222222222211 112335688899998 9999999966
Q ss_pred cccccccCCCcceeecCcHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccch
Q 004119 219 VHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEK 298 (773)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~ 298 (773)
+|+++|++||+.|||+|+|||||+|||+||||||+|+.+||+||+.+||.|+||||||||+++.
T Consensus 233 ----------------~t~ellk~HL~~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEe 296 (764)
T KOG1148|consen 233 ----------------HTEELLKEHLERTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEE 296 (764)
T ss_pred ----------------chHHHHHHHHHhhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhh
Confidence 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhh-ccCCCCCCCCCHHHHhHHHH
Q 004119 299 KEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE-KKMNSPWRDRPIAESLKLFE 377 (773)
Q Consensus 299 ~e~~~~I~edL~wLGi~pd~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~-~~~~~~~R~~s~ee~l~~f~ 377 (773)
++|+++|.++++|||++|++++|+||||+++|++|.+||++|+||+|||+.|||++.|+ ...+|+||+|++||||++|+
T Consensus 297 e~yf~sI~e~V~WLG~~P~kvTysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~~~spwRdRPieEsL~lF~ 376 (764)
T KOG1148|consen 297 EEYFESIKEMVAWLGFEPYKVTYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFNERLSPWRDRPIEESLRLFE 376 (764)
T ss_pred HHHHHHHHHHHHHhCCCceeeecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCCCCCCccccCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 33479999999999999999
Q ss_pred HhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchH
Q 004119 378 DMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRA 457 (773)
Q Consensus 378 ~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~ 457 (773)
+|+.|++++|+++||||++++++|++|+|+|+||+.+.||||+|++||||||||||||++||+++|||++|+.||.+++.
T Consensus 377 ~Mr~Gk~~eGeAtLRmK~dl~~~~p~m~DlvayRik~~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR~ 456 (764)
T KOG1148|consen 377 DMRDGKYEEGEATLRMKQDLESGNPQMWDLVAYRIKNVPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRRS 456 (764)
T ss_pred HHhcCCcCcChhheeeeeeccCCCccccccceeeeecCCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCceeeeeeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCC
Q 004119 458 SYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD 537 (773)
Q Consensus 458 ~q~~L~~aLg~~~P~~w~f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~ 537 (773)
+|+|||++|++|+|.||+|||||++|++|||||+.+||++|+|+||||||++||.+|||||++|+||++||+.+|+|.++
T Consensus 457 SY~WLcnaL~iY~P~qwEYgRLNv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a~ 536 (764)
T KOG1148|consen 457 SYYWLCNALEIYCPVQWEYGRLNVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTAQ 536 (764)
T ss_pred hHHHHHhhhhcccchhhhhceeeeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHhHHHHHHHHhhhcCCCceeeEecceeEEEEeCCCCceeeeecccCCCCCCCCCCceeEecccceEEEecCccccc
Q 004119 538 SLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMK 617 (773)
Q Consensus 538 ~~~~~~~Le~~~r~~~~~~~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~ 617 (773)
++++...||+++|++++.++||.|+|++|+||+|+|+++++...+++|++|. +|.+|.|+|||++.||||++||+++
T Consensus 537 ~~i~v~~lE~~VRd~Ln~tapR~M~VleplkVti~N~~~~~~~~i~iPd~P~---dp~~g~~~Vpft~vIYIErSDFkee 613 (764)
T KOG1148|consen 537 TTIDVARLEAAVRDYLNDTAPRLMFVLEPLKVTIENLSDDYPESIEIPDFPG---DPTSGFHKVPFTRVIYIERSDFKEE 613 (764)
T ss_pred ceecHHHHHHHHHHHHhccCcceEEeecceEEEEecCCcchhhhccCCCCCC---CCccccccccccceEEEEccccccc
Confidence 9999999999999999999999999999999999999999989999999998 8999999999999999999999999
Q ss_pred CCccccCcCCCCEEEEeeee-eEEEeEeeecCCCCCEEEEEEEEcC-CCCCCCCeeEEeccCCCCCCCCeeEEEEecccc
Q 004119 618 DSKDYYGLAPGKSVLLRYAF-PIKCTEVILSDDKETILHIRAEYDP-SKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKL 695 (773)
Q Consensus 618 ~~~~~~rl~~g~~v~l~~~~-~i~~~~~~~~~~~g~v~e~~~~~~~-~~~~K~k~~I~Wv~~~~~~~~~v~~evr~y~~L 695 (773)
++|+|+||+|||+|+|+|.+ +|.+..|. +|++|.|+||+++||+ +.++|||++|||||+ +|+.||||+|++|
T Consensus 614 ~dK~f~RLtpgQpVGLr~~~~vi~~~~vv-kD~~g~v~ei~v~yd~~s~~~KPK~fIhWVse-----~Pv~vEvRlye~L 687 (764)
T KOG1148|consen 614 DDKDFFRLTPGQPVGLRYAGYVIRVVKVV-KDDEGTVIEIHVEYDPASKKKKPKAFIHWVSE-----SPVKVEVRLYEQL 687 (764)
T ss_pred CCcchhccCCCCcceeEeecceEEEEEEe-eCCCCceEEEEEEecccccccCCceeEEeccC-----CCeEeehhHHHHH
Confidence 99999999999999999985 45555555 9999999999999998 566899999999996 4999999999999
Q ss_pred CCCCCCCCc-cCccccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEecCCCCCCeeEeeecCCCCCCCCC
Q 004119 696 FNSENPAEL-DDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKG 771 (773)
Q Consensus 696 f~~~~p~~~-~~~l~~iN~~S~~v~~~~~~e~~~~~~~~~~~~QfeR~Gyf~vD~~~~~~~~v~n~~v~lk~~~~k~ 771 (773)
|+++||++. +.||+||||+|+.|+.+|++|..+...+++|+|||||+||||||+||+.++|||||||+|||++||+
T Consensus 688 Fks~NP~d~~e~fLsDiNp~S~~V~~~a~~D~~~~~a~v~DrFQfeRiGYF~VDkDSt~~kLVfNRtV~LKd~~gk~ 764 (764)
T KOG1148|consen 688 FKSENPADLNEVFLSDINPDSLVVVKGALADKSISDAKVYDRFQFERIGYFCVDKDSTPGKLVFNRTVTLKDDSGKK 764 (764)
T ss_pred hccCCccchhHHHHHhcCccchhhhhhhhhhhhhcccchhhhHhhhhcceeEecCCCCCceEEEEeEEEeccCCCCC
Confidence 999999986 6799999999999999999999999999999999999999999999999999999999999998874
No 2
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=1.4e-212 Score=1819.27 Aligned_cols=761 Identities=83% Similarity=1.315 Sum_probs=727.9
Q ss_pred CChhHHHHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh------------------------
Q 004119 7 GDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT------------------------ 62 (773)
Q Consensus 7 ~~~~~~~~~f~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~------------------------ 62 (773)
..+++++++|++|||||+||+||+||++|+++|..+|++|++..+||+++|+|||+
T Consensus 3 ~~~~~~~~~f~~IGL~e~kAketlKN~klt~~L~~iI~ea~~~~~~dk~~g~LLy~LAtk~~~~~~~~r~~lv~~I~~gk 82 (788)
T PLN02859 3 ANSEKPLELFLKIGLDERTARNAIANNKVTSNLTAVIHEAGVTNGCDKTVGNLLYTVATKYPANALVHRPTLLSYIVSSK 82 (788)
T ss_pred CccHHHHHHHHHcCCChHHHHHHHhCHHHHHHHHHHHHhcCCccCCChHHHHHHHHHHHhcCCccchhHHHHHHHHHhCC
Confidence 46778999999999999999999999999999999999999987899999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCCCC
Q 004119 63 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWA 142 (773)
Q Consensus 63 lks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~LkWA 142 (773)
|||++||+||++|+++++.+++|.++|+++|||||+||+|||+++|++||++|+++|+++||++|+|.||++||+.||||
T Consensus 83 IkT~~Ql~AA~kYl~~~~~~~~d~~~Fek~CGVGV~VT~EqI~~~V~~~i~~~k~~il~~RY~~n~g~ll~~~r~~Lkwa 162 (788)
T PLN02859 83 IKTPAQLEAAFSFFSSTGPESFDLNKFEEACGVGVVVSPEDIEAAVNEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWA 162 (788)
T ss_pred CCCHHHHHHHHHHHHhCCCCccCHHHHHHhCCCCEEECHHHHHHHHHHHHHhhHHHHHHhcccccHHHHHHHHHhhCCCC
Confidence 99999999999999999877899999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhccCCCcchhhccccCCCCCCCCccccCCCCCCCCCCCCcccccc
Q 004119 143 DPKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKVHTE 222 (773)
Q Consensus 143 d~k~vK~~vd~~~~~llgpk~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (773)
|++.||++||+++++||||||++|.+|++|+++ +++++++++ ......++|++||+++++.||+||||++++..
T Consensus 163 d~~~~k~~id~~~~~llg~k~~~d~~~~~k~~k-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~en~~~~~~ 236 (788)
T PLN02859 163 DPKIVKKLIDKKLYELLGEKTAADNEKPVKKKK-----EKPAKVEEK-KVAVAAAPPSEEELNPYSIFPQPEENFKVHTE 236 (788)
T ss_pred CHHHHHHHHHHHHHHhcCCcchhhhcccccccc-----ccccccccc-cccccccccchhhccccccCCCccccccccce
Confidence 999999999999999999999999886554421 111111111 11234589999999999999999999999999
Q ss_pred cccCCCcceeecCcHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHH
Q 004119 223 IPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYI 302 (773)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~h~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~ 302 (773)
+++++|+++.++||+++|++||++++|+|+|||||||||||||||||+|++||+|||++||+|+||||||||+|+.++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~hl~~t~g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~ 316 (788)
T PLN02859 237 VFFSDGSVLRPSNTKEILEKHLKATGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYI 316 (788)
T ss_pred eeccccccccccCcHHHHHHHHhhcCCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcC
Q 004119 303 DHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNG 382 (773)
Q Consensus 303 ~~I~edL~wLGi~pd~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G 382 (773)
++|+++|+|||++|++++|||+||+.+|++|.+||++|+||+|+||+++|++.|+.+.+|+||+++++|+|.+|++|++|
T Consensus 317 ~~I~edL~WLG~~~d~~~~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g 396 (788)
T PLN02859 317 DHIEEIVEWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRG 396 (788)
T ss_pred HHHHHHHHHcCCCCCCcccccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHH
Q 004119 383 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWL 462 (773)
Q Consensus 383 ~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L 462 (773)
.+.+|++|||||+||.++|++|+|+|+||+.+.+||++|++|++|||||||||||||+|||||||||.||++|+++|.||
T Consensus 397 ~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl 476 (788)
T PLN02859 397 LIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWL 476 (788)
T ss_pred hhccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCceeeeeeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCc-ccc
Q 004119 463 LHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS-LIR 541 (773)
Q Consensus 463 ~~aLg~~~P~~w~f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~-~~~ 541 (773)
+++|||+.|.+|||+|||++|++||||++.+||++|+|+||||||++||++||||||+|+||+|||+.+|||..++ .++
T Consensus 477 ~~aLg~~~P~~~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~ 556 (788)
T PLN02859 477 LDSLGLYQPYVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIR 556 (788)
T ss_pred HHHcCCCCCcEEeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988 899
Q ss_pred HhHHHHHHHHhhhcCCCceeeEecceeEEEEeCCCCceeeeecccCCCCCCCCCCceeEecccceEEEecCcccccCCcc
Q 004119 542 LDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKD 621 (773)
Q Consensus 542 ~~~Le~~~r~~~~~~~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~ 621 (773)
++.|++++|+.+++.++|+|||+||+||+|+|+|++..+.+.+|.||.+|.++++|+|.|+|++.||||++||++.++++
T Consensus 557 ~~~Le~~~r~~l~~~a~R~maV~dp~kv~i~n~~~~~~~~~~~~~~P~~p~~~~~g~r~v~f~~~iyIe~~D~~~~~~~~ 636 (788)
T PLN02859 557 MDRLEHHIREELNKTAPRTMVVLHPLKVVITNLESGEVIELDAKRWPDAQNDDPSAFYKVPFSRVVYIERSDFRLKDSKD 636 (788)
T ss_pred HHHHHhhCHHhhCCcCcchheecCCeEEEEecCCCCceeecccccCCCCCCCccCceEEEEECCeEEEEhHHhhcccccc
Confidence 99999999999999999999999999999999999888889999999988899999999999999999999999999999
Q ss_pred ccCcCCCCEEEEeeeeeEEEeEeeecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCC
Q 004119 622 YYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENP 701 (773)
Q Consensus 622 ~~rl~~g~~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~~~K~k~~I~Wv~~~~~~~~~v~~evr~y~~Lf~~~~p 701 (773)
|+||+||++|+|+|+|+|+|++++.+|++|+|++|+|+|+++...|||++|||||+++++.++++||+|+|++||++++|
T Consensus 637 ~~rL~pg~~V~L~~~~~i~~~~~~~~d~~g~v~el~~~~d~~~~~K~k~~ihWvs~~~~~~~~~~~e~r~yd~Lf~~~~p 716 (788)
T PLN02859 637 YYGLAPGKSVLLRYAFPIKCTDVVLADDNETVVEIRAEYDPEKKTKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLSENP 716 (788)
T ss_pred ceecCCCCEEEEcceeEEEEEEEEEeCCCCCEEEEEEEEccCCCCccCceEEeeecCCCCCCceeEEEEeehhhcCCCCC
Confidence 99999999999999999999998767889999999999999877899999999998655667899999999999999999
Q ss_pred CCccCccccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEecCCCCCCeeEeeecCCCCCCCCCCC
Q 004119 702 AELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKGGK 773 (773)
Q Consensus 702 ~~~~~~l~~iN~~S~~v~~~~~~e~~~~~~~~~~~~QfeR~Gyf~vD~~~~~~~~v~n~~v~lk~~~~k~~~ 773 (773)
++.++|+++|||+|+.++.+|++|+++.++++|++|||||.||||||+||+++++||||||+||++++|..|
T Consensus 717 ~~~~~~~~~iNp~S~~v~~~a~~e~~~~~~~~~~~~QfeR~GYF~~D~ds~~~~~vfNr~v~Lkd~~~k~~~ 788 (788)
T PLN02859 717 AELEDWLEDLNPQSKEVISGAYAVPSLKDAKVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSYGKGGK 788 (788)
T ss_pred cccccHHHhCCCCccEEEeceEEcHhHhhCCCCCeEEEEeeeEEeccCCCCCCCeEEEeeeeccccccccCC
Confidence 988899999999999999889999999999999999999999999999999999999999999999999765
No 3
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.4e-153 Score=1285.81 Aligned_cols=544 Identities=48% Similarity=0.864 Sum_probs=520.6
Q ss_pred CCCCCCCCCCcccccccccCCCcceeecCcHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEE
Q 004119 207 ISNFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCY 286 (773)
Q Consensus 207 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~i 286 (773)
.+.||..+++... +|+ .|+|+++++|+..++|+|+|||||||||||||||||+|++||+|||++||+|+
T Consensus 19 ~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~i 87 (574)
T PTZ00437 19 KRDLSLLQTGRPV-------PGC----RNTPELLEKHEAVTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCY 87 (574)
T ss_pred ccchhhhcccCCC-------ccc----CCCHHHHHHHhcccCCcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEE
Confidence 3466666666543 333 68999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCC
Q 004119 287 LRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRD 366 (773)
Q Consensus 287 LRidDTDp~r~~~e~~~~I~edL~wLGi~pd~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~ 366 (773)
||||||||+|+.++|+++|+++|+|||++||++++||+||+.||++|++||++|+||+|+||+++|++.|..+.+|+||+
T Consensus 88 LRiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~~~~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~~~~~~R~ 167 (574)
T PTZ00437 88 LRYDDTNPETEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQREDSPWRN 167 (574)
T ss_pred EEECCCCccccChHHHHHHHHHHHHcCCCCCCCCcCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHHHhhcccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCccee
Q 004119 367 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHS 446 (773)
Q Consensus 367 ~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHv 446 (773)
+++||||++|++|++|.+.+|++|||+|+||.++|++|+|+|+||+.+.+||++||+|+||||||||||||||+||||||
T Consensus 168 ~~~eenL~lfe~M~~g~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~~iyPtYdFa~~vdD~l~gITHv 247 (574)
T PTZ00437 168 RSVEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYS 247 (574)
T ss_pred CCHHHHHHHHHHHhhcccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCceEEEccCcccceeechhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccchHHHHHHHHHhCCCCCceeeeeeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHH
Q 004119 447 LCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 526 (773)
Q Consensus 447 iRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~ 526 (773)
|||.||.+|++.|+||+++|+++.|.+|+|+|||++|++||||++.+||++|+|+||||||++||++||||||+|+||++
T Consensus 248 lct~Ef~~r~~~y~wl~~~l~l~~p~~~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~ 327 (574)
T PTZ00437 248 LCTLEFETRRESYFWLLEELNLWRPHVWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINR 327 (574)
T ss_pred eeechhhcccHHHHHHHHHhCCcccceEeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCccccHhHHHHHHHHhhhcCCCceeeEecceeEEEEeCCCCceeeeecccCCCCCCCCCCceeEecccce
Q 004119 527 FVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNV 606 (773)
Q Consensus 527 fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~ 606 (773)
||..+|||++++.++|+.||+++|+.+++.++|+|||+||++|+|+|++.. ..+++|+||+ +|++|+|.++|++.
T Consensus 328 f~~~~G~sk~~~~i~~~~Le~~nR~~ld~~a~R~~~V~dPv~v~I~n~~~~--~~~~~p~hP~---~~~~G~R~i~~~~~ 402 (574)
T PTZ00437 328 FCELVGITRSMNVIQISMLENTLREDLDERCERRLMVIDPIKVVVDNWKGE--REFECPNHPR---KPELGSRKVMFTDT 402 (574)
T ss_pred HHHHhCCCccceEeeHHHHHHHHHHHhcccCccceEEccceEEEEecCCCc--eEEeccCCCC---CCcCceEEEEEcCe
Confidence 999999999999999999999999999999999999999999999998754 5678899988 79999999999999
Q ss_pred EEEecCccc-ccCCccccCcCCCC-EEEEeeeeeEEEeEeeecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCC
Q 004119 607 VYIEHSDFR-MKDSKDYYGLAPGK-SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNP 684 (773)
Q Consensus 607 iyIe~~D~~-~~~~~~~~rl~~g~-~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~~~K~k~~I~Wv~~~~~~~~~ 684 (773)
||||++||+ +.++++|+||+||+ .|+|++++||+|+++. +|++|+|++++|.++++..+|+|++|||||+ .++
T Consensus 403 iyIe~~D~~~~~~~~~f~rL~~g~~~vrL~~~~~i~~~~~~-~d~~g~v~~~~~~~d~~~~~k~k~~IhWvs~----~~~ 477 (574)
T PTZ00437 403 FYVDRSDFRTEDNNSKFYGLAPGPRVVGLKYSGNVVCKGFE-VDAAGQPSVIHVDIDFERKDKPKTNISWVSA----TAC 477 (574)
T ss_pred EEEEHHHhhcccccccceecCCCCeEEEeccEEEEEEEEEE-ECCCCCEEEEEEEecccccccCCCeEEEeec----CCc
Confidence 999999998 66789999999997 8999999999999998 8889999999999999877889999999997 468
Q ss_pred eeEEEEeccccCCCCCCCCccCccccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEecCCCCCCeeEeeecCC
Q 004119 685 LRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTL 764 (773)
Q Consensus 685 v~~evr~y~~Lf~~~~p~~~~~~l~~iN~~S~~v~~~~~~e~~~~~~~~~~~~QfeR~Gyf~vD~~~~~~~~v~n~~v~l 764 (773)
++|+||+|++||++++|+..++|+++|||+|+.+. .||+|+++.++++|++|||||+|||+||+||+++++||||||+|
T Consensus 478 v~~evr~Yd~Lf~~~~p~~~~~~~~~iNp~s~~~~-~g~~E~~~~~~~~~~~~QfeR~Gyf~vD~ds~~~~~vfNr~v~L 556 (574)
T PTZ00437 478 TPVEVRLYNALLKDDRAAIDPEFLKFIDEDSEVVS-HGYAEKGIENAKHFESVQAERFGYFVVDPDTRPDHLVMNRVLGL 556 (574)
T ss_pred eeEEEEeccccccCCCCCccccHhhhCCCCceEEE-EEEEchhhhhCCCCCeEEEEEeEEEEeCCCCCCCCEEEEeeeEc
Confidence 99999999999999999988899999999999987 59999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 004119 765 KDSFPKGG 772 (773)
Q Consensus 765 k~~~~k~~ 772 (773)
|++++|.+
T Consensus 557 kd~~~K~~ 564 (574)
T PTZ00437 557 REDKEKAT 564 (574)
T ss_pred cccccccc
Confidence 99988753
No 4
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.6e-149 Score=1259.80 Aligned_cols=526 Identities=54% Similarity=0.925 Sum_probs=502.8
Q ss_pred HHHHHHhhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCC
Q 004119 237 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 315 (773)
Q Consensus 237 ~~~~~~h~~~~-~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~ 315 (773)
.+++.+.++.. .|+|+|||||||||||||||||+|++||+|||++||+|+||||||||+|+.++|+++|+++|+|||++
T Consensus 15 ~~~~~~dl~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLGi~ 94 (554)
T PRK05347 15 RQIIDEDLASGKHTRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFD 94 (554)
T ss_pred HHHHHhHHhcCCcCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHHcCCC
Confidence 44566666553 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhc----cCCCCCCCCCHHHHhHHHHHhhcCcccCCceE
Q 004119 316 P-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK----KMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 390 (773)
Q Consensus 316 p-d~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~----~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~ 390 (773)
| ++++|||+||+.||++|++||++|+||+|+||+|+|++.|+. +++|+||++|+||++++|++|++|.+.+|++|
T Consensus 95 ~d~~~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~g~~v 174 (554)
T PRK05347 95 WSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPEGSAV 174 (554)
T ss_pred CCCCceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCCCcEE
Confidence 9 468999999999999999999999999999999999999974 88999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCC-C
Q 004119 391 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-Y 469 (773)
Q Consensus 391 lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~-~ 469 (773)
||+|+|+.++|++|+|+|+||+.+.+||++|++|++|||||||||||||+|||||||||.||++|+++|.||+++||+ +
T Consensus 175 lR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~alg~~~ 254 (554)
T PRK05347 175 LRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPP 254 (554)
T ss_pred EEEEeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCceeeeeeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHH
Q 004119 470 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 549 (773)
Q Consensus 470 ~P~~w~f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~ 549 (773)
.|.+|+|+|||++|++||||++.+||++|+|+||||||++||++||||||+|+||++||+.+|||..+..++|+.||+++
T Consensus 255 ~P~~~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~n 334 (554)
T PRK05347 255 HPRQYEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCI 334 (554)
T ss_pred CCceEEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCceeeEecceeEEEEeCCCCceeeeecccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCC
Q 004119 550 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGK 629 (773)
Q Consensus 550 r~~~~~~~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~rl~~g~ 629 (773)
|+.+++.+||+|||+||++|.|+|+++...+.+++|+||+ +|++|+|.++|+++||||++||++.++++|+||+||+
T Consensus 335 Rk~ld~~a~R~m~V~~pv~v~i~n~~~~~~~~~~~p~hP~---~~~~G~r~i~~~~~iyIe~~D~~~~~~~~~~rl~~g~ 411 (554)
T PRK05347 335 REDLNENAPRAMAVLDPLKLVITNYPEGQVEELEAPNHPE---DPEMGTREVPFSRELYIEREDFMEEPPKKYFRLVPGK 411 (554)
T ss_pred HHHhccCCCceEEEcCCeEEEEEeCCCCceEEEEecCCCC---CCcCceEEEEEcCeEEEEhHHhhccccccccccCCCC
Confidence 9999999999999999999999999887777889999998 7999999999999999999999999999999999999
Q ss_pred EEEEeeeeeEEEeEeeecCCCCCEEEEEEEEcCC-------CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCC
Q 004119 630 SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPS-------KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPA 702 (773)
Q Consensus 630 ~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~-------~~~K~k~~I~Wv~~~~~~~~~v~~evr~y~~Lf~~~~p~ 702 (773)
+|+|+++++|+|+++. +|.+|.|++++|+|+++ ..+|+|++|||||+ .++++|+||+|++||++++|+
T Consensus 412 ~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~~~g~~~~~kk~k~~IhWv~~----~~~v~~~v~~yd~Lf~~~~p~ 486 (554)
T PRK05347 412 EVRLRNAYVIKCEEVV-KDADGNITEIHCTYDPDTLSGNPADGRKVKGTIHWVSA----AHAVPAEVRLYDRLFTVPNPA 486 (554)
T ss_pred EEEecCEEEEEEEEEE-EcCCCCEEEEEEEEccccccCCCccCcccCCEEEeeec----CCCEeEEEEEeccccCCCCCC
Confidence 9999999999999998 88999999999999875 23688899999997 468999999999999999999
Q ss_pred CccCccccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEecCCCCCCeeEeeecCCCCCCCCC
Q 004119 703 ELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKG 771 (773)
Q Consensus 703 ~~~~~l~~iN~~S~~v~~~~~~e~~~~~~~~~~~~QfeR~Gyf~vD~~~~~~~~v~n~~v~lk~~~~k~ 771 (773)
+.++|+++|||+|+.+. .|++|+++.++++|++|||||+|||+||++++++++||||||+||++++|.
T Consensus 487 ~~~~~~~~iN~~s~~~~-~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~v~n~~v~l~d~~~k~ 554 (554)
T PRK05347 487 AGKDFLDFLNPDSLVIK-QGFVEPSLADAKPEDRFQFEREGYFCADKDSTPGKLVFNRTVGLRDSWAKI 554 (554)
T ss_pred ccccHhHhcCCCceEEE-eEEEcHHHhhCCCCCEEEEEEeeEEEecCCCCCCCeEEEeeeecccccCCC
Confidence 88999999999999765 799999999999999999999999999999999999999999999998874
No 5
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=2.1e-145 Score=1272.23 Aligned_cols=528 Identities=46% Similarity=0.857 Sum_probs=506.3
Q ss_pred HHHHHHhhhh-cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCC
Q 004119 237 KEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 315 (773)
Q Consensus 237 ~~~~~~h~~~-~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~ 315 (773)
.+++++|++. ..|+|+|||||||||||||||||+|++||+|||++||+|+||||||||+|+.++|+++|+++|+|||++
T Consensus 17 ~~~~~~~l~~g~~~~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~wLG~~ 96 (771)
T PRK14703 17 TEIIEEDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFD 96 (771)
T ss_pred HHHHHHHHhcCCCCceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHHcCCC
Confidence 6789999998 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhh----ccCCCCCCCCCHHHHhHHHHHhhcCcccCCceE
Q 004119 316 PFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 390 (773)
Q Consensus 316 pd~-~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~----~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~ 390 (773)
||+ ++|||+||+.||++|++||++|+||+|+||+++|++.|+ .+++|+||++|++|++.+|++|++|.+.+|++|
T Consensus 97 wd~~~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g~~v 176 (771)
T PRK14703 97 WGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHV 176 (771)
T ss_pred CCCCceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCCCeE
Confidence 986 699999999999999999999999999999999999997 689999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCC-
Q 004119 391 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY- 469 (773)
Q Consensus 391 lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~- 469 (773)
||+|++|.++|++|+|+|+||+...+||++||+||+|||||||||||||+|||||||||+||.+|++.|.||+++||+.
T Consensus 177 lR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~l~~~l~~~~ 256 (771)
T PRK14703 177 LRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWP 256 (771)
T ss_pred EEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999653
Q ss_pred -CCceeeeeeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHH
Q 004119 470 -QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 548 (773)
Q Consensus 470 -~P~~w~f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 548 (773)
.|.+|+|+|||+.|++||||++.+||++|+|+||||||++||++||||||+|+||++||..+|||+.++.++|+.||++
T Consensus 257 ~~P~~~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~ 336 (771)
T PRK14703 257 PRPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFA 336 (771)
T ss_pred CCcceeEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCceeeEecceeEEEEeCCCCceeeeecccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCC
Q 004119 549 IREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPG 628 (773)
Q Consensus 549 ~r~~~~~~~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~rl~~g 628 (773)
+|+.+++.+||+|||+||++|+|+|++++....+.+|+||++ .|++|+|.|+|+++||||++||++.++++|+||+||
T Consensus 337 ~R~~ld~~a~R~~~V~~p~~v~i~n~~~~~~~~~~~p~hp~~--~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g 414 (771)
T PRK14703 337 IRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEELDLPYWPHD--VPKEGSRKVPFTRELYIERDDFSEDPPKGFKRLTPG 414 (771)
T ss_pred HHHHhccCCCceEEEcCCeEEEEEeCCCCceEEEeccCCCCC--CccCceEEEEEcCeEEEEhhHhhccccccccccCCC
Confidence 999999999999999999999999999877788999999982 289999999999999999999999999999999999
Q ss_pred CEEEEeeeeeEEEeEeeecCCCCCEEEEEEEEcCCC------CCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCC
Q 004119 629 KSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSK------KTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPA 702 (773)
Q Consensus 629 ~~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~------~~K~k~~I~Wv~~~~~~~~~v~~evr~y~~Lf~~~~p~ 702 (773)
++|+|+++|+|+|+++. +|++|.|++++|+|+++. .+|++++|||||+ .++++|+||+|++||++++|+
T Consensus 415 ~~vrL~~~~~i~~~~~~-kd~~G~v~~~~~~~~~~~~~~~~~~~k~k~~ihWv~~----~~~v~~~vr~Yd~Lf~~~~p~ 489 (771)
T PRK14703 415 REVRLRGAYIIRCDEVV-RDADGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSA----KHALPAEVRLYDRLFKVPQPE 489 (771)
T ss_pred CEEEecceEEEEEEEEE-EcCCCCEEEEEEEEeCCCcCCCccCCcCCcEEEEeec----CCCeeEEEEecccccCCCCCC
Confidence 99999999999999998 889999999999998763 3678999999997 468999999999999999998
Q ss_pred -CccCccccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEec-CCCCCCeeEeeecCCCCCCCCCC
Q 004119 703 -ELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEKLVFNRTVTLKDSFPKGG 772 (773)
Q Consensus 703 -~~~~~l~~iN~~S~~v~~~~~~e~~~~~~~~~~~~QfeR~Gyf~vD~-~~~~~~~v~n~~v~lk~~~~k~~ 772 (773)
..++|+++|||+|+.++ .||+||++.++++|++|||||+|||+||+ ||+++++||||||+||++++|.+
T Consensus 490 ~~~~~~~~~lN~~Sl~~~-~g~~e~~~~~~~~~~~~QfeR~Gyf~~D~~d~~~~~~vfNr~v~lkd~~~~~~ 560 (771)
T PRK14703 490 AADEDFLEFLNPDSLRVA-QGRVEPAVRDDPADTRYQFERQGYFWADPVDSRPDALVFNRIITLKDTWGARA 560 (771)
T ss_pred ccccchHhhcCCCCceeE-ccEEcHhHhhCCCCCEEEEEEeEEEEEccCCCCCCCeEEEeecccCccccccc
Confidence 45899999999999998 58999999999999999999999999996 78899999999999999998654
No 6
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=3e-145 Score=1225.20 Aligned_cols=508 Identities=51% Similarity=0.874 Sum_probs=488.0
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCC-CcCCCchhHHHH
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQEL 329 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd-~~~~qSd~~~~~ 329 (773)
|+|||||||||+|||||||+|++||+|||++||+|+||||||||+|+.++|+++|+++|+|||++|| .+++||+||+.|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~ 80 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGKIRYSSDYFDEL 80 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCCceEccccHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999995 579999999999
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhhh----ccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcC
Q 004119 330 YELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 405 (773)
Q Consensus 330 y~~a~~LI~~G~AY~C~cs~eel~~~R~----~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~ 405 (773)
|++|++||++|+||+|+||+|+|++.|+ ++|+|+||++|+||++++|++|++|.+++|++|||+|+|+.+++++|+
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~~r 160 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMR 160 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCceEe
Confidence 9999999999999999999999999995 689999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCC-CCceeeeeeccCCCc
Q 004119 406 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNT 484 (773)
Q Consensus 406 D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~-~P~~w~f~~Ln~~g~ 484 (773)
|+|+||+.+.+|+++|++|++|||||||||||||+|||||||||+||++|++.|.||+++++++ .|.+|+|+|||++|+
T Consensus 161 D~V~~Ri~~~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~~F~rln~~~~ 240 (522)
T TIGR00440 161 DPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGT 240 (522)
T ss_pred eeeEEEEecCCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCCCceEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred eecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcCCCceeeEe
Q 004119 485 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 564 (773)
Q Consensus 485 kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~ 564 (773)
|||||++.++|++|+|+||||||++||++||||||+|+||+|||+.||||+++..++++.|++++|+|++++++|+|||+
T Consensus 241 kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~~~~~r~~av~ 320 (522)
T TIGR00440 241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLNENAPRAMAVI 320 (522)
T ss_pred CcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhhhhcCccccccc
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred cceeEEEEeCCCCceeeeecccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeeeeeEEEeEe
Q 004119 565 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 644 (773)
Q Consensus 565 dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~rl~~g~~v~l~~~~~i~~~~~ 644 (773)
||.||+|.|++... +..++|+||+ ++++|+|.++|++.||||++||++.++++|+||+||++|+|+++|+|+|+++
T Consensus 321 d~~kl~i~~~~~~~-~~~~~p~~p~---~~~~g~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~vrL~~~~~i~~~~~ 396 (522)
T TIGR00440 321 DPVEVVIENLSDEY-ELATIPNHPN---TPEFGERQVPFTNEFYIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERV 396 (522)
T ss_pred ccceEEEecCCCCc-eEEeccCCCC---ChhHeeEEEEecceeEEEHHHhhccccccccccCCCCEEEeCCEEEEEEEEE
Confidence 99999999998653 3567888888 7899999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCEEEEEEEEcCC-------CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCce
Q 004119 645 ILSDDKETILHIRAEYDPS-------KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKV 717 (773)
Q Consensus 645 ~~~~~~g~v~e~~~~~~~~-------~~~K~k~~I~Wv~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~l~~iN~~S~~ 717 (773)
+ +|++|.|++++|+|+++ ..+|+|++|||||+ .++++||+|+|++||++++|++.++|++++||+|+.
T Consensus 397 ~-~d~~G~v~~~~~~~~~~~~~~~~~~~kk~k~~IhWv~~----~~~~~~evr~yd~Lf~~~~p~~~d~~~~~~np~s~~ 471 (522)
T TIGR00440 397 E-KDAAGKITTIFCTYDNKTLGKEPADGRKVKGVIHWVSA----SSKYPTETRLYDRLFKVPNPGAPDDFLSVINPESLV 471 (522)
T ss_pred E-ecCCCCEEEEEEEEccccccCCccccccCCcEEEeeec----CCCeeEEEEecccccCCCCCCccccHhhhCCCCceE
Confidence 8 88899999999999874 23788999999997 468999999999999999999989999999999998
Q ss_pred eecceEeccccccCCCCCeEEEEEeeeEEEe-cCCCCCCeeEeeecCCCCCC
Q 004119 718 VIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSF 768 (773)
Q Consensus 718 v~~~~~~e~~~~~~~~~~~~QfeR~Gyf~vD-~~~~~~~~v~n~~v~lk~~~ 768 (773)
+. .|++|+++.++++|++|||||+|||||| .+|+++++||||||+||+++
T Consensus 472 ~~-~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~v~Nr~v~l~d~~ 522 (522)
T TIGR00440 472 IK-QGFMEHSLGDAVANKRFQFEREGYFCLDSKESTTEKVVFNRTVSLKDAT 522 (522)
T ss_pred EE-EEEEchhHhhCCCCCEEEEEEeEEEEEccCCCCCCCeEEEeeeecCCCC
Confidence 76 6999999999999999999999999999 47889999999999999975
No 7
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=9.5e-138 Score=1162.94 Aligned_cols=501 Identities=33% Similarity=0.530 Sum_probs=470.6
Q ss_pred hcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchh
Q 004119 246 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 325 (773)
Q Consensus 246 ~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~~~~qSd~ 325 (773)
+++|+|+|||||||||||||||||+|++||+|||++||+|+||||||||+|+.++|+++|+++|+|||++||+++|||+|
T Consensus 7 a~~g~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~~~~qSdr 86 (523)
T PLN03233 7 AIAGQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDSVSFTSDY 86 (523)
T ss_pred CCCCeEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCCCcccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcC
Q 004119 326 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 405 (773)
Q Consensus 326 ~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~ 405 (773)
|+.||++|++||++|+||+|+||+|||++.|+.+++|+||+++++|++++|++|++|.+.+|++++|+|+++.+++.+|+
T Consensus 87 ~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~ 166 (523)
T PLN03233 87 FEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLR 166 (523)
T ss_pred HHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCCCCc
Confidence 99999999999999999999999999999999899999999999999999999999998888999999999999999999
Q ss_pred ccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeeeeeccCCCce
Q 004119 406 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 485 (773)
Q Consensus 406 D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~Ln~~g~k 485 (773)
|+|+||+...+||++|++||||||||||||||||+|||||||||.||++||++|.||+++|||+.|.+|+|+|||+.|+|
T Consensus 167 D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~~~P~~~~f~rln~~~~k 246 (523)
T PLN03233 167 DPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTV 246 (523)
T ss_pred CCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCCCCCeeeeeEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcCCCceeeEe-
Q 004119 486 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL- 564 (773)
Q Consensus 486 LSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~- 564 (773)
||||++.+||++|.|+||||||++||++||||||+|+||++||+.+|+|.+++.++|+.||+++|+.+++.+||+|||.
T Consensus 247 LSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR~~ld~~a~R~m~V~~ 326 (523)
T PLN03233 247 LSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENKKEIDKRAKRFMAIDK 326 (523)
T ss_pred ccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHHHHhcccCCceEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -cceeEEEEeCCCCcee-eeecccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeeeeeEEEe
Q 004119 565 -NPLKVVITNMESGTIM-HLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCT 642 (773)
Q Consensus 565 -dp~kl~i~N~~~~~~~-~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~rl~~g~~v~l~~~~~i~~~ 642 (773)
||+||+|+|+|.+... .+.+|+||+ +|++|+|.|+|+++||||++||+ +|+||++|+|++.+||+|+
T Consensus 327 ~~pv~v~i~n~~~~~~~~~~~~p~hP~---~~~~G~r~v~~~~~iyIe~~D~~--------~l~~g~~vrL~~~~~i~~~ 395 (523)
T PLN03233 327 ADHTALTVTNADEEADFAFSETDCHPK---DPGFGKRAMRICDEVLLEKADTE--------DIQLGEDIVLLRWGVIEIS 395 (523)
T ss_pred CCcEEEEecCCCCccceeccccccCCC---CCCCceEEEEECCcEEEEHhHHh--------hcCCCCEEEeCceeeEEEE
Confidence 6999999999876433 347899888 79999999999999999999996 4999999988888999999
Q ss_pred EeeecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeecce
Q 004119 643 EVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEA 722 (773)
Q Consensus 643 ~~~~~~~~g~v~e~~~~~~~~~~~K~k~~I~Wv~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~l~~iN~~S~~v~~~~ 722 (773)
+++ +|..|+++ . +. ..+|+|++|||||+. .+.++|++|+|++||++++|++.++|+++|||+|+.+. .|
T Consensus 396 ~~~-~d~~~~~~---~--~~-d~~~~k~~I~Wv~~~---~~~~~~~~~~yd~L~~~~~~~~~~~~~~~~n~~S~~~~-~~ 464 (523)
T PLN03233 396 KID-GDLEGHFI---P--DG-DFKAAKKKISWIADV---SDNIPVVLSEFDNLIIKEKLEEDDKFEDFINPDTLAET-DV 464 (523)
T ss_pred EEE-ecCceEEe---e--CC-CCcccccEEEEcCCC---CCccceEEEecccccCCCCCCcccChhhhcCCCceEEE-eE
Confidence 998 77777554 1 22 236788899999852 35789999999999999999988999999999999998 69
Q ss_pred EeccccccCCCCCeEEEEEeeeEEEecC-CCCCC-eeEeeecCCCCCC
Q 004119 723 YAEPSLHSAAVGDRFQFERLGYFAVDKD-STPEK-LVFNRTVTLKDSF 768 (773)
Q Consensus 723 ~~e~~~~~~~~~~~~QfeR~Gyf~vD~~-~~~~~-~v~n~~v~lk~~~ 768 (773)
|+|+++.++++|++|||||+|||+||+. +++++ +||+.|+.-|...
T Consensus 465 ~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ipdg~~k~ 512 (523)
T PLN03233 465 IGDAGLKTLKEHDIIQLERRGFYRVDRPYMGEEKPLILFMIPDGKKKA 512 (523)
T ss_pred EEchhHhhCCCCCeEEEEEeeEEEEccCCCCCCceEEEEECCCCCccc
Confidence 9999999999999999999999999974 54544 6999999877553
No 8
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.2e-135 Score=1150.58 Aligned_cols=505 Identities=33% Similarity=0.506 Sum_probs=477.4
Q ss_pred hcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-cCCCch
Q 004119 246 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSD 324 (773)
Q Consensus 246 ~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~-~~~qSd 324 (773)
+++|+|+|||||||||||||||||+|++||++||++||+|+||||||||+|+.++|+++|++||+|||++||+ ++|||+
T Consensus 48 a~~~~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe~~~~QSd 127 (601)
T PTZ00402 48 AEEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDVGPTYSSD 127 (601)
T ss_pred CCCCeeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCCceeeccc
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred hHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCc
Q 004119 325 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 404 (773)
Q Consensus 325 ~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~ 404 (773)
||+.||++|++||++|+||+|+|++|+|++.|..+++++||+++++|++++|+.|++|.+.+|.+++|+|+++.+++.+|
T Consensus 128 r~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~~ 207 (601)
T PTZ00402 128 YMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAM 207 (601)
T ss_pred cHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCCCCc
Confidence 99999999999999999999999999999998889999999999999999999999998888899999999999999999
Q ss_pred CccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeeeeeccCCCc
Q 004119 405 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNT 484 (773)
Q Consensus 405 ~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~Ln~~g~ 484 (773)
+|+|+||+...+||++|++|+||||||||||||||+|||||||||.||++||++|.||+++|||+.|.+|||++||++|+
T Consensus 208 rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~~~P~~~h~~rLn~~g~ 287 (601)
T PTZ00402 208 RDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNMEYS 287 (601)
T ss_pred cCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCCCCceEEEEeeEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcCCCceeeEe
Q 004119 485 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 564 (773)
Q Consensus 485 kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~ 564 (773)
+||||++.++|++|+|.||||||++||++||||||+|+||++||..+|+|++++.+++..|++++|+++++.+||+|||+
T Consensus 288 kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr~~l~~~a~R~maV~ 367 (601)
T PTZ00402 288 VMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILDPSVPRYTVVS 367 (601)
T ss_pred cccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhhcCCceEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEeCCCCceeeeecccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeeeeeEEEeEe
Q 004119 565 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 644 (773)
Q Consensus 565 dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~rl~~g~~v~l~~~~~i~~~~~ 644 (773)
||+||+|+|.+.+..+.+++|+||+ +|++|+|.++|+++||||++||. ||+||++|+|+..+|+.|+++
T Consensus 368 ~p~kv~i~~~~~~~~~~~~~p~hP~---~~~~G~r~i~~~~~iyIe~~D~~--------~l~~g~~vrL~~~gn~~i~~~ 436 (601)
T PTZ00402 368 NTLKVRCTVEGQIHLEACEKLLHKK---VPDMGEKTYYKSDVIFLDAEDVA--------LLKEGDEVTLMDWGNAYIKNI 436 (601)
T ss_pred CCCEEEEEECCCCcceEeeccCCCC---CcccCceEEEECCeEEEEhhhHh--------hcCCCCEEEEeccCCEEEEEE
Confidence 9999999999877767788999888 79999999999999999999986 599999998886678888887
Q ss_pred eecCCCCCEEEEEEEEcCC-CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeecceE
Q 004119 645 ILSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAY 723 (773)
Q Consensus 645 ~~~~~~g~v~e~~~~~~~~-~~~K~k~~I~Wv~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~l~~iN~~S~~v~~~~~ 723 (773)
..++++|.|++++|++++. ..+|+|++|||||+. .+.+.+++|+||+||++++|++.++|++.+||+|+.+. .||
T Consensus 437 ~~~~~~g~v~~~~~~~~~~~~~kk~k~~IhWv~~~---~~~~~~~~r~yd~Lf~~~~p~~~~~~~~~ln~~s~~~~-~~~ 512 (601)
T PTZ00402 437 RRSGEDALITDADIVLHLEGDVKKTKFKLTWVPES---PKAEVMELNEYDHLLTKKKPDPEESIDDIIAPVTKYTQ-EVY 512 (601)
T ss_pred EeeCCCCcEEEEEEEECCCCCCCcCCCeEEEecCC---CCcceEEEEecccccCCCCCCccccHHHhcCCCChheE-EEE
Confidence 6456789999999999876 347889999999973 25678999999999999999988899999999999985 799
Q ss_pred eccccccCCCCCeEEEEEeeeEEEecCCCCCCeeEeeecCCCCC
Q 004119 724 AEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDS 767 (773)
Q Consensus 724 ~e~~~~~~~~~~~~QfeR~Gyf~vD~~~~~~~~v~n~~v~lk~~ 767 (773)
+||++.++++|++|||||+|||+||+++.+ .||..|++-|..
T Consensus 513 ~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~--~vl~~ipdg~~~ 554 (601)
T PTZ00402 513 GEEALSVLKKGDIIQLERRGYYIVDDVTPK--KVLIAIPDGREK 554 (601)
T ss_pred EchhHhhCCCCCEEeEEEeEEEEEecCCCC--eEEEECCCCccc
Confidence 999999999999999999999999986533 389989887755
No 9
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=1.3e-131 Score=1158.97 Aligned_cols=502 Identities=31% Similarity=0.529 Sum_probs=476.3
Q ss_pred cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchhH
Q 004119 247 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYF 326 (773)
Q Consensus 247 ~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~~~~qSd~~ 326 (773)
.+|+|+|||||||||||||||||+|++||+|||++||+|+||||||||+|+.++|+++|++||+|||++||+++|||+||
T Consensus 210 ~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~~~~qS~r~ 289 (722)
T PLN02907 210 EEGKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAVTYTSDYF 289 (722)
T ss_pred CCCceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCCcccccccH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCc
Q 004119 327 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 406 (773)
Q Consensus 327 ~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D 406 (773)
+.||++|.+||++|+||+|+|+++++++.|..+|+|+||+++++|++++|++|++|.+.+++++||+|+|+.++|.+|+|
T Consensus 290 ~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D 369 (722)
T PLN02907 290 PQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRD 369 (722)
T ss_pred HHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCccc
Confidence 99999999999999999999999999999988999999999999999999999999999899999999999999999999
Q ss_pred cEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeeeeeccCCCcee
Q 004119 407 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVM 486 (773)
Q Consensus 407 ~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~Ln~~g~kL 486 (773)
+|+||+...+||++||+|++|||||||||||||+|||||||||.||++|+++|.||+++|||+.|.+|+|+|||++|++|
T Consensus 370 ~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~~~p~~~~f~~l~~~~~~l 449 (722)
T PLN02907 370 PVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLL 449 (722)
T ss_pred CEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCCCCCeeEEEEEEcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcCCCceeeEecc
Q 004119 487 SKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNP 566 (773)
Q Consensus 487 SKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~dp 566 (773)
|||++.+||++|+|+||||||++|+++||||||+|+||++||..+|+|+++..++|+.|++++|+++++.+||+|+|+||
T Consensus 450 SKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr~~id~~a~R~~~v~~p 529 (722)
T PLN02907 450 SKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKE 529 (722)
T ss_pred cccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHHHHHHHhccCCCceeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --eeEEEEeCCCCceeeeecccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeeeeeEEEeEe
Q 004119 567 --LKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 644 (773)
Q Consensus 567 --~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~rl~~g~~v~l~~~~~i~~~~~ 644 (773)
++|+|+|+|+. ...+.+|+||+ +|++|+|.++|++.||||++||+. |+||++|+|++.+|+.|+++
T Consensus 530 ~~v~~~i~~~~~~-~~~~~~p~hp~---~~~~g~r~~~~~~~i~i~~~D~~~--------l~~g~~v~L~~~~~~~i~~~ 597 (722)
T PLN02907 530 GRVLLTLTDGPET-PFVRIIPRHKK---YEGAGKKATTFTNRIWLDYADAEA--------ISEGEEVTLMDWGNAIIKEI 597 (722)
T ss_pred CEEEEEEcCCCCC-ceeeeccCCCC---CCccceEEEEECCcEEEEcchHhh--------cCCCCEEEEcccCCEEEEEE
Confidence 77889998864 45678899888 799999999999999999999974 99999998888789999999
Q ss_pred eecCCCCCEEEEEEEEcCC-CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeecceE
Q 004119 645 ILSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAY 723 (773)
Q Consensus 645 ~~~~~~g~v~e~~~~~~~~-~~~K~k~~I~Wv~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~l~~iN~~S~~v~~~~~ 723 (773)
. +|++|+|++++|+|++. ..+|+|++|||||+. ...++|++|+|++||++++|++.++|+++|||+|+.+. .||
T Consensus 598 ~-~~~~g~v~~~~~~~~~~~~~~k~k~~i~Wv~~~---~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~n~~s~~~~-~~~ 672 (722)
T PLN02907 598 T-KDEGGAVTALSGELHLEGSVKTTKLKLTWLPDT---NELVPLSLVEFDYLITKKKLEEDDNFLDVLNPCTKKET-AAL 672 (722)
T ss_pred E-ECCCCcEEEEEEEEccccCCCcCCCeEEEecCC---CCceEEEEEccccccccCCCccccchhHhcCCCceeEE-EEE
Confidence 8 88899999999999876 457889999999972 25799999999999999999988999999999999998 699
Q ss_pred eccccccCCCCCeEEEEEeeeEEEecC-CCCC-CeeEeeecCCC
Q 004119 724 AEPSLHSAAVGDRFQFERLGYFAVDKD-STPE-KLVFNRTVTLK 765 (773)
Q Consensus 724 ~e~~~~~~~~~~~~QfeR~Gyf~vD~~-~~~~-~~v~n~~v~lk 765 (773)
+||++.++++|++|||||+|||+||+. ++++ .+||-.|.+-|
T Consensus 673 ~e~~~~~~~~~~~~QfeR~Gy~~~D~~~~~~~~~~~~~~ip~~~ 716 (722)
T PLN02907 673 GDSNMRNLKRGEIIQLERKGYYRCDAPFVRSSKPIVLFAIPDGR 716 (722)
T ss_pred EcHhHhhCCCCCeEEEEEeEEEEECcCCCCCCceEEEEECCCCC
Confidence 999999999999999999999999974 4444 46887777643
No 10
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-119 Score=1027.18 Aligned_cols=453 Identities=33% Similarity=0.540 Sum_probs=428.1
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCc--ccchHHHHHHHHHHHHHcCCCCCCcCCCchh
Q 004119 248 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP--EAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 325 (773)
Q Consensus 248 ~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp--~r~~~e~~~~I~edL~wLGi~pd~~~~qSd~ 325 (773)
+|+|+|||||||||+|||||||+|++||+|||+|||+|+|||||||| +|+.++|+++|++||+|||++||+++|||+|
T Consensus 99 ~g~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~~~~qSdr 178 (567)
T PRK04156 99 KGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDEVVIQSDR 178 (567)
T ss_pred CCeEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCCccCcccC
Confidence 68899999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcC
Q 004119 326 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 405 (773)
Q Consensus 326 ~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~ 405 (773)
|+.||++|++||++|+||+|+||++++++.|..+++|+||++++++++++|++|.+|.+.+|+++||+|+++.+++++|+
T Consensus 179 ~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~r 258 (567)
T PRK04156 179 LEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVR 258 (567)
T ss_pred HHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCcc
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeeeeeccCCCce
Q 004119 406 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 485 (773)
Q Consensus 406 D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~Ln~~g~k 485 (773)
|||+||+...+||++|++|++|||||||||||||+|||||||||.||++|+++|.||+++|||..|.|+||++|+.+|+|
T Consensus 259 D~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~~~g~k 338 (567)
T PRK04156 259 DWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGFV 338 (567)
T ss_pred ccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcCCCCceEEEcceecCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcCCCceeeEec
Q 004119 486 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLN 565 (773)
Q Consensus 486 LSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~d 565 (773)
||||++.++|++|+|+||||||++||++||++||+|+||++||+.+||+.++..++|+.|++++|+.+++.++|+|+|.|
T Consensus 339 LSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr~~ld~~a~R~~~V~~ 418 (567)
T PRK04156 339 LSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINRKLIDPIANRYFFVRD 418 (567)
T ss_pred eecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhccCCceEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeCCCCceeeeecccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeeeeeEEEeEee
Q 004119 566 PLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVI 645 (773)
Q Consensus 566 p~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~rl~~g~~v~l~~~~~i~~~~~~ 645 (773)
|+||+|+|.+. ..+++|+||+ +|++|+|.++|++.||||++||.+. |+.|+|+++|||+|+++.
T Consensus 419 pv~v~i~~~~~---~~~~~p~hP~---~~~~G~r~v~~~~~i~i~~~D~~~~----------g~~vrL~~~~nv~~~~~~ 482 (567)
T PRK04156 419 PVELEIEGAEP---LEAKIPLHPD---RPERGEREIPVGGKVYVSSDDLEAE----------GKMVRLMDLFNVEITGVS 482 (567)
T ss_pred ceEEEEcCCCc---eEEEcCCCCC---CCCCceEEEEECCeEEEEHHHHhhc----------CCEEEeeeEEEEEEEEEE
Confidence 99999999642 4678999998 7999999999999999999999862 999999999999999864
Q ss_pred ecCCCCCEEEEEEEEcCC---CCCCCC-eeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeecc
Q 004119 646 LSDDKETILHIRAEYDPS---KKTKPK-GVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPE 721 (773)
Q Consensus 646 ~~~~~g~v~e~~~~~~~~---~~~K~k-~~I~Wv~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~l~~iN~~S~~v~~~ 721 (773)
+++|+|+++ ..+|+| ++|||||+ .++++|+||. |+. .+. .
T Consensus 483 ---------~~~~~~~~~~~~~~~k~~~~~i~Wv~~----~~~v~~~v~~---------~~~-------------~~~-~ 526 (567)
T PRK04156 483 ---------VDKARYHSDDLEEARKNKAPIIQWVPE----DESVPVRVLK---------PDG-------------GDI-E 526 (567)
T ss_pred ---------EEEEEEcCCccccccccCCCEEEEccC----CCCeeEEEEC---------CCc-------------eEE-E
Confidence 578888765 346777 59999997 4589999986 211 233 6
Q ss_pred eEeccccccCCCCCeEEEEEeeeEEEecCCC
Q 004119 722 AYAEPSLHSAAVGDRFQFERLGYFAVDKDST 752 (773)
Q Consensus 722 ~~~e~~~~~~~~~~~~QfeR~Gyf~vD~~~~ 752 (773)
|++|+++.++++|++|||||+|||+||+...
T Consensus 527 g~~E~~~~~~~~~~~~QfeR~Gf~~~D~~~~ 557 (567)
T PRK04156 527 GLAEPDVADLEVDDIVQFERFGFVRIDSVED 557 (567)
T ss_pred EEEchhHhhCCCCCEEEEEEeEEEEEecCCC
Confidence 9999999999999999999999999998643
No 11
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=8.3e-119 Score=1018.97 Aligned_cols=465 Identities=30% Similarity=0.511 Sum_probs=428.0
Q ss_pred cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchhH
Q 004119 247 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYF 326 (773)
Q Consensus 247 ~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~~~~qSd~~ 326 (773)
..|+|+|||||||||||||||||+|++||+|||+|||+|+||||||||+|+.++|+++|+++|+|||+.||++++||+||
T Consensus 90 ~~~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~~~~qSd~~ 169 (560)
T TIGR00463 90 KMGEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDEVVYQSDRI 169 (560)
T ss_pred cCCeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCccccccccH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCc
Q 004119 327 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 406 (773)
Q Consensus 327 ~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D 406 (773)
+.||++|++||++|+||+|+||+++|++.|..+++|+||+++++|++++|++|++|.+.+|+++||+|+|+.++|++|+|
T Consensus 170 ~~y~~~a~~Li~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD 249 (560)
T TIGR00463 170 EEYYDYCRKLIEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRD 249 (560)
T ss_pred HHHHHHHHHHHHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeeeeeccCCC-ce
Q 004119 407 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSN-TV 485 (773)
Q Consensus 407 ~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~Ln~~g-~k 485 (773)
+|+||+...+||++||+|++|||||||||||||+|||||||||.||++||++|.+++.+|||..|.++||+++..++ .+
T Consensus 250 ~V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~~lg~~~P~~~h~~~l~~~~~~k 329 (560)
T TIGR00463 250 WVIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGWELPEFIHWGRLKINDVRT 329 (560)
T ss_pred cEEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHHHcCCCCCeEEEEcceecCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876654 48
Q ss_pred ecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcCCCceeeEec
Q 004119 486 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLN 565 (773)
Q Consensus 486 LSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~d 565 (773)
||||.....+.+|.|+||||||++||++|||||++|+||++||..+|||.++++++|+.|++++|+++++.+||+|+|.|
T Consensus 330 Lskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nr~~id~~a~R~~~V~~ 409 (560)
T TIGR00463 330 LSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIYAFNKKIIDPIARRYFFIWN 409 (560)
T ss_pred ecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHHHHHHHHhCcCCCceEEEcC
Confidence 88776666555699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeCCCCceeeeecccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeeeeeEEEeEee
Q 004119 566 PLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVI 645 (773)
Q Consensus 566 p~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~rl~~g~~v~l~~~~~i~~~~~~ 645 (773)
|++|+|+|+|+. ...++|+||+ +|++|+|.++|++.||||++||++ +||++|+|++.|||+|+++.
T Consensus 410 p~~v~i~~~~~~--~~~~~p~hp~---~~~~G~r~v~~~~~i~i~~~D~~~---------~~g~~vrL~~~~ni~~~~~~ 475 (560)
T TIGR00463 410 PVKIEIEGAPEP--KIVERPLHPD---NPEVGERKLIYYGEIYVDKDDLEV---------IEGEEVRLMDWGNVIITKKN 475 (560)
T ss_pred CcEEEEecCCCC--eeEEccCCCC---CCCCceEEEEECCeEEEEHHHHhh---------CCCCEEEEeecccEEEEEEe
Confidence 999999998753 3458889888 799999999999999999999974 69999988888999999986
Q ss_pred ecCCCCCEEEEEEEEcCC-CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeecceEe
Q 004119 646 LSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYA 724 (773)
Q Consensus 646 ~~~~~g~v~e~~~~~~~~-~~~K~k~~I~Wv~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~l~~iN~~S~~v~~~~~~ 724 (773)
++ |.+ .+.++.+ ..+|++++|||||+ .+.++|+++.|++|++ .|++
T Consensus 476 -~~--~~~---~~~~~~~~~~~~~~~~i~Wv~~----~~~v~~~~~~~d~l~~-----------------------~~~~ 522 (560)
T TIGR00463 476 -DD--GSM---YHSLNLEGARKKGKHIIHWLPD----KDAVKVKVIMPDHLIT-----------------------EGRL 522 (560)
T ss_pred -CC--CcE---EeccccccccccCCCEEEECcC----CCceEEEEEcCccccc-----------------------cCcc
Confidence 43 432 2334433 33678899999997 4689999999999843 3788
Q ss_pred ccccccCCCCCeEEEEEeeeEEEecCCCC-CCeeE
Q 004119 725 EPSLHSAAVGDRFQFERLGYFAVDKDSTP-EKLVF 758 (773)
Q Consensus 725 e~~~~~~~~~~~~QfeR~Gyf~vD~~~~~-~~~v~ 758 (773)
|+++...++|++|||||+|||+||+...+ ...||
T Consensus 523 E~~~~~~~~~~~vQfeR~Gy~~~D~~~~~~~~~~f 557 (560)
T TIGR00463 523 EEDASFEEVGDIIQFERFGFYRLDSADKDGKVYVY 557 (560)
T ss_pred CcchhhcCCCCEEEEEEeEEEEEccCCCCCceEEE
Confidence 99888889999999999999999987544 45677
No 12
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-118 Score=972.03 Aligned_cols=503 Identities=34% Similarity=0.595 Sum_probs=471.3
Q ss_pred hcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchh
Q 004119 246 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 325 (773)
Q Consensus 246 ~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~~~~qSd~ 325 (773)
+..|+|+|||||+|+||||||||+|||+|+.||..|+|++|+|||||||+++..+|++.|++||..|||+||.++|+|||
T Consensus 196 ae~GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~~TyTSDy 275 (712)
T KOG1147|consen 196 AEMGKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDRVTYTSDY 275 (712)
T ss_pred cccCceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcceeeechhh
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcC
Q 004119 326 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 405 (773)
Q Consensus 326 ~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~ 405 (773)
|+.+++++++||+.|+||++....|.|+..|+.+.+|.||++|+||||++|++|..|....-.+|+|+|+||+++|.+|+
T Consensus 276 F~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~kGs~~Gl~~CvRaKIdm~s~NkaMR 355 (712)
T KOG1147|consen 276 FDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIWEEMKKGSEKGLKCCVRAKIDMSSPNKAMR 355 (712)
T ss_pred HHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHHHHHhccchhhhhhheeeeecccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999985444799999999999999999
Q ss_pred ccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeeeeeccCCCce
Q 004119 406 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 485 (773)
Q Consensus 406 D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~Ln~~g~k 485 (773)
|||+||+...||||+|++|++||||||||+|.|+++||||.||+.|++.+.++|+|++++||+.+|.+|+|+|||+.+++
T Consensus 356 DPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i~al~LRkp~iwefsRlN~~nTv 435 (712)
T KOG1147|consen 356 DPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYWFIDALGLRKPHIWEFSRLNFVNTV 435 (712)
T ss_pred CCeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccchHHHHHHHHhcCCccceeehhhhhhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcCCCceeeEec
Q 004119 486 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLN 565 (773)
Q Consensus 486 LSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~d 565 (773)
||||++.++|++|+|+||||||++|+++.+|||.+.|++++|++.+|.|++..+++|+++|+++++.+++.+||+.||..
T Consensus 436 LSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG~Sk~v~~meWdkiWAfNKKvIDPVapRytav~~ 515 (712)
T KOG1147|consen 436 LSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQGPSKNVVTMEWDKIWAFNKKVIDPVAPRYTAVVK 515 (712)
T ss_pred hhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhCCccceeeeehHhhhhhcccccCCCCccceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ceeE--EEEeCCCCceeeeecccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEE-EEeeeeeEEEe
Q 004119 566 PLKV--VITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSV-LLRYAFPIKCT 642 (773)
Q Consensus 566 p~kl--~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~rl~~g~~v-~l~~~~~i~~~ 642 (773)
+..| ++.|.|.++..+ ..|.| ++||+.|.+.|.|++.||||+.|++. |..|+.| +|.| ||+.|+
T Consensus 516 ~~~V~v~i~~~~~~~~~~-~~PkH---kKn~~lG~K~v~~~~~I~le~~Da~~--------l~~gEevTlmnW-GN~~i~ 582 (712)
T KOG1147|consen 516 EDRVEVTITNGPQEEYIE-VSPKH---KKNPELGEKKVIYSKKILLEQADAEA--------LKEGEEVTLMNW-GNAIIK 582 (712)
T ss_pred CceEEEecCCCCCcchhh-ccccC---CCCcccCccceeeccceeEeccchhh--------hcCCcEEEEEec-cceeeE
Confidence 6544 455655543322 34454 45999999999999999999999987 8999999 9999 799999
Q ss_pred EeeecCCCCCEEEEEEEEcCCCC-CCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeecc
Q 004119 643 EVILSDDKETILHIRAEYDPSKK-TKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPE 721 (773)
Q Consensus 643 ~~~~~~~~g~v~e~~~~~~~~~~-~K~k~~I~Wv~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~l~~iN~~S~~v~~~ 721 (773)
++. +|++|+||.+.++++++.. +|+|.+++|++.. .++++|.+..|++|++++..+++++|.+.+||+|.... -
T Consensus 583 ki~-kd~sg~vtsl~a~LnldgDfKkTk~KlTWLadt---~~~vpv~lv~fd~lItK~~le~dEd~k~f~n~~t~~~~-~ 657 (712)
T KOG1147|consen 583 KIN-KDASGKVTSLSAKLNLDGDFKKTKLKLTWLADT---NDSVPVDLVDFDHLITKDKLEKDEDFKDFVNPNTVKET-L 657 (712)
T ss_pred Eee-ccCCceEEEEEEEeccCCccccccceeEEeccC---CCccceEEeechhhcchhhcccchhHHHhcCCCccccc-h
Confidence 998 9999999999999988743 7888999999984 57899999999999999999999999999999999876 6
Q ss_pred eEeccccccCCCCCeEEEEEeeeEEEecC-C-CCCCeeEeeecCCCC
Q 004119 722 AYAEPSLHSAAVGDRFQFERLGYFAVDKD-S-TPEKLVFNRTVTLKD 766 (773)
Q Consensus 722 ~~~e~~~~~~~~~~~~QfeR~Gyf~vD~~-~-~~~~~v~n~~v~lk~ 766 (773)
+++|++++++|+||+|||||.|||+||.. + .+..+||+-|+.-|.
T Consensus 658 ~~gd~~ikn~KkGDIIQ~eRkGfy~~D~p~~~~~~p~Vlf~IPdg~t 704 (712)
T KOG1147|consen 658 MLGDPAIKNLKKGDIIQLERKGFYICDVPLPKDGKPLVLFSIPDGKT 704 (712)
T ss_pred hccChhhhccccCceEEEeccceEEeccccCCCCCcEEEEECCCCCc
Confidence 99999999999999999999999999963 2 356899999998775
No 13
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-91 Score=778.55 Aligned_cols=448 Identities=33% Similarity=0.484 Sum_probs=378.9
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-cCCCchhHHHH
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQEL 329 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~-~~~qSd~~~~~ 329 (773)
|+|||||||||+|||||||||++||+|||+|||+|+||||||||+|+.++|+++|+++|+|||++||+ ++|||+||+.|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~~~~QS~r~~~Y 89 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEGPYYQSERFDIY 89 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCceeehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhhh---c-c-CC-CCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCC
Q 004119 330 YELAVELIRRGHAYVDHQTPEEIKEYRE---K-K-MN-SPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFN 403 (773)
Q Consensus 330 y~~a~~LI~~G~AY~C~cs~eel~~~R~---~-~-~~-~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~ 403 (773)
|++|++||++|+||+|+||++||++.|+ . + -| +.+|+ +++|..|+.|..... ++++|+|+|+|+.++++.
T Consensus 90 ~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~---~~~L~~~~~~~~~~~-~~~~viR~k~~~~~~~~~ 165 (472)
T COG0008 90 YEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRD---ERNLTLFEKMADLGE-GGPAVVRLKIPMAHPGPV 165 (472)
T ss_pred HHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCch---hhccchHHHHhhccc-CCCeEEEEeCCCCCCCCc
Confidence 9999999999999999999988887765 1 1 12 44444 667778888876222 678999999998767778
Q ss_pred cCccEEEEEecCC-CCC-CCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeeeeec-c
Q 004119 404 MYDLIAYRIKFTP-HPH-AGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-N 480 (773)
Q Consensus 404 ~~D~V~~R~~~~~-h~~-~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~L-n 480 (773)
|+|+|.||+.+.+ |+. ++.+|+||||||||||||||+|||||||||+||++||++|.||+++|||..|.|+||+++ +
T Consensus 166 ~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~ 245 (472)
T COG0008 166 FRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLN 245 (472)
T ss_pred cccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeec
Confidence 9999999999998 888 899999999999999999999999999999999999999999999999999999999986 5
Q ss_pred CCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcCCCce
Q 004119 481 VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRT 560 (773)
Q Consensus 481 ~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~ 560 (773)
.+|+|||||++...+....+.||+|||+.|+.+++++|++|+++..|+...|++..+....+..++.++++.++...+|+
T Consensus 246 ~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n~ry 325 (472)
T COG0008 246 EDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLNPRY 325 (472)
T ss_pred CCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhhHHH
Confidence 56779999999776666689999999999999999999999999999999999998888889999999999999999999
Q ss_pred eeEecceeEEEEeCCC-CceeeeecccCCCCCCCCCCceeEecccc--eEEEecCcccccCCccccCcCCCCEEEEeeee
Q 004119 561 MVVLNPLKVVITNMES-GTIMHLDAKRWPDAQADDASAFYKVPFSN--VVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAF 637 (773)
Q Consensus 561 ~av~dp~kl~i~N~~~-~~~~~~~~p~~p~~~~~~~~g~~~v~~~~--~iyIe~~D~~~~~~~~~~rl~~g~~v~l~~~~ 637 (773)
|.+ +|.++.+.|++. .......+|+ ++++|.+.+++.+ .++|++.|+.. +.+++.++++...
T Consensus 326 ~~~-~p~e~~~~~l~~~~~~~~~~~~~------~~e~~~~~~~l~~~~~~~i~~~~~~~--------~~~~~~~~~~~l~ 390 (472)
T COG0008 326 MRV-DPVEVVIENLKPHLEEEGATLPL------NPEMGERVVPLTKETLIEIERLDFFF--------FEDKEEVRLKRLA 390 (472)
T ss_pred HHh-CCHHHHHHhhhhhhhhhcccCCC------CHHHHhhhhhhccchHHHHhHHHHHH--------hcchHHHHHHhhc
Confidence 999 999999999764 2222333443 4789999999999 99999998765 3344667665555
Q ss_pred eEEEeEeeecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCce
Q 004119 638 PIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKV 717 (773)
Q Consensus 638 ~i~~~~~~~~~~~g~v~e~~~~~~~~~~~K~k~~I~Wv~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~l~~iN~~S~~ 717 (773)
++.+.++......+.... ...+..++|||++. . .+|..+.| ++++.+..
T Consensus 391 ~~~~~~~l~~~~~~l~~~---------~~~~~~i~~wv~~~----~----------~~~~vk~~--------~~~~plr~ 439 (472)
T COG0008 391 NVIVAEVLEKDAEGLITS---------DWTKENIIHWVKAV----A----------RLFGVKGP--------KLFPPLRV 439 (472)
T ss_pred chHHHHHHHHHHHhhhhc---------cccHHHHHHHHHHH----H----------HHhCCCCc--------ccchhhHH
Confidence 543333321222222111 12244599999872 1 56666666 58999999
Q ss_pred eecceEeccccccCCCC--CeEEEEEeeeEEEe
Q 004119 718 VIPEAYAEPSLHSAAVG--DRFQFERLGYFAVD 748 (773)
Q Consensus 718 v~~~~~~e~~~~~~~~~--~~~QfeR~Gyf~vD 748 (773)
++.+++++|.+.+.... ..+||+|+|||++|
T Consensus 440 a~tG~~~~p~l~~~~~~~g~~~q~~Rl~~~~~~ 472 (472)
T COG0008 440 ALTGGYVEPELADTIELLGKEVQFERLGYALAD 472 (472)
T ss_pred HhcCCccCCCHHHHHHhhchHHHHHHHHHHhhC
Confidence 99889999998765554 45999999999875
No 14
>PLN02627 glutamyl-tRNA synthetase
Probab=100.00 E-value=5.3e-75 Score=655.22 Aligned_cols=322 Identities=22% Similarity=0.326 Sum_probs=275.8
Q ss_pred HHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-
Q 004119 240 LDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK- 318 (773)
Q Consensus 240 ~~~h~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~- 318 (773)
+..|.+...|.|||||||||||+||||||||||+||+|||++||+|||||||||++|+.++|++.|+++|+||||+||+
T Consensus 35 ~~~~~~~~~~~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDeg 114 (535)
T PLN02627 35 AAAAGESKGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEG 114 (535)
T ss_pred ecccccCCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcC
Confidence 4445656778999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred --------cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHHhHHHHHhhcC
Q 004119 319 --------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNG 382 (773)
Q Consensus 319 --------~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~f~~m~~G 382 (773)
+|+||+|++.|+++|++|+++|+||+||||++++++.|+ +.|+++||+++.+++.+.+. .|
T Consensus 115 p~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~---~g 191 (535)
T PLN02627 115 PDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELA---KG 191 (535)
T ss_pred cccCCCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHh---CC
Confidence 489999999999999999999999999999999988774 46899999999998754332 22
Q ss_pred cccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc----ccccccccccccccccCCcceeecCcccccchHH
Q 004119 383 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRAS 458 (773)
Q Consensus 383 ~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~----~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~ 458 (773)
. ++++|||++. .+...+.|.|.+.+.+.... .+|.. +|+||||||||||||+|||||||||+||++||++
T Consensus 192 ~----~~~iR~k~p~-~~~~~~~D~i~G~i~~~~~~-~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpk 265 (535)
T PLN02627 192 T----PYTYRFRVPK-EGSVKIDDLIRGEVSWNTDT-LGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLR 265 (535)
T ss_pred C----CceEEEEcCC-CCceEEEeeeeeeeeecccc-CCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHH
Confidence 1 5789999763 23344556666665544321 12211 5699999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCC
Q 004119 459 YFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD 537 (773)
Q Consensus 459 q~~L~~aLg~~~P~~w~f~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~ 537 (773)
|.+|+++|||..|.|+|+++ ++.+|+|||||++. .++..||++||+|+||+||+++|||+..+
T Consensus 266 Qi~ly~aLg~~~P~f~Hlpli~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~nyla~LGws~~~ 329 (535)
T PLN02627 266 QALIYKALGFPMPRFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPDAMVNYLALLGWNDGT 329 (535)
T ss_pred HHHHHHHcCCCCCeEEEccceeCCCCCccccccCC----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCCC
Confidence 99999999999999888887 58899999999986 68999999999999999999999999765
Q ss_pred ccccHhHHHHHHHHhhhcCCCceeeEecceeEEEEe------CCCCceeeeecccC
Q 004119 538 SLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 587 (773)
Q Consensus 538 ~~~~~~~Le~~~r~~~~~~~~R~~av~dp~kl~i~N------~~~~~~~~~~~p~~ 587 (773)
. -++.+++++++.|....+++++++||+.||.|.| +|.+++.....|++
T Consensus 330 ~-~e~~~~~eli~~F~l~~v~~s~~~fD~~KL~wlN~~yir~l~~~el~~~~~p~l 384 (535)
T PLN02627 330 E-NEIFTLEELVEKFSIDRINKSGAVFDSTKLKWMNGQHLRLLPEEELVKLVGERW 384 (535)
T ss_pred C-CCcCCHHHHHHhCCHhhCCCcccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3 3667899999999999999999999999999888 55555444445544
No 15
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.3e-74 Score=638.93 Aligned_cols=289 Identities=21% Similarity=0.278 Sum_probs=263.3
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchhHHHHHH
Q 004119 252 LTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYE 331 (773)
Q Consensus 252 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~~~~qSd~~~~~y~ 331 (773)
+|||||||||+|||||||+|++||+|||++||+|+|||||||++|+.++|++.|+++|+||||+||++++||+|++.|++
T Consensus 1 ~~RFAPSPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe~y~QSeR~~~Y~~ 80 (433)
T PRK12410 1 MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDKLVYQSENLKFHRQ 80 (433)
T ss_pred CCccCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCCCeehhccHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCC
Q 004119 332 LAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFN 403 (773)
Q Consensus 332 ~a~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~ 403 (773)
+|++||++|+||+|+||++++++.|+ ++|+++||+++.++.+ . ..+++++|||++. +...
T Consensus 81 ~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~------~----~g~~~~iR~k~p~--~~~~ 148 (433)
T PRK12410 81 MAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVL------N----CNKPFVVRLKKPN--HTMS 148 (433)
T ss_pred HHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHH------h----cCCCeEEEEEcCC--Ccee
Confidence 99999999999999999999998774 4789999999988752 1 2347899999873 5677
Q ss_pred cCccEEEEEecCCCCCCCCcc-----ccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCC-ceeeee
Q 004119 404 MYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP-YVWEYS 477 (773)
Q Consensus 404 ~~D~V~~R~~~~~h~~~gd~~-----~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P-~~w~f~ 477 (773)
+.|.|.+++.+.++. .++| +|+||||||||||||+|||||||||+||++||++|.+|+++|||..| .+.|++
T Consensus 149 f~D~v~G~i~~~~~~--~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlp 226 (433)
T PRK12410 149 FTDAIKGEVSFEPDE--IDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLP 226 (433)
T ss_pred eeeccceeEEecccc--CCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEee
Confidence 889999998877542 3455 57999999999999999999999999999999999999999999864 677777
Q ss_pred -eccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcC
Q 004119 478 -RLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKT 556 (773)
Q Consensus 478 -~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~ 556 (773)
.+|.+|+|||||++. .+|.+||++||+|+||+|||+.+||+... ++.++++++..|....
T Consensus 227 li~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~n~l~~lG~~~~~---e~~~~~eli~~F~~~~ 287 (433)
T PRK12410 227 IILNEEGKKMSKRDNA----------------SSVKWLLEQGFLPSAIANYLILLGNKTPK---EIFTLEEAIEWFDIEK 287 (433)
T ss_pred eeeCCCCCeeecccCh----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCcc---cccCHHHHHHhCCHhh
Confidence 469999999999986 68999999999999999999999998763 5667899999999999
Q ss_pred CCceeeEecceeEEEEe
Q 004119 557 APRTMVVLNPLKVVITN 573 (773)
Q Consensus 557 ~~R~~av~dp~kl~i~N 573 (773)
+++++++||+.||.|.|
T Consensus 288 i~~~~~~~d~~kL~~~N 304 (433)
T PRK12410 288 ISKSPAKFDLKKLRFIN 304 (433)
T ss_pred CCCccccCCHHHHHHHH
Confidence 99999999999999988
No 16
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=100.00 E-value=1.7e-74 Score=623.56 Aligned_cols=306 Identities=30% Similarity=0.413 Sum_probs=267.4
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCC-CcCCCchhHHH
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQE 328 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd-~~~~qSd~~~~ 328 (773)
+|||||||||||+|||||||+|++||++||++||+|+|||||||++|+.++|+++|+++|+||||+|| .+++||+|++.
T Consensus 1 kv~tRFAPsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~ 80 (314)
T PF00749_consen 1 KVRTRFAPSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEI 80 (314)
T ss_dssp --EEEE---SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---STCEEEGGGGHHH
T ss_pred CeeEeeCCCCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCCeEEeHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999998 79999999999
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhhc--cCCCCCCCCCHHHHhHHH-HHhhcCcccCCceEEEEEecCCCCCCCcC
Q 004119 329 LYELAVELIRRGHAYVDHQTPEEIKEYREK--KMNSPWRDRPIAESLKLF-EDMRNGRIEEGKATLRMKQDMQNDNFNMY 405 (773)
Q Consensus 329 ~y~~a~~LI~~G~AY~C~cs~eel~~~R~~--~~~~~~R~~s~ee~l~~f-~~m~~G~~~~g~~~lR~K~d~~~~~~~~~ 405 (773)
|+++|++|+++|+||+|+||+++|++.|+. +.+++++....+.++.++ ++|.+|....+++++|+|+++... ..+.
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~-~~~~ 159 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESP-IAFR 159 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCC-EEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccc-cccc
Confidence 999999999999999999999999999875 667788999999999999 789888888889999999998655 7899
Q ss_pred ccEEEEEecCC---CCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeeee-eccC
Q 004119 406 DLIAYRIKFTP---HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYS-RLNV 481 (773)
Q Consensus 406 D~V~~R~~~~~---h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~-~Ln~ 481 (773)
|+|.+++.+.+ |+..+.+++|+||||||||||||+|||||||||+||+++|+.|.||+++||+..|.+.|.+ .+|.
T Consensus 160 D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~ 239 (314)
T PF00749_consen 160 DLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNE 239 (314)
T ss_dssp ETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEET
T ss_pred cCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecC
Confidence 99999998876 5656667899999999999999999999999999999999999999999999988777765 5899
Q ss_pred CCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcCCCcee
Q 004119 482 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTM 561 (773)
Q Consensus 482 ~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~ 561 (773)
+|+|||||++..+ ..+..+++.|++|+++.+||+.+||++... .++..++++++.|....+++.+
T Consensus 240 ~g~kLSKR~~~~~--------------i~~~~~r~~g~~~~~~l~~L~~lG~~~~~~-~e~~~~~~~~~~f~~~~~~~~~ 304 (314)
T PF00749_consen 240 DGKKLSKRKGAKS--------------IELGDYREWGDPPEATLNYLARLGWSPEAI-REFFSLDELIKQFDLSKISKSP 304 (314)
T ss_dssp TSSBSSTTCSHHB--------------HHHHHHHHTT-THHHHHHHHHHTTB-HCTH-HCHHHHHHHHHHC-GGGBHSSH
T ss_pred CCcEechhhcccc--------------ccccccccCCCCHHHHHHHHHHhcCCcchh-hhhcCHHHHHHHhhHhhccCch
Confidence 9999999999742 248899999999999999999999997654 6788899999999888999999
Q ss_pred eEecceeEEE
Q 004119 562 VVLNPLKVVI 571 (773)
Q Consensus 562 av~dp~kl~i 571 (773)
++||+.||.|
T Consensus 305 ~~fd~~kL~w 314 (314)
T PF00749_consen 305 AVFDRKKLDW 314 (314)
T ss_dssp EEHHHHHHHH
T ss_pred HHhCHHHhCC
Confidence 9999988754
No 17
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=2e-72 Score=580.49 Aligned_cols=238 Identities=65% Similarity=1.158 Sum_probs=229.9
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchhHHHH
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQEL 329 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~~~~qSd~~~~~ 329 (773)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++|++.|+++|+|||++||++++||+|++.|
T Consensus 1 ~v~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~~~~QS~r~~~Y 80 (238)
T cd00807 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQL 80 (238)
T ss_pred CceEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCCceecccCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEE
Q 004119 330 YELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 409 (773)
Q Consensus 330 y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~ 409 (773)
++++.+|+++|+||+
T Consensus 81 ~~~~~~L~~~g~aY~----------------------------------------------------------------- 95 (238)
T cd00807 81 YEYAEQLIKKGKAYV----------------------------------------------------------------- 95 (238)
T ss_pred HHHHHHHHHcCCeec-----------------------------------------------------------------
Confidence 999999999999997
Q ss_pred EEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeeeeeccCCCceeccc
Q 004119 410 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKR 489 (773)
Q Consensus 410 ~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~Ln~~g~kLSKR 489 (773)
|++.|++|+++|||||||||||++|||||||||+||+++|++|.||+++||++.|.+|+|+|+|.+|+|||||
T Consensus 96 -------~~~~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~hln~~g~kLSKR 168 (238)
T cd00807 96 -------HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRLNLTYTVMSKR 168 (238)
T ss_pred -------CCCCCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEEECCCCCCccCc
Confidence 1223356667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcCCCc
Q 004119 490 KLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 559 (773)
Q Consensus 490 k~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R 559 (773)
++.++|++|.|.||||||+.|+.+|+++|++|+||++||+.+|||+++..+++++|++++|+.+++.++|
T Consensus 169 ~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~~id~~~~r 238 (238)
T cd00807 169 KLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRKDLNPTAPR 238 (238)
T ss_pred CchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
No 18
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-72 Score=629.20 Aligned_cols=294 Identities=27% Similarity=0.338 Sum_probs=258.5
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchhHHHH
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQEL 329 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~~~~qSd~~~~~ 329 (773)
+|||||||||||+|||||||||++||+|||++||+|||||||||++|..+++.+.|+++|+|||+.||+.++||++++.|
T Consensus 2 ~vr~RFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De~y~QSer~~~y 81 (445)
T PRK12558 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDRTFRQSDRFDRY 81 (445)
T ss_pred ceeEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHHhHHHHHhhcCcccCC-ceEEEEEecCCCC
Q 004119 330 YELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQND 400 (773)
Q Consensus 330 y~~a~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g-~~~lR~K~d~~~~ 400 (773)
.+++++|+++|+||+|+||++++++.|+ +.|++.||+++.++..+. ...| ++++|+|++ .+
T Consensus 82 ~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~--------~~~g~~~~iR~k~~--~~ 151 (445)
T PRK12558 82 DEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAAL--------EAEGRKPHWRFKLD--DE 151 (445)
T ss_pred HHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhH--------HhcCCCceEEEecC--CC
Confidence 9999999999999999999999988775 368999999998876432 2233 579999973 22
Q ss_pred CCCcCccEEEEEecCCCCCCCCcc-----ccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceee
Q 004119 401 NFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWE 475 (773)
Q Consensus 401 ~~~~~D~V~~R~~~~~h~~~gd~~-----~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~ 475 (773)
...+.|.|.+.+.+.... .+ +| +|+||||||||||||+|||||||||+||++||++|.||++||||..|.|+|
T Consensus 152 ~~~~~D~i~G~~~~~~~~-~~-D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~~~P~f~H 229 (445)
T PRK12558 152 PISWDDLIRGEQSIDAAS-LS-DPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAH 229 (445)
T ss_pred ceEEEEEeeeEeeccccc-CC-CeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCCCCCeEEE
Confidence 333445555544433221 11 12 468999999999999999999999999999999999999999999998887
Q ss_pred eeec-cCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhh
Q 004119 476 YSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 554 (773)
Q Consensus 476 f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~ 554 (773)
++++ +.+|+|||||++. .||.+||++||+|+||+||++.|||+.++. ++.+++++++.|..
T Consensus 230 ~pli~~~~g~KLSKR~g~----------------~sv~~~r~~G~~Peai~n~la~lG~s~~~~--e~~~~~eli~~F~l 291 (445)
T PRK12558 230 LSLLTGADGKGLSKRLGG----------------LSIRSLREDGIEPMAIASLLARLGTSDPVE--PYTSMEELAESFDL 291 (445)
T ss_pred cccccCCCcccccccCCC----------------cCHHHHHHCCCCHHHHHHHHHHHcCCCCCc--ccCCHHHHHHhCCH
Confidence 7764 7799999999985 699999999999999999999999998764 56788999999999
Q ss_pred cCCCceeeEecceeEEEEe
Q 004119 555 KTAPRTMVVLNPLKVVITN 573 (773)
Q Consensus 555 ~~~~R~~av~dp~kl~i~N 573 (773)
..+++++++||+.||.|.|
T Consensus 292 ~~~~~~~~~fd~~KL~w~N 310 (445)
T PRK12558 292 SSFSRAPAKFDPEDLERLN 310 (445)
T ss_pred hhCCCccccCCHHHHHHHH
Confidence 9999999999999999988
No 19
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-72 Score=603.29 Aligned_cols=298 Identities=21% Similarity=0.318 Sum_probs=270.2
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC---------c
Q 004119 249 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------I 319 (773)
Q Consensus 249 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~---------~ 319 (773)
..|||||||||||+||||++|||+|||+|||++||+|||||||||.+|..++..+.|.++|.|+||.||+ +
T Consensus 32 ~~VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GP 111 (524)
T KOG1149|consen 32 ACVRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGP 111 (524)
T ss_pred ceeEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCc
Confidence 4599999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred CCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHHhHHHHHhhcCcccCC-ceE
Q 004119 320 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KAT 390 (773)
Q Consensus 320 ~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g-~~~ 390 (773)
|.||+|.++|.+||+.|++.|+||+||||++++...|. ++|+..||++|.+|.-+ | .+.| ++|
T Consensus 112 Y~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~----~----lakg~pf~ 183 (524)
T KOG1149|consen 112 YEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQ----K----LAKGTPFT 183 (524)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhcccCHHHHHH----H----HhcCCCee
Confidence 78999999999999999999999999999999988876 57999999999987643 2 2344 699
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCc----cccccccccccccccccCCcceeecCcccccchHHHHHHHHHh
Q 004119 391 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK----WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 466 (773)
Q Consensus 391 lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~----~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aL 466 (773)
+|||++- .++.+.|.|.+.+......+-||. .+|+||||||||||||+|||||||||+||++||++|..||+||
T Consensus 184 iRFrl~~--~~~~f~DLvyG~v~~~~d~~~gD~VvmKSDgfPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkAf 261 (524)
T KOG1149|consen 184 IRFRLPK--ESPPFTDLVYGKVNHNVDSNEGDPVVMKSDGFPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAF 261 (524)
T ss_pred EEEecCC--CCCChhhhhhhhhhccccccCCCcEEEecCCCcceeeeeeecchhcchhheeecchhccccHHHHHHHHHh
Confidence 9999874 367889999999876665555664 3799999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHH
Q 004119 467 GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 545 (773)
Q Consensus 467 g~~~P~~w~f~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~L 545 (773)
||.+|.+.|.+. +|.+|+|||||++. .+|..|+++||.|+|+.|||+.+||+..... +..+|
T Consensus 262 gW~pPkFaHlpLl~n~d~sKLSKRqgD----------------~~vs~~~e~G~LPeallN~ial~Gwg~~~~~-~f~sl 324 (524)
T KOG1149|consen 262 GWQPPKFAHLPLLLNPDGSKLSKRQGD----------------ASVSHYREQGYLPEALLNYIALLGWGFRTEN-EFFSL 324 (524)
T ss_pred CCCCCceeeeeeeecCCcchhhhhcCc----------------chHHHHHHcCCChHHHHHHHHHcCCCccccc-ccccH
Confidence 999995444443 58999999999997 6899999999999999999999999998764 78899
Q ss_pred HHHHHHhhhcCCCceeeEecceeEEEEe
Q 004119 546 EYHIREELNKTAPRTMVVLNPLKVVITN 573 (773)
Q Consensus 546 e~~~r~~~~~~~~R~~av~dp~kl~i~N 573 (773)
++++.+|....+++..+++|+.||.+.|
T Consensus 325 ~eLieqF~i~~ltk~~a~ld~ekL~~~N 352 (524)
T KOG1149|consen 325 EELIEQFSIERLTKSNAILDSEKLRFLN 352 (524)
T ss_pred HHHHHHhchhhhcccccccCHHHHHHHH
Confidence 9999999999999999999999999888
No 20
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.2e-70 Score=616.54 Aligned_cols=299 Identities=25% Similarity=0.326 Sum_probs=263.9
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCc--------
Q 004119 248 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKI-------- 319 (773)
Q Consensus 248 ~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~~-------- 319 (773)
.+.|||||||||||+|||||+|||++||+|||++||+|||||||||++|+.++|+++|+++|+||||+||+.
T Consensus 2 ~~~v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gp 81 (476)
T PRK01406 2 MMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGP 81 (476)
T ss_pred CCceeEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCc
Confidence 357999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEE
Q 004119 320 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 391 (773)
Q Consensus 320 ~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~l 391 (773)
|+||+|++.|+++|++|+++|+||+||||+||+++.|+ +.|+++||+++.+|..+ .+.+|. ++++
T Consensus 82 y~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~---~~~~g~----~~~i 154 (476)
T PRK01406 82 YRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAA---RLAAGE----PPVI 154 (476)
T ss_pred eehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHH---HHhCCC----CeeE
Confidence 89999999999999999999999999999999998875 46999999999987653 233332 6899
Q ss_pred EEEecCCCCCCCcCccEEEEEecCCCCCCCCc----cccccccccccccccccCCcceeecCcccccchHHHHHHHHHhC
Q 004119 392 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK----WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG 467 (773)
Q Consensus 392 R~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~----~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg 467 (773)
|||++. .+...+.|.|.+++.+.... .+|. -+|+||||||++||||+|+|||||||+||++++++|.+++++||
T Consensus 155 R~k~p~-~~~~~~~D~i~G~~~~~~~~-~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG 232 (476)
T PRK01406 155 RFKVPD-EGEVVFDDLVRGEIEFPNSE-LDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG 232 (476)
T ss_pred EEEcCC-CCceEEEEeccceEEecccc-CCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC
Confidence 999874 23455666666666544332 1221 15799999999999999999999999999999999999999999
Q ss_pred CCCCceeeeee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHH
Q 004119 468 LYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLE 546 (773)
Q Consensus 468 ~~~P~~w~f~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le 546 (773)
+..|.+.|+++ +|.+|.|||||++. .+|.+||++||.|+||.||++.+||+.... +...++
T Consensus 233 ~~~p~~~H~pli~~~~g~klSKR~g~----------------~~l~~l~~~G~~p~Ai~n~l~~lG~s~~~~--e~~~~~ 294 (476)
T PRK01406 233 WEVPVFAHLPLILGPDGKKLSKRHGA----------------TSVEQYRDMGYLPEALLNYLALLGWSHGDQ--EIFSLE 294 (476)
T ss_pred CCCCeEEEeeeeeCCCCCcccCcCCc----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCCcc--ccCCHH
Confidence 99998777776 48999999999985 699999999999999999999999996643 567889
Q ss_pred HHHHHhhhcCCCceeeEecceeEEEEe
Q 004119 547 YHIREELNKTAPRTMVVLNPLKVVITN 573 (773)
Q Consensus 547 ~~~r~~~~~~~~R~~av~dp~kl~i~N 573 (773)
++++.|.....++.+++||+.||.|.|
T Consensus 295 ~~i~~f~l~~~~~s~~~fd~~kL~~~N 321 (476)
T PRK01406 295 ELIELFDLERVSKSPARFDIKKLDWLN 321 (476)
T ss_pred HHHHhcChhhCCCCCccccHHHHHHHH
Confidence 999999999999999999999999988
No 21
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.2e-70 Score=615.63 Aligned_cols=309 Identities=22% Similarity=0.308 Sum_probs=265.4
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-cCCCchhH
Q 004119 248 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYF 326 (773)
Q Consensus 248 ~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~-~~~qSd~~ 326 (773)
+.+|+|||||||||+|||||||+|++||+|||++||+|+|||||||++|+.++|+++|+++|+||||+||+ +|+||+|+
T Consensus 2 ~~~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~ 81 (513)
T PRK14895 2 NNNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRN 81 (513)
T ss_pred CCCeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCCceeEeCcH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999994 89999999
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCC
Q 004119 327 QELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 398 (773)
Q Consensus 327 ~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~ 398 (773)
+.|+++|++|+++|+||+||||++++++.|. +.|++.||+++.++. ...+++++|||++..
T Consensus 82 ~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-----------~~~~~~~iR~k~p~~ 150 (513)
T PRK14895 82 NLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY-----------PTDIKPVIRLKTPRE 150 (513)
T ss_pred HHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh-----------hcCCCeeEEEEcCCC
Confidence 9999999999999999999999999998874 469999999887531 123478999999753
Q ss_pred CCCCCcCccEEEEEecCCCCCCCCc----cccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCcee
Q 004119 399 NDNFNMYDLIAYRIKFTPHPHAGDK----WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVW 474 (773)
Q Consensus 399 ~~~~~~~D~V~~R~~~~~h~~~gd~----~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w 474 (773)
+...+.|.|.+.+.+.... .+|. -+|.||||||++||||+|||||||||.||++|+++|.+|+++||+..|.+.
T Consensus 151 -~~~~~~D~v~G~~~~~~~~-~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG~~~p~~~ 228 (513)
T PRK14895 151 -GSITIHDTLQGEVVIENSH-IDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSMT 228 (513)
T ss_pred -CceEEEeecccceeccccc-CCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcCCCCCeEE
Confidence 2233444444444333221 1111 146899999999999999999999999999999999999999999999888
Q ss_pred eeeec-cCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhh
Q 004119 475 EYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 553 (773)
Q Consensus 475 ~f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~ 553 (773)
|++.+ |.+|.|||||+++ .+|.+||++||.|+||+||++.||||..+ -++.+++++++.|.
T Consensus 229 H~plv~~~~g~KLSKR~g~----------------~~i~~~r~~G~~Peai~n~la~LG~s~~~--~e~~~~~el~~~F~ 290 (513)
T PRK14895 229 HIPLIHGADGAKLSKRHGA----------------LGIEAYKDMGYLPESLCNYLLRLGWSHGD--DEIISMTQAIDWFN 290 (513)
T ss_pred EEEeEEcCCCCccccccCc----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCCC--cCCCCHHHHHhhCC
Confidence 88875 6999999999997 58999999999999999999999999764 36778999999999
Q ss_pred hcCCCceeeEecceeEEEEe------CCCCceeeeecccC
Q 004119 554 NKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 587 (773)
Q Consensus 554 ~~~~~R~~av~dp~kl~i~N------~~~~~~~~~~~p~~ 587 (773)
...+++++++||+.||.|.| +|.+++....+|++
T Consensus 291 ~~~v~~s~~~FD~~KL~wlN~~yi~~l~~~el~~~~~~~l 330 (513)
T PRK14895 291 LDSLGKSPSKLDFAKMNSLNAHYLRMLDNDSLTSKTVEIL 330 (513)
T ss_pred HHhCcCCcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999988 55555444445554
No 22
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=1.3e-69 Score=561.11 Aligned_cols=238 Identities=33% Similarity=0.563 Sum_probs=229.3
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCccc--chHHHHHHHHHHHHHcCCCCCCcCCCchhHH
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA--EKKEYIDHIEEIVQWMGWEPFKITYTSDYFQ 327 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r--~~~e~~~~I~edL~wLGi~pd~~~~qSd~~~ 327 (773)
+|+|||||||||+|||||+|+|++||++||+++|+|+|||||||++| +.+++++.|+++|+|||+.||++++||+|++
T Consensus 1 ~v~~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~ 80 (240)
T cd09287 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDEVVIASDRIE 80 (240)
T ss_pred CceEeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCCccchhccHH
Confidence 48999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCcc
Q 004119 328 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 407 (773)
Q Consensus 328 ~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~ 407 (773)
.|++++++|+++|+||+
T Consensus 81 ~y~~~~~~Li~~G~aY~--------------------------------------------------------------- 97 (240)
T cd09287 81 LYYEYARKLIEMGGAYV--------------------------------------------------------------- 97 (240)
T ss_pred HHHHHHHHHHHcCCccc---------------------------------------------------------------
Confidence 99999999999999997
Q ss_pred EEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeeeeeccCCCceec
Q 004119 408 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMS 487 (773)
Q Consensus 408 V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~Ln~~g~kLS 487 (773)
|++.|++|.++|||||||||||++|||||||||+||+++|+.|.||+++||+..|.++|+++++.+|+|||
T Consensus 98 ---------~~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~~~~kLS 168 (240)
T cd09287 98 ---------HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKIEGGKLS 168 (240)
T ss_pred ---------CcccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecCCCCeec
Confidence 12234556678999999999999999999999999999999999999999999999999999998999999
Q ss_pred ccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcCCCc
Q 004119 488 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 559 (773)
Q Consensus 488 KRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R 559 (773)
||++.++|++|.|.||||||++|+++||++||+|+||++|+..+|||.++..++++.|++++|+++++.++|
T Consensus 169 KR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r~~l~~~~~r 240 (240)
T cd09287 169 TSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRKLIDPRANR 240 (240)
T ss_pred cccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
No 23
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=100.00 E-value=6.1e-69 Score=573.00 Aligned_cols=272 Identities=19% Similarity=0.212 Sum_probs=239.0
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-cCCCchhH
Q 004119 248 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYF 326 (773)
Q Consensus 248 ~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~-~~~qSd~~ 326 (773)
..+|+|||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++|++.|+++|+||||+||+ +++||+|+
T Consensus 3 ~~~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~ 82 (299)
T PRK05710 3 MTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGPVLYQSQRH 82 (299)
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCCceEeeccH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999996 89999999
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhh------ccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEec----
Q 004119 327 QELYELAVELIRRGHAYVDHQTPEEIKEYRE------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD---- 396 (773)
Q Consensus 327 ~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~------~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d---- 396 (773)
+.|++++++|+++|+||+|+||++||++.|. +.|+++||+++.+++. +++||+|++
T Consensus 83 ~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~--------------~~~iRlk~~~~~~ 148 (299)
T PRK05710 83 DAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRN--------------PPAWRLRVPDAVI 148 (299)
T ss_pred HHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccC--------------CceEEEEcCCCce
Confidence 9999999999999999999999999988761 4789999999876531 579999987
Q ss_pred ----------CCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHh
Q 004119 397 ----------MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 466 (773)
Q Consensus 397 ----------~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aL 466 (773)
..+.+..+.|||++|. +|+||||||||||||+|||||||||+||+++|++|.||+++|
T Consensus 149 ~~~D~~~G~~~~~~~~~~~D~Vi~R~------------dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aL 216 (299)
T PRK05710 149 AFDDRLQGRQHQDLALAVGDFVLRRA------------DGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLL 216 (299)
T ss_pred EEEEecceeEeeCCCCCCCCEEEEec------------CCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHc
Confidence 1123335667777775 359999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeeec-cCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHH
Q 004119 467 GLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 545 (773)
Q Consensus 467 g~~~P~~w~f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~L 545 (773)
||..|.|.|++.+ +.+|+|||||+++ .+|.. .|+.|+ |.+|++.|||+.... .+...+
T Consensus 217 g~~~P~y~H~pll~~~~g~kLSKr~~~----------------~~i~~---~g~~p~-l~~~l~~lG~~~~~~-~~~~~~ 275 (299)
T PRK05710 217 GLPTPRYLHLPLVLNADGQKLSKQNGA----------------PALDA---AGPLPV-LAAALRFLGQPPPAA-DASVEE 275 (299)
T ss_pred CCCCCeEEEeecccCCCCCcccccCCc----------------cchhh---cCcCHH-HHHHHHHcCCCCCcc-cccccc
Confidence 9999999999874 9999999999987 35555 799999 999999999987643 233333
Q ss_pred --HHHHHHhhhcCCCceeeEecc
Q 004119 546 --EYHIREELNKTAPRTMVVLNP 566 (773)
Q Consensus 546 --e~~~r~~~~~~~~R~~av~dp 566 (773)
++++..|....+++.++++.+
T Consensus 276 ~~~~~i~~f~~~~~~~~~~~~~~ 298 (299)
T PRK05710 276 LLAQAVAHWDLTRLPRQAEINPA 298 (299)
T ss_pred CHHHHHHhCCHhhCCcCCccCCC
Confidence 788899988888888887754
No 24
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=100.00 E-value=8.6e-69 Score=606.15 Aligned_cols=298 Identities=23% Similarity=0.295 Sum_probs=266.8
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCC-CcCCCchhHHH
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQE 328 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd-~~~~qSd~~~~ 328 (773)
+|+|||||||||+|||||||+||+||+|||++||+|+|||||||++|+.++|+++|+++|+||||+|| ++++||+|++.
T Consensus 1 ~v~~RfAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~~~~QS~r~~~ 80 (470)
T TIGR00464 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEGPYYQSQRLDI 80 (470)
T ss_pred CceEeeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCCeeehhCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 68999999999
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCC
Q 004119 329 LYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 400 (773)
Q Consensus 329 ~y~~a~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~ 400 (773)
|+++|++||++|+||+||||++++++.|+ ++|+++||+++.+++...++ ..+++++|||++.. .
T Consensus 81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~-------~g~~~~iR~k~~~~-~ 152 (470)
T TIGR00464 81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLA-------KGIPPVVRFKIPQE-A 152 (470)
T ss_pred HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHh-------cCCCceEEEEcCCC-C
Confidence 99999999999999999999999998764 47999999999988654221 22479999999853 3
Q ss_pred CCCcCccEEEEEecCCCCCCCCc----cccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeee
Q 004119 401 NFNMYDLIAYRIKFTPHPHAGDK----WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEY 476 (773)
Q Consensus 401 ~~~~~D~V~~R~~~~~h~~~gd~----~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f 476 (773)
...+.|.|.+++.+.++.. +|. -+|+||||||++||||+|||||||||.||+.++++|.+|+++||+..|.+.|+
T Consensus 153 ~~~~~D~~~G~~~~~~~~~-~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~ 231 (470)
T TIGR00464 153 VVSFNDQVRGEITFQNSEL-DDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAHL 231 (470)
T ss_pred ceeEEecccceEEecCccC-CCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCCCCCeEEEE
Confidence 4677888888887765432 232 15799999999999999999999999999999999999999999999988888
Q ss_pred ee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhc
Q 004119 477 SR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNK 555 (773)
Q Consensus 477 ~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~ 555 (773)
+. ++.+|+|||||++. .+|.+|+++||.|+|+.+|++.+||+.... -+...++++++.|...
T Consensus 232 p~l~~~~g~kLSKR~g~----------------~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~-~e~~~~~~~i~~f~l~ 294 (470)
T TIGR00464 232 PMILDEDGKKLSKRDGA----------------TSIMQFKEQGYLPEALINYLALLGWSPPDD-QEFFSLEELIEIFSLN 294 (470)
T ss_pred eeeecCCCccccccCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCc-cccCCHHHHHHhcCcc
Confidence 76 58899999999984 699999999999999999999999988754 3456778999999999
Q ss_pred CCCceeeEecceeEEEEe
Q 004119 556 TAPRTMVVLNPLKVVITN 573 (773)
Q Consensus 556 ~~~R~~av~dp~kl~i~N 573 (773)
.+++..++||..||.|.|
T Consensus 295 ~~~~~~~~fd~~kL~~~N 312 (470)
T TIGR00464 295 RVSKSPAKFDWKKLQWLN 312 (470)
T ss_pred cCCCCCCeecHHHHHHHH
Confidence 999999999999999888
No 25
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=100.00 E-value=2.9e-67 Score=554.38 Aligned_cols=261 Identities=19% Similarity=0.180 Sum_probs=225.8
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-cCCCchhHHHH
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQEL 329 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~-~~~qSd~~~~~ 329 (773)
++|||||||||+|||||||+||+||++||++||+|+|||||||++|+.++|+++|+++|+||||+||+ +++||+|++.|
T Consensus 1 ~~~RFAPSPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y 80 (272)
T TIGR03838 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGEVVYQSQRHALY 80 (272)
T ss_pred CeeeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999997 57999999999
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhh-h--ccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCc
Q 004119 330 YELAVELIRRGHAYVDHQTPEEIKEYR-E--KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 406 (773)
Q Consensus 330 y~~a~~LI~~G~AY~C~cs~eel~~~R-~--~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D 406 (773)
+++|++|+++|+||+|+||++|+++.| . +.|++.||+ +.. ...++++++|+|++. .+..+.|
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~-~~~------------~~~~~~~~~Rlk~~~--~~~~~~D 145 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRN-GLL------------GRPARPAAWRLRVPD--GVIAFDD 145 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhc-ccc------------cccCCCceEEEecCC--CCceEEE
Confidence 999999999999999999999999885 2 468888998 320 123447899999874 5678899
Q ss_pred cEEEEEecCCCCCCCCcc-----ccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeeeee-cc
Q 004119 407 LIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSR-LN 480 (773)
Q Consensus 407 ~V~~R~~~~~h~~~gd~~-----~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~-Ln 480 (773)
.+.+++.+.. +...++| +|+||||||||||||+|||||||||+||++||++|.||+++|||..|.|.|+++ +|
T Consensus 146 ~~~g~~~~~~-~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~ 224 (272)
T TIGR03838 146 RLQGPQQQDL-AAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVN 224 (272)
T ss_pred eeeeEEEecC-cccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhC
Confidence 9999987542 3344556 459999999999999999999999999999999999999999999998888887 49
Q ss_pred CCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHH
Q 004119 481 VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 548 (773)
Q Consensus 481 ~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 548 (773)
.+|+|||||++...|++ + -+++++.+|++.+||+.... .+..+++++
T Consensus 225 ~~g~kLSKR~~~~~i~~----------------~----~~~~~~~~~l~~lG~~~~~~-~~~~~~~~~ 271 (272)
T TIGR03838 225 ADGEKLSKQNGAPALDL----------------S----HPLPALLAALRFLGLPPPPE-LAAASPAEL 271 (272)
T ss_pred CCCCeeeccCCccchhc----------------C----CcHHHHHHHHHHcCCCCCcc-cccCCHHHh
Confidence 99999999999865543 2 24689999999999987643 355555554
No 26
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=100.00 E-value=4.5e-62 Score=503.05 Aligned_cols=222 Identities=36% Similarity=0.551 Sum_probs=210.3
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-cCCCchhHHH
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQE 328 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~-~~~qSd~~~~ 328 (773)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||+.|+.++|+++|+++|+|||++||+ +++||+|++.
T Consensus 1 ~v~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~~~~QS~r~~~ 80 (230)
T cd00418 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEGPYRQSDRFDL 80 (230)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeehhcCHHH
Confidence 379999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccE
Q 004119 329 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 408 (773)
Q Consensus 329 ~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V 408 (773)
|+++|++|+++|
T Consensus 81 y~~~~~~L~~~g-------------------------------------------------------------------- 92 (230)
T cd00418 81 YRAYAEELIKKG-------------------------------------------------------------------- 92 (230)
T ss_pred HHHHHHHHHHcC--------------------------------------------------------------------
Confidence 999999999999
Q ss_pred EEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeeeeec-cCCCceec
Q 004119 409 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMS 487 (773)
Q Consensus 409 ~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~L-n~~g~kLS 487 (773)
|+|||||||||||++|||||||||+||++||+.|.||+++||++.|.|+|++++ +.+|+|||
T Consensus 93 -----------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g~KLS 155 (230)
T cd00418 93 -----------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGTKLS 155 (230)
T ss_pred -----------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCCCCcc
Confidence 489999999999999999999999999999999999999999999999999987 56779999
Q ss_pred ccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcCCCceeeEecce
Q 004119 488 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPL 567 (773)
Q Consensus 488 KRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~dp~ 567 (773)
||+++ .||+++|++|++|+||++|++.|||+.... -++..++++++.|....+++.+++||+.
T Consensus 156 Kr~~~----------------~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~-~~~~~~~~li~~f~~~~~~~~~~~~d~~ 218 (230)
T cd00418 156 KRKLN----------------TTLRALRRRGYLPEALRNYLALIGWSKPDG-HELFTLEEMIAAFSVERVNSADATFDWA 218 (230)
T ss_pred CcCCC----------------cCHHHHHHCCCcHHHHHHHHHHcCCCCCCC-ccccCHHHHHHhcCHhhCCCCCcccCHH
Confidence 99986 699999999999999999999999998643 3556678899999999999999999999
Q ss_pred eEEEEe
Q 004119 568 KVVITN 573 (773)
Q Consensus 568 kl~i~N 573 (773)
||.+.|
T Consensus 219 kL~~~N 224 (230)
T cd00418 219 KLEWLN 224 (230)
T ss_pred HHHHHH
Confidence 998777
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2.4e-58 Score=478.54 Aligned_cols=223 Identities=26% Similarity=0.387 Sum_probs=211.3
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC---------cC
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------IT 320 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~---------~~ 320 (773)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++|++.|+++|+||||+||+ ++
T Consensus 1 ~v~~RfAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~ 80 (239)
T cd00808 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPY 80 (239)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCE
Confidence 489999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred CCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCC
Q 004119 321 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 400 (773)
Q Consensus 321 ~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~ 400 (773)
+||+|++.|++++++|+++|
T Consensus 81 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------ 100 (239)
T cd00808 81 RQSERLEIYRKYAEKLLEKG------------------------------------------------------------ 100 (239)
T ss_pred eeeCCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 99999999999999999988
Q ss_pred CCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeeeeec-
Q 004119 401 NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL- 479 (773)
Q Consensus 401 ~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~L- 479 (773)
+|+|||+||+||||++|||||||||+||+.++++|.||+++||++.|.++|++++
T Consensus 101 ------------------------dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~ 156 (239)
T cd00808 101 ------------------------DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLIL 156 (239)
T ss_pred ------------------------CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeecccc
Confidence 2589999999999999999999999999999999999999999999999999985
Q ss_pred cCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcCCCc
Q 004119 480 NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 559 (773)
Q Consensus 480 n~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R 559 (773)
|.+|.|||||+++ .||++||++|++|+||++|++.+|++..+. -+...++++++.|....+++
T Consensus 157 ~~~g~KLSKR~~~----------------~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~-~~~~~~~~l~~~f~~~~~~~ 219 (239)
T cd00808 157 NPDGKKLSKRKGD----------------TSISDYREEGYLPEALLNYLALLGWSPPDG-EEFFTLEELIELFDLERVSK 219 (239)
T ss_pred CCCCCcccCCCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCC-CCcCCHHHHHhcCCHhhCCc
Confidence 9999999999997 799999999999999999999999998764 25567788999999999999
Q ss_pred eeeEecceeEEEEe
Q 004119 560 TMVVLNPLKVVITN 573 (773)
Q Consensus 560 ~~av~dp~kl~i~N 573 (773)
.+++||+.||.+.|
T Consensus 220 ~~~~~d~~kL~~~n 233 (239)
T cd00808 220 SPAIFDPEKLDWLN 233 (239)
T ss_pred CcCcCCHHHHHHHH
Confidence 99999999987666
No 28
>PF03950 tRNA-synt_1c_C: tRNA synthetases class I (E and Q), anti-codon binding domain; InterPro: IPR020059 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2HZ7_A 3AII_A 1ZJW_A 1GTS_A 2RD2_A 1QRU_A 1O0B_A 1NYL_A 1EUQ_A 2RE8_A ....
Probab=100.00 E-value=8.4e-43 Score=347.52 Aligned_cols=171 Identities=43% Similarity=0.735 Sum_probs=142.9
Q ss_pred CCceeeEecceeEEEEeCCCCceeeeecccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeee
Q 004119 557 APRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYA 636 (773)
Q Consensus 557 ~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~rl~~g~~v~l~~~ 636 (773)
+||+|||.||++|.|+|+|++....+++|+||+ +|++|+|.++|+++||||++| |+||+||+.|+|+++
T Consensus 1 A~R~maV~dPv~v~I~n~~~~~~~~~~~p~hPk---~~~~G~r~v~~~~~i~Ie~~D--------~~~l~~g~~v~L~~~ 69 (174)
T PF03950_consen 1 APRYMAVLDPVKVKITNFPEDEPEEIEVPLHPK---NPELGTREVPFSKTIYIERSD--------FFRLAPGKEVRLMYW 69 (174)
T ss_dssp SEEE-EECSEEEEEECT--SSSEEEEEEESSTT----GGG-EEEEEECSEEEEEGGG----------SEETTCEEEETTT
T ss_pred CCcEEEECCCEEEEEEcCCCCCEEEEEecCCCC---CccCceEEEEECceEEEEhhH--------hhhccCCCEEEEecc
Confidence 689999999999999999988888999999998 799999999999999999999 567999999999999
Q ss_pred eeEEEeEeeecCCCCCEEEEEEEEcCCCC---CCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCC
Q 004119 637 FPIKCTEVILSDDKETILHIRAEYDPSKK---TKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNP 713 (773)
Q Consensus 637 ~~i~~~~~~~~~~~g~v~e~~~~~~~~~~---~K~k~~I~Wv~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~l~~iN~ 713 (773)
|||+|++++ ++.+|.|++++|+|+++.. +|+|++|||||+ .++++||+|+|++||++++ ++ +|+ +||
T Consensus 70 ~ni~i~~~~-~~~~g~v~~l~~~~~~~~~~~~~k~k~~I~Wv~~----~~~v~~e~r~yd~Lf~~~~-~~--~~~--inp 139 (174)
T PF03950_consen 70 GNIKITSIE-KDEDGKVTELKARYDPEDKEGAKKPKAIIHWVSA----KDSVPVEVRLYDHLFTVDN-DE--DDL--INP 139 (174)
T ss_dssp EEEEEEEEE-E-TTSSEEEEEEEEECTTHHHHHHHT-EE-EEEG----CC-EEEEEEEE--SBSSS--GG--TGG--B-T
T ss_pred ceEEEEEee-ecCCCCEEEEEEEEecccccCCcccCcEEEEccC----CCCeeeEEEEehhhcCCCc-cc--cce--ECC
Confidence 999999998 8889999999999998643 578889999998 6799999999999999988 64 666 999
Q ss_pred CCceeecceEeccccccCCCCCeEEEEEeeeEEEe
Q 004119 714 DSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD 748 (773)
Q Consensus 714 ~S~~v~~~~~~e~~~~~~~~~~~~QfeR~Gyf~vD 748 (773)
+|+.++..|++|+++.++++|++|||||+|||+||
T Consensus 140 ~s~~~~~~~~~E~~~~~~k~g~~vQfER~Gyf~vD 174 (174)
T PF03950_consen 140 NSLKVVKNGLVEPALKNLKPGDIVQFERRGYFRVD 174 (174)
T ss_dssp TSEEEEEEEEE-GGGGGS-TT-EEEETTTEEEEEE
T ss_pred CCcEEccCEEEchhHHhCCCCCEEeEEEeeEEEeC
Confidence 99998768999999999999999999999999998
No 29
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=100.00 E-value=4.9e-40 Score=323.53 Aligned_cols=138 Identities=51% Similarity=0.838 Sum_probs=115.8
Q ss_pred ChhHHHHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh------------------------c
Q 004119 8 DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT------------------------I 63 (773)
Q Consensus 8 ~~~~~~~~f~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~------------------------l 63 (773)
+++++++||++|||+|+||+||+||++++++|.++|++++..++||+++|+|||+ |
T Consensus 2 s~eel~~lF~~iGL~e~kAket~KN~kls~~L~~iI~ea~~~~~~dk~~g~LLy~lAtk~k~~~~~~r~~iv~~I~~gkl 81 (164)
T PF04558_consen 2 SEEELIELFKSIGLSEKKAKETLKNKKLSASLKAIINEAGVDSGCDKKQGNLLYQLATKLKPQALPHRPFIVKYIVDGKL 81 (164)
T ss_dssp -HHHHHHHHHHTT--HHHHHHHTTSHHHHHHHHHHHHTS-TT----HHHHHHHHHHHHHHTT---TTHHHHHHHHHTTS-
T ss_pred ChHHHHHHHHHcCCChhhHHHHHhCHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHhCCC
Confidence 4689999999999999999999999999999999999999888999999999999 9
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccc-cchhhhHHHHHhhCCCC
Q 004119 64 KTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYR-TNVGDLFAHVRKRLPWA 142 (773)
Q Consensus 64 ks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~-~n~g~ll~~vr~~LkWA 142 (773)
+|++||+||++|+++++..++|.++||++|||||+||+|||+++|.+||++|+++|+++||+ ||+|.+++++|..||||
T Consensus 82 kt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGVGV~VT~E~I~~~V~~~i~~~k~~i~~~Ry~~~~~~~~~~k~~~~LkWA 161 (164)
T PF04558_consen 82 KTNLQLDAALKYLKSNPSEPIDVAEFEKACGVGVVVTPEQIEAAVEKYIEENKEEILEKRYRLFNIGLLLVKVRPSLKWA 161 (164)
T ss_dssp -SHHHHHHHHHHHHHHGG-G--HHHHHHTTTTT----HHHHHHHHHHHHHHTHHHHHHHGGGGHHHHHHHHHT-GGGTTS
T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHcCCCeEECHHHHHHHHHHHHHHhHHHHHHHHhccCchhhHHHHHhccCCCC
Confidence 99999999999999998668999999999999999999999999999999999999999999 99999999999999999
Q ss_pred Chh
Q 004119 143 DPK 145 (773)
Q Consensus 143 d~k 145 (773)
|||
T Consensus 162 d~k 164 (164)
T PF04558_consen 162 DGK 164 (164)
T ss_dssp -T-
T ss_pred CCC
Confidence 986
No 30
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.2e-28 Score=271.41 Aligned_cols=253 Identities=18% Similarity=0.199 Sum_probs=198.7
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH---HcC--CEEEEEeecCCccc-------------chHHHHHHHHHHHHHcCCC-C
Q 004119 256 PPEPNGYLHIGHAKAMFVDFGLAK---ERG--GYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWE-P 316 (773)
Q Consensus 256 aPsPtG~LHIGhaRaal~n~~~Ar---~~~--G~~iLRidDTDp~r-------------~~~e~~~~I~edL~wLGi~-p 316 (773)
.|+++.+.||||||++++-+++.| ..| .+|+.+|+|+|.+- -.+.|++++.+|++.||+. |
T Consensus 29 GpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p 108 (464)
T COG0215 29 GPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPP 108 (464)
T ss_pred CCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 799999999999999998888777 233 58999999999541 2567999999999999995 6
Q ss_pred CCcCCCchhHHHHHHHHHHHHHcCCcccC-CCCHH-HHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEE
Q 004119 317 FKITYTSDYFQELYELAVELIRRGHAYVD-HQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 394 (773)
Q Consensus 317 d~~~~qSd~~~~~y~~a~~LI~~G~AY~C-~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K 394 (773)
+..++.|+|++.+.+++++||++|+||+. ..+.. +..++ +.|...-+..+. ++|..|.. ..
T Consensus 109 ~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f--~~YG~LS~~~~l-------e~l~~gar--------~~ 171 (464)
T COG0215 109 DIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKF--KDYGKLSGRDSL-------EELQAGAR--------VE 171 (464)
T ss_pred cccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccc--hhhHhhcCCCCh-------hHHhhccc--------cc
Confidence 88999999999999999999999999986 23332 22222 233322222222 23444442 22
Q ss_pred ecCCCCCCCcCccEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCcccccchHHHHHHH
Q 004119 395 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLL 463 (773)
Q Consensus 395 ~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~gITHviRg~E~~~~~~~q~~L~ 463 (773)
.+ ..+.+..|||||+.+.+++|.|.++| .|+|+||..|+ +|-|-.|+.+++ .|+.|...|.-
T Consensus 172 ~~--~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiF---PHHENEiAQse-- 244 (464)
T COG0215 172 VD--EEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIF---PHHENEIAQSE-- 244 (464)
T ss_pred cc--cccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccC---CCcccHHHHHH--
Confidence 22 23566799999999999999999999 89999999996 677888888887 68888888832
Q ss_pred HHhC-CCCCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCcccc
Q 004119 464 HALG-LYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 541 (773)
Q Consensus 464 ~aLg-~~~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~ 541 (773)
-+.| -+...||.| ++++++|+|||||.|| +.||+++..+ |.|+++|.|+++.+|+.+-+ ++
T Consensus 245 a~~g~~~~a~yWmH~G~l~i~geKMSKSLGN---------------fiti~d~l~~-~~p~~lR~~lls~HYR~pl~-fs 307 (464)
T COG0215 245 AATGVKPFAKYWMHNGFLNIDGEKMSKSLGN---------------FITVRDLLKK-YDPEVLRLFLLSSHYRSPLD-FS 307 (464)
T ss_pred hhhCCCcceeEeEEcceeeecCcCcccccCC---------------eeEHHHHHhh-cCHHHHHHHHHHHHhCCccc-cC
Confidence 2346 344899998 7899999999999999 7899999988 99999999999999988865 77
Q ss_pred HhHHHHHH
Q 004119 542 LDRLEYHI 549 (773)
Q Consensus 542 ~~~Le~~~ 549 (773)
.+.|+++.
T Consensus 308 ee~L~~A~ 315 (464)
T COG0215 308 EELLEEAK 315 (464)
T ss_pred HHHHHHHH
Confidence 77777664
No 31
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.94 E-value=1.6e-27 Score=253.28 Aligned_cols=251 Identities=18% Similarity=0.230 Sum_probs=173.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCccc-------------chHHHHHHHHHHHHHcCCCC-
Q 004119 256 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWEP- 316 (773)
Q Consensus 256 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~r-------------~~~e~~~~I~edL~wLGi~p- 316 (773)
.|+++.+.||||+|++++-+++.| .+...++++|+|+|..- -...|++.+++||+.||+.+
T Consensus 15 GPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p 94 (300)
T PF01406_consen 15 GPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPP 94 (300)
T ss_dssp EEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----
T ss_pred CCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 799999999999999998877777 46678999999999531 25689999999999999986
Q ss_pred CCcCCCchhHHHHHHHHHHHHHcCCcccCC-CCHH-HHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEE
Q 004119 317 FKITYTSDYFQELYELAVELIRRGHAYVDH-QTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 394 (773)
Q Consensus 317 d~~~~qSd~~~~~y~~a~~LI~~G~AY~C~-cs~e-el~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K 394 (773)
+..+++|++++.+.+++++||++|+||.-. .+.. .+.+. +.|.... .+.. ++|..|...+
T Consensus 95 ~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~--~~YG~Ls-~~~~-------~~l~~~~~~~-------- 156 (300)
T PF01406_consen 95 DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKF--PDYGKLS-NQDL-------EDLEAGARVE-------- 156 (300)
T ss_dssp SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGS--TTTTTTT-T-SH-------HHHHHCHHHT--------
T ss_pred ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccc--ccccccc-ccch-------hhHHhhhhcc--------
Confidence 678899999999999999999999999864 2222 11111 3343221 2222 3455444221
Q ss_pred ecCCCCCCCcCccEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCcccccchHHHHHHH
Q 004119 395 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLL 463 (773)
Q Consensus 395 ~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~gITHviRg~E~~~~~~~q~~L~ 463 (773)
....+.+..||+||+.....++.|.++| .|+|+||..|+ +|-|.-|+.+++ .|+.|...|..
T Consensus 157 --~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~F---PHHENEiAqs~-- 229 (300)
T PF01406_consen 157 --VDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIF---PHHENEIAQSE-- 229 (300)
T ss_dssp --T-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTT---THHHHHHHHHH--
T ss_pred --cccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCC---CCccchHHHHH--
Confidence 2234667799999999888889999999 89999999996 777888888887 68888887743
Q ss_pred HHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccH
Q 004119 464 HALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRL 542 (773)
Q Consensus 464 ~aLg~~~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~ 542 (773)
-+.|-..+.+|.| ++|+++|+||||+.++ +.||+++..+ |+|.+||.||++.+++.+-+ ++.
T Consensus 230 a~~g~~~a~~W~H~g~l~~~g~KMSKSlgN---------------~~~i~dll~~-~~~~~lR~~~l~~hYr~~l~-~s~ 292 (300)
T PF01406_consen 230 AATGKPFANYWMHNGHLNVDGEKMSKSLGN---------------FITIRDLLKK-YSPDALRLFLLSTHYRKPLN-FSE 292 (300)
T ss_dssp HHHSS-SEEEEEEE--EEETTCE--TTTT------------------BHHHHHTT-S-HHHHHHHHHTS-TTS-EE-E-H
T ss_pred HhhCchHHHHHHHHHHHhhcCccccccCCC---------------EEEHHHHhhc-CCHHHHHHHHhcCCCCCccc-cCH
Confidence 2336667889998 6899999999999998 6899999976 99999999999999988765 788
Q ss_pred hHHHHH
Q 004119 543 DRLEYH 548 (773)
Q Consensus 543 ~~Le~~ 548 (773)
+.|+++
T Consensus 293 ~~l~~A 298 (300)
T PF01406_consen 293 ENLEEA 298 (300)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888765
No 32
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.93 E-value=5e-25 Score=250.25 Aligned_cols=255 Identities=17% Similarity=0.209 Sum_probs=195.2
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCccc-------------chHHHHHHHHHHHHHcCCCC
Q 004119 255 FPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWEP 316 (773)
Q Consensus 255 FaPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~r-------------~~~e~~~~I~edL~wLGi~p 316 (773)
-.|+|+|++||||+|+++..+.++| .|.+.|+.++||+|+.- -...|.+.+.+++++||+.+
T Consensus 27 cgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~~ 106 (465)
T TIGR00435 27 CGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVLP 106 (465)
T ss_pred ecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3799999999999999999999999 67889999999999642 24689999999999999997
Q ss_pred CC-cCCCchhHHHHHHHHHHHHHcCCcccCC-CCHH-HHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEE
Q 004119 317 FK-ITYTSDYFQELYELAVELIRRGHAYVDH-QTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRM 393 (773)
Q Consensus 317 d~-~~~qSd~~~~~y~~a~~LI~~G~AY~C~-cs~e-el~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~ 393 (773)
+. .+.+|+|.+.+++++++|+++|+||.+. .+.. .+..+ +.|..- ..+.. ++|..|. |.
T Consensus 107 d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~--~~yG~l-s~~~~-------~~~~~~~--------~~ 168 (465)
T TIGR00435 107 PDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF--KDYGKL-SKQDL-------DQLEAGA--------RV 168 (465)
T ss_pred CcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEecccc--chhccC-CCCCH-------HHHhccc--------cc
Confidence 76 5789999999999999999999999764 2111 11111 223211 12222 3344443 22
Q ss_pred EecCCCCCCCcCccEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCcccccchHHHHHH
Q 004119 394 KQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWL 462 (773)
Q Consensus 394 K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~gITHviRg~E~~~~~~~q~~L 462 (773)
. ....+.+..||++|+....+++.|.++| .|+|+||+.|+ +|=|..|+.|++ .|+.+...|...
T Consensus 169 ~--~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~f---pHhene~aqs~a 243 (465)
T TIGR00435 169 D--VDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIF---PHHENEIAQSEA 243 (465)
T ss_pred C--cccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeecccccccc---chHHHHHHHHHH
Confidence 2 2233566799999999888888899999 89999999997 666777788876 567777666432
Q ss_pred HHHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCcccc
Q 004119 463 LHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 541 (773)
Q Consensus 463 ~~aLg~~~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~ 541 (773)
..|.+.+.+|.| +++.++|.|||||+|+ +.+++.+.+. |.|+++|.|+++.+++.+- .++
T Consensus 244 --~~g~~~~~~~~h~g~v~~~g~KMSKS~GN---------------~i~~~dll~~-~~~dalR~~ll~~~~~~~l-~fs 304 (465)
T TIGR00435 244 --AFGKQLAKYWMHNGFLMIDNEKMSKSLGN---------------FFTVRDVLKN-YDPEILRYFLLSVHYRSPL-DFS 304 (465)
T ss_pred --hcCCCCCcEEEEeeEEEecCccccccCCC---------------cCCHHHHHHH-CCHHHHHHHHHhCCCCCCC-ccC
Confidence 347666778876 6789999999999998 5799999987 9999999999987776544 578
Q ss_pred HhHHHHHHHH
Q 004119 542 LDRLEYHIRE 551 (773)
Q Consensus 542 ~~~Le~~~r~ 551 (773)
.+.|+++.+.
T Consensus 305 ~~~l~~a~~~ 314 (465)
T TIGR00435 305 EELLEAAKNA 314 (465)
T ss_pred HHHHHHHHHH
Confidence 8777776543
No 33
>PLN02946 cysteine-tRNA ligase
Probab=99.92 E-value=1.1e-25 Score=257.66 Aligned_cols=253 Identities=15% Similarity=0.145 Sum_probs=197.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCCCC-
Q 004119 256 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEP- 316 (773)
Q Consensus 256 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~-------------r~~~e~~~~I~edL~wLGi~p- 316 (773)
.|+|+|++||||+|++++.+.++| .|...|+..|||+|.. .-...|.+.+.++++.||+.+
T Consensus 87 GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p 166 (557)
T PLN02946 87 GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPP 166 (557)
T ss_pred CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 899999999999999999988888 4667899999999953 125679999999999999974
Q ss_pred CCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-HHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEe
Q 004119 317 FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQ 395 (773)
Q Consensus 317 d~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~ 395 (773)
+..+.+|+|++.+.+++++|+++|+||.-..+.. .+.++ +.|+.. .++.. ++|..|. |+
T Consensus 167 ~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f--~~YG~L-s~~~l-------~~l~~g~--------rv-- 226 (557)
T PLN02946 167 SVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKF--PEYGKL-SGRKL-------EDNRAGE--------RV-- 226 (557)
T ss_pred CeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcc--hhhhhc-CCCCh-------hHhhcCC--------CC--
Confidence 5578999999999999999999999996321111 11111 234322 12222 3455554 22
Q ss_pred cCCCCCCCcCccEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCcccccchHHHHHHHH
Q 004119 396 DMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLLH 464 (773)
Q Consensus 396 d~~~~~~~~~D~V~~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~gITHviRg~E~~~~~~~q~~L~~ 464 (773)
+....+.+..||++||...+++|.|.++| .|+|+||..|+ +|-|..|+.|++ .|+.|...|.. .
T Consensus 227 ~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~F---PHHENEiAQse--a 301 (557)
T PLN02946 227 AVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF---PHHENEIAQSC--A 301 (557)
T ss_pred CcccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCC---CcccchHHHHH--H
Confidence 22335677799999999887789999999 99999999997 889999999998 68888888853 2
Q ss_pred HhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHh
Q 004119 465 ALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 543 (773)
Q Consensus 465 aLg~~~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~ 543 (773)
+.|.....+|.| ++++++|.|||||+|| +.|++++.+. |.|+++|.|+++.+++.+- .++++
T Consensus 302 ~~g~~~a~yW~H~G~v~~~G~KMSKSlGN---------------~itl~dll~~-y~~dalR~~lLs~hyr~~l-~fs~e 364 (557)
T PLN02946 302 ACCDSNISYWIHNGFVTVDSEKMSKSLGN---------------FFTIRQVIDL-YHPLALRLFLLGTHYRSPI-NYSDV 364 (557)
T ss_pred HhCCCCCceeeEeeEEEeCCCCcCCcCCC---------------cCCHHHHHHh-cCccceeeeeeccCCCCCc-EecHH
Confidence 346555668887 7899999999999998 5899999986 9999999999998887655 47887
Q ss_pred HHHHHHH
Q 004119 544 RLEYHIR 550 (773)
Q Consensus 544 ~Le~~~r 550 (773)
.|++..+
T Consensus 365 ~L~~a~~ 371 (557)
T PLN02946 365 QLESASE 371 (557)
T ss_pred HHHHHHH
Confidence 7776654
No 34
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.92 E-value=1.2e-24 Score=247.30 Aligned_cols=262 Identities=17% Similarity=0.208 Sum_probs=193.5
Q ss_pred CCeEEEE-eCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCccc-------------chHHHHHHHHHH
Q 004119 248 GGNVLTR-FPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEA-------------EKKEYIDHIEEI 308 (773)
Q Consensus 248 ~g~v~tR-FaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~r-------------~~~e~~~~I~ed 308 (773)
+|.|... .+|+|+|++||||+|++++.+.+||. ++..|+..+||+|+.- -...|.+.+.++
T Consensus 21 ~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~ 100 (463)
T PRK00260 21 PGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED 100 (463)
T ss_pred CCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4556555 59999999999999999999999995 7789999999999642 256899999999
Q ss_pred HHHcCC-CCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-HHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccC
Q 004119 309 VQWMGW-EPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEE 386 (773)
Q Consensus 309 L~wLGi-~pd~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~ 386 (773)
+++||+ .|+..+++|+|.+.+++++++|+++|+||.+.-+.. .+.+. +.|+.. .++.. ++|..|.
T Consensus 101 ~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~--~~yg~l-s~~~~-------~~~~~~~--- 167 (463)
T PRK00260 101 MDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKF--PDYGKL-SGRNL-------DELQAGA--- 167 (463)
T ss_pred HHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccc--cccccC-CCCCH-------HHHhccC---
Confidence 999999 567778899999999999999999999996431111 11111 234322 12222 3454443
Q ss_pred CceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCcccccc
Q 004119 387 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETR 455 (773)
Q Consensus 387 g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~gITHviRg~E~~~~ 455 (773)
|. +....+.+..||++|+....+++.|.++| .|+|+||..|+ +|-|..|+.|++ .|+.+
T Consensus 168 -----~~--~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~Dlif---pHh~n 237 (463)
T PRK00260 168 -----RV--EVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIF---PHHEN 237 (463)
T ss_pred -----cC--CcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCC---CchHh
Confidence 22 22334667799999999888888899999 78999999993 455555555544 37777
Q ss_pred hHHHHHHHHHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCC
Q 004119 456 RASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS 534 (773)
Q Consensus 456 ~~~q~~L~~aLg~~~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s 534 (773)
.-.|-. ...|.+.+.+|.| +++..+|+|||||+|+ ..++..+.+. |.|++||.|+++..+.
T Consensus 238 eiaqs~--a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN---------------~i~~~dll~~-~~~d~lR~~ll~~~~~ 299 (463)
T PRK00260 238 EIAQSE--AATGKPFANYWMHNGFVTVNGEKMSKSLGN---------------FFTIRDLLKK-YDPEVLRFFLLSAHYR 299 (463)
T ss_pred HHHHHH--HhcCCCcceEEEEccEEccCCCcccCcCCC---------------CCCHHHHHHH-cCchHhHHHHHhCCCC
Confidence 666632 2346455668887 6789999999999998 5799999986 9999999999986665
Q ss_pred CCCccccHhHHHHHHHH
Q 004119 535 RSDSLIRLDRLEYHIRE 551 (773)
Q Consensus 535 ~~~~~~~~~~Le~~~r~ 551 (773)
.+- .++.+.|++..+.
T Consensus 300 ~~~-~fs~~~l~~a~~~ 315 (463)
T PRK00260 300 SPL-NFSEEALEQAKKA 315 (463)
T ss_pred CCC-ccCHHHHHHHHHH
Confidence 443 4777666665443
No 35
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.92 E-value=7e-25 Score=247.64 Aligned_cols=249 Identities=14% Similarity=0.163 Sum_probs=196.4
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecC----------Ccc-------------cchHHHHHHHHH
Q 004119 256 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPE-------------AEKKEYIDHIEE 307 (773)
Q Consensus 256 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDT----------Dp~-------------r~~~e~~~~I~e 307 (773)
.|+++.++||||+|++++.+.++| .+...|+.+|+|+ |+. .-...|.+.+.+
T Consensus 28 GpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~~~~f~~ 107 (481)
T PRK14534 28 GPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFD 107 (481)
T ss_pred CCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 788999999999999999888888 3567899999999 642 124678999999
Q ss_pred HHHHcCCCCCC-cCCCchhHHHHHHHHHHHHHcCCcccC-----CCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhh-
Q 004119 308 IVQWMGWEPFK-ITYTSDYFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMR- 380 (773)
Q Consensus 308 dL~wLGi~pd~-~~~qSd~~~~~y~~a~~LI~~G~AY~C-----~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~- 380 (773)
+++.||+.++. .+.+|+|.+.+.+++++|+++|+||.- ||... + +.|... +.+.. ++|.
T Consensus 108 d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~----~--~~YG~l-s~~~l-------~~l~~ 173 (481)
T PRK14534 108 DCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC----F--KSYGQM-AGINL-------NDFKD 173 (481)
T ss_pred HHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc----c--cchhhh-cCCCH-------HHHhh
Confidence 99999998764 567899999999999999999999952 22221 1 233322 12222 2333
Q ss_pred -cCcccCCceEEEEEecCCCCCCCcCccEEEEEe---cCCCCCCCCcc-ccccccccccc----------cccccCCcce
Q 004119 381 -NGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIK---FTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITH 445 (773)
Q Consensus 381 -~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~---~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~gITH 445 (773)
.|. |+ +....+.+..||++|+.. .+.++.|.++| .|+|+||..|+ +|-|..|+.|
T Consensus 174 ~~~~--------~v--~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~Dl 243 (481)
T PRK14534 174 MSVS--------RV--EIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDH 243 (481)
T ss_pred hccC--------cC--CcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEeccccc
Confidence 222 22 222346677999999975 45678888999 89999999997 8899999999
Q ss_pred eecCcccccchHHHHHHHHHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHH
Q 004119 446 SLCTLEFETRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSI 524 (773)
Q Consensus 446 viRg~E~~~~~~~q~~L~~aLg~~~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI 524 (773)
++ .|+.+...|.. -+.|...+.+|.| ++++++|.|||||.|+ +.||+.|.+.|+.|+++
T Consensus 244 iF---PHHene~Aqs~--a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN---------------~i~l~dll~~~~~~~al 303 (481)
T PRK14534 244 IG---VHHINEIAIAE--CYLNKKWCDMFVHGEFLIMEYEKMSKSNNN---------------FITIKDLEDQGFSPLDF 303 (481)
T ss_pred CC---CcchhHHHHHh--hhcCCCcceEEEEecEEEecCceecccCCC---------------cccHHHHHhcCCChhHH
Confidence 98 68899988852 2247778899998 5899999999999998 68999999999999999
Q ss_pred HHHHHHhCCCCCCccccHhHHHHHH
Q 004119 525 NAFVQGIGISRSDSLIRLDRLEYHI 549 (773)
Q Consensus 525 ~~fl~~lG~s~~~~~~~~~~Le~~~ 549 (773)
|.|+++..++.+-+ ++++.|+++.
T Consensus 304 R~~lls~~yr~~l~-Fs~e~l~~a~ 327 (481)
T PRK14534 304 RYFCLTAHYRTQLK-FTFNNLKACK 327 (481)
T ss_pred HHHHHhCCCCCCCC-CCHHHHHHHH
Confidence 99999989887764 8888888775
No 36
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.92 E-value=6.2e-25 Score=242.66 Aligned_cols=257 Identities=15% Similarity=0.064 Sum_probs=195.6
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCC-CC
Q 004119 256 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGW-EP 316 (773)
Q Consensus 256 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~-------------r~~~e~~~~I~edL~wLGi-~p 316 (773)
.|+|+|++||||+|+++..+.++| .+...|+..+||.|.. .-...|.+.+.++++.||+ .|
T Consensus 16 GpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~~ 95 (384)
T PRK12418 16 GITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVLPP 95 (384)
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 799999999999999999888888 3557899999999853 1256788999999999997 67
Q ss_pred CCcCCCchhHHHHHHHHHHHHHcCCcccCCC----CHH-HHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEE
Q 004119 317 FKITYTSDYFQELYELAVELIRRGHAYVDHQ----TPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 391 (773)
Q Consensus 317 d~~~~qSd~~~~~y~~a~~LI~~G~AY~C~c----s~e-el~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~l 391 (773)
+..+++|++.+.+.+++++|+++|+||.-.. +.. ++.+. +.|... .++.. ++|..|...
T Consensus 96 ~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~--~~YG~l-s~~~~-------~~~~~~~~~------ 159 (384)
T PRK12418 96 RDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDAT--PQFGYE-SGYDR-------ATMLELFAE------ 159 (384)
T ss_pred CccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCch--hhcccc-cCCCH-------HHHHhhhcc------
Confidence 8889999999999999999999999996432 111 22222 234322 22333 233332100
Q ss_pred EEEecC-CCCCCCcCccEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCcccccchHHH
Q 004119 392 RMKQDM-QNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASY 459 (773)
Q Consensus 392 R~K~d~-~~~~~~~~D~V~~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~gITHviRg~E~~~~~~~q 459 (773)
|. ++. ...+.+..||+|||...+.+|.|.++| .|+|+||..|+ +|-|.-|+.|++ .|+.|...|
T Consensus 160 ~~-~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~F---PHHeneiaq 235 (384)
T PRK12418 160 RG-GDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIF---PHHEFSAAH 235 (384)
T ss_pred cc-cCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCcccccc---chhHhHHHH
Confidence 10 011 124567799999999887789999999 99999999995 788888888887 578888777
Q ss_pred HHHHHHhCC-CCCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCC
Q 004119 460 FWLLHALGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD 537 (773)
Q Consensus 460 ~~L~~aLg~-~~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~ 537 (773)
.. -+.|- +.+.+|.| ++|+.+|+|||||++| +.|+..+.+.|+.|.++|.||++.+++.+-
T Consensus 236 ~~--a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~ell~~G~d~~~lR~~lls~~yr~~l 298 (384)
T PRK12418 236 AE--AATGERRFARHYVHAGMIGLDGEKMSKSRGN---------------LVFVSRLRAAGVDPAAIRLALLAGHYRADR 298 (384)
T ss_pred HH--HhcCCCCcceEEEECCEECCCCCcccCcCCC---------------cCCHHHHHhccCChhheeEEEeccCCCCCc
Confidence 42 22454 56789999 5799999999999998 579999988999999999999877777665
Q ss_pred ccccHhHHHHHHH
Q 004119 538 SLIRLDRLEYHIR 550 (773)
Q Consensus 538 ~~~~~~~Le~~~r 550 (773)
. ++.+.|++..+
T Consensus 299 ~-fs~e~l~~a~~ 310 (384)
T PRK12418 299 E-WTDAVLAEAEA 310 (384)
T ss_pred c-cCHHHHHHHHH
Confidence 4 77777777544
No 37
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.92 E-value=2.1e-24 Score=244.69 Aligned_cols=254 Identities=17% Similarity=0.213 Sum_probs=195.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecC----------Ccc-------------cchHHHHHHHHH
Q 004119 256 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPE-------------AEKKEYIDHIEE 307 (773)
Q Consensus 256 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDT----------Dp~-------------r~~~e~~~~I~e 307 (773)
.|++++++||||+|+++..+.++| .+...|+.+|+|+ |+. .-...|.+.+.+
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~~~~f~~ 109 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFR 109 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 799999999999999999888888 3567899999999 543 124578999999
Q ss_pred HHHHcCCCC-CCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-HHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCccc
Q 004119 308 IVQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 385 (773)
Q Consensus 308 dL~wLGi~p-d~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~ 385 (773)
+++.||+.+ +..+++++|.+.+.+++++|+++|+||.-..+.. .+..+ +.|... ..+.. ++|..|.
T Consensus 110 d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~--~~YG~L-s~~~~-------~~l~~g~-- 177 (490)
T PRK14536 110 DTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTF--PSYGSL-ASAAV-------EDLQAGA-- 177 (490)
T ss_pred HHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCcc--cchhhh-cCCCH-------HHhhcCC--
Confidence 999999986 5568999999999999999999999996221110 01111 233311 22222 3454443
Q ss_pred CCceEEEEEecCCCCCCCcCccEEEEEec--CC-CCCCCCcc-ccccccccccc----------cccccCCcceeecCcc
Q 004119 386 EGKATLRMKQDMQNDNFNMYDLIAYRIKF--TP-HPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLE 451 (773)
Q Consensus 386 ~g~~~lR~K~d~~~~~~~~~D~V~~R~~~--~~-h~~~gd~~-~~~PtY~fa~~----------VDD~~~gITHviRg~E 451 (773)
|+ +....+.+..||++|+... .+ .+.|.++| .|+|+||..|+ +|-|..|+.+++ .
T Consensus 178 ------~v--~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliF---P 246 (490)
T PRK14536 178 ------RI--EHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIR---V 246 (490)
T ss_pred ------cC--CCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCC---c
Confidence 22 2223466779999998753 22 46788999 89999999997 688888899988 6
Q ss_pred cccchHHHHHHHHHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHH
Q 004119 452 FETRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQG 530 (773)
Q Consensus 452 ~~~~~~~q~~L~~aLg~~~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~ 530 (773)
|+.|...|.. -+.|...+.+|.| ++|+++|.|||||.|+ +.||+.|.+.||.|.++|.|+++
T Consensus 247 HHeneiAqs~--a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN---------------~itl~dll~~g~~~~alR~~lls 309 (490)
T PRK14536 247 HHTNEIAQCE--AATGKPWVRYWLHHEFLLMNKGKMSKSAGQ---------------FLTLSSLQEKGFQPLDYRFFLLG 309 (490)
T ss_pred chhhHHHHHH--HhcCCCcceEEEEcCEEeecCccccccCCC---------------cccHHHHHhcCCCHHHHHHHHHh
Confidence 8888888852 2247777889998 5799999999999998 68999999999999999999999
Q ss_pred hCCCCCCccccHhHHHHHHH
Q 004119 531 IGISRSDSLIRLDRLEYHIR 550 (773)
Q Consensus 531 lG~s~~~~~~~~~~Le~~~r 550 (773)
..++.+-. ++++.|++..+
T Consensus 310 ~~yr~~l~-Fs~e~l~~a~~ 328 (490)
T PRK14536 310 GHYRSQLA-FSWEALKTAKA 328 (490)
T ss_pred CCCCCCCC-CCHHHHHHHHH
Confidence 88877764 88888877765
No 38
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.91 E-value=7.1e-24 Score=244.58 Aligned_cols=252 Identities=15% Similarity=0.172 Sum_probs=193.6
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCccc-------------chHHHHHHHHHHHHHcCCCCC
Q 004119 256 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWEPF 317 (773)
Q Consensus 256 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~r-------------~~~e~~~~I~edL~wLGi~pd 317 (773)
.|+|++++||||+|++++.+.++| .+...|+..+||+|..- -...|.+.+.++++.||+.++
T Consensus 255 GPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p 334 (699)
T PRK14535 255 GMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRP 334 (699)
T ss_pred CCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 799999999999999999888888 35678999999999541 246789999999999999865
Q ss_pred C-cCCCchhHHHHHHHHHHHHHcCCcccC-CCCHH-HHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEE
Q 004119 318 K-ITYTSDYFQELYELAVELIRRGHAYVD-HQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 394 (773)
Q Consensus 318 ~-~~~qSd~~~~~y~~a~~LI~~G~AY~C-~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K 394 (773)
. .+..|+|++.+.+++++|+++|+||.- ..+.. .+..+ +.|... .++.. ++|..|. |..
T Consensus 335 ~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f--~~YG~L-S~~~~-------~~l~~g~--------rve 396 (699)
T PRK14535 335 DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREF--AAYGQL-SGKSL-------DDLRAGE--------RVE 396 (699)
T ss_pred cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccc--cccccc-cCCCh-------HHhcCCC--------ccc
Confidence 4 678999999999999999999999952 11110 11112 234322 12222 3455544 222
Q ss_pred ecCCCCCCCcCccEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCcccccchHHHHHHH
Q 004119 395 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLL 463 (773)
Q Consensus 395 ~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~gITHviRg~E~~~~~~~q~~L~ 463 (773)
.+ ..+.+..||++||...+++|.|.++| .|+|+||..|+ +|-|..|+.|++ .|+.|...|..-
T Consensus 397 ~d--~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiF---PHHENEiAQseA- 470 (699)
T PRK14535 397 VD--GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF---PHHENEIAQSVG- 470 (699)
T ss_pred cc--cccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCC---CCCccHHHHHHH-
Confidence 22 34667799999999888888999999 89999999996 888999999998 689998888531
Q ss_pred HHhCC----------------CCCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHH
Q 004119 464 HALGL----------------YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 526 (773)
Q Consensus 464 ~aLg~----------------~~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~ 526 (773)
+.|. +...+|.| ++++++|+|||||+|| +.|++.+.++ |.|+++|.
T Consensus 471 -~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN---------------~it~~dlLe~-ygpdalRl 533 (699)
T PRK14535 471 -ATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGN---------------FFTIREVLKQ-YDPEVVRF 533 (699)
T ss_pred -hhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCC---------------cCCHHHHHHh-CCHHHHHH
Confidence 2343 13568988 6889999999999998 5799999986 99999999
Q ss_pred HHHHhCCCCCCccccHhHHHHHH
Q 004119 527 FVQGIGISRSDSLIRLDRLEYHI 549 (773)
Q Consensus 527 fl~~lG~s~~~~~~~~~~Le~~~ 549 (773)
|+++.+++.+-. ++.+.|++..
T Consensus 534 ~lLsshYRspL~-fS~e~Le~Ak 555 (699)
T PRK14535 534 FILRAHYRSPLN-YSDAHLDDAK 555 (699)
T ss_pred HHHcCCCCCCCC-cCHHHHHHHH
Confidence 999877766654 7777777654
No 39
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.91 E-value=2.5e-24 Score=239.12 Aligned_cols=256 Identities=16% Similarity=0.071 Sum_probs=191.7
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCCC-C
Q 004119 256 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWE-P 316 (773)
Q Consensus 256 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~-------------r~~~e~~~~I~edL~wLGi~-p 316 (773)
.|+|++++||||+|+++..+.++| .+...|+..+||+|.. .-...|.+.+.++++.||+. |
T Consensus 43 GpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~ 122 (411)
T TIGR03447 43 GITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPP 122 (411)
T ss_pred CCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 799999999999999999999988 4667899999999853 12467889999999999986 7
Q ss_pred CCcCCCchhHHHHHHHHHHHHHcCCcccCCC----CHH-HHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEE
Q 004119 317 FKITYTSDYFQELYELAVELIRRGHAYVDHQ----TPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 391 (773)
Q Consensus 317 d~~~~qSd~~~~~y~~a~~LI~~G~AY~C~c----s~e-el~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~l 391 (773)
+..+++|++.+.+.+++++|+++|+||.-.. +.. ++.+. +.|... .++..+ +|..|...
T Consensus 123 d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~--~~YG~L-s~~~~~-------~~~~~~~~------ 186 (411)
T TIGR03447 123 RDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEAT--EQFGYE-SGYDRA-------TMLELFAE------ 186 (411)
T ss_pred CcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccch--hccccc-cCCCHH-------HHHhhhcc------
Confidence 8889999999999999999999999996432 111 22222 234322 223332 23321000
Q ss_pred E-EEecCCCCCCCcCccEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCcccccchHHH
Q 004119 392 R-MKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASY 459 (773)
Q Consensus 392 R-~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~gITHviRg~E~~~~~~~q 459 (773)
| ...+ ...+.+..||+|||.....++.|.++| .|+|+||..|+ +|-|.-|+.+++ .|+.+...|
T Consensus 187 ~~~~~~-~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLif---pHheneiaq 262 (411)
T TIGR03447 187 RGGDPD-RPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIF---PHHEFSAAH 262 (411)
T ss_pred cccCcc-cccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCcccccc---cchHhHHHH
Confidence 1 1111 124567799999999888889999999 99999999996 566666666665 466666666
Q ss_pred HHHHHHhCC-CCCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCC
Q 004119 460 FWLLHALGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD 537 (773)
Q Consensus 460 ~~L~~aLg~-~~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~ 537 (773)
.. -+.|- +.+.+|.| ++|+.+|+|||||++| +.+++.+.+.|+.|+++|.|+++.+++.+-
T Consensus 263 ~~--A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl 325 (411)
T TIGR03447 263 AE--AATGVRRMARHYVHAGMIGLDGEKMSKSLGN---------------LVFVSKLRAAGVDPAAIRLGLLAGHYRQDR 325 (411)
T ss_pred HH--HhcCCCCcceEEEECCEECcCCCCccCcCCC---------------CCCHHHHHhcCCCcccEEEEEecCCCCCCC
Confidence 42 12455 56889999 6899999999999998 579999999999999999999888887765
Q ss_pred ccccHhHHHHHH
Q 004119 538 SLIRLDRLEYHI 549 (773)
Q Consensus 538 ~~~~~~~Le~~~ 549 (773)
+ ++.+.|++..
T Consensus 326 ~-fs~e~l~~a~ 336 (411)
T TIGR03447 326 D-WTDAVLAEAE 336 (411)
T ss_pred c-cCHHHHHHHH
Confidence 4 6777776653
No 40
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.88 E-value=1.2e-22 Score=238.36 Aligned_cols=283 Identities=13% Similarity=0.136 Sum_probs=199.9
Q ss_pred CcHHHHHHhhhhcCCeEEEEe--CCCCCCcCchhHHHHHHHHHHHHH------HcCCEEEEEeecCCccc----------
Q 004119 235 NTKEVLDKHLEVTGGNVLTRF--PPEPNGYLHIGHAKAMFVDFGLAK------ERGGYCYLRYDDTNPEA---------- 296 (773)
Q Consensus 235 ~~~~~~~~h~~~~~g~v~tRF--aPsPtG~LHIGhaRaal~n~~~Ar------~~~G~~iLRidDTDp~r---------- 296 (773)
||...-++...-..+..|+-| .|+++++.||||||++++.+.++| .|...|+.+|+|+|..-
T Consensus 44 Ntlt~~k~~f~p~~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~ 123 (651)
T PTZ00399 44 NSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLS 123 (651)
T ss_pred ECCCCCccccccCCCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCC
Confidence 443333333333233334445 788889999999999999888887 24478999999999541
Q ss_pred ----chHHHHHHHHHHHHHcCCCC-CCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-HHHHhhhccCCCCCCCCCHH
Q 004119 297 ----EKKEYIDHIEEIVQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIA 370 (773)
Q Consensus 297 ----~~~e~~~~I~edL~wLGi~p-d~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~e-el~~~R~~~~~~~~R~~s~e 370 (773)
-...|++.+.++++.||+.+ +.++++|+|++.+.+++++|+++|+||.-..+.. ++.+++.. ...|..++++
T Consensus 124 ~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~--~~~Yg~L~p~ 201 (651)
T PTZ00399 124 IFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKA--GHVYPKLEPE 201 (651)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccc--hhhHHhhChh
Confidence 13578899999999999986 5688999999999999999999999996433222 23333211 0012223332
Q ss_pred HHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-ccccccccccc----------cccc
Q 004119 371 ESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDS 439 (773)
Q Consensus 371 e~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~ 439 (773)
.. .....|..|.. . +. +......+..||++|+...+++|.|.++| .|+|+||..|+ +|-|
T Consensus 202 ~~-~~~~~~~~g~~---~----l~-~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh 272 (651)
T PTZ00399 202 SV-ADEDRIAEGEG---A----LG-KVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIH 272 (651)
T ss_pred hc-CCHHHHhcccC---C----cc-ccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceee
Confidence 11 11123333321 0 10 11123556699999999998899999999 89999999985 6667
Q ss_pred cCCcceeecCcccccchHHHHHHHHHhCC-CCCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHc
Q 004119 440 IENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 517 (773)
Q Consensus 440 ~~gITHviRg~E~~~~~~~q~~L~~aLg~-~~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrr 517 (773)
..||.+++ .|+.|.-.|--- +.|- +.+.+|.| ++|+++|.|||||.|| +.|+..+.+.
T Consensus 273 ~gG~DL~F---PHHeNEiAQseA--~~~~~~~v~y~~H~G~L~i~G~KMSKSLGN---------------fItp~dlLek 332 (651)
T PTZ00399 273 SGGIDLKF---PHHDNELAQSEA--YFDKHQWVNYFLHSGHLHIKGLKMSKSLKN---------------FITIRQALSK 332 (651)
T ss_pred ccCCCCCC---CcchhHHHHHHH--hhCCCCCCcEEEEEEEEEeccchhhhcCCC---------------cccHHHHHHH
Confidence 77777776 578888777421 2343 45789998 9999999999999998 5799999988
Q ss_pred CCCHHHHHHHHHHhCCCCCCccccHhHHHHHHH
Q 004119 518 GVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 550 (773)
Q Consensus 518 G~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r 550 (773)
|.|++||.|+++.+|.... .++++.+.+...
T Consensus 333 -ygaDaLR~~lLs~~~~~dl-dFS~e~l~~a~~ 363 (651)
T PTZ00399 333 -YTARQIRLLFLLHKWDKPM-NYSDESMDEAIE 363 (651)
T ss_pred -cChHHHHHHHHhcCCCCCC-ccCHHHHHHHHH
Confidence 9999999999877776554 478877766643
No 41
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.1e-22 Score=220.23 Aligned_cols=263 Identities=14% Similarity=0.136 Sum_probs=194.3
Q ss_pred CcHHHHHHhhhhcCCeEEEEe--CCCCCCcCchhHHHHHHHHHHHHH------HcCCEEEEEeecCCcc-----c-----
Q 004119 235 NTKEVLDKHLEVTGGNVLTRF--PPEPNGYLHIGHAKAMFVDFGLAK------ERGGYCYLRYDDTNPE-----A----- 296 (773)
Q Consensus 235 ~~~~~~~~h~~~~~g~v~tRF--aPsPtG~LHIGhaRaal~n~~~Ar------~~~G~~iLRidDTDp~-----r----- 296 (773)
||.-..++-+.-..|.-+|-| .|+.+..-||||||+++--+.+-| .|+..|+++|+|+|.+ |
T Consensus 39 NslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~ 118 (586)
T KOG2007|consen 39 NSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMG 118 (586)
T ss_pred eccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhc
Confidence 555444444444455557888 667778899999999986566655 4788999999999954 2
Q ss_pred ch--------HHHHHHHHHHHHHcCCCC-CCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-HHHHhhhccCCCCCCC
Q 004119 297 EK--------KEYIDHIEEIVQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRD 366 (773)
Q Consensus 297 ~~--------~e~~~~I~edL~wLGi~p-d~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~e-el~~~R~~~~~~~~R~ 366 (773)
+. .-|++.+..||..|++-| +-.++.|+|++++.++++++|++|.||+...+.. ++.+ ++..|..
T Consensus 119 e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~k-----f~~~YgK 193 (586)
T KOG2007|consen 119 EKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDK-----FPHSYGK 193 (586)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccc-----ccchhhh
Confidence 10 136789999999999875 6788999999999999999999999998755443 2222 2222333
Q ss_pred CCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-ccccccccccc----------
Q 004119 367 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC---------- 435 (773)
Q Consensus 367 ~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~-~~~PtY~fa~~---------- 435 (773)
+.-+ + +.+..| +|..+ .+.+.+..||++|+.++++.|.|.++| .|.|+||..|+
T Consensus 194 L~G~--~---~~~~~g---Eg~l~-------ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~ 258 (586)
T KOG2007|consen 194 LVGQ--R---KNLQEG---EGVLS-------DSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQ 258 (586)
T ss_pred hcCc--h---hhcccC---cCccc-------cccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccc
Confidence 3210 0 223333 33332 134567799999999999999999999 99999999997
Q ss_pred cccccCCcceeecCcccccchHHHHHHHHHhCCC-CCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHH
Q 004119 436 IVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAG 513 (773)
Q Consensus 436 VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~-~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~ 513 (773)
+|-|-.||...+ .|+.|...|.- -++.-. -..||-| |||++.|.||||+..| +.||+.
T Consensus 259 lDIH~GG~DL~F---PHHeNEiAQ~e--A~~~~~~wVnYflHtGhL~i~g~KMSKSLkN---------------FiTIke 318 (586)
T KOG2007|consen 259 LDIHGGGIDLAF---PHHENEIAQSE--AAFDDSQWVNYFLHTGHLTINGEKMSKSLKN---------------FITIKE 318 (586)
T ss_pred cceecCcccccC---CCcccHHHHHH--HHhcCCccceeEEEcCeeeeccchhhhhhcc---------------ceeHHH
Confidence 667777777776 67888887731 222221 2567877 8999999999999998 689999
Q ss_pred HHHcCCCHHHHHHHHHHhCCCCCCc
Q 004119 514 LRRRGVTSTSINAFVQGIGISRSDS 538 (773)
Q Consensus 514 lrrrG~~PeAI~~fl~~lG~s~~~~ 538 (773)
+... |+|.++|-||++..|..+-+
T Consensus 319 ~Lk~-~sp~qLRl~fl~~~wr~~ld 342 (586)
T KOG2007|consen 319 ALKK-YSPRQLRLAFLLHQWRSPLD 342 (586)
T ss_pred HHHh-cCHHHHHHHHHHHHhcCcCC
Confidence 8876 99999999999999977654
No 42
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.74 E-value=1.8e-17 Score=170.38 Aligned_cols=184 Identities=19% Similarity=0.130 Sum_probs=140.0
Q ss_pred EEEEe-CCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEEeecCCcc------------cchHHHHHHHHHHHHHc
Q 004119 251 VLTRF-PPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTNPE------------AEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar~--~~G---~~iLRidDTDp~------------r~~~e~~~~I~edL~wL 312 (773)
|+.=| +|+|||+|||||+|++++-+.+||. +.| .+.--++|.+.. .-...+.+.+.+++++|
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L 81 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRL 81 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444 8999999999999999998888883 334 444444555532 23456788899999999
Q ss_pred CCCCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEE
Q 004119 313 GWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLR 392 (773)
Q Consensus 313 Gi~pd~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR 392 (773)
|+.+|..++.|++.+.+.+.++.|+++|.+|.-. |..++.
T Consensus 82 ~i~~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~----------------------------------------g~~~~~ 121 (212)
T cd00671 82 DVRFDVWFGESSYLGLMGKVVELLEELGLLYEED----------------------------------------GALWLD 121 (212)
T ss_pred CCcCceecchhhhhhHHHHHHHHHHHCCCEEEeC----------------------------------------CcEEEe
Confidence 9999988899998888889999999999998311 111111
Q ss_pred EEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccc---cccccccccCCccee--ecCcccccchHHHHHHHHHhC
Q 004119 393 MKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCTLEFETRRASYFWLLHALG 467 (773)
Q Consensus 393 ~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~---fa~~VDD~~~gITHv--iRg~E~~~~~~~q~~L~~aLg 467 (773)
+ + ......|+|+.|. +| .|||+ +|+.++++.+++||+ ++|.|+..+.+++..++++||
T Consensus 122 ~--~---~~~~~~d~vl~rs-------dG-----~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg 184 (212)
T cd00671 122 L--T---EFGDDKDRVLVRS-------DG-----TYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELLG 184 (212)
T ss_pred c--h---hhCCCCCeEEEEC-------CC-----CccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHHHHHcC
Confidence 1 0 0012358898887 55 79998 799999999999999 999999999999999999999
Q ss_pred CC-CCceeee--eeccCC-Cceeccccc
Q 004119 468 LY-QPYVWEY--SRLNVS-NTVMSKRKL 491 (773)
Q Consensus 468 ~~-~P~~w~f--~~Ln~~-g~kLSKRk~ 491 (773)
+. .|.+.|. +.++.. |.|||||+|
T Consensus 185 ~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 185 YDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred CCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 86 5555553 566554 999999985
No 43
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.59 E-value=2.6e-14 Score=164.47 Aligned_cols=272 Identities=19% Similarity=0.102 Sum_probs=161.4
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~-------------r~~~e~~~~I~edL~wL 312 (773)
++|==+|+|||.+||||+|+.+..+.++|. +...|+.-+||.+.. .-...|.+.|.++|+.|
T Consensus 4 ~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 83 (511)
T PRK11893 4 YITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEAL 83 (511)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 345558999999999999999999999884 455788888888742 23567889999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc----------C--CCCHHHHHHhhhccCCCCCCCCCHH----HH--
Q 004119 313 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV----------D--HQTPEEIKEYREKKMNSPWRDRPIA----ES-- 372 (773)
Q Consensus 313 Gi~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~----------C--~cs~eel~~~R~~~~~~~~R~~s~e----e~-- 372 (773)
|+.+|..++.++ +.+...++..+|.++|++|. | +++..++..-+ .+-..|.. +++ ++
T Consensus 84 ~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~--p~~~~~~~-~~~~~~~~~~f 160 (511)
T PRK11893 84 NISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDG--YRCPPTGA-PVEWVEEESYF 160 (511)
T ss_pred CCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCC--CCCCCCCC-cceEEecCeEE
Confidence 999987656555 88888899999999999986 2 33444443210 00001111 000 00
Q ss_pred --hHHHHHhhcCcccCCceEEEEEecC------CCCCCCcCccEEEE-EecCCCCCCCC------cc----------ccc
Q 004119 373 --LKLFEDMRNGRIEEGKATLRMKQDM------QNDNFNMYDLIAYR-IKFTPHPHAGD------KW----------CIY 427 (773)
Q Consensus 373 --l~~f~~m~~G~~~~g~~~lR~K~d~------~~~~~~~~D~V~~R-~~~~~h~~~gd------~~----------~~~ 427 (773)
+..|.+........+.. +...+. ..-+....|+.+.| -..=+.|..++ .| .++
T Consensus 161 ~~l~~~~~~l~~~~~~~~~--~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~ 238 (511)
T PRK11893 161 FRLSKYQDKLLELYEANPD--FIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGY 238 (511)
T ss_pred EEcHHHHHHHHHHHHhCCC--ccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhcc
Confidence 00111100000000000 000000 00012357888888 32212222222 24 122
Q ss_pred cc----------cccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceee-eeeccCCCceecccccccccc
Q 004119 428 PS----------YDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWE-YSRLNVSNTVMSKRKLNFLVT 496 (773)
Q Consensus 428 Pt----------Y~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~-f~~Ln~~g~kLSKRk~~~lv~ 496 (773)
|. +.+ +.|-|.+|+.++. .+...+..++.+++...|..|. ++++..+|+|||||+|+
T Consensus 239 p~~~~~~~~~~~~~~--~~D~~~~G~D~~~------~h~~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN---- 306 (511)
T PRK11893 239 PDDEELLAELFNKYW--PADVHLIGKDILR------FHAVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGN---- 306 (511)
T ss_pred ccccccchhHHHhcC--CCcceEecccccc------cchhHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCc----
Confidence 21 111 1233444444432 1222222344566777786655 57888999999999998
Q ss_pred cCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHH
Q 004119 497 NKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 551 (773)
Q Consensus 497 ~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~ 551 (773)
..++..+.+. |.+.++|.|+++.+....+..++++.+.+..+.
T Consensus 307 -----------~i~~~dll~~-~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~ 349 (511)
T PRK11893 307 -----------VIDPFDLVDE-YGVDAVRYFLLREIPFGQDGDFSREAFINRINA 349 (511)
T ss_pred -----------EEcHHHHHHH-cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHH
Confidence 4788888887 999999999998865445556888888665544
No 44
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.59 E-value=5.9e-15 Score=170.11 Aligned_cols=227 Identities=19% Similarity=0.189 Sum_probs=155.8
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEEeecCCc-------------ccchHHHHHHHHHH
Q 004119 248 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTNP-------------EAEKKEYIDHIEEI 308 (773)
Q Consensus 248 ~g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar~--~~G---~~iLRidDTDp-------------~r~~~e~~~~I~ed 308 (773)
+++|++-| +|+|||+|||||+|++++.+.+||. +.| .++.-++|.+. ....+.+.+.|.++
T Consensus 110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (507)
T PRK01611 110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKED 189 (507)
T ss_pred CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999 9999999999999999999999984 445 45555588773 23467889999999
Q ss_pred HHHcCCCCCCcCCCchhH--HHHHHHHHHHHHcCCcc-cCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCccc
Q 004119 309 VQWMGWEPFKITYTSDYF--QELYELAVELIRRGHAY-VDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 385 (773)
Q Consensus 309 L~wLGi~pd~~~~qSd~~--~~~y~~a~~LI~~G~AY-~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~ 385 (773)
+++||+.+|..++.|+.+ +.+.+..+.|.++|.+| .-
T Consensus 190 l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~---------------------------------------- 229 (507)
T PRK01611 190 LDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVES---------------------------------------- 229 (507)
T ss_pred HHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEee----------------------------------------
Confidence 999999998766656543 35677889999999998 21
Q ss_pred CCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccc---cccccccccCCccee--ecCcccccchHHHH
Q 004119 386 EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCTLEFETRRASYF 460 (773)
Q Consensus 386 ~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~---fa~~VDD~~~gITHv--iRg~E~~~~~~~q~ 460 (773)
+|..+++. + ..+. -.|+|+.|. +| .|||. +|..++-+.. .+++ |.|.+|..+-++..
T Consensus 230 ~Ga~~~~~--~-~~~~--~~~~vl~ks-------dG-----~~~Y~t~Dia~~~~k~~~-~d~~i~V~g~~q~~hf~~~~ 291 (507)
T PRK01611 230 DGALWVRL--T-EFGD--DKDRVLIKS-------DG-----TYTYFTRDIAYHLYKFER-FDRVIYVVGADHHGHFKRLK 291 (507)
T ss_pred CCcEEEEc--h-hhCC--CCCeEEEEC-------CC-----CccchHHHHHHHHHHHhh-cCEEEEEECCChHHHHHHHH
Confidence 01111111 1 0010 137899987 44 46665 3332222211 2344 67999999999999
Q ss_pred HHHHHhCCCCC--ceeee---ee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCH-------------
Q 004119 461 WLLHALGLYQP--YVWEY---SR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTS------------- 521 (773)
Q Consensus 461 ~L~~aLg~~~P--~~w~f---~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~P------------- 521 (773)
.+.++||+..+ ..|.| ++ ++.+|.|||||+|+ ..++.+|.++++..
T Consensus 292 ~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn---------------~i~l~dll~~a~g~~~~~~~~~~~a~~ 356 (507)
T PRK01611 292 AALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGN---------------VVTLDDLLDEAVGRARELIEEKEIAEA 356 (507)
T ss_pred HHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCc---------------eeEHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999998644 22444 44 35588999999998 47899999887766
Q ss_pred ---HHHHHHHHHhCCCCCCccccHhHHHHH
Q 004119 522 ---TSINAFVQGIGISRSDSLIRLDRLEYH 548 (773)
Q Consensus 522 ---eAI~~fl~~lG~s~~~~~~~~~~Le~~ 548 (773)
.||+.|+++.-. ..+..++|+.+.+.
T Consensus 357 vgidAiR~~~L~~~~-~~~~~Fd~~~~~~~ 385 (507)
T PRK01611 357 VGIDAVRYFDLSRSR-DKDLDFDLDLALSF 385 (507)
T ss_pred hccceeEehhhhcCC-CCCCccCHHHHHhh
Confidence 777877765532 22335777664433
No 45
>PF04557 tRNA_synt_1c_R2: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 ; InterPro: IPR007638 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a region found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=99.56 E-value=1e-15 Score=135.34 Aligned_cols=82 Identities=41% Similarity=0.500 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhccCCCcchh--hccccCCCCCCCCccccCCCCCCCCCCCCccccccc
Q 004119 146 IVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDE--DKKFANDAPVQLPEEDLFPISNFPPPEENYKVHTEI 223 (773)
Q Consensus 146 ~vK~~vd~~~~~llgpk~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (773)
+||++||+||++||||||++|+++++|+++++.++......+ .......+.++|++|||+. ++||+||||++
T Consensus 1 avK~evD~qil~LLGPKteaD~~k~~K~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~-~~fHkPGEN~k----- 74 (84)
T PF04557_consen 1 AVKNEVDAQILELLGPKTEADLVKKKKKKKKKKKKAKKKKKEAKANAEEESERAMFEEGFLGD-LHFHKPGENYK----- 74 (84)
T ss_dssp -HHHHHHHHHHHHH-S--GGG-----------------------------------------------------------
T ss_pred CcHHHHHHHHHHHhCCCccccccCCCCCCCCCcccccccccccccccCCCCCccchhhhhhcc-cCCCCccccCC-----
Confidence 589999999999999999999998866643321111001111 1112345678999999997 88999999955
Q ss_pred ccCCCcceeecCcHHHHHHh
Q 004119 224 PFSDGSVLICCNTKEVLDKH 243 (773)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~h 243 (773)
+||+++|.+|
T Consensus 75 ----------pqt~~~L~~h 84 (84)
T PF04557_consen 75 ----------PQTMPLLKKH 84 (84)
T ss_dssp --------------------
T ss_pred ----------cchHHHHhcC
Confidence 3557777776
No 46
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.45 E-value=1.8e-12 Score=140.59 Aligned_cols=243 Identities=18% Similarity=0.155 Sum_probs=140.5
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcc------c--------------------chHHH
Q 004119 253 TRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE------A--------------------EKKEY 301 (773)
Q Consensus 253 tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~------r--------------------~~~e~ 301 (773)
+==+|+|||.+||||+++.++-+.++|. +...|+.-+|+.+.. + -..++
T Consensus 5 ~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (312)
T cd00668 5 TTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEM 84 (312)
T ss_pred ecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHH
Confidence 3348999999999999998888888873 444566677665521 1 13467
Q ss_pred HHHHHHHHHHcCCCCC--Cc--CCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHH
Q 004119 302 IDHIEEIVQWMGWEPF--KI--TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFE 377 (773)
Q Consensus 302 ~~~I~edL~wLGi~pd--~~--~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~ 377 (773)
.+.|.++++.||+..| .. +...+|.+...+...+|.++|++|.-.-.. +.. ..-+-+.+ +-.-++.+
T Consensus 85 ~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------~~~--~~~f~~~~-~l~~~~~~ 155 (312)
T cd00668 85 SGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------RIT--EQWFFDMP-KFKEKLLK 155 (312)
T ss_pred HHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------Eee--eeEEEEcH-HHHHHHHH
Confidence 8899999999999765 43 444567777888899999999999743211 000 00000000 00001122
Q ss_pred HhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccccccccc---C-------------
Q 004119 378 DMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSI---E------------- 441 (773)
Q Consensus 378 ~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~---~------------- 441 (773)
.+..+...+. +.|.....=-.+..|+.+.|-.. || .+.|++++-|=.|=++ +
T Consensus 156 ~~~~~~~~p~----~~~~~~~~~l~~~~d~~isR~~~-----WG---~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~ 223 (312)
T cd00668 156 ALRRGKIVPE----HVKNRMEAWLESLLDWAISRQRY-----WG---TPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKD 223 (312)
T ss_pred HHhcCCcCCh----HHHHHHHHHHhCCCCeEEeccCC-----CC---CcCCcccccchhhccHHHHHHcCCCccchhhhh
Confidence 2222221000 00000000000123888877421 33 3456666666111110 0
Q ss_pred --CcceeecCcccc-cchHHHHHHHHHhCCC--CCceeeeeeccCCC-ceecccccccccccCccCCCCCcccccHHHHH
Q 004119 442 --NITHSLCTLEFE-TRRASYFWLLHALGLY--QPYVWEYSRLNVSN-TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLR 515 (773)
Q Consensus 442 --gITHviRg~E~~-~~~~~q~~L~~aLg~~--~P~~w~f~~Ln~~g-~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lr 515 (773)
..+--+=|.|.. .+.......+.+++.+ ...+|.|++++.+| .|||||+|+ ..++..+.
T Consensus 224 ~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn---------------~v~~~d~~ 288 (312)
T cd00668 224 SYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGN---------------VIDPSDVV 288 (312)
T ss_pred cCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCC---------------cCCHHHHH
Confidence 111111244544 3333334444566643 33577788888877 999999998 47889988
Q ss_pred HcCCCHHHHHHHHHHhC
Q 004119 516 RRGVTSTSINAFVQGIG 532 (773)
Q Consensus 516 rrG~~PeAI~~fl~~lG 532 (773)
+. |.|+|+|.|++..+
T Consensus 289 ~~-~~~da~R~~l~~~~ 304 (312)
T cd00668 289 EK-YGADALRYYLTSLA 304 (312)
T ss_pred HH-cCcHHHHHHHHhcC
Confidence 87 99999999998766
No 47
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.42 E-value=3.7e-13 Score=129.82 Aligned_cols=133 Identities=21% Similarity=0.158 Sum_probs=101.3
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHHc-----CCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchhH
Q 004119 252 LTRFPPEPNGYLHIGHAKAMFVDFGLAKER-----GGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYF 326 (773)
Q Consensus 252 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~-----~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~~~~qSd~~ 326 (773)
++..+|+|||.+||||+|.+++.+.+||.+ +..++..+||.+.....+....
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~----------------------- 57 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK----------------------- 57 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-----------------------
Confidence 467899999999999999999999999965 8899999999997655443222
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCc
Q 004119 327 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 406 (773)
Q Consensus 327 ~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D 406 (773)
.++.+++.. .+...|.+...
T Consensus 58 -------------------~~~~~~~~~----------------~~~~~~~~~~~------------------------- 77 (143)
T cd00802 58 -------------------GENAKAFVE----------------RWIERIKEDVE------------------------- 77 (143)
T ss_pred -------------------CCCHHHHHH----------------HHHHHHHHHHH-------------------------
Confidence 112222211 11111111100
Q ss_pred cEEEEEecCCCCCCCCccccccccccccccccccCCc---ceeecCcccccchHHHHHHHHHhCCC-CCceeeeeeccC-
Q 004119 407 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENI---THSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNV- 481 (773)
Q Consensus 407 ~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gI---THviRg~E~~~~~~~q~~L~~aLg~~-~P~~w~f~~Ln~- 481 (773)
|++.|++|+...++ ||.++|.|+..|...+.++++++|+. .|...+|+++..
T Consensus 78 -----------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~ 134 (143)
T cd00802 78 -----------------------YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGA 134 (143)
T ss_pred -----------------------HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECC
Confidence 99999999999999 99999999999999999999999875 577777888876
Q ss_pred CCceecccc
Q 004119 482 SNTVMSKRK 490 (773)
Q Consensus 482 ~g~kLSKRk 490 (773)
+|+|||||+
T Consensus 135 ~g~KmSks~ 143 (143)
T cd00802 135 DGTKMSKSK 143 (143)
T ss_pred CCCcCCCCC
Confidence 559999995
No 48
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.38 E-value=1.4e-11 Score=134.35 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=74.6
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCc-------------ccchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp-------------~r~~~e~~~~I~edL~wL 312 (773)
++|==+|.|||.+||||+++.++.+.++|. +...|+..+||.+. ..-...+.+.|.++++.|
T Consensus 3 ~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 82 (319)
T cd00814 3 LITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWL 82 (319)
T ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 345557999999999999999999999983 33567777787763 223567899999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 313 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 313 Gi~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
|+.+|..++.++ +.+...+..++|.++|.+|.
T Consensus 83 gI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~ 116 (319)
T cd00814 83 NISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYE 116 (319)
T ss_pred CCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 999987655554 66677788999999999985
No 49
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.36 E-value=1.2e-11 Score=143.44 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=75.7
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cC---CEEEEEeecCCc-------------ccchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RG---GYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~---G~~iLRidDTDp-------------~r~~~e~~~~I~edL~wL 312 (773)
++|--+|.|||.+||||+++.+..+.+||. .. ..|+.-+||.+. ......+.+.|.+++++|
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 81 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL 81 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 567789999999999999999999999983 33 456667777652 233567899999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 313 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 313 Gi~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
|+.+|..++.++ |.+.+.+...+|.++|++|.
T Consensus 82 gI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~ 115 (530)
T TIGR00398 82 NISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYE 115 (530)
T ss_pred CCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999987555444 77778889999999999883
No 50
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.32 E-value=7.6e-12 Score=129.23 Aligned_cols=163 Identities=14% Similarity=0.073 Sum_probs=107.2
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCccc-------------chHHHHHHHHHHHHHcCCCC
Q 004119 255 FPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWEP 316 (773)
Q Consensus 255 FaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~r-------------~~~e~~~~I~edL~wLGi~p 316 (773)
..|.|+|.+||||+|+.++.+.+||. +...|+..+||.+..- -...+.+.+.++++.||+.+
T Consensus 26 ~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l~i~~ 105 (213)
T cd00672 26 CGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKALNVLP 105 (213)
T ss_pred eCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 47999999999999999999999983 4567999999998431 13345555556666666654
Q ss_pred -CCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEe
Q 004119 317 -FKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQ 395 (773)
Q Consensus 317 -d~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~ 395 (773)
|..+++ +--.|+ .|.
T Consensus 106 ~d~~~rt--------------------Wh~ec~-----------------------------am~--------------- 121 (213)
T cd00672 106 PDVVPRV--------------------WHIECS-----------------------------AMA--------------- 121 (213)
T ss_pred CCcceee--------------------hhHHHH-----------------------------HHH---------------
Confidence 333333 000000 010
Q ss_pred cCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHH-hCCCCCcee
Q 004119 396 DMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHA-LGLYQPYVW 474 (773)
Q Consensus 396 d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~a-Lg~~~P~~w 474 (773)
+-.|...+|-|..|+.|++ .|+.+...|. .+ .|-+.+.+|
T Consensus 122 ---------------------------------~~~lg~~~dih~~G~Dl~f---pH~~~~~a~~---~a~~g~~~~~~~ 162 (213)
T cd00672 122 ---------------------------------MKYLGETFDIHGGGVDLIF---PHHENEIAQS---EAATGKPFARYW 162 (213)
T ss_pred ---------------------------------HHHcCCCccEEeecCCCCc---ChHHHHHHHH---HHHhCCCCCcEE
Confidence 0001112445555666665 3555554442 33 244557788
Q ss_pred ee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCC
Q 004119 475 EY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 536 (773)
Q Consensus 475 ~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~ 536 (773)
.+ +.++.+|.|||||+|+ ..++.++.+. |.|+|+|.|++...+...
T Consensus 163 ~h~~~v~~~g~KMSKs~Gn---------------~v~~~dll~~-~~~da~R~~~l~~~~~~~ 209 (213)
T cd00672 163 LHTGHLTIDGEKMSKSLGN---------------FITVRDALKK-YDPEVLRLALLSSHYRSP 209 (213)
T ss_pred EEEEEEeccCcchhhcCCC---------------ccCHHHHHHH-cCHHHHHHHHHhCCcCCC
Confidence 87 5689999999999998 5789999885 999999999988776554
No 51
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.21 E-value=3.2e-10 Score=135.18 Aligned_cols=94 Identities=19% Similarity=0.119 Sum_probs=72.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------cccchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----------------p~r~~~e~~~~I~edL~wL 312 (773)
++|==+|.|||.+||||+++.++.+.+||. ..|.=++-+..|| |......|.+.+.+++++|
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 84 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGF 84 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 344457899999999999999999999984 3453333333333 2234567999999999999
Q ss_pred CCCCCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 004119 313 GWEPFKITYTS--DYFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 313 Gi~pd~~~~qS--d~~~~~y~~a~~LI~~G~AY~ 344 (773)
|+.+|..++++ +|.+...++..+|+++|.+|.
T Consensus 85 ~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~ 118 (673)
T PRK00133 85 GISFDNYGSTHSEENRELAQEIYLKLKENGYIYE 118 (673)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 99998765555 588888899999999999885
No 52
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.19 E-value=2e-10 Score=134.13 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=75.2
Q ss_pred EEEEeCCCCCCcCchhHHHHH-HHHHHHHHH-----cCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHH
Q 004119 251 VLTRFPPEPNGYLHIGHAKAM-FVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQW 311 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaa-l~n~~~Ar~-----~~G~~iLRidDTDp~-------------r~~~e~~~~I~edL~w 311 (773)
++|==+|.|||.|||||+++. +..+.+||. ++..|+.-+||.+.. .-..+|.+.+.++++.
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 85 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK 85 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 455568999999999999998 888888883 334566666666522 1246789999999999
Q ss_pred cCCCCCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 004119 312 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 312 LGi~pd~~~~qS--d~~~~~y~~a~~LI~~G~AY~ 344 (773)
||+.+|..++++ +|.+...+...+|.++|++|.
T Consensus 86 l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~ 120 (556)
T PRK12268 86 LGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYK 120 (556)
T ss_pred cCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 999999877777 788888899999999999985
No 53
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.17 E-value=5.3e-10 Score=123.07 Aligned_cols=91 Identities=22% Similarity=0.234 Sum_probs=71.4
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeec----CCcc--------------------------cchHH
Q 004119 256 PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDD----TNPE--------------------------AEKKE 300 (773)
Q Consensus 256 aPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidD----TDp~--------------------------r~~~e 300 (773)
||+|||.+|||||++.++.+.++|. +...|+.-+|| ++.+ .-..+
T Consensus 9 pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T cd00818 9 PPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALR 88 (338)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHH
Confidence 8999999999999999999999883 34456677776 4321 11346
Q ss_pred HHHHHHHHHHHcCC--CCCC--cCCCchhHHHHHHHHHHHHHcCCcccCC
Q 004119 301 YIDHIEEIVQWMGW--EPFK--ITYTSDYFQELYELAVELIRRGHAYVDH 346 (773)
Q Consensus 301 ~~~~I~edL~wLGi--~pd~--~~~qSd~~~~~y~~a~~LI~~G~AY~C~ 346 (773)
|.+.+.++++.||+ .|+. .|...+|.+...+...+|+++|++|.-.
T Consensus 89 ~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~ 138 (338)
T cd00818 89 YVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGY 138 (338)
T ss_pred HHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccC
Confidence 78899999999999 5654 4456688888999999999999999643
No 54
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.17 E-value=1.4e-09 Score=129.32 Aligned_cols=94 Identities=22% Similarity=0.216 Sum_probs=73.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEEeecCCc-------------ccchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G---~~iLRidDTDp-------------~r~~~e~~~~I~edL~wL 312 (773)
++|==.|.|||.+||||+++.+..+.++|. ..| .|+.-.||.+. ..-...|.+.|.+++++|
T Consensus 7 ~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~l 86 (648)
T PRK12267 7 YITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKL 86 (648)
T ss_pred EEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 456667999999999999999999999983 345 44444454442 223567899999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 313 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 313 Gi~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
|+.+|..++.++ |.....+...+|.++|++|.
T Consensus 87 gI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~ 120 (648)
T PRK12267 87 DISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYK 120 (648)
T ss_pred CCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999998777776 66666778889999999886
No 55
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.16 E-value=4.9e-10 Score=129.44 Aligned_cols=252 Identities=15% Similarity=0.167 Sum_probs=147.6
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCccc----------------------------
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEA---------------------------- 296 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~r---------------------------- 296 (773)
.++.-=+.+|||.+||||++.++..+.++|. +...|+.=-||.|+-|
T Consensus 24 ~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G 103 (510)
T PRK00750 24 PVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG 103 (510)
T ss_pred cEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence 3777778899999999999999999988883 4456777778888521
Q ss_pred ----chHHHHHHHHHHHHHcCCCCCCcCCCch-hHH-HHHHHHHHHH-HcCCcccCCCCHHHHHHhhhccCCCCCC-CCC
Q 004119 297 ----EKKEYIDHIEEIVQWMGWEPFKITYTSD-YFQ-ELYELAVELI-RRGHAYVDHQTPEEIKEYREKKMNSPWR-DRP 368 (773)
Q Consensus 297 ----~~~e~~~~I~edL~wLGi~pd~~~~qSd-~~~-~~y~~a~~LI-~~G~AY~C~cs~eel~~~R~~~~~~~~R-~~s 368 (773)
..+.|.+.+.+.++.+|++++- +++++ |-. .|-+.+...+ +.+.. .+-|...++...+..|- -++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~gi~~d~-~~~t~~y~~g~~~~~i~~~l~~~~~i------~~il~~~~~~~~~~~~~P~~p 176 (510)
T PRK00750 104 CHESYAEHFNAPLREFLDRFGIEYEF-ISATECYKSGRYDEAILTALENRDEI------MEILLPYLGEERQATYSPFLP 176 (510)
T ss_pred CchHHHHHHHHHHHHHHHHcCCceEE-EehhhhhccCchHHHHHHHHHhHHHH------HHHHHHhcCCccCCCeeeeee
Confidence 2345677778889999998773 33333 111 1223332222 22222 12333443321111000 011
Q ss_pred HHHHhHHHHHhhcCcccCCceEEEE-EecCCCCCCCcCccEEEEEecCCCC-----CCCC---cccc-cccccccccccc
Q 004119 369 IAESLKLFEDMRNGRIEEGKATLRM-KQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---KWCI-YPSYDYAHCIVD 438 (773)
Q Consensus 369 ~ee~l~~f~~m~~G~~~~g~~~lR~-K~d~~~~~~~~~D~V~~R~~~~~h~-----~~gd---~~~~-~PtY~fa~~VDD 438 (773)
+.++ -|+.. +..+ ..|... --|-|++. .+|. +.|. .|++ ||+==
T Consensus 177 ic~~--------cg~~~----~~~~~~~d~~~------~~v~y~~~-cG~~~~~~~~~g~~KL~Wr~dW~~rW------- 230 (510)
T PRK00750 177 ICPK--------CGKVL----TTPVISYDAEA------GTVTYDCE-CGHEGEVPVTGGHGKLQWKVDWPMRW------- 230 (510)
T ss_pred eCCC--------CCccc----eEEEEEEeCCC------CEEEEEcC-CCCEEEEecCCCCcccCCCCCcHHHH-------
Confidence 1110 11110 0111 112110 12445442 2221 1111 2432 22210
Q ss_pred ccCCcceeecCccccc-chHHHHHHHH-HhCCCCCceeeeeeccCC-CceecccccccccccCccCCCCCcccccHHHHH
Q 004119 439 SIENITHSLCTLEFET-RRASYFWLLH-ALGLYQPYVWEYSRLNVS-NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLR 515 (773)
Q Consensus 439 ~~~gITHviRg~E~~~-~~~~q~~L~~-aLg~~~P~~w~f~~Ln~~-g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lr 515 (773)
...||+....|.||.. +...+..+++ .||...|....|+++..+ |.|||||+|+ ..++..+.
T Consensus 231 ~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN---------------~i~~~d~l 295 (510)
T PRK00750 231 AALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGN---------------VITIEDWL 295 (510)
T ss_pred HHcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCC---------------ccCHHHHH
Confidence 2368999999999999 9999999998 999999988888888776 9999999998 46888888
Q ss_pred HcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHh
Q 004119 516 RRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREE 552 (773)
Q Consensus 516 rrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~ 552 (773)
+. ++|++++.|+..-.-...+..+++ |..+...|
T Consensus 296 ~~-~~pd~lR~~l~~~~~~~~~~~f~~--l~~~~dey 329 (510)
T PRK00750 296 EY-APPESLRLFMFARPKPAKRLDFDV--IPKLVDEY 329 (510)
T ss_pred HH-CCHHHHHHHHHhCCCCCCCCcccH--HHHHHHHH
Confidence 76 999999988764332222223443 55555444
No 56
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.16 E-value=2.5e-10 Score=124.40 Aligned_cols=93 Identities=23% Similarity=0.265 Sum_probs=67.8
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCccc-------------chHHHHHHHHHHHHHcC
Q 004119 252 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMG 313 (773)
Q Consensus 252 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~r-------------~~~e~~~~I~edL~wLG 313 (773)
+|==+|.|||.+||||+|+.++.+.+||. +...|+.-+||.+..- -.+++.+.+.++++.||
T Consensus 4 it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lg 83 (314)
T cd00812 4 ILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMG 83 (314)
T ss_pred EecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 34447999999999999999999998883 4456888888887321 24688999999999999
Q ss_pred CCCCC--cCCC-ch-hHHHHHHHHHHHHHcCCccc
Q 004119 314 WEPFK--ITYT-SD-YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 314 i~pd~--~~~q-Sd-~~~~~y~~a~~LI~~G~AY~ 344 (773)
+.+|- ...+ +. +.+.......+|.++|.+|.
T Consensus 84 i~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~ 118 (314)
T cd00812 84 FSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYK 118 (314)
T ss_pred cceecccccccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 98762 2222 22 22222334559999999885
No 57
>PLN02224 methionine-tRNA ligase
Probab=99.13 E-value=1.5e-09 Score=127.60 Aligned_cols=94 Identities=18% Similarity=0.080 Sum_probs=73.0
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEEeecCC-------------cccchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTN-------------PEAEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G---~~iLRidDTD-------------p~r~~~e~~~~I~edL~wL 312 (773)
++|==+|.|||.+|||||++.++.+.+||. ..| .|+.-+||.+ |..-..+|.+.+.+.+++|
T Consensus 72 ~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 151 (616)
T PLN02224 72 VLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDL 151 (616)
T ss_pred EEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Confidence 667778899999999999999999999984 344 4555555554 1222456778888999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 313 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 313 Gi~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
||.+|..+++++ |....++...+|.++|+.|.
T Consensus 152 ~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~ 185 (616)
T PLN02224 152 DIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYR 185 (616)
T ss_pred CCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999998777666 66666677889999999775
No 58
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.13 E-value=2.6e-09 Score=117.94 Aligned_cols=236 Identities=17% Similarity=0.225 Sum_probs=140.1
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcccc--------------------------
Q 004119 249 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEAE-------------------------- 297 (773)
Q Consensus 249 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~r~-------------------------- 297 (773)
..++.-=+++|||.+||||++..+..+.+||. +...|+.-.||-|+-|.
T Consensus 19 ~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~ 98 (353)
T cd00674 19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC 98 (353)
T ss_pred CeEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence 35666668899999999999999988888873 45678888888875221
Q ss_pred ----hHHHHHHHHHHHHHcCCCCCCcCCCchhHHHHH-HHHH-HHHHcCCcccCCCCHHHHHHhhhccCCCCCC-CCCHH
Q 004119 298 ----KKEYIDHIEEIVQWMGWEPFKITYTSDYFQELY-ELAV-ELIRRGHAYVDHQTPEEIKEYREKKMNSPWR-DRPIA 370 (773)
Q Consensus 298 ----~~e~~~~I~edL~wLGi~pd~~~~qSd~~~~~y-~~a~-~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R-~~s~e 370 (773)
...|...+.+.|+.||+..+-+..+..|-...+ +.+. .|-+.+.. .+-|.+.++...+..|- -.++.
T Consensus 99 ~~~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I------~~i~~~~~~~~~~~~~~P~~p~c 172 (353)
T cd00674 99 CESYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEI------MAILNEYRGRELQETWYPFMPYC 172 (353)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChH------HHHHHHhcCCccCCCceeeeeec
Confidence 456777788889999999874332333333222 3332 34444443 23444444421111110 01111
Q ss_pred HHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCC-----CCCC---cccc-ccccccccccccccC
Q 004119 371 ESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---KWCI-YPSYDYAHCIVDSIE 441 (773)
Q Consensus 371 e~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~-----~~gd---~~~~-~PtY~fa~~VDD~~~ 441 (773)
++ -|... ..++ ..+.. .--|-|++. .+|. +.|. .|++ +|+== +..
T Consensus 173 ~~--------cg~~~--~~v~--~~d~~------~~~v~y~c~-cG~~g~~~~~~g~~KL~Wr~dW~~rW-------~~l 226 (353)
T cd00674 173 EK--------CGKDT--TTVE--AYDAK------AGTVTYKCE-CGHEETVDIRTGRGKLTWRVDWPMRW-------AIL 226 (353)
T ss_pred CC--------cCcce--eEEE--EEeCC------CCeEEEEcC-CCCEEEEeecCCCcccCCCCCchhhh-------hhc
Confidence 10 01110 0011 11110 112555542 2331 1111 2432 33211 235
Q ss_pred CcceeecCcccccc---hHHHHHHHH-HhCCCCCceeeeeeccCCCc-eecccccccccccCccCCCCCcccccHHHHHH
Q 004119 442 NITHSLCTLEFETR---RASYFWLLH-ALGLYQPYVWEYSRLNVSNT-VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 516 (773)
Q Consensus 442 gITHviRg~E~~~~---~~~q~~L~~-aLg~~~P~~w~f~~Ln~~g~-kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrr 516 (773)
||+-=+-|.||..+ -..-..+++ .||...|....|+++.+.|. |||||+|+ ..++..+.+
T Consensus 227 ~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGn---------------vI~~~dll~ 291 (353)
T cd00674 227 GVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGN---------------VITPSDWLE 291 (353)
T ss_pred CCCEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCC---------------cCCHHHHHH
Confidence 67766668888888 555566777 89998887767777777665 99999998 478999988
Q ss_pred cCCCHHHHHHHHHHhC
Q 004119 517 RGVTSTSINAFVQGIG 532 (773)
Q Consensus 517 rG~~PeAI~~fl~~lG 532 (773)
. +.|++|+.|+++..
T Consensus 292 ~-~~~dalR~~~l~~~ 306 (353)
T cd00674 292 V-APPEVLRYLYARRK 306 (353)
T ss_pred H-hChHHHHHHHHhCC
Confidence 7 99999999998876
No 59
>PLN02610 probable methionyl-tRNA synthetase
Probab=98.99 E-value=4.3e-09 Score=127.25 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=69.0
Q ss_pred EEEEeCCCCCCcCchhHHHH-HHHHHHHHHH--cCCEEEEEeecCCc----------------ccchHHHHHHHHHHHHH
Q 004119 251 VLTRFPPEPNGYLHIGHAKA-MFVDFGLAKE--RGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQW 311 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRa-al~n~~~Ar~--~~G~~iLRidDTDp----------------~r~~~e~~~~I~edL~w 311 (773)
++|==.|.|||.+||||+++ .+..+.+||. ..|.=++-+.-||. ..-...|.+.+.+.++|
T Consensus 20 ~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~ 99 (801)
T PLN02610 20 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDW 99 (801)
T ss_pred EEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 56666799999999999996 5668999994 45766666666661 22245667777888999
Q ss_pred cCCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 312 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 312 LGi~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
|||.+|..+++++ |.....+...+|.++|+.|.
T Consensus 100 l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~ 134 (801)
T PLN02610 100 FDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSE 134 (801)
T ss_pred cCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 9999997655553 44455566778999998664
No 60
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=98.97 E-value=2.6e-09 Score=119.86 Aligned_cols=282 Identities=21% Similarity=0.160 Sum_probs=143.4
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------cccchHHHHHHHHHHHHHcC
Q 004119 252 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWMG 313 (773)
Q Consensus 252 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----------------p~r~~~e~~~~I~edL~wLG 313 (773)
+|==.|.|||.|||||+.+.+..+.+||. ..|.=++-+.-|| |+.-..++.+.|.+.++.||
T Consensus 3 ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~ 82 (391)
T PF09334_consen 3 ITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALN 82 (391)
T ss_dssp EEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT
T ss_pred EecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 44456899999999999999999999984 4565566566665 23345678889999999999
Q ss_pred CCCCCcCCCc--hhHHHHHHHHHHHHHcCCccc-------CCCCHHHHHHhhhccCCCC-CC-C-CCH---HHHhHHHH-
Q 004119 314 WEPFKITYTS--DYFQELYELAVELIRRGHAYV-------DHQTPEEIKEYREKKMNSP-WR-D-RPI---AESLKLFE- 377 (773)
Q Consensus 314 i~pd~~~~qS--d~~~~~y~~a~~LI~~G~AY~-------C~cs~eel~~~R~~~~~~~-~R-~-~s~---ee~l~~f~- 377 (773)
|.+|...+++ .|-+...+...+|.++|..|. |-....=+. .+.-.-.|| |. . ... |+.-..++
T Consensus 83 I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~-e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~~ 161 (391)
T PF09334_consen 83 ISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLP-ESFVEGTCPYCGSDKARGDQCENCGRPLEP 161 (391)
T ss_dssp ---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE--GGGETCEETTT--SSCTTTEETTTSSBEEC
T ss_pred CCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccc-cceeeccccCcCccccCCCcccCCCCCccc
Confidence 9999755544 454455567789999999764 321111000 000000011 00 0 000 00000000
Q ss_pred -HhhcCcc-cCC-ceEEE------EEecCC----------C---C------------CCCcCccEEEEEecCCCCCCCCc
Q 004119 378 -DMRNGRI-EEG-KATLR------MKQDMQ----------N---D------------NFNMYDLIAYRIKFTPHPHAGDK 423 (773)
Q Consensus 378 -~m~~G~~-~~g-~~~lR------~K~d~~----------~---~------------~~~~~D~V~~R~~~~~h~~~gd~ 423 (773)
++.+-.. -.| ...+| |+++.- . . +..+.| +.++ ..-.||=+
T Consensus 162 ~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d---~~Is--~~~~WGI~ 236 (391)
T PF09334_consen 162 EELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPD---LSIS--RPLDWGIP 236 (391)
T ss_dssp CCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT-------EE-E--CTTSSSEE
T ss_pred ccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCc---eeee--cCCCCcce
Confidence 0000000 000 01111 111100 0 0 001122 2222 11112221
Q ss_pred -----------c-cccccccccc---------------cc-ccccCCcceeecCccccc-chHHHHHHHHHhCCCCCcee
Q 004119 424 -----------W-CIYPSYDYAH---------------CI-VDSIENITHSLCTLEFET-RRASYFWLLHALGLYQPYVW 474 (773)
Q Consensus 424 -----------~-~~~PtY~fa~---------------~V-DD~~~gITHviRg~E~~~-~~~~q~~L~~aLg~~~P~~w 474 (773)
| +..+.|-.+. -- +|..-.+.|+| |.|-.- ++...-.++.++|++.|...
T Consensus 237 vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi~~fH~i~~pa~l~a~~~~lP~~i 315 (391)
T PF09334_consen 237 VPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFI-GKDIIRFHAIYWPAMLLAAGLPLPRRI 315 (391)
T ss_dssp ETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEE-EGGGHHHHHTHHHHHHHHCTB---SEE
T ss_pred eeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEE-ccchhHHHHHHhHHHHhcccCCCCCEE
Confidence 1 1122222111 01 23344566776 776642 23333445567888888643
Q ss_pred e-eeeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhh
Q 004119 475 E-YSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 553 (773)
Q Consensus 475 ~-f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~ 553 (773)
. ++++.++|.||||+.++ ......+.++ |+++++|.||+..+.-..+..++++.+.+.+...|
T Consensus 316 ~~~~~~~~~g~K~SkS~gn---------------~i~~~~~~~~-~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L 379 (391)
T PF09334_consen 316 VVHGFLTLDGEKMSKSRGN---------------VIWPDDLLEE-YGADALRYYLAREGPEGQDSDFSWEDFIERVNNEL 379 (391)
T ss_dssp EEE--EEETTCCEETTTTE---------------SSBHHHHHHH-H-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCC
T ss_pred EeeeeEEECCeeccccCCc---------------ccCHHHHHHh-CChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 3 57799999999999998 3577888887 99999999999999888888899988888777666
Q ss_pred hcC
Q 004119 554 NKT 556 (773)
Q Consensus 554 ~~~ 556 (773)
...
T Consensus 380 ~~~ 382 (391)
T PF09334_consen 380 ANT 382 (391)
T ss_dssp CCC
T ss_pred HHh
Confidence 543
No 61
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=6.2e-09 Score=120.64 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=73.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------cccchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----------------p~r~~~e~~~~I~edL~wL 312 (773)
++|==-|.|||.+||||+++.+..+.+||. ..|.=++=+.-|| |+.-..++.+.+.++.+||
T Consensus 8 ~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l 87 (558)
T COG0143 8 LVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKAL 87 (558)
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 566667999999999999999999999994 5676666666666 2233567788899999999
Q ss_pred CCCCCCcCC--CchhHHHHHHHHHHHHHcCCccc
Q 004119 313 GWEPFKITY--TSDYFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 313 Gi~pd~~~~--qSd~~~~~y~~a~~LI~~G~AY~ 344 (773)
||..|...+ ++.|.+.-.+...+|.++|..|.
T Consensus 88 ~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~ 121 (558)
T COG0143 88 NISFDNFIRTTSPEHKELVQEFFLKLYENGDIYL 121 (558)
T ss_pred CCcccccccCCCHHHHHHHHHHHHHHHHCCCEec
Confidence 999987443 44465566677889999999774
No 62
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.96 E-value=1.1e-08 Score=114.63 Aligned_cols=93 Identities=26% Similarity=0.295 Sum_probs=66.2
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc---------c-----------------------c
Q 004119 252 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A-----------------------E 297 (773)
Q Consensus 252 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~---------r-----------------------~ 297 (773)
+|==+|.|||.|||||+++.++.+.+||. ..|.-++.+..+|.- + -
T Consensus 5 i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
T cd00817 5 IDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEW 84 (382)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHH
Confidence 33447999999999999999999999984 356555544444421 0 1
Q ss_pred hHHHHHHHHHHHHHcCCCC--CCcCCC--chhHHHHHHHHHHHHHcCCccc
Q 004119 298 KKEYIDHIEEIVQWMGWEP--FKITYT--SDYFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 298 ~~e~~~~I~edL~wLGi~p--d~~~~q--Sd~~~~~y~~a~~LI~~G~AY~ 344 (773)
..++.+.+.++++.||+.. +..+++ .+|.+.......+|.++|++|.
T Consensus 85 ~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 85 KEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 2457888899999999864 454433 3455555566789999999886
No 63
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.87 E-value=2.6e-08 Score=116.63 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=56.9
Q ss_pred CccEEEEEecCCCCCCCCcccccccc---cccccccccc-CCccee--ecCcccccchHHHHHHHHHhCCCCCcee---e
Q 004119 405 YDLIAYRIKFTPHPHAGDKWCIYPSY---DYAHCIVDSI-ENITHS--LCTLEFETRRASYFWLLHALGLYQPYVW---E 475 (773)
Q Consensus 405 ~D~V~~R~~~~~h~~~gd~~~~~PtY---~fa~~VDD~~-~gITHv--iRg~E~~~~~~~q~~L~~aLg~~~P~~w---~ 475 (773)
.|.|+-|. +| .+|| |+|...+=.. .+.+++ +-|.||..+-.+-..+.++||+..+... .
T Consensus 294 ~~~vl~ks-------DG-----t~~Y~t~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~ 361 (562)
T PRK12451 294 PPCLIRKS-------DG-----ATIYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVP 361 (562)
T ss_pred CceEEEeC-------CC-----ccccchhHHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEe
Confidence 47888887 55 3444 3443222111 133432 2378888888888888899998644322 2
Q ss_pred eeeccCCCceecccccccccccCccCCCCCcccccHHHHHHc
Q 004119 476 YSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 517 (773)
Q Consensus 476 f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrr 517 (773)
|+.++.+|.+||+|+|+ ..||.+|.+.
T Consensus 362 ~g~V~~~g~kmStR~G~---------------~v~l~dLlde 388 (562)
T PRK12451 362 FGLILKDGKKMSTRKGR---------------VVLLEEVLEE 388 (562)
T ss_pred eeeEecCCCCCcCCCCC---------------eeEHHHHHHH
Confidence 56778889999999997 4789998875
No 64
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=98.77 E-value=6.9e-08 Score=113.30 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=49.6
Q ss_pred CccEEEEEecCCCCCCCCcccccccccccc---ccccccCCccee--ecCcccccchHHHHHHHHHhCCCCCc-eeeeee
Q 004119 405 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAH---CIVDSIENITHS--LCTLEFETRRASYFWLLHALGLYQPY-VWEYSR 478 (773)
Q Consensus 405 ~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~---~VDD~~~gITHv--iRg~E~~~~~~~q~~L~~aLg~~~P~-~w~f~~ 478 (773)
.|.|+-|. +| .+||.-+. ...=...+.+++ +-|.+|..+-.+-..++.+||++.|. .-++++
T Consensus 298 ~~~vl~ks-------DG-----t~~Y~t~DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~ 365 (566)
T TIGR00456 298 KDRVLQKS-------DG-----TYLYLTRDIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNF 365 (566)
T ss_pred CCeEEEEC-------CC-----CceechhhHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEE
Confidence 47888887 55 45554433 221111144443 34888988888888888999987774 444555
Q ss_pred ccCCCceecccccc
Q 004119 479 LNVSNTVMSKRKLN 492 (773)
Q Consensus 479 Ln~~g~kLSKRk~~ 492 (773)
-.+.+.+||||+|+
T Consensus 366 ~~V~~~kmSkr~Gn 379 (566)
T TIGR00456 366 GMVPLGSMKTRRGN 379 (566)
T ss_pred EEEECCCCCccCCc
Confidence 45567899999997
No 65
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.74 E-value=4e-07 Score=105.33 Aligned_cols=247 Identities=17% Similarity=0.217 Sum_probs=137.8
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcccc--------------------------
Q 004119 249 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEAE-------------------------- 297 (773)
Q Consensus 249 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~r~-------------------------- 297 (773)
+.++.-=+=+|||.+||||++..+..+.+||. +...||.=-||-|+-|.
T Consensus 18 ~~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~ 97 (515)
T TIGR00467 18 NLYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGC 97 (515)
T ss_pred CeEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCC
Confidence 35666667779999999999999988888874 45578888888875432
Q ss_pred ----hHHHHHHHHHHHHHcCCCCCCcCCCch-----hHHHHHHHHHHHHHcCCcccCCCCHHHH----HHhhhccCCCCC
Q 004119 298 ----KKEYIDHIEEIVQWMGWEPFKITYTSD-----YFQELYELAVELIRRGHAYVDHQTPEEI----KEYREKKMNSPW 364 (773)
Q Consensus 298 ----~~e~~~~I~edL~wLGi~pd~~~~qSd-----~~~~~y~~a~~LI~~G~AY~C~cs~eel----~~~R~~~~~~~~ 364 (773)
.+.|...+.+.|+-||++. +..++|+ .|+... ...+++ +++| ...++...+..|
T Consensus 98 ~~s~~~h~~~~~~~~l~~~gi~~-e~~s~te~Y~sG~~~~~i---~~~L~~---------~~~I~~il~~~~~~~~~~~~ 164 (515)
T TIGR00467 98 KTSYAEHFLIPFLESLPVLGINP-EFIRASKQYTSGLYASQI---KIALDH---------RKEISEILNEYRTSKLEENW 164 (515)
T ss_pred cHHHHHHHHHHHHHHHHHcCCeE-EEEEHHHhhhcCChHHHH---HHHHHh---------HHHHHHHHHHhcCCccCCCc
Confidence 2345566677788888864 3333333 322222 222221 1222 222321111100
Q ss_pred C-CCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCC-----CCCC---cccc-cccccccc
Q 004119 365 R-DRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---KWCI-YPSYDYAH 434 (773)
Q Consensus 365 R-~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~-----~~gd---~~~~-~PtY~fa~ 434 (773)
- -.++.+ +-|+... .++ ..+ ..+.|-|++. .+|. ..|. .|++ ||+==.
T Consensus 165 ~P~~pic~--------~cGrv~~--~~~--~~~-------~~~~v~Y~c~-cG~~g~~~~~~g~~KL~WkvdW~~RW~-- 222 (515)
T TIGR00467 165 YPISVFCE--------NCGRDTT--TVN--NYD-------NEYSIEYSCE-CGNQESVDIYTGAIKLPWRVDWPARWK-- 222 (515)
T ss_pred eeeeeecC--------CcCccCc--eEE--Eec-------CCceEEEEcC-CCCEEEEeecCCCcccCCCCCcHhhHh--
Confidence 0 011111 0122110 011 111 0113666653 2332 1111 3433 332111
Q ss_pred ccccccCCcceeecCcccccchHHH---HHHH-HHhCCCCCc--eeeeeeccCCCceecccccccccccCccCCCCCccc
Q 004119 435 CIVDSIENITHSLCTLEFETRRASY---FWLL-HALGLYQPY--VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCL 508 (773)
Q Consensus 435 ~VDD~~~gITHviRg~E~~~~~~~q---~~L~-~aLg~~~P~--~w~f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~ 508 (773)
..|||-=--|.||+.+.++| ..++ ++||.+.|. .+++-||..+|.|||||+|+ .
T Consensus 223 -----~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn---------------~ 282 (515)
T TIGR00467 223 -----IEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWISLKGKGGKMSSSKGD---------------V 282 (515)
T ss_pred -----hhCcccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEEEcCCCccccCCCCC---------------C
Confidence 23555555688888766333 3355 489887775 44445677788999999998 5
Q ss_pred ccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhh
Q 004119 509 MTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 553 (773)
Q Consensus 509 ~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~ 553 (773)
.|++.+.+. +.|++++.|+++-.....- .++++.| ++...|.
T Consensus 283 itl~dll~~-~~pdalR~~~l~~~~~~~l-dFd~~~l-~~~dey~ 324 (515)
T TIGR00467 283 ISVKDVLEV-YTPEITRFLFARTKPEFHI-SFDLDVI-KLYEDYD 324 (515)
T ss_pred ccHHHHHHH-cCHHHHHHHHhccCCCCCC-cCCHHHH-HHHHHHH
Confidence 799999988 9999999987776665543 3666666 5555443
No 66
>PLN02286 arginine-tRNA ligase
Probab=98.64 E-value=4.4e-07 Score=106.71 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=36.7
Q ss_pred CeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC
Q 004119 249 GNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN 293 (773)
Q Consensus 249 g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD 293 (773)
.+|++=| +|+|||+|||||+|++++-..+|| .+-|.-|.|.--+|
T Consensus 117 ~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyin 164 (576)
T PLN02286 117 KRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVG 164 (576)
T ss_pred ceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeec
Confidence 4788888 999999999999999999999998 44566666654444
No 67
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=98.59 E-value=3.4e-07 Score=98.56 Aligned_cols=171 Identities=20% Similarity=0.169 Sum_probs=116.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-------CcccchHHHHHHHHHHHHHcCCCCCC--cCCCchhHHH
Q 004119 258 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQE 328 (773)
Q Consensus 258 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-------Dp~r~~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~~ 328 (773)
.|||.|||||.-.|+.++...+..|..+++.|.|. +..++..++...+..++.++|++|++ +..||++. .
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~-~ 85 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVP-E 85 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcH-H
Confidence 58999999999999999999998899999999998 34567778888899999999999965 57799986 3
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccE
Q 004119 329 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 408 (773)
Q Consensus 329 ~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V 408 (773)
+++.+- .+.|.|+..+++.. ..+ ++ +..+ . .+.+
T Consensus 86 ~~~l~~-------~l~~~~~~~~l~r~--~~f----k~------------~~~~-------------~---~~~~----- 119 (280)
T cd00806 86 HYELAW-------LLSCVVTFGELERM--TGF----KD------------KSAQ-------------G---ESVN----- 119 (280)
T ss_pred HHHHHH-------HHhCcCCHHHHHhc--cch----hh------------hhcc-------------C---CCCc-----
Confidence 554432 26788988887532 111 10 0000 0 0000
Q ss_pred EEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhC------CCCCceeee--eec-
Q 004119 409 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEY--SRL- 479 (773)
Q Consensus 409 ~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg------~~~P~~w~f--~~L- 479 (773)
++. -.||.-.=|.. .+.+.++|..|.|-..+-..-.-+.+.++ +..|..... +++
T Consensus 120 ~g~-------------~~YP~lqaaDi---l~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~ 183 (280)
T cd00806 120 IGL-------------LTYPVLQAADI---LLYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLP 183 (280)
T ss_pred chh-------------hcchHHHHhhh---hhccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccc
Confidence 000 01343333332 24456888999999888887777888888 667755444 443
Q ss_pred cCCC--ceeccccc
Q 004119 480 NVSN--TVMSKRKL 491 (773)
Q Consensus 480 n~~g--~kLSKRk~ 491 (773)
.++| .|||||.+
T Consensus 184 ~l~g~~~KMSKS~~ 197 (280)
T cd00806 184 GLQGPSKKMSKSDP 197 (280)
T ss_pred cCCCCCCcccCCCC
Confidence 5665 59999987
No 68
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.7e-06 Score=99.69 Aligned_cols=240 Identities=18% Similarity=0.174 Sum_probs=120.8
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc-ccchHHHHHHHHHHHHHcCCCCC-CcCCC
Q 004119 248 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-EAEKKEYIDHIEEIVQWMGWEPF-KITYT 322 (773)
Q Consensus 248 ~g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp-~r~~~e~~~~I~edL~wLGi~pd-~~~~q 322 (773)
+.+|+.=| +|+|||+|||||+|++++...+|| ..-|.=+.|.--+|. .++..-..-++ ...|-+.. .....
T Consensus 116 ~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~----~~~~~e~~~~~~~~ 191 (577)
T COG0018 116 GKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSY----EKRGREALGLTPEP 191 (577)
T ss_pred CCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHH----HHhccccccCCCCc
Confidence 45888888 999999999999999999999999 334444444444442 22222222222 11222111 01111
Q ss_pred chhHHHHH-HHHHHHHHcCCc-----------cc---CCC------CHHHHHHhhh---------ccC---CCCCCCCCH
Q 004119 323 SDYFQELY-ELAVELIRRGHA-----------YV---DHQ------TPEEIKEYRE---------KKM---NSPWRDRPI 369 (773)
Q Consensus 323 Sd~~~~~y-~~a~~LI~~G~A-----------Y~---C~c------s~eel~~~R~---------~~~---~~~~R~~s~ 369 (773)
-.++..+| +.+++|.+.... |. -.| ....+...+. ..+ ...+.+-..
T Consensus 192 ~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~ 271 (577)
T COG0018 192 DGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKV 271 (577)
T ss_pred chHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccH
Confidence 22334434 444444443321 10 000 0001111111 111 122233345
Q ss_pred HHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcce--ee
Q 004119 370 AESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITH--SL 447 (773)
Q Consensus 370 ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITH--vi 447 (773)
++.+..+++.-......|..++.+--.. ......|.|+-|. +|+. .|-|=|+|+..+=+-.|-+. -+
T Consensus 272 ~~vv~~L~~~~~~~e~~GA~~vdl~~~~--~~gd~~~~vl~KS-------DGt~--lY~t~DIAy~~~K~~~~~d~~IyV 340 (577)
T COG0018 272 EKVVEDLEEKGLLYEDDGALVVDLLKFK--KFGDDKDRVLQKS-------DGTY--LYFTRDIAYHLYKFERGFDKLIYV 340 (577)
T ss_pred HHHHHHHHhcCCEeeeCCeEEEehhhhh--hcCCCCCeEEEEc-------CCCe--eeehhHHHHHHHHHhcCCCEEEEE
Confidence 5555444433222223454444331100 1223357888887 5531 13444555544322233332 23
Q ss_pred cCcccccchHHHHHHHHHhCCCCCc-eee---eeec-cCCCceecccccccccccCccCCCCCcccccHHHHHHc
Q 004119 448 CTLEFETRRASYFWLLHALGLYQPY-VWE---YSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 517 (773)
Q Consensus 448 Rg~E~~~~~~~q~~L~~aLg~~~P~-~w~---f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrr 517 (773)
-|.||..+-.+-..++..+|+..+. +.. |+.+ +-+|.|||||.|. ..||+.+.+.
T Consensus 341 ~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~---------------~vtl~dllde 400 (577)
T COG0018 341 LGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN---------------VVTLDDLLDE 400 (577)
T ss_pred eCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc---------------eEEHHHHHHH
Confidence 4888888887777777888886663 222 2333 3478999999997 4788887764
No 69
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=98.55 E-value=7.8e-07 Score=108.49 Aligned_cols=93 Identities=20% Similarity=0.199 Sum_probs=66.9
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC-----------------cc------------cchHH
Q 004119 252 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-----------------PE------------AEKKE 300 (773)
Q Consensus 252 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD-----------------p~------------r~~~e 300 (773)
++==+|.|||.|||||+++.++.+.+||. ..|.-++.+-.+| +. .-..+
T Consensus 42 i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~ 121 (800)
T PRK13208 42 IDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDE 121 (800)
T ss_pred EecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHH
Confidence 33338999999999999999999999994 4677777655554 21 12346
Q ss_pred HHHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 301 YIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 301 ~~~~I~edL~wLGi~--pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
+.+.|.++++.||+. |+..+++++ |.........+|.++|++|.
T Consensus 122 ~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 169 (800)
T PRK13208 122 DEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYR 169 (800)
T ss_pred HHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeee
Confidence 889999999999985 545554443 33333345568999999776
No 70
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=98.50 E-value=7.7e-06 Score=100.66 Aligned_cols=93 Identities=27% Similarity=0.304 Sum_probs=69.0
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc------------------c--------------c
Q 004119 252 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE------------------A--------------E 297 (773)
Q Consensus 252 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~------------------r--------------~ 297 (773)
++==||.+||.||||||++.++-+.+||. ..|.-++.+-.+|-. + -
T Consensus 37 i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~ 116 (861)
T TIGR00422 37 IDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEW 116 (861)
T ss_pred EEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHH
Confidence 33348999999999999999999999994 578888888777721 0 0
Q ss_pred hHHHHHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 298 KKEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 298 ~~e~~~~I~edL~wLGi~--pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
..+|...|.+.++.||+. |+..+++.| |.........+|-++|+.|.
T Consensus 117 ~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 117 KEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeee
Confidence 356788999999999965 555555544 33333345568999999886
No 71
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.37 E-value=3.3e-06 Score=93.88 Aligned_cols=48 Identities=31% Similarity=0.557 Sum_probs=39.1
Q ss_pred cCCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc
Q 004119 247 TGGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP 294 (773)
Q Consensus 247 ~~g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp 294 (773)
.+.+|++=| +|+|||+|||||+|++++-..+|| .+.|.-+.|.--+|.
T Consensus 18 ~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD 68 (354)
T PF00750_consen 18 KGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGD 68 (354)
T ss_dssp TSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBT
T ss_pred CCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECC
Confidence 355789999 899999999999999999999999 578988888877763
No 72
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=1.1e-05 Score=89.24 Aligned_cols=275 Identities=19% Similarity=0.195 Sum_probs=147.3
Q ss_pred CCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc------------cchHHHHHHHHHH----HHHcCCCCCCc
Q 004119 258 EPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE------------AEKKEYIDHIEEI----VQWMGWEPFKI 319 (773)
Q Consensus 258 sPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~------------r~~~e~~~~I~ed----L~wLGi~pd~~ 319 (773)
-||-..||||++++++.+.+||. ..|.-+.=.+.||-- +.-+++.+.|-.. -.-+||..+..
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~F 128 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTKF 128 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhhe
Confidence 47788999999999999999994 578878888888821 2234454444433 34468888876
Q ss_pred CCCch--hHHHHHHHHHHHHHcCCccc-------C-----CCCHHHHHHhhhc---------cCCCCCCCCCHHHH----
Q 004119 320 TYTSD--YFQELYELAVELIRRGHAYV-------D-----HQTPEEIKEYREK---------KMNSPWRDRPIAES---- 372 (773)
Q Consensus 320 ~~qSd--~~~~~y~~a~~LI~~G~AY~-------C-----~cs~eel~~~R~~---------~~~~~~R~~s~ee~---- 372 (773)
.+++| |.....++-..+.++|..|. | |-...++.+.-.+ +.+..||. |+|
T Consensus 129 IRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~k---E~NY~Fr 205 (578)
T KOG0436|consen 129 IRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRK---EDNYFFR 205 (578)
T ss_pred eecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEec---ccceeee
Confidence 66665 55566677778888998775 2 2222222222110 01111111 111
Q ss_pred hHHHHHhhcCcccCCceEEEEEec-------CCCCCCCcCccEEEEEecCCC---CCCCCc------c----------cc
Q 004119 373 LKLFEDMRNGRIEEGKATLRMKQD-------MQNDNFNMYDLIAYRIKFTPH---PHAGDK------W----------CI 426 (773)
Q Consensus 373 l~~f~~m~~G~~~~g~~~lR~K~d-------~~~~~~~~~D~V~~R~~~~~h---~~~gd~------~----------~~ 426 (773)
|..|.+-...-+...+ ||-.+ .+.-...+.|+-+-|-+-.-| |..||+ | .|
T Consensus 206 LSkfqk~l~d~lrkNP---~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nYiSvig 282 (578)
T KOG0436|consen 206 LSKFQKPLEDHLRKNP---RFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIG 282 (578)
T ss_pred HHhhhhHHHHHHhcCC---CccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhHHHhhc
Confidence 1111110000000000 01000 000012245665555321111 222222 2 12
Q ss_pred ccc--cccccccccccCCcceeecCcccccchHHH-HHHHHHhCCCCCce-eeeeeccCCCceecccccccccccCccCC
Q 004119 427 YPS--YDYAHCIVDSIENITHSLCTLEFETRRASY-FWLLHALGLYQPYV-WEYSRLNVSNTVMSKRKLNFLVTNKYVDG 502 (773)
Q Consensus 427 ~Pt--Y~fa~~VDD~~~gITHviRg~E~~~~~~~q-~~L~~aLg~~~P~~-w~f~~Ln~~g~kLSKRk~~~lv~~~~v~g 502 (773)
||- -+.-..+.---=.-.||| |+|.+---..| -.++-+-|++.|.. .-|+|...+|.||||+.||.+
T Consensus 283 ~~~~~~N~k~~ls~~wPat~HvI-GKDIlrFHavYWPafLmaAGlplP~~I~vHghwt~ngmKMsKSLGNvv-------- 353 (578)
T KOG0436|consen 283 YPNKQQNLKTALSFGWPATLHVI-GKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWTKNGMKMSKSLGNVV-------- 353 (578)
T ss_pred CCchhccccceeecCCCceeeeh-hhhhhhhhhhhhHHHHHhcCCCCccEEEEeeeeeecceecchhhcccc--------
Confidence 331 000111100000123766 66655332222 12334568888864 347899999999999999842
Q ss_pred CCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhc
Q 004119 503 WDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNK 555 (773)
Q Consensus 503 WdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~ 555 (773)
|| ..|.++ |.+.++|.|++.-|.-..+..++.++|.......+.+
T Consensus 354 --dP-----~~l~~k-ygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~ 398 (578)
T KOG0436|consen 354 --DP-----FELVQK-YGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLAN 398 (578)
T ss_pred --CH-----HHHHHH-hCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHH
Confidence 44 345655 9999999999998887778788888877666554443
No 73
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.21 E-value=8.6e-06 Score=90.00 Aligned_cols=244 Identities=19% Similarity=0.228 Sum_probs=110.1
Q ss_pred HHHHHHhhhh--cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcccc------------
Q 004119 237 KEVLDKHLEV--TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEAE------------ 297 (773)
Q Consensus 237 ~~~~~~h~~~--~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~r~------------ 297 (773)
.++++++.+. .++.++.-=.=+|+|..||||+|-++..+..++. ...++|+--||.|+=|.
T Consensus 9 ~~i~~~r~~~~~~~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ 88 (360)
T PF01921_consen 9 DEIIKERGKRKGGKEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEK 88 (360)
T ss_dssp HHHHHHC-------SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCC
T ss_pred HHHHHHhhccccCCccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHH
Confidence 3445444333 3467777778899999999999999999988873 34579999999995431
Q ss_pred -------------------hHHHHHHHHHHHHHcCCCCCC----cCCCchhHHHHHHHHHHHHHc-CCcccCCCCHHHHH
Q 004119 298 -------------------KKEYIDHIEEIVQWMGWEPFK----ITYTSDYFQELYELAVELIRR-GHAYVDHQTPEEIK 353 (773)
Q Consensus 298 -------------------~~e~~~~I~edL~wLGi~pd~----~~~qSd~~~~~y~~a~~LI~~-G~AY~C~cs~eel~ 353 (773)
.+.|...+.+.|+.||+++.- ..|+|-.|+.....| +++ ... .+-|.
T Consensus 89 ylg~Plt~VPdP~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~a---L~~~~~I------~~Il~ 159 (360)
T PF01921_consen 89 YLGKPLTRVPDPFGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTA---LENRDEI------REILN 159 (360)
T ss_dssp CTTSBTTTSB-TTSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHH---HHTHHHH------HHHHH
T ss_pred hcCCccccCCCCCCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHH---HHhHHHH------HHHHH
Confidence 346777788889999997632 234444433332221 111 000 11222
Q ss_pred HhhhccCCCCCCC-CCHHHHhHHHHHhhcCcccCCceEEEE-EecCCCCCCCcCccEEEEEecCCCC-----CCCC---c
Q 004119 354 EYREKKMNSPWRD-RPIAESLKLFEDMRNGRIEEGKATLRM-KQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---K 423 (773)
Q Consensus 354 ~~R~~~~~~~~R~-~s~ee~l~~f~~m~~G~~~~g~~~lR~-K~d~~~~~~~~~D~V~~R~~~~~h~-----~~gd---~ 423 (773)
+.|+...+..|-- .++.++ -|+. .+..+ ..+. -..-|-|++...+|. +.|. .
T Consensus 160 ~~~~~~~~~~y~Pf~piC~~--------cGri----~tt~v~~~d~------~~~~v~Y~c~~cG~~g~~~i~~g~gKL~ 221 (360)
T PF01921_consen 160 EYRGRERPETYSPFLPICEK--------CGRI----DTTEVTEYDP------EGGTVTYRCEECGHEGEVDITGGNGKLQ 221 (360)
T ss_dssp HHHHHT--TT--SEEEEETT--------TEE------EEEEEEE--------SSSEEEEE--TTS---EEETTTT-EEE-
T ss_pred HhcCcCCCCCeeeeeeeccc--------cCCc----ccceeeEeec------CCCEEEEEecCCCCEEEEecCCCccccc
Confidence 3332211111100 011100 0111 01111 1111 134677877555553 1221 2
Q ss_pred ccc-ccccccccccccccCCcceeecCccccc---chHHHHHHH-HHhCCCCCceeeeeeccCCCc-eeccccccccccc
Q 004119 424 WCI-YPSYDYAHCIVDSIENITHSLCTLEFET---RRASYFWLL-HALGLYQPYVWEYSRLNVSNT-VMSKRKLNFLVTN 497 (773)
Q Consensus 424 ~~~-~PtY~fa~~VDD~~~gITHviRg~E~~~---~~~~q~~L~-~aLg~~~P~~w~f~~Ln~~g~-kLSKRk~~~lv~~ 497 (773)
|++ ||+== +..||+-=--|+||.+ |......|+ +.||...|....|....++|. |||||+|+
T Consensus 222 WkvDW~mRW-------~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~----- 289 (360)
T PF01921_consen 222 WKVDWPMRW-------AALGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGN----- 289 (360)
T ss_dssp HHHHHHHHH-------HHTT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES----------------
T ss_pred CCCcChhhh-------hhcCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCC-----
Confidence 433 22211 1245565556888888 777778899 789999998888877666554 99999998
Q ss_pred CccCCCCCcccccHHHHHHcCCCHHHHHHHHHH
Q 004119 498 KYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQG 530 (773)
Q Consensus 498 ~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~ 530 (773)
.+|++...+- ++||.|+.|+..
T Consensus 290 ----------~~t~~e~L~~-~~PE~lr~l~~~ 311 (360)
T PF01921_consen 290 ----------GITPEEWLEY-APPESLRYLMAR 311 (360)
T ss_dssp -------------HHHHHTT-S-HHHHHHHHHC
T ss_pred ----------ccCHHHHHHh-cCHHHHHHHHcc
Confidence 4799999876 788888887765
No 74
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.83 E-value=0.00025 Score=79.39 Aligned_cols=189 Identities=21% Similarity=0.251 Sum_probs=111.1
Q ss_pred cCcHHHHHHhhhh-cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCc-------ccchHHHHHHH
Q 004119 234 CNTKEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP-------EAEKKEYIDHI 305 (773)
Q Consensus 234 ~~~~~~~~~h~~~-~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp-------~r~~~e~~~~I 305 (773)
....+.+.++++. .+-.+.|=|.| ||.|||||.-+ +.++..-...|..+++-|-|... ..+..++...+
T Consensus 51 hrd~d~il~~~~~~~~~~iytG~~P--SG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~ 127 (368)
T PRK12285 51 HRDYDKILEAYRNGKPFAVYTGFMP--SGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEY 127 (368)
T ss_pred cCCHHHHHHHHhcCCCeEEEEccCC--CCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHH
Confidence 3334555555543 23345555554 58999999864 55565555567777777777631 12334455557
Q ss_pred HHHHHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCc
Q 004119 306 EEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGR 383 (773)
Q Consensus 306 ~edL~wLGi~pd~--~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~ 383 (773)
..++-++|++|++ ++.||++.+ +++.+-.| .|.+|-.+++.. .++.. +.
T Consensus 128 ~~~~lA~G~Dp~k~~i~~qS~~~~-~~~l~~~l-------~~~~t~~~l~r~--~~f~~---~~---------------- 178 (368)
T PRK12285 128 ILDLIALGFDPDKTEIYFQSENIK-VYDLAFEL-------AKKVNFSELKAI--YGFTG---ET---------------- 178 (368)
T ss_pred HHHHHHhCCCccceEEEECCchHH-HHHHHHHH-------HhhCcHHHHHHh--hCCCC---CC----------------
Confidence 7788899999985 788999875 77776655 455565555432 11000 00
Q ss_pred ccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccc---cccCCcceeecCcccccchHHHH
Q 004119 384 IEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIV---DSIENITHSLCTLEFETRRASYF 460 (773)
Q Consensus 384 ~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VD---D~~~gITHviRg~E~~~~~~~q~ 460 (773)
+ ++. ..||.-+=|.++- |.-..-++|..|.|-..+-..-.
T Consensus 179 -----------------~-------~g~-------------~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~ltR 221 (368)
T PRK12285 179 -----------------N-------IGH-------------IFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTR 221 (368)
T ss_pred -----------------c-------hhh-------------hhhhHHHHHHHHhhcccccCCceEEEeccchHHHHHHHH
Confidence 0 000 1144444333331 11134568888887765555545
Q ss_pred HHHHHh----CCCCCceeeeeec-cCCCceeccccc
Q 004119 461 WLLHAL----GLYQPYVWEYSRL-NVSNTVMSKRKL 491 (773)
Q Consensus 461 ~L~~aL----g~~~P~~w~f~~L-n~~g~kLSKRk~ 491 (773)
-+...+ |+..|...+...+ .++|+|||||..
T Consensus 222 diA~r~n~~~gf~~P~~l~~~~lpgL~G~KMSkS~~ 257 (368)
T PRK12285 222 DIAERLHGGYGFIKPSSTYHKFMPGLTGGKMSSSKP 257 (368)
T ss_pred HHHHHHhhhcCCCCchhHhhhcccCCCCCcCCCCCC
Confidence 556666 8888865444444 788999999984
No 75
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.83 E-value=0.0002 Score=79.03 Aligned_cols=170 Identities=22% Similarity=0.252 Sum_probs=105.3
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC----cc----cchHHHHHHHHHHHHHcCCCCCC--cCCCchhHH
Q 004119 258 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN----PE----AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 327 (773)
Q Consensus 258 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTD----p~----r~~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~ 327 (773)
.|||.+||||.-.++.+|..- +.|..+++=|-|.- +. .........+..++-.+|++|++ +..||++.
T Consensus 10 ~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~- 87 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYP- 87 (328)
T ss_pred CCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcH-
Confidence 688999999999999998777 56666666666642 11 12344555666777789999985 67899986
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCcc
Q 004119 328 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 407 (773)
Q Consensus 328 ~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~ 407 (773)
.+++.+-.| -|++|-.++... ..+ .+++. ..+.+
T Consensus 88 e~~el~~~l-------~~~~t~~~l~r~--~~~----k~k~~-----------------------------~~~~~---- 121 (328)
T TIGR00233 88 EHYELAWLL-------SCQVTFGELKRM--TQF----KDKSQ-----------------------------AENVP---- 121 (328)
T ss_pred HHHHHHHHH-------HccCCHHHHHhc--cCc----chhcc-----------------------------CCCCC----
Confidence 355554333 467776666432 111 11000 00000
Q ss_pred EEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhC------CCCCceeee---ee
Q 004119 408 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEY---SR 478 (773)
Q Consensus 408 V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg------~~~P~~w~f---~~ 478 (773)
++ ...||...-|.++ +.+.++|..|.|-..+-..-.-+.+.++ +..|...+. ++
T Consensus 122 -~g-------------~l~YP~lqaaDil---~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~ 184 (328)
T TIGR00233 122 -IG-------------LFSYPVLQAADIL---LYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPR 184 (328)
T ss_pred -ch-------------hhcchHHHHhhhh---hcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCC
Confidence 00 1136666655554 5678899999888766666666667777 555643332 22
Q ss_pred c-cCCCceecccccc
Q 004119 479 L-NVSNTVMSKRKLN 492 (773)
Q Consensus 479 L-n~~g~kLSKRk~~ 492 (773)
| .++|+|||||..+
T Consensus 185 l~gl~~~KMSKS~~~ 199 (328)
T TIGR00233 185 LMGLSGKKMSKSDPN 199 (328)
T ss_pred CCCCCCCcCCCCCCC
Confidence 2 5567899999874
No 76
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.76 E-value=4.6e-05 Score=93.20 Aligned_cols=94 Identities=20% Similarity=0.286 Sum_probs=70.3
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCc----------------ccchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp----------------~r~~~e~~~~I~edL~wL 312 (773)
+++==+|.|||.|||||+++.++.+.+||. ..|.-++.+-.+|. ..-..++.+.|.+.++.|
T Consensus 35 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~l 114 (805)
T PRK00390 35 YVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSL 114 (805)
T ss_pred EEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 455547999999999999999999999984 46766666655552 123567899999999999
Q ss_pred CCC--CCCcCC--CchhHHHHHHHHHHHHHcCCccc
Q 004119 313 GWE--PFKITY--TSDYFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 313 Gi~--pd~~~~--qSd~~~~~y~~a~~LI~~G~AY~ 344 (773)
|+. |+..+. ..+|.........+|.++|++|.
T Consensus 115 Gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 150 (805)
T PRK00390 115 GFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYR 150 (805)
T ss_pred CCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 995 444443 33455555666779999999886
No 77
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=97.74 E-value=5.9e-05 Score=92.61 Aligned_cols=94 Identities=26% Similarity=0.339 Sum_probs=69.0
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCc----------------ccchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp----------------~r~~~e~~~~I~edL~wL 312 (773)
+++=-+|.|||.|||||+++.++.+.+||. ..|.-++..-.+|. ..-..++++.+.+.++.|
T Consensus 32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 555568999999999999999999999994 46776666666662 122557889999999999
Q ss_pred CCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 313 GWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 313 Gi~--pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
|+. |+..+.+++ |.........+|.++|++|.
T Consensus 112 G~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~ 147 (842)
T TIGR00396 112 GFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYV 147 (842)
T ss_pred CCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEe
Confidence 975 555544443 33333334468999999886
No 78
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.0004 Score=79.37 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=63.4
Q ss_pred CCcceeecCcccccchHHHHHHHHH----hCCCCCceeeeeeccCC-CceecccccccccccCccCCCCCcccccHHHHH
Q 004119 441 ENITHSLCTLEFETRRASYFWLLHA----LGLYQPYVWEYSRLNVS-NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLR 515 (773)
Q Consensus 441 ~gITHviRg~E~~~~~~~q~~L~~a----Lg~~~P~~w~f~~Ln~~-g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lr 515 (773)
.|||-=-=|+||.++..+|.-.+.. +|+..|....|-...++ +.+||+++|+ ..|+++..
T Consensus 228 lgVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~---------------~i~~~dwl 292 (521)
T COG1384 228 LGVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGN---------------VISLSDWL 292 (521)
T ss_pred cCcccccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCCc---------------EEcHHHHH
Confidence 3455545699999999999887764 46777665555554444 5999999998 47999988
Q ss_pred HcCCCHHHHHHHHHHhCCCCCCccccHhH-HHHHHHHhh
Q 004119 516 RRGVTSTSINAFVQGIGISRSDSLIRLDR-LEYHIREEL 553 (773)
Q Consensus 516 rrG~~PeAI~~fl~~lG~s~~~~~~~~~~-Le~~~r~~~ 553 (773)
+- ++|+.++.|+..---++.- .++++. |-.++.+|.
T Consensus 293 ev-~~pE~lry~~~r~kP~r~~-~~d~~~~il~lvDEyd 329 (521)
T COG1384 293 EV-APPEVLRYLIARTKPNRHI-DFDFDLGILKLVDEYD 329 (521)
T ss_pred Hh-cCHhHeeeeeeecCCCcce-ecCCCCChhHHHHHHH
Confidence 85 7788777766553233322 244444 444444443
No 79
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00039 Score=75.87 Aligned_cols=183 Identities=20% Similarity=0.194 Sum_probs=114.4
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC-------c-ccchHHHHHHHHHHHHHcCCCCCC--cCCCchhHH
Q 004119 258 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN-------P-EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 327 (773)
Q Consensus 258 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTD-------p-~r~~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~ 327 (773)
-|||.|||||.-.++.+|+......+.|+.=|-|.. + +.....++..+..++=.+||+|++ ++.||+.-+
T Consensus 13 ~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e 92 (314)
T COG0180 13 QPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPE 92 (314)
T ss_pred CCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCchH
Confidence 589999999999999999988877677777777753 1 133556666677777788999986 778999765
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCcc
Q 004119 328 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 407 (773)
Q Consensus 328 ~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~ 407 (773)
+++.+-.| -|..+--++++. .++. +..+ .+..
T Consensus 93 -~~eLa~~l-------~~~~~~gel~r~--~~fK----------------dk~~------------------~~~~---- 124 (314)
T COG0180 93 -HAELAWLL-------SCVTNFGELERM--TQFK----------------DKSA------------------KKGE---- 124 (314)
T ss_pred -HHHHHHHH-------HccCcHHHHHhh--cCcc----------------hhhh------------------cccc----
Confidence 66665443 466666666543 1111 0000 0000
Q ss_pred EEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhC------CCCCceeeee--e-
Q 004119 408 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEYS--R- 478 (773)
Q Consensus 408 V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg------~~~P~~w~f~--~- 478 (773)
.+ . .| .-.||.-.-|..+ +.+-++|=.|.|-..|-....-|.+.++ +..|...... +
T Consensus 125 ---~~-~-----~G--l~~YPvlqAADIL---l~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i 190 (314)
T COG0180 125 ---SI-P-----IG--LLTYPVLQAADIL---LYQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARL 190 (314)
T ss_pred ---cc-c-----cc--chhccHHHHHHhh---hccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcc
Confidence 00 0 00 0125555544433 3345777778888777777777777776 4555332222 4
Q ss_pred ccCCC-ceecccccccccccCccCCCCCcc
Q 004119 479 LNVSN-TVMSKRKLNFLVTNKYVDGWDDPC 507 (773)
Q Consensus 479 Ln~~g-~kLSKRk~~~lv~~~~v~gWdDPr 507 (773)
..++| .|||||..+ +.+.=+|||.
T Consensus 191 ~gL~g~~KMSkS~~n-----s~I~L~D~~~ 215 (314)
T COG0180 191 PGLDGPGKMSKSDPN-----SAIFLLDDPK 215 (314)
T ss_pred cCCCCCCcccccCCC-----CeeeccCCHH
Confidence 36778 899999987 3344466664
No 80
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.57 E-value=0.0013 Score=70.57 Aligned_cols=222 Identities=16% Similarity=0.195 Sum_probs=129.3
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-----------cchHHHHHHHHHHHHHcCCC--CC-
Q 004119 258 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----------AEKKEYIDHIEEIVQWMGWE--PF- 317 (773)
Q Consensus 258 sPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-----------r~~~e~~~~I~edL~wLGi~--pd- 317 (773)
.||| .|||||.-.++ ++..-...|..+++=|-|. ||. .+.......+..++..+|+. |+
T Consensus 8 ~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k 86 (269)
T cd00805 8 DPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEK 86 (269)
T ss_pred CCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 5889 99999998765 4444444465666656552 342 12445677788889999996 65
Q ss_pred -CcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEec
Q 004119 318 -KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD 396 (773)
Q Consensus 318 -~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d 396 (773)
.+..||+..+.+ +...+++ +-|+++..++...-. ..+ |+.
T Consensus 87 ~~i~~~s~~~~~l--~~~~~l~----l~~~~~~~~l~~~~~-----------~k~--------------------r~~-- 127 (269)
T cd00805 87 AKFVNNSDWLLSL--YTLDFLR----LGKHFTVNRMLRRDA-----------VKV--------------------RLE-- 127 (269)
T ss_pred eEEEEchHhhccC--CHHHHHH----HHhhCcHHHHHHHHH-----------HHH--------------------HHh--
Confidence 477899986652 2222332 557777777754310 000 000
Q ss_pred CCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeee
Q 004119 397 MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEY 476 (773)
Q Consensus 397 ~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f 476 (773)
...+.++. . -.||.-+=+..+ ..+.++++.|.|-..+-..-.-+.+.++...|....+
T Consensus 128 -~~~~~~~~-----~-------------~~YP~lQaaDi~---~l~~~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~ 185 (269)
T cd00805 128 -EEEGISFS-----E-------------FIYPLLQAYDFV---YLDVDLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTT 185 (269)
T ss_pred -cCCCCcHH-----H-------------HHHHHHHHhhHH---HHhCCeeEecHHHHHHHHHHHHHHHHhCCCCcEEEee
Confidence 00000000 0 124544333332 3455888999888877777777778888877766556
Q ss_pred eec-cCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhh
Q 004119 477 SRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 554 (773)
Q Consensus 477 ~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~ 554 (773)
+.| +.+|.||||+.++.. . +.-=|+| .++....++-+++. +.+|+..+-. .+...++++.+++..
T Consensus 186 ~ll~~l~G~KMSKS~~~~~---~-i~l~dsp--~~i~~Ki~~a~~~~-v~~~l~~~~~------~~~~~~eel~~~~~~ 251 (269)
T cd00805 186 PLLTGLDGGKMSKSEGNAI---W-DPVLDSP--YDVYQKIRNAFDPD-VLEFLKLFTF------LDYEEIEELEEEHAE 251 (269)
T ss_pred ccccCCCCCcccCCCCCcc---c-ccCCCCH--HHHHHHHHcCCcHH-HHHHHHHHHc------CCHHHHHHHHHHHhc
Confidence 655 789999999997642 0 1122444 36766666667774 4565544322 123456666666643
No 81
>PLN02563 aminoacyl-tRNA ligase
Probab=97.54 E-value=0.00022 Score=88.44 Aligned_cols=94 Identities=23% Similarity=0.349 Sum_probs=71.1
Q ss_pred EEEEeCCCCCCc-CchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------cccchHHHHHHHHHHHHH
Q 004119 251 VLTRFPPEPNGY-LHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQW 311 (773)
Q Consensus 251 v~tRFaPsPtG~-LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----------------p~r~~~e~~~~I~edL~w 311 (773)
+++=-+|.|||. |||||+++.++.+.+||. ..|.-+|.+-.+| |.....++++.+.+.++.
T Consensus 113 ~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~ 192 (963)
T PLN02563 113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS 192 (963)
T ss_pred EEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence 555557999997 999999999999999994 5787777777776 112356788999999999
Q ss_pred cCC--CCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 312 MGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 312 LGi--~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
||+ +|+..+.+++ |.........+|.++|++|.
T Consensus 193 lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~ 229 (963)
T PLN02563 193 LGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQ 229 (963)
T ss_pred hCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 996 4666555544 44334455678999999886
No 82
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.47 E-value=0.0011 Score=73.24 Aligned_cols=179 Identities=18% Similarity=0.149 Sum_probs=100.0
Q ss_pred CCCCcCchhHHHHHHHHHHHH-HHcCCEEEEEeecCC-------cccchHHHHHHHHHHHHHcCCCCCC--cCCCchhHH
Q 004119 258 EPNGYLHIGHAKAMFVDFGLA-KERGGYCYLRYDDTN-------PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 327 (773)
Q Consensus 258 sPtG~LHIGhaRaal~n~~~A-r~~~G~~iLRidDTD-------p~r~~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~ 327 (773)
.|||.+||||.-.++-+|..- ..++..+++=|-|.- ++ +..++...+..++-.+|++|++ +.+||+.-+
T Consensus 11 qPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~-~l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~ 89 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPE-QFRSYTREVAATWLSLGLDPEDVIFYRQSDVPE 89 (332)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHH-HHHHHHHHHHHHHhheeecccceEEEECCCchH
Confidence 578999999999999998655 456665555555542 22 2334455566677789999985 778999744
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCcc
Q 004119 328 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 407 (773)
Q Consensus 328 ~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~ 407 (773)
..+.+- ...|.++-.++... ..| .+....-..+ |. .. .+.
T Consensus 90 -~~eL~~-------il~~~t~~g~L~R~--~~~---------K~k~~~~~~~--~~--------------~~-----~~~ 129 (332)
T PRK12556 90 -IFELAW-------ILSCLTPKGLMNRA--HAY---------KAKVDQNKEA--GL--------------DL-----DAG 129 (332)
T ss_pred -HHHHHH-------HHHccchHHHHHhc--cHH---------HHHHhhhhhh--cc--------------cc-----CCC
Confidence 333332 13566666655432 111 0000000000 00 00 000
Q ss_pred EEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhC------CCCCcee---eeee
Q 004119 408 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVW---EYSR 478 (773)
Q Consensus 408 V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg------~~~P~~w---~f~~ 478 (773)
+ ..| ...||.-.=|..+ +.+.+||.-|.|-..+-..-.-+.+.++ +..|... +..+
T Consensus 130 ~----------~~g--ll~YPvLqAADIl---~~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~ 194 (332)
T PRK12556 130 V----------NMG--LYTYPILMAADIL---LFQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAI 194 (332)
T ss_pred C----------cch--hhhchHHHhhhhh---hccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCceecccccccc
Confidence 0 000 1236666555544 5678899999887766655555555555 3445332 2223
Q ss_pred c-cCCCceecccccc
Q 004119 479 L-NVSNTVMSKRKLN 492 (773)
Q Consensus 479 L-n~~g~kLSKRk~~ 492 (773)
+ .++|.||||+.++
T Consensus 195 l~gLdg~KMSKS~~n 209 (332)
T PRK12556 195 LPGLDGRKMSKSYGN 209 (332)
T ss_pred ccCCCCCCCCCCCCC
Confidence 3 5688999999864
No 83
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.43 E-value=0.00029 Score=88.26 Aligned_cols=94 Identities=26% Similarity=0.258 Sum_probs=71.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc---------c-----------------------
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A----------------------- 296 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~---------r----------------------- 296 (773)
+++==||.|||.||||||++.++-+.+||. ..|.-++.+-.+|.. +
T Consensus 63 ~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~ 142 (995)
T PTZ00419 63 VIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVW 142 (995)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHH
Confidence 445558999999999999999999999994 578888888777721 1
Q ss_pred -chHHHHHHHHHHHHHcCCC--CCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 004119 297 -EKKEYIDHIEEIVQWMGWE--PFKITYTS--DYFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 297 -~~~e~~~~I~edL~wLGi~--pd~~~~qS--d~~~~~y~~a~~LI~~G~AY~ 344 (773)
-..+|.+.|.+.++.||+. |+..+++. +|....+....+|.++|+.|.
T Consensus 143 ~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr 195 (995)
T PTZ00419 143 EWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYR 195 (995)
T ss_pred HHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 0257788899999999965 65655444 455555566779999999886
No 84
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.42 E-value=0.0018 Score=71.54 Aligned_cols=189 Identities=19% Similarity=0.239 Sum_probs=110.6
Q ss_pred cHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC-----c--ccchHHHHHHHHHH
Q 004119 236 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN-----P--EAEKKEYIDHIEEI 308 (773)
Q Consensus 236 ~~~~~~~h~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTD-----p--~r~~~e~~~~I~ed 308 (773)
|.+-|.++++. +...+.=..=.|||.|||||+- ++.++......|..+++=|-|.- + ..........+..+
T Consensus 17 ~~~el~~~l~~-~~~~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~ 94 (329)
T PRK08560 17 TEEELRELLES-KEEPKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKV 94 (329)
T ss_pred CHHHHHHHHhC-CCCCEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHH
Confidence 46667777753 2333333455678999999976 45666666656777777676652 1 12345566677888
Q ss_pred HHHcCCCCCC--cCCCchhHHH--HHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcc
Q 004119 309 VQWMGWEPFK--ITYTSDYFQE--LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRI 384 (773)
Q Consensus 309 L~wLGi~pd~--~~~qSd~~~~--~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~ 384 (773)
+..+|++|++ +..||+.... |+..+..| .|.++-.++..... .. |+.
T Consensus 95 ~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l-------~~~~~~~~l~r~~~---------------------~~-~~~ 145 (329)
T PRK08560 95 FEALGLDPDKTEFVLGSEFQLDKEYWLLVLKL-------AKNTTLARARRSMT---------------------IM-GRR 145 (329)
T ss_pred HHHcCCChhheEEEecchhhccchHHHHHHHH-------HhhccHHHHHHhhh---------------------hh-ccc
Confidence 8899999875 6788886432 22222222 45565555543100 00 000
Q ss_pred cCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHH
Q 004119 385 EEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 464 (773)
Q Consensus 385 ~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~ 464 (773)
....+ .| .-.||.-+-|..+ +.+.++++.|.|-..+-..-.-+.+
T Consensus 146 ------------~~~~~------------------~g--~l~YP~lqaaDil---~~~ad~vpvG~DQ~~h~~l~Rdia~ 190 (329)
T PRK08560 146 ------------MEEPD------------------VS--KLVYPLMQVADIF---YLDVDIAVGGMDQRKIHMLAREVLP 190 (329)
T ss_pred ------------CCCCC------------------HH--HHHHHHHHHHHHH---HhCCCEEEechhHHHHHHHHHHhhH
Confidence 00000 00 0125555444443 4578899999887766555555667
Q ss_pred HhCCCCCceeeeeec-cCCCc--eecccc
Q 004119 465 ALGLYQPYVWEYSRL-NVSNT--VMSKRK 490 (773)
Q Consensus 465 aLg~~~P~~w~f~~L-n~~g~--kLSKRk 490 (773)
.++...|.....+.| +++|. |||||.
T Consensus 191 ~~n~~~p~~l~~~~l~~L~g~~~KMSKS~ 219 (329)
T PRK08560 191 KLGYKKPVCIHTPLLTGLDGGGIKMSKSK 219 (329)
T ss_pred hcCCCCceEEEcCccCCCCCCCCCCcCCC
Confidence 788777765555553 67776 999998
No 85
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.40 E-value=0.00037 Score=86.10 Aligned_cols=96 Identities=22% Similarity=0.218 Sum_probs=69.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc---------------------------------
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE--------------------------------- 295 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~--------------------------------- 295 (773)
+++=-||.|||.||||||++.++-+.+||. ..|..++..-..|-.
T Consensus 39 ~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~ 118 (861)
T TIGR00392 39 IFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCR 118 (861)
T ss_pred EEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHH
Confidence 556668999999999999999999999984 467766665555410
Q ss_pred cchHHHHHHHHHHHHHcCC--CCCCcCCCch--hHHHHHHHHHHHHHcCCcccCC
Q 004119 296 AEKKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYVDH 346 (773)
Q Consensus 296 r~~~e~~~~I~edL~wLGi--~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~C~ 346 (773)
.-..++++.+.+.++.||+ +|+..+.+.+ |.........+|.++|++|...
T Consensus 119 ~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~ 173 (861)
T TIGR00392 119 EFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGL 173 (861)
T ss_pred HHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecc
Confidence 1133578888999999999 6777666555 3222233456899999999643
No 86
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.33 E-value=0.00044 Score=85.83 Aligned_cols=94 Identities=22% Similarity=0.238 Sum_probs=68.6
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------------ccc-------chH
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------------PEA-------EKK 299 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----------------------p~r-------~~~ 299 (773)
+++==||.+||.||||||++.++-+.++|. ..|..++.+-.+| ++. -..
T Consensus 52 ~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~ 131 (912)
T PRK05743 52 ILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYAL 131 (912)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHH
Confidence 444458999999999999999999999984 4576666554444 221 234
Q ss_pred HHHHHHHHHHHHcCC--CCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 300 EYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 300 e~~~~I~edL~wLGi--~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
++.+.+.++++.||+ +|+..+++.+ |-........+|.++|+.|.
T Consensus 132 ~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~ 180 (912)
T PRK05743 132 EQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 567889999999999 7887665554 33334455678999999876
No 87
>PLN02943 aminoacyl-tRNA ligase
Probab=97.32 E-value=0.00064 Score=84.75 Aligned_cols=94 Identities=24% Similarity=0.318 Sum_probs=71.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc-----------------------cc--------
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE-----------------------AE-------- 297 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~-----------------------r~-------- 297 (773)
+++=-||.|||.||||||++..+-+.+||. ..|.-++.+-.+|.. |+
T Consensus 91 ~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~ 170 (958)
T PLN02943 91 VIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWE 170 (958)
T ss_pred EEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 556668999999999999999999999994 578888888777721 00
Q ss_pred -hHHHHHHHHHHHHHcCC--CCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 298 -KKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 298 -~~e~~~~I~edL~wLGi--~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
..+|...|.+.++.||+ +|+..+++.+ |.........+|-++|+.|.
T Consensus 171 ~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr 222 (958)
T PLN02943 171 WKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQ 222 (958)
T ss_pred HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 14678899999999998 4666655554 33333445568999999886
No 88
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=97.31 E-value=0.00049 Score=85.09 Aligned_cols=89 Identities=27% Similarity=0.327 Sum_probs=67.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc---------c---------c--------------hHHH
Q 004119 256 PPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A---------E--------------KKEY 301 (773)
Q Consensus 256 aPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~---------r---------~--------------~~e~ 301 (773)
||.+||.||||||.+.++-+.+||. ..|.-+|.+-.||-. + . ..+|
T Consensus 44 pP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~ 123 (874)
T PRK05729 44 PPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEES 123 (874)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999984 578888888777721 0 0 3567
Q ss_pred HHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 302 IDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 302 ~~~I~edL~wLGi~--pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
.+.|.+.++.||+. |+..+++.| |-........+|.++|+.|.
T Consensus 124 ~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 170 (874)
T PRK05729 124 GGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYR 170 (874)
T ss_pred HHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEee
Confidence 89999999999975 656555544 33334455678999999876
No 89
>PLN02843 isoleucyl-tRNA synthetase
Probab=97.30 E-value=0.0005 Score=85.80 Aligned_cols=94 Identities=24% Similarity=0.198 Sum_probs=67.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC-----------------------cccc-------h
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-----------------------PEAE-------K 298 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD-----------------------p~r~-------~ 298 (773)
+++==||.+||.||||||.+.++-+.++|. ..|.-++.+-.+| ++.. .
T Consensus 35 ~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~ 114 (974)
T PLN02843 35 TLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFA 114 (974)
T ss_pred EEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHH
Confidence 344448999999999999999999999984 3566555554444 1111 3
Q ss_pred HHHHHHHHHHHHHcCC--CCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 299 KEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 299 ~e~~~~I~edL~wLGi--~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
.++++.+.++++.||+ +|+..+++.+ |-........+|.++|+.|.
T Consensus 115 ~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr 164 (974)
T PLN02843 115 KKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 4567788999999999 7887766554 33333345568999999776
No 90
>PLN02486 aminoacyl-tRNA ligase
Probab=97.28 E-value=0.012 Score=66.42 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=52.5
Q ss_pred CCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC----Cc---ccchHHHHHHHHHHHHHcCCCCCC--cCCCchh
Q 004119 256 PPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP---EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDY 325 (773)
Q Consensus 256 aPsPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT----Dp---~r~~~e~~~~I~edL~wLGi~pd~--~~~qSd~ 325 (773)
.=.||| .|||||+-.+++.-.+-+..|..+++-|.|- .. -.+..++......++..+|++|++ ++.++++
T Consensus 79 G~~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~ 158 (383)
T PLN02486 79 GRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDY 158 (383)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHH
Confidence 347888 5999999998877666666677777777761 11 112334556667777889999975 5566666
Q ss_pred HH-HHHHHHHH
Q 004119 326 FQ-ELYELAVE 335 (773)
Q Consensus 326 ~~-~~y~~a~~ 335 (773)
.. .+|..+.+
T Consensus 159 ~~~~~~~~~~~ 169 (383)
T PLN02486 159 VGGAFYKNMVK 169 (383)
T ss_pred HhHhHHHHHHH
Confidence 63 34444433
No 91
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=97.26 E-value=0.00046 Score=86.74 Aligned_cols=94 Identities=24% Similarity=0.272 Sum_probs=69.8
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc---------c-----------------------
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A----------------------- 296 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~---------r----------------------- 296 (773)
+++==||.|||.|||||+++.++-+.++|. ..|.-++.+-.+|.. +
T Consensus 51 ~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~ 130 (1052)
T PRK14900 51 SIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVW 130 (1052)
T ss_pred EEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHH
Confidence 444558999999999999999999999994 578877777777721 1
Q ss_pred -chHHHHHHHHHHHHHcCCC--CCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 004119 297 -EKKEYIDHIEEIVQWMGWE--PFKITYTS--DYFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 297 -~~~e~~~~I~edL~wLGi~--pd~~~~qS--d~~~~~y~~a~~LI~~G~AY~ 344 (773)
-..++.+.|.+.++.||+. |+..+++. +|.........+|.++|+.|.
T Consensus 131 ~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr 183 (1052)
T PRK14900 131 AWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYR 183 (1052)
T ss_pred HHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 0245778899999999965 65554433 454444556678999999886
No 92
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.00026 Score=85.74 Aligned_cols=91 Identities=24% Similarity=0.364 Sum_probs=66.2
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEE---EEeecC-------------CcccchHHHHHHHHHHHHHcC
Q 004119 252 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCY---LRYDDT-------------NPEAEKKEYIDHIEEIVQWMG 313 (773)
Q Consensus 252 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~i---LRidDT-------------Dp~r~~~e~~~~I~edL~wLG 313 (773)
++=-=|-|||.||+||+|+..+.+.+||. ..|.=| +=+|-+ ||..-...+++.+.++|+.||
T Consensus 38 vl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG 117 (814)
T COG0495 38 VLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLG 117 (814)
T ss_pred EEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhC
Confidence 44445899999999999999999999984 344433 334433 566667889999999999999
Q ss_pred CC--CCCcCCCchhHHHHHHHH----HHHHHcCCccc
Q 004119 314 WE--PFKITYTSDYFQELYELA----VELIRRGHAYV 344 (773)
Q Consensus 314 i~--pd~~~~qSd~~~~~y~~a----~~LI~~G~AY~ 344 (773)
+. |+....++|= .||.+. .+|-++|++|.
T Consensus 118 ~siDW~Ref~T~Dp--~Yyk~~QW~F~kL~ekGL~y~ 152 (814)
T COG0495 118 FSIDWRREFATCDP--EYYKWIQWQFLKLYEKGLAYR 152 (814)
T ss_pred CccccccceecCCc--cHHHHHHHHHHHHHHCCCEEe
Confidence 76 5554444442 255543 48999999996
No 93
>PLN02381 valyl-tRNA synthetase
Probab=97.22 E-value=0.00068 Score=85.23 Aligned_cols=95 Identities=27% Similarity=0.337 Sum_probs=70.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc---------c-----------------------
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A----------------------- 296 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~---------r----------------------- 296 (773)
+++==||.+||.||||||++..+-+.+||. ..|.-++..-.+|-. +
T Consensus 131 ~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~ 210 (1066)
T PLN02381 131 VIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVW 210 (1066)
T ss_pred EEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHH
Confidence 455559999999999999999999999994 467777777777621 0
Q ss_pred -chHHHHHHHHHHHHHcCC--CCCCcCCCch--hHHHHHHHHHHHHHcCCcccC
Q 004119 297 -EKKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYVD 345 (773)
Q Consensus 297 -~~~e~~~~I~edL~wLGi--~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~C 345 (773)
-..+|.+.|.+.++.||+ +|+..+++.+ |.........+|.++|+.|..
T Consensus 211 ~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 264 (1066)
T PLN02381 211 KWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRD 264 (1066)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 024668888999999996 4666666554 333334455689999998863
No 94
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=97.19 E-value=0.0009 Score=79.57 Aligned_cols=93 Identities=25% Similarity=0.283 Sum_probs=62.6
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc---------------------------------c
Q 004119 252 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------------------------------A 296 (773)
Q Consensus 252 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~---------------------------------r 296 (773)
++==||.+||.||+|||++..+-+.+||. ..|..++..=-.|-. .
T Consensus 27 i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~ 106 (601)
T PF00133_consen 27 IHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECRE 106 (601)
T ss_dssp EEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHH
T ss_pred EEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcc
Confidence 33348999999999999999999999984 467666655444410 0
Q ss_pred chHHHHHHHHHHHHHcCC--CCCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 004119 297 EKKEYIDHIEEIVQWMGW--EPFKITYTS--DYFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 297 ~~~e~~~~I~edL~wLGi--~pd~~~~qS--d~~~~~y~~a~~LI~~G~AY~ 344 (773)
-..++.+.+.++++.||+ +|+..+++. +|-........+|.++|+.|.
T Consensus 107 ~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr 158 (601)
T PF00133_consen 107 WAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEE
T ss_pred hhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEe
Confidence 134678888999999997 466654443 344444455679999999986
No 95
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.18 E-value=0.0008 Score=84.15 Aligned_cols=94 Identities=23% Similarity=0.277 Sum_probs=69.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc---------------------------------
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE--------------------------------- 295 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~--------------------------------- 295 (773)
+++==||.|||.||+|||++..+-+.++|. ..|.-+++.=..|-.
T Consensus 44 ~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~ 123 (975)
T PRK06039 44 VFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCR 123 (975)
T ss_pred EEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHH
Confidence 334448999999999999999999999994 578877776665510
Q ss_pred cchHHHHHHHHHHHHHcC--CCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 296 AEKKEYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 296 r~~~e~~~~I~edL~wLG--i~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
....+|.+.+.+.++.|| ++|+..+.+.+ |.+.......+|.++|+.|.
T Consensus 124 ~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr 176 (975)
T PRK06039 124 ESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYK 176 (975)
T ss_pred HHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 123467888999999999 56777666655 33333334568999999886
No 96
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=97.16 E-value=0.00086 Score=84.97 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=70.1
Q ss_pred EeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc---------c------------------------ch
Q 004119 254 RFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A------------------------EK 298 (773)
Q Consensus 254 RFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~---------r------------------------~~ 298 (773)
==||.+||.||||||.+.++-+.++|. ..|.-+++.-.+|-. + ..
T Consensus 108 ~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~ 187 (1205)
T PTZ00427 108 DGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIV 187 (1205)
T ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHH
Confidence 338999999999999999999999994 578888888877710 0 12
Q ss_pred HHHHHHHHHHHHHcC--CCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 299 KEYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 299 ~e~~~~I~edL~wLG--i~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
.+|.+.+.+.++.|| ++|+..+++.+ |.........+|.++|+.|.
T Consensus 188 ~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr 237 (1205)
T PTZ00427 188 LKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYK 237 (1205)
T ss_pred HHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 456788899999999 78888766654 44444455678999999876
No 97
>PLN02882 aminoacyl-tRNA ligase
Probab=97.06 E-value=0.0013 Score=83.45 Aligned_cols=89 Identities=20% Similarity=0.192 Sum_probs=68.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc----------------c-----------------chHH
Q 004119 256 PPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE----------------A-----------------EKKE 300 (773)
Q Consensus 256 aPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~----------------r-----------------~~~e 300 (773)
||.+||.+|||||++.++-+.++|. ..|.-+++.-.+|-. + ...+
T Consensus 46 PPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~ 125 (1159)
T PLN02882 46 PPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTR 125 (1159)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHH
Confidence 8999999999999999999999994 578888887777610 0 1346
Q ss_pred HHHHHHHHHHHcC--CCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 301 YIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 301 ~~~~I~edL~wLG--i~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
|.+.+.+.++.|| ++|+..|++.+ |.........+|.++|+.|.
T Consensus 126 ~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr 173 (1159)
T PLN02882 126 YSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 7888899999999 77887766554 44444455678999999776
No 98
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=97.02 E-value=0.001 Score=82.79 Aligned_cols=94 Identities=23% Similarity=0.205 Sum_probs=62.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEE---eecCC--------------------------------
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLR---YDDTN-------------------------------- 293 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLR---idDTD-------------------------------- 293 (773)
+++==+|.|||.|||||+++.++-+.+||. ..|.-+|. +|.+-
T Consensus 28 ~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i 107 (938)
T TIGR00395 28 FLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREEL 107 (938)
T ss_pred EEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHH
Confidence 455558999999999999999999999984 34554443 22211
Q ss_pred -----cccchHHHHHHHHHHHHHcCCC--CCCcCCCch-hHH-HHHHHHHHHHHcCCccc
Q 004119 294 -----PEAEKKEYIDHIEEIVQWMGWE--PFKITYTSD-YFQ-ELYELAVELIRRGHAYV 344 (773)
Q Consensus 294 -----p~r~~~e~~~~I~edL~wLGi~--pd~~~~qSd-~~~-~~y~~a~~LI~~G~AY~ 344 (773)
|..-...|...+.++++.||+. |+..+.+.+ ++. .......+|-++|+.|.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~ 167 (938)
T TIGR00395 108 LKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVK 167 (938)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEec
Confidence 1111245567889999999986 656555544 222 22233468999999775
No 99
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.0022 Score=78.00 Aligned_cols=90 Identities=29% Similarity=0.320 Sum_probs=69.5
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc-----------------------cc---------hHH
Q 004119 255 FPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE-----------------------AE---------KKE 300 (773)
Q Consensus 255 FaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~-----------------------r~---------~~e 300 (773)
=||++||.||||||....+-+.++|. ..|.-+|=+-.||.. |+ +++
T Consensus 40 PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e 119 (877)
T COG0525 40 PPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEE 119 (877)
T ss_pred CCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Confidence 37999999999999999999999984 467777777777621 11 467
Q ss_pred HHHHHHHHHHHcCCC--CCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 004119 301 YIDHIEEIVQWMGWE--PFKITYTS--DYFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 301 ~~~~I~edL~wLGi~--pd~~~~qS--d~~~~~y~~a~~LI~~G~AY~ 344 (773)
+...|.+.++.||+. |+..+++- .+.....+...+|-++|..|.
T Consensus 120 ~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr 167 (877)
T COG0525 120 SGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYR 167 (877)
T ss_pred HHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceee
Confidence 889999999999986 55544443 355556677789999999997
No 100
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=96.91 E-value=0.002 Score=80.39 Aligned_cols=94 Identities=21% Similarity=0.154 Sum_probs=66.3
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC-------------------------ccc-------
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-------------------------PEA------- 296 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD-------------------------p~r------- 296 (773)
++.==||.+||.||||||++.++-+.++|. ..|..++.+=..| ++.
T Consensus 57 ~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~ 136 (961)
T PRK13804 57 VLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECRE 136 (961)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHH
Confidence 444458999999999999999999999984 3566555544444 110
Q ss_pred chHHHHHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 297 EKKEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 297 ~~~e~~~~I~edL~wLGi~--pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
-..++++.+.++++.||+- |+..+.+.+ |.........+|.++|+.|.
T Consensus 137 ~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr 188 (961)
T PRK13804 137 YALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYR 188 (961)
T ss_pred HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 1345677889999999985 777665554 33333344568999999776
No 101
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=96.85 E-value=0.044 Score=62.50 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=57.8
Q ss_pred CcceeecCcccccchHHHHHHHHHhCCCCCceeeeeec-cCCCceecccccccccccCccCCCCCcc---cccHHHHHHc
Q 004119 442 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPC---LMTLAGLRRR 517 (773)
Q Consensus 442 gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr---~~tL~~lrrr 517 (773)
+.+..+-|.|-..|-..=.-|.+.++...|.....+.| +.+|+||||+.++. | |=|+- ...+.....
T Consensus 186 ~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~na-I-------~L~d~~tsp~~i~qki~- 256 (410)
T PRK13354 186 DVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAGGA-I-------WLDPEKTSPYEFYQFWM- 256 (410)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCCCc-e-------eccCCCCCHHHHHHHHH-
Confidence 66777778776666555555667777766644444554 78899999998752 1 33333 233444333
Q ss_pred CCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhh
Q 004119 518 GVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 554 (773)
Q Consensus 518 G~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~ 554 (773)
..++..+..|+..+-. .+...++++.+.+..
T Consensus 257 ~~~D~~v~~~l~~~t~------l~~~ei~~l~~~~~~ 287 (410)
T PRK13354 257 NIDDRDVVKYLKLFTD------LSPDEIDELEAQLET 287 (410)
T ss_pred cCChHHHHHHHHHHhC------CCHHHHHHHHHHHhc
Confidence 3666677677655421 234445555555543
No 102
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=96.78 E-value=0.0033 Score=68.02 Aligned_cols=174 Identities=18% Similarity=0.183 Sum_probs=101.4
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc----cchHHHHHHHHHH--HHHcCCCCCC--cCCCch
Q 004119 258 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE----AEKKEYIDHIEEI--VQWMGWEPFK--ITYTSD 324 (773)
Q Consensus 258 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~----r~~~e~~~~I~ed--L~wLGi~pd~--~~~qSd 324 (773)
.|||.|||||+-+.. ++......|..+++=|-|. |+. +........+..+ +-.+|++|++ +..||+
T Consensus 13 ~PTg~lHlG~l~~~~-~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~ 91 (292)
T PF00579_consen 13 DPTGDLHLGHLVPIM-KLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSD 91 (292)
T ss_dssp ESSSS-BHHHHHHHH-HHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHH
T ss_pred CCCCcccchHHHHHH-HHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCC
Confidence 578999999888864 5555555888888877665 233 3344455555555 6789999964 778998
Q ss_pred hHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCc
Q 004119 325 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 404 (773)
Q Consensus 325 ~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~ 404 (773)
+.... ++...|...+. .-++... ..+..+.. ++..+ ...++
T Consensus 92 ~~~~~-~~~~~l~~~~~-------~~~l~~~------------------~~~~~~~~-~~~~~------------~~~~~ 132 (292)
T PF00579_consen 92 WPEHM-ELWWFLSDVAR-------LFSLNRM------------------LRFKDVKK-RLKNG------------EGISL 132 (292)
T ss_dssp HHCHH-HHHHHHHHHHB-------HHHHHHH------------------HHHHHHHH-HHSST------------TTSBH
T ss_pred ccccc-chhhhhccccc-------ccchhhh------------------hhhccccc-ccccc------------cCcce
Confidence 76544 55544443322 1122221 01111110 00000 00000
Q ss_pred CccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCC----CCceeeeeec-
Q 004119 405 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY----QPYVWEYSRL- 479 (773)
Q Consensus 405 ~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~----~P~~w~f~~L- 479 (773)
. ...||..+= .|=...+.++++.|.|-..+-..-.-+.+.++.. .|.....+.|
T Consensus 133 ~------------------~~~Yp~lQa---aD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~ 191 (292)
T PF00579_consen 133 G------------------EFSYPLLQA---ADILLLKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLP 191 (292)
T ss_dssp H------------------HHHHHHHHH---HHHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBB
T ss_pred e------------------eEEcccccc---cceeeeccccccccchHHHHHHHHHHHHhhhcccccccCchheeecccc
Confidence 0 123565443 3333556679999998877776666677778776 7766666654
Q ss_pred cCCCc-eecccccc
Q 004119 480 NVSNT-VMSKRKLN 492 (773)
Q Consensus 480 n~~g~-kLSKRk~~ 492 (773)
..+|+ ||||+.++
T Consensus 192 ~l~G~~KMSKS~~n 205 (292)
T PF00579_consen 192 GLDGQKKMSKSDPN 205 (292)
T ss_dssp STTSSSBTTTTTTG
T ss_pred ccCCccccCccCCc
Confidence 67888 99999988
No 103
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.78 E-value=0.0028 Score=70.16 Aligned_cols=74 Identities=24% Similarity=0.307 Sum_probs=46.4
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC----Cc--ccchHHHHHHHHHHHHHcCCCCCC--cCCCchhHHHH
Q 004119 258 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP--EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQEL 329 (773)
Q Consensus 258 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT----Dp--~r~~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~~~ 329 (773)
.|||.|||||.-.++-+|..-... ..+++=|-|. ++ ..+..++...+..++-.+|++|++ +..||+..+ +
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~-~ 86 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPE-H 86 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCch-h
Confidence 588999999999777777433332 3444444432 21 123344555667777789999975 678998543 4
Q ss_pred HHHH
Q 004119 330 YELA 333 (773)
Q Consensus 330 y~~a 333 (773)
.+++
T Consensus 87 ~el~ 90 (333)
T PRK00927 87 AELA 90 (333)
T ss_pred HHHH
Confidence 4433
No 104
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.76 E-value=0.011 Score=63.67 Aligned_cols=174 Identities=15% Similarity=0.160 Sum_probs=97.9
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cc-----------ccchHHHHHHHHHHHHHcCCC--CCC
Q 004119 258 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP-----------EAEKKEYIDHIEEIVQWMGWE--PFK 318 (773)
Q Consensus 258 sPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp-----------~r~~~e~~~~I~edL~wLGi~--pd~ 318 (773)
.||| .|||||.-. +.++..-...|..+++=|-|- || ..+..+....|..++..+|++ |++
T Consensus 7 ~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k 85 (273)
T cd00395 7 DPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQ 85 (273)
T ss_pred cCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 5889 799999988 566665555555544433221 23 223445667788889999998 764
Q ss_pred --cCCCchhHH--HHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEE
Q 004119 319 --ITYTSDYFQ--ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 394 (773)
Q Consensus 319 --~~~qSd~~~--~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K 394 (773)
+..||+... .+++++..| -|+.+-.++...- + |.+ |++
T Consensus 86 ~~i~~ns~~~~~~~~~~l~~~l-------~~~~~~~~l~~~~-----------~-------~k~-------------r~~ 127 (273)
T cd00395 86 ATLFNNSDWPGPLAHIQFLRDL-------GKHVYVNYMERKT-----------S-------FQS-------------RSE 127 (273)
T ss_pred eEEEEccccCCcccHHHHHHHH-------HccCcHHHHHhCh-----------H-------HHH-------------Hhc
Confidence 778998764 355554443 3455555554220 0 000 000
Q ss_pred ecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccc-cccCCcceeecCcccccchHHHHHHHHHhC-CCCCc
Q 004119 395 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIV-DSIENITHSLCTLEFETRRASYFWLLHALG-LYQPY 472 (773)
Q Consensus 395 ~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VD-D~~~gITHviRg~E~~~~~~~q~~L~~aLg-~~~P~ 472 (773)
+ ..++ .. -.||.-+=+..+- ..-.+.++++.|.|=..|-..-.-|.+.++ ...|.
T Consensus 128 -~----~~~~-----~~-------------~~Yp~lQaaD~l~l~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~ 184 (273)
T cd00395 128 -E----GISA-----TE-------------FTYPPLQAADFLLLNTTEGCDIQPGGSDQWGNITLGRELARRFNGFTIAE 184 (273)
T ss_pred -C----CCCc-----hh-------------hhhHHHHHHHHHHHhcccCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCe
Confidence 0 0000 00 0133222221110 111455888888877766665556667774 55676
Q ss_pred eeeeeec-cCCCceeccccccc
Q 004119 473 VWEYSRL-NVSNTVMSKRKLNF 493 (773)
Q Consensus 473 ~w~f~~L-n~~g~kLSKRk~~~ 493 (773)
....++| +.+|.||||+.++.
T Consensus 185 ~l~~p~l~~l~G~KMSKS~~~~ 206 (273)
T cd00395 185 GLTIPLVTKLDGPKFGKSESGP 206 (273)
T ss_pred EEeeccccCCCCCcCCCCCCCC
Confidence 5555664 77999999999764
No 105
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=96.70 E-value=0.035 Score=62.72 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=51.9
Q ss_pred cHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc----cchHHHHHHHH
Q 004119 236 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE----AEKKEYIDHIE 306 (773)
Q Consensus 236 ~~~~~~~h~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~----r~~~e~~~~I~ 306 (773)
|.+-|.+.++. +...++=..=.|||.+||||.-.-.++|.--...|..+++=|-|. |+. .........+.
T Consensus 53 ~~eel~~~l~~-~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~ 131 (383)
T PTZ00126 53 QPEELRELLKL-KERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFI 131 (383)
T ss_pred CHHHHHHHHhc-CCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHH
Confidence 35556666643 233333334467899999993111122222234466666656554 121 12234455566
Q ss_pred HHHHHcCCCCCC--cCCCchhHHH
Q 004119 307 EIVQWMGWEPFK--ITYTSDYFQE 328 (773)
Q Consensus 307 edL~wLGi~pd~--~~~qSd~~~~ 328 (773)
..+..+|++|++ +.+||+++..
T Consensus 132 ~~~~A~GlDp~k~~i~~qS~~v~~ 155 (383)
T PTZ00126 132 EVWKAAGMDMDNVRFLWASEEINK 155 (383)
T ss_pred HHHHHhCCCccceEEEECChhhhh
Confidence 678889999975 7789986543
No 106
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=96.57 E-value=0.072 Score=60.76 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=54.8
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeec----C-Ccc-c----------chH
Q 004119 237 KEVLDKHLEVTGGNVLTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDD----T-NPE-A----------EKK 299 (773)
Q Consensus 237 ~~~~~~h~~~~~g~v~tRFaPsPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidD----T-Dp~-r----------~~~ 299 (773)
.+-+.++++...-.+.+=| .||| .|||||+-+ +.++..-...|...++=+-| | ||+ + +..
T Consensus 22 ~~~l~~~l~~~~~~vy~G~--dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~ 98 (408)
T PRK05912 22 EEELEEKLAKEPLRIYLGF--DPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVA 98 (408)
T ss_pred HHHHHHHhhCCCCEEEEee--cCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHH
Confidence 5556667763222344444 6788 599999985 56666666666666665544 2 443 1 234
Q ss_pred HHHHHHHHHHHHcCCCCCC----cCCCchhHHH
Q 004119 300 EYIDHIEEIVQWMGWEPFK----ITYTSDYFQE 328 (773)
Q Consensus 300 e~~~~I~edL~wLGi~pd~----~~~qSd~~~~ 328 (773)
.+.+.|.+.+ +.|++|++ +.++|+.++.
T Consensus 99 ~n~~~i~~ql-~~~ld~~k~~~~i~~nsd~~~~ 130 (408)
T PRK05912 99 ENAETIKEQL-FKFLDFEKDGAEIVNNSDWLGK 130 (408)
T ss_pred HHHHHHHHHH-HHhcCcCcCcEEEEECCCcCCc
Confidence 4555565555 77898865 7789987653
No 107
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.0044 Score=72.54 Aligned_cols=95 Identities=24% Similarity=0.362 Sum_probs=65.4
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHc--CCEEEEEe----------------ecCCcccchHHHHHHHHHHHHH
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGYCYLRY----------------DDTNPEAEKKEYIDHIEEIVQW 311 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~--~G~~iLRi----------------dDTDp~r~~~e~~~~I~edL~w 311 (773)
+.+.-.=|-|+|-|||||.|...+++.+||.| .|.=++.- ..++|..-...-++.+.+.|..
T Consensus 59 KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~~ 138 (876)
T KOG0435|consen 59 KYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLKS 138 (876)
T ss_pred ceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHHH
Confidence 35555557999999999999999999999954 56544422 1233444466778888999999
Q ss_pred cCCC--CCC-c-CCCchhHHHHHHHHHHHHHcCCccc
Q 004119 312 MGWE--PFK-I-TYTSDYFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 312 LGi~--pd~-~-~~qSd~~~~~y~~a~~LI~~G~AY~ 344 (773)
||+. ||. + +-..||+.=-+=...+|.++|+||.
T Consensus 139 lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 139 LGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQ 175 (876)
T ss_pred cCcccccccccccCCcchhHHHHHHHHHHHHhhhhhc
Confidence 9986 664 3 3334443211122458999999996
No 108
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.077 Score=61.11 Aligned_cols=140 Identities=24% Similarity=0.387 Sum_probs=100.3
Q ss_pred HHHHHH-HhcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh---------------------------
Q 004119 11 EILELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT--------------------------- 62 (773)
Q Consensus 11 ~~~~~f-~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~--------------------------- 62 (773)
+..+.| ...|||++-|.++++.+.+ .-+.++.+. ++. +.-.+..|.+
T Consensus 458 ek~~r~~~eygLs~~LA~~~~~~~~~-~~FEel~e~-~v~---p~~~A~~L~~~~~~L~reg~~i~~l~~~~i~~~~~~~ 532 (631)
T COG2511 458 EKVERYVKEYGLSKELAEQLASDPRV-DLFEELVEK-GVD---PTLIASTLVNTLPELRREGVEIDNLDDEHIEELLRLV 532 (631)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhhhH-HHHHHHHHc-CCC---HHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHHHH
Confidence 344444 5589999999999887543 233333332 221 0111111111
Q ss_pred ----ccCHHHHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhh
Q 004119 63 ----IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKR 138 (773)
Q Consensus 63 ----lks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~ 138 (773)
| +..++..+++.+.+++ .-|.++.-+..|.. ..|.|||++.|.+++++|...+.+.+-.. +|.||+.+=..
T Consensus 533 ~~g~i-ake~iee~l~~l~~~p--~~~~~e~~~~~gL~-~ls~eEve~iI~eii~~~~d~i~~rg~~a-~g~lmg~~M~~ 607 (631)
T COG2511 533 SEGKI-AKEAIEEILKALAENP--GKDAAEIAEKLGLK-ELSEEEVEKIIDEIIESNLDVIKERGMGA-MGLLMGRVMAK 607 (631)
T ss_pred hcccc-hHHHHHHHHHHHHhCC--CCCHHHHHHHhccc-cCCHHHHHHHHHHHHHhhHHHHHHhchhh-HHHHHHHHHHH
Confidence 3 3578999999998875 56888888888864 59999999999999999999888877776 89999985333
Q ss_pred -CCCCChhhHHHHHHHHHHHhcC
Q 004119 139 -LPWADPKIVKQLIDARMYELLG 160 (773)
Q Consensus 139 -LkWAd~k~vK~~vd~~~~~llg 160 (773)
=-=|||+.|...+.+.+.+.+|
T Consensus 608 ~rg~aDgk~v~e~lr~~i~e~~~ 630 (631)
T COG2511 608 LRGRADGKLVSEILREKLQEILG 630 (631)
T ss_pred hhccCCcHHHHHHHHHHHHHhhc
Confidence 3469999999999999888776
No 109
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=95.86 E-value=0.052 Score=49.79 Aligned_cols=39 Identities=54% Similarity=0.909 Sum_probs=28.9
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCccc
Q 004119 253 TRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA 296 (773)
Q Consensus 253 tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r 296 (773)
+.|+.++ |++|+||...+-- |......+++.|.|.++..
T Consensus 2 ~~~~G~F-dp~H~GH~~l~~~----a~~~~d~~i~~i~~~~~~~ 40 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKLICR----AKGIADQCVVRIDDNPPVK 40 (105)
T ss_pred EEeCCCC-CCCCHHHHHHHHH----HHHhCCcEEEEEcCCCccc
Confidence 5789999 9999999997433 3333367889998877544
No 110
>PLN02959 aminoacyl-tRNA ligase
Probab=95.74 E-value=0.021 Score=72.36 Aligned_cols=38 Identities=34% Similarity=0.359 Sum_probs=29.3
Q ss_pred eEEEEeC-CCCCCcCchhHHHHHHHHHHHHHH--cCCEEEE
Q 004119 250 NVLTRFP-PEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYL 287 (773)
Q Consensus 250 ~v~tRFa-PsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iL 287 (773)
+...=|| |.+||.||||||++..+-..+||. ..|.-+|
T Consensus 46 kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vl 86 (1084)
T PLN02959 46 KFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVL 86 (1084)
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccC
Confidence 3455665 999999999999999999999984 3444333
No 111
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=0.006 Score=70.38 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=62.0
Q ss_pred cccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcCCCceeeEecceeEEEEe
Q 004119 508 LMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN 573 (773)
Q Consensus 508 ~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~dp~kl~i~N 573 (773)
..++..++..||.|+||.+|++.+||+.+...++.+.+++++..|+.......++.||..||.|.|
T Consensus 257 ~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n 322 (472)
T COG0008 257 AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLN 322 (472)
T ss_pred ccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhh
Confidence 467889999999999999999999999976678899999999999999999999999999999988
No 112
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=95.37 E-value=0.041 Score=68.91 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=49.8
Q ss_pred Ccee-eeeeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHH
Q 004119 471 PYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 549 (773)
Q Consensus 471 P~~w-~f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~ 549 (773)
|..| ++|++..+|+|||||+|| ..++..+.++ |.++++|.||+..|-...+..++.+.+.+..
T Consensus 605 Pk~i~~~G~vl~~G~KMSKSlGN---------------vI~p~d~i~~-yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~ 668 (938)
T TIGR00395 605 PRGIVVNGYVMLEGKKMSKSKGN---------------VLTLEQAVEK-FGADVARLYIADAAETVQDADWKESEVEGTI 668 (938)
T ss_pred CcEEEEeceEEeCCccccCcCCC---------------CCCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHH
Confidence 5444 468888899999999999 4678888876 9999999999988755555567777666554
Q ss_pred H
Q 004119 550 R 550 (773)
Q Consensus 550 r 550 (773)
+
T Consensus 669 ~ 669 (938)
T TIGR00395 669 L 669 (938)
T ss_pred H
Confidence 3
No 113
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.15 E-value=0.046 Score=66.02 Aligned_cols=92 Identities=30% Similarity=0.375 Sum_probs=70.0
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc------------------------cc---------hH
Q 004119 255 FPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE------------------------AE---------KK 299 (773)
Q Consensus 255 FaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~------------------------r~---------~~ 299 (773)
=||+.||.||||||-++.+-+.+||. ..|.-+|=+-.||.+ |+ ..
T Consensus 82 PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~ 161 (995)
T KOG0432|consen 82 PPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKE 161 (995)
T ss_pred CCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHH
Confidence 37899999999999999999999994 478888887777732 11 45
Q ss_pred HHHHHHHHHHHHcCCC--CCCcCCCch-hHH-HHHHHHHHHHHcCCcccCC
Q 004119 300 EYIDHIEEIVQWMGWE--PFKITYTSD-YFQ-ELYELAVELIRRGHAYVDH 346 (773)
Q Consensus 300 e~~~~I~edL~wLGi~--pd~~~~qSd-~~~-~~y~~a~~LI~~G~AY~C~ 346 (773)
+|-..|.+.|+.||-. |+...|+-| .+. ..-+....|-++|..|...
T Consensus 162 e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~ 212 (995)
T KOG0432|consen 162 EYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRAN 212 (995)
T ss_pred HhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecC
Confidence 7788899999999964 776655544 222 2336677999999999854
No 114
>PLN02751 glutamyl-tRNA(Gln) amidotransferase
Probab=94.72 E-value=0.56 Score=55.24 Aligned_cols=142 Identities=17% Similarity=0.204 Sum_probs=100.4
Q ss_pred hHHHHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh----------------ccCHHHHHHHH
Q 004119 10 SEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT----------------IKTPAQLEAAF 73 (773)
Q Consensus 10 ~~~~~~f~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~----------------lks~~Ql~aA~ 73 (773)
++..+.|...||++.-|.-++.++.++.-+++++.. +. -++..++.|.+ .-++.+|.+-+
T Consensus 367 ~~~~~Rl~~~gLs~~dA~~L~~~~~~a~ffe~~~~~-~~---~~k~~anwi~~el~~~l~~~~~~i~~~~l~p~~laeLi 442 (544)
T PLN02751 367 EAKRRRYENMGLSMQDVLFLANDKNVAEFFDATLAK-GA---DAKLAANWIMGDIAAYLKNEKVSISEIKLTPKELAELI 442 (544)
T ss_pred HHHHHHHHHcCCCHHHHHHHHcCcHHHHHHHHHHHc-CC---CHHHHHHHHHHHHHHHHHhCCCChhhcCCCHHHHHHHH
Confidence 344666788999999999999998888888877654 21 23555554444 13467777777
Q ss_pred HHHHhcC--------------CCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhc--cccchhhhHHHHHh
Q 004119 74 SFFASTG--------------SENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLFAHVRK 137 (773)
Q Consensus 74 ~yl~~~~--------------~~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~~vr~ 137 (773)
+.+.+.. ...-+.+++-++-|...+-.+++|++.|+++|++|...+.+-| -..-+|-|||+|-+
T Consensus 443 ~li~~g~Is~~~AK~vl~~~~~~~~~p~~iiee~gL~qisD~~~l~~iv~evi~~np~~V~~~k~Gk~k~~g~lvGqVMK 522 (544)
T PLN02751 443 ASIKDGTISGKIGKEILPELLAKGGTVKGLVEEKGLVQISDPAEIEAMVDKVLEENPKQLEQYRGGKTKLQGFFAGQVMK 522 (544)
T ss_pred HHHHcCCccHHHHHHHHHHHHhCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHHHHH
Confidence 7776521 0234678888889987643488999999999999998776644 11237888888855
Q ss_pred hCC-CCChhhHHHHHHHHH
Q 004119 138 RLP-WADPKIVKQLIDARM 155 (773)
Q Consensus 138 ~Lk-WAd~k~vK~~vd~~~ 155 (773)
..+ =|||+.|.+.+.+.+
T Consensus 523 ~tkGkAnp~~v~~iL~e~L 541 (544)
T PLN02751 523 ASKGKANPGLLNKILMEKL 541 (544)
T ss_pred HhCCCCCHHHHHHHHHHHh
Confidence 543 589999998887654
No 115
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=94.71 E-value=0.078 Score=58.90 Aligned_cols=92 Identities=23% Similarity=0.230 Sum_probs=57.7
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC---C---cccchHHHHHHHHHHHHHcCCCCCC--cCCC
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT---N---PEAEKKEYIDHIEEIVQWMGWEPFK--ITYT 322 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT---D---p~r~~~e~~~~I~edL~wLGi~pd~--~~~q 322 (773)
|.+=+ .|||.+||||.-.++.++..-...+..+++--|+. + ...+..++...+..++-.+|++|++ ++.|
T Consensus 5 v~sG~--~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~q 82 (333)
T PRK12282 5 ILTGD--RPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFIQ 82 (333)
T ss_pred EEEee--CCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEEC
Confidence 44444 45799999999999999966655555555533332 1 1123345556666777889999975 6789
Q ss_pred chhHHHHHHHHHHHHHcCCcccCCCCHHHH
Q 004119 323 SDYFQELYELAVELIRRGHAYVDHQTPEEI 352 (773)
Q Consensus 323 Sd~~~~~y~~a~~LI~~G~AY~C~cs~eel 352 (773)
|+..+ +.+++ ..+.|.++-.++
T Consensus 83 S~~~e-~~~l~-------~~l~~~~~~~~l 104 (333)
T PRK12282 83 SQIPE-LAELT-------MYYMNLVTVARL 104 (333)
T ss_pred CcchH-HHHHH-------HHHHhhchHHHH
Confidence 99744 33322 125666666555
No 116
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.
Probab=94.62 E-value=0.58 Score=55.98 Aligned_cols=140 Identities=22% Similarity=0.308 Sum_probs=92.2
Q ss_pred hhHHHHHHH-hcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh--------------ccCHHHHHHHH
Q 004119 9 KSEILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT--------------IKTPAQLEAAF 73 (773)
Q Consensus 9 ~~~~~~~f~-~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~--------------lks~~Ql~aA~ 73 (773)
+++..+.|. ..|||+.-|.-++.+. .+.-+++++...+. -++...+.|.+ | ++.++.+.+
T Consensus 448 p~~~~~r~~~~ygls~~~A~~l~~~~-~~~~fe~~~~~~~~---~~~~~an~l~~~~~~l~~~~~~~~~~-~~~~l~~l~ 522 (620)
T TIGR00134 448 PEEKKERIMREYGLSEDLASQLVKSN-YVDEFEALTEKFRV---DPTVIASLLAYTLRELRREGHDIDGL-ELRHLRDAI 522 (620)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhch-HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhCCCCcccC-CHHHHHHHH
Confidence 334455554 6899999998888875 56666666554332 12333333333 2 245555555
Q ss_pred HHHHhcC-C-------------CCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhC
Q 004119 74 SFFASTG-S-------------ENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRL 139 (773)
Q Consensus 74 ~yl~~~~-~-------------~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~L 139 (773)
+.+.+.. + .+-+.++.-++.|.. .+|.++|++.|.++|++|.+.+.+.+- ..+|.+||+|.+.+
T Consensus 523 ~~~~~g~is~~~~k~vl~~~~~~~~~~~~iiee~gL~-qlsdeel~~iV~evI~en~~~V~~~~~-k~~G~lmGqVMk~t 600 (620)
T TIGR00134 523 KLLEVGKIAKEGLREILKCMCDEPLAAEDAARKLKLK-LLAEEEIESIIQEIIEENLDMISERGE-GAMGPLMGQAMGRL 600 (620)
T ss_pred HHHHcCCCcHHHHHHHHHHHHhCCCCHHHHHHHcCCc-CCCHHHHHHHHHHHHHhChHhhhccCH-hHHHHHHHHHHHHh
Confidence 5544321 0 112456677888864 489999999999999999887766543 34899999987765
Q ss_pred CC-CChhhHHHHHHHHH
Q 004119 140 PW-ADPKIVKQLIDARM 155 (773)
Q Consensus 140 kW-Ad~k~vK~~vd~~~ 155 (773)
+= |||+.|.+.|.+.+
T Consensus 601 kGkAdp~~V~~lLke~L 617 (620)
T TIGR00134 601 RGKADGKVVNRILRKKL 617 (620)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 44 99999999988665
No 117
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=94.31 E-value=0.1 Score=65.14 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=46.0
Q ss_pred eeeeeeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHH
Q 004119 473 VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 548 (773)
Q Consensus 473 ~w~f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 548 (773)
...+|++..+|+|||||+|| ..+...+.++ |.+.++|.||+..|-...+..++.+.+.+.
T Consensus 565 v~~hG~vl~~G~KMSKS~GN---------------vVdp~eii~~-yGaDalRl~L~~~~~~~~D~~fs~~~v~~~ 624 (897)
T PRK12300 565 IVVNGFVLLEGKKMSKSKGN---------------VIPLRKAIEE-YGADVVRLYLTSSAELLQDADWREKEVESV 624 (897)
T ss_pred EEEcceEEECCccccCcCCC---------------CCCHHHHHHH-cChHHHHHHHHhCCCCCCCCccCHHHHHHH
Confidence 34468877799999999999 3567777776 999999999998766556656776665544
No 118
>PLN02886 aminoacyl-tRNA ligase
Probab=93.79 E-value=0.12 Score=58.46 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=58.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC----c--ccchHHHHHHHHHHHHHcCCCCCC--cCCC
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN----P--EAEKKEYIDHIEEIVQWMGWEPFK--ITYT 322 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTD----p--~r~~~e~~~~I~edL~wLGi~pd~--~~~q 322 (773)
|.+=| .|||.+||||.-.++-+|..-.. +..+++=|-|.- + ..+..++...+..++-.+|++|.+ ++.|
T Consensus 49 v~sGi--qPSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~Q 125 (389)
T PLN02886 49 VVSGV--QPTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACGIDPSKASVFVQ 125 (389)
T ss_pred EEEEE--CCCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHHHHHHHHHHHHHHHHHcCcCccceEEEEe
Confidence 44444 56799999999888888865544 555555566642 1 123344555567788889999985 7789
Q ss_pred chhHHHHHHHHHHHHHcCCcccCCCCHHHHH
Q 004119 323 SDYFQELYELAVELIRRGHAYVDHQTPEEIK 353 (773)
Q Consensus 323 Sd~~~~~y~~a~~LI~~G~AY~C~cs~eel~ 353 (773)
|+.. .+.+++-. +.|.++--+|.
T Consensus 126 S~v~-e~~eL~wi-------l~~~t~~g~L~ 148 (389)
T PLN02886 126 SHVP-AHAELMWL-------LSCSTPIGWLN 148 (389)
T ss_pred CCCc-hhHHHHHH-------HHhhCcHHHHH
Confidence 9853 34444322 45666665554
No 119
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated
Probab=93.68 E-value=1.2 Score=53.44 Aligned_cols=145 Identities=22% Similarity=0.342 Sum_probs=93.3
Q ss_pred hhHHHHHHH-hcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh-----------c--cCHHHHHHHHH
Q 004119 9 KSEILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT-----------I--KTPAQLEAAFS 74 (773)
Q Consensus 9 ~~~~~~~f~-~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~-----------l--ks~~Ql~aA~~ 74 (773)
+++..+.|. ..|||++-|.-++.++. +.-+.+++.. .. -++..++.|.+ + -++.+|.+.++
T Consensus 455 p~~~~~r~~~~ygls~~~a~~L~~~~~-~~~f~~~~~~-~~---~~~~~anwl~~~~~~l~~~~~~~~~i~~~~l~~l~~ 529 (630)
T PRK04028 455 PEEKVERLIKEYGLSEELAEQLAYSER-LDLFEELVKK-GV---DPTLIASTLENTLKELRREGVDVENITDEHIEEVFK 529 (630)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCch-HHHHHHHHHh-CC---CHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHHHH
Confidence 344555554 48999999977766654 5555554432 11 12333333333 1 13455555555
Q ss_pred HHHhcC-C--------------CCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhC
Q 004119 75 FFASTG-S--------------ENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRL 139 (773)
Q Consensus 75 yl~~~~-~--------------~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~L 139 (773)
.+.+.. + ..-+.++.-++.|.. .+|.++|+++|+++|++|...+.+.+ ...+|.+||+|.+..
T Consensus 530 ~~~~~~is~~~ak~v~~~~~~~~~~~~~~IIee~gl~-qiSD~eL~~iV~evIaenpk~V~~gk-~K~~G~lmGqVMk~t 607 (630)
T PRK04028 530 LVSEGKIAKEAIEEILKELAENPGKSAEEAAEELGLK-GLSEEEVEKIIDEIVEENIDFVKEKG-MGAFGPLMGEVMAEL 607 (630)
T ss_pred HHHcCCccHHHHHHHHHHHHhcCCCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHhHhccC-HhHHHHHHHHHHHHh
Confidence 444321 0 134567777788865 47999999999999999877665533 445899999997764
Q ss_pred C-CCChhhHHHHHHHHHHHhcC
Q 004119 140 P-WADPKIVKQLIDARMYELLG 160 (773)
Q Consensus 140 k-WAd~k~vK~~vd~~~~~llg 160 (773)
+ =|||+.|.+.|.+.+.+.+|
T Consensus 608 kGkAdp~~V~~llke~L~~~~~ 629 (630)
T PRK04028 608 RGKADGKLVSEILREKLKEILN 629 (630)
T ss_pred cCCCCHHHHHHHHHHHHHHHhc
Confidence 4 49999999999988766654
No 120
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.67 E-value=0.12 Score=58.66 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=48.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC----c---ccchHHHHHHHHHHHHHcCCCCCC--cCCCchh
Q 004119 258 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN----P---EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDY 325 (773)
Q Consensus 258 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTD----p---~r~~~e~~~~I~edL~wLGi~pd~--~~~qSd~ 325 (773)
.|||.+||||.-.++-+|. ..+.++.+++=|-|.- + ..+..+....+..++-.+|++|++ ++.||+.
T Consensus 10 qPSG~~HLGnylG~ik~wv-~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v 85 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWV-KLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKV 85 (398)
T ss_pred CCCCcchHHHHHHHHHHHH-HHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCc
Confidence 5789999999999888776 3455677666666642 2 123445556677888899999975 7789986
No 121
>PRK05477 gatB aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated
Probab=93.42 E-value=1.3 Score=51.44 Aligned_cols=140 Identities=24% Similarity=0.347 Sum_probs=95.2
Q ss_pred hHHHHHHH-hcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh------------c----cCHHHHHHH
Q 004119 10 SEILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT------------I----KTPAQLEAA 72 (773)
Q Consensus 10 ~~~~~~f~-~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~------------l----ks~~Ql~aA 72 (773)
++..+.|. ..||++.-|.-++.++.++.-+.+++.. +. .++..++.|.+ + -++.+|.+.
T Consensus 299 ~~~~~rl~~~ygls~~~a~~L~~~~~~~~~fe~~~~~-~~---~~k~~anwl~~el~~~l~~~~~~~~~~~i~~~~l~~L 374 (474)
T PRK05477 299 DAKRARFVEEYGLSEYDARVLTSDKELADYFEAVVAA-GA---DAKLAANWLMGELLGLLNEEGIEIEESPITPEQLAEL 374 (474)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHc-CC---CHHHHHHHHHHHHHHHHHHCCCChhhcCCCHHHHHHH
Confidence 34455565 5899999999999998888888877653 21 23444444444 1 245666666
Q ss_pred HHHHHhcC-C-------------CCCCHHHHHHHcCCCeeeCHH-HHHHHHHHHHHhhHhHHHhhc--cccchhhhHHHH
Q 004119 73 FSFFASTG-S-------------ENFEVDEFEEACGVGVEVSSE-DIELTVNEVFEENKNTILELR--YRTNVGDLFAHV 135 (773)
Q Consensus 73 ~~yl~~~~-~-------------~~~d~~~fe~~cGVGv~vT~E-~I~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~~v 135 (773)
++.+.+.. + ...+.++.-++.|.+. +|.+ +|++.|+++|++|.+.+.+-| -..-+|-|||+|
T Consensus 375 i~lv~~g~Is~~~ak~vl~~~~~~~~~~~~ii~~~gl~~-isd~~~l~~iv~evi~~np~~v~~~~~Gk~~~~~~lvG~v 453 (474)
T PRK05477 375 IKLIDDGTISGKIAKEVFEEMLETGGDPDEIVEEKGLKQ-ISDEGALEAIVDEVLAANPKAVEDYKAGKEKALGFLVGQV 453 (474)
T ss_pred HHHHHcCCccHHHHHHHHHHHHhcCCCHHHHHHHcCCcc-cCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHHH
Confidence 66554431 0 1345777888889875 5655 999999999999998776642 223378888887
Q ss_pred Hhh-CCCCChhhHHHHHHHH
Q 004119 136 RKR-LPWADPKIVKQLIDAR 154 (773)
Q Consensus 136 r~~-LkWAd~k~vK~~vd~~ 154 (773)
-+. =--|||+.|.+.+.+.
T Consensus 454 Mk~t~GkAdp~~v~~ll~e~ 473 (474)
T PRK05477 454 MKATKGKANPKLVNELLKEK 473 (474)
T ss_pred HHHhcCCCCHHHHHHHHHHh
Confidence 444 4569999999888653
No 122
>PLN02943 aminoacyl-tRNA ligase
Probab=93.04 E-value=0.17 Score=63.62 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=49.7
Q ss_pred ceeeeeec-cCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHH
Q 004119 472 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 550 (773)
Q Consensus 472 ~~w~f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r 550 (773)
.+|-|+.+ +.+|+|||||+|| ..+...+.++ |.|+++|.||+..+. ..+..++++.|.+ ++
T Consensus 569 ~v~~hg~v~~~~G~KMSKS~GN---------------~i~p~~~i~~-ygaDalR~~l~~~~~-~~d~~fs~~~l~~-~~ 630 (958)
T PLN02943 569 YVYLHGLIRDSQGRKMSKTLGN---------------VIDPLDTIKE-FGTDALRFTLALGTA-GQDLNLSTERLTS-NK 630 (958)
T ss_pred eEEEeccEECCCCCcccCcCCC---------------CCCHHHHHHh-cCChHHHHHHHhCCC-CCCccccHHHHHH-HH
Confidence 47778876 5799999999998 3577777776 999999999988665 4555688777765 45
Q ss_pred Hhhh
Q 004119 551 EELN 554 (773)
Q Consensus 551 ~~~~ 554 (773)
.+++
T Consensus 631 ~~~~ 634 (958)
T PLN02943 631 AFTN 634 (958)
T ss_pred HHHH
Confidence 5544
No 123
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=92.73 E-value=0.36 Score=55.24 Aligned_cols=87 Identities=18% Similarity=0.116 Sum_probs=56.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHH-cCCEEEEEeecC-------CcccchHHHHHHHHHHHHHcCCCCCC--cCCCchhHH
Q 004119 258 EPNGYLHIGHAKAMFVDFGLAKE-RGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 327 (773)
Q Consensus 258 sPtG~LHIGhaRaal~n~~~Ar~-~~G~~iLRidDT-------Dp~r~~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~ 327 (773)
.|||.|||||.-.++-||.-... .+..+++=|-|. ||++ ..+....+..++-.+|++|++ +++||+.-
T Consensus 10 qPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~-lr~~~~e~aa~~LA~GlDPek~~if~QSdvp- 87 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPAR-IQRSTLEIAATWLAAGLDPERVTFYRQSDIP- 87 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHH-HHHHHHHHHHHHHHhCCCccceEEEECCcch-
Confidence 68999999999999889887753 455666656554 3332 233344466677778999985 77899853
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHH
Q 004119 328 ELYELAVELIRRGHAYVDHQTPEEIK 353 (773)
Q Consensus 328 ~~y~~a~~LI~~G~AY~C~cs~eel~ 353 (773)
.+.+++-.| .|.++.-+|.
T Consensus 88 eh~EL~wiL-------~~it~~g~L~ 106 (431)
T PRK12284 88 EIPELTWLL-------TCVAGKGLLN 106 (431)
T ss_pred hHHHHHHHH-------HhhhhHHHHH
Confidence 344544333 3555544554
No 124
>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit. The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both.
Probab=92.66 E-value=2.3 Score=49.66 Aligned_cols=139 Identities=16% Similarity=0.195 Sum_probs=94.1
Q ss_pred HHHHH-HhcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh----------------ccCHHHHHHHHH
Q 004119 12 ILELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT----------------IKTPAQLEAAFS 74 (773)
Q Consensus 12 ~~~~f-~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~----------------lks~~Ql~aA~~ 74 (773)
..+.| ...||++.-|.-++.++.++.-+++++.... -++...+-|.+ .-++.+|.+-++
T Consensus 304 ~~~R~~~~ygls~~~a~~L~~~~~~~~~fe~~~~~~~----~~k~~anwl~~el~~~l~~~~~~i~~~~l~p~~l~~Li~ 379 (478)
T TIGR00133 304 KRIRLKKEYGLSEQDAKVLTSDLTLADYFEEVVKLIG----DPKLAANWICIELLGVLNKLQISLAECGLKPSDLAELIK 379 (478)
T ss_pred HHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHCCCCHhhcCCCHHHHHHHHH
Confidence 33444 5789999999999999988888888765421 13444444443 134566666666
Q ss_pred HHHhcC-C-------------CCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHh--hccccchhhhHHHHHhh
Q 004119 75 FFASTG-S-------------ENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILE--LRYRTNVGDLFAHVRKR 138 (773)
Q Consensus 75 yl~~~~-~-------------~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~--~ry~~n~g~ll~~vr~~ 138 (773)
.+.+.. + ..-+.+++-++-|.+.+-..++|++.|.++|++|.+++.+ +|-..-+|-|+|+|=+.
T Consensus 380 lv~~g~Is~~~ak~vl~~~~~~~~~~~~ii~~~gl~~isd~~~l~~iv~evl~~np~~v~~~k~Gk~k~~~~lvGqvMk~ 459 (478)
T TIGR00133 380 LIKEGKISGKSAKQLIEEMLENGGDPSKLIEELGLEQISDEKELIKIIEEVIKENPKEVEKYLSGKERALKFLVGQVMKR 459 (478)
T ss_pred HHHcCCCcHHHHHHHHHHHHhcCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 654431 0 1345777888889876434448999999999999887665 12223477788887443
Q ss_pred -CCCCChhhHHHHHHHH
Q 004119 139 -LPWADPKIVKQLIDAR 154 (773)
Q Consensus 139 -LkWAd~k~vK~~vd~~ 154 (773)
=-=|||+.|.+.+.+.
T Consensus 460 t~GkA~p~~v~~~l~~~ 476 (478)
T TIGR00133 460 TRGRANPQLVNEILKEM 476 (478)
T ss_pred hCCCCCHHHHHHHHHHH
Confidence 4569999999888654
No 125
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=92.27 E-value=0.22 Score=62.77 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=50.0
Q ss_pred eeeeeec-cCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHH
Q 004119 473 VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 551 (773)
Q Consensus 473 ~w~f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~ 551 (773)
++.||++ ..+|+|||||+|| ..+...+.++ |.+.|+|.|+++.+....+..++++.+-+.++.
T Consensus 579 v~~hG~Vld~~G~KMSKSlGN---------------vIdP~dli~~-yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~ 642 (975)
T PRK06039 579 VLVHGHVLDEDGQKMSKSLGN---------------YVDPFEVFDK-YGADALRWYLLSSSAPWEDLRFSEDGVREVVRK 642 (975)
T ss_pred EEEeeeEECCCCCCcCCCCCC---------------cCCHHHHHHH-hChHHHHHHHHhCCCCCCCceechhHHHHHHHH
Confidence 4556664 4599999999998 3567777776 999999999999887566667888774455555
Q ss_pred hhhc
Q 004119 552 ELNK 555 (773)
Q Consensus 552 ~~~~ 555 (773)
++++
T Consensus 643 ~l~k 646 (975)
T PRK06039 643 FLLT 646 (975)
T ss_pred HHHH
Confidence 5543
No 126
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=92.11 E-value=2.2 Score=52.43 Aligned_cols=139 Identities=18% Similarity=0.305 Sum_probs=92.5
Q ss_pred HHHHH-hcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh--------------ccCHHHHHHHHHHHH
Q 004119 13 LELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT--------------IKTPAQLEAAFSFFA 77 (773)
Q Consensus 13 ~~~f~-~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~--------------lks~~Ql~aA~~yl~ 77 (773)
.+.|. ..||++.-|.-++.++.++.-+++++.... -++...+.|.+ --+..+|.+.++.|.
T Consensus 600 ~~Rlv~eyGLs~~dA~~L~~d~~la~yFE~~v~~~~----~pk~aANWl~~El~~~Lne~~i~~~~l~pe~LaeLv~lV~ 675 (771)
T PRK14703 600 FDRYLSELGLNEEDARTLARDPALAAFFEAALAAGK----SPVQLANWVVNDLAGLLRDRELAALPFTPAALARLVALVD 675 (771)
T ss_pred HHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHhcCCCccCCCCHHHHHHHHHHHH
Confidence 44454 589999999999999988888888765421 12334444433 113345555555443
Q ss_pred hcC--------------CCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhc--cccchhhhHHHHHhhC-C
Q 004119 78 STG--------------SENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLFAHVRKRL-P 140 (773)
Q Consensus 78 ~~~--------------~~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~~vr~~L-k 140 (773)
+.. ...-+.++.-++.|.+.+-..++|+++|+++|++|.+.+.+-| -..-+|-|||+|=+.. =
T Consensus 676 ~g~IS~~~AK~VL~~m~~~~~~p~~IIee~GL~qisDe~~Le~iV~eVI~~NP~~Ve~yk~GK~kalgfLVGqVMK~tkG 755 (771)
T PRK14703 676 AGRISTRIAKDVLAELAASGGDPEAIVEAKGLEQVSDAGALEPIVEEVLAAHPDKVAAYRAGKTKLLGFFVGQVMRETGG 755 (771)
T ss_pred cCCccHHHHHHHHHHHHhcCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHhcchHHHHHHHHHHHHHHhCC
Confidence 321 0123567788999998765558899999999999999877644 1233677777775443 3
Q ss_pred CCChhhHHHHHHHHH
Q 004119 141 WADPKIVKQLIDARM 155 (773)
Q Consensus 141 WAd~k~vK~~vd~~~ 155 (773)
=|||+.|.+.+.+.+
T Consensus 756 KAdP~~V~elLke~L 770 (771)
T PRK14703 756 KANPQQVRELLQKKL 770 (771)
T ss_pred CCCHHHHHHHHHHHh
Confidence 489999998887653
No 127
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=91.48 E-value=0.48 Score=59.19 Aligned_cols=67 Identities=19% Similarity=0.141 Sum_probs=50.8
Q ss_pred ceeeeeecc-CCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHH
Q 004119 472 YVWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 550 (773)
Q Consensus 472 ~~w~f~~Ln-~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r 550 (773)
.++.||++. .+|+|||||+|| ..+...+.++ |.++|+|.|++..+-...+..+++..+... +
T Consensus 506 ~v~~hG~v~d~~G~KMSKSlGN---------------vIdP~dvi~~-yGaDalR~~ll~~~~~~~Di~fs~~~l~~~-~ 568 (874)
T PRK05729 506 DVYIHGLVRDEQGRKMSKSKGN---------------VIDPLDLIDK-YGADALRFTLAALASPGRDIRFDEERVEGY-R 568 (874)
T ss_pred heEEeeeEECCCCCCcccCCCC---------------CCCHHHHHHH-hChHHHHHHHHhCCCCCCCceeCHHHHHHH-H
Confidence 567788765 799999999998 3566677766 889999999998876666667888877654 3
Q ss_pred Hhhhc
Q 004119 551 EELNK 555 (773)
Q Consensus 551 ~~~~~ 555 (773)
.|.++
T Consensus 569 ~~~nk 573 (874)
T PRK05729 569 NFANK 573 (874)
T ss_pred HHHHH
Confidence 44444
No 128
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=91.22 E-value=0.29 Score=61.23 Aligned_cols=80 Identities=20% Similarity=0.205 Sum_probs=54.8
Q ss_pred CchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----cc------------------------------------cchHH
Q 004119 263 LHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----PE------------------------------------AEKKE 300 (773)
Q Consensus 263 LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----p~------------------------------------r~~~e 300 (773)
|||||+++.++-+.+||. ..|.-+|+.=..| |. .-...
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 799999999999999994 4677676632222 11 01123
Q ss_pred HHHHHHHHHHHcCCC--CCCcCCCchhHHHHHH----HHHHHHHcCCccc
Q 004119 301 YIDHIEEIVQWMGWE--PFKITYTSDYFQELYE----LAVELIRRGHAYV 344 (773)
Q Consensus 301 ~~~~I~edL~wLGi~--pd~~~~qSd~~~~~y~----~a~~LI~~G~AY~ 344 (773)
|.+.+.++++.||+. |+..+.+.+ ..|++ ...+|.++|+.|.
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~d--p~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTD--PEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCC--hhHHHHHHHHHHHHHHCCCEec
Confidence 457789999999985 666665555 23333 3458999999985
No 129
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=90.21 E-value=1.3 Score=53.64 Aligned_cols=90 Identities=16% Similarity=0.074 Sum_probs=52.0
Q ss_pred cHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC-----cc----cchHHHHHHHH
Q 004119 236 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN-----PE----AEKKEYIDHIE 306 (773)
Q Consensus 236 ~~~~~~~h~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTD-----p~----r~~~e~~~~I~ 306 (773)
|.+-|++-++. +..++.=..=.|||.|||||..-..++.....+.|..+++=|-|.- +. +........+.
T Consensus 19 ~~eeL~~ll~~-~~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~ 97 (682)
T PTZ00348 19 QESELRNLIEK-KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLI 97 (682)
T ss_pred CHHHHHHHHhc-CCCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHH
Confidence 34444444432 2233333345688999999942213444444466777766666642 21 11222234567
Q ss_pred HHHHHcCCCCCC--cCCCchhH
Q 004119 307 EIVQWMGWEPFK--ITYTSDYF 326 (773)
Q Consensus 307 edL~wLGi~pd~--~~~qSd~~ 326 (773)
.++..+|++|++ +.+||+.+
T Consensus 98 ~~~lA~GlDpeK~~~~~qSd~i 119 (682)
T PTZ00348 98 EVWKAAGMDMDKVLFLWSSEEI 119 (682)
T ss_pred HHHHHcCCCccceEEEECcHhh
Confidence 788899999985 67899844
No 130
>PLN02959 aminoacyl-tRNA ligase
Probab=89.91 E-value=0.9 Score=58.02 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=44.3
Q ss_pred eeeeeeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHH
Q 004119 473 VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 548 (773)
Q Consensus 473 ~w~f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 548 (773)
+..+|++..+|+|||||+|| ..++..+.++ |.+.|+|-||+..|-...+..+....+.+.
T Consensus 706 v~v~G~V~~~G~KMSKSkGN---------------vI~p~diI~k-yGADalRl~la~~~~~~~D~nF~~k~~n~~ 765 (1084)
T PLN02959 706 FRCNGHLMLNSEKMSKSTGN---------------FLTLRQAIEE-FSADATRFALADAGDGVDDANFVFETANAA 765 (1084)
T ss_pred EEEccEEecCCcCccccCCC---------------cCCHHHHHHH-hCchHHHHHHhhcCCccCCCCccHHHHHHH
Confidence 34467778999999999999 3577777775 999999999988765545555666544333
No 131
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=89.67 E-value=0.77 Score=58.47 Aligned_cols=66 Identities=18% Similarity=0.140 Sum_probs=47.8
Q ss_pred eeeeeeccC-CCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHH
Q 004119 473 VWEYSRLNV-SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 551 (773)
Q Consensus 473 ~w~f~~Ln~-~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~ 551 (773)
.+-||++.. +|+|||||+||. .+...+.++ |.++++|.||+..+-...+..++++.++.. +.
T Consensus 525 V~~hG~v~d~~G~KMSKSkGNv---------------IdP~dvIe~-yGaDalR~~L~~~~~~g~D~~fs~~~l~~~-~~ 587 (1052)
T PRK14900 525 VYLHPMVRDEKGQKMSKTKGNV---------------IDPLVITEQ-YGADALRFTLAALTAQGRDIKLAKERIEGY-RA 587 (1052)
T ss_pred eEecccEECCCCCCccCCCCCC---------------CCHHHHHHH-hCcHHHHHHHHhcCCCCCCCcccHHHHHHH-HH
Confidence 555677655 999999999983 455666665 999999999998765556667887777543 34
Q ss_pred hhhc
Q 004119 552 ELNK 555 (773)
Q Consensus 552 ~~~~ 555 (773)
|.+.
T Consensus 588 f~nk 591 (1052)
T PRK14900 588 FANK 591 (1052)
T ss_pred HHHH
Confidence 4443
No 132
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=89.57 E-value=0.52 Score=58.75 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=47.9
Q ss_pred eeeeeec-cCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHH
Q 004119 473 VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 551 (773)
Q Consensus 473 ~w~f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~ 551 (773)
++-||++ ..+|+|||||+|| ..+...+.++ |.++|+|.|++.. -...+..++++.+....+.
T Consensus 598 v~~hG~vl~~~G~KMSKSkGN---------------vI~p~d~i~~-yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~ 660 (861)
T TIGR00392 598 VITHGFTLDEKGRKMSKSLGN---------------VVDPLKVINK-YGADILRLYVASS-DPWEDLRFSDEILKQVVEK 660 (861)
T ss_pred hEecceEECCCCCCcCCCCCC---------------CCCHHHHHHH-cCHHHHHHHHHhC-CCCCCceECHHHHHHHHHH
Confidence 4446665 4589999999998 3577777776 9999999999887 3344557888888776554
Q ss_pred hhh
Q 004119 552 ELN 554 (773)
Q Consensus 552 ~~~ 554 (773)
+.+
T Consensus 661 ~~n 663 (861)
T TIGR00392 661 YRK 663 (861)
T ss_pred HHH
Confidence 443
No 133
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.08 E-value=6.4 Score=45.03 Aligned_cols=103 Identities=21% Similarity=0.251 Sum_probs=55.3
Q ss_pred CcHHHHHHhhhhcCCeEEEEeCCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeec-C----Ccc--------cchHH
Q 004119 235 NTKEVLDKHLEVTGGNVLTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDD-T----NPE--------AEKKE 300 (773)
Q Consensus 235 ~~~~~~~~h~~~~~g~v~tRFaPsPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidD-T----Dp~--------r~~~e 300 (773)
.+.+.+.+.++.. .++.=..=.||| .|||||+-.+..=-.|-. .|=+-++=+-| | ||. ...+.
T Consensus 19 ~~ee~l~~ll~~~--~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~-aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~ 95 (401)
T COG0162 19 TDEEELRKLLEEG--PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQD-AGHKPIVLIGDATAMIGDPSGKSEERKLLTRET 95 (401)
T ss_pred CcHHHHHHHHhcC--CceEEEeeCCCCCccchhhHHHHHHHHHHHH-CCCeEEEEecccceecCCCCCCHHHHhhccHHH
Confidence 4577777776654 444444557899 999999988754222222 22222222222 2 342 12334
Q ss_pred HHHHHHHHHHHcCCCCC---CcCCCchhHHHHHHHHHHHHHcCC
Q 004119 301 YIDHIEEIVQWMGWEPF---KITYTSDYFQELYELAVELIRRGH 341 (773)
Q Consensus 301 ~~~~I~edL~wLGi~pd---~~~~qSd~~~~~y~~a~~LI~~G~ 341 (773)
+.+.+....+.||...+ ++.+.|+.+..+ .|..-|..-|.
T Consensus 96 v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~-~y~~~l~~~g~ 138 (401)
T COG0162 96 VLENAETIKKQLGKFLDNKAEFVNNSDWLKKL-NYLDFLRDVGK 138 (401)
T ss_pred HHHHHHHHHHHhcccCCcceEEEechHHhCcC-CHHHHHHHHHh
Confidence 44555666677776555 456677764422 24444444444
No 134
>PLN02843 isoleucyl-tRNA synthetase
Probab=86.98 E-value=1.7 Score=54.90 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=44.1
Q ss_pred Cceeeeeec-cCCCceecccccccccccCccCCCCCcccccHHHHHHc--------CCCHHHHHHHHHHhCCCCCCcccc
Q 004119 471 PYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR--------GVTSTSINAFVQGIGISRSDSLIR 541 (773)
Q Consensus 471 P~~w~f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrr--------G~~PeAI~~fl~~lG~s~~~~~~~ 541 (773)
-.+|.||++ +.+|+|||||+|| ..+...+.+. -|.++++|.|+++..++. +..++
T Consensus 596 k~v~~HG~vld~~G~KMSKSlGN---------------vI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~~~~~-d~~~s 659 (974)
T PLN02843 596 KSVLTHGFVLDEKGFKMSKSLGN---------------VVDPRLVIEGGKNQKQEPAYGADVLRLWVASVDYTG-DVLIG 659 (974)
T ss_pred ceEEEeccEECCCCCCcCCCCCC---------------cCCHHHHHhhccccccccccChHHHHHHHHhcccCC-CceeC
Confidence 357778864 6689999999998 3566677763 388999999999877654 33466
Q ss_pred HhHHH
Q 004119 542 LDRLE 546 (773)
Q Consensus 542 ~~~Le 546 (773)
...|.
T Consensus 660 ~~~l~ 664 (974)
T PLN02843 660 PQILK 664 (974)
T ss_pred HHHHH
Confidence 55554
No 135
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=86.04 E-value=1.9 Score=54.60 Aligned_cols=59 Identities=17% Similarity=0.091 Sum_probs=42.3
Q ss_pred ceeeeeecc-CCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHH
Q 004119 472 YVWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 547 (773)
Q Consensus 472 ~~w~f~~Ln-~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~ 547 (773)
.++-||++. .+|+|||||+||. .....+.+. |.++++|.|++...++ .+..++.+.|.+
T Consensus 616 ~V~~HG~vld~~G~KMSKSlGNv---------------IdP~~ii~~-yGaD~lRl~lls~~~~-~D~~fs~~~l~~ 675 (961)
T PRK13804 616 AVLTHGFTLDEKGEKMSKSLGNT---------------VSPQDVIKQ-SGADILRLWVASVDYS-DDQRIGKEILKQ 675 (961)
T ss_pred hEEEeccEECCCCCCccCCCCCc---------------CCHHHHHHh-cCHHHHHHHHHhCCCC-CCcccCHHHHHH
Confidence 567788754 5999999999983 455566654 9999999999975543 333566655443
No 136
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.75 E-value=1.4 Score=55.00 Aligned_cols=90 Identities=23% Similarity=0.272 Sum_probs=63.6
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHHc--CCEEEEEeecCC-------------------------cc----c---chHHH
Q 004119 256 PPEPNGYLHIGHAKAMFVDFGLAKER--GGYCYLRYDDTN-------------------------PE----A---EKKEY 301 (773)
Q Consensus 256 aPsPtG~LHIGhaRaal~n~~~Ar~~--~G~~iLRidDTD-------------------------p~----r---~~~e~ 301 (773)
||..||.+|||||-+=++-+.+.|.+ .|..+-|.-.=| .+ . ...++
T Consensus 57 PPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~ 136 (933)
T COG0060 57 PPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQ 136 (933)
T ss_pred CCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999988888742 344333332222 11 1 13467
Q ss_pred HHHHHHHHHHcCC--CCCCcC--CCchhHHHHHHHHHHHHHcCCcccC
Q 004119 302 IDHIEEIVQWMGW--EPFKIT--YTSDYFQELYELAVELIRRGHAYVD 345 (773)
Q Consensus 302 ~~~I~edL~wLGi--~pd~~~--~qSd~~~~~y~~a~~LI~~G~AY~C 345 (773)
++...+++..||+ +|+.+| ..-+|.+.......+|.++|+.|.-
T Consensus 137 v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg 184 (933)
T COG0060 137 VDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRG 184 (933)
T ss_pred HHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecC
Confidence 8888889999998 466654 4445666666777899999999964
No 137
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=85.54 E-value=1.9 Score=54.26 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=40.8
Q ss_pred eeeeeec-cCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHH
Q 004119 473 VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 547 (773)
Q Consensus 473 ~w~f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~ 547 (773)
.+.||++ ..+|+|||||+||. .+...+.++ |.++++|.|++...+ ..+..++.+.|.+
T Consensus 579 vl~HG~vld~~G~KMSKSlGNv---------------IdP~~ii~~-yGaDalR~~ll~~~~-~~D~~~s~~~l~~ 637 (912)
T PRK05743 579 VLTHGFTVDGKGRKMSKSLGNV---------------IDPQDVIKK-YGADILRLWVASTDY-SGDVRISDEILKQ 637 (912)
T ss_pred eEEeeeEECCCCCCCCCCCCCc---------------CCHHHHHHh-cChHHHHHHHHhcCC-CCCeeecHHHHHH
Confidence 3346764 56999999999993 456666665 999999999987433 3444566665544
No 138
>PLN02882 aminoacyl-tRNA ligase
Probab=85.47 E-value=1.2 Score=57.24 Aligned_cols=68 Identities=7% Similarity=-0.010 Sum_probs=43.9
Q ss_pred CCCCCce-eeeeeccC-CCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCC-ccccHh
Q 004119 467 GLYQPYV-WEYSRLNV-SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD-SLIRLD 543 (773)
Q Consensus 467 g~~~P~~-w~f~~Ln~-~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~-~~~~~~ 543 (773)
|..+|.. ..||++.. +|+|||||+||. .....+.++ |.++|+|.|++.......+ ..++.+
T Consensus 594 ~~~pfk~VivhG~vlde~G~KMSKSlGNv---------------IdP~evi~~-YGADaLR~~Ll~s~~~~~~d~~fs~~ 657 (1159)
T PLN02882 594 DKPAFKNLICNGLVLAEDGKKMSKSLKNY---------------PDPNEVIDK-YGADALRLYLINSPVVRAEPLRFKEE 657 (1159)
T ss_pred CCCCcceeEEccEEECCCCCCcccCCCCC---------------CCHHHHHHH-hCcHHHHHHHHhCCcccCcCcccCHH
Confidence 4444432 23566544 899999999983 344566654 8899999999876654333 346555
Q ss_pred HHHHHHH
Q 004119 544 RLEYHIR 550 (773)
Q Consensus 544 ~Le~~~r 550 (773)
.+.+.++
T Consensus 658 ~v~~~~~ 664 (1159)
T PLN02882 658 GVFGVVK 664 (1159)
T ss_pred HHHHHHH
Confidence 5554433
No 139
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=85.37 E-value=3.9 Score=46.33 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=49.0
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-----c------chH
Q 004119 237 KEVLDKHLEVTGGNVLTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------EKK 299 (773)
Q Consensus 237 ~~~~~~h~~~~~g~v~tRFaPsPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-----r------~~~ 299 (773)
.+.+.++++. .-.+.+=| .||| .|||||+-++. +...-...|...++=|-|- ||. | +..
T Consensus 20 ~~~l~~ll~~-~~~vy~G~--dPTg~~lHlGh~v~l~-~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~ 95 (377)
T TIGR00234 20 EEELLKLLER-KIKLYVGF--DPTAPSLHLGHLVPLL-KLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQ 95 (377)
T ss_pred HHHHHHHhcC-CCEEEEee--CCCCCCccHHHHHHHH-HHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHH
Confidence 5677777765 33343433 6789 89999998754 3333334454444445553 331 1 123
Q ss_pred HHHHHHHHHHHHcCCCCC--CcCCCchhHH
Q 004119 300 EYIDHIEEIVQWMGWEPF--KITYTSDYFQ 327 (773)
Q Consensus 300 e~~~~I~edL~wLGi~pd--~~~~qSd~~~ 327 (773)
++.+.|.. .-..|++|+ ++.++|+.+.
T Consensus 96 ~n~~~i~~-~la~gld~~k~~iv~ns~w~~ 124 (377)
T TIGR00234 96 ENAENIKK-QIARFLDFEKAKFVNNSEWLL 124 (377)
T ss_pred HHHHHHHH-HHHHhCChhheEEEECchhcC
Confidence 34444433 335688875 3677888654
No 140
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=85.17 E-value=1.8 Score=55.85 Aligned_cols=64 Identities=9% Similarity=0.030 Sum_probs=44.3
Q ss_pred eeeeec-cCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCC-CCCccccHhHHHHHHHH
Q 004119 474 WEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS-RSDSLIRLDRLEYHIRE 551 (773)
Q Consensus 474 w~f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s-~~~~~~~~~~Le~~~r~ 551 (773)
.-||++ ..+|+|||||+||. ..-..+.++ |.++|+|.|+++.+.. ..+..++...+.+..+.
T Consensus 708 lvHG~Vld~dG~KMSKSlGNv---------------IDP~evI~k-YGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~ 771 (1205)
T PTZ00427 708 ICNGLVLASDGKKMSKRLKNY---------------PDPLYILDK-YGADSLRLYLINSVAVRAENLKFQEKGVNEVVKS 771 (1205)
T ss_pred EEccEEEcCCCCCcccCCCCC---------------CCHHHHHHh-cCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHH
Confidence 345664 56999999999983 233344543 8899999999876543 34446777777766666
Q ss_pred hh
Q 004119 552 EL 553 (773)
Q Consensus 552 ~~ 553 (773)
|+
T Consensus 772 ~l 773 (1205)
T PTZ00427 772 FI 773 (1205)
T ss_pred HH
Confidence 64
No 141
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.01 E-value=3.6 Score=51.02 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=48.2
Q ss_pred HhCCCCCceeee--ee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCcccc
Q 004119 465 ALGLYQPYVWEY--SR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 541 (773)
Q Consensus 465 aLg~~~P~~w~f--~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~ 541 (773)
+|.-..|...-| |. +..+|+|||||+||. ....++.++ |-..|+|.+++.++....+..++
T Consensus 502 ~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNv---------------IDP~d~I~~-yGaDAlRf~la~~~~~G~Di~~~ 565 (877)
T COG0525 502 HLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNV---------------IDPLDVIDK-YGADALRFTLASLASPGRDINFD 565 (877)
T ss_pred HhcCCCCccEEEEeeeEEcCCCCCCcccCCCc---------------CCHHHHHHH-hChHHHHHHHHhccCCCcccCcC
Confidence 444456754444 43 478999999999983 233455555 88999999999887766777788
Q ss_pred HhHHHH
Q 004119 542 LDRLEY 547 (773)
Q Consensus 542 ~~~Le~ 547 (773)
+..++.
T Consensus 566 ~~~~~~ 571 (877)
T COG0525 566 EKRVEG 571 (877)
T ss_pred HHHHHH
Confidence 877763
No 142
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=82.91 E-value=2.7 Score=50.43 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=32.2
Q ss_pred ceeeeee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCC
Q 004119 472 YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS 534 (773)
Q Consensus 472 ~~w~f~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s 534 (773)
....+|. +..+|+|||||+|| ..+...+.++ |..+++|-|++..+-.
T Consensus 547 ~v~~hG~vld~~G~KMSKS~GN---------------vi~p~~ii~~-yGaD~lRl~~~~~~~~ 594 (601)
T PF00133_consen 547 KVITHGFVLDEDGRKMSKSKGN---------------VIDPEDIIEK-YGADALRLWLASSADP 594 (601)
T ss_dssp EEEEE--EEETTSSB-BTTTTB-----------------BHHHHHHH-T-HHHHHHHHHHHS-T
T ss_pred eeeecccccccceeecccCCCc---------------ccCHHHHHHH-hCcHHHHHHHHhcCCc
Confidence 3444666 46799999999999 4678888887 9999999999865543
No 143
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=81.53 E-value=9.2 Score=37.33 Aligned_cols=114 Identities=20% Similarity=0.285 Sum_probs=68.8
Q ss_pred HHHHHHHHcccc-cc---cccchhchhhh----ccCHHHHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHH
Q 004119 38 NLTAVIHEAAVT-DG---CERRIGNLLYT----IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVN 109 (773)
Q Consensus 38 ~L~~ii~~a~~~-~~---~~k~~g~LL~~----lks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cGVGv~vT~E~I~~~V~ 109 (773)
.|...++..+.. .. .+..-+.||.. -=|..+....+..+-++ .-+.++.-+..|.+..-++++|++.|.
T Consensus 23 el~~~l~~~~~~~~~~~i~~~~l~~li~l~~~~~Is~~~ak~ll~~~~~~---~~~~~~ii~~~~l~~i~d~~el~~~v~ 99 (148)
T PF02637_consen 23 ELLGLLNKKGLDIEDSPISPEHLAELINLLEDGKISKKSAKELLRELLEN---GKSPEEIIEENGLWQISDEEELEALVE 99 (148)
T ss_dssp HHHHHHHHHT--TTTSSSTHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHH---TS-HHHHHHHTT---B--CCHHHHHHH
T ss_pred HHHHHHHHCCCChhhcCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCCHHHHHHHcCCCcCCCHHHHHHHHH
Confidence 345555666653 11 23444554443 22346677777776654 356788888999988777799999999
Q ss_pred HHHHhhHhHHHh--hccccchhhhHHHHHhhCC-CCChhhHHHHHHHH
Q 004119 110 EVFEENKNTILE--LRYRTNVGDLFAHVRKRLP-WADPKIVKQLIDAR 154 (773)
Q Consensus 110 ~~i~~~k~~l~~--~ry~~n~g~ll~~vr~~Lk-WAd~k~vK~~vd~~ 154 (773)
++|++|.+++.+ .+=.--+|-|||+|-+..+ =|||+.|++.+.+.
T Consensus 100 ~vi~~n~~~v~~~~~Gk~k~~~~LvGqvMk~t~G~adp~~v~~~l~~~ 147 (148)
T PF02637_consen 100 EVIAENPKEVEDYRNGKKKAIGFLVGQVMKETKGRADPKEVKELLKEK 147 (148)
T ss_dssp HHHHC-HHHHHHHCTT-TTCCHHHHHHHHHCTTS-C-HHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHcChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 999999776542 2222336888888865544 79999999988764
No 144
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=78.82 E-value=3.2 Score=40.83 Aligned_cols=59 Identities=29% Similarity=0.370 Sum_probs=40.3
Q ss_pred HHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCC-CCChhhHHHHHHHH
Q 004119 89 FEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLP-WADPKIVKQLIDAR 154 (773)
Q Consensus 89 fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~Lk-WAd~k~vK~~vd~~ 154 (773)
++++.. -.+|+|||+..|.++|++..+. . ..++|.+|+.++..++ =|||+.|...|-..
T Consensus 83 L~~yLP--~~lseeEi~~~v~~~i~e~ga~----~-~k~mG~vMk~l~~~~~G~~Dgk~vs~~Vk~~ 142 (143)
T PF09424_consen 83 LEEYLP--KQLSEEEIEAIVEEAIAELGAS----S-MKDMGKVMKALMAKLKGRADGKKVSQLVKEA 142 (143)
T ss_dssp HGGGS-------HHHHHHHHHHHHHHTT------B-GGGHHHHHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred HHHhCc--CCCCHHHHHHHHHHHHHHhCCC----C-hHHHHHHHHHHHHHcCCcccHHHHHHHHHhh
Confidence 444544 5899999999999999996543 2 2369999999998754 58999998888654
No 145
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=77.29 E-value=5.6 Score=49.46 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=36.2
Q ss_pred eecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHH
Q 004119 485 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 548 (773)
Q Consensus 485 kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 548 (773)
|||||+|| ..+..++.++ |.++++|-|++..|--..+..++.+.+++.
T Consensus 570 KMSKS~GN---------------~i~p~~~i~~-ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~ 617 (805)
T PRK00390 570 KMSKSKGN---------------VVDPDDIIEK-YGADTARLFEMFAGPPEKDLEWSDSGVEGA 617 (805)
T ss_pred EeCCCCCC---------------CCCHHHHHHH-cChHHHHHHHHhcCCccCCcccCHHHHHHH
Confidence 99999999 4678888876 999999999988764444445665555544
No 146
>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]
Probab=76.97 E-value=44 Score=39.20 Aligned_cols=135 Identities=20% Similarity=0.289 Sum_probs=87.6
Q ss_pred HHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh----------------ccCHHHHHHHHHHHHhc
Q 004119 16 FLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT----------------IKTPAQLEAAFSFFAST 79 (773)
Q Consensus 16 f~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~----------------lks~~Ql~aA~~yl~~~ 79 (773)
....|||+.-|.-++.++.++.-+.++.....- ++...+.|.+ --++++|..-++.+.+.
T Consensus 311 ~~~~gls~~dA~~L~~d~~la~~fe~~~~~~~~----~k~~anW~~~el~~~Ln~~~~~i~~~~~~p~~la~Li~li~~g 386 (483)
T COG0064 311 IKEYGLSEYDARVLTSDKELADYFEEAVKAGAD----AKLAANWLTNELLGLLNKAGITLEESPLTPEQLAELIKLIDEG 386 (483)
T ss_pred HHHcCCCHHHHHHHHcCHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhcCCChhhcCCCHHHHHHHHHHHHcC
Confidence 448999999999999999888888777543331 2333333222 33556666666665432
Q ss_pred C-C--------------CCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhcc--ccchhhhHHHH-HhhCCC
Q 004119 80 G-S--------------ENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRY--RTNVGDLFAHV-RKRLPW 141 (773)
Q Consensus 80 ~-~--------------~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry--~~n~g~ll~~v-r~~LkW 141 (773)
. + ..-+.++.-++-|...+-.+++|+++|.++|++|...++.-|= ..-+|=++|+| |+.=-=
T Consensus 387 ~IS~k~AK~~v~~~~~~~~~~p~~iie~~gL~qisD~~~l~~~V~evia~Np~~ve~yk~GK~~~~~f~vGQVMk~T~Gk 466 (483)
T COG0064 387 TISGKIAKELVFEILANGGKDPEEIIEEKGLVQISDEGELEKIVDEVLAENPKAVEDYKSGKEKALGFLVGQVMKATKGK 466 (483)
T ss_pred CccHHHHHHHHHHHHHccCCCHHHHHHhcCccccCCHHHHHHHHHHHHHHCHHHHHHHhccHHHHHHHHHHHHHHHhcCC
Confidence 1 0 1146677888889888666779999999999999987765332 11234444544 333345
Q ss_pred CChhhHHHHHHHH
Q 004119 142 ADPKIVKQLIDAR 154 (773)
Q Consensus 142 Ad~k~vK~~vd~~ 154 (773)
|||..+...|-..
T Consensus 467 AnP~~v~~ll~~~ 479 (483)
T COG0064 467 ANPQQVNELLKEK 479 (483)
T ss_pred CCHHHHHHHHHHH
Confidence 7888877766544
No 147
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=76.71 E-value=3 Score=52.04 Aligned_cols=47 Identities=17% Similarity=0.093 Sum_probs=35.4
Q ss_pred eecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHH
Q 004119 485 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 547 (773)
Q Consensus 485 kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~ 547 (773)
|||||+|| ..++..+.++ |.+.|+|-|++..+--..+..++.+.++.
T Consensus 604 KMSKS~GN---------------~v~p~~ii~~-ygaDalRl~~l~~~~~~~d~~~~~~~l~~ 650 (842)
T TIGR00396 604 KMSKSKGN---------------GIDPQEIVKK-HGADALRLYIMFMGPIAASLEWNDSGLEG 650 (842)
T ss_pred hhhhcCCC---------------cCCHHHHHHH-cCchHHHHHHHhcCCcCCCCccCHHHHHH
Confidence 99999998 4688888876 99999999998765433444566555543
No 148
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=76.20 E-value=5.1 Score=50.94 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=34.0
Q ss_pred CCCcCch--hHHHHHHHHHHHHHHcCCEEEEEeecCC---------cccchHHHHHHHHHHHHHcCCC
Q 004119 259 PNGYLHI--GHAKAMFVDFGLAKERGGYCYLRYDDTN---------PEAEKKEYIDHIEEIVQWMGWE 315 (773)
Q Consensus 259 PtG~LHI--GhaRaal~n~~~Ar~~~G~~iLRidDTD---------p~r~~~e~~~~I~edL~wLGi~ 315 (773)
-||..|+ ||.- -.|.+++.||-.++-=|++.- ......+.-+.|.++|+-.|+-
T Consensus 312 GTG~V~~~Pahd~---~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l 376 (995)
T PTZ00419 312 GTGAVKITPAHDP---NDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLL 376 (995)
T ss_pred CCCCeEeCCCCCh---HHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCE
Confidence 3788887 4433 367778887744444333211 1134567788899999998874
No 149
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=75.43 E-value=45 Score=32.61 Aligned_cols=112 Identities=22% Similarity=0.338 Sum_probs=72.3
Q ss_pred HHHHHHHcccc-c--cc-ccchhchhhh----ccCHHHHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCH-HHHHHHHH
Q 004119 39 LTAVIHEAAVT-D--GC-ERRIGNLLYT----IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSS-EDIELTVN 109 (773)
Q Consensus 39 L~~ii~~a~~~-~--~~-~k~~g~LL~~----lks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cGVGv~vT~-E~I~~~V~ 109 (773)
|...++..+.. + .. +..-+.||.. .-|..+....++.+-++. -+..++-++.|.+- +|. +++++.|+
T Consensus 23 l~~~l~~~~~~~~~~~i~~~~l~~li~lv~~g~It~~~ak~vl~~~~~~~---~~~~~ii~~~~l~~-isd~~el~~~v~ 98 (147)
T smart00845 23 LLGELNKEGLEIEESPITPEHLAELLKLIEDGTISGKIAKEVLEELLESG---KSPEEIVEEKGLKQ-ISDEGELEAIVD 98 (147)
T ss_pred HHHHHHhCCCCHhhCCCCHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC---CCHHHHHHHcCCcc-CCCHHHHHHHHH
Confidence 34455555553 1 12 2333444443 333456666777665432 46889999999875 776 59999999
Q ss_pred HHHHhhHhHHHhhc--cccchhhhHHHHHhh-CCCCChhhHHHHHHHH
Q 004119 110 EVFEENKNTILELR--YRTNVGDLFAHVRKR-LPWADPKIVKQLIDAR 154 (773)
Q Consensus 110 ~~i~~~k~~l~~~r--y~~n~g~ll~~vr~~-LkWAd~k~vK~~vd~~ 154 (773)
++|++|.+.+.+-| -...+|.+||.|-+. =-=|||+.+.+.|.+.
T Consensus 99 ~vi~~~~~~v~~~~~g~~k~~~~l~G~vMk~~~G~ad~~~v~~~l~~~ 146 (147)
T smart00845 99 EVIAENPKAVEDYRAGKKKALGFLVGQVMKATRGKADPKLVNELLKEK 146 (147)
T ss_pred HHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 99999988665422 122378888888554 3348999998887653
No 150
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.15 E-value=6.5 Score=48.68 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=63.2
Q ss_pred CccEEEEEecCCCCCCCCcc--cccccccccc--cc----ccccCCcceeecCcccccchHHHHHHHH-Hh---C-CC--
Q 004119 405 YDLIAYRIKFTPHPHAGDKW--CIYPSYDYAH--CI----VDSIENITHSLCTLEFETRRASYFWLLH-AL---G-LY-- 469 (773)
Q Consensus 405 ~D~V~~R~~~~~h~~~gd~~--~~~PtY~fa~--~V----DD~~~gITHviRg~E~~~~~~~q~~L~~-aL---g-~~-- 469 (773)
.|--+||-.++-.+..++.| .-|-.|+|.. .. -++-+-|..-|=|.||..+--.|.-+.. +| | |+
T Consensus 481 ~~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~ 560 (814)
T COG0495 481 PDSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKD 560 (814)
T ss_pred CCCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCc
Confidence 34445555444333344555 4466666661 11 1233334444445555444433333222 22 2 22
Q ss_pred CCcee--eeeeccC-CCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCC
Q 004119 470 QPYVW--EYSRLNV-SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 536 (773)
Q Consensus 470 ~P~~w--~f~~Ln~-~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~ 536 (773)
.|..- .-|++-. +|.|||||++| ..++..+.+. |-+.++|-|++..|-...
T Consensus 561 epf~~L~~qGmVl~~~g~KMSKSKgN---------------~v~p~~~i~~-yGADt~Rl~~m~~ap~~~ 614 (814)
T COG0495 561 EPFKKLITQGMVLGEEGEKMSKSKGN---------------VVDPEEAVEK-YGADTVRLYIMFAAPPEQ 614 (814)
T ss_pred cchhhhhccceEEecCCCccccccCC---------------CCCHHHHHHH-hCchHHHHHHHhhCChhh
Confidence 23211 1234334 79999999998 4688888876 999999999999885443
No 151
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=73.39 E-value=6.5 Score=42.82 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=46.1
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHH---cCCEEEEEeecCCcc---cchHHHHHHHHHH---HHHcCCCCCC--cCCCchh
Q 004119 257 PEPNGYLHIGHAKAMFVDFGLAKE---RGGYCYLRYDDTNPE---AEKKEYIDHIEEI---VQWMGWEPFK--ITYTSDY 325 (773)
Q Consensus 257 PsPtG~LHIGhaRaal~n~~~Ar~---~~G~~iLRidDTDp~---r~~~e~~~~I~ed---L~wLGi~pd~--~~~qSd~ 325 (773)
--|||.+||||--.|+-+|.--.. .+-.+++-+-|...- .....+-+++.++ |-..||+|.+ ..+||+-
T Consensus 20 IQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~lF~QS~V 99 (347)
T KOG2713|consen 20 IQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSSLFVQSDV 99 (347)
T ss_pred cCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccceeeeeccc
Confidence 469999999999999999965442 233567777776411 1122555555555 5566999976 5678873
No 152
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=72.20 E-value=0.32 Score=53.67 Aligned_cols=38 Identities=26% Similarity=0.307 Sum_probs=32.1
Q ss_pred cCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCC
Q 004119 500 VDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD 537 (773)
Q Consensus 500 v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~ 537 (773)
+++|++|+..++.+|+++|++|+++++|+...|++...
T Consensus 258 ~r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~f 295 (314)
T PF00749_consen 258 YREWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQF 295 (314)
T ss_dssp HHHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHHC
T ss_pred cccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHHh
Confidence 56899999999999999999999999999988886554
No 153
>PLN02563 aminoacyl-tRNA ligase
Probab=69.14 E-value=5.9 Score=50.17 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=38.2
Q ss_pred CCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhh
Q 004119 482 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 554 (773)
Q Consensus 482 ~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~ 554 (773)
.+.|||||+||. .....+.++ |-++++|.|++..+....+...+...++.. +.|+.
T Consensus 720 ~~eKMSKSKGNv---------------VdP~eiI~k-YGADaLRl~ll~~ap~~dd~~w~~~~V~g~-~rfL~ 775 (963)
T PLN02563 720 RAHKMSKSRGNV---------------VNPDDVVSE-YGADSLRLYEMFMGPLRDSKTWSTSGVEGV-HRFLG 775 (963)
T ss_pred cccccccccCCc---------------CCHHHHHHH-cCcHHHHHHHHhCCCcccccccCHHHHHHH-HHHHH
Confidence 345999999983 456666665 999999999998876555544554555443 34443
No 154
>PLN02381 valyl-tRNA synthetase
Probab=68.90 E-value=10 Score=48.58 Aligned_cols=56 Identities=18% Similarity=0.113 Sum_probs=33.0
Q ss_pred CCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC------c----ccchHHHHHHHHHHHHHcCCC
Q 004119 259 PNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN------P----EAEKKEYIDHIEEIVQWMGWE 315 (773)
Q Consensus 259 PtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTD------p----~r~~~e~~~~I~edL~wLGi~ 315 (773)
=||..|+-=|-.. -.|.+++.||=.++-=|++-- . .....+.-+.|.++|+-.|+-
T Consensus 378 GTG~V~i~PaHd~-~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l 443 (1066)
T PLN02381 378 GTGAVKITPAHDP-NDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLY 443 (1066)
T ss_pred CCCcEEecCCCCh-HHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCE
Confidence 5788887322221 267777877755444343311 0 123556778888999888874
No 155
>PHA01735 hypothetical protein
Probab=66.13 E-value=7.5 Score=33.58 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhcCC--CCCCHHHHHHHcCCCeeeCHHHHHHH
Q 004119 65 TPAQLEAAFSFFASTGS--ENFEVDEFEEACGVGVEVSSEDIELT 107 (773)
Q Consensus 65 s~~Ql~aA~~yl~~~~~--~~~d~~~fe~~cGVGv~vT~E~I~~~ 107 (773)
|++.|.||++||++|.- -+.+-.-+.+-.|+=-.+|.|+|++.
T Consensus 31 TtaDL~AA~d~Lk~NdItgv~~~gspl~~La~~~P~l~~e~vq~~ 75 (76)
T PHA01735 31 TTADLRAACDWLKSNDITGVAVDGSPLAKLAGLMPQLTFEDVQER 75 (76)
T ss_pred cHHHHHHHHHHHHHCCCceeeCCCCHHHHHHhcCccCCHHHHHhc
Confidence 67999999999999862 25777888999998889999998764
No 156
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=61.16 E-value=15 Score=44.83 Aligned_cols=70 Identities=26% Similarity=0.397 Sum_probs=42.3
Q ss_pred hhcCCeEEEEeC-CCCCCcCchhHHHHHH---HHHHHHHHcCCEEEE---EeecCCcccchHHHHHHHHHHHHHcCCCCC
Q 004119 245 EVTGGNVLTRFP-PEPNGYLHIGHAKAMF---VDFGLAKERGGYCYL---RYDDTNPEAEKKEYIDHIEEIVQWMGWEPF 317 (773)
Q Consensus 245 ~~~~g~v~tRFa-PsPtG~LHIGhaRaal---~n~~~Ar~~~G~~iL---RidDTDp~r~~~e~~~~I~edL~wLGi~pd 317 (773)
...+++..+-|| |--||.||+||+.++- |.-+|-|- +|+.+| -|-.|- --...-.+...+.++.+|-.||
T Consensus 40 ~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL-~Gk~vLfPfgFHCTG--MPI~A~AdKLkrEie~fG~ppd 116 (1080)
T KOG0437|consen 40 QKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERL-QGKNVLFPFGFHCTG--MPIKASADKLKREIELFGCPPD 116 (1080)
T ss_pred ccccCceeEeccccccCceeeccceeehhhhHHHHHHHHh-cCceEEeecccccCC--CccHHhHHHHHHHHHHhCCCCC
Confidence 344556666774 7889999999999864 23344443 444333 344454 1122345556667778888765
No 157
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.58 E-value=33 Score=41.96 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=64.2
Q ss_pred HHHHHHhhhhcCC-eEEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC----c-----------cc--
Q 004119 237 KEVLDKHLEVTGG-NVLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----P-----------EA-- 296 (773)
Q Consensus 237 ~~~~~~h~~~~~g-~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD----p-----------~r-- 296 (773)
++.+...+...++ ..+.- +.+|-||+|||+.-++-+..-| -..|+-++-.-.-| | +.
T Consensus 46 ~~~~~~qls~~q~~~f~L~---danG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~ 122 (937)
T KOG0433|consen 46 PEILSSQLSDQQRVEFELK---DANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEG 122 (937)
T ss_pred hHHHHHHHhhccCceEEEe---ccCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccc
Confidence 5566666665443 33332 3899999999999877544333 23444333222222 0 01
Q ss_pred -------------chHHHHHHHHHHHHHcCCC--CCCc--CCCchhHHHHHHHHHHHHHcCCcccCC
Q 004119 297 -------------EKKEYIDHIEEIVQWMGWE--PFKI--TYTSDYFQELYELAVELIRRGHAYVDH 346 (773)
Q Consensus 297 -------------~~~e~~~~I~edL~wLGi~--pd~~--~~qSd~~~~~y~~a~~LI~~G~AY~C~ 346 (773)
...++++..++.++..|+. |..+ +.+.+|--.-.+...+|.++|+.|+.+
T Consensus 123 ~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~ 189 (937)
T KOG0433|consen 123 SRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSF 189 (937)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccC
Confidence 1345677777888888986 4444 455566444446667899999998755
No 158
>KOG2438 consensus Glutamyl-tRNA amidotransferase subunit B [Translation, ribosomal structure and biogenesis]
Probab=49.56 E-value=2.8e+02 Score=32.39 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=84.3
Q ss_pred HHHhcCCChhhHHHHhhCHHHHHHHHHHH--HHcccccccccchhchhhh----------------ccCHHHHHHHHHHH
Q 004119 15 LFLKIGLDDRTAKNTIANNKVTANLTAVI--HEAAVTDGCERRIGNLLYT----------------IKTPAQLEAAFSFF 76 (773)
Q Consensus 15 ~f~~iGL~e~kake~~kN~kl~~~L~~ii--~~a~~~~~~~k~~g~LL~~----------------lks~~Ql~aA~~yl 76 (773)
|-...||+-+.|.-++-++.+..-....+ .+..... .++..-+-+-+ +-++.|+..-++++
T Consensus 327 L~e~~gl~~k~a~~L~~~~~~~~~~~d~v~i~k~~ae~-~~k~~~~Wi~~~~~g~lrq~~ls~~~~~~~p~~la~ll~ll 405 (505)
T KOG2438|consen 327 LVEQYGLSAKDAVTLANEVELLEFYKDSVRIIKYKAET-TPKLITYWIKEEFLGYLRQIALSPNQSIVTPRQLADLLKLL 405 (505)
T ss_pred HHHhhccchhhhhhhhcchhHHHHHhhhhhhhhhcccc-cccchHHHHHHHHHHHHhhccCCccccccChHHHHHHHHHh
Confidence 46678999999999998887766553222 2221111 11111111100 55566666555555
Q ss_pred HhcC---------------C-CCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHh--hccccchhhhHHHHHhh
Q 004119 77 ASTG---------------S-ENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILE--LRYRTNVGDLFAHVRKR 138 (773)
Q Consensus 77 ~~~~---------------~-~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~--~ry~~n~g~ll~~vr~~ 138 (773)
.+.. + +..+...+-++--.+-.=.|++|++.|..+|++|-..+.+ .|-...++.+.|.+.+.
T Consensus 406 ~~~~Is~~~ak~ll~~l~~~~~~~~~s~LIeek~l~~I~dp~eIe~lv~~vm~~h~k~ve~~rsGk~k~~~~l~G~vmk~ 485 (505)
T KOG2438|consen 406 SEETISALSAKQLLRHLLKNPGVMTVSILIEEKRLWQIRDPAEIEELVRSVMEKHPKQVEQLRSGKTKSIKRLIGLVMKS 485 (505)
T ss_pred hhhhhhHHHHHHHHHHHHhCCCcCCHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4321 0 1114444444433344449999999999999998876554 33334567788887654
Q ss_pred -CCCCChhhHHHHHHHHH
Q 004119 139 -LPWADPKIVKQLIDARM 155 (773)
Q Consensus 139 -LkWAd~k~vK~~vd~~~ 155 (773)
-.-|+++++..++.+.+
T Consensus 486 s~g~a~p~~le~~l~~~L 503 (505)
T KOG2438|consen 486 SQGRANPKDLEKILEELL 503 (505)
T ss_pred hhcCCCHHHHHHHHHHHh
Confidence 88999999988887653
No 159
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.91 E-value=11 Score=47.53 Aligned_cols=56 Identities=13% Similarity=0.000 Sum_probs=37.2
Q ss_pred eee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHH
Q 004119 476 YSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 548 (773)
Q Consensus 476 f~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 548 (773)
||. |.-+|.|||||+||. ..-..+.++ |-.+++|-|+++.-++... .++...++..
T Consensus 592 HGfvlDe~GrKMSKSlGN~---------------v~P~~V~~~-yGADiLRLwv~ssd~~~dl-~~s~~il~~~ 648 (933)
T COG0060 592 HGFVLDEKGRKMSKSLGNV---------------VDPQDVIDK-YGADILRLWVASSDYWEDL-RFSDEILKQV 648 (933)
T ss_pred cccEECCCCCCccccCCCc---------------CCHHHHHHh-hCchheeeeeeecCchhcc-ccCHHHHHHH
Confidence 454 688999999999983 445566655 7788888888776643332 3444444433
No 160
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.49 E-value=26 Score=38.45 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=41.9
Q ss_pred CCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcc-------cchHHHHHHHHHHHHHcCCCCCCc
Q 004119 260 NGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPE-------AEKKEYIDHIEEIVQWMGWEPFKI 319 (773)
Q Consensus 260 tG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~-------r~~~e~~~~I~edL~wLGi~pd~~ 319 (773)
++.|||||+-.+++.-++-..++..+++.++|-..- .....|...=..|+=.+|++|...
T Consensus 96 S~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kT 162 (397)
T KOG2145|consen 96 SESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKT 162 (397)
T ss_pred ccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcce
Confidence 588999999999998888889999988877663311 112233333345566789988763
No 161
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.05 E-value=5.7 Score=48.10 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=36.7
Q ss_pred eeeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccc
Q 004119 476 YSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLI 540 (773)
Q Consensus 476 f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~ 540 (773)
-|||-+++.||||+.|| +.||..-.+. |...+.|--++..|=+-.+.++
T Consensus 701 NGHLmLNsEKMSKSTGN---------------fmTL~qaieK-Fgad~tRlalAdaGD~veDANF 749 (1080)
T KOG0437|consen 701 NGHLMLNSEKMSKSTGN---------------FMTLEQAIEK-FGADGTRLALADAGDGVEDANF 749 (1080)
T ss_pred CceEEecchhhccccCC---------------eeeHHHHHHH-hCccceeeeeecccCCcccchh
Confidence 36888999999999999 6798776654 7777777777777766555433
No 162
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.03 E-value=41 Score=38.84 Aligned_cols=46 Identities=26% Similarity=0.421 Sum_probs=36.7
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC
Q 004119 248 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN 293 (773)
Q Consensus 248 ~g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD 293 (773)
..+|++-| +|+----||+||+|+-++..-++| .+-|.=+||..-+-
T Consensus 187 ~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvG 235 (656)
T KOG4426|consen 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVG 235 (656)
T ss_pred eeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeecccc
Confidence 35788999 455557899999999999999999 46788888876553
No 163
>PLN02207 UDP-glycosyltransferase
Probab=30.72 E-value=75 Score=37.22 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=47.9
Q ss_pred CCHHHH-HHHcCCCe------------eeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCCCCChhhHHHH
Q 004119 84 FEVDEF-EEACGVGV------------EVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWADPKIVKQL 150 (773)
Q Consensus 84 ~d~~~f-e~~cGVGv------------~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~LkWAd~k~vK~~ 150 (773)
+..+.+ .+.-|||| .|+.|+|.++|++++.+ + ..+|+-|...+-..+|+. .++|..=...
T Consensus 383 ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~----~~~~r~~a~~l~~~a~~A--~~~GGSS~~~ 455 (468)
T PLN02207 383 QLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-D----NNVVRKRVMDISQMIQRA--TKNGGSSFAA 455 (468)
T ss_pred hhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-c----hHHHHHHHHHHHHHHHHH--hcCCCcHHHH
Confidence 333443 45578877 46999999999999962 1 245666676766666654 3344444456
Q ss_pred HHHHHHHhcCCCc
Q 004119 151 IDARMYELLGERT 163 (773)
Q Consensus 151 vd~~~~~llgpk~ 163 (773)
++..+.++.|-||
T Consensus 456 l~~~v~~~~~~~~ 468 (468)
T PLN02207 456 IEKFIHDVIGIKT 468 (468)
T ss_pred HHHHHHHHHhccC
Confidence 7777777777665
No 164
>COG1610 Uncharacterized conserved protein [Function unknown]
Probab=23.15 E-value=2e+02 Score=28.73 Aligned_cols=52 Identities=15% Similarity=0.304 Sum_probs=39.8
Q ss_pred eeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhh-CCCCChhhHHHHHHHH
Q 004119 98 EVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKR-LPWADPKIVKQLIDAR 154 (773)
Q Consensus 98 ~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~-LkWAd~k~vK~~vd~~ 154 (773)
-+|+++|..+|.+.|++--+.-. ..+|++|+.++.. --=||+..+-..|-..
T Consensus 94 qLsd~e~~~~v~~aIae~Gas~~-----~dMGkvM~al~~k~~GkaD~~~vs~~VK~~ 146 (148)
T COG1610 94 QLSEDELRALVDAAIAEVGASSM-----KDMGKVMKALKPKVAGKADGGRVSKLVKEL 146 (148)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHhHHhcccCcHHHHHHHHHHH
Confidence 38999999999999988555332 2499999999976 5578888777766543
No 165
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=23.15 E-value=65 Score=27.78 Aligned_cols=29 Identities=10% Similarity=0.296 Sum_probs=24.0
Q ss_pred CCCCChhHHHHHHHhcCCChhhHHHHhhC
Q 004119 4 VSKGDKSEILELFLKIGLDDRTAKNTIAN 32 (773)
Q Consensus 4 ~~~~~~~~~~~~f~~iGL~e~kake~~kN 32 (773)
.++.++...+..++.+|+++++++.+++|
T Consensus 6 ~~~~R~daA~dam~~lG~~~~~v~~vl~~ 34 (65)
T PF10440_consen 6 KGNERIDAALDAMRQLGFSKKQVRPVLKN 34 (65)
T ss_pred cCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45667778889999999999998887765
No 166
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.22 E-value=3.6e+02 Score=33.40 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=34.8
Q ss_pred HHHhhhhcCCeEEEEe---CCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEE
Q 004119 240 LDKHLEVTGGNVLTRF---PPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLR 288 (773)
Q Consensus 240 ~~~h~~~~~g~v~tRF---aPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLR 288 (773)
.+..++.+.|+----| ||-.||..|-||.-+..+-....|. ..|.++=|
T Consensus 27 F~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeR 80 (1070)
T KOG0434|consen 27 FHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVER 80 (1070)
T ss_pred HHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceee
Confidence 4455666666544344 8999999999999999998877773 35555543
No 167
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.60 E-value=2.8e+02 Score=30.76 Aligned_cols=86 Identities=17% Similarity=0.307 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCCCCChhhHH
Q 004119 69 LEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWADPKIVK 148 (773)
Q Consensus 69 l~aA~~yl~~~~~~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~LkWAd~k~vK 148 (773)
|.|.|+++.... ..-+..++++.|- =.|++++.++.-...- +...|+.-.+--|++-||+.+-|.|+..=|
T Consensus 206 l~a~i~ll~qaa-~~~~~~~l~~~~a----adPdd~~aa~~lA~~~----~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 206 LQAQIELLEQAA-ATPEIQDLQRRLA----ADPDDVEAALALADQL----HLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHH----hCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 445666665432 4456677777776 5677777777655544 455777777889999999999999999999
Q ss_pred HHHHHHHHHhcCCCchh
Q 004119 149 QLIDARMYELLGERTAA 165 (773)
Q Consensus 149 ~~vd~~~~~llgpk~~~ 165 (773)
.-|+ +++++||.+..
T Consensus 277 ~lle--~f~~~g~~Dp~ 291 (304)
T COG3118 277 TLLE--LFEAFGPADPL 291 (304)
T ss_pred HHHH--HHHhcCCCCHH
Confidence 9988 88999998764
No 168
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=20.46 E-value=2.2e+02 Score=29.07 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=31.7
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCccc------chHHHHHHHHHHHHHcCCCC
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA------EKKEYIDHIEEIVQWMGWEP 316 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r------~~~e~~~~I~edL~wLGi~p 316 (773)
-+.+||-| +|+||+..+. +.+.+. + +.++=+-.-++.+ ...+-.+.|...+.-+|++.
T Consensus 3 l~~GrF~P-----~H~GHl~~i~--~a~~~~-~-~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~ 66 (181)
T cd02168 3 VYIGRFQP-----FHNGHLAVVL--IALEKA-K-KVIILIGSARTARNIKNPWTSEEREVMIEAALSDAGADL 66 (181)
T ss_pred EEeeccCC-----CCHHHHHHHH--HHHHHC-C-eEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCc
Confidence 46789988 8999997653 444432 2 6666554333221 22333444444455555543
Done!