Query 004119
Match_columns 773
No_of_seqs 370 out of 2461
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:53:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qtq_A GLNRS, protein (glutami 100.0 1E-143 4E-148 1222.5 46.9 526 237-772 12-552 (553)
2 2hz7_A Glutaminyl-tRNA synthet 100.0 5E-139 2E-143 1226.6 49.0 523 237-771 52-634 (851)
3 3aii_A Glutamyl-tRNA synthetas 100.0 3E-120 1E-124 1030.5 37.8 454 245-758 91-548 (553)
4 4gri_A Glutamate--tRNA ligase; 100.0 5.4E-76 1.9E-80 671.0 18.4 312 237-573 9-344 (512)
5 2cfo_A Glutamyl-tRNA synthetas 100.0 1.1E-73 3.8E-78 647.5 21.0 294 250-573 1-319 (492)
6 1j09_A Glutamyl-tRNA synthetas 100.0 9.2E-74 3.2E-78 644.7 18.5 288 250-573 1-314 (468)
7 2ja2_A Glutamyl-tRNA synthetas 100.0 1.7E-73 5.7E-78 645.5 20.0 311 247-586 3-347 (498)
8 4g6z_A Glutamate-tRNA ligase; 100.0 2.1E-72 7.1E-77 633.8 17.7 301 248-587 23-354 (490)
9 3afh_A Glutamyl-tRNA synthetas 100.0 5.4E-70 1.8E-74 616.4 12.7 290 246-573 21-325 (488)
10 3al0_C Glutamyl-tRNA(Gln) amid 100.0 2.8E-67 9.6E-72 606.2 8.9 300 249-586 128-448 (592)
11 2o5r_A Glutamyl-tRNA synthetas 100.0 5.4E-66 1.8E-70 584.0 18.0 301 250-586 13-352 (481)
12 1nzj_A Hypothetical protein YA 100.0 7.3E-64 2.5E-68 535.5 14.2 268 248-563 3-289 (298)
13 3tl4_X Glutaminyl-tRNA synthet 100.0 3.8E-47 1.3E-51 378.8 16.7 158 8-167 3-186 (187)
14 1irx_A Lysyl-tRNA synthetase; 100.0 1.6E-29 5.4E-34 289.6 6.0 275 250-573 21-351 (523)
15 1li5_A Cysrs, cysteinyl-tRNA s 99.9 1.8E-25 6E-30 252.4 20.3 260 248-550 20-314 (461)
16 3tqo_A Cysteinyl-tRNA syntheta 99.9 9.7E-26 3.3E-30 253.6 17.7 248 256-549 32-316 (462)
17 3sp1_A Cysteinyl-tRNA syntheta 99.9 2.5E-23 8.5E-28 235.4 18.5 252 256-551 49-349 (501)
18 3c8z_A Cysteinyl-tRNA syntheta 99.9 3.2E-23 1.1E-27 231.1 18.3 259 254-551 44-341 (414)
19 2csx_A Methionyl-tRNA syntheta 99.8 2.8E-20 9.7E-25 211.4 16.0 270 250-551 7-345 (497)
20 2d5b_A Methionyl-tRNA syntheta 99.8 3.3E-18 1.1E-22 194.3 18.0 279 251-551 6-347 (500)
21 1iq0_A Arginyl-tRNA synthetase 99.7 2E-16 6.8E-21 183.7 14.3 297 227-573 75-466 (592)
22 2dlc_X Tyrosyl-tRNA synthetase 99.6 5.6E-16 1.9E-20 171.7 13.2 193 236-493 25-235 (394)
23 3h99_A Methionyl-tRNA syntheta 99.6 3.5E-14 1.2E-18 163.8 23.3 286 251-554 21-400 (560)
24 4dlp_A Aminoacyl-tRNA syntheta 99.6 1.6E-14 5.6E-19 165.7 18.7 275 251-549 28-369 (536)
25 2x1l_A Methionyl-tRNA syntheta 99.6 1.6E-14 5.3E-19 165.2 17.6 279 251-551 15-360 (524)
26 3fnr_A Arginyl-tRNA synthetase 99.5 5.2E-13 1.8E-17 150.7 17.0 256 248-545 29-328 (464)
27 2cyb_A Tyrosyl-tRNA synthetase 99.4 7E-13 2.4E-17 143.3 11.9 191 237-492 20-221 (323)
28 1n3l_A Tyrosyl-tRNA synthetase 99.4 1.3E-12 4.6E-17 143.6 14.3 192 236-492 23-229 (372)
29 1f7u_A Arginyl-tRNA synthetase 99.4 6.7E-13 2.3E-17 154.3 11.2 247 248-573 142-482 (607)
30 3kfl_A Methionyl-tRNA syntheta 99.4 6.4E-12 2.2E-16 145.2 17.9 96 250-345 28-143 (564)
31 2zue_A Arginyl-tRNA synthetase 99.3 3.3E-12 1.1E-16 149.2 12.8 250 248-545 118-496 (629)
32 3u1f_A Methionyl-tRNA syntheta 99.3 5.9E-11 2E-15 136.0 17.6 94 251-344 12-125 (542)
33 1rqg_A Methionyl-tRNA syntheta 99.2 1.1E-10 3.8E-15 138.5 14.4 94 251-344 5-119 (722)
34 1ile_A Ilers, isoleucyl-tRNA s 98.7 1.2E-07 4.2E-12 114.0 15.5 93 252-344 42-173 (821)
35 2g36_A Tryptophanyl-tRNA synth 98.6 7.7E-08 2.6E-12 104.6 10.7 181 249-492 13-212 (340)
36 2cya_A Tyrosyl-tRNA synthetase 98.6 2.5E-07 8.6E-12 101.5 14.5 192 236-490 22-243 (364)
37 2zp1_A Tyrosyl-tRNA synthetase 98.6 2.8E-07 9.5E-12 99.2 12.0 110 237-355 17-133 (314)
38 2yy5_A Tryptophanyl-tRNA synth 98.5 1E-07 3.5E-12 103.9 6.8 180 251-492 7-209 (348)
39 1i6k_A TRPRS, tryptophanyl-tRN 98.4 8.2E-07 2.8E-11 96.1 10.0 176 251-492 4-199 (328)
40 1yi8_B Tryptophanyl-tRNA synth 98.3 1.1E-06 3.8E-11 95.9 9.5 182 249-492 23-222 (351)
41 2el7_A Tryptophanyl-tRNA synth 98.2 3E-06 1E-10 92.0 9.3 172 258-492 9-202 (337)
42 4arc_A Leucine--tRNA ligase; l 98.0 1E-05 3.4E-10 97.8 8.7 94 251-344 56-171 (880)
43 2v0c_A Aminoacyl-tRNA syntheta 97.9 1.6E-05 5.4E-10 96.4 9.8 94 251-344 36-151 (878)
44 1wkb_A Leucyl-tRNA synthetase; 97.9 2.1E-05 7.3E-10 94.4 9.5 94 251-344 37-178 (810)
45 3jxe_A Tryptophanyl-tRNA synth 97.6 0.00064 2.2E-08 75.2 15.5 171 250-492 75-260 (392)
46 1ffy_A Isoleucyl-tRNA syntheta 97.6 6.4E-05 2.2E-09 91.5 6.7 94 251-344 51-178 (917)
47 1gax_A Valrs, valyl-tRNA synth 97.5 0.00017 5.7E-09 87.2 9.5 94 251-344 37-168 (862)
48 3tzl_A Tryptophanyl-tRNA synth 97.5 0.00013 4.3E-09 78.8 7.4 87 258-353 11-105 (322)
49 3hzr_A Tryptophanyl-tRNA synth 97.4 0.0014 4.8E-08 72.3 14.2 86 248-335 80-176 (386)
50 1wz2_A Leucyl-tRNA synthetase; 97.4 0.00013 4.6E-09 89.2 6.0 94 251-344 37-178 (967)
51 3hv0_A Tryptophanyl-tRNA synth 97.3 0.00085 2.9E-08 74.2 11.4 92 237-331 62-166 (393)
52 1h3f_A Tyrosyl-tRNA synthetase 97.2 0.00053 1.8E-08 76.8 7.5 192 236-492 24-239 (432)
53 2ip1_A Tryptophanyl-tRNA synth 97.1 0.0028 9.7E-08 70.9 12.7 188 237-492 90-302 (432)
54 3i05_A Tryptophanyl-tRNA synth 97.0 0.0028 9.6E-08 70.1 11.5 71 256-327 84-165 (395)
55 2cyc_A Tyrosyl-tRNA synthetase 97.0 0.0089 3E-07 65.7 15.4 111 236-353 20-147 (375)
56 2jan_A Tyrosyl-tRNA synthetase 96.9 0.012 4.1E-07 65.8 15.6 82 442-531 187-272 (432)
57 3foc_A Tryptophanyl-tRNA synth 96.9 0.003 1E-07 70.9 10.5 98 237-336 79-190 (451)
58 3tze_A Tryptophanyl-tRNA synth 96.9 0.0089 3.1E-07 66.3 13.8 71 256-327 107-188 (406)
59 2j5b_A Tyrosyl-tRNA synthetase 96.8 0.008 2.7E-07 65.4 12.3 88 237-326 28-127 (348)
60 3vgj_A Tyrosyl-tRNA synthetase 96.6 0.022 7.5E-07 62.6 14.3 86 237-326 44-143 (373)
61 1r6t_A Tryptophanyl-tRNA synth 96.3 0.0055 1.9E-07 69.4 7.6 51 442-492 303-356 (477)
62 3p0j_A Tyrosyl-tRNA synthetase 96.2 0.036 1.2E-06 65.5 13.7 191 236-492 27-237 (690)
63 1r6u_A Tryptophanyl-tRNA synth 96.1 0.021 7.1E-07 64.0 10.7 74 251-327 111-195 (437)
64 1jil_A Tyrrs, tyrosyl-tRNA syn 96.0 0.18 6.2E-06 56.2 17.9 81 442-531 186-271 (420)
65 3a04_A Tryptophanyl-tRNA synth 96.0 0.01 3.6E-07 65.1 7.8 116 223-354 51-176 (372)
66 2ts1_A Tyrosyl-tRNA synthetase 95.4 0.53 1.8E-05 52.4 18.6 82 442-532 185-271 (419)
67 2yxn_A Tyrosyl-tRNA synthetase 95.4 0.13 4.4E-06 55.3 13.1 88 236-326 21-130 (322)
68 2pid_A Tyrosyl-tRNA synthetase 95.1 0.13 4.3E-06 56.2 12.0 97 442-553 210-310 (356)
69 1wz2_A Leucyl-tRNA synthetase; 94.0 0.078 2.7E-06 65.0 8.1 62 471-548 635-697 (967)
70 3prh_A Tryptophanyl-tRNA synth 93.6 0.084 2.9E-06 58.2 6.6 92 251-353 38-137 (388)
71 1wkb_A Leucyl-tRNA synthetase; 93.4 0.097 3.3E-06 62.8 7.3 62 471-548 635-697 (810)
72 1ffy_A Isoleucyl-tRNA syntheta 92.5 0.2 6.8E-06 61.1 8.2 59 472-547 581-640 (917)
73 3sz3_A Tryptophanyl-tRNA synth 92.1 0.14 4.6E-06 55.6 5.5 93 250-353 8-108 (341)
74 3al0_B Aspartyl/glutamyl-tRNA( 92.1 1.3 4.6E-05 49.9 13.6 139 11-154 305-478 (482)
75 3ip4_B Aspartyl/glutamyl-tRNA( 91.6 2.9 9.8E-05 47.3 15.6 147 10-160 297-477 (483)
76 1gax_A Valrs, valyl-tRNA synth 91.4 0.18 6.1E-06 61.1 5.9 61 472-548 514-575 (862)
77 3n9i_A Tryptophanyl-tRNA synth 91.1 0.17 5.7E-06 55.0 4.8 92 250-353 17-117 (346)
78 1ng6_A Hypothetical protein YQ 89.1 0.51 1.7E-05 45.1 5.9 108 38-154 28-146 (148)
79 3p0j_A Tyrosyl-tRNA synthetase 87.9 1 3.5E-05 53.2 8.6 74 253-327 385-470 (690)
80 4arc_A Leucine--tRNA ligase; l 87.7 0.78 2.7E-05 55.6 7.5 47 485-547 639-685 (880)
81 3h0l_B Aspartyl/glutamyl-tRNA( 83.5 3.1 0.00011 46.9 9.3 141 10-155 300-475 (478)
82 2v0c_A Aminoacyl-tRNA syntheta 82.7 1.9 6.4E-05 52.4 7.6 49 484-548 636-684 (878)
83 1zq1_C Glutamyl-tRNA(Gln) amid 79.8 1.3 4.4E-05 51.6 4.5 143 10-159 460-631 (633)
84 2d6f_C Glutamyl-tRNA(Gln) amid 76.5 0.7 2.4E-05 53.7 1.1 70 84-155 545-615 (619)
85 1y42_X Tyrosyl-tRNA synthetase 66.0 19 0.00064 39.6 9.4 52 237-291 53-105 (392)
86 3i5g_B Myosin regulatory light 60.9 15 0.00051 34.1 6.5 48 63-110 81-129 (153)
87 2hz7_A Glutaminyl-tRNA synthet 56.6 2.3 7.9E-05 51.2 0.0 133 16-154 688-849 (851)
88 2lhi_A Calmodulin, serine/thre 56.0 32 0.0011 32.5 8.1 47 65-111 82-129 (176)
89 3mse_B Calcium-dependent prote 50.4 41 0.0014 31.3 7.8 92 8-113 57-153 (180)
90 1h8b_A ACT-EF34, alpha-actinin 47.5 26 0.00088 29.3 5.1 41 64-111 7-47 (75)
91 2lmt_A Calmodulin-related prot 41.4 57 0.002 29.3 7.0 49 63-111 79-128 (148)
92 2p12_A Hypothetical protein DU 38.6 40 0.0014 33.1 5.6 53 84-143 120-175 (176)
93 2lv7_A Calcium-binding protein 38.2 15 0.00051 31.9 2.3 45 67-111 36-81 (100)
94 4fp9_B Mterf domain-containing 37.8 1.7E+02 0.0058 31.3 10.9 138 8-154 45-191 (335)
95 1exr_A Calmodulin; high resolu 37.7 80 0.0027 27.9 7.3 47 65-111 81-128 (148)
96 4dvc_A Thiol:disulfide interch 37.2 68 0.0023 29.6 6.9 74 5-78 102-182 (184)
97 3u0k_A Rcamp; fluorescent prot 36.1 54 0.0018 36.6 6.8 93 8-111 320-420 (440)
98 2mys_B Myosin; muscle protein, 33.2 64 0.0022 29.1 5.9 48 64-111 92-140 (166)
99 3khe_A Calmodulin-like domain 32.3 50 0.0017 30.5 5.1 48 63-111 119-166 (191)
100 4ds7_A Calmodulin, CAM; protei 31.3 73 0.0025 27.6 5.8 47 65-111 82-129 (147)
101 3pm8_A PFCDPK2, calcium-depend 31.1 58 0.002 31.0 5.4 49 63-111 125-176 (197)
102 1wdc_B Scallop myosin; calcium 29.8 83 0.0028 27.9 6.0 48 64-111 84-132 (156)
103 2kz2_A Calmodulin, CAM; TR2C, 29.0 55 0.0019 27.4 4.3 49 63-111 25-74 (94)
104 2pvb_A Protein (parvalbumin); 28.7 67 0.0023 26.9 4.9 48 64-111 38-89 (108)
105 3l9s_A Thiol:disulfide interch 28.5 91 0.0031 30.0 6.4 72 7-78 105-189 (191)
106 3mva_O Transcription terminati 27.6 67 0.0023 34.1 5.7 80 10-110 20-109 (343)
107 1pva_A Parvalbumin; calcium bi 26.6 76 0.0026 26.6 4.9 48 64-111 39-90 (110)
108 1k2h_A S100A1, S-100 protein, 26.4 61 0.0021 26.4 4.1 45 67-111 9-61 (93)
109 1k94_A Grancalcin; penta-EF-ha 26.1 1.4E+02 0.0047 26.8 6.9 96 8-111 17-115 (165)
110 3fs7_A Parvalbumin, thymic; ca 25.6 79 0.0027 26.5 4.8 48 64-111 39-90 (109)
111 3l9v_A Putative thiol-disulfid 25.5 1.1E+02 0.0039 29.0 6.4 73 7-79 98-184 (189)
112 3fwb_A Cell division control p 25.3 1.1E+02 0.0037 27.0 5.9 48 64-111 93-141 (161)
113 2k9s_A Arabinose operon regula 24.5 1.5E+02 0.0053 25.2 6.5 43 67-113 3-46 (107)
114 2ct9_A Calcium-binding protein 24.3 58 0.002 30.9 4.1 50 65-114 111-162 (208)
115 3i5g_C Myosin catalytic light 24.2 54 0.0018 30.4 3.7 48 64-111 82-130 (159)
116 1y42_X Tyrosyl-tRNA synthetase 23.0 1.1E+02 0.0037 33.6 6.2 51 442-492 232-300 (392)
117 3hz8_A Thiol:disulfide interch 22.6 1.7E+02 0.0057 27.9 7.0 40 7-46 107-147 (193)
118 3kzq_A Putative uncharacterize 22.5 1.2E+02 0.004 29.2 5.9 76 3-78 119-203 (208)
119 1rro_A RAT oncomodulin; calciu 21.6 79 0.0027 26.5 4.0 48 64-111 38-89 (108)
120 3ox6_A Calcium-binding protein 21.3 82 0.0028 27.5 4.2 46 66-111 87-134 (153)
121 1tiz_A Calmodulin-related prot 21.2 61 0.0021 24.3 2.9 44 68-111 2-46 (67)
122 3mn2_A Probable ARAC family tr 20.4 2.4E+02 0.0082 23.9 6.9 42 67-112 2-43 (108)
123 5pal_A Parvalbumin; calcium-bi 20.4 68 0.0023 26.9 3.3 48 64-111 38-89 (109)
124 1avs_A Troponin C; muscle cont 20.3 89 0.003 25.4 3.9 44 68-111 21-65 (90)
125 3hd5_A Thiol:disulfide interch 20.2 1.8E+02 0.0062 27.3 6.6 73 7-79 105-185 (195)
126 2obh_A Centrin-2; DNA repair c 20.2 1.1E+02 0.0037 27.1 4.7 46 66-111 78-124 (143)
No 1
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=1.1e-143 Score=1222.51 Aligned_cols=526 Identities=49% Similarity=0.866 Sum_probs=493.3
Q ss_pred HHHHHHhhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCC
Q 004119 237 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 315 (773)
Q Consensus 237 ~~~~~~h~~~~-~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~ 315 (773)
..++++.|... .++|||||||||||+|||||||||++||++||+|||+|+|||||||++|+.++|+++|+++|+|||+.
T Consensus 12 ~~~i~~dl~~~~~~~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~wLGl~ 91 (553)
T 1qtq_A 12 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFH 91 (553)
T ss_dssp HHHHHHHHHHTSCSSCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHHHcCCC
Confidence 45677777764 45799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhh----ccCCCCCCCCCHHHHhHHHHHhhcCcccCCceE
Q 004119 316 PF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 390 (773)
Q Consensus 316 pd-~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~----~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~ 390 (773)
|| .++|||+||++||++|++||++|+||+|+||+++|+++|+ ++++++||+++++|++.+|++|++|.+.+|+++
T Consensus 92 wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g~~~ 171 (553)
T 1qtq_A 92 WSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKAC 171 (553)
T ss_dssp CSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred CCCCCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCCceE
Confidence 96 5899999999999999999999999999999999999985 578899999999999999999999998889999
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCC-
Q 004119 391 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY- 469 (773)
Q Consensus 391 lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~- 469 (773)
||+|+++.+++.+++|||+||+...+||+|||+|+||||||||||||||+|||||||||+||++|++.|.||+++|||+
T Consensus 172 lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~l~~alg~~~ 251 (553)
T 1qtq_A 172 LRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV 251 (553)
T ss_dssp EEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCSC
T ss_pred EEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeeeeeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHH
Q 004119 470 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 549 (773)
Q Consensus 470 ~P~~w~f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~ 549 (773)
.|.||+|+|||++|+|||||+++++|++|+|+||||||++||++||++||+|+||++||+++||++++..+++++|++++
T Consensus 252 ~P~~~~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~~ 331 (553)
T 1qtq_A 252 HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCI 331 (553)
T ss_dssp CCEEEEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHH
T ss_pred CCCeEEEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHhhhcCCCceeeEecceeEEEEeCCCCceeeeecccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCC
Q 004119 550 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGK 629 (773)
Q Consensus 550 r~~~~~~~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~rl~~g~ 629 (773)
+..++..++|+||||||+||.|+|+| +..+.+++|+||+ +|++|.|.++|++.||||++||++.++|+|+||+||+
T Consensus 332 ~~~l~~~~~r~~av~d~~Kl~~~N~~-~~~~~~~~p~~p~---~~~~g~r~~~~~~~i~ie~~Df~e~~~~~~~rl~~g~ 407 (553)
T 1qtq_A 332 REDLNENAPRAMAVIDPVKLVIENYQ-GEGEMVTMPNHPN---KPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGK 407 (553)
T ss_dssp HHHHHHHSCEECEESSEEEEEBTTCC-SSCEEEEEESCSS---CGGGCEEEEEECSEEEEETTTEESSCCTTCCSEETTS
T ss_pred HhCcccccccccceeccceEEEEcCC-CceEEEEecCCCC---ChHHhhhhHhhCceEEEEHHHhhccCccccccCCCCC
Confidence 98888889999999999999999998 5557889999988 7999999999999999999999999999999999999
Q ss_pred EEEEeeeeeEEEeEeeecCCCCCEEEEEEEEcCCC-------CCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCC
Q 004119 630 SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSK-------KTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPA 702 (773)
Q Consensus 630 ~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~-------~~K~k~~I~Wv~~~~~~~~~v~~evr~y~~Lf~~~~p~ 702 (773)
+|+|+++|+|+|++++ +|++|+|++|+|+|+++. .+|+|++|||||+ .++++||||+|++||++++|+
T Consensus 408 ~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~~~g~~~~~~k~k~~ihWv~~----~~~~~~~~~~yd~L~~~~~p~ 482 (553)
T 1qtq_A 408 EVRLRNAYVIKAERVE-KDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSA----AHALPVEIRLYDRLFSVPNPG 482 (553)
T ss_dssp EEEETTSCEEEEEEEE-CCSSSCCCEEEECCCSSCC-----------CEECCEES----TTCEEEEEEEECCSBSSSCGG
T ss_pred EEEeccEEEEEEEEEE-EcCCCCEEEEEEEEecccccCCCccccccCCEEEEeec----CCCEeEEEEecccccCCCCCC
Confidence 9999999999999998 888999999999998852 3789999999998 578999999999999999998
Q ss_pred CccCccccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEec-CCCCCCeeEeeecCCCCCCCCCC
Q 004119 703 ELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEKLVFNRTVTLKDSFPKGG 772 (773)
Q Consensus 703 ~~~~~l~~iN~~S~~v~~~~~~e~~~~~~~~~~~~QfeR~Gyf~vD~-~~~~~~~v~n~~v~lk~~~~k~~ 772 (773)
+.++|+++|||+|+.++ .|++||++.++++|++|||||+||||||+ ||+++++||||||+||++++|..
T Consensus 483 ~~~~~~~~~np~s~~~~-~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~vfnr~v~l~~~~~~~~ 552 (553)
T 1qtq_A 483 AADDFLSVINPESLVIK-QGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVG 552 (553)
T ss_dssp GSTTGGGGBCTTSEEEE-EEEECGGGGGCCTTCEEEETTTEEEESCTTTCCSSSCEEEEEEECCCC-----
T ss_pred cCcchhhhcCCcchhhe-eeEecHhHhhCCCCCEEEEEEeeEEEECcCCCCCCCeeEEeEEEcccchhhhc
Confidence 66899999999999987 68999999999999999999999999996 89999999999999999999853
No 2
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=5.2e-139 Score=1226.64 Aligned_cols=523 Identities=41% Similarity=0.732 Sum_probs=490.3
Q ss_pred HHHHHHhhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCC
Q 004119 237 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 315 (773)
Q Consensus 237 ~~~~~~h~~~~-~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~ 315 (773)
.++++++|... .+.|+|||||||||||||||||||++||++||+|||+|+|||||||++|+.++|+++|+++|+|||+.
T Consensus 52 ~~ii~~dl~~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL~wLGl~ 131 (851)
T 2hz7_A 52 TEIIERDLEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLD 131 (851)
T ss_dssp HHHHHHHHHTTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCC
Confidence 56788888763 45799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhh----ccCCCCCCCCCHHHHhHHHHHhhcCcccCCceE
Q 004119 316 PF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 390 (773)
Q Consensus 316 pd-~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~----~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~ 390 (773)
|| .++|||+||++|+++|++||++|+||+|+||+++|+++|+ ++++++||+++++|++.+|++|++|.+.+|+++
T Consensus 132 wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~g~~v 211 (851)
T 2hz7_A 132 WGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHV 211 (851)
T ss_dssp CTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred CCCCcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCcccCCee
Confidence 96 6899999999999999999999999999999999999886 377889999999999999999999999999999
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCC
Q 004119 391 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQ 470 (773)
Q Consensus 391 lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~ 470 (773)
||+|+++.+++.+++|||+||+...+||+||++|+||||||||||||||+|||||||||.||++|++.|.||+++|||+.
T Consensus 212 lR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~l~~alG~~~ 291 (851)
T 2hz7_A 212 LRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDP 291 (851)
T ss_dssp EEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTTCSS
T ss_pred EEEeccccccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -CceeeeeeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHH
Q 004119 471 -PYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 549 (773)
Q Consensus 471 -P~~w~f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~ 549 (773)
|.||+|+|||++|+|||||+++++|++|+|+||||||++||++||++||+|+||++||+++||++.+..+++++|+.++
T Consensus 292 ~P~~~~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~ 371 (851)
T 2hz7_A 292 RPHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAV 371 (851)
T ss_dssp CCEEEEECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHH
T ss_pred CCCceEEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHhhhcCCCceeeEecceeEEEEeCCCCceeeeecccCCCCCCC-------------------CCCceeEecccceEEEe
Q 004119 550 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQAD-------------------DASAFYKVPFSNVVYIE 610 (773)
Q Consensus 550 r~~~~~~~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~-------------------~~~g~~~v~~~~~iyIe 610 (773)
+..++..++|+|+||||+||.|+|+|++. .+++|+||+ + |++|+|.|+|+++||||
T Consensus 372 r~~l~~~~~r~~av~d~~Kl~~~N~~~~~--~~~~p~~p~---~~~~~~~~~~~~~~~~~~~~~~~g~r~v~~~~~iyie 446 (851)
T 2hz7_A 372 RDDLNHRAPRVMAVLDPVKVTLTNLDGEK--TLSLPYWPH---DVVRDSPDGLVGMPGGGRVAPEEAVRDVPLTRELYIE 446 (851)
T ss_dssp HHHHHTTCCEECEESSEEEEEETTCCSCE--EEEEESSCH---HHHHTCTTSCEECSSSCEECGGGCEEEEEECSEEEEE
T ss_pred HhcccccccccceEecceeEEEecCCCCe--EEEecCCcc---cccccccccccccccccccCccCceEEEEEcCeEEEE
Confidence 99999999999999999999999999875 789999998 5 89999999999999999
Q ss_pred cCcccccCCccccCcCCCCEEEEeeeeeEEEeEeeecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEE
Q 004119 611 HSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVR 690 (773)
Q Consensus 611 ~~D~~~~~~~~~~rl~~g~~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~~~K~k~~I~Wv~~~~~~~~~v~~evr 690 (773)
++||++.++++|+||+||++|+|+++|+|+|++++ +|++|+|++|+|+|..+. +|+|++|||||+ .++++||||
T Consensus 447 ~~Df~e~~~~~~~rl~~g~~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~-~k~k~~ihWv~~----~~~~~~e~r 520 (851)
T 2hz7_A 447 RDDFSPAPPKGFKRLTPGGTVRLRGAGIIRADDFG-TDEAGQVTHIRATLLGED-AKAAGVIHWVSA----ERALPAEFR 520 (851)
T ss_dssp GGGBCSSCCTTCCSBCTTCEEEETTTEEEEEEEEE-ECTTSCEEEEEEEECCTT-CCCSCEECCEET----TTCEEEEEE
T ss_pred HHHhhhcccccceecCCCCEEEecCeEEEEEEEEE-ecCCCCEEEEEEEEcccC-CccCceEEEeec----CCCeeEEEE
Confidence 99999999999999999999999999999999998 888999999999996554 689999999998 568999999
Q ss_pred eccccCCCCCCCC----------------------------ccCccccCCCCCceeecceEeccccccCCCCCeEEEEEe
Q 004119 691 LFEKLFNSENPAE----------------------------LDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERL 742 (773)
Q Consensus 691 ~y~~Lf~~~~p~~----------------------------~~~~l~~iN~~S~~v~~~~~~e~~~~~~~~~~~~QfeR~ 742 (773)
+||+||++++|++ .++|+++|||+|++++ .|++||++.++++|++|||||+
T Consensus 521 ~yd~Lf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~s~~~~-~~~~e~~~~~~~~~~~~QfeR~ 599 (851)
T 2hz7_A 521 LYDRLFRVPHPEGENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVL-RGYVEPSVAGDPADTRYQFERQ 599 (851)
T ss_dssp EECCSBSSSCTTCCC----------------------------CGGGGBCTTSEEEE-EEEECGGGGGSCTTCEEEETTT
T ss_pred ecccccCCCCcccccccccccccccccccccccccccccccCccHHHhcCCccceee-eeEEchhhhhCCCCCEEEEEEe
Confidence 9999999999975 3689999999999998 5899999999999999999999
Q ss_pred eeEEEec------CCCCCCeeEeeecCCCCCCCCC
Q 004119 743 GYFAVDK------DSTPEKLVFNRTVTLKDSFPKG 771 (773)
Q Consensus 743 Gyf~vD~------~~~~~~~v~n~~v~lk~~~~k~ 771 (773)
||||||+ ||+++++||||||+||++|+|+
T Consensus 600 Gyf~~D~~~~~~~~~~~~~~vfnr~v~lk~~~~~~ 634 (851)
T 2hz7_A 600 GYFWRDPVELERVDSREDALVFGRIITLKDTWGKQ 634 (851)
T ss_dssp EEEEECHHHHHCC------CEEEEEECSSCCC---
T ss_pred eEEEEccCCCccCCCCCCceEEEeecccccchhhc
Confidence 9999996 8999999999999999999984
No 3
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=3e-120 Score=1030.46 Aligned_cols=454 Identities=27% Similarity=0.439 Sum_probs=411.7
Q ss_pred hhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCch
Q 004119 245 EVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSD 324 (773)
Q Consensus 245 ~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~~~~qSd 324 (773)
..++|+|+|||||||||||||||||||++||++||+|||+|+||||||||+|+.++|+++|++||+|||+.||+++|||+
T Consensus 91 ~~~~g~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~~~~qSd 170 (553)
T 3aii_A 91 AGVKGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDETVIQSD 170 (553)
T ss_dssp SSCCSCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSEEEEGGG
T ss_pred CCCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCCCccccc
Confidence 34468899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCc
Q 004119 325 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 404 (773)
Q Consensus 325 ~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~ 404 (773)
||+.|+++|++||++|+||+|+||+++|++.|+.+++|+||+++++|++.+|++|++| .+|+++||+|+++.+++.++
T Consensus 171 r~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G--~~g~~~lR~k~d~~~~n~~~ 248 (553)
T 3aii_A 171 RMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEM--KEGSAVVRVKTDLNHPNPAI 248 (553)
T ss_dssp GHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGS--CTTSCEEEECCCTTCSSGGG
T ss_pred CHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcC--CcCceEEEEEcccccCCCCC
Confidence 9999999999999999999999999999999988899999999999999999999999 56789999999999899999
Q ss_pred CccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCceeeeeeccCCCc
Q 004119 405 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNT 484 (773)
Q Consensus 405 ~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~Ln~~g~ 484 (773)
+|||+||+...+||+||++|+||||||||||||||+|||||||||.||++|+++|.||+++||++.|.||||++|+++|+
T Consensus 249 ~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L~~~g~ 328 (553)
T 3aii_A 249 RDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDV 328 (553)
T ss_dssp TTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCBC----
T ss_pred CCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEEecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhhhcCCCceeeEe
Q 004119 485 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 564 (773)
Q Consensus 485 kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~ 564 (773)
|||||+++++|++|+|+||||||++||++||++||+|+||++||+++||++++..++++.|++++|+.+++.+||+|+|+
T Consensus 329 KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r~~l~~~a~R~~~V~ 408 (553)
T 3aii_A 329 ALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFAA 408 (553)
T ss_dssp ---CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHHHHHTTTCEEECEEE
T ss_pred eechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHHHHhhccChhhhhcc
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred cceeEEEEeCCCCceeeeecccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeeeeeEEEeEe
Q 004119 565 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 644 (773)
Q Consensus 565 dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~rl~~g~~v~l~~~~~i~~~~~ 644 (773)
||+||+|+|+|.. +.+++|+||+ +|++|+|+|+|+++||||++||+ + +.|+|+++|||+|+++
T Consensus 409 ~p~kv~i~n~~~~--~~~~~p~hp~---~~~~G~r~v~~~~~i~ie~~D~~-----------~-~~vrL~~~~~i~~~~~ 471 (553)
T 3aii_A 409 DPVKLEVVGLPGP--VRVERPLHPD---HPEIGNRVLELRGEVYLPGDDLG-----------E-GPLRLIDAVNVIYSGG 471 (553)
T ss_dssp SEEEEEEETCCSC--EEEEEESCTT---CGGGCEEEEEESSEEEEECTTCC-----------S-EEEEETTTEEEEEETT
T ss_pred CcEEEEEeCCCCc--eEEEecCCCC---CCcCccEEEEECCEEEEEcccCC-----------c-CceeecCEEEEEEEEE
Confidence 9999999999832 5789999998 79999999999999999999996 4 7889999999999874
Q ss_pred eecCCCCCEEEEEEEEcCCC---CCCCC-eeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeec
Q 004119 645 ILSDDKETILHIRAEYDPSK---KTKPK-GVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIP 720 (773)
Q Consensus 645 ~~~~~~g~v~e~~~~~~~~~---~~K~k-~~I~Wv~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~l~~iN~~S~~v~~ 720 (773)
. |+|++.. .+|+| ++|||||+ .++++|+||. |++ . +.
T Consensus 472 ~------------~~~~~~~~~~~~k~k~~~i~Wv~~----~~~~~~~~~~---------~~~------------~-~~- 512 (553)
T 3aii_A 472 E------------LRYHSEGIEEARELGASMIHWVPA----ESALEAEVIM---------PDA------------S-RV- 512 (553)
T ss_dssp E------------EEEEECSHHHHHHHTCEEECCEEG----GGCEEEEEEC---------TTS------------C-EE-
T ss_pred E------------EEEeCCchhhcccCCCCEEEEccC----CCceEEEEEC---------CCC------------c-EE-
Confidence 3 6777643 25677 89999997 4578898884 321 1 33
Q ss_pred ceEeccccccCCCCCeEEEEEeeeEEEecCCCCCCeeE
Q 004119 721 EAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVF 758 (773)
Q Consensus 721 ~~~~e~~~~~~~~~~~~QfeR~Gyf~vD~~~~~~~~v~ 758 (773)
.|++||++.++++|++|||||.||||||+++++ +||
T Consensus 513 ~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~--~~~ 548 (553)
T 3aii_A 513 RGVIEADASELEVDDVVQLERFGFARLDSAGPG--MVF 548 (553)
T ss_dssp EEEECGGGGGCCTTCEEEETTTEEEEEEECSSS--EEE
T ss_pred EEEEchhHhcCCCCCEEEEEEeEEEEEeeCCCc--EEE
Confidence 689999999999999999999999999987544 554
No 4
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=100.00 E-value=5.4e-76 Score=671.02 Aligned_cols=312 Identities=21% Similarity=0.250 Sum_probs=273.7
Q ss_pred HHHHHHhhhhcC--CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCC
Q 004119 237 KEVLDKHLEVTG--GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGW 314 (773)
Q Consensus 237 ~~~~~~h~~~~~--g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi 314 (773)
|-.++.|.+..+ ..|||||||||||+|||||||||++||+|||++||+|+|||||||++|+.++|+++|+++|+||||
T Consensus 9 ~g~~~~~~~~p~~~~~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl 88 (512)
T 4gri_A 9 MGTLEAQTQGPGSMLSTRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGI 88 (512)
T ss_dssp ---------------CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTC
T ss_pred ccchhhcccCCCCCCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCC
Confidence 334444544433 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC---------cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHHhHHHH
Q 004119 315 EPFK---------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFE 377 (773)
Q Consensus 315 ~pd~---------~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~f~ 377 (773)
+||+ +|+||+|++.|+++|++|+++|+||+|+||++|+++.|+ ++|++.||+++.++..
T Consensus 89 ~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~---- 164 (512)
T 4gri_A 89 SFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVE---- 164 (512)
T ss_dssp CCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHH----
T ss_pred CCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhh----
Confidence 9996 469999999999999999999999999999999998775 4688999999886532
Q ss_pred HhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCc----cccccccccccccccccCCcceeecCcccc
Q 004119 378 DMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK----WCIYPSYDYAHCIVDSIENITHSLCTLEFE 453 (773)
Q Consensus 378 ~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~----~~~~PtY~fa~~VDD~~~gITHviRg~E~~ 453 (773)
.+....+++++|+|+++. ++..++|.|.+++.+..+...||. ++|+||||||||||||+|||||||||+||+
T Consensus 165 ---~~~~~~~~~~~R~k~~~~-~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l 240 (512)
T 4gri_A 165 ---NALIKKIKPVVRFKIPLE-GDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWV 240 (512)
T ss_dssp ---HHHHTTCCCEEEECCCSS-CEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGG
T ss_pred ---hhhhhhccceeeeccccc-CCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccc
Confidence 233344578999999864 577899999999998877777774 578999999999999999999999999999
Q ss_pred cchHHHHHHHHHhCCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhC
Q 004119 454 TRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 532 (773)
Q Consensus 454 ~~~~~q~~L~~aLg~~~P~~w~f~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG 532 (773)
+||++|.||+++|||..|.|.|++. ++.+|+|||||+++ .+|.++|+.||.|+||.|||+.||
T Consensus 241 ~sTp~q~~l~~alg~~~P~y~H~pli~~~~g~kLSKR~~~----------------~~v~~~~~~G~lPeAl~NyLalLG 304 (512)
T 4gri_A 241 SSGPLHVLLYKAFKWKPPIYCHLPMVMGNDGQKLSKRHGS----------------TALRQFIEDGYLPEAIINYVTLLG 304 (512)
T ss_dssp GGHHHHHHHHHHHTCCCCEEEEECCCBCTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHSS
T ss_pred cccHHHHHHHHHcCCCCCeEEecchhccccccccCccccc----------------ccHHHHHHcCCChHHHHHHHHHhC
Confidence 9999999999999999998777775 58899999999986 689999999999999999999999
Q ss_pred CCCCCccccHhHHHHHHHHhhhcCCCceeeEecceeEEEEe
Q 004119 533 ISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN 573 (773)
Q Consensus 533 ~s~~~~~~~~~~Le~~~r~~~~~~~~R~~av~dp~kl~i~N 573 (773)
||..+. -++++++++++.|....+++++++||+.||.|.|
T Consensus 305 ws~~~~-~Eifs~~eli~~Fdl~~v~ks~a~fD~~KL~~~N 344 (512)
T 4gri_A 305 WSYDDK-REFFSKNDLEQFFSIEKINKSPAIFDYHKLDFFN 344 (512)
T ss_dssp BCSSSS-CCCCCHHHHHHHCCGGGBCSSCCBCCHHHHHHHH
T ss_pred CCCccc-chhhhHHHHHHHHHhcCCCCCCccccHHHHHHHH
Confidence 998764 4677889999999999999999999999999988
No 5
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=100.00 E-value=1.1e-73 Score=647.48 Aligned_cols=294 Identities=23% Similarity=0.304 Sum_probs=265.5
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-cCCCchhHHH
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQE 328 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~-~~~qSd~~~~ 328 (773)
+|||||||||||+|||||||||++||++||++||+|+|||||||++|+.++|+++|+++|+||||+||+ +++||+|++.
T Consensus 1 ~v~~RFAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~ 80 (492)
T 2cfo_A 1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEGPYFQSDRLDL 80 (492)
T ss_dssp CCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHH
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCCCCccccCCHHH
Confidence 389999999999999999999999999999999999999999999999999999999999999999997 8999999999
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCC--
Q 004119 329 LYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ-- 398 (773)
Q Consensus 329 ~y~~a~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~-- 398 (773)
|++++++|+++|+||+||||+++|++.|+ ++|+++||++|.+|++ +.|.+|. ++++|+|++..
T Consensus 81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~---~~~~~g~----~~~iR~k~~~~~~ 153 (492)
T 2cfo_A 81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQA---AFEAAGR----TPVIRFKIEDDRQ 153 (492)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHH---HHHHTTC----CCEEEECCCTTCE
T ss_pred HHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHH---HHHhCCC----CceEEEEcCCCCc
Confidence 99999999999999999999999998764 3699999999998865 3455554 58999998742
Q ss_pred ------------CCCCCc-CccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHH
Q 004119 399 ------------NDNFNM-YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHA 465 (773)
Q Consensus 399 ------------~~~~~~-~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~a 465 (773)
.++.++ .|||+||... ++|.|+||||||||||||+|||||||||+||++|+++|.||+++
T Consensus 154 ~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~-------~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~a 226 (492)
T 2cfo_A 154 IEWQDLVRGRVSWQGADLGGDMVIARAAP-------RGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEA 226 (492)
T ss_dssp EEEEETTTEEEEEEGGGGCSSEEEECSCC-------TTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHH
T ss_pred eEEEecceeeeeecccccCCCeEEEEecC-------CCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHH
Confidence 245577 8999999732 23578999999999999999999999999999999999999999
Q ss_pred hCCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhH
Q 004119 466 LGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR 544 (773)
Q Consensus 466 Lg~~~P~~w~f~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~ 544 (773)
||++.|.+.|.+. +|.+|+|||||+++ .+|.+||++||+|+||+|||+.+||+.+....++.+
T Consensus 227 lg~~~P~~~H~plil~~~g~KLSKr~g~----------------~~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~ 290 (492)
T 2cfo_A 227 LGATPPNFAHTPLILNSTGQKLSKRDGV----------------TSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFT 290 (492)
T ss_dssp TTCCCCEEEEECCEECSSSSBCCTTSSC----------------CBHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCC
T ss_pred cCCCCceEEEeeeEECCCCCEecccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCCCccccccC
Confidence 9999997766676 79999999999997 589999999999999999999999997222236678
Q ss_pred HHHHHHHhhhcCCCceeeEecceeEEEEe
Q 004119 545 LEYHIREELNKTAPRTMVVLNPLKVVITN 573 (773)
Q Consensus 545 Le~~~r~~~~~~~~R~~av~dp~kl~i~N 573 (773)
++++++.|....+++.+++|||.||.|.|
T Consensus 291 ~~e~i~~f~~~~i~~~~~~~d~~kl~~~N 319 (492)
T 2cfo_A 291 LDLAAKHFSFERINKAGARFDWDKLNWLN 319 (492)
T ss_dssp HHHHHHHCCSTTBCSSCEECCHHHHHHHH
T ss_pred HHHHHhhcChhhcCccccccCHHHHHHHH
Confidence 89999999999999999999999999988
No 6
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=100.00 E-value=9.2e-74 Score=644.68 Aligned_cols=288 Identities=24% Similarity=0.335 Sum_probs=258.8
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCc---------C
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKI---------T 320 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~~---------~ 320 (773)
+|||||||||||+|||||||||++||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+. +
T Consensus 1 ~v~~RFaPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~ 80 (468)
T 1j09_A 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPY 80 (468)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCe
Confidence 3899999999999999999999999999999999999999999999999999999999999999999974 8
Q ss_pred CCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhc--cCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecC-
Q 004119 321 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK--KMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDM- 397 (773)
Q Consensus 321 ~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~--~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~- 397 (773)
+||+|++.|+++|++|+++|+||+|+||++++++.|+. +|+++||++|.+|+++ .|.+|. ++++|+|++.
T Consensus 81 ~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~---~~~~g~----~~~~R~k~~~~ 153 (468)
T 1j09_A 81 RQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEE---RARRGE----PHVIRLKVPRP 153 (468)
T ss_dssp BGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHH---HHHTTC----CCEEEECCCSS
T ss_pred eccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHH---HHhcCC----CceEEEecCCC
Confidence 99999999999999999999999999999999988763 7999999999998764 355443 5899999873
Q ss_pred -------------CCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHH
Q 004119 398 -------------QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 464 (773)
Q Consensus 398 -------------~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~ 464 (773)
..++..+.|+|++|. +|+||||||||||||+|||||||||.||++|+++|.||++
T Consensus 154 ~~~~~~D~~~G~~~~~~~~~~D~Vl~R~------------dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~ 221 (468)
T 1j09_A 154 GTTEVKDELRGVVVYDNQEIPDVVLLKS------------DGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYR 221 (468)
T ss_dssp CEEEEEETTTEEEEEEGGGSCCCEEECT------------TSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHH
T ss_pred CceEEEeccceeEeecccCCCCeEEEec------------CCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHH
Confidence 223344566666665 3699999999999999999999999999999999999999
Q ss_pred HhCCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHh
Q 004119 465 ALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 543 (773)
Q Consensus 465 aLg~~~P~~w~f~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~ 543 (773)
+||++.|.+.|++. +|.+|+|||||+++ .+|.+||++||+|+||+|||+.+||+..+. .++.
T Consensus 222 alg~~~p~~~h~~li~~~~g~klSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~~~~~~-~~~~ 284 (468)
T 1j09_A 222 AFGWEAPRFYHMPLLRNPDKTKISKRKSH----------------TSLDWYKAEGFLPEALRNYLCLMGFSMPDG-REIF 284 (468)
T ss_dssp HHTCCCCEEEEECCCBCTTSCBCCTTTSC----------------CBHHHHHHTTCCHHHHHHHHHHHSCCCTTC-CSCC
T ss_pred HcCCCCCeEEEeeeeeCCCCCccccccch----------------hhHHHHHHCCCCHHHHHHHHHHhccCCccc-ccCC
Confidence 99999996655555 58999999999997 489999999999999999999999997654 3455
Q ss_pred HHHHHHHHhhhcCCCceeeEecceeEEEEe
Q 004119 544 RLEYHIREELNKTAPRTMVVLNPLKVVITN 573 (773)
Q Consensus 544 ~Le~~~r~~~~~~~~R~~av~dp~kl~i~N 573 (773)
+++++++.|....+++.+++|||.||.|.|
T Consensus 285 ~~~el~~~f~~~~~~~~~~~~d~~kl~~~N 314 (468)
T 1j09_A 285 TLEEFIQAFTWERVSLGGPVFDLEKLRWMN 314 (468)
T ss_dssp CHHHHHHHCCGGGCCCSCCBCCHHHHHHHH
T ss_pred CHHHHHhhCChhhcCccccccChHHhhhhc
Confidence 689999999999999999999999999988
No 7
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=100.00 E-value=1.7e-73 Score=645.48 Aligned_cols=311 Identities=20% Similarity=0.265 Sum_probs=277.3
Q ss_pred cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC--------
Q 004119 247 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-------- 318 (773)
Q Consensus 247 ~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~-------- 318 (773)
++++|||||||||||+|||||+|||++||++||++||+|+|||||||++|+.++|+++|+++|+||||+||+
T Consensus 3 ~~~~vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~ 82 (498)
T 2ja2_A 3 ATETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPY 82 (498)
T ss_dssp SCCCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTT
T ss_pred CCCCeeEEECcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCC
Confidence 356799999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhh-------ccCCCCCCCCCHHHHhHHHHHhhcCcccCC-ce
Q 004119 319 -ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE-------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KA 389 (773)
Q Consensus 319 -~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~-------~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g-~~ 389 (773)
+++||+|++.|+++|++|+++|+||+|+||+++|++.|. ++|+++||+++.+|+++.+ .+| .+
T Consensus 83 ~~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~--------~~g~~~ 154 (498)
T 2ja2_A 83 GPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYL--------AEGRQP 154 (498)
T ss_dssp CCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHH--------HTTCCC
T ss_pred CCeeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhh--------ccCCCc
Confidence 899999999999999999999999999999999988762 5799999999999876522 234 57
Q ss_pred EEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-----ccccccccccccccccCCcceeecCcccccchHHHHHHHH
Q 004119 390 TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 464 (773)
Q Consensus 390 ~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~-----~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~ 464 (773)
++|+|++ .++..+.|.|.+++.+.++.. ++| +|+||||||||||||+|||||||||.||++++++|.+|++
T Consensus 155 ~iR~k~~--~~~~~~~D~v~G~i~~~~~~~--~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~ 230 (498)
T 2ja2_A 155 VVRLRMP--DDDLAWNDLVRGPVTFAAGSV--PDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQ 230 (498)
T ss_dssp EEEECCC--SSCEEEEETTTEEEEECTTCS--CCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHH
T ss_pred eEEEECC--CCceEEEecccceEeeccccc--CcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHH
Confidence 9999997 457889999999998877643 345 5799999999999999999999999999999999999999
Q ss_pred Hh-----CCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCc
Q 004119 465 AL-----GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS 538 (773)
Q Consensus 465 aL-----g~~~P~~w~f~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~ 538 (773)
+| |+..|.+.|++. +|.+|+|||||+++ .+|.+||++||+|+||++||+.|||+..+.
T Consensus 231 aL~~~g~g~~~P~~~h~plil~~~g~KLSKR~g~----------------~~l~~~r~~G~~peAl~~~l~~lG~s~~~~ 294 (498)
T 2ja2_A 231 ALIRIGVAERIPKFAHLPTVLGEGTKKLSKRDPQ----------------SNLFAHRDRGFIPEGLLNYLALLGWSIADD 294 (498)
T ss_dssp HHHHTTSCCCCCEEEEECCEECSSSSBCCTTSGG----------------GBHHHHHHHTCCHHHHHHHHHTSSCCSCSS
T ss_pred HHHhhcCCCCCCeEEEeeeeECCCCCcccccCCc----------------ccHHHHHhCCCCHHHHHHHHHHhCCCCCcc
Confidence 99 999996666655 68999999999997 589999999999999999999999998764
Q ss_pred cccHhHHHHHHHHhhhcCCCceeeEecceeEEEEe------CCCCceeeeeccc
Q 004119 539 LIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKR 586 (773)
Q Consensus 539 ~~~~~~Le~~~r~~~~~~~~R~~av~dp~kl~i~N------~~~~~~~~~~~p~ 586 (773)
.++.+++++++.|....+++.+++|||.||.|.| +|.+.+.....|+
T Consensus 295 -~e~~s~~eli~~f~~~~~~~~~a~fd~~kL~~~N~~~i~~~~~~~l~~~l~~~ 347 (498)
T 2ja2_A 295 -HDLFGLDEMVAAFDVADVNSSPARFDQKKADALNAEHIRMLDVGDFTVRLRDH 347 (498)
T ss_dssp -CCCCCHHHHHHHCCGGGCCCSCEECCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred -cccCCHHHHHhhCChhhcCccccccCHHHHHHhhHHHHHhcCHHHHHHHHHHH
Confidence 3566789999999999999999999999999998 5555444444443
No 8
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=100.00 E-value=2.1e-72 Score=633.77 Aligned_cols=301 Identities=23% Similarity=0.332 Sum_probs=253.6
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-cCCCchhH
Q 004119 248 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYF 326 (773)
Q Consensus 248 ~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~-~~~qSd~~ 326 (773)
.++|||||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+ +++||+|+
T Consensus 23 ~~~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~ 102 (490)
T 4g6z_A 23 TRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEGPYYQMQRM 102 (490)
T ss_dssp -CCCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCH
T ss_pred CCCceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCCCCcccccCH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999997 68999999
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHHhHHHHHhhcCcccCC-ceEEEEEecC
Q 004119 327 QELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDM 397 (773)
Q Consensus 327 ~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g-~~~lR~K~d~ 397 (773)
+.|++++++|+++|+||+||||++||++.|+ ++|+++||+++.++. . ...+| ++++|||++.
T Consensus 103 ~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~--------~-~~~~g~~~~~R~k~~~ 173 (490)
T 4g6z_A 103 DRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVL--------P-EPPAGVAPVLRFRNPL 173 (490)
T ss_dssp HHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCC--------C-CCCTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhh--------h-hhhcCCCceEEEecCC
Confidence 9999999999999999999999999998764 469999999985421 1 12334 5899999752
Q ss_pred --------------CCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHH
Q 004119 398 --------------QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLL 463 (773)
Q Consensus 398 --------------~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~ 463 (773)
..++..++|+|++|. + |+||||||||||||+|||||||||+||++|||+|.||+
T Consensus 174 ~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~-------D-----G~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~ 241 (490)
T 4g6z_A 174 TGTVAWDDAVKGRVEISNEELDDLVVARP-------D-----GTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINIL 241 (490)
T ss_dssp SSEEEEEETTTEEEEEEGGGCCCCEEECT-------T-----SCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHH
T ss_pred CCcEEEEEeeeeeeeeccccCCCeEEEee-------C-----CCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHH
Confidence 123445677777775 3 59999999999999999999999999999999999999
Q ss_pred HHhCCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccH
Q 004119 464 HALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRL 542 (773)
Q Consensus 464 ~aLg~~~P~~w~f~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~ 542 (773)
++|||..|.|.|.+. ++.+|+|||||++. .||.+||++||+|+||+|||+.|||+..+. ++
T Consensus 242 ~aLG~~~P~f~HlpLi~~~~g~KLSKR~g~----------------~sl~~~r~~G~~peal~n~l~~lG~s~~~~--e~ 303 (490)
T 4g6z_A 242 RALGGEVPVYAHLPTVLNEQGEKMSKRHGA----------------MSVMGYRDAGYLPEAVLNYLARLGWSHGDA--EI 303 (490)
T ss_dssp HHTTCCCCEEEEECCEECTTSSBCCTTTTC----------------CBHHHHHHTTCCHHHHHHHHHTSSBCCTTC--CC
T ss_pred HHcCCCCCeEEEecceeCCCCCcccCCCCC----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCCCc--cc
Confidence 999999996665554 47899999999986 699999999999999999999999998653 56
Q ss_pred hHHHHHHHHhhhcCCCceeeEecceeEEEEe------CCCCceeeeecccC
Q 004119 543 DRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 587 (773)
Q Consensus 543 ~~Le~~~r~~~~~~~~R~~av~dp~kl~i~N------~~~~~~~~~~~p~~ 587 (773)
.++++++..|....+++++++||+.||.|.| ++.+.+.....|++
T Consensus 304 ~s~~eli~~F~~~~~~~~~~~fd~~KL~~~N~~~i~~~~~~~l~~~~~~~l 354 (490)
T 4g6z_A 304 FTREQFVEWFDLEHLGKSPAQYDHNKLNWLNNHYIKEADDARLAGLAKPFF 354 (490)
T ss_dssp CCHHHHHHHCCGGGBCSSCEECCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCHHHHHhhCCHhhCCCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7889999999999999999999999999988 55554444444444
No 9
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=100.00 E-value=5.4e-70 Score=616.42 Aligned_cols=290 Identities=22% Similarity=0.319 Sum_probs=253.0
Q ss_pred hcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-------
Q 004119 246 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK------- 318 (773)
Q Consensus 246 ~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~------- 318 (773)
.+.++|||||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++++++|+++|+|||++||+
T Consensus 21 ~~~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~ 100 (488)
T 3afh_A 21 RCFELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGD 100 (488)
T ss_dssp ----CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCT
T ss_pred hcCCCceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCC
Confidence 3446799999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEec
Q 004119 319 --ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD 396 (773)
Q Consensus 319 --~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d 396 (773)
+++||+|++.|++++++|+++|+||+|+||++||++.+.+.|++. + +.+..|. ++++|+|++
T Consensus 101 ~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~------~------~~~~~G~----~~~iR~k~~ 164 (488)
T 3afh_A 101 FGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP------H------EYKEKGH----PVTIKFKVL 164 (488)
T ss_dssp TCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCC------H------HHHHTTC----CEEEEECCC
T ss_pred CCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCch------h------hHHhcCC----CceEEEECC
Confidence 489999999999999999999999999999999987644566654 1 1233332 589999987
Q ss_pred CCCCCCCcCccEEEEEecCCCCCCCCcc-----ccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCC
Q 004119 397 MQNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP 471 (773)
Q Consensus 397 ~~~~~~~~~D~V~~R~~~~~h~~~gd~~-----~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P 471 (773)
.++..+.|.|.+++.+..+.. ++| +|+||||||||||||+|||||||||+||++|+++|.||+++|||+.|
T Consensus 165 --~~~~~~~D~v~G~~~~~~~~~--~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P 240 (488)
T 3afh_A 165 --PGKTSFEDLLKGYMEFDNSTL--EDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAP 240 (488)
T ss_dssp --SSEEEEEETTTEEEEEEGGGS--CCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCC
T ss_pred --CCceeEEeccceeEeecCCCC--CCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCC
Confidence 445667777777776554321 233 47999999999999999999999999999999999999999999999
Q ss_pred ceeeeee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHH
Q 004119 472 YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 550 (773)
Q Consensus 472 ~~w~f~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r 550 (773)
.+.|++. +|.+|+|||||+++ .+|.+||++||+|+||+|||+.|||+..+. ++.+++++++
T Consensus 241 ~f~H~pli~~~~g~KLSKR~g~----------------~~l~~~r~~G~~peal~n~l~~lG~s~~~~--e~~s~~e~i~ 302 (488)
T 3afh_A 241 VFMHIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGD--EIFTIEEKLQ 302 (488)
T ss_dssp EEEEECCEECTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHTTCCCSSC--SCCCHHHHGG
T ss_pred eEEEEeeeeCCCCCcccCcCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCccc--ccCCHHHHHh
Confidence 6666665 48999999999997 589999999999999999999999997764 6677899999
Q ss_pred HhhhcCCCceeeEecceeEEEEe
Q 004119 551 EELNKTAPRTMVVLNPLKVVITN 573 (773)
Q Consensus 551 ~~~~~~~~R~~av~dp~kl~i~N 573 (773)
.|....++|.+++|||.||.|.|
T Consensus 303 ~f~~~~i~~~~~~fd~~kl~~~N 325 (488)
T 3afh_A 303 SFDPKDISNKGVIFDYQKLEWVN 325 (488)
T ss_dssp GCCGGGSCSSCEECCHHHHHHHH
T ss_pred hCChhhcCccccccChHHhhhcc
Confidence 99999999999999999999988
No 10
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-67 Score=606.15 Aligned_cols=300 Identities=21% Similarity=0.313 Sum_probs=255.4
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC---------c
Q 004119 249 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------I 319 (773)
Q Consensus 249 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~---------~ 319 (773)
++|+|||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++++++|+++|+|||++||+ +
T Consensus 128 ~~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp 207 (592)
T 3al0_C 128 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 207 (592)
T ss_dssp CCCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred CCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCC
Q 004119 320 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQN 399 (773)
Q Consensus 320 ~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~ 399 (773)
++||+|++.|++++++|+++|+||+|+||+++|++.+.+.|++. + +.+..|. ++++|+|++ .
T Consensus 208 ~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~------~------~~~~~g~----~~~iR~k~~--~ 269 (592)
T 3al0_C 208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP------H------EYKEKGH----PVTIKFKVL--P 269 (592)
T ss_dssp CBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCC------H------HHHHTTC----CEEEEECCC--S
T ss_pred eeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcH------H------HHhhcCC----CceEEEECC--C
Confidence 79999999999999999999999999999999976533455443 1 2233343 589999987 3
Q ss_pred CCCCcCccEEEEEecCCCCCCCCcc-----ccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCcee
Q 004119 400 DNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVW 474 (773)
Q Consensus 400 ~~~~~~D~V~~R~~~~~h~~~gd~~-----~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w 474 (773)
++..+.|.|.+++.+..+. . ++| +|+||||||||||||+|||||||||.||++|+++|.||+++|||+.|.+.
T Consensus 270 ~~~~~~D~v~G~~~~~~~~-~-~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~ 347 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNST-L-EDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFM 347 (592)
T ss_dssp SCCEECCTTTCSEECCSSS-S-CCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCC
T ss_pred CCceeeecccceeeecccc-C-CCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEE
Confidence 4455666666666544332 1 223 46999999999999999999999999999999999999999999999665
Q ss_pred eeee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhh
Q 004119 475 EYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 553 (773)
Q Consensus 475 ~f~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~ 553 (773)
|++. +|.+|+|||||+++ .+|.+||++||+|+||+|||+.|||+.... ++.+++++++.|.
T Consensus 348 hlpli~~~~g~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~~~--e~~s~~e~i~~f~ 409 (592)
T 3al0_C 348 HIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGD--EIFTIEEKLQSFD 409 (592)
T ss_dssp EECCCBCTTSSBCCTTTCS----------------SBHHHHHHTTCCHHHHHHHHTTTTBCCCSC--SCCCTTTTGGGCC
T ss_pred EeeeeeCCCCCcccccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCccc--ccCCHHHHHhhCC
Confidence 5555 48999999999997 589999999999999999999999998664 5667788999999
Q ss_pred hcCCCceeeEecceeEEEEe------CCCCceeeeeccc
Q 004119 554 NKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKR 586 (773)
Q Consensus 554 ~~~~~R~~av~dp~kl~i~N------~~~~~~~~~~~p~ 586 (773)
...++|.+++|||.||.|.| +|.+.+.....|+
T Consensus 410 ~~~i~~~~~~fd~~kl~~~N~~~i~~~~~~~l~~~~~~~ 448 (592)
T 3al0_C 410 PKDISNKGVIFDYQKLEWVNGKHMRRIDLEDLKREFIEW 448 (592)
T ss_dssp TTSBCSSCCBCCHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hhhcCcccceeCHHHHhhhhHHHhhcCCHHHHHHHHHHH
Confidence 99999999999999999988 4544444444443
No 11
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=100.00 E-value=5.4e-66 Score=583.96 Aligned_cols=301 Identities=23% Similarity=0.299 Sum_probs=261.9
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC---------cC
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------IT 320 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~---------~~ 320 (773)
-||+||||||||+|||||+|+|++||++||.+||+|+|||||||++|+.++++++|+++|+|||++||+ ++
T Consensus 13 vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y 92 (481)
T 2o5r_A 13 MVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPY 92 (481)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCC
T ss_pred EEEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCce
Confidence 479999999999999999999999999999999999999999999999999999999999999999996 48
Q ss_pred CCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCC--CCCCCHHHHhHHHHHhhcCcccCCceE
Q 004119 321 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSP--WRDRPIAESLKLFEDMRNGRIEEGKAT 390 (773)
Q Consensus 321 ~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~--~R~~s~ee~l~~f~~m~~G~~~~g~~~ 390 (773)
+||+|++.|+++|++|+++|+||+|+||++++++.|+ +.|++. ||+++.+|+.+ .|.+|. +++
T Consensus 93 ~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~---~~~~G~----~~~ 165 (481)
T 2o5r_A 93 RQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRRE---YEEKGL----RPA 165 (481)
T ss_dssp BGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHH---HHHTTC----CCE
T ss_pred eeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHH---HHhcCC----cce
Confidence 9999999999999999999999999999999988764 368888 99999988754 355554 579
Q ss_pred EEEEecC-------------CCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchH
Q 004119 391 LRMKQDM-------------QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRA 457 (773)
Q Consensus 391 lR~K~d~-------------~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~ 457 (773)
+|+|++. ...+..+.|+|++|. +|+||||||||||||+|||||||||.||++|++
T Consensus 166 iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~Rs------------DG~ptY~~a~vvDD~~~githvirG~D~~~~t~ 233 (481)
T 2o5r_A 166 VFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRS------------NGLPTYNFACVVDDMLMEITHVIRGDDHLSNTL 233 (481)
T ss_dssp EEECCCSSCEEEEETTTEEEEECTTSSCBEEEECT------------TSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred EEEEcCCCceEEEecccceeEeccccCCCeEEEcc------------CCCcchhhHHHHHHHhCCCCeEEEChhHHHhHH
Confidence 9999863 112344556666665 369999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCC
Q 004119 458 SYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 536 (773)
Q Consensus 458 ~q~~L~~aLg~~~P~~w~f~~-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~ 536 (773)
+|.||+++||+..|.+.|++. ++.+|+|||||+++ .+|.+|+++||+|+||++|++.+||+..
T Consensus 234 ~q~~l~~aLG~~~p~~~H~plil~~~G~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~ 297 (481)
T 2o5r_A 234 RQLALYEAFEKAPPVFAHVSTILGPDGKKLSKRHGA----------------TSVEAFRDMGYLPEALVNYLALLGWSHP 297 (481)
T ss_dssp HHHHHHHHTTCCCCEEEEECCEECTTSSBCCGGGSC----------------CBHHHHHHHTCCHHHHHHHHHTSSBCCT
T ss_pred HHHHHHHHcCCCCCeEEEEeeEECCCCCcccCcCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999997666665 68999999999997 4899999999999999999999999974
Q ss_pred CccccHhHHHHHHHHhhhcCCCceeeEecceeEEEEe------CCCCceeeeeccc
Q 004119 537 DSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKR 586 (773)
Q Consensus 537 ~~~~~~~~Le~~~r~~~~~~~~R~~av~dp~kl~i~N------~~~~~~~~~~~p~ 586 (773)
.. -++.+++++++.|+...+++.+++|||.|+.+.| +|.+.+.....|+
T Consensus 298 ~~-~e~~~~~e~i~~f~l~~~~~~~~~fd~~kl~~~n~~~i~~~~~~~l~~~~~~~ 352 (481)
T 2o5r_A 298 EG-KELLTLEELISSFSLDRLSPNPAIFDPQKLKWMNGYYLRNMPIEKLAELAKPF 352 (481)
T ss_dssp TC-CCCCCHHHHHHHCCGGGBCSSCEECCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred cc-cccCCHHHHHHhCChhhCCccCcccChHHhhhhCHHHHHhcCHHHHHHHHHHH
Confidence 32 2455678999999999999999999999999887 5554443334443
No 12
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=100.00 E-value=7.3e-64 Score=535.51 Aligned_cols=268 Identities=19% Similarity=0.223 Sum_probs=219.6
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-cCCCchhH
Q 004119 248 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYF 326 (773)
Q Consensus 248 ~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r~~~e~~~~I~edL~wLGi~pd~-~~~qSd~~ 326 (773)
.+.|+|||||||||+|||||+|+|++||++||+++|+|+|||||||++|+.++|+++|+++|+|||++||+ +++||+|+
T Consensus 3 ~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~~~~~qSer~ 82 (298)
T 1nzj_A 3 DTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRH 82 (298)
T ss_dssp -CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSCCEEGGGCH
T ss_pred CCCeEEEECcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCCCCeeeeCCH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCC--------
Q 004119 327 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ-------- 398 (773)
Q Consensus 327 ~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~-------- 398 (773)
+.|++++++|+++|+||+|+||+++|++.. ..|++.||+++.+ | ..+++|+|++..
T Consensus 83 ~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~-~~Y~g~cr~~~~~-----------g----~~~~~R~r~~~~~~~f~D~~ 146 (298)
T 1nzj_A 83 DAYREALAWLHEQGLSYYCTCTRARIQSIG-GIYDGHCRVLHHG-----------P----DNAAVRIRQQHPVTQFTDQL 146 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCHHHHHHTT-SSCCCTTTTTCCC-----------S----TTCEEEECCSSCCCEEEETT
T ss_pred HHHHHHHHHHHHcCCcccCcCCHHHHHHcC-CCCCCccccCCcC-----------C----CCCcEEEecCCcccceehhh
Confidence 999999999999999999999999998764 3799999988653 1 146889987621
Q ss_pred -----CC-CCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhCCCCCc
Q 004119 399 -----ND-NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPY 472 (773)
Q Consensus 399 -----~~-~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P~ 472 (773)
.. +.++.|||+||. + |+|||||||+|||++|||||||||.||++|+++|.+|+++||++.|.
T Consensus 147 ~G~~~~~~~~~~~D~VL~R~-------d-----G~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~ 214 (298)
T 1nzj_A 147 RGIIHADEKLAREDFIIHRR-------D-----GLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPD 214 (298)
T ss_dssp TEEEECCHHHHHSCCEEECT-------T-----SCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCE
T ss_pred CcccccCcccCCCCEEEECC-------C-----CCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCe
Confidence 01 135677888875 3 59999999999999999999999999999999999999999999999
Q ss_pred eeeeeec-cCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCc--cccHhH-HHHH
Q 004119 473 VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS--LIRLDR-LEYH 548 (773)
Q Consensus 473 ~w~f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~--~~~~~~-Le~~ 548 (773)
++|++++ |.+|+|||||+++..|++. +|+ .++.+|++.+||+.... .++.+. |+++
T Consensus 215 ~~H~pll~~~~g~KLSKR~g~~~v~~~------~~~--------------~~~~~~l~~lG~~~~~~~~~~~~~~~l~~~ 274 (298)
T 1nzj_A 215 YIHLPLALNPQGAKLSKQNHAPALPKG------DPR--------------PVLIAALQFLGQQAEAHWQDFSVEQILQSA 274 (298)
T ss_dssp EEEECBCCC-------------CCCSS------CCH--------------HHHHHHHHHTTCCCCSCGGGSCHHHHHHHH
T ss_pred EEEeeeeECCCCCcccccCCccChhcC------Ccc--------------HHHHHHHHHcCCCCCcccccCCHHHHHHHH
Confidence 9988886 9999999999999766542 332 45788999999998753 355443 6789
Q ss_pred HHHhhhcCCCceeeE
Q 004119 549 IREELNKTAPRTMVV 563 (773)
Q Consensus 549 ~r~~~~~~~~R~~av 563 (773)
++.|....+++.+.+
T Consensus 275 ~~~f~~~~~~~~~~~ 289 (298)
T 1nzj_A 275 VKNWRLTAVPESAIV 289 (298)
T ss_dssp HHTCCGGGSCCCSBC
T ss_pred HHhCCHhhCCCCCCc
Confidence 999999999998753
No 13
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-47 Score=378.81 Aligned_cols=158 Identities=31% Similarity=0.558 Sum_probs=152.8
Q ss_pred ChhHHHHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh------------------------c
Q 004119 8 DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT------------------------I 63 (773)
Q Consensus 8 ~~~~~~~~f~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~------------------------l 63 (773)
+.+++++||++|||+|+||+||+||++++++|..+|++++...+||+++|+|||+ |
T Consensus 3 ~~~~l~~lf~~iGL~e~kaket~kN~kls~~L~~~i~ea~~~~~~dk~~g~LLy~latk~k~~~~~~r~~l~~~I~~gkl 82 (187)
T 3tl4_X 3 SVEELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKETPSDYQWNKSTRALVHNLASFVKGTDLPKSELIVNGIINGDL 82 (187)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHTTSHHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTSC
T ss_pred chHHHHHHHHHcCCChhHHHHHHhCHHHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhccCccchhHHHHHHHHHhccC
Confidence 3488999999999999999999999999999999999999877899999999999 9
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHh--hCCC
Q 004119 64 KTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRK--RLPW 141 (773)
Q Consensus 64 ks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~--~LkW 141 (773)
+|++||+||++|++++ .+++|.++||++|||||+||+|||+++|.+||++|+++|+++||+ |+|+||++||+ .|||
T Consensus 83 kt~~Qv~AAl~yl~~~-~~~id~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~i~~~RY~-~~g~ll~~vr~~p~LkW 160 (187)
T 3tl4_X 83 KTSLQVDAAFKYVKAN-GEASTKMGMNENSGVGIEITEDQVRNYVMQYIQENKERILTERYK-LVPGIFADVKNLKELKW 160 (187)
T ss_dssp CSHHHHHHHHHHHHHH-GGGCCHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTHHHHHHHGGG-GHHHHHHHHHTCGGGTT
T ss_pred CcHHHHHHHHHHHHhC-CCCCCHHHHHHHCCCCeEeCHHHHHHHHHHHHHHhHHHHHHhccc-cHHHHHHHHhcccCCCC
Confidence 9999999999999988 488999999999999999999999999999999999999999999 99999999999 7999
Q ss_pred CChhhHHHHHHHHHHHhcCCCchhhh
Q 004119 142 ADPKIVKQLIDARMYELLGERTAADI 167 (773)
Q Consensus 142 Ad~k~vK~~vd~~~~~llgpk~~~d~ 167 (773)
|||+.||++||++|+++|||||++|+
T Consensus 161 Ad~~~vK~~vD~~~l~lLGPKte~D~ 186 (187)
T 3tl4_X 161 ADPRSFKPIIDQEVLKLLGPKDERDL 186 (187)
T ss_dssp SCTTSHHHHHHHHHHHHHCSCCGGGC
T ss_pred CCHHHHHHHHHHHHHHHcCCcccccc
Confidence 99999999999999999999999985
No 14
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.95 E-value=1.6e-29 Score=289.56 Aligned_cols=275 Identities=14% Similarity=0.103 Sum_probs=175.0
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHH-----HHcCCEEEEEeecCCcccch--------------------------
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLA-----KERGGYCYLRYDDTNPEAEK-------------------------- 298 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~A-----r~~~G~~iLRidDTDp~r~~-------------------------- 298 (773)
.+++.-+|||||++||||+|++++|+.+| ++++|.|++||||||+.|..
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 45555599999999999999999998886 46899999999999954433
Q ss_pred ----HHHHHHHHHHHHHcCCCCCCcCCCch-hHH-HHHHHHHHHHHcC-CcccCCCCHHHHH--------HhhhccCCCC
Q 004119 299 ----KEYIDHIEEIVQWMGWEPFKITYTSD-YFQ-ELYELAVELIRRG-HAYVDHQTPEEIK--------EYREKKMNSP 363 (773)
Q Consensus 299 ----~e~~~~I~edL~wLGi~pd~~~~qSd-~~~-~~y~~a~~LI~~G-~AY~C~cs~eel~--------~~R~~~~~~~ 363 (773)
+++.+.|+++|+||||.||.. +||+ |.+ .|.+++++|+++| .+|.|.+....+. -.+..+|...
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~~~~~~~~~~~~ 179 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPE 179 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTTCCSEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccCCceeccccchh
Confidence 459999999999999998876 9999 988 8899999999999 6665542111000 0000123334
Q ss_pred CCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccE--EEEEecCCCCCCCCccccccccccccccccccC
Q 004119 364 WRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI--AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE 441 (773)
Q Consensus 364 ~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V--~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~ 441 (773)
|+..+.+ . .... ..++|++.. .+...+.|++ .+|.. |.-. +++|+|+|+++|| .|
T Consensus 180 ~~~~~~~--~---------~~~~-~~~~~f~~~--~g~~~~~d~~~G~g~~~------w~~d-~~~~~~~l~~~vd--~~ 236 (523)
T 1irx_A 180 HRREAEI--I---------EWDG-GWKVKYKCP--EGHEGWVDIRSGNVKLR------WRVD-WPMRWSHFGVDFE--PA 236 (523)
T ss_dssp TCCEECE--E---------EECS-SSCEEECCS--SSCCCEECTTSSCEEEC------HHHH-HHHHHHHSCCCBC--CE
T ss_pred hCCcccc--c---------ccCC-CCceeeeec--CCCccccCCcCCCCCCC------CCcc-hHhhHHHcCCCCc--CC
Confidence 4433211 0 0001 123455431 1222222322 11110 1001 2567778887776 88
Q ss_pred CcceeecC--cccccchHHHHHHH-HHhCCCCCceeeeeeccCC--CceecccccccccccCccCCCCCcccccHHHHHH
Q 004119 442 NITHSLCT--LEFETRRASYFWLL-HALGLYQPYVWEYSRLNVS--NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 516 (773)
Q Consensus 442 gITHviRg--~E~~~~~~~q~~L~-~aLg~~~P~~w~f~~Ln~~--g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrr 516 (773)
|++|+.+| .+|. .+++ .+||+..|.+.|++++..+ |.|||||+|+ ..|+..+++
T Consensus 237 G~Dh~~~h~s~~~~------~~i~~~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn---------------~i~~~~~~~ 295 (523)
T 1irx_A 237 GKDHLVAGSSYDTG------KEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGN---------------VILLSDLYE 295 (523)
T ss_dssp EHHHHSTTSHHHHH------HHHHHHHHCCCCCBCCEECCEEESCC---------C---------------CCCHHHHHT
T ss_pred CcCccCCCcchhhH------HHHHHHHhCCCCCeEEEEEEEEeCCCCCCCCCcCCC---------------CCCHHHHHH
Confidence 99999876 3333 3333 6999988866666877655 9999999998 358999999
Q ss_pred cCCCHHHHHHHHHHhCCCCCCccccHh-HHHHHHHHhhhcCCCceeeEecce--eEEEEe
Q 004119 517 RGVTSTSINAFVQGIGISRSDSLIRLD-RLEYHIREELNKTAPRTMVVLNPL--KVVITN 573 (773)
Q Consensus 517 rG~~PeAI~~fl~~lG~s~~~~~~~~~-~Le~~~r~~~~~~~~R~~av~dp~--kl~i~N 573 (773)
+ |.|+||++||++.|+... ..++++ .|.++.+.|. ++.+..+.+++. |+.|.|
T Consensus 296 ~-~~pdalR~~l~~~~~~~~-~~fs~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~n 351 (523)
T 1irx_A 296 V-LEPGLVRFIYARHRPNKE-IKIDLGLGILNLYDEFE--KVERIYFGVEGGKGDDEELR 351 (523)
T ss_dssp T-SCHHHHHHHHHSSCTTSC-EEECCSTTHHHHHHHHH--HHHHHHTTSCC-----CHHH
T ss_pred H-cCHHHHHHHHHhcCCCCC-ceeCcchhHHHHHHHHH--HHHHHHhcccccchhhhhhc
Confidence 8 999999999999898654 457777 7888777663 344455555654 466666
No 15
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.93 E-value=1.8e-25 Score=252.38 Aligned_cols=260 Identities=15% Similarity=0.139 Sum_probs=191.5
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcc---c----------chHHHHHHHHHH
Q 004119 248 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE---A----------EKKEYIDHIEEI 308 (773)
Q Consensus 248 ~g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~---r----------~~~e~~~~I~ed 308 (773)
+|+|..-+ +|+|+|++||||+|++++.+.+||. |++.|+.+++|+|.. + -...|.+.+.++
T Consensus 20 ~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~ 99 (461)
T 1li5_A 20 AGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKD 99 (461)
T ss_dssp TTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45443333 7888899999999999999999994 667999999999963 1 156899999999
Q ss_pred HHHcCCCC-CCcCCCchhHHHHHHHHHHHHHcCCcccC------CCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhc
Q 004119 309 VQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVD------HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 381 (773)
Q Consensus 309 L~wLGi~p-d~~~~qSd~~~~~y~~a~~LI~~G~AY~C------~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~ 381 (773)
++|||+.+ +..+++|+|.+.+.+++++|+++|+||.+ +|..+ + ..|...|. +++ ++|..
T Consensus 100 ~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~----~--~~yg~lsg-~~~-------~~l~~ 165 (461)
T 1li5_A 100 FDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT----D--PTYGVLSR-QDL-------DQLQA 165 (461)
T ss_dssp HHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG----C--TTTTTTTT-C--------------
T ss_pred HHHcCCCCCcccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEeccc----c--cccccccC-CCH-------HHhhc
Confidence 99999996 77789999999999999999999999987 66543 1 23443343 222 23433
Q ss_pred CcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-ccccccccccccc-cccCCcceeec--Ccc----cc
Q 004119 382 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCIV-DSIENITHSLC--TLE----FE 453 (773)
Q Consensus 382 G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~-~~~PtY~fa~~VD-D~~~gITHviR--g~E----~~ 453 (773)
|. |+..+ ....+..||++||...++++.|.++| .++|+||.+|+.. ....|.++.|+ |.| |+
T Consensus 166 g~--------rv~~~--~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~ 235 (461)
T 1li5_A 166 GA--------RVDVV--DDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHH 235 (461)
T ss_dssp -------------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHH
T ss_pred CC--------cccch--hcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHH
Confidence 32 22222 22344589999998777788888899 7899999999752 44456788888 888 55
Q ss_pred cchHHHHHHHHHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhC
Q 004119 454 TRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 532 (773)
Q Consensus 454 ~~~~~q~~L~~aLg~~~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG 532 (773)
.+.+.|... ++|.+.|.+|.| ++++++|+|||||+|+ ..++..+.++ |.|++||.|+++..
T Consensus 236 ~~~~aq~~a--~~g~~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~dll~~-~g~dalR~~ll~~~ 297 (461)
T 1li5_A 236 ENEIAQSTC--AHDGQYVNYWMHSGMVMVDREKMSKSLGN---------------FFTVRDVLKY-YDAETVRYFLMSGH 297 (461)
T ss_dssp HHHHHHHHH--HSSSCCEEEECCBCCEEETTBCCCGGGTC---------------CCBHHHHHTT-SCHHHHHHHHHSSC
T ss_pred HHHHHHHHH--hcCCCCCcEEEEeeEEEECCeEccccCCC---------------ccChhHHhhh-CCHHHHHHHHHcCC
Confidence 566655322 258877888887 7899999999999998 5789999987 99999999999854
Q ss_pred CCCCCccccHhHHHHHHH
Q 004119 533 ISRSDSLIRLDRLEYHIR 550 (773)
Q Consensus 533 ~s~~~~~~~~~~Le~~~r 550 (773)
++ .+..++++.|.+..+
T Consensus 298 ~~-~~~~fs~~~l~~~~~ 314 (461)
T 1li5_A 298 YR-SQLNYSEENLKQARA 314 (461)
T ss_dssp TT-SCEEECHHHHHHHHH
T ss_pred cC-CCCCCCHHHHHHHHH
Confidence 43 344688887776543
No 16
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.93 E-value=9.7e-26 Score=253.60 Aligned_cols=248 Identities=13% Similarity=0.125 Sum_probs=185.3
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCCCCC
Q 004119 256 PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEPF 317 (773)
Q Consensus 256 aPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~-------------r~~~e~~~~I~edL~wLGi~pd 317 (773)
+|+|+|++||||||++++.+.++|. |+..|+.++||+|.. ....+|++.+.+++++||+.++
T Consensus 32 GPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d 111 (462)
T 3tqo_A 32 GMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSP 111 (462)
T ss_dssp CCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8999999999999999999888883 667899999999963 2256899999999999999975
Q ss_pred C-cCCCchhHHHHHHHHHHHHHcCCccc------CCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceE
Q 004119 318 K-ITYTSDYFQELYELAVELIRRGHAYV------DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 390 (773)
Q Consensus 318 ~-~~~qSd~~~~~y~~a~~LI~~G~AY~------C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~ 390 (773)
. .+++|+|.+.+.+++++|+++|+||. +||.... +.|+..++ ++.+ +|..|.
T Consensus 112 ~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~------~~yg~Ls~-~~~~-------~~~~g~------- 170 (462)
T 3tqo_A 112 DQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF------KDYGKLSH-RHLD-------ELQAGA------- 170 (462)
T ss_dssp SBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC------TTTTTTTT-CSCC--------------------
T ss_pred ccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc------cccccccC-CChH-------HhhccC-------
Confidence 4 56999999999999999999999994 4564321 23433222 2222 233332
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCcccccchHHH
Q 004119 391 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASY 459 (773)
Q Consensus 391 lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~gITHviRg~E~~~~~~~q 459 (773)
|+..+ ..+.+..||++||...+++|.|.++| .|+|+||+.|+ +|-|..|+.+++ .|+.|...|
T Consensus 171 -r~~~~--~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~F---pHheneiaq 244 (462)
T 3tqo_A 171 -RVEVS--DSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKF---PHHENEIAQ 244 (462)
T ss_dssp ---------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTT---THHHHHHHH
T ss_pred -ccccc--cccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEcccccccc---HHHHhHHHH
Confidence 33222 34566789999999999999999999 99999999996 444444444444 466666666
Q ss_pred HHHHHHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCc
Q 004119 460 FWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS 538 (773)
Q Consensus 460 ~~L~~aLg~~~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~ 538 (773)
.. .+.|.+.+.+|.| ++++.+|+|||||+|| +.|++.+.+. |.|++||.|+++.++..+ .
T Consensus 245 s~--a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN---------------~i~~~dll~~-~g~dalR~~lls~~yr~~-l 305 (462)
T 3tqo_A 245 SE--AGEEKPFVKLWMHAGLLEINKEKMSKSLGN---------------IISIREALKE-SDVEVLRYFLLSGHYRNP-L 305 (462)
T ss_dssp HH--HHHSSCCEEEEEEECCEEETTEECCTTTTC---------------CCBHHHHHHH-SCHHHHHHHHHHSCTTSC-E
T ss_pred HH--HHcCCCcceEEEEccEEecCCcCccccCCC---------------cccHHHHHhh-cChHHhhhhhccCCCCCC-c
Confidence 32 2347667889988 5789999999999998 5799999886 999999999998877554 3
Q ss_pred cccHhHHHHHH
Q 004119 539 LIRLDRLEYHI 549 (773)
Q Consensus 539 ~~~~~~Le~~~ 549 (773)
.++.+.|++..
T Consensus 306 ~fs~~~l~~a~ 316 (462)
T 3tqo_A 306 SYSKENLENGR 316 (462)
T ss_dssp EECHHHHHHHH
T ss_pred CcCHHHHHHHH
Confidence 57777777653
No 17
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.90 E-value=2.5e-23 Score=235.43 Aligned_cols=252 Identities=15% Similarity=0.109 Sum_probs=169.1
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecC----------Ccc-------------cchHHHHHHHHH
Q 004119 256 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPE-------------AEKKEYIDHIEE 307 (773)
Q Consensus 256 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDT----------Dp~-------------r~~~e~~~~I~e 307 (773)
+|+|+|++||||||++++.+.++| .|...|+..|+|+ |.. .-...|++.+.+
T Consensus 49 gPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~~f~~ 128 (501)
T 3sp1_A 49 GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFN 128 (501)
T ss_dssp CCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHHHHHH
T ss_pred CCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 788889999999999999888887 4677899999998 422 125689999999
Q ss_pred HHHHcCCCCCC-cCCCchhHHHHHHHHHHHHHcCCccc-----CCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhc
Q 004119 308 IVQWMGWEPFK-ITYTSDYFQELYELAVELIRRGHAYV-----DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 381 (773)
Q Consensus 308 dL~wLGi~pd~-~~~qSd~~~~~y~~a~~LI~~G~AY~-----C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~ 381 (773)
+++.||+.++. .+..++|.+.+.++.++|+++|+||. .||... + +.|. .+|.. ++ -++|..
T Consensus 129 d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~----f--~~yG----~ls~~-~~--~~~~~~ 195 (501)
T 3sp1_A 129 DCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC----F--KSYG----EMAGI-DL--IDKDMT 195 (501)
T ss_dssp HHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG----C--TTTT----TTTC------------
T ss_pred HHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc----c--CCcc----ccCCC-Ch--hhhhcc
Confidence 99999998764 56789999999999999999999995 344332 1 2333 23221 11 024544
Q ss_pred CcccCCceEEEEEecCCCCCCCcCccEEEEE--ec-CCCCCCCCcc-cccccccccccc----------ccccCCcceee
Q 004119 382 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRI--KF-TPHPHAGDKW-CIYPSYDYAHCI----------VDSIENITHSL 447 (773)
Q Consensus 382 G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~--~~-~~h~~~gd~~-~~~PtY~fa~~V----------DD~~~gITHvi 447 (773)
|. |. +....+.+..||++|+. .. ...|.|.++| .|+|+||..|+. |-|..|+.+++
T Consensus 196 g~--------r~--~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~gG~DLif 265 (501)
T 3sp1_A 196 LP--------RV--DVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIG 265 (501)
T ss_dssp ------------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEEEEGGGTT
T ss_pred CC--------cc--CcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEeecccccc
Confidence 43 22 22234566799999987 22 3456799999 899999999853 55666666654
Q ss_pred cCcccccchHHHHHHHHHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHH
Q 004119 448 CTLEFETRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 526 (773)
Q Consensus 448 Rg~E~~~~~~~q~~L~~aLg~~~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~ 526 (773)
-|+.+.+.|.. -+.|-+.+.+|.| ++++++|+|||||.|| +.|+..+.++||.|+++|.
T Consensus 266 ---pHheneiAqs~--a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN---------------~it~~dll~~gyg~d~lR~ 325 (501)
T 3sp1_A 266 ---VHHINEIAIAE--CFLNKKWCDVFVHGEFLIMDYNKMSKSRGN---------------FITVKDLEDQNFSPLDFRY 325 (501)
T ss_dssp ---THHHHHHHHHH--HHHTSCCCSEEEEECCEECC-------------------------CCCHHHHHHTTCCHHHHHH
T ss_pred ---chHHHHHHHHH--HccCCCCCeEEEEeeeEeeCCeEccccCCC---------------cCCHHHHHhcCCCHHHHHH
Confidence 45666666532 1235566789998 8999999999999998 5799999999999999999
Q ss_pred HHHHhCCCCCCccccHhHHHHHHHH
Q 004119 527 FVQGIGISRSDSLIRLDRLEYHIRE 551 (773)
Q Consensus 527 fl~~lG~s~~~~~~~~~~Le~~~r~ 551 (773)
||++..+..+ ..++.+.|++..+.
T Consensus 326 ~lls~~yr~~-l~fs~~~l~~a~~~ 349 (501)
T 3sp1_A 326 LCLTSHYRNQ-LKFSLDNLQASKIA 349 (501)
T ss_dssp HHHTSCTTSC-EECCHHHHHHHHHH
T ss_pred HHHhccCCCC-CccCHHHHHHHHHh
Confidence 9998877544 35777777776554
No 18
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.90 E-value=3.2e-23 Score=231.10 Aligned_cols=259 Identities=15% Similarity=0.106 Sum_probs=177.6
Q ss_pred EeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCCC
Q 004119 254 RFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWE 315 (773)
Q Consensus 254 RFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~-------------r~~~e~~~~I~edL~wLGi~ 315 (773)
--+|+|+|++||||+|++++.+.+||. |+..|+..+||.+.. .....|.+.|.+++++||+.
T Consensus 44 ~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~ 123 (414)
T 3c8z_A 44 VCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVL 123 (414)
T ss_dssp ECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 448999999999999999999999985 778899999999853 12467899999999999999
Q ss_pred -CCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-----HHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCccc-CCc
Q 004119 316 -PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-----EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE-EGK 388 (773)
Q Consensus 316 -pd~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~e-----el~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~-~g~ 388 (773)
+|..+++|+|.+.+.+..++|+++|++|.+.+..+ .+.++ ..|...+ .+..++ |..+..+ .++
T Consensus 124 ~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~--~~~g~l~-~~~~~~-------~~~~~~~~~~~ 193 (414)
T 3c8z_A 124 PPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADAT--AQFGYES-GYDRDT-------MLTLFAERGGD 193 (414)
T ss_dssp CCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSS--TTTTTTT-CCCHHH-------HHHHHHHTTCC
T ss_pred CCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhh--hhhHhhc-CCCHHH-------HHHHHhhcccc
Confidence 88878889999999999999999999998765310 01111 1111111 122332 2221000 011
Q ss_pred eEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccc----------ccccccCCcceeecCcccccchH
Q 004119 389 ATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAH----------CIVDSIENITHSLCTLEFETRRA 457 (773)
Q Consensus 389 ~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~-~~~PtY~fa~----------~VDD~~~gITHviRg~E~~~~~~ 457 (773)
. + ........|+++|++..+.++.|.++| .|+|+||..| ++|.|.+|++|+. -|+.+.+
T Consensus 194 ~------~-~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~---~H~~~~~ 263 (414)
T 3c8z_A 194 P------D-RPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIF---PHHEYSA 263 (414)
T ss_dssp T------T-CTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTT---THHHHHH
T ss_pred c------c-ccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEecccccc---HHHHHHH
Confidence 0 0 122345689999999888888887788 7899999887 6788888888875 3666555
Q ss_pred HHHHHHHHh-CC-CCCceeee-eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCC
Q 004119 458 SYFWLLHAL-GL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS 534 (773)
Q Consensus 458 ~q~~L~~aL-g~-~~P~~w~f-~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s 534 (773)
.| ..++ |. ..+.+|.| ++++.+|+|||||+|+ ..++..+.++||.|+++|.|+++ +-.
T Consensus 264 a~---~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~~ll~~g~g~D~lR~~ll~-~~~ 324 (414)
T 3c8z_A 264 AH---AESVTGERRFARHYVHTGMIGWDGHKMSKSRGN---------------LVLVSQLRAQGVDPSAIRLGLFS-GHY 324 (414)
T ss_dssp HH---HHHHHCCSCSEEEEEEECCBC----------------------------CBHHHHHHTTCCHHHHHHHHHT-SCT
T ss_pred HH---HHHhcCCCCcCeEEEEcCEEecCCeEcccccCC---------------cCCHHHHhhccCCcchheeEEEe-cCc
Confidence 54 2343 76 44557777 7999999999999998 57999999999999999999998 433
Q ss_pred CCCccccHhHHHHHHHH
Q 004119 535 RSDSLIRLDRLEYHIRE 551 (773)
Q Consensus 535 ~~~~~~~~~~Le~~~r~ 551 (773)
..+..++++.|.+..+.
T Consensus 325 ~~d~~fs~~~l~~~~~~ 341 (414)
T 3c8z_A 325 REDRFWSNEVLDEANAR 341 (414)
T ss_dssp TSCBCCCHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHH
Confidence 44556888888876553
No 19
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.83 E-value=2.8e-20 Score=211.36 Aligned_cols=270 Identities=14% Similarity=0.084 Sum_probs=173.4
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------cccchHHHHHHHHHHHHH
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQW 311 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----------------p~r~~~e~~~~I~edL~w 311 (773)
-+++.-+|.|||.|||||+|++++.+.+||. ..|..++++.++| |.....++.+.|.++++|
T Consensus 7 ~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 86 (497)
T 2csx_A 7 FYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEF 86 (497)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3688889999999999999999999999995 5999999999999 566678899999999999
Q ss_pred cCCCCCCcCCCch--hHHHHHHHHHHHHHcCCcccC-----CCCHHHHHHhhhccCC-CCC--CCCCHHHHhHHHHHhhc
Q 004119 312 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMN-SPW--RDRPIAESLKLFEDMRN 381 (773)
Q Consensus 312 LGi~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~C-----~cs~eel~~~R~~~~~-~~~--R~~s~ee~l~~f~~m~~ 381 (773)
||+.+|..+++|+ |.+.+.+...+|+++|++|.| +|...+..-....-.. +.| ...+++. +.
T Consensus 87 lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~-------~~- 158 (497)
T 2csx_A 87 LKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEY-------IK- 158 (497)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC----------------------------------------C-
T ss_pred hCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeE-------Ee-
Confidence 9999998888888 999999999999999999987 5655432111000000 112 1111111 00
Q ss_pred CcccCCceEEEEEecC-------------C--CC-----------CCCcCccEEEEEecCCCCCCCCcccccccccc---
Q 004119 382 GRIEEGKATLRMKQDM-------------Q--ND-----------NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDY--- 432 (773)
Q Consensus 382 G~~~~g~~~lR~K~d~-------------~--~~-----------~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~f--- 432 (773)
...+.+|++. . .+ +..++|+.+-|.... .-||.+-.+.|+|++
T Consensus 159 ------~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~--~~WG~~iP~~~~~~i~vW 230 (497)
T 2csx_A 159 ------EPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSR--VKWGIPVPFDPEHTIYVW 230 (497)
T ss_dssp ------CEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTT--CCSSEEETTEEEEEECSH
T ss_pred ------cCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCC--CCCceecCCCCCceEEEe
Confidence 0122222110 0 00 013468887773110 013321111124553
Q ss_pred -------cccccc---ccCCcceeecCccccc-chHHHHHHHHHhCCCCCc-eeeeeeccCCCceecccccccccccCcc
Q 004119 433 -------AHCIVD---SIENITHSLCTLEFET-RRASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKYV 500 (773)
Q Consensus 433 -------a~~VDD---~~~gITHviRg~E~~~-~~~~q~~L~~aLg~~~P~-~w~f~~Ln~~g~kLSKRk~~~lv~~~~v 500 (773)
.+++.| ....+++.+.|.|++. +.........++|+..|. +++++++..+|+|||||+|+
T Consensus 231 ~ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~~G~KMSKS~GN-------- 302 (497)
T 2csx_A 231 FDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTVEGKKMSKTLGN-------- 302 (497)
T ss_dssp HHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEESSSSBCCTTTTC--------
T ss_pred cccchhhcccCCCcchhhCCceEEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEeCCceeCCcCCC--------
Confidence 334444 2236677777888765 111111223577987776 45578888899999999998
Q ss_pred CCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHH
Q 004119 501 DGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 551 (773)
Q Consensus 501 ~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~ 551 (773)
..++..+.+. |.++|+|.|+++.+-...+..++++.+.+..+.
T Consensus 303 -------~i~~~dli~~-~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~ 345 (497)
T 2csx_A 303 -------VVDPYEVVQE-YGLDEVRYFLLREVPFGQDGDFSKKAILNRING 345 (497)
T ss_dssp -------CCCHHHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHH
T ss_pred -------CCCHHHHHHH-CCcHHHHHHHHhcCCcccCCCCChHHHHHHHHH
Confidence 4678888874 999999999998765556667888888776543
No 20
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.77 E-value=3.3e-18 Score=194.29 Aligned_cols=279 Identities=15% Similarity=0.058 Sum_probs=169.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC----------------cccchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD----------------p~r~~~e~~~~I~edL~wL 312 (773)
+++--+|+|||.|||||+|++++.+.+|| ...|.-++++.++| +.....++.+.|.+++++|
T Consensus 6 ~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 85 (500)
T 2d5b_A 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL 85 (500)
T ss_dssp EEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 55666789999999999999999999999 45999999999998 5555678999999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCcccCC-----CCHHHHHHhhhccCCCCCC--CCCHHHH--------hHH
Q 004119 313 GWEPFKITYTSD--YFQELYELAVELIRRGHAYVDH-----QTPEEIKEYREKKMNSPWR--DRPIAES--------LKL 375 (773)
Q Consensus 313 Gi~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~C~-----cs~eel~~~R~~~~~~~~R--~~s~ee~--------l~~ 375 (773)
|+.+|..+++++ |.+.+.+..++|.++|++|.+. |...+-.-....-..+.|. ..+++.. +..
T Consensus 86 gi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~ 165 (500)
T 2d5b_A 86 GIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEK 165 (500)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGG
T ss_pred CCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHH
Confidence 999998778888 8888889999999999999762 2211000000000011111 1111100 000
Q ss_pred HHHhhcCcccCC-ceEEE--EEecC-CCCCCCcCccEEEEEecCCCCCCCCcccccc---------------------cc
Q 004119 376 FEDMRNGRIEEG-KATLR--MKQDM-QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP---------------------SY 430 (773)
Q Consensus 376 f~~m~~G~~~~g-~~~lR--~K~d~-~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~P---------------------tY 430 (773)
|.+......+.+ ..+.. .+..+ ..-...+.|+.+-|.... ..||.+ .| .|
T Consensus 166 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~--~~WG~p---iP~~~~~v~~vWfds~~~y~~~~g~ 240 (500)
T 2d5b_A 166 YRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSR--VPWGIP---LPWDENHVTFVWFDALLNYVSALDY 240 (500)
T ss_dssp GHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTT--CCSSCE---ETTEEEEEECHHHHHHTHHHHTTTT
T ss_pred HHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeeccccccc--ccCccc---cCCCCCCeeEEccccchhhHHHcCC
Confidence 000000000000 00000 00000 000023478888772100 013321 22 35
Q ss_pred ccccccccccCCcceeecCcccccc-hHHHHHHHHHhCCCCCce-eeeeeccC-CCceecccccccccccCccCCCCCcc
Q 004119 431 DYAHCIVDSIENITHSLCTLEFETR-RASYFWLLHALGLYQPYV-WEYSRLNV-SNTVMSKRKLNFLVTNKYVDGWDDPC 507 (773)
Q Consensus 431 ~fa~~VDD~~~gITHviRg~E~~~~-~~~q~~L~~aLg~~~P~~-w~f~~Ln~-~g~kLSKRk~~~lv~~~~v~gWdDPr 507 (773)
+..|..+++. +.++.+-|.|++.- ..-...+..++|+..|.. +++|++.. +|+|||||+|+
T Consensus 241 ~~~~~~~~~~-p~di~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSKS~GN--------------- 304 (500)
T 2d5b_A 241 PEGEAYRTFW-PHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGN--------------- 304 (500)
T ss_dssp TTCHHHHHHG-GGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTC---------------
T ss_pred CCCchHHHcC-CCeEEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCCCCcccccCCC---------------
Confidence 4443222222 44555667777641 111112345779877774 55788888 99999999998
Q ss_pred cccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHH
Q 004119 508 LMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 551 (773)
Q Consensus 508 ~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~ 551 (773)
..++..+.+. |.++|+|.|+++.+-...+..++++.+.+....
T Consensus 305 ~i~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~ 347 (500)
T 2d5b_A 305 VVDPFALLEK-YGRDALRYYLLREIPYGQDTPVSEEALRTRYEA 347 (500)
T ss_dssp CCCHHHHHHH-HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHH
T ss_pred CCCHHHHHHh-cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHH
Confidence 4678888875 999999999998665555667888888776543
No 21
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.67 E-value=2e-16 Score=183.72 Aligned_cols=297 Identities=15% Similarity=0.077 Sum_probs=188.8
Q ss_pred CCcceeecCcHHHHHHhhhhc--C----CeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCc
Q 004119 227 DGSVLICCNTKEVLDKHLEVT--G----GNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNP 294 (773)
Q Consensus 227 ~~~~~~~~~~~~~~~~h~~~~--~----g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp 294 (773)
+|++...-+...+...-+... . |+|++=| .|+|||+|||||+|++++.+.+|| .|...++-.|.|.+.
T Consensus 75 ggfiN~~l~~~~~~~~~~~~~~~~~~~~g~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~ 154 (592)
T 1iq0_A 75 GGYLNFRLRTEALLREALRPKAPFPRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGR 154 (592)
T ss_dssp TTEEEEEECHHHHHHHHHSCCCCCCCEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSH
T ss_pred CCEEEEEECHHHHHHHHHHHHHhcCcccCeEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcch
Confidence 355555555554444444331 1 2666666 899999999999999999999988 244455555667631
Q ss_pred ----------------------------------------------------------ccchHHHHHHHHHHHHHcCCCC
Q 004119 295 ----------------------------------------------------------EAEKKEYIDHIEEIVQWMGWEP 316 (773)
Q Consensus 295 ----------------------------------------------------------~r~~~e~~~~I~edL~wLGi~p 316 (773)
......+.+.|.++++|||+.+
T Consensus 155 q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~ 234 (592)
T 1iq0_A 155 QAAETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARY 234 (592)
T ss_dssp HHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCcccCCCCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEe
Confidence 1123356778899999999999
Q ss_pred CCcCCCchh--HHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCC-CCCCCCHHHHhHHHHHhhcCccc-CCceEEE
Q 004119 317 FKITYTSDY--FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNS-PWRDRPIAESLKLFEDMRNGRIE-EGKATLR 392 (773)
Q Consensus 317 d~~~~qSd~--~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~-~~R~~s~ee~l~~f~~m~~G~~~-~g~~~lR 392 (773)
|.....|++ .+.+.+.+++|.++|++|.|.-. .+++ .|-..+. -|... -|..+++
T Consensus 235 D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g----------~~~G~~~~~~~~-----------~g~~~~l~~~vi~ 293 (592)
T 1iq0_A 235 DLLVWESDIVRAGLLQKALALLEQSPHVFRPREG----------KYAGALVMDASP-----------VIPGLEDPFFVLL 293 (592)
T ss_dssp SEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSS----------TTTTCEEEECTT-----------TSCSCSCCEEEEE
T ss_pred EEeccCCcccccchHHHHHHHHHHCCCcccCccc----------CcCCCEEEechh-----------cCCCCCCCceEEE
Confidence 887788887 56778889999999999987211 1111 1111100 01100 0112222
Q ss_pred EEecCCCCCCCcCcc--EEE--------EEecCCCCCCCCccccccccccccccccccCCccee--ecCcccccchHHHH
Q 004119 393 MKQDMQNDNFNMYDL--IAY--------RIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHS--LCTLEFETRRASYF 460 (773)
Q Consensus 393 ~K~d~~~~~~~~~D~--V~~--------R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHv--iRg~E~~~~~~~q~ 460 (773)
|-+- ......+|+ ++| |... .+.++| +.|.||..| +.-...+.+|+ |.|.+|..+.+++.
T Consensus 294 -ksdG-~~~Y~~~D~a~~~~Kl~l~~~~~~~~----~~~~p~-~r~~w~~~g-~~~~~~~~~~~iyV~g~~h~~~~~~~~ 365 (592)
T 1iq0_A 294 -RSNG-TATYYAKDIAFQFWKMGILEGLRFRP----YENPYY-PGLRTSAPE-GEAYTPKAEETINVVDVRQSHPQALVR 365 (592)
T ss_dssp -CTTS-CBCHHHHHHHHHHHHTTSSCCCEEEE----CCCSSC-TTCEEEEEE-EEECCCCCSEEEEEEESSSCCCHHHHH
T ss_pred -ecCC-ceEEecchHHHHHHHhhhhhhhhhhh----hhcCcc-hhhcccccC-cccCCCCCCEEEEEEeccHHHHHHHHH
Confidence 2110 111223454 555 4321 122344 368887554 33344466776 78999999999999
Q ss_pred HHHHHhCCCC-Ccee-ee--eeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCC
Q 004119 461 WLLHALGLYQ-PYVW-EY--SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 536 (773)
Q Consensus 461 ~L~~aLg~~~-P~~w-~f--~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~ 536 (773)
.+++++|+.. +..| |+ +.++.+|.|||||+|+ ..++..|++.|+ +++++++...+..-+
T Consensus 366 ~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn---------------~v~l~dll~~~~--~~~~~~~~~~~~~~~ 428 (592)
T 1iq0_A 366 AALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGL---------------AVSVDEVLEEAT--RRARAIVEEKNPDHP 428 (592)
T ss_dssp HHHHHTTCHHHHTTEEEEEECCEEETTBCSCC-------------------CCBHHHHHHHHH--HHHHHHHHHHCTTCS
T ss_pred HHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCC---------------ccCHHHHHHHHH--HHHHHHHHhhCCCCC
Confidence 9999999854 3345 44 4488899999999998 468999999887 788888888776433
Q ss_pred CccccHhHHH-----HHHHHhhhcCCCceeeEecceeEEEEe
Q 004119 537 DSLIRLDRLE-----YHIREELNKTAPRTMVVLNPLKVVITN 573 (773)
Q Consensus 537 ~~~~~~~~Le-----~~~r~~~~~~~~R~~av~dp~kl~i~N 573 (773)
+. +.+. .++|-|+....++....||..++...+
T Consensus 429 ~~----e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~ 466 (592)
T 1iq0_A 429 DK----EEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFE 466 (592)
T ss_dssp CH----HHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSS
T ss_pred cH----HHHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHHh
Confidence 22 2333 368888888889999999988775444
No 22
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.6e-16 Score=171.67 Aligned_cols=193 Identities=14% Similarity=0.083 Sum_probs=134.8
Q ss_pred cHHHHHHhhhhcCC--eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec----CCcccch--------HHH
Q 004119 236 TKEVLDKHLEVTGG--NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TNPEAEK--------KEY 301 (773)
Q Consensus 236 ~~~~~~~h~~~~~g--~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD----TDp~r~~--------~e~ 301 (773)
+++.|.+.|+..+. .|.++|.| ||.|||||++.|+.+|.+++ .|+.++++|.| |+..+.. ..+
T Consensus 25 ~~e~L~~~L~~~~~p~~vy~G~~P--TG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~ 101 (394)
T 2dlc_X 25 NPQIIKDVLEVQKRHLKLYWGTAP--TGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYY 101 (394)
T ss_dssp CHHHHHHHHHTSCSCCEEEEEECC--CSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHH
T ss_pred CHHHHHHHHHccCCCeEEEEEeCC--CCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHH
Confidence 36778888876333 58899988 79999999999999999998 89999999999 7532211 124
Q ss_pred HHHHHHHHHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHh
Q 004119 302 IDHIEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDM 379 (773)
Q Consensus 302 ~~~I~edL~wLGi~pd~--~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m 379 (773)
...|..++.|+|++|++ +.+||+++. .-+++..++ .|.|+||..++..... + +
T Consensus 102 ~~~i~~~l~a~Gldp~k~~i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~~-------------~-------~ 156 (394)
T 2dlc_X 102 ELTIKAILRSINVPIEKLKFVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAGA-------------D-------V 156 (394)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHTT-------------T-------T
T ss_pred HHHHHHHHHHcCCChhHcEEEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhcccH-------------h-------h
Confidence 56777889999999986 789999853 223444444 6899999998864310 0 0
Q ss_pred hcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHH
Q 004119 380 RNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASY 459 (773)
Q Consensus 380 ~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q 459 (773)
. |.. .+. -.+.-+|..--+.|..+++++|+++|.|+..|...+
T Consensus 157 ----~-------r~~-----~~~---------------------~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~ 199 (394)
T 2dlc_X 157 ----V-------KQV-----ANP---------------------LLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLA 199 (394)
T ss_dssp ----S-------CCC-----SSC---------------------CTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHH
T ss_pred ----h-------ccc-----CCc---------------------cceeeechhHhhccHhhhCCCEEecCccHHHHHHHH
Confidence 0 000 000 012345555566677789999999999999999999
Q ss_pred HHHHHHhCCCCCceeeeeec-cCC-Cceeccccccc
Q 004119 460 FWLLHALGLYQPYVWEYSRL-NVS-NTVMSKRKLNF 493 (773)
Q Consensus 460 ~~L~~aLg~~~P~~w~f~~L-n~~-g~kLSKRk~~~ 493 (773)
..|+..+|+..|...+.+.| +++ |+|||||.++.
T Consensus 200 rdl~~r~~~~~p~~l~~pll~gl~~G~KMSKS~~ns 235 (394)
T 2dlc_X 200 EENLPSLGYKKRAHLMNPMVPGLAQGGKMSASDPNS 235 (394)
T ss_dssp HHHGGGGTCCCCEEEEECCCCCCC----------CC
T ss_pred HHHHHHcCCCCCEEEecccccCCCCCCcCCCCCCCC
Confidence 99999999988877776664 678 99999999863
No 23
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.60 E-value=3.5e-14 Score=163.79 Aligned_cols=286 Identities=13% Similarity=0.059 Sum_probs=163.8
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCE---EEEEeecCC-------------cccchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGY---CYLRYDDTN-------------PEAEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~---~iLRidDTD-------------p~r~~~e~~~~I~edL~wL 312 (773)
++|--+|.|||.|||||+|++++.+.+|| ...|. |+.-+||.+ +......+.+.|.+++++|
T Consensus 21 ~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 100 (560)
T 3h99_A 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF 100 (560)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc
Confidence 67778899999999999999999999999 34454 555555433 4445678999999999999
Q ss_pred CCCCCCcCCCc--hhHHHHHHHHHHHHHcCCcc-------cCCCCHHHHHHh--hh--c------cCCCC---CCC-CCH
Q 004119 313 GWEPFKITYTS--DYFQELYELAVELIRRGHAY-------VDHQTPEEIKEY--RE--K------KMNSP---WRD-RPI 369 (773)
Q Consensus 313 Gi~pd~~~~qS--d~~~~~y~~a~~LI~~G~AY-------~C~cs~eel~~~--R~--~------~~~~~---~R~-~s~ 369 (773)
|+.+|..++++ .|.+...+...+|.++|++| .|.....-+... .+ + .+... |.. ...
T Consensus 101 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~ 180 (560)
T 3h99_A 101 NISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSP 180 (560)
T ss_dssp TCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCG
T ss_pred CCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCCh
Confidence 99999765555 55556667789999999998 232111100000 00 0 00000 100 000
Q ss_pred HHHhHHHHHhhcCcccC--CceEEEEEecCCC----------------C-------CCCcCccEEEEEecC-CCCCCCCc
Q 004119 370 AESLKLFEDMRNGRIEE--GKATLRMKQDMQN----------------D-------NFNMYDLIAYRIKFT-PHPHAGDK 423 (773)
Q Consensus 370 ee~l~~f~~m~~G~~~~--g~~~lR~K~d~~~----------------~-------~~~~~D~V~~R~~~~-~h~~~gd~ 423 (773)
.+-. .-...+.|..-+ .+-.+.++++.-. . ...+.|+.+-|.... +++..+++
T Consensus 181 ~~l~-~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~ 259 (560)
T 3h99_A 181 TELI-EPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAP 259 (560)
T ss_dssp GGCE-EEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCT
T ss_pred hhhc-CCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCC
Confidence 0000 000000000000 0112222211000 0 014578887776422 33222211
Q ss_pred ------cc-ccccc-----ccc----------ccc-ccccCCcceeecCccccc-chHHHHHHHHHhCCCCCc-eeeeee
Q 004119 424 ------WC-IYPSY-----DYA----------HCI-VDSIENITHSLCTLEFET-RRASYFWLLHALGLYQPY-VWEYSR 478 (773)
Q Consensus 424 ------~~-~~PtY-----~fa----------~~V-DD~~~gITHviRg~E~~~-~~~~q~~L~~aLg~~~P~-~w~f~~ 478 (773)
|- .-..| ++. .-- .|....+.|++ |.|++. +...+-.++.++|+..|. ++.|++
T Consensus 260 ~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~-G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~ 338 (560)
T 3h99_A 260 GKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFI-GKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGY 338 (560)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEE-EGGGHHHHHTHHHHHHHHTTBCCCSEEEEECC
T ss_pred CceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEe-ccccchhHHHHHHHHHHhCCCCCCcEEEEEeE
Confidence 20 00111 000 000 23344557776 888875 333333477889987774 344778
Q ss_pred ccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCC-CCccccHhHHHH-HHHHhhh
Q 004119 479 LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR-SDSLIRLDRLEY-HIREELN 554 (773)
Q Consensus 479 Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~-~~~~~~~~~Le~-~~r~~~~ 554 (773)
+..+|.|||||+|+ ..++..+.++ |.++|+|.|++..+... .+..++++.+.+ .++.+.+
T Consensus 339 v~~~G~KMSKS~GN---------------vv~p~d~i~~-~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~ 400 (560)
T 3h99_A 339 VTVNGAKMSKSRGT---------------FIKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVN 400 (560)
T ss_dssp EEETTEECCTTTTC---------------CCBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCC
T ss_pred EEeCCeeccccCCC---------------cCCHHHHHHH-cCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 88899999999998 4688888887 99999999999876644 555788877654 3444443
No 24
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.59 E-value=1.6e-14 Score=165.66 Aligned_cols=275 Identities=17% Similarity=0.125 Sum_probs=145.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCc-------------ccchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp-------------~r~~~e~~~~I~edL~wL 312 (773)
++|.-.|.|||++||||+|++++.+.+||. ++..|+..+||.+. ......+.+.|.+++++|
T Consensus 28 ~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 107 (536)
T 4dlp_A 28 YITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVL 107 (536)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 788889999999999999999999999983 45568888888653 344678999999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCcccC-----CCCHHHHH-Hhhh--c---cC-CCCCCCCC----------
Q 004119 313 GWEPFKITYTSD--YFQELYELAVELIRRGHAYVD-----HQTPEEIK-EYRE--K---KM-NSPWRDRP---------- 368 (773)
Q Consensus 313 Gi~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~C-----~cs~eel~-~~R~--~---~~-~~~~R~~s---------- 368 (773)
|+.+|..+++++ |.+.+.+..++|+++|++|.+ +|...+-. ..+. . +. -+.|..-.
T Consensus 108 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~ 187 (536)
T 4dlp_A 108 NSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFF 187 (536)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEE
T ss_pred CCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEE
Confidence 999997666665 888888999999999999965 34322100 0000 0 00 01121100
Q ss_pred ----HHHHhHHHHHhhcCc--ccCCceEEEEEecCCCCCCCcCccEEEEEec-CCCCCCCCc------c----------c
Q 004119 369 ----IAESLKLFEDMRNGR--IEEGKATLRMKQDMQNDNFNMYDLIAYRIKF-TPHPHAGDK------W----------C 425 (773)
Q Consensus 369 ----~ee~l~~f~~m~~G~--~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~-~~h~~~gd~------~----------~ 425 (773)
..+.+ .+....+. +.+....-++. ..-...+.|+.+=|... =++|..+++ | .
T Consensus 188 ~l~~~~~~l--~~~~~~~~~~i~P~~~~~~~~---~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~ 262 (536)
T 4dlp_A 188 RLSAYQDKL--LDLYENNPGFIMPAERRNEIV---SFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITAL 262 (536)
T ss_dssp CGGGGHHHH--HHHHHHCTTSEESHHHHHHHH---HHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTT
T ss_pred ecHHHHHHH--HHHHHhCCCccCcHHHHHHHH---HHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhc
Confidence 00000 00011100 00000000000 00012346777766421 122222211 1 0
Q ss_pred cccccccccccccccCCcceeecCcccccc-hHHHHHHHHHhCCCCCc-eeeeeeccCCCceecccccccccccCccCCC
Q 004119 426 IYPSYDYAHCIVDSIENITHSLCTLEFETR-RASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGW 503 (773)
Q Consensus 426 ~~PtY~fa~~VDD~~~gITHviRg~E~~~~-~~~q~~L~~aLg~~~P~-~w~f~~Ln~~g~kLSKRk~~~lv~~~~v~gW 503 (773)
+||.-. .-.....-.--|+ -|.|++.. ...+-.++.++|+..|. ++.+++++.+|+|||||+|+
T Consensus 263 ~~~~~~--~~~~~~~p~dv~~-~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~~~G~KMSKS~GN----------- 328 (536)
T 4dlp_A 263 GYPDTT--DERWAYWPANAHI-IGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVGN----------- 328 (536)
T ss_dssp TTTCTT--SGGGGGCSCSEEE-EEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEEC----------------------
T ss_pred CCCCCc--hHHHhhCCcceEE-eechHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEeeCCceecccCCC-----------
Confidence 111100 0000000001233 36666542 22222345678886554 34457788899999999998
Q ss_pred CCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHH
Q 004119 504 DDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 549 (773)
Q Consensus 504 dDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~ 549 (773)
..++..+.+. |.++|+|.|+++.+-...+..++++.+.+.+
T Consensus 329 ----vi~p~d~i~~-~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~ 369 (536)
T 4dlp_A 329 ----VIDPFELVER-YGLDQLRYFLMREVPFGQDGSYSHEAIVNRT 369 (536)
T ss_dssp -----CCHHHHHHH-HCHHHHHHHHHHHSCTTSCEECCHHHHHHHH
T ss_pred ----CCCHHHHHHH-cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 4677887775 8999999999886544455578887776543
No 25
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.58 E-value=1.6e-14 Score=165.21 Aligned_cols=279 Identities=17% Similarity=0.138 Sum_probs=163.0
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------cccchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----------------p~r~~~e~~~~I~edL~wL 312 (773)
.++=-.|.|||.|||||||++++.+.+||. +.|.-++++.++| |.....++.+.|.+++++|
T Consensus 15 ~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 94 (524)
T 2x1l_A 15 YITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKL 94 (524)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 345567999999999999999999999994 6898899999888 2233557899999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCcccC-----CCCHHHHH-Hhhh--c---cCCCC-CCCCCHHHH------
Q 004119 313 GWEPFKITYTSD--YFQELYELAVELIRRGHAYVD-----HQTPEEIK-EYRE--K---KMNSP-WRDRPIAES------ 372 (773)
Q Consensus 313 Gi~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~C-----~cs~eel~-~~R~--~---~~~~~-~R~~s~ee~------ 372 (773)
|+.+|..+++|+ |.+.+.+...+|.++|++|.. +|...+-. ..++ . +..|+ ....+++..
T Consensus 95 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF 174 (524)
T 2x1l_A 95 NISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYF 174 (524)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEE
T ss_pred CCcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeE
Confidence 999998778888 988899999999999999843 34322100 0000 0 00111 111111100
Q ss_pred --hHHHHHhhcCcccCCceEEE---EEecC-CCCCCCcCccEEEEEecC-CCCCCCC------cc----------ccccc
Q 004119 373 --LKLFEDMRNGRIEEGKATLR---MKQDM-QNDNFNMYDLIAYRIKFT-PHPHAGD------KW----------CIYPS 429 (773)
Q Consensus 373 --l~~f~~m~~G~~~~g~~~lR---~K~d~-~~~~~~~~D~V~~R~~~~-~h~~~gd------~~----------~~~Pt 429 (773)
+..|.+......+.+...+. .|..+ ..-...++|+.+-|.... ++|..++ -| .+||.
T Consensus 175 ~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~p~ 254 (524)
T 2x1l_A 175 FRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPD 254 (524)
T ss_dssp ECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTC
T ss_pred eeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHcCCCC
Confidence 00000000000000000000 00000 000123567777774211 1111111 12 12221
Q ss_pred c---cc--ccccccccCCcceeecCcccccchHHHHHHHHHhCCCCC-ceeeeeeccCCCceecccccccccccCccCCC
Q 004119 430 Y---DY--AHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGW 503 (773)
Q Consensus 430 Y---~f--a~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~P-~~w~f~~Ln~~g~kLSKRk~~~lv~~~~v~gW 503 (773)
- .| --++|-|..|..|+. -|....+. +..++|+..| .+|.|+++..+|.|||||+|+
T Consensus 255 ~~~~~~~~~~p~di~~~G~D~~~---fh~~~~~a---~l~~~g~~~~~~v~~hG~v~~~G~KMSKS~GN----------- 317 (524)
T 2x1l_A 255 TESESFRRYWPADLHMIGKDIIR---FHTVYWPA---FLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGN----------- 317 (524)
T ss_dssp TTSHHHHHHCSCSEEEEEGGGHH---HHHTHHHH---HHHHHTCCCCSCEEEECCEEECSCSEETTTEE-----------
T ss_pred CchHHHHhhCCCeEEEEeechhH---hHHHHHHH---HHHHCCCCCCcEEEECcEEEeCCcccCCcCCC-----------
Confidence 0 00 002344445554442 11221222 2345688665 578889998899999999998
Q ss_pred CCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHH
Q 004119 504 DDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 551 (773)
Q Consensus 504 dDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~ 551 (773)
..++..+.++ |.++|+|.|+++.+-...+..++++.+.+....
T Consensus 318 ----~v~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~ 360 (524)
T 2x1l_A 318 ----VVDPVNLVDT-FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNA 360 (524)
T ss_dssp ----SSCHHHHHHH-HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHH
T ss_pred ----CCCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 4688888876 999999999998655555667888888766543
No 26
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.47 E-value=5.2e-13 Score=150.74 Aligned_cols=256 Identities=16% Similarity=0.190 Sum_probs=161.1
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc-ccchHHHHHHHHH-HHH-HcCCCC--CCc
Q 004119 248 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-EAEKKEYIDHIEE-IVQ-WMGWEP--FKI 319 (773)
Q Consensus 248 ~g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp-~r~~~e~~~~I~e-dL~-wLGi~p--d~~ 319 (773)
+.+|++=| +|+|||+|||||+|++++.+.+|| ...|.=++|.--+|. .+...-...++.. -.+ ++|... .+-
T Consensus 29 ~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~ 108 (464)
T 3fnr_A 29 QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQ 108 (464)
T ss_dssp SCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCSS
T ss_pred CCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCchh
Confidence 45799999 899999999999999999999999 467888888877764 3444444444422 244 556552 233
Q ss_pred CCCchhHHHHHHHHHHHHHc-CCcccCCCCHHHHHHhhh--------------c----cCC------CCCCCCCHHHHhH
Q 004119 320 TYTSDYFQELYELAVELIRR-GHAYVDHQTPEEIKEYRE--------------K----KMN------SPWRDRPIAESLK 374 (773)
Q Consensus 320 ~~qSd~~~~~y~~a~~LI~~-G~AY~C~cs~eel~~~R~--------------~----~~~------~~~R~~s~ee~l~ 374 (773)
.|+.+| +.+.|+++.++ +..+.. .++....+. . .++ +.+. ..++.++
T Consensus 109 ~y~g~~---~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~--~~~~vv~ 180 (464)
T 3fnr_A 109 YYKGEY---IVDLAKEAFEKFGKEFFS---EENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERSYYD--ALNATLE 180 (464)
T ss_dssp CCCSHH---HHHHHHHHHHHHCGGGCS---GGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGGGST--THHHHHH
T ss_pred hcCccH---HHHHHHHHHHhcchhhcC---cHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHHHHH--HHHHHHH
Confidence 456655 44667777665 555432 222222211 0 111 2222 4555443
Q ss_pred HHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccc---cccccccccCCccee--ecC
Q 004119 375 LFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCT 449 (773)
Q Consensus 375 ~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~---fa~~VDD~~~gITHv--iRg 449 (773)
.+++ .|...+.+-++.++.+- .+. -.|.|+-|. +| .|||. +|..+++..++++++ ++|
T Consensus 181 ~L~~--~g~~~e~dGa~~~~~~~-~g~--~~~~vl~ks-------DG-----~~~Y~t~DiA~~~~r~~~~~d~~Iyv~G 243 (464)
T 3fnr_A 181 SLKE--HKGIYEQEGKIWLASSQ-KGD--EKDRVIIRE-------DG-----RGTYLAADIVYHKDKMSRGYGKCINIWG 243 (464)
T ss_dssp HHHH--TTCEEEETTEEEECGGG-GTC--SSCEEEECT-------TS-----CBCHHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred HHHH--CCCEEEeCCeEEEEecc-cCC--CCceEEEeC-------CC-----ceehhhHHHHHHHHHHHcCCCeEEEEec
Confidence 3332 35443333345565432 111 146777765 44 67777 778999999999998 599
Q ss_pred cccccchHHHHHHHHHhCCCCCceee--eeeccC--CCc--eecccccccccccCccCCCCCcccccHHHHHHcCCCHHH
Q 004119 450 LEFETRRASYFWLLHALGLYQPYVWE--YSRLNV--SNT--VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTS 523 (773)
Q Consensus 450 ~E~~~~~~~q~~L~~aLg~~~P~~w~--f~~Ln~--~g~--kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeA 523 (773)
.|+..+.+++..+++++|+..|..-+ |+.+++ +|+ |||||+|+ ..++..+.+. +.++|
T Consensus 244 ~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn---------------~v~l~dll~~-~g~da 307 (464)
T 3fnr_A 244 ADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN---------------FILMSDVVDE-IGSDA 307 (464)
T ss_dssp GGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS---------------SCBHHHHHHH-HCHHH
T ss_pred CcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC---------------CCCHHHHHhh-ccHHH
Confidence 99999999988999999997654322 344433 775 99999998 4688888876 78899
Q ss_pred HHHHHHHhCCCCCCccccHhHH
Q 004119 524 INAFVQGIGISRSDSLIRLDRL 545 (773)
Q Consensus 524 I~~fl~~lG~s~~~~~~~~~~L 545 (773)
++.|+++...+ .+..++++.+
T Consensus 308 lRy~~l~~~~~-~d~~Fd~~~~ 328 (464)
T 3fnr_A 308 LRYIFLSKKCD-THLEFDISDL 328 (464)
T ss_dssp HHHHTTSSCTT-SCEEEEGGGG
T ss_pred HHHHHHhcCCC-CCCccCHHHH
Confidence 99888665432 2223444433
No 27
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.40 E-value=7e-13 Score=143.28 Aligned_cols=191 Identities=15% Similarity=0.124 Sum_probs=142.8
Q ss_pred HHHHHHhhhh-cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec-------CCcccchHHHHHHHHHH
Q 004119 237 KEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD-------TNPEAEKKEYIDHIEEI 308 (773)
Q Consensus 237 ~~~~~~h~~~-~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD-------TDp~r~~~e~~~~I~ed 308 (773)
++-|.+.|+. ..-.|.+.|. |||.|||||+ .++.+|...+..|+.+++.|-| +.+..+..++...|..+
T Consensus 20 ~~~l~~~l~~~~~~~vy~G~~--PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~ 96 (323)
T 2cyb_A 20 EEELRQLIETKEKPRAYVGYE--PSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKV 96 (323)
T ss_dssp HHHHHHHHHSCSCCEEEEEEC--CCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEECcC--CCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHH
Confidence 5667777864 3345778885 6799999998 5688999999889999999976 32334677888999999
Q ss_pred HHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccC
Q 004119 309 VQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEE 386 (773)
Q Consensus 309 L~wLGi~pd~--~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~ 386 (773)
+.|+|++|++ +.+||+.... -++++ ....|.|+||..++..... + + |+.
T Consensus 97 ~~a~Gldp~k~~i~~qS~~~~~-~~~~~----~~~~l~~~~t~~~l~~~~~--~---~-----------------~~~-- 147 (323)
T 2cyb_A 97 FIALGLDESRAKFVLGSEYQLS-RDYVL----DVLKMARITTLNRARRSMD--E---V-----------------SRR-- 147 (323)
T ss_dssp HHHTTCCTTTCEEEEGGGTTTS-HHHHH----HHHHHHHHSBHHHHHHHTT--T---T-----------------CSC--
T ss_pred HHHhCCCccceEEEEcchhccc-hHHHH----HHHHHhCccCHHHHhccch--h---h-----------------ccc--
Confidence 9999999986 5789998532 12222 2234789999988865310 0 0 000
Q ss_pred CceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHh
Q 004119 387 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 466 (773)
Q Consensus 387 g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aL 466 (773)
. +. .-.+.-+|.+..+.|+...+++|+++|.|...+...+..|.+.+
T Consensus 148 ----------~--~~---------------------~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~ 194 (323)
T 2cyb_A 148 ----------K--ED---------------------PMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRL 194 (323)
T ss_dssp ----------S--SS---------------------CBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGG
T ss_pred ----------c--CC---------------------CCchhhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhc
Confidence 0 00 01235678888888999999999999999999999999999999
Q ss_pred CCCCCceeeeeec-cCCCceecccccc
Q 004119 467 GLYQPYVWEYSRL-NVSNTVMSKRKLN 492 (773)
Q Consensus 467 g~~~P~~w~f~~L-n~~g~kLSKRk~~ 492 (773)
|...|...+++++ ..+|+|||||.++
T Consensus 195 ~~~~p~~l~~pll~~l~G~KMSKS~~n 221 (323)
T 2cyb_A 195 GYSSPVCLHTPILVGLDGQKMSSSKGN 221 (323)
T ss_dssp TCCCCEEEEECCCBCTTSSBCCTTTTC
T ss_pred CCCCceEEecCcccCCCCCcccCCcCc
Confidence 9988877777765 7889999999754
No 28
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.40 E-value=1.3e-12 Score=143.63 Aligned_cols=192 Identities=14% Similarity=0.082 Sum_probs=130.5
Q ss_pred cHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec----CC-cc------cchHHHHHH
Q 004119 236 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TN-PE------AEKKEYIDH 304 (773)
Q Consensus 236 ~~~~~~~h~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD----TD-p~------r~~~e~~~~ 304 (773)
+.+-|.+.|+...-.|.++|. |||.|||||+..++.++.+.+ .|+.+++.|.| |+ |. +....+.+.
T Consensus 23 ~~~~L~~~L~~~~~~vy~G~~--PTG~lHlG~~~~~l~~~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~ 99 (372)
T 1n3l_A 23 GEEKLKEILKERELKIYWGTA--TTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYEN 99 (372)
T ss_dssp CHHHHHHHHTTSCCEEEEEEC--CSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCEEEeCcC--CCCcccHHHHHHHHHHHHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHH
Confidence 356677778765557899999 579999999999999999987 79999999999 75 42 224455565
Q ss_pred -HHHHHHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhc
Q 004119 305 -IEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 381 (773)
Q Consensus 305 -I~edL~wLGi~pd~--~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~ 381 (773)
|...+.|+|++|++ +.+||++. ..-+++..++. |.|+||..+++.... + + .
T Consensus 100 ~i~~~lla~Gldp~k~~i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~~~~-------------~-------v-~ 153 (372)
T 1n3l_A 100 VIKAMLESIGVPLEKLKFIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKKAGA-------------E-------V-V 153 (372)
T ss_dssp HHHHHHHHHTCCCTTEEEEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHHHTT-------------T-------T-S
T ss_pred HHHHHHHHcCCChhhcEEEECCeec-ccHHHHHHHHH----HHhhCcHHHHHhchh-------------h-------h-h
Confidence 55567999999985 78899973 12244555554 789999887764200 0 0 0
Q ss_pred CcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHH
Q 004119 382 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFW 461 (773)
Q Consensus 382 G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~ 461 (773)
|.+ .+. -.+.-+|-.--+.|-.+.+.+|+++|.|...+.....-
T Consensus 154 ----------~~~----------~~~----------------~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rd 197 (372)
T 1n3l_A 154 ----------KQV----------EHP----------------LLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEK 197 (372)
T ss_dssp ----------CCC----------SSC----------------CHHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHH
T ss_pred ----------ccc----------CCC----------------cceeeecchHhhccHHHhcCCEEEcChhHHHHHHHHHH
Confidence 000 000 01123333333444445789999999999999999999
Q ss_pred HHHHhCCCCCceeeeeec-cCCCceecccccc
Q 004119 462 LLHALGLYQPYVWEYSRL-NVSNTVMSKRKLN 492 (773)
Q Consensus 462 L~~aLg~~~P~~w~f~~L-n~~g~kLSKRk~~ 492 (773)
|++.+|+..|...+.+.| +++|+|||||.++
T Consensus 198 l~~r~~~~~p~~l~~pll~gldG~KMSKS~~n 229 (372)
T 1n3l_A 198 YLPALGYSKRVHLMNPMVPGLTGSKMSSSEEE 229 (372)
T ss_dssp HGGGGTCCCCEEEEECCCCCSSCC-------C
T ss_pred HHHHcCCCCCEEEecCccCCCCcccccCCCCC
Confidence 999999888877666654 7889999999986
No 29
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.39 E-value=6.7e-13 Score=154.35 Aligned_cols=247 Identities=12% Similarity=0.094 Sum_probs=167.5
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCE---EEEEeec-------------------------CC---
Q 004119 248 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGY---CYLRYDD-------------------------TN--- 293 (773)
Q Consensus 248 ~g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~---~iLRidD-------------------------TD--- 293 (773)
+++|++=| +|+|+|+|||||+|++++.+.+|| .+-|. ++-.|.| +|
T Consensus 142 ~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~ 221 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLF 221 (607)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHH
T ss_pred CCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHH
Confidence 46798888 999999999999999999999988 34454 4444455 11
Q ss_pred --------------------c-----cc-------------------chHHHHHHHHHHHHHcCCCCCCcCCCchhH-HH
Q 004119 294 --------------------P-----EA-------------------EKKEYIDHIEEIVQWMGWEPFKITYTSDYF-QE 328 (773)
Q Consensus 294 --------------------p-----~r-------------------~~~e~~~~I~edL~wLGi~pd~~~~qSd~~-~~ 328 (773)
+ .+ ....+.+.+.++++.||+..|.....|+|. +.
T Consensus 222 ~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~ 301 (607)
T 1f7u_A 222 DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKES 301 (607)
T ss_dssp HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhH
Confidence 0 11 134567788999999999998777788887 67
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccE
Q 004119 329 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 408 (773)
Q Consensus 329 ~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V 408 (773)
+.+..+.|.++|++|... |.. .+..+- .+. ...+.|
T Consensus 302 ~~~vi~~L~~kG~~ye~d----------------------------------------Ga~--~~~~~~-~g~-~~d~~v 337 (607)
T 1f7u_A 302 MLKAIDLFKEKGLTHEDK----------------------------------------GAV--LIDLTK-FNK-KLGKAI 337 (607)
T ss_dssp HHHHHHHHHHTTCEEEET----------------------------------------TEE--EEEGGG-TCT-TTCEEE
T ss_pred HHHHHHHHHhCCCEEEEC----------------------------------------CcE--EEEecc-cCC-CCCcee
Confidence 778889999999999521 111 111110 110 112345
Q ss_pred EEEEecCCCCCCCCccccccccc---cccccccc-cCCcceee--cCcccccchHHHHHHHHHhCCCCCceeeeeec-cC
Q 004119 409 AYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDS-IENITHSL--CTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NV 481 (773)
Q Consensus 409 ~~R~~~~~h~~~gd~~~~~PtY~---fa~~VDD~-~~gITHvi--Rg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~L-n~ 481 (773)
+.|. +| -|+|. +|.+++.+ .++.+++| .|.++..+-++...+.+++|+..+.+|.|..+ .+
T Consensus 338 ~~Ks-------DG-----~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~fg~v 405 (607)
T 1f7u_A 338 VQKS-------DG-----TTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMV 405 (607)
T ss_dssp EECT-------TS-----CCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECCCCE
T ss_pred Eecc-------CC-----CcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEeccccc
Confidence 5443 33 35554 45666655 35788877 89999999988888889999977767877433 22
Q ss_pred CCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCC---ccccHhHHHH-----HHHHhh
Q 004119 482 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD---SLIRLDRLEY-----HIREEL 553 (773)
Q Consensus 482 ~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~---~~~~~~~Le~-----~~r~~~ 553 (773)
. +||||+|+ ..+|.+|.+..+. .| .+ +.. +.++ ..-+++.+.+ ++|-|+
T Consensus 406 ~--kMSkR~G~---------------~v~L~dLlde~~~-~a-~~-~~~---~~~~~~~~~~e~~~~a~~vgi~avry~~ 462 (607)
T 1f7u_A 406 Q--GMSTRKGT---------------VVFLDNILEETKE-KM-HE-VMK---KNENKYAQIEHPEEVADLVGISAVMIQD 462 (607)
T ss_dssp E--SCCGGGTC---------------CCBHHHHHHHHHH-HH-HH-HHH---TCHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred c--cccCCCCC---------------cccHHHHHHHHHH-HH-HH-HHH---hCcccccchhhHHHHHHHHHHHHHHHHH
Confidence 2 69999998 5789999987443 45 22 222 1111 0123444444 789999
Q ss_pred hcCCCceeeEecceeEEEEe
Q 004119 554 NKTAPRTMVVLNPLKVVITN 573 (773)
Q Consensus 554 ~~~~~R~~av~dp~kl~i~N 573 (773)
....+|...+||+.++...+
T Consensus 463 Ls~~~~s~~~Fd~d~~~~~~ 482 (607)
T 1f7u_A 463 MQGKRINNYEFKWERMLSFE 482 (607)
T ss_dssp HSSCTTCCEECCHHHHHCCS
T ss_pred hccCCCCCcccCHHHHHHHh
Confidence 99999999999998876554
No 30
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.37 E-value=6.4e-12 Score=145.17 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=79.7
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHH
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQW 311 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~-------------r~~~e~~~~I~edL~w 311 (773)
-++|--.|.|||.+||||+|++++.+.+|| .++..|+.-+||.+.. ....++.+.|.+++++
T Consensus 28 ~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~ 107 (564)
T 3kfl_A 28 FFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQE 107 (564)
T ss_dssp EEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 367888899999999999999999999998 3566788888887632 2356789999999999
Q ss_pred cCCCCCCcCCCc--hhHHHHHHHHHHHHHcCCcccC
Q 004119 312 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYVD 345 (773)
Q Consensus 312 LGi~pd~~~~qS--d~~~~~y~~a~~LI~~G~AY~C 345 (773)
||+.+|..++++ .|.+.+.+..++|.++|++|..
T Consensus 108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~ 143 (564)
T 3kfl_A 108 MNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLG 143 (564)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 999999765555 4777888889999999999863
No 31
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.33 E-value=3.3e-12 Score=149.24 Aligned_cols=250 Identities=16% Similarity=0.097 Sum_probs=147.7
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCC---EEEEEeecC-----------------------------
Q 004119 248 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGG---YCYLRYDDT----------------------------- 292 (773)
Q Consensus 248 ~g~v~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G---~~iLRidDT----------------------------- 292 (773)
+++|++=| +|+|||+|||||+|++++.+.+|| .+.| .++-.|+|.
T Consensus 118 ~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~ 197 (629)
T 2zue_A 118 GKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERG 197 (629)
T ss_dssp TCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccc
Confidence 45788888 999999999999999999999988 3344 444445664
Q ss_pred ---Ccc----------------------------------------cchHHHHHHHHHHHHHcCCCCCCcCCCchh--HH
Q 004119 293 ---NPE----------------------------------------AEKKEYIDHIEEIVQWMGWEPFKITYTSDY--FQ 327 (773)
Q Consensus 293 ---Dp~----------------------------------------r~~~e~~~~I~edL~wLGi~pd~~~~qSd~--~~ 327 (773)
||. .-...+.+.+.++++.||+..|.....|++ .+
T Consensus 198 ~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~ 277 (629)
T 2zue_A 198 LKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRK 277 (629)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTT
T ss_pred cccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccch
Confidence 111 113456778889999999999887788888 55
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCC-CCCCCCHHHHhHHHHHhhcCcc-cCCceEEEEEecCCCCCCCcC
Q 004119 328 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNS-PWRDRPIAESLKLFEDMRNGRI-EEGKATLRMKQDMQNDNFNMY 405 (773)
Q Consensus 328 ~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~-~~R~~s~ee~l~~f~~m~~G~~-~~g~~~lR~K~d~~~~~~~~~ 405 (773)
.+.+..++|.++|.+|.|.-. .+++ .|=..+. | |.. ..|..+++ |-|- ......+
T Consensus 278 ~v~~vi~~L~~kG~~y~~~~g----------e~~Ga~~v~~~~------~-----g~~~~~~~~v~~-ksdG-~~~Y~~~ 334 (629)
T 2zue_A 278 LFEIALELLSKNENFYIPSDG----------KYRGAFVMDLRK------L-----FPDMKNPILVLR-RSDG-TATYTGK 334 (629)
T ss_dssp HHHHHHHHHHTSTTEECCSSS----------TTTTCEEEECTT------T-----CSSSSCCEEEEE-CTTS-CBCHHHH
T ss_pred hHHHHHHHHHHCCCccccccC----------CcCCcEEEECcc------c-----CCccccCceEEE-ecCC-ccccchh
Confidence 777889999999999954210 0111 1100000 0 100 00112222 2110 0112234
Q ss_pred cc--EEE---------EEecCCCCCC-CCcc-ccccc-c-ccccccccccCCcceeecCcccccchHHHHHHHHHhCCCC
Q 004119 406 DL--IAY---------RIKFTPHPHA-GDKW-CIYPS-Y-DYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQ 470 (773)
Q Consensus 406 D~--V~~---------R~~~~~h~~~-gd~~-~~~Pt-Y-~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg~~~ 470 (773)
|+ ++| |...-..+.| ..+| .+.|. + ++.++| . |.|.++..+-.+-.....++|+..
T Consensus 335 Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~I--------y-V~g~~q~~~~~~l~~~l~~lG~~~ 405 (629)
T 2zue_A 335 DIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVI--------N-VIGAEQKHPQLAIKYALQLLGFED 405 (629)
T ss_dssp HHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEEE--------E-EEEGGGHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcEE--------E-EEeCcHhhHHHHHHHHHHHcCCCC
Confidence 55 444 3321101101 1244 45564 1 222222 2 225555555555555667889854
Q ss_pred -Cceeee---eeccCCCceeccccc--ccccccCccCCCCCcccccHHHHHHcC--------------------------
Q 004119 471 -PYVWEY---SRLNVSNTVMSKRKL--NFLVTNKYVDGWDDPCLMTLAGLRRRG-------------------------- 518 (773)
Q Consensus 471 -P~~w~f---~~Ln~~g~kLSKRk~--~~lv~~~~v~gWdDPr~~tL~~lrrrG-------------------------- 518 (773)
+..|+| +.++..|.|||||+| + ..++.+|.+.+
T Consensus 406 ~~~~~~h~~~g~V~~~~~KMSkr~G~~n---------------~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~ 470 (629)
T 2zue_A 406 AAANLYHLAYEHVERPEGKFSGRKGTWV---------------GFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEK 470 (629)
T ss_dssp HHHTEEEEEECCEEBTTBCCCTTTTTTT---------------TCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEeeeEEcCCCcccCCCCCCC---------------eeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHh
Confidence 445643 568889999999999 7 46888888764
Q ss_pred CCHHHHHHHHHHhCCCCCCccccHhHH
Q 004119 519 VTSTSINAFVQGIGISRSDSLIRLDRL 545 (773)
Q Consensus 519 ~~PeAI~~fl~~lG~s~~~~~~~~~~L 545 (773)
+.+.|++.|+++.... .+..++++.+
T Consensus 471 vg~~AvRy~~L~~~~~-~~~~Fd~d~~ 496 (629)
T 2zue_A 471 VGIGAIRYNLIKYSPD-KKIIFRWEDV 496 (629)
T ss_dssp HHHHHHHHHHHSSCTT-SCEECCHHHH
T ss_pred cChhHhhHHHHhcCCC-CCCeecHHHH
Confidence 6778888888876543 3334555544
No 32
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.26 E-value=5.9e-11 Score=136.03 Aligned_cols=94 Identities=16% Similarity=0.108 Sum_probs=74.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCc----------------ccchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp----------------~r~~~e~~~~I~edL~wL 312 (773)
++|==.|.|||.||||||++.++-+.++|. ..|.-++-+.+||. ..-..+|.+.|.+++++|
T Consensus 12 ~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~l 91 (542)
T 3u1f_A 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQM 91 (542)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 466667999999999999999999999983 46766666777773 122567899999999999
Q ss_pred CCCCCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 004119 313 GWEPFKITYTS--DYFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 313 Gi~pd~~~~qS--d~~~~~y~~a~~LI~~G~AY~ 344 (773)
|+.+|..++++ +|.+...+...+|.++|++|.
T Consensus 92 gi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 125 (542)
T 3u1f_A 92 DYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYL 125 (542)
T ss_dssp TCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEe
Confidence 99988655444 466666677889999999985
No 33
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.18 E-value=1.1e-10 Score=138.49 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=73.0
Q ss_pred EEEEeCCCCCCcCchhHHHH-HHHHHHHHHH--cCC---EEEEEeecCCc-------------ccchHHHHHHHHHHHHH
Q 004119 251 VLTRFPPEPNGYLHIGHAKA-MFVDFGLAKE--RGG---YCYLRYDDTNP-------------EAEKKEYIDHIEEIVQW 311 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRa-al~n~~~Ar~--~~G---~~iLRidDTDp-------------~r~~~e~~~~I~edL~w 311 (773)
++|==+|.|||.+||||+++ .++.+.+||. ..| .|+.-+|+... ..-..+|.+.+.+++++
T Consensus 5 ~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~ 84 (722)
T 1rqg_A 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQR 84 (722)
T ss_dssp EEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45666899999999999998 8888999883 345 45555555542 22356789999999999
Q ss_pred cCCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 312 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 312 LGi~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
||+.+|..+++++ |.+...+...+|.++|++|.
T Consensus 85 lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~ 119 (722)
T 1rqg_A 85 AKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVK 119 (722)
T ss_dssp HTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 9999987666665 66666778889999999875
No 34
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=98.69 E-value=1.2e-07 Score=114.02 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=67.6
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc---------c------------------------
Q 004119 252 LTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE---------A------------------------ 296 (773)
Q Consensus 252 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp~---------r------------------------ 296 (773)
++==+|.|||.|||||+++.++.+.+|| ...|.-+++.-.+|.- +
T Consensus 42 i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~ 121 (821)
T 1ile_A 42 VYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRE 121 (821)
T ss_dssp BCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHH
T ss_pred EecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHH
Confidence 3334789999999999999999999999 4567766666666520 1
Q ss_pred chHHHHHHHHHHHHHcC--CCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 297 EKKEYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 297 ~~~e~~~~I~edL~wLG--i~pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
...++.+.+.+.+++|| ++|+..+++++ |.........+|.++|++|.
T Consensus 122 ~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 173 (821)
T 1ile_A 122 SVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYR 173 (821)
T ss_dssp HTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeee
Confidence 11246777889999999 78888766655 33333344568999999886
No 35
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=98.64 E-value=7.7e-08 Score=104.64 Aligned_cols=181 Identities=20% Similarity=0.206 Sum_probs=115.4
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec----C----CcccchHHHHHHHHHHHHHcCCCCCC--
Q 004119 249 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----T----NPEAEKKEYIDHIEEIVQWMGWEPFK-- 318 (773)
Q Consensus 249 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD----T----Dp~r~~~e~~~~I~edL~wLGi~pd~-- 318 (773)
..|.+.| .|||.|||||...++.||......|..+++.|.| | ||+. ..+....+..++.++|++|++
T Consensus 13 ~~v~~G~--~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~-~~~~~~~~~~~~lA~Gldp~k~~ 89 (340)
T 2g36_A 13 MRILSGM--RPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSK-LKEYTRDLVRGFLACGIDPEKSV 89 (340)
T ss_dssp CEEEEEE--CCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTT-HHHHHHHHHHHHHHTTCCTTTSE
T ss_pred CeEEEee--CCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHH-HHHHHHHHHHHHHHhCCChhHeE
Confidence 3444554 5679999999998888998888888999999999 6 6654 566677777888899999984
Q ss_pred cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCC
Q 004119 319 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 398 (773)
Q Consensus 319 ~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~ 398 (773)
+..||+..+ +.+++. .+.|+++..++... .. |.+ . .-|++..
T Consensus 90 if~qS~~~~-~~el~~-------~l~~~~~v~~l~r~--~~----------------~k~----~------~~r~~~~-- 131 (340)
T 2g36_A 90 IFVQSGVKE-HAELAL-------LFSMIVSVSRLERV--PT----------------YKE----I------KSELNYK-- 131 (340)
T ss_dssp EEEGGGCTH-HHHHHH-------HHHTTSCHHHHHTC--HH----------------HHT----C---------------
T ss_pred EEECCchHH-HHHHHH-------HHHccCCHHHHHHh--HH----------------HHh----H------HHHhccC--
Confidence 778999754 334322 35688888876532 00 000 0 0011100
Q ss_pred CCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhC------CCCCc
Q 004119 399 NDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPY 472 (773)
Q Consensus 399 ~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg------~~~P~ 472 (773)
+..+ .| .-.||.-+= .|-.+.+.++++.|.|...+.....-|...++ +..|.
T Consensus 132 -~~~~----------------~g--~f~YPvLQA---aDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~ 189 (340)
T 2g36_A 132 -DLST----------------AG--FLIYPVLQA---ADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPE 189 (340)
T ss_dssp -CCCS----------------HH--HHTHHHHHH---HHHHTTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCE
T ss_pred -CCCC----------------hH--HhhhHHHHH---hhHHHhCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCch
Confidence 0000 00 012444333 33335789999999999988887777777653 23453
Q ss_pred ee--eeee-ccCCCceecccccc
Q 004119 473 VW--EYSR-LNVSNTVMSKRKLN 492 (773)
Q Consensus 473 ~w--~f~~-Ln~~g~kLSKRk~~ 492 (773)
.. +.++ .+++|+|||||.++
T Consensus 190 ~~~~~~~~l~gldG~KMSKS~~n 212 (340)
T 2g36_A 190 AILSRVPKLPGTDGRKMSKSYGN 212 (340)
T ss_dssp EEECCSCCCCCTTSSCCCGGGTC
T ss_pred hhhccccccCCCCccccCCCCCC
Confidence 22 2344 36789999999876
No 36
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=98.63 E-value=2.5e-07 Score=101.49 Aligned_cols=192 Identities=13% Similarity=0.073 Sum_probs=128.7
Q ss_pred cHHHHHHhhhh-cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec----CCc-c-c---chHHHHHHH
Q 004119 236 TKEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TNP-E-A---EKKEYIDHI 305 (773)
Q Consensus 236 ~~~~~~~h~~~-~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD----TDp-~-r---~~~e~~~~I 305 (773)
+++-|++.++. ..-.+.+-|.| ||.||||| ..++.+|......|..+++.|.| |++ . + ...+....+
T Consensus 22 ~~~~L~~~l~~~~~~~iy~G~~P--Tg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~ 98 (364)
T 2cya_A 22 TEEELKGLLASGARIKGYIGYEP--SGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIV 98 (364)
T ss_dssp THHHHHHHHHHCSCCEEEEEECC--CSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCEEEeccCC--CCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHH
Confidence 45667777865 34468888976 69999999 88888999888889999999999 332 1 2 345666778
Q ss_pred HHHHHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCc
Q 004119 306 EEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGR 383 (773)
Q Consensus 306 ~edL~wLGi~pd~--~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~ 383 (773)
..++.++|++|++ +.+||+.... ..+...++ .+.|++|..++.... .+ . +
T Consensus 99 ~~~~la~G~dp~k~~i~~qS~~~~~-~~~~~~~~----~l~~~~t~~~l~r~~--~~----k----------------~- 150 (364)
T 2cya_A 99 RRVMEAAGVPVERVRFVDAEELASD-KDYWGLVI----RVAKRASLARVRRAL--TI----M----------------G- 150 (364)
T ss_dssp HHHHHHTTCCGGGCEEEEHHHHHTC-HHHHHHHH----HHHHTSCHHHHHTTC---------------------------
T ss_pred HHHHHHhCCCccceEEEecchhhcc-hHHHHHHH----HHHCcCcHHHHHcCc--hh----h----------------h-
Confidence 8899999999976 6789987643 23444444 256788887775321 00 0 0
Q ss_pred ccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHH
Q 004119 384 IEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLL 463 (773)
Q Consensus 384 ~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~ 463 (773)
|.. .++. + . .+.-+|-.--+.|-...+.+|++.|.|-..+.....-|.
T Consensus 151 --------r~~----~~~~---------i-------~----~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~rdla 198 (364)
T 2cya_A 151 --------RRA----EEAE---------V-------D----ASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVA 198 (364)
T ss_dssp ----------C----CGGG---------S-------C----THHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHH
T ss_pred --------hhc----CCCC---------c-------c----chhhhhHHHHHhhHHhcCCCEEeccchHHHHHHHHHHHH
Confidence 000 0000 0 0 012233333333334578999999999999988888888
Q ss_pred HHhCCCCCceeeeeec-cCC-----------------Cceecccc
Q 004119 464 HALGLYQPYVWEYSRL-NVS-----------------NTVMSKRK 490 (773)
Q Consensus 464 ~aLg~~~P~~w~f~~L-n~~-----------------g~kLSKRk 490 (773)
..++...|...+.++| .++ |+|||||.
T Consensus 199 ~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~ 243 (364)
T 2cya_A 199 EKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSK 243 (364)
T ss_dssp TTTTCCCCEEEEECCCBCSSCC----------------CBCCSSS
T ss_pred HHcCCCCceeeccceeeCCCcccccccccccccccccccccCCCC
Confidence 9999888877666654 566 79999995
No 37
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=98.55 E-value=2.8e-07 Score=99.22 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=82.3
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec-CC------cccchHHHHHHHHHHH
Q 004119 237 KEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD-TN------PEAEKKEYIDHIEEIV 309 (773)
Q Consensus 237 ~~~~~~h~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD-TD------p~r~~~e~~~~I~edL 309 (773)
.+-|++.|+...-.+.+.|.| ||.||||| ..++.+|...+..|..+++.|-| |. ...+..++...+..++
T Consensus 17 ~~~l~~~L~~~~~~vy~G~~P--Tg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~ 93 (314)
T 2zp1_A 17 EEELREVLKKDEKSAYIGFEP--SGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVF 93 (314)
T ss_dssp HHHHHHHHTSSSEEEEEEECC--CSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEccCC--CCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHH
Confidence 566777777333368899998 58999999 88889999999889999999955 32 2245667788899999
Q ss_pred HHcCCCCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHh
Q 004119 310 QWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY 355 (773)
Q Consensus 310 ~wLGi~pd~~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~ 355 (773)
.++|++ ..+.+||+.... ..+...|+ .+.|+++..++...
T Consensus 94 ~a~G~d-~~~~~qs~~~~~-~~~~~~~~----~l~~~~t~~~l~~~ 133 (314)
T 2zp1_A 94 EAMGLK-AKYVYGSEFQLD-KDYTLNVY----RLALKTTLKRARRS 133 (314)
T ss_dssp HHTTCC-CEEEEGGGTTTS-HHHHHHHH----HHHHHSCHHHHHHH
T ss_pred HhcCCC-eEEEECChhhcc-hHHHHHHH----HHHCcCcHHHHhcc
Confidence 999998 667779998654 33444444 35678888877654
No 38
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=98.49 E-value=1e-07 Score=103.95 Aligned_cols=180 Identities=13% Similarity=0.117 Sum_probs=114.6
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec-------CCcccchHHHHHHHHHHHHHcCCCCC--CcCC
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD-------TNPEAEKKEYIDHIEEIVQWMGWEPF--KITY 321 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD-------TDp~r~~~e~~~~I~edL~wLGi~pd--~~~~ 321 (773)
|.+=|- |||.|||||...++.+|...+. +..+++.|.| .||+ +..+....+..++.++|++|+ .+.+
T Consensus 7 i~sG~~--PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~-~i~~~~~~~~~~~lA~Gldp~k~~if~ 82 (348)
T 2yy5_A 7 ALTGIQ--ASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQ-ALKQNNFDLVRTLLAVGLDPQKACLFL 82 (348)
T ss_dssp EEEEEC--CCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHH-HHHHHHHHHHHHHHHhCCChhHeEEEE
Confidence 445555 5699999999988899976666 7899999999 6665 455666777888999999998 4789
Q ss_pred CchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCC
Q 004119 322 TSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDN 401 (773)
Q Consensus 322 qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~ 401 (773)
||+..+ +.++.-.| .|.++..++..... + .+ +.. |...+
T Consensus 83 qS~~~~-~~el~w~l-------~~~~~~~~l~R~~~--~----------------k~----~~~------~~~~~----- 121 (348)
T 2yy5_A 83 QSDLLE-HSMMGYLM-------MVQSNLGELQRMTQ--F----------------KA----KKA------EQTRN----- 121 (348)
T ss_dssp GGGCHH-HHHHHHHH-------HHHSBHHHHHHCHH--H----------------HT----TC-----------------
T ss_pred CCcccc-hhHHHHHH-------HhhccHHHHhchHH--H----------------HH----HHH------hhccc-----
Confidence 999865 44433222 46777776654311 1 00 000 00000
Q ss_pred CCcCccEEEEEecCCCCCCCCc--cccccccccccccccccCCcceeecCcccccchHHHHHHHHHhC------CCCCce
Q 004119 402 FNMYDLIAYRIKFTPHPHAGDK--WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYV 473 (773)
Q Consensus 402 ~~~~D~V~~R~~~~~h~~~gd~--~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg------~~~P~~ 473 (773)
+.| . .+.. .-.||.-+=|.. .+.+.+|++.|.|...+.....-|...++ +..|..
T Consensus 122 --~~~----~--------~~~~~g~~~YPvLQaaDi---l~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~ 184 (348)
T 2yy5_A 122 --PNG----T--------LNIPTGLLTYPALMAGDI---LLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQF 184 (348)
T ss_dssp -------------------CCBTHHHHHHHHHHHHH---HTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_pred --ccc----C--------CCCChhhhhhHHHHHHHH---HHhCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCCee
Confidence 000 0 0000 022554444443 45789999999999988887777777764 445644
Q ss_pred eee---ee-ccCCC--ceecccccc
Q 004119 474 WEY---SR-LNVSN--TVMSKRKLN 492 (773)
Q Consensus 474 w~f---~~-Ln~~g--~kLSKRk~~ 492 (773)
..- ++ .+++| +|||||.++
T Consensus 185 l~~~~~~~l~gL~g~~~KMSKS~~n 209 (348)
T 2yy5_A 185 VQNKDTNRIMDLFDPTKKMSKSSKN 209 (348)
T ss_dssp ECCTTTTTCBCSSCTTSBCCSSCSC
T ss_pred ecccccccccCCCCcchhcCCCCCC
Confidence 442 33 36677 899999987
No 39
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=98.37 E-value=8.2e-07 Score=96.13 Aligned_cols=176 Identities=18% Similarity=0.156 Sum_probs=111.9
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec----CCcc--cchHHHHHHHHHHHHHcCCCCCC--cCCC
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TNPE--AEKKEYIDHIEEIVQWMGWEPFK--ITYT 322 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidD----TDp~--r~~~e~~~~I~edL~wLGi~pd~--~~~q 322 (773)
|.+=|- |||.|||||...++.+|..... |..+++.|.| |+|. .+..+....+..++-++|++|++ +.+|
T Consensus 4 vysG~~--PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~q 80 (328)
T 1i6k_A 4 IFSGIQ--PSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQ 80 (328)
T ss_dssp EEEEEC--CCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEec
Confidence 344444 5699999999988899987755 8899999999 8532 24456677788889999999984 7789
Q ss_pred chhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCC
Q 004119 323 SDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNF 402 (773)
Q Consensus 323 Sd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~ 402 (773)
|++.+ +.+.+-.| .|.++..++.... -|.+... + + + ..
T Consensus 81 S~~~~-~~~l~w~l-------~~~~~~~~l~r~~------------------~~k~~~~-~---~--------~----~~ 118 (328)
T 1i6k_A 81 SEVPA-HAQAAWML-------QCIVYIGELERMT------------------QFKEKSA-G---K--------E----AV 118 (328)
T ss_dssp GGCTH-HHHHHHHH-------HHHSCHHHHHTCH------------------HHHHHHT-T---C--------S----SC
T ss_pred Cchhh-hhHHHHHH-------hccccHHHHHHHH------------------HHHHHHh-c---c--------C----CC
Confidence 99754 44444323 2566665554221 0111100 0 0 0 00
Q ss_pred CcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHhC------CCCCceee-
Q 004119 403 NMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWE- 475 (773)
Q Consensus 403 ~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aLg------~~~P~~w~- 475 (773)
+ .| .-.||.-+=+ |-.+.+.++++.|.|...|.....-|...++ +..|....
T Consensus 119 ~----------------~g--~f~YPvLQaa---Dil~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~ 177 (328)
T 1i6k_A 119 S----------------AG--LLTYPPLMAA---DILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIP 177 (328)
T ss_dssp C----------------HH--HHTHHHHHHH---HHHTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECC
T ss_pred C----------------ch--hhccHHHHHH---HHHHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCeeeec
Confidence 0 00 0124443333 3345789999999999988888777777765 33454332
Q ss_pred --eee-ccCCC--ceecccccc
Q 004119 476 --YSR-LNVSN--TVMSKRKLN 492 (773)
Q Consensus 476 --f~~-Ln~~g--~kLSKRk~~ 492 (773)
.++ .+++| +|||||.++
T Consensus 178 ~~~~~l~gl~G~~~KMSKS~~n 199 (328)
T 1i6k_A 178 KVGARIMSLVDPTKKMSKSDPN 199 (328)
T ss_dssp SSSSSCBCSSCTTSBCCTTCSC
T ss_pred cccccccCCCCCccCCCCCCCC
Confidence 233 36788 899999987
No 40
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=98.32 E-value=1.1e-06 Score=95.90 Aligned_cols=182 Identities=16% Similarity=0.106 Sum_probs=112.9
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcc------cchHHHHHHHHHHHHHcCCCCCC--cC
Q 004119 249 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPE------AEKKEYIDHIEEIVQWMGWEPFK--IT 320 (773)
Q Consensus 249 g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~------r~~~e~~~~I~edL~wLGi~pd~--~~ 320 (773)
-.|.+.|.| ||.|||||...++.+|...+.....+++.-|++.-. .+..+....+..++.++|++|++ +.
T Consensus 23 ~~vysG~~P--TG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~ 100 (351)
T 1yi8_B 23 PRVLTGDRP--TGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCV 100 (351)
T ss_dssp SEEEEEECC--SSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEEE
T ss_pred cEEEEeeCC--CCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEE
Confidence 468899987 599999999988889975554444566665554211 23556667788889999999984 77
Q ss_pred CCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCC
Q 004119 321 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 400 (773)
Q Consensus 321 ~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~ 400 (773)
+||+..+ +.+++ ..|.|+++..+|... .+..+.+. +.|. .
T Consensus 101 ~qS~~~~-~~el~-------~~l~~~~~v~~l~r~-----------~~~k~~~~-----~~~f-~--------------- 140 (351)
T 1yi8_B 101 VQSAVPE-LAELT-------VYFLNLVTVSHLRQN-----------PTVKAEIA-----QKGY-G--------------- 140 (351)
T ss_dssp EGGGCTH-HHHHH-------HHHHTTSBHHHHHTC-----------HHHHHHHH-----HHTC-T---------------
T ss_pred EcCchhh-HHHHH-------HHHhccCCHHHHHhh-----------hHHHHHHh-----hcCC-C---------------
Confidence 8999754 33322 246799988877531 11111110 0000 0
Q ss_pred CCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHh----C--CCCCcee
Q 004119 401 NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL----G--LYQPYVW 474 (773)
Q Consensus 401 ~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aL----g--~~~P~~w 474 (773)
.+.. .+.-+|-.--+.|-.+.+.++++.|.|...|.....-|.+.+ | +..|...
T Consensus 141 -------------------~~~~-~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~ 200 (351)
T 1yi8_B 141 -------------------ERVP-AGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQ 200 (351)
T ss_dssp -------------------TCCB-HHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEE
T ss_pred -------------------CCCc-hHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeee
Confidence 0000 112233333333333578999999999998888877777655 3 3445322
Q ss_pred --eeee-ccCCCc-eecccccc
Q 004119 475 --EYSR-LNVSNT-VMSKRKLN 492 (773)
Q Consensus 475 --~f~~-Ln~~g~-kLSKRk~~ 492 (773)
+.++ .+++|+ |||||.++
T Consensus 201 ~~~~~~l~~ldG~~KMSKS~~n 222 (351)
T 1yi8_B 201 LSRVPRLPGLDGQAKMSKSLGN 222 (351)
T ss_dssp ECSSCSCCCTTSSSCCCTTTTC
T ss_pred eecCccccCCCCccccCCCCCC
Confidence 2344 367897 99999987
No 41
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=98.19 E-value=3e-06 Score=92.00 Aligned_cols=172 Identities=16% Similarity=0.138 Sum_probs=108.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcC-CEEEEEeecC----C---cc-cchHHHHHHHHHHHHHcCCCCCC--cCCCchhH
Q 004119 258 EPNGYLHIGHAKAMFVDFGLAKERG-GYCYLRYDDT----N---PE-AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYF 326 (773)
Q Consensus 258 sPtG~LHIGhaRaal~n~~~Ar~~~-G~~iLRidDT----D---p~-r~~~e~~~~I~edL~wLGi~pd~--~~~qSd~~ 326 (773)
.|||.|||||...++.+|...+..| ..+++-|-|- + +. ....+....+..++.++|++|++ +..||+..
T Consensus 9 ~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~ 88 (337)
T 2el7_A 9 QPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTLFVQSHVP 88 (337)
T ss_dssp CSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGST
T ss_pred CCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEEEEcCcch
Confidence 4669999999998888998777777 6888889882 2 22 23456677778888899999984 77899986
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCc
Q 004119 327 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 406 (773)
Q Consensus 327 ~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D 406 (773)
+ +.+++. .+.|+++..++... -+ |.+. ...+ ...+
T Consensus 89 ~-~~el~~-------~l~~~~~~~~l~r~-----------~~-------~k~r----~~~~------------~~~~--- 123 (337)
T 2el7_A 89 E-HTELSW-------VFTTLTPLGDLTRM-----------TQ-------FKDK----ASKQ------------ETVW--- 123 (337)
T ss_dssp H-HHHHHH-------HHHHTSBHHHHHTS-----------HH-------HHHH----TTSS------------SCCB---
T ss_pred h-hHHHHH-------HHHccCCHHHHHHh-----------HH-------HHHH----hccC------------CCCC---
Confidence 4 444332 25678877776522 00 1100 0000 0000
Q ss_pred cEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHHHHHHHHh----C--CCCCceeee---e
Q 004119 407 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL----G--LYQPYVWEY---S 477 (773)
Q Consensus 407 ~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q~~L~~aL----g--~~~P~~w~f---~ 477 (773)
.| --.||.-+=+ |-.+.+.++++.|.|...|.....-|.+.+ | +..|....- +
T Consensus 124 -------------~g--~f~YPvLQaa---Dil~~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p 185 (337)
T 2el7_A 124 -------------SG--LLMYPVLQAA---DILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAP 185 (337)
T ss_dssp -------------HH--HHHHHHHHHH---HHHHTTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSC
T ss_pred -------------hH--HHHhHHHHHh---hHHhhCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccc
Confidence 00 0124433333 333478999999999988887777776654 5 445643332 3
Q ss_pred e-ccCCC-ceecccccc
Q 004119 478 R-LNVSN-TVMSKRKLN 492 (773)
Q Consensus 478 ~-Ln~~g-~kLSKRk~~ 492 (773)
+ .+++| +|||||.++
T Consensus 186 ~l~gldG~~KMSKS~~n 202 (337)
T 2el7_A 186 RVPGIDGKAKMSKSLGN 202 (337)
T ss_dssp CCBCTTSSSBCCTTTTC
T ss_pred cccCCCCccccCCCCCC
Confidence 4 36789 999999987
No 42
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=97.97 E-value=1e-05 Score=97.85 Aligned_cols=94 Identities=19% Similarity=0.243 Sum_probs=69.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC---c-------------ccchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN---P-------------EAEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD---p-------------~r~~~e~~~~I~edL~wL 312 (773)
+++=-+|.|||.|||||+|++++.+.+||. ..|.-++..-.+| . ..-..++++.|.++|+.|
T Consensus 56 ~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~L 135 (880)
T 4arc_A 56 YCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKML 135 (880)
T ss_dssp EEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 344457999999999999999999999983 4566555544443 1 122456788999999999
Q ss_pred CCCCC--CcCC--CchhHHHHHHHHHHHHHcCCccc
Q 004119 313 GWEPF--KITY--TSDYFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 313 Gi~pd--~~~~--qSd~~~~~y~~a~~LI~~G~AY~ 344 (773)
|+..| ..++ ..+|.........+|.++|++|.
T Consensus 136 Gis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~ 171 (880)
T 4arc_A 136 GFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYK 171 (880)
T ss_dssp TCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 98765 4433 44566666677789999999886
No 43
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=97.94 E-value=1.6e-05 Score=96.39 Aligned_cols=94 Identities=24% Similarity=0.288 Sum_probs=70.8
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEE---eecCCc-------------ccchHHHHHHHHHHHHHc
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLR---YDDTNP-------------EAEKKEYIDHIEEIVQWM 312 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLR---idDTDp-------------~r~~~e~~~~I~edL~wL 312 (773)
+++=-+|.|||.|||||+|+.++.+.+||. ..|.-++. +|+... ..-..++++.+.++++.|
T Consensus 36 ~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~L 115 (878)
T 2v0c_A 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLM 115 (878)
T ss_dssp EEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 455457999999999999999999999983 34554554 444432 123467899999999999
Q ss_pred CCCCC--Cc--CCCchhHHHHHHHHHHHHHcCCccc
Q 004119 313 GWEPF--KI--TYTSDYFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 313 Gi~pd--~~--~~qSd~~~~~y~~a~~LI~~G~AY~ 344 (773)
|+..| .. +..++|.........+|.++|++|.
T Consensus 116 Gi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~ 151 (878)
T 2v0c_A 116 GILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYR 151 (878)
T ss_dssp TCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 98765 43 4555677777778889999999986
No 44
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=97.88 E-value=2.1e-05 Score=94.43 Aligned_cols=94 Identities=20% Similarity=0.170 Sum_probs=69.4
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC---c-------------------------------
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN---P------------------------------- 294 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD---p------------------------------- 294 (773)
+++--+|.|||.|||||+++.++.+.+|| ...|.-++++--+| .
T Consensus 37 ~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~ 116 (810)
T 1wkb_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (810)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHH
T ss_pred EEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHH
Confidence 67888999999999999999999999999 56788888753222 1
Q ss_pred ------ccchHHHHHHHHHHHHHcCCCCC--CcCCCch----hHHHHHHHHHHHHHcCCccc
Q 004119 295 ------EAEKKEYIDHIEEIVQWMGWEPF--KITYTSD----YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 295 ------~r~~~e~~~~I~edL~wLGi~pd--~~~~qSd----~~~~~y~~a~~LI~~G~AY~ 344 (773)
..-..++.+.|.+++++||+..| ..+++++ |.........+|.++|++|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~ 178 (810)
T 1wkb_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (810)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEE
Confidence 01123456889999999998755 5555554 33334455678999999875
No 45
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=97.64 E-value=0.00064 Score=75.16 Aligned_cols=171 Identities=19% Similarity=0.271 Sum_probs=104.2
Q ss_pred eEEEEeCCCCCCcCchhHHHHHH-HHHHHHHHcCCEEEEEeecC-----Cc---ccchHHHHHHHHHHHHHcCCCCCC--
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDT-----NP---EAEKKEYIDHIEEIVQWMGWEPFK-- 318 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal-~n~~~Ar~~~G~~iLRidDT-----Dp---~r~~~e~~~~I~edL~wLGi~pd~-- 318 (773)
.+.+=|.| ||.|||||.-.++ .+| +-..+|..+++=|-|- ++ .....++...+..++-++|++|++
T Consensus 75 ~i~sG~~P--TG~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~ 151 (392)
T 3jxe_A 75 FLYTGRGP--SGPMHIGHIIPFFATKW-LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTF 151 (392)
T ss_dssp EEEEEECC--SSCCBHHHHHHHHHHHH-HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEE
T ss_pred EEEeccCC--CCchhHHHHHHHHHHHH-HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceE
Confidence 45666665 5999999999885 678 4445777655555553 22 123445566677778889999986
Q ss_pred cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcCcccCCceEEEEEecCC
Q 004119 319 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 398 (773)
Q Consensus 319 ~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~ 398 (773)
+.+||++.+ |++.+..|- |..|-.++.+.- ++. ...+.
T Consensus 152 i~~qS~~~~-~~~~~~~l~-------~~~t~~~~~~~~--~~~---~~~~~----------------------------- 189 (392)
T 3jxe_A 152 IFQNSEFTK-IYEMAIPIA-------KKINFSMAKAVF--GFT---EQSKI----------------------------- 189 (392)
T ss_dssp EEETTTSTH-HHHHHHHHH-------HHSBHHHHHHHH--CCC---TTSBH-----------------------------
T ss_pred EEECchhHH-HHHHHHHHH-------hhCCHHHHhhhh--ccC---CCCch-----------------------------
Confidence 778999876 666666552 444444443210 000 00000
Q ss_pred CCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccC-CcceeecCcccccchHHHHHHHHHhCCCCCceeeee
Q 004119 399 NDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE-NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYS 477 (773)
Q Consensus 399 ~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~-gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~ 477 (773)
| --.||..+-|..+ .. .-+++..|.|-..+-..-.-|...+|...|.....+
T Consensus 190 ----------------------g--~f~YP~LQaaDil---~~~~a~~vpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~ 242 (392)
T 3jxe_A 190 ----------------------G--MIFFPAIQIAPTF---FERKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSK 242 (392)
T ss_dssp ----------------------H--HHHHHHHHHGGGG---SSSSCEEEEEEGGGHHHHHHHHHHTGGGTSCCCEEEEEC
T ss_pred ----------------------H--HHHHHHHHHhhHH---hhcCCceeecccchHHHHHHHHHHHHHcCCCCCeeeecc
Confidence 0 0124444444333 23 256788888776665555556677888788766555
Q ss_pred ec-cCCC--ceecccccc
Q 004119 478 RL-NVSN--TVMSKRKLN 492 (773)
Q Consensus 478 ~L-n~~g--~kLSKRk~~ 492 (773)
++ .++| +||||+..+
T Consensus 243 ~l~gLdG~~~KMSKS~~n 260 (392)
T 3jxe_A 243 FVPSLTSLSGKMSASKPE 260 (392)
T ss_dssp CCCCSSCSSSCCCTTSGG
T ss_pred cccCCCCCccccccCCCC
Confidence 54 6677 599999976
No 46
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=97.56 E-value=6.4e-05 Score=91.47 Aligned_cols=94 Identities=20% Similarity=0.187 Sum_probs=68.3
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------c-----c-------cchHH
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------P-----E-------AEKKE 300 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----------------p-----~-------r~~~e 300 (773)
+++==+|.|||.||||||++.++-+.+||. ..|.-++..-.+| | + .-..+
T Consensus 51 ~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~ 130 (917)
T 1ffy_A 51 ILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALE 130 (917)
T ss_dssp CEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHH
T ss_pred eeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHH
Confidence 445558999999999999999999999994 4566555554444 1 0 12346
Q ss_pred HHHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004119 301 YIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 301 ~~~~I~edL~wLGi~--pd~~~~qSd--~~~~~y~~a~~LI~~G~AY~ 344 (773)
+++.+.++++.||+. |+..+.+.+ |.........+|.++|++|.
T Consensus 131 ~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr 178 (917)
T 1ffy_A 131 QIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYK 178 (917)
T ss_dssp HHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEe
Confidence 788999999999994 777766655 33333345568999999886
No 47
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=97.51 E-value=0.00017 Score=87.25 Aligned_cols=94 Identities=21% Similarity=0.224 Sum_probs=71.4
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc------------------cc-------------
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE------------------AE------------- 297 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTDp~------------------r~------------- 297 (773)
+++=-+|.|||.|||||+++.++-+.+||. ..|.-++..-.+|.- +.
T Consensus 37 ~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~ 116 (862)
T 1gax_A 37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQ 116 (862)
T ss_dssp EEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHH
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHH
Confidence 455558999999999999999999999994 578888888777721 00
Q ss_pred -hHHHHHHHHHHHHHcCCCCC--CcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 004119 298 -KKEYIDHIEEIVQWMGWEPF--KITYTS--DYFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 298 -~~e~~~~I~edL~wLGi~pd--~~~~qS--d~~~~~y~~a~~LI~~G~AY~ 344 (773)
..+|.+.|.+.++.||+..| ..+++. +|.........+|.++|++|.
T Consensus 117 ~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYr 168 (862)
T 1gax_A 117 WKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYR 168 (862)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 35778899999999998654 443333 454445566679999999887
No 48
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=97.50 E-value=0.00013 Score=78.83 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=59.3
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-cchHHHHHHHHHHHHHcCCCCCC--cCCCchhHHHH
Q 004119 258 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQEL 329 (773)
Q Consensus 258 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-r~~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~~~ 329 (773)
.|||.|||||...++.+|..-.. |..+++-|-|. |+. .+..+....+..++.++|++|++ +..||+..+ +
T Consensus 11 ~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~-~ 88 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKE-V 88 (322)
T ss_dssp CCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTH-H
T ss_pred CCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcchh-H
Confidence 57899999999987888765444 66666666653 222 23455666677788889999975 778999764 4
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHH
Q 004119 330 YELAVELIRRGHAYVDHQTPEEIK 353 (773)
Q Consensus 330 y~~a~~LI~~G~AY~C~cs~eel~ 353 (773)
.+++.. +-|+++-.++.
T Consensus 89 ~el~~~-------l~~~~~~~~l~ 105 (322)
T 3tzl_A 89 MELYWI-------LSQFTPMGLLE 105 (322)
T ss_dssp HHHHHH-------HGGGCBHHHHH
T ss_pred HHHHHH-------HhccCcHHHHH
Confidence 444332 24778777664
No 49
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=97.40 E-value=0.0014 Score=72.29 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=56.4
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHH-HHHHHHHHHcCCEEEEEeecC--------CcccchHHHHHHHHHHHHHcCCCCCC
Q 004119 248 GGNVLTRFPPEPNGYLHIGHAKAM-FVDFGLAKERGGYCYLRYDDT--------NPEAEKKEYIDHIEEIVQWMGWEPFK 318 (773)
Q Consensus 248 ~g~v~tRFaPsPtG~LHIGhaRaa-l~n~~~Ar~~~G~~iLRidDT--------Dp~r~~~e~~~~I~edL~wLGi~pd~ 318 (773)
++.++.=-.=.|||.|||||...+ +.+| +-+.+|..+++=|.|. +++ +..++......++-.+|++|++
T Consensus 80 ~~~~~vysG~~PTG~lHLGh~v~~~~~~~-lQ~~~g~~v~i~I~D~~a~~~r~~~~e-~i~~~~~~~~~~~lA~GlDp~k 157 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEEYITLEFARY-LQDAFNIQVIIQILDDIKVLNREATIN-EASKMSNDLMKYILAFGFNEDK 157 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGGHHHHHHHHH-HHHHHCCEEEEEECHHHHHHTTSCCHH-HHHHHHHHHHHHHHHTCCCGGG
T ss_pred CCCeEEEeccCCCCCccHHHHHHHHHHHH-HHHhcCCeEEEEeCchHHhhcCCCCHH-HHHHHHHHHHHHHHHcCCCCcc
Confidence 333333334467899999999999 7788 5555677777768773 222 2344455566777788999975
Q ss_pred --cCCCchhHHHHHHHHHH
Q 004119 319 --ITYTSDYFQELYELAVE 335 (773)
Q Consensus 319 --~~~qSd~~~~~y~~a~~ 335 (773)
+..||++...++..+.+
T Consensus 158 t~i~~qS~~~~~~~~~~~~ 176 (386)
T 3hzr_A 158 TFIYTDYQYFGKMYRTISL 176 (386)
T ss_dssp EEEEEHHHHHHHHHHHHHH
T ss_pred eEEEeccHHHHHHHHHHHH
Confidence 66789887644444433
No 50
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=97.35 E-value=0.00013 Score=89.21 Aligned_cols=94 Identities=21% Similarity=0.175 Sum_probs=66.4
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC-----------------------------------
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------------------------- 293 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD----------------------------------- 293 (773)
+++==+|.|||.|||||+++.++-+.+||. ..|.-+|+.-..|
T Consensus 37 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~ 116 (967)
T 1wz2_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (967)
T ss_dssp BEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH
T ss_pred EEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH
Confidence 455668999999999999999999999984 4666666543222
Q ss_pred -----cccchHHHHHHHHHHHHHcCCC--CCCcCCCch----hHHHHHHHHHHHHHcCCccc
Q 004119 294 -----PEAEKKEYIDHIEEIVQWMGWE--PFKITYTSD----YFQELYELAVELIRRGHAYV 344 (773)
Q Consensus 294 -----p~r~~~e~~~~I~edL~wLGi~--pd~~~~qSd----~~~~~y~~a~~LI~~G~AY~ 344 (773)
+..-...|.+.+.++++.||+. |+..+.+.+ |.........+|.++|++|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr 178 (967)
T 1wz2_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (967)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEE
Confidence 1111335668899999999985 656666665 33333344568899999886
No 51
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=97.33 E-value=0.00085 Score=74.22 Aligned_cols=92 Identities=21% Similarity=0.217 Sum_probs=59.0
Q ss_pred HHHHHHhhhhc-CCeEEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEEeecCC--------cccchHHHHHHH
Q 004119 237 KEVLDKHLEVT-GGNVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDTN--------PEAEKKEYIDHI 305 (773)
Q Consensus 237 ~~~~~~h~~~~-~g~v~tRFaPsPt-G~LHIGhaRaal-~n~~~Ar~~~G~~iLRidDTD--------p~r~~~e~~~~I 305 (773)
.+.+.++++.. .=.+.+=| .|| |.|||||.-.++ ++| +-+.++..+++-|-|-- ...+..++...+
T Consensus 62 ~~~l~~~l~~g~~~~vy~G~--~PTa~~lHlGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~ 138 (393)
T 3hv0_A 62 FEKILDVYEKGELFYLYTGR--GPSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYEN 138 (393)
T ss_dssp HHHHHHHHHTTCCCEEEEEE--CCSSSSCBSTTHHHHHHHHH-HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEeCC--CCCCCCccHHHHHHHHHHHH-HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHH
Confidence 33344444432 22344444 567 689999999988 777 55666667788887732 112234556667
Q ss_pred HHHHHHcCCCCCC--cCCCchhHHHHHH
Q 004119 306 EEIVQWMGWEPFK--ITYTSDYFQELYE 331 (773)
Q Consensus 306 ~edL~wLGi~pd~--~~~qSd~~~~~y~ 331 (773)
..++..+|++|++ +..||+....++.
T Consensus 139 ~~~~lA~GlDp~kt~i~~ns~~~~~~~~ 166 (393)
T 3hv0_A 139 MKDIIACGFDPELTFIFTNLEYIAELYP 166 (393)
T ss_dssp HHHHHTTCCCTTTEEEEEHHHHHHHHHH
T ss_pred HHHHHHcCCCCcceEEEECCHHHHHHHH
Confidence 7788889999976 5678888765543
No 52
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=97.15 E-value=0.00053 Score=76.77 Aligned_cols=192 Identities=18% Similarity=0.156 Sum_probs=105.2
Q ss_pred cHHHHHHhhhhc-CCeEEEEeCCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-----c------c
Q 004119 236 TKEVLDKHLEVT-GGNVLTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------E 297 (773)
Q Consensus 236 ~~~~~~~h~~~~-~g~v~tRFaPsPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-----r------~ 297 (773)
+.+-|.+.|+.. .-.+.+=| -||| .|||||.- ++.++..-...|..+++=|-|- ||. | .
T Consensus 24 ~~~~L~~~L~~~~~~~vy~G~--dPTg~sLHlGh~v-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~ 100 (432)
T 1h3f_A 24 PEEELLAKLKEGRPLTVKLGA--DPTRPDLHLGHAV-VLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEE 100 (432)
T ss_dssp THHHHHHHHHTCSCCEEEEEE--CTTCCSCBHHHHH-HHHHHHHHHHTTCEEEEEECCCC--------------------
T ss_pred CHHHHHHHHhcCCCcEEEEcc--cCCCCCCchhhHH-HHHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHH
Confidence 366677777522 22344444 5677 49999999 5778877777777777777763 342 1 1
Q ss_pred hHHHHHHHHHHHHHcCCC--CCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHh
Q 004119 298 KKEYIDHIEEIVQWMGWE--PFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESL 373 (773)
Q Consensus 298 ~~e~~~~I~edL~wLGi~--pd~--~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l 373 (773)
..+....|...+. .|++ |++ +.+||+....++ ...+++ +.|+.|...+.+. . +...
T Consensus 101 i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~--~~~~l~----l~~~~tv~~ml~~----------~-~~k~-- 160 (432)
T 1h3f_A 101 TRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLT--FKEVVR----LTSLMTVAQMLER----------E-DFKK-- 160 (432)
T ss_dssp -HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCB--HHHHHH----HHTTSBHHHHTTS----------H-HHHH--
T ss_pred HHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCc--HHHHHH----HhCcCcHHHHHhh----------h-hHHH--
Confidence 2233444444432 5777 764 678998754321 112222 2244444433110 0 0000
Q ss_pred HHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccc
Q 004119 374 KLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFE 453 (773)
Q Consensus 374 ~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~ 453 (773)
++..+ ...++ +-.+|-.--+.|=...+.++++.|.|-.
T Consensus 161 ----r~~~~-----------------~~is~---------------------~ef~YPlLQaaDil~l~~~l~~gG~DQ~ 198 (432)
T 1h3f_A 161 ----RYEAG-----------------IPISL---------------------HELLYPFAQAYDSVAIRADVEMGGTDQR 198 (432)
T ss_dssp ----HHHTT-----------------CCCBG---------------------GGGTHHHHHHHHHHHHTCSEEEEEGGGH
T ss_pred ----HhhcC-----------------CCCCc---------------------cccchhhHHhhhhhhcCccEEEechHHH
Confidence 01000 00000 0112222223333344688999999998
Q ss_pred cchHHHHHHHHHhCCCCCceeeeeec-cCCCc-eecccccc
Q 004119 454 TRRASYFWLLHALGLYQPYVWEYSRL-NVSNT-VMSKRKLN 492 (773)
Q Consensus 454 ~~~~~q~~L~~aLg~~~P~~w~f~~L-n~~g~-kLSKRk~~ 492 (773)
.|-..-.-|...+|...|.....+.| ..+|+ ||||+.++
T Consensus 199 ~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n 239 (432)
T 1h3f_A 199 FNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDN 239 (432)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTC
T ss_pred HHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCC
Confidence 88877777888888766655555554 67896 99999976
No 53
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=97.10 E-value=0.0028 Score=70.90 Aligned_cols=188 Identities=14% Similarity=0.116 Sum_probs=99.3
Q ss_pred HHHHHHhhhhc-CCeEEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEEeec----CC-cc---cchHHHHHHH
Q 004119 237 KEVLDKHLEVT-GGNVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDD----TN-PE---AEKKEYIDHI 305 (773)
Q Consensus 237 ~~~~~~h~~~~-~g~v~tRFaPsPt-G~LHIGhaRaal-~n~~~Ar~~~G~~iLRidD----TD-p~---r~~~e~~~~I 305 (773)
.+.+.+.++.. .=.|.+=| -|| |.|||||.-.++ ++| +-+.+|..+++=|-| +. |. ....++...+
T Consensus 90 ~~~l~~~l~~g~~~~vy~G~--dPTag~LHLGh~v~~~~l~~-lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~ 166 (432)
T 2ip1_A 90 FTKILDLYEQGKPFFLYTGR--GPSSDSMHLGHMIPFVFTKW-LQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFAREN 166 (432)
T ss_dssp HHHHHHHHHHTCCCEEEEEE--CCCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEee--cCCCCCccHHHHHHHHHHHH-HHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHH
Confidence 33444555442 22445555 467 789999999876 576 444477776666666 32 21 2344556666
Q ss_pred HHHHHHcCCCCCC--cCCCchhH-HHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHhhcC
Q 004119 306 EEIVQWMGWEPFK--ITYTSDYF-QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNG 382 (773)
Q Consensus 306 ~edL~wLGi~pd~--~~~qSd~~-~~~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m~~G 382 (773)
..++-.+|++|++ +..||++. ..+++.+..+ .+ ..+.+++++. +.. -...+.- +
T Consensus 167 ~~~~lA~GlDp~k~~i~~nSd~~~~~~~~~~~~v-~r------m~~~~~~k~r----~~~-~~~~s~g----~------- 223 (432)
T 2ip1_A 167 AKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRV-SR------QITGSTAKAV----FGF-NDSDCIG----K------- 223 (432)
T ss_dssp HHHHHTTTCCGGGEEEEEHHHHCSHHHHHHHHHH-HT------SCCHHHHHHT----TCC-CTTSCHH----H-------
T ss_pred HHHHHHhCCCCCceEEEeCchhhhhhHHHHHHHH-Hh------hhcHHHHHHH----hCC-CCCCchh----h-------
Confidence 7777778999874 67899875 2344444321 00 1122222210 000 0000110 0
Q ss_pred cccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccc---ccccccccccc-----CCcceeecCccccc
Q 004119 383 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPS---YDYAHCIVDSI-----ENITHSLCTLEFET 454 (773)
Q Consensus 383 ~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~Pt---Y~fa~~VDD~~-----~gITHviRg~E~~~ 454 (773)
-.||. ||+-+.-.|.. .+-+++..|.|-..
T Consensus 224 ------------------------------------------f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~DQ~~ 261 (432)
T 2ip1_A 224 ------------------------------------------FHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDP 261 (432)
T ss_dssp ------------------------------------------HHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGGGHH
T ss_pred ------------------------------------------hhHHHHHHHHHHHhccchhhcccCCCceEEEeccCcHH
Confidence 01332 22222211221 34678888988877
Q ss_pred chHHHHHHHHHhCCCCCceeeeeec-cCCC--ceecccccc
Q 004119 455 RRASYFWLLHALGLYQPYVWEYSRL-NVSN--TVMSKRKLN 492 (773)
Q Consensus 455 ~~~~q~~L~~aLg~~~P~~w~f~~L-n~~g--~kLSKRk~~ 492 (773)
|-..-.-|...+|+..|...+.++| .++| +||||+.++
T Consensus 262 ~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~n 302 (432)
T 2ip1_A 262 YFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDT 302 (432)
T ss_dssp HHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGG
T ss_pred HHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCC
Confidence 7666566678889888876555554 6788 899999877
No 54
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=97.02 E-value=0.0028 Score=70.14 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=47.7
Q ss_pred CCCCCC-cCchhHHHHH-HHHHHHHHHcCCEEEEEeecC-------CcccchHHHHHHHHHHHHHcCCCCCC--cCCCch
Q 004119 256 PPEPNG-YLHIGHAKAM-FVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSD 324 (773)
Q Consensus 256 aPsPtG-~LHIGhaRaa-l~n~~~Ar~~~G~~iLRidDT-------Dp~r~~~e~~~~I~edL~wLGi~pd~--~~~qSd 324 (773)
.=.||| .|||||.-.+ +.+| +-+.++..+++-|-|- .+..+..++...+..++-.+|++|++ +..||+
T Consensus 84 G~~PTg~~lHLGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~ 162 (395)
T 3i05_A 84 GRGPSSESMHMGHLIPFMFTKW-LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFD 162 (395)
T ss_dssp EECCCSSCCBGGGSHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHH
T ss_pred eecCCCccchHHHHHHHHHHHH-HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCH
Confidence 336789 7999999988 6677 5555666666666654 11223445666777788889999986 456666
Q ss_pred hHH
Q 004119 325 YFQ 327 (773)
Q Consensus 325 ~~~ 327 (773)
...
T Consensus 163 ~~~ 165 (395)
T 3i05_A 163 YMG 165 (395)
T ss_dssp HTT
T ss_pred HHH
Confidence 543
No 55
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=97.01 E-value=0.0089 Score=65.71 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=68.4
Q ss_pred cHHHHHHhhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-cc---hHHHH-HH
Q 004119 236 TKEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-AE---KKEYI-DH 304 (773)
Q Consensus 236 ~~~~~~~h~~~~-~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-r~---~~e~~-~~ 304 (773)
+.+.|.++++.. .-.+.+=|-| ||.|||||.-.++.++..-...|..+++=|-|- ||. +. ..+.. ..
T Consensus 20 ~~~~l~~~l~~~~~~~vy~G~~P--Tg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~ 97 (375)
T 2cyc_A 20 TVENLRHLFEIGAPLQHYIGFEI--SGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKY 97 (375)
T ss_dssp THHHHHHHHHHTCCCBEEEEECC--CSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCcEEEeCCCC--CCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHH
Confidence 356677777653 3456666765 589999995556778877777777777777762 331 11 22333 33
Q ss_pred HH----HHHHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHH
Q 004119 305 IE----EIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 353 (773)
Q Consensus 305 I~----edL~wLGi~pd~--~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~ 353 (773)
+. .++..+|++|++ +..||+..... .+...++. +-|+++-.++.
T Consensus 98 ~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~-~~~~~~~~----~~~~~~~~~m~ 147 (375)
T 2cyc_A 98 FKVGMEKSIEVMGGDPKKVEFVLASEILEKG-DYWQTVID----ISKNVTLSRVM 147 (375)
T ss_dssp HHHHHHHHHHHTTCCGGGSEEEETHHHHTBH-HHHHHHHH----HHTTSBHHHHH
T ss_pred HHHHHHHHHHHhCCCccceEEEEcchhhhhh-HHHHHHHH----HhceeEHHHHh
Confidence 44 778899999874 67899876543 33333332 33455555554
No 56
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=96.91 E-value=0.012 Score=65.80 Aligned_cols=82 Identities=9% Similarity=-0.050 Sum_probs=51.6
Q ss_pred CcceeecCcccccchHHHHHHHHHhCCCCCceeeeeec-cCCCceecccccccccccCccCCCCCcc---cccHHHHHHc
Q 004119 442 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPC---LMTLAGLRRR 517 (773)
Q Consensus 442 gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr---~~tL~~lrrr 517 (773)
+.++++-|.|-..|-..-.-|...++...|.....+.| ..+|+||||+.++..| |=|+. ...+....++
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~nsaI-------~L~d~~tsp~~i~qki~~ 259 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGGSL-------WLDPQMTSPYAWYQYFVN 259 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSSCBC-------BSSTTTSCHHHHHHHHHT
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCCCeE-------EccCCCCCHHHHHHHHhc
Confidence 67888888888777766666677777665654445554 6789999999987222 32331 2344444443
Q ss_pred CCCHHHHHHHHHHh
Q 004119 518 GVTSTSINAFVQGI 531 (773)
Q Consensus 518 G~~PeAI~~fl~~l 531 (773)
.+-..+.+|+..+
T Consensus 260 -~~D~~v~~~l~l~ 272 (432)
T 2jan_A 260 -TADADVIRYLRWF 272 (432)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred -CCchhHHHHHHHH
Confidence 4444566666553
No 57
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=96.90 E-value=0.003 Score=70.88 Aligned_cols=98 Identities=23% Similarity=0.333 Sum_probs=59.8
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEEeecC-----C---cccchHHHHHHHH
Q 004119 237 KEVLDKHLEVTGGNVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDT-----N---PEAEKKEYIDHIE 306 (773)
Q Consensus 237 ~~~~~~h~~~~~g~v~tRFaPsPt-G~LHIGhaRaal-~n~~~Ar~~~G~~iLRidDT-----D---p~r~~~e~~~~I~ 306 (773)
.+.+.+.++. ++.++.=-.=.|| |.|||||.-.++ .+| +-+.++..+++-|.|- + ......++...+.
T Consensus 79 l~~ll~~l~~-g~p~~vytG~dPTagsLHLGH~v~~~~l~~-lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~ 156 (451)
T 3foc_A 79 FEEFLSYYEK-GHPIYIYTGRGPSSGALHLGHLLPFIFTKY-LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENI 156 (451)
T ss_dssp HHHHHHHHHT-TCCEEEEEEECCCSSCCBHHHHHHHHHHHH-HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCeEEEecCCCCCCCccHHHHHHHHHHHH-HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHH
Confidence 3344444443 3333322233678 889999999887 788 5555677788888773 1 1122345555666
Q ss_pred HHHHHcCCCCCC--cCCCchhHH--HHHHHHHHH
Q 004119 307 EIVQWMGWEPFK--ITYTSDYFQ--ELYELAVEL 336 (773)
Q Consensus 307 edL~wLGi~pd~--~~~qSd~~~--~~y~~a~~L 336 (773)
.++-.+|++|++ +..||+... .|++.+..|
T Consensus 157 ~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L 190 (451)
T 3foc_A 157 KDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLV 190 (451)
T ss_dssp HHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHH
T ss_pred HHHHHcCCCCCceEEEeCchhhcchhHHHHHHHH
Confidence 777777999875 667888753 344544433
No 58
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=96.86 E-value=0.0089 Score=66.34 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=48.6
Q ss_pred CCCCCC-cCchhHHHHH-HHHHHHHHHcCCEEEEEeecC-----Cc--ccchHHHHHHHHHHHHHcCCCCCC--cCCCch
Q 004119 256 PPEPNG-YLHIGHAKAM-FVDFGLAKERGGYCYLRYDDT-----NP--EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSD 324 (773)
Q Consensus 256 aPsPtG-~LHIGhaRaa-l~n~~~Ar~~~G~~iLRidDT-----Dp--~r~~~e~~~~I~edL~wLGi~pd~--~~~qSd 324 (773)
.=.||| .|||||.-.+ +.+| +-+.+|..+++-|-|. ++ ..+..++...+..++-.+|++|++ +..||+
T Consensus 107 G~~PTg~~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qs~ 185 (406)
T 3tze_A 107 GRGPSSKTMHIGHTIPFLLCKY-MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVE 185 (406)
T ss_dssp EECCCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHH
T ss_pred eeCCCCCcccHHHHHHHHHHHH-HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccH
Confidence 336788 8999999988 6788 5666677777777763 11 122345566677777788999875 456666
Q ss_pred hHH
Q 004119 325 YFQ 327 (773)
Q Consensus 325 ~~~ 327 (773)
...
T Consensus 186 ~~~ 188 (406)
T 3tze_A 186 ASH 188 (406)
T ss_dssp HGG
T ss_pred hHH
Confidence 544
No 59
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=96.76 E-value=0.008 Score=65.42 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=59.6
Q ss_pred HHHHHHhhhh-cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cc----ccchHHHHHHHH
Q 004119 237 KEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP----EAEKKEYIDHIE 306 (773)
Q Consensus 237 ~~~~~~h~~~-~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp----~r~~~e~~~~I~ 306 (773)
.+-|.+.|+. ..-.+.+=|-|| |.|||||.-.++.++..-...|..+++=|-|. || .....+....+.
T Consensus 28 ~~~L~~~L~~~~~~~vy~G~~PT--g~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~ 105 (348)
T 2j5b_A 28 LDRLKQLVDSGRIFTAYNGFEPS--GRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFI 105 (348)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCC--SSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEeccCCC--CCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHH
Confidence 5567777776 222455666554 89999995555667776666677777777662 33 123445666777
Q ss_pred HHHHHcCCCCCC--cCCCchhH
Q 004119 307 EIVQWMGWEPFK--ITYTSDYF 326 (773)
Q Consensus 307 edL~wLGi~pd~--~~~qSd~~ 326 (773)
.++-.+|++|++ +.+||+.+
T Consensus 106 ~~~la~Gldp~k~~i~~qs~~~ 127 (348)
T 2j5b_A 106 EVFKACGINLDGTRFIWASEFI 127 (348)
T ss_dssp HHHHHTTCCGGGEEEEEHHHHH
T ss_pred HHHHHhcCCccceEEEECCHhh
Confidence 777788999975 67888864
No 60
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=96.59 E-value=0.022 Score=62.59 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=52.9
Q ss_pred HHHHHHhhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHH--HHHHHHcCCEEEEEeecC-----Ccc-c---chHHHHHH
Q 004119 237 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVD--FGLAKERGGYCYLRYDDT-----NPE-A---EKKEYIDH 304 (773)
Q Consensus 237 ~~~~~~h~~~~-~g~v~tRFaPsPtG~LHIGhaRaal~n--~~~Ar~~~G~~iLRidDT-----Dp~-r---~~~e~~~~ 304 (773)
.+.|++.|+.. .-.+.+=|. |||.|||||. ++.+ +..-...|..+++=|-|. ||. + ........
T Consensus 44 ~~~L~~~L~~~~~~~iy~G~~--PTg~lHlG~g--vl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~ 119 (373)
T 3vgj_A 44 PDELRVKLLLKRKLICYDGFE--PSGRMHIAQG--LLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSY 119 (373)
T ss_dssp HHHHHHHHHHCSSCEEEEEEC--CCSSCBHHHH--HHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEeCCC--CCCCceehhh--HHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHH
Confidence 56677777652 234555665 5589999993 3333 222234566766666552 331 1 12344556
Q ss_pred HHHHHHHcCCCCCC--cCCCchhH
Q 004119 305 IEEIVQWMGWEPFK--ITYTSDYF 326 (773)
Q Consensus 305 I~edL~wLGi~pd~--~~~qSd~~ 326 (773)
+..++..+|++|++ +.+||+..
T Consensus 120 ~~~~~~a~G~dp~k~~i~~~S~~~ 143 (373)
T 3vgj_A 120 FIEVWKSCGMNMENVQFLWASEEI 143 (373)
T ss_dssp HHHHHHHTTCCSTTEEEEEHHHHH
T ss_pred HHHHHHHcCCChhheEEEeChhHH
Confidence 66778889999985 67899876
No 61
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=96.31 E-value=0.0055 Score=69.39 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=39.0
Q ss_pred CcceeecCcccccchHHHHHHHHHhCCCCCceeeeeec-cCCC--ceecccccc
Q 004119 442 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSN--TVMSKRKLN 492 (773)
Q Consensus 442 gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~L-n~~g--~kLSKRk~~ 492 (773)
+-++|.+|.|-..|-..-.-|...+|...|...+.++| .++| +||||+.++
T Consensus 303 ~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~n 356 (477)
T 1r6t_A 303 IQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 356 (477)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTT
T ss_pred CceeEeccccHHHHHHHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCC
Confidence 45778889888777766666778889878876555554 7788 899999876
No 62
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=96.16 E-value=0.036 Score=65.48 Aligned_cols=191 Identities=16% Similarity=0.162 Sum_probs=100.6
Q ss_pred cHHHHHHhhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-c---chHHHHHHH
Q 004119 236 TKEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-A---EKKEYIDHI 305 (773)
Q Consensus 236 ~~~~~~~h~~~~-~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-r---~~~e~~~~I 305 (773)
+.+.|++.|+.. .-.|.+=| .|||.|||||.-...+++..-...|..+++=|-|. ||. + ...+....+
T Consensus 27 ~~~eL~~~L~~~~~~~vy~G~--~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~ 104 (690)
T 3p0j_A 27 QESELRNLIEKKPLIRCYDGF--EPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYL 104 (690)
T ss_dssp CHHHHHHHHHHCTTEEEEEEE--CCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCceEEeee--cCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHH
Confidence 356677777542 22444555 56789999992211123333334566666666553 221 1 123344566
Q ss_pred HHHHHHcCCCCCC--cCCCchhHHH----HHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHHhHHHHHh
Q 004119 306 EEIVQWMGWEPFK--ITYTSDYFQE----LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDM 379 (773)
Q Consensus 306 ~edL~wLGi~pd~--~~~qSd~~~~----~y~~a~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~f~~m 379 (773)
..++..+|++|++ +.+||+++.. ++.....+ | +++|-.++... .+.
T Consensus 105 ~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i---~----~~~tv~~m~~~-----------~~~---------- 156 (690)
T 3p0j_A 105 IEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDI---G----RQNTIARIKKC-----------CTI---------- 156 (690)
T ss_dssp HHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHH---H----HTSCHHHHHTT-----------C------------
T ss_pred HHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHH---H----hhCCHHHHHhh-----------hhh----------
Confidence 7778889999975 6789986543 22322222 1 12333333211 000
Q ss_pred hcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCcccccchHHH
Q 004119 380 RNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASY 459 (773)
Q Consensus 380 ~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~gITHviRg~E~~~~~~~q 459 (773)
.| |.. .+ ++ .| --.||.-+=+ |-...+.+++..|.|-..+-..-
T Consensus 157 -~~---------r~~----------~~-----i~------~g--~f~YPlLQAa---Dil~~~ad~vpvG~DQ~~~l~l~ 200 (690)
T 3p0j_A 157 -MG---------KTE----------GT-----LT------AA--QVLYPLMQCC---DIFFLKADICQLGLDQRKVNMLA 200 (690)
T ss_dssp -------------------------CC-----CC------CS--CSSHHHHHHH---HHHHTTCSEECCBGGGHHHHHHH
T ss_pred -hh---------hcc----------CC-----Cc------hh--hHhhHHHHHH---HHHhhCCCEEeccccHHHHHHHH
Confidence 00 000 00 00 01 0124443333 33345788999998877666555
Q ss_pred HHHHHHhCCC-CCceeeeeec-cC-CCc-eecccccc
Q 004119 460 FWLLHALGLY-QPYVWEYSRL-NV-SNT-VMSKRKLN 492 (773)
Q Consensus 460 ~~L~~aLg~~-~P~~w~f~~L-n~-~g~-kLSKRk~~ 492 (773)
.-|...++.. .|...+.++| .+ +|+ ||||+.++
T Consensus 201 Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~ 237 (690)
T 3p0j_A 201 REYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPD 237 (690)
T ss_dssp HHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGG
T ss_pred HHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCC
Confidence 5566778764 5765555554 56 784 99999873
No 63
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=96.08 E-value=0.021 Score=64.00 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=48.6
Q ss_pred EEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEEeec-C----C--cccchHHHHHHHHHHHHHcCCCCCC--c
Q 004119 251 VLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDD-T----N--PEAEKKEYIDHIEEIVQWMGWEPFK--I 319 (773)
Q Consensus 251 v~tRFaPsPt-G~LHIGhaRaal-~n~~~Ar~~~G~~iLRidD-T----D--p~r~~~e~~~~I~edL~wLGi~pd~--~ 319 (773)
|.+=| -|| |.|||||.-.++ .+| +-+.+|...++=|-| | | ...+..++...+..++-.+|++|++ +
T Consensus 111 vy~G~--dPTag~LHLGh~v~~~~~~~-lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i 187 (437)
T 1r6u_A 111 LYTGR--GPSSEAMHVGHLIPFIFTKW-LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFI 187 (437)
T ss_dssp EEEEE--CCCSSCCBHHHHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEE
T ss_pred EEEcc--cCCCCCccHHHHHHHHHHHH-HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 44444 567 789999999987 565 444467766665655 2 1 2223455555667777778999875 6
Q ss_pred CCCchhHH
Q 004119 320 TYTSDYFQ 327 (773)
Q Consensus 320 ~~qSd~~~ 327 (773)
..||+...
T Consensus 188 ~~nSd~~~ 195 (437)
T 1r6u_A 188 FSDLDYMG 195 (437)
T ss_dssp EEHHHHGG
T ss_pred Eechhhhh
Confidence 78888764
No 64
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=96.03 E-value=0.18 Score=56.15 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=51.4
Q ss_pred CcceeecCcccccchHHHHHHHHHh-CCCCCceeeeeec-cCCCceecccccccccccCccCCCCCcc---cccHHHHHH
Q 004119 442 NITHSLCTLEFETRRASYFWLLHAL-GLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPC---LMTLAGLRR 516 (773)
Q Consensus 442 gITHviRg~E~~~~~~~q~~L~~aL-g~~~P~~w~f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr---~~tL~~lrr 516 (773)
+.++++-|.|-..|-..=.-|...+ +...|.....+.| ..+|+||||+.++. | |=|+. ...+....+
T Consensus 186 ~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~na-I-------~L~d~~tsp~~i~~ki~ 257 (420)
T 1jil_A 186 NCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGA-V-------WLDAEKTSPYEFYQFWI 257 (420)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSSB-C-------BSSTTTSCHHHHHHHHH
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCCCe-E-------ecCCCCCCHHHHHHHHh
Confidence 6778888888777766666667777 7666655555554 67899999999762 2 33332 234444444
Q ss_pred cCCCHHHHHHHHHHh
Q 004119 517 RGVTSTSINAFVQGI 531 (773)
Q Consensus 517 rG~~PeAI~~fl~~l 531 (773)
+ .+-..+.+|+..+
T Consensus 258 ~-~~D~~v~~~l~~~ 271 (420)
T 1jil_A 258 N-QSDEDVIKFLKYF 271 (420)
T ss_dssp T-CCHHHHHHHHHHH
T ss_pred c-CCchhHHHHHHHH
Confidence 3 4555566777654
No 65
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=96.02 E-value=0.01 Score=65.11 Aligned_cols=116 Identities=16% Similarity=0.247 Sum_probs=73.4
Q ss_pred cccCCCcceeecCcHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC----ccc--
Q 004119 223 IPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN----PEA-- 296 (773)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~h~~~~~g~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTD----p~r-- 296 (773)
++|+-++. ..+++..-+-.+=.|.|=+. |||.|||||.-.++.++ .....|..+++=|-|.. +..
T Consensus 51 i~f~hRd~------d~il~~~e~gk~~~v~sG~~--PTG~lHLGhyv~~~~~~-~lq~~~~~~~~~IaD~ha~t~~~~~~ 121 (372)
T 3a04_A 51 IIFGHRDF------DKILEAKARGERVAVLTGFM--PSGKFHFGHKLTVDQLI-YLQKNGFKVFVAIADAEAFAVRRIGR 121 (372)
T ss_dssp SEEEEESH------HHHHHHHHTTCCCEEEEEEC--CCSCCBHHHHHHHHHHH-HHHHTTCEEEEEECHHHHHHTTCCCH
T ss_pred eeeeccCH------HHHHHHHHcCCCCEEEeCcC--CCcHhHHHHHHHHHHHH-HHHhCCCeEEEEEecchhhccCCCCC
Confidence 56666665 56665543333445666665 57999999999765544 44456777777777642 211
Q ss_pred --chHHHHHHHHHHHHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHH
Q 004119 297 --EKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKE 354 (773)
Q Consensus 297 --~~~e~~~~I~edL~wLGi~pd~--~~~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~~ 354 (773)
........+..++-.+|++|++ +++||++...+++.+..| .|..+..+++.
T Consensus 122 ~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~~~~~~l~~~~-------~~~~~~~~~~~ 176 (372)
T 3a04_A 122 EEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRGTPYFRLIQLF-------SGKVTAAEMEA 176 (372)
T ss_dssp HHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSCHHHHHHHHHH-------TTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHcchhhhccchHHHHHHHHHH-------HhhhhHHHHhh
Confidence 1234445556677788999986 678999777777655443 35556665543
No 66
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=95.43 E-value=0.53 Score=52.40 Aligned_cols=82 Identities=7% Similarity=0.047 Sum_probs=50.2
Q ss_pred CcceeecCcccccchHHHHHHHHHh-CCCCCceeeeeec-cCCCceecccccccccccCccCCCCCcc---cccHHHHHH
Q 004119 442 NITHSLCTLEFETRRASYFWLLHAL-GLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPC---LMTLAGLRR 516 (773)
Q Consensus 442 gITHviRg~E~~~~~~~q~~L~~aL-g~~~P~~w~f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr---~~tL~~lrr 516 (773)
+.++++-|.|-..|-..=.-|...+ +...|.....+.| ..+|+||||+.++. | |=|+. ...+.....
T Consensus 185 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~na-I-------~L~d~~tsp~~i~qki~ 256 (419)
T 2ts1_A 185 GCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGT-I-------WLDKEKTSPYEFYQFWI 256 (419)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCC-C-------BSSTTTSCHHHHHHHHH
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCCCe-E-------ecCCCCCCHHHHHHHHh
Confidence 6777888888777666666667777 7655654555554 67899999998762 2 33332 234444444
Q ss_pred cCCCHHHHHHHHHHhC
Q 004119 517 RGVTSTSINAFVQGIG 532 (773)
Q Consensus 517 rG~~PeAI~~fl~~lG 532 (773)
+ .+-..+.+|+..+-
T Consensus 257 ~-~~D~~v~~~l~l~t 271 (419)
T 2ts1_A 257 N-TDDRDVIRYLKYFT 271 (419)
T ss_dssp T-CCHHHHHHHHHHHC
T ss_pred c-CCchhHHHHHHHHH
Confidence 3 55555667776543
No 67
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=95.37 E-value=0.13 Score=55.30 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=53.0
Q ss_pred cHHHHHHhhhhcCCeEEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-----c------ch
Q 004119 236 TKEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------EK 298 (773)
Q Consensus 236 ~~~~~~~h~~~~~g~v~tRFaPsPtG~-LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-----r------~~ 298 (773)
..+.+.+.++...-.|.+=| .|||. |||||.- ++.++..-...|..++.=|-|. ||. | +.
T Consensus 21 ~~~~l~~~l~~~~~~vy~G~--~PTg~slHlGh~l-~l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i 97 (322)
T 2yxn_A 21 DEEALAERLAQGPIALVCGF--DPTADSLHLGHLV-PLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETV 97 (322)
T ss_dssp SHHHHHHHHHHSCCEEEEEE--CCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHH
T ss_pred CHHHHHHHHcCCCCEEEEee--cCCCCcccHHHHH-HHHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHH
Confidence 35667777763333455555 46698 9999988 5677777776777777766652 232 1 22
Q ss_pred HHHHHHHHHHHHH---cCCCCCC--cCCCchhH
Q 004119 299 KEYIDHIEEIVQW---MGWEPFK--ITYTSDYF 326 (773)
Q Consensus 299 ~e~~~~I~edL~w---LGi~pd~--~~~qSd~~ 326 (773)
.+..+.|.+.+.. +|++|++ +..||+..
T Consensus 98 ~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~ 130 (322)
T 2yxn_A 98 QEWVDKIRKQVAPFLDFDCGENSAIAANNYDWF 130 (322)
T ss_dssp HHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEecchhh
Confidence 3344444444332 3777765 56777753
No 68
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.06 E-value=0.13 Score=56.16 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=48.9
Q ss_pred CcceeecCcccccchHHHHHHHHHhCCCCCceeeeeec-cCCCceecccccccccccCccCCCCCc---ccccHHHHHHc
Q 004119 442 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDP---CLMTLAGLRRR 517 (773)
Q Consensus 442 gITHviRg~E~~~~~~~q~~L~~aLg~~~P~~w~f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDP---r~~tL~~lrrr 517 (773)
+.++++.|.|-..+-..-.-|...++...|.....+.| ..+|+||||+.++. | |=++ -...+.....+
T Consensus 210 ~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~na-I-------~L~d~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 210 GCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNA-V-------WLNRDKTSPFELYQFFVR 281 (356)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------C-C-------BSSTTTSCHHHHHHHHHT
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCCCe-e-------eccCCCCCHHHHHHHHHc
Confidence 78899999988877776667778888766655555554 67899999998762 2 2122 11345554444
Q ss_pred CCCHHHHHHHHHHhCCCCCCccccHhHHHHHHHHhh
Q 004119 518 GVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 553 (773)
Q Consensus 518 G~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~~ 553 (773)
.+-..+.+|+..+-. .+.+.++++..++-
T Consensus 282 -~~D~~v~~~l~~~t~------~~~~~i~~l~~~~~ 310 (356)
T 2pid_A 282 -QPDDSVERYLKLFTF------LPLPEIDHIMQLHV 310 (356)
T ss_dssp -CCHHHHHHHHHHHCC------CCHHHHHHHHHHHH
T ss_pred -CCchhHHHHHHHHHc------CCchHHHHHHHHHh
Confidence 454556777765422 23345555555554
No 69
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=94.04 E-value=0.078 Score=64.97 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=47.4
Q ss_pred Ccee-eeeeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHH
Q 004119 471 PYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 548 (773)
Q Consensus 471 P~~w-~f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 548 (773)
|..| ++|++..+|+|||||+|| ..++..+.++ |.++++|.|++..+-...+..++.+.++..
T Consensus 635 pk~v~~~G~v~~~G~KMSKS~GN---------------vv~p~d~i~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~~ 697 (967)
T 1wz2_A 635 PKGIAVNGFGTLEGQKMSKSKGN---------------VLNFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGKL 697 (967)
T ss_dssp CCCEEEECCEEESSSCCCTTTCC---------------CCBHHHHHHT-TCHHHHHHHHHHHCCTTCCEEECHHHHHHH
T ss_pred cceEEEeeEEeeCCEEccccccC---------------CCCHHHHHHH-hChHHHHHHHHhCCCCCCCcccCHHHHHHH
Confidence 4444 468887899999999998 4688888886 999999999987665555556666665544
No 70
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=93.64 E-value=0.084 Score=58.23 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=59.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC----Ccc--cchHHHHHHHHHHHHHcCCCCCC--cCCC
Q 004119 251 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NPE--AEKKEYIDHIEEIVQWMGWEPFK--ITYT 322 (773)
Q Consensus 251 v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT----Dp~--r~~~e~~~~I~edL~wLGi~pd~--~~~q 322 (773)
|.+=| .|||.|||||.-.++.||..-.. +..+++=|-|. ++. ....+....+..++-.+|++|++ +++|
T Consensus 38 i~sG~--~PTG~lHLGhyvGal~~~~~LQ~-~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~q 114 (388)
T 3prh_A 38 IFSGI--QPSGSVTLGNYIGAMKQFVELQH-DYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQ 114 (388)
T ss_dssp EEEEE--CCCSCCBHHHHHHTHHHHHHTTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred EEEee--CCCCcchHHHHHHHHHHHHHHHc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEec
Confidence 44444 56799999999988888765443 66666666653 221 12344555667777789999986 7789
Q ss_pred chhHHHHHHHHHHHHHcCCcccCCCCHHHHH
Q 004119 323 SDYFQELYELAVELIRRGHAYVDHQTPEEIK 353 (773)
Q Consensus 323 Sd~~~~~y~~a~~LI~~G~AY~C~cs~eel~ 353 (773)
|+..+ +.+++-. +.|..+-.++.
T Consensus 115 S~v~~-~~el~w~-------l~~~~~~~~L~ 137 (388)
T 3prh_A 115 SEVPA-HAQAGWM-------MQCVAYIGELE 137 (388)
T ss_dssp GGSTH-HHHHHHH-------HHTTSCHHHHH
T ss_pred ccccc-hHHHHHH-------HHhhccHHHHH
Confidence 99753 4444322 24666666554
No 71
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=93.41 E-value=0.097 Score=62.82 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=47.7
Q ss_pred Ccee-eeeeccCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHH
Q 004119 471 PYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 548 (773)
Q Consensus 471 P~~w-~f~~Ln~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 548 (773)
|..| +++++..+|+|||||+|| ..++..+.++ |.++++|.|++..+--..+..++.+.++..
T Consensus 635 pk~v~~~G~v~~~G~KMSKS~GN---------------vv~p~dli~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~~ 697 (810)
T 1wkb_A 635 PKGIAVNGFGTLEGQKMSKSKGN---------------VLNFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGKL 697 (810)
T ss_dssp CCEEEEECCEEETTBCCCTTTTC---------------CCBHHHHHHH-HCHHHHHHHHHHHCCTTCCEEECHHHHHHH
T ss_pred ccEEEEEeEEEeCCeehhhcCCC---------------cCCHHHHHHH-cChHHHHHHHHhcCCCCCCcccCHHHHHHH
Confidence 5544 467888899999999998 4678888876 999999999986665555556777666554
No 72
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=92.53 E-value=0.2 Score=61.07 Aligned_cols=59 Identities=14% Similarity=0.046 Sum_probs=44.2
Q ss_pred ceeeeeecc-CCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHH
Q 004119 472 YVWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 547 (773)
Q Consensus 472 ~~w~f~~Ln-~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~ 547 (773)
.+|.||++. .+|.|||||+|| ..+...+.+. |.++++|.|+++ +-...+..++.+.++.
T Consensus 581 ~v~~hG~V~d~~G~KMSKSlGN---------------vV~P~dvi~~-yGaDalR~~lls-~~~~~D~~fs~~~l~~ 640 (917)
T 1ffy_A 581 FLLSHGFVMDGEGKKMSKSLGN---------------VIVPDQVVKQ-KGADIARLWVSS-TDYLADVRISDEILKQ 640 (917)
T ss_dssp EEEEECCEECTTSCCCCSSSSC---------------CCCHHHHHHH-TCHHHHHHHHHT-SCTTSCEECCHHHHHH
T ss_pred ceeEeeeEEcCCCcCcccccCC---------------cCChHHHHHh-CCHHHHHHHHhc-cCCCCCcccCHHHHHH
Confidence 367778876 499999999998 4678888875 999999999998 3333344567665554
No 73
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=92.10 E-value=0.14 Score=55.64 Aligned_cols=93 Identities=18% Similarity=0.115 Sum_probs=57.7
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC----Ccc--cchHHHHHHHHHHHHHcCCCCCC--cCC
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NPE--AEKKEYIDHIEEIVQWMGWEPFK--ITY 321 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT----Dp~--r~~~e~~~~I~edL~wLGi~pd~--~~~ 321 (773)
.|.+=|- |||.|||||.-.++-+|..-.. +..+++=|-|. ++. ....+....+..++-.+|++|++ +.+
T Consensus 8 ~v~sG~~--PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~ 84 (341)
T 3sz3_A 8 IVLSGVQ--PSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFV 84 (341)
T ss_dssp EEEEEEC--SSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEE
T ss_pred EEEeCcC--CCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEe
Confidence 4555554 6699999999988877743332 34555555553 221 23445666677778889999986 678
Q ss_pred CchhHHHHHHHHHHHHHcCCcccCCCCHHHHH
Q 004119 322 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 353 (773)
Q Consensus 322 qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~ 353 (773)
||+..+ ..+.+-. ..|.++.-++.
T Consensus 85 qS~v~~-~~el~~~-------l~~~~~~~~l~ 108 (341)
T 3sz3_A 85 QSHVPE-HAQLGWV-------LNCYTQMGELS 108 (341)
T ss_dssp GGGCTH-HHHHHHH-------HHTTSCHHHHH
T ss_pred ccchhh-hHHHHHH-------HHhhccHHHHH
Confidence 999753 3332222 24666666664
No 74
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=92.08 E-value=1.3 Score=49.94 Aligned_cols=139 Identities=19% Similarity=0.281 Sum_probs=98.0
Q ss_pred HHHHHHH-hcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh----------------ccCHHHHHHHH
Q 004119 11 EILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT----------------IKTPAQLEAAF 73 (773)
Q Consensus 11 ~~~~~f~-~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~----------------lks~~Ql~aA~ 73 (773)
+..+.|. ..||++.-|.-++.++.++.-+++++... . -++..++.|.+ --|+.+|..-+
T Consensus 305 ~~~~R~~~eygls~~dA~~L~~~~~~a~~fe~~~~~~-~---~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~li 380 (482)
T 3al0_B 305 EKAERFMREYGLPEYDAKVLTSSKELAEFFEECVKVV-N---RPKDLSNWIMTEVLRELNERNIEITESKLTPQHFADLF 380 (482)
T ss_dssp HHHHHHHHHHSCCHHHHHHHTSSHHHHHHHHHHHHHS-C---CHHHHHHHHHTHHHHHTTTTTCCTTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHhc-C---CHHHHHHHHHHHHHHHHHHcCCCHhhcCCCHHHHHHHH
Confidence 3455555 68999999999999988888888876642 1 13444444433 23678888888
Q ss_pred HHHHhcC-CC-------------CCCHHHHHHHcCCCeeeCHH-HHHHHHHHHHHhhHhHHHhhc--cccchhhhHHHHH
Q 004119 74 SFFASTG-SE-------------NFEVDEFEEACGVGVEVSSE-DIELTVNEVFEENKNTILELR--YRTNVGDLFAHVR 136 (773)
Q Consensus 74 ~yl~~~~-~~-------------~~d~~~fe~~cGVGv~vT~E-~I~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~~vr 136 (773)
+.+.+.. +. .-+.++.-++.|.. .+|.+ +|+++|+++|++|-+.+.+-| =...+|.+||+|.
T Consensus 381 ~li~~g~Is~~~ak~vl~~~~~~~~~p~~IIe~~gl~-qiSDe~el~~iV~evIa~np~~v~~~k~Gk~k~~G~lmGqVM 459 (482)
T 3al0_B 381 KLMDEGKISIKIAKEIFPEVFETGKMPSQIVEEKGLT-QINDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFVGYVM 459 (482)
T ss_dssp HHHTTTSSCTTHHHHSHHHHHHHCCCHHHHHHHHTCC-CCCCSSCHHHHHHHHHHTCHHHHHHHTTCCTTSTHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHHhcCCCHHHHHHHhCCc-cCCcHHHHHHHHHHHHHhChHHHHHHhcCCHHHHHHHHHHHH
Confidence 8776532 11 24566777777765 47877 999999999999988665522 2345899999997
Q ss_pred hhC-CCCChhhHHHHHHHH
Q 004119 137 KRL-PWADPKIVKQLIDAR 154 (773)
Q Consensus 137 ~~L-kWAd~k~vK~~vd~~ 154 (773)
+.. -=|||+.|.+.|.+.
T Consensus 460 k~tkGkADp~~V~~llke~ 478 (482)
T 3al0_B 460 RETKGKANPELTNRIIQKL 478 (482)
T ss_dssp HTTSSCSCHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHH
Confidence 763 359999888877654
No 75
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=91.61 E-value=2.9 Score=47.28 Aligned_cols=147 Identities=18% Similarity=0.215 Sum_probs=98.9
Q ss_pred hHHHHHH-HhcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh----------------ccCHHHHHHH
Q 004119 10 SEILELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT----------------IKTPAQLEAA 72 (773)
Q Consensus 10 ~~~~~~f-~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~----------------lks~~Ql~aA 72 (773)
++..+.| ...||++.-|.-++.++.++.-+++++.... -++..++.|.+ --|+.+|.+-
T Consensus 297 ~~k~~R~~~eygLs~~dA~~L~~~~~~a~~Fe~~v~~~~----~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~l 372 (483)
T 3ip4_B 297 DERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGA----DVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGM 372 (483)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHTSSHHHHHHHHHHHTTTC----CHHHHHHHHHTHHHHHHHHTTCCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHcCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHhhCCCCHHhcCCCHHHHHHH
Confidence 3444555 4689999999999998888777777764321 13444444433 1256777777
Q ss_pred HHHHHhcC-C-------------CCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHh--hccccchhhhHHHHH
Q 004119 73 FSFFASTG-S-------------ENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILE--LRYRTNVGDLFAHVR 136 (773)
Q Consensus 73 ~~yl~~~~-~-------------~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~--~ry~~n~g~ll~~vr 136 (773)
++.+.+.. + +.-+.++.-++-|...+=.+++|+++|+++|++|...+.+ .+=..-+|-|+|+|=
T Consensus 373 i~li~~g~Is~~~ak~vl~~~~~~~~~p~~iVee~GL~qisD~~eLe~iV~eVIa~np~~v~~~k~GK~ka~gfLVGQVM 452 (483)
T 3ip4_B 373 IKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIM 452 (483)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHCCCHHHHHHTTTCCCBCCHHHHHHHHHHHHHHCHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHHHHHHhcCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHCHHHHHHHHccCHHHHHHHHHHHH
Confidence 77665431 1 1245677777888776445558999999999999887653 223344788888884
Q ss_pred hh-CCCCChhhHHHHHHHHHHHhcC
Q 004119 137 KR-LPWADPKIVKQLIDARMYELLG 160 (773)
Q Consensus 137 ~~-LkWAd~k~vK~~vd~~~~~llg 160 (773)
+. =-=|||+.|.+.+.+.+.+-|.
T Consensus 453 K~tkGKAdP~~VnelL~e~L~~~~~ 477 (483)
T 3ip4_B 453 KASKGQANPQLVNQLLKQELDKRLE 477 (483)
T ss_dssp HHTTSCBCHHHHHHHHHHHHHHTCC
T ss_pred HHhCCCCCHHHHHHHHHHHHHhHHh
Confidence 44 3359999999999888766553
No 76
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=91.39 E-value=0.18 Score=61.10 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=47.7
Q ss_pred ceeeeeec-cCCCceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHH
Q 004119 472 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 548 (773)
Q Consensus 472 ~~w~f~~L-n~~g~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 548 (773)
.+|.|+++ ..+|+|||||+|| ..+...+.++ |.++|+|.|++..+-...+..++.+.++..
T Consensus 514 ~v~~hG~vld~~G~KMSKSlGN---------------vIdP~dli~~-yGaDalR~~ll~~~~~~~D~~fs~~~l~~~ 575 (862)
T 1gax_A 514 TVLLHGLVLDEKGQKMSKSKGN---------------VIDPLEMVER-YGADALRFALIYLATGGQDIRLDLRWLEMA 575 (862)
T ss_dssp EEEEECCEECTTSCBCCTTTTC---------------CCCHHHHHHH-HCHHHHHHHHHHHCCTTCCEECCHHHHHHH
T ss_pred EEEEeeeEEcCCCCCccccCCC---------------CCCHHHHHHH-cChHHHHHHHHhcCCCCCCCccCHHHHHHH
Confidence 46667765 5799999999998 3577788775 899999999998866566667777776653
No 77
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=91.08 E-value=0.17 Score=55.04 Aligned_cols=92 Identities=18% Similarity=0.125 Sum_probs=57.1
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-------CcccchHHHHHHHHHHHHHcCCCCCC--cC
Q 004119 250 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--IT 320 (773)
Q Consensus 250 ~v~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-------Dp~r~~~e~~~~I~edL~wLGi~pd~--~~ 320 (773)
.|.+=| .|||.|||||.-.++-+|..- +.+..+++=|-|. || ....+....+..++..+|++|++ ++
T Consensus 17 ~i~sG~--~PTG~lHLGh~vg~l~~~~~l-Q~~~~~~~~iaD~hA~t~~~~~-~~~~~~~~~~~~~~lA~GlDp~k~~if 92 (346)
T 3n9i_A 17 IVFSGA--QPSGELTIGNYMGALRQWVQM-QDDYDCIYCIVDLHAITARQDP-ALLRKRTLDTLALYLACGIDPKKSTIF 92 (346)
T ss_dssp EEEEEE--CSCSCCBHHHHHHTHHHHHTT-TTTSEEEEEECHHHHTTSCCCH-HHHHHHHHHHHHHHHHHTCCTTTSEEE
T ss_pred EEEECc--CCCCcccHHHHHHHHHHHHHH-HhhCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 355544 467999999999888777422 2345566655553 23 23345556677777889999986 67
Q ss_pred CCchhHHHHHHHHHHHHHcCCcccCCCCHHHHH
Q 004119 321 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 353 (773)
Q Consensus 321 ~qSd~~~~~y~~a~~LI~~G~AY~C~cs~eel~ 353 (773)
+||+..+ ..+.+-. +.|.++.-++.
T Consensus 93 ~qS~v~~-~~el~~~-------l~~~~~~~~l~ 117 (346)
T 3n9i_A 93 VQSHVPE-HSQLSWA-------LNCYTYFGELS 117 (346)
T ss_dssp EGGGCTH-HHHHHHH-------HHTTSBHHHHH
T ss_pred ecccccc-chHHHHH-------HHHHhhHHHHH
Confidence 8999754 3332211 34566655554
No 78
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1
Probab=89.08 E-value=0.51 Score=45.12 Aligned_cols=108 Identities=16% Similarity=0.219 Sum_probs=66.7
Q ss_pred HHHHHHHHcccccc---c-ccchhchhhhccCHHHHHHHH-HHHHhcCCCCCCHH-----HHHHHcCCCeeeCHHHHHHH
Q 004119 38 NLTAVIHEAAVTDG---C-ERRIGNLLYTIKTPAQLEAAF-SFFASTGSENFEVD-----EFEEACGVGVEVSSEDIELT 107 (773)
Q Consensus 38 ~L~~ii~~a~~~~~---~-~k~~g~LL~~lks~~Ql~aA~-~yl~~~~~~~~d~~-----~fe~~cGVGv~vT~E~I~~~ 107 (773)
.+...|+.+.++.. + |.....||-.+. -|-..++ .|+.. +..+.+.+ +.-+..|-. .+|.++|++.
T Consensus 28 ~l~aai~~~e~~~~~~~lt~~~l~~li~~~~--K~~ke~~~~~~~~-gr~dl~~~e~~e~~iie~~~~~-qlsd~el~~i 103 (148)
T 1ng6_A 28 MVKASLQNEAIKLKKDSLTEDEELTVLSREL--KQRKDSLQEFSNA-NRLDLVDKVQKELDILEVYLPE-QLSEEELRTI 103 (148)
T ss_dssp HHHHHHHHHHHHTTSSCCCHHHHHHHHHHHH--HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHGGGSCC-CCCHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHc-CCcccchhhhHHHHHHHHhCcc-cCCHHHHHHH
Confidence 34455555555322 2 333344444433 2333344 34443 22233455 677888854 6999999999
Q ss_pred HHHHHHhhHhHHHhhccccchhhhHHHHHhhCC-CCChhhHHHHHHHH
Q 004119 108 VNEVFEENKNTILELRYRTNVGDLFAHVRKRLP-WADPKIVKQLIDAR 154 (773)
Q Consensus 108 V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~Lk-WAd~k~vK~~vd~~ 154 (773)
|.++|+++.+ .+ ...+|.+||.|.+.++ =|||+.|...|.+.
T Consensus 104 V~evi~~~~~----~g-~k~~G~vmG~vmk~~~GkAD~~~v~~lvk~~ 146 (148)
T 1ng6_A 104 VNETIAEVGA----SS-KADMGKVMGAIMPKVKGKADGSLINKLVSSQ 146 (148)
T ss_dssp HHHHHHHTTC----CS-GGGHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHCcc----cC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999865 33 3458999998876533 39999988877654
No 79
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=87.90 E-value=1 Score=53.17 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=51.8
Q ss_pred EEeCCCCCCcCchhHHHHHHH--HHHHHHHcCCEEEEEeecC-----Cc----ccchHHHHHHHHHHHHHcCCCC-CCcC
Q 004119 253 TRFPPEPNGYLHIGHAKAMFV--DFGLAKERGGYCYLRYDDT-----NP----EAEKKEYIDHIEEIVQWMGWEP-FKIT 320 (773)
Q Consensus 253 tRFaPsPtG~LHIGhaRaal~--n~~~Ar~~~G~~iLRidDT-----Dp----~r~~~e~~~~I~edL~wLGi~p-d~~~ 320 (773)
+-|-| |||.||+||+-.++. +...--..|+..++=|-|- |+ .....++......++..||+++ -++.
T Consensus 385 ~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~k~~fv 463 (690)
T 3p0j_A 385 CMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIV 463 (690)
T ss_dssp EEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCTTSEEE
T ss_pred EEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCeEEE
Confidence 34888 999999999998765 3333334588888888776 23 1223455566677889999986 3477
Q ss_pred CCchhHH
Q 004119 321 YTSDYFQ 327 (773)
Q Consensus 321 ~qSd~~~ 327 (773)
++|+...
T Consensus 464 ~~S~~~~ 470 (690)
T 3p0j_A 464 TENEVIL 470 (690)
T ss_dssp EHHHHHH
T ss_pred ECCchhc
Confidence 8898654
No 80
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=87.65 E-value=0.78 Score=55.64 Aligned_cols=47 Identities=17% Similarity=0.033 Sum_probs=36.3
Q ss_pred eecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHH
Q 004119 485 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 547 (773)
Q Consensus 485 kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~ 547 (773)
|||||+|| ..+...+.++ |.+.++|.|++..+--..+..++.+.++.
T Consensus 639 KMSKSkGN---------------vVdP~diIek-YGADalRl~ll~~~~~~~dl~~s~~~ie~ 685 (880)
T 4arc_A 639 KMSKSKNN---------------GIDPQVMVER-YGADTVRLFMMFASPADMTLEWQESGVEG 685 (880)
T ss_dssp ECCTTTTC---------------CCCHHHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHHH
T ss_pred cccCcCCC---------------CCCHHHHHHH-cCchHHHHHHHhcCCCCCCcccCHHHHHH
Confidence 99999999 4688888887 99999999999986444444555555543
No 81
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=83.53 E-value=3.1 Score=46.90 Aligned_cols=141 Identities=17% Similarity=0.254 Sum_probs=52.3
Q ss_pred hHHHHHHH-hcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh----------------ccCHHHHHHH
Q 004119 10 SEILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT----------------IKTPAQLEAA 72 (773)
Q Consensus 10 ~~~~~~f~-~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~----------------lks~~Ql~aA 72 (773)
++..+.|. ..||++.-|.-++.++.++.-+++++.... -++..++.|.+ --|+.+|.+-
T Consensus 300 ~~~~~R~~~~ygLs~~dA~~L~~~~~~a~~fe~~~~~~~----~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~l 375 (478)
T 3h0l_B 300 DQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFK----EPKGIVNWLINDLLGLLRDKGISIEESPVKPEHLAEL 375 (478)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHSHHHHHHHHHHHHHSC----CHHHHHHHHHHTHHHHHHHHTCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHcCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHhCCCCHhhcCCCHHHHHHH
Confidence 34455554 689999999999999988888888876421 13444444433 1256777777
Q ss_pred HHHHHhcC-C-------------CCCCHHHHHHHcCCCeeeC-HHHHHHHHHHHHHhhHhHHHhh--ccccchhhhHHHH
Q 004119 73 FSFFASTG-S-------------ENFEVDEFEEACGVGVEVS-SEDIELTVNEVFEENKNTILEL--RYRTNVGDLFAHV 135 (773)
Q Consensus 73 ~~yl~~~~-~-------------~~~d~~~fe~~cGVGv~vT-~E~I~~~V~~~i~~~k~~l~~~--ry~~n~g~ll~~v 135 (773)
++.+.+.. + ..-+.++.-++.|... +| .++|+++|+++|++|...+.+- +=...+|.+||+|
T Consensus 376 i~li~~g~Is~~~ak~vl~~~~~~~~~p~eIVee~gL~q-isD~~el~~iV~evI~~np~~v~~~~~Gk~k~~g~lvGqV 454 (478)
T 3h0l_B 376 VKLIKEKVISTKIGKEVIKEMVETGKTPSQIVEEKGLKQ-ITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVGQV 454 (478)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHCC-------------------------------------------
T ss_pred HHHHHcCCccHHHHHHHHHHHHhcCCCHHHHHHHcCCcc-CCCHHHHHHHHHHHHHhChHHHHHHHccCHHHHHHHHHHH
Confidence 77665431 1 1235666777778765 55 5899999999999988765531 1223367777777
Q ss_pred HhhC-CCCChhhHHHHHHHHH
Q 004119 136 RKRL-PWADPKIVKQLIDARM 155 (773)
Q Consensus 136 r~~L-kWAd~k~vK~~vd~~~ 155 (773)
-+.. -=|||+.|.+.|.+.+
T Consensus 455 MK~tkGkAdp~~VnelL~e~L 475 (478)
T 3h0l_B 455 MRETRGKANPQVVNKVIRELV 475 (478)
T ss_dssp ---------------------
T ss_pred HHHhCCCCCHHHHHHHHHHHH
Confidence 4332 2589999888877654
No 82
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=82.73 E-value=1.9 Score=52.36 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=38.6
Q ss_pred ceecccccccccccCccCCCCCcccccHHHHHHcCCCHHHHHHHHHHhCCCCCCccccHhHHHHH
Q 004119 484 TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 548 (773)
Q Consensus 484 ~kLSKRk~~~lv~~~~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 548 (773)
.|||||+|| ..+...+.++ |.+.++|.|++..+-...+..++.+.++..
T Consensus 636 ~KMSKSkGN---------------vVdP~diI~~-yGADalRl~ll~~~~~~~D~~fs~~~v~~~ 684 (878)
T 2v0c_A 636 AVMSKSKGN---------------GVMVGPFVKE-QGADIARITILFAAPPENEMVWTEEGVQGA 684 (878)
T ss_dssp EECSGGGTC---------------CCBHHHHHHH-SCHHHHHHHHHHHSCTTSCEEECHHHHHHH
T ss_pred HHhhccCCC---------------cccHHHHHHH-cCccHHHHHHhccCCCCCCceeCHHHHHHH
Confidence 899999998 4678888877 999999999998766556656666665543
No 83
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=79.83 E-value=1.3 Score=51.64 Aligned_cols=143 Identities=17% Similarity=0.307 Sum_probs=27.2
Q ss_pred hHHHHHHH-hcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh----cc--------CHHHHHHHHHHH
Q 004119 10 SEILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT----IK--------TPAQLEAAFSFF 76 (773)
Q Consensus 10 ~~~~~~f~-~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~----lk--------s~~Ql~aA~~yl 76 (773)
++..+.|. ..|||+.-|.-++.++.+ .-+.+++.. +. -++...+.|-. |+ |+.+|.+-++.+
T Consensus 460 ~~k~~r~~~~ygls~~~A~~l~~~~~~-d~FE~~v~~-~~---~pK~aanWL~~el~~L~~~i~~~~lt~e~la~LI~li 534 (633)
T 1zq1_C 460 QAKVERYVKEYKLDRSLAQTLVDDERD-ELFEELVSM-GV---KPSLAASILVVVLKGLRKEVPIENVTDEHIREAFQLY 534 (633)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHTSTH-HHHHHHHHT-TC---STTHHHHHHHHTTCC----------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhchHH-HHHHHHHHh-cC---CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 34455555 689999999999988774 555555443 21 12333222222 11 123333333333
Q ss_pred --------------HhcC-CCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCC-
Q 004119 77 --------------ASTG-SENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLP- 140 (773)
Q Consensus 77 --------------~~~~-~~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~Lk- 140 (773)
.... ....+.++.-++.|.. .+|.++|+++|.++|++|.+.+.+ +=...+|.+||+|.+.++
T Consensus 535 ~~gkIs~~sAkevl~~~~~~~~~~~~eIIee~gl~-QlSDeELe~iV~eVIaeNp~~V~~-gk~K~mG~lmGqVMK~tkG 612 (633)
T 1zq1_C 535 LEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLT-LLSEEEVTRIIEEVIQQNIEVVKA-KGMGAMGLIMGRVMAKVRG 612 (633)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HcCcccHHHHHHHHHHHhccCCCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHHHhh-cCHhHHHHHHHHHHHHhCC
Confidence 2111 0123445566666753 478999999999999998775554 223358888888876543
Q ss_pred CCChhhHHHHHHHHHHHhc
Q 004119 141 WADPKIVKQLIDARMYELL 159 (773)
Q Consensus 141 WAd~k~vK~~vd~~~~~ll 159 (773)
=|||+.|.+.|.+.+...+
T Consensus 613 KADpk~VnelLke~L~~~~ 631 (633)
T 1zq1_C 613 KADGKLVSQIVRRKLQEIS 631 (633)
T ss_dssp -------------------
T ss_pred CCCHHHHHHHHHHHHhhhh
Confidence 5999999888877765433
No 84
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=76.49 E-value=0.7 Score=53.66 Aligned_cols=70 Identities=23% Similarity=0.374 Sum_probs=0.0
Q ss_pred CCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCC-CCChhhHHHHHHHHH
Q 004119 84 FEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLP-WADPKIVKQLIDARM 155 (773)
Q Consensus 84 ~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~Lk-WAd~k~vK~~vd~~~ 155 (773)
-+..+.-++.|.. .+|.++|+++|.++|++|.+.+.+ +=...+|.+||+|.+..+ =|||+.|.+.|.+.+
T Consensus 545 ~~~~eIIee~gl~-QlSDeELe~iV~eVIaeNp~~V~~-gk~K~mG~lmGqVMK~tkGKADpk~VnelLke~L 615 (619)
T 2d6f_C 545 LAAEDAARKLNLL-LLAEDEIESIIQEIVEGNLDMISE-RGMGAMGPLMGQAMGRLRGRADGKVVNRILREKI 615 (619)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHHHhh-cCHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3556666777754 478999999999999998775554 223358888888876544 589998888877654
No 85
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=66.05 E-value=19 Score=39.60 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=34.9
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEEeec
Q 004119 237 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDD 291 (773)
Q Consensus 237 ~~~~~~h~~~~~g~v~tRFaPsPtG~-LHIGhaRaal~n~~~Ar~~~G~~iLRidD 291 (773)
.+.|++.++...-.+.+=|- |||. |||||.- ++.++..-...|..++.=|-|
T Consensus 53 ~e~l~~ll~~~~~~vy~G~d--PTg~sLHlGhlv-~l~~l~~lQ~~G~~~~~lIgD 105 (392)
T 1y42_X 53 KEHIAELMRTRRIGAYVGID--PTAPSLHVGHLL-PLMPLFWMYLEGYKAFTLIGG 105 (392)
T ss_dssp HHHHHHHHHHCCCEEEEEEC--CCSSSCBGGGHH-HHHHHHHHHHHTCEEEEEECT
T ss_pred HHHHHHHHcCCCCEEEEeec--CCCCCccHHHHH-HHHHHHHHHHcCCcEEEEEcC
Confidence 56777777544445555554 5698 9999998 567776666666666665554
No 86
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=60.88 E-value=15 Score=34.07 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=39.3
Q ss_pred ccCHHHHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHH
Q 004119 63 IKTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNE 110 (773)
Q Consensus 63 lks~~Ql~aA~~yl~~~~~~~~d~~~fe~~c-GVGv~vT~E~I~~~V~~ 110 (773)
..+...|..|++.+-..+++.|+.++|...+ .+|..+|+++|.+.++.
T Consensus 81 ~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~~~ 129 (153)
T 3i5g_B 81 TDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKD 129 (153)
T ss_dssp CCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHHTT
T ss_pred cccHHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHHHH
Confidence 4567889999999877777889999998876 46889999999877654
No 87
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=56.63 E-value=2.3 Score=51.17 Aligned_cols=133 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccccccccchhchhhh-----c------cCHHHHHHHHHHHHhcC-C--
Q 004119 16 FLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT-----I------KTPAQLEAAFSFFASTG-S-- 81 (773)
Q Consensus 16 f~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~-----l------ks~~Ql~aA~~yl~~~~-~-- 81 (773)
+...|||+.-|.-++.++.++.-++++.. +. -++..++.|.+ | -|+.+|.+-++.|.+.. +
T Consensus 688 ~~eyGLs~~dA~vL~~~~~ladyFE~v~~--~~---~pk~aANWl~~eL~~~Ln~~~~~itp~~LaeLi~LI~~g~IS~k 762 (851)
T 2hz7_A 688 LLGLGASEGDARTIARDPALLAFVGGAAP--GD---TFAQVASWTVNELVAGLRAGEVKVRAADLAPLAEGVASGQLSAR 762 (851)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHcCCCHHHHHHHHCCHHHHHHHHHHHh--cC---CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCccHH
Confidence 57899999999999988888777777642 11 13444444333 2 13456666665554321 1
Q ss_pred -----------CCCCHHHHHHHcCCCeeeCHH-HHHHHHHHHHHhhHhHHHhhc--cccchhhhHHHHHhh-CCCCChhh
Q 004119 82 -----------ENFEVDEFEEACGVGVEVSSE-DIELTVNEVFEENKNTILELR--YRTNVGDLFAHVRKR-LPWADPKI 146 (773)
Q Consensus 82 -----------~~~d~~~fe~~cGVGv~vT~E-~I~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~~vr~~-LkWAd~k~ 146 (773)
..-+.++.-++.|... ||.+ +|+++|.++|++|...+.+-| =..-+|-|+|+|=+. ===|||+.
T Consensus 763 ~AK~Vl~~m~~~~~~p~eIVee~GL~q-ISD~~eLe~iV~eVIa~Np~~Ve~yr~GK~ka~gfLVGQVMK~tkGKAnP~~ 841 (851)
T 2hz7_A 763 IAREALARAAASGDAPLTIIEREGLNA-GLSAEALQQVVAQVIAANPDKAEAYRGGKTALLGFFTGQVMRATAGKADPQA 841 (851)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHcCCCc-CCCHHHHHHHHHHHHHHCHHHHHHHHcccHhHHHHHHHHHHHHhCCCCCHHH
Confidence 1234566777778765 6655 899999999999988765511 122356666665332 22488888
Q ss_pred HHHHHHHH
Q 004119 147 VKQLIDAR 154 (773)
Q Consensus 147 vK~~vd~~ 154 (773)
|.+.+.+.
T Consensus 842 VnelL~ek 849 (851)
T 2hz7_A 842 LAAALKDA 849 (851)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 87776644
No 88
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=56.04 E-value=32 Score=32.46 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 004119 65 TPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 111 (773)
Q Consensus 65 s~~Ql~aA~~yl~~~~~~~~d~~~fe~~c-GVGv~vT~E~I~~~V~~~ 111 (773)
+..++.+|++.+-...++.|+.++|...+ -.|..+|+++|.+.++.+
T Consensus 82 ~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~ 129 (176)
T 2lhi_A 82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV 129 (176)
T ss_dssp HHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhh
Confidence 45679999999977777889999999876 468889999999988765
No 89
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=50.40 E-value=41 Score=31.27 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=59.0
Q ss_pred ChhHHHHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccc-cc-cccch-hchhhhc--cCHHHHHHHHHHHHhcCCC
Q 004119 8 DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVT-DG-CERRI-GNLLYTI--KTPAQLEAAFSFFASTGSE 82 (773)
Q Consensus 8 ~~~~~~~~f~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~-~~-~~k~~-g~LL~~l--ks~~Ql~aA~~yl~~~~~~ 82 (773)
+.+|+...+..+|+++. .+..++...... ++ ++..- -.++..+ .+...+..|++.+-.+..+
T Consensus 57 ~~~El~~~l~~~g~~~~-------------~~~~~~~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~F~~~D~d~~G 123 (180)
T 3mse_B 57 SHREIYTVLASVGIKKW-------------DINRILQALDINDRGNITYTEFMAGCYRWKNIESTFLKAAFNKIDKDEDG 123 (180)
T ss_dssp EHHHHHHHHHHTTCCHH-------------HHHHHHHHHCTTCCSEECHHHHHHHHSCCTTC--CHHHHHHHHHCTTCSS
T ss_pred CHHHHHHHHHHcCCCHH-------------HHHHHHHHhCCCCCCcCcHHHHHHHHHhcccCCHHHHHHHHHHHCCCCCC
Confidence 45677788888887632 244555555442 11 11111 1111111 1236789999988776667
Q ss_pred CCCHHHHHHHcCCCeeeCHHHHHHHHHHHHH
Q 004119 83 NFEVDEFEEACGVGVEVSSEDIELTVNEVFE 113 (773)
Q Consensus 83 ~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~ 113 (773)
.|+.++|...+. |..+|++++.+.+..+=.
T Consensus 124 ~I~~~El~~~l~-~~~~~~~~~~~~~~~~d~ 153 (180)
T 3mse_B 124 YISKSDIVSLVH-DKVLDNNDIDNFFLSVHS 153 (180)
T ss_dssp CBCHHHHHHHTT-TSSCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHc-CCCCCHHHHHHHHHHhhh
Confidence 899999999999 899999999988776543
No 90
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=47.55 E-value=26 Score=29.28 Aligned_cols=41 Identities=15% Similarity=0.349 Sum_probs=35.0
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHH
Q 004119 64 KTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEV 111 (773)
Q Consensus 64 ks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~ 111 (773)
.+..||.+|++-+ +.+++-|+.+++.. .+|+|||...|+.+
T Consensus 7 ~~~eel~eAFr~f-~dg~G~It~~eLr~------~lt~eevd~~i~~~ 47 (75)
T 1h8b_A 7 DTAEQVIASFRIL-ASDKPYILAEELRR------ELPPDQAQYCIKRM 47 (75)
T ss_dssp STHHHHHHHHHHH-TTSCSSBCHHHHHH------HSCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHH-hcCCCCcCHHHHHh------cCCHHHHHHHHHhc
Confidence 4678999999988 66667899999999 59999999988873
No 91
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=41.44 E-value=57 Score=29.27 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=39.1
Q ss_pred ccCHHHHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 004119 63 IKTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 111 (773)
Q Consensus 63 lks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cG-VGv~vT~E~I~~~V~~~ 111 (773)
..+...+..|++.+-...++.|+.++|...+. .|..+|.++|.+.++.+
T Consensus 79 ~~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 128 (148)
T 2lmt_A 79 TDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREA 128 (148)
T ss_dssp TTTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHHh
Confidence 44567899999999877778899999988754 46788999998877654
No 92
>2p12_A Hypothetical protein DUF402; APC7392, beta-barrel, rhodococcus SP. RHA1, structural genom 2, protein structure initiative; 1.63A {Rhodococcus SP} SCOP: b.175.1.1
Probab=38.57 E-value=40 Score=33.08 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=39.6
Q ss_pred CCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhh---CCCCC
Q 004119 84 FEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKR---LPWAD 143 (773)
Q Consensus 84 ~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~---LkWAd 143 (773)
+|.+||++++.-|. ||+|+.+.+++..-.- .+.|.+.+|. +++=|... |-|++
T Consensus 120 lDeDEL~~A~~~Gl-Is~e~ae~Alr~a~~~-v~~i~~~g~d-----l~~Wl~~~g~~l~w~~ 175 (176)
T 2p12_A 120 LDVDELMEAHTTGL-LDTATAEQAILTATTA-IDGIAAHGHD-----LGRWLASIGMPIDWRG 175 (176)
T ss_dssp ECHHHHHHHHHTTS-SCHHHHHHHHHHHHHH-HHHHHHTTTC-----HHHHHHHTTCCCCCCC
T ss_pred ecHHHHHHHHHcCC-CCHHHHHHHHHHHHHH-HHHHHHccCC-----HHHHHHhCCCcceeCC
Confidence 79999999999998 9999999998877655 3335554544 45555543 88985
No 93
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=38.21 E-value=15 Score=31.94 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 004119 67 AQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 111 (773)
Q Consensus 67 ~Ql~aA~~yl~~~~~~~~d~~~fe~~cG-VGv~vT~E~I~~~V~~~ 111 (773)
.++..|++.+-.+.++.|+.++|...+. .|..+|.+||++.++.+
T Consensus 36 ~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~ 81 (100)
T 2lv7_A 36 EEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRL 81 (100)
T ss_dssp HHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4577888888766677899999887764 46888999988877654
No 94
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=37.78 E-value=1.7e+02 Score=31.27 Aligned_cols=138 Identities=12% Similarity=0.104 Sum_probs=79.4
Q ss_pred ChhHHHHHHHhcCCChhhHHHHh-hCHH-HHHHHHHHHHHcccccccccchhchhhh-----ccCHHHHHHHHHHHHhcC
Q 004119 8 DKSEILELFLKIGLDDRTAKNTI-ANNK-VTANLTAVIHEAAVTDGCERRIGNLLYT-----IKTPAQLEAAFSFFASTG 80 (773)
Q Consensus 8 ~~~~~~~~f~~iGL~e~kake~~-kN~k-l~~~L~~ii~~a~~~~~~~k~~g~LL~~-----lks~~Ql~aA~~yl~~~~ 80 (773)
+++..+..|..+|++...+..++ +||. +..+|..+|+....-+--+...+.+|.. .-|..+|...+.|+++.+
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lG 124 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLG 124 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcC
Confidence 34566788999999999988876 4555 3556666665543311124556666665 456678999999998765
Q ss_pred CCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhh--CCCCChhhHHHHHHHH
Q 004119 81 SENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKR--LPWADPKIVKQLIDAR 154 (773)
Q Consensus 81 ~~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~--LkWAd~k~vK~~vd~~ 154 (773)
-..-+...+-..|--=+..+.+.|...|.-+ ..++.|+...+..-+++. +=-.+...++.-++=.
T Consensus 125 l~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L---------~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efL 191 (335)
T 4fp9_B 125 LGEGKLKRVLYCCPEIFTMRQQDINDTVRLL---------KEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYA 191 (335)
T ss_dssp CTTTTHHHHHHHCGGGGTSCHHHHHHHHHHH---------HHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCchhhccChHHHHHHHHHH---------HHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHH
Confidence 3333444455555444455666665555432 233444445555555543 2222344555555533
No 95
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=37.74 E-value=80 Score=27.94 Aligned_cols=47 Identities=17% Similarity=0.407 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 004119 65 TPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 111 (773)
Q Consensus 65 s~~Ql~aA~~yl~~~~~~~~d~~~fe~~c-GVGv~vT~E~I~~~V~~~ 111 (773)
+..++..|++.+-.+..+.|+.++|...+ .+|..+|++++.+.+..+
T Consensus 81 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 128 (148)
T 1exr_A 81 SEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREA 128 (148)
T ss_dssp HHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 34567888888876666789999998764 356789999998887764
No 96
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=37.18 E-value=68 Score=29.59 Aligned_cols=74 Identities=12% Similarity=0.167 Sum_probs=51.2
Q ss_pred CCCChhHHHHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccc--cccccch--hch---hhhccCHHHHHHHHHHHH
Q 004119 5 SKGDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVT--DGCERRI--GNL---LYTIKTPAQLEAAFSFFA 77 (773)
Q Consensus 5 ~~~~~~~~~~~f~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~--~~~~k~~--g~L---L~~lks~~Ql~aA~~yl~ 77 (773)
...+.+.+.+.+..+||+..+....+.++.+.+.+..-...+... +|-|.=. |-. .....|..++...|+||.
T Consensus 102 ~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiINGky~v~~~~~~s~e~~~~~i~~Ll 181 (184)
T 4dvc_A 102 PPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVVNNRYLVQGQSAKSLDEYFDLVNYLL 181 (184)
T ss_dssp CCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEETTTEEECGGGCSSHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEECCEEeeCCcCCCCHHHHHHHHHHHH
Confidence 345667888999999999999999999999988887766555431 2222110 211 122677788888888886
Q ss_pred h
Q 004119 78 S 78 (773)
Q Consensus 78 ~ 78 (773)
+
T Consensus 182 ~ 182 (184)
T 4dvc_A 182 T 182 (184)
T ss_dssp T
T ss_pred h
Confidence 4
No 97
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=36.08 E-value=54 Score=36.57 Aligned_cols=93 Identities=17% Similarity=0.330 Sum_probs=55.8
Q ss_pred ChhHHHHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccc-cc-cccch-hchhhh----ccCHHHHHHHHHHHHhcC
Q 004119 8 DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVT-DG-CERRI-GNLLYT----IKTPAQLEAAFSFFASTG 80 (773)
Q Consensus 8 ~~~~~~~~f~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~-~~-~~k~~-g~LL~~----lks~~Ql~aA~~yl~~~~ 80 (773)
+.+|+...|.++|+.-.. ..+..++...... ++ ++-.- -.++.. ..+..+|..|++.+-...
T Consensus 320 S~eELk~aLrsLG~~~Te-----------eEI~~Lf~~~D~DgDG~IdFeEFl~lms~~lk~~d~eeeLreAFk~fDkDg 388 (440)
T 3u0k_A 320 TTKELGTVMRSLGQNPTE-----------AELQDMINEVDADGDGTIDFPEFLIMMARKMKDTDSEEEIREAFRVFDKDG 388 (440)
T ss_dssp CHHHHHHHHHHTTCCCCH-----------HHHHHHHHHHCSSCSSSEEHHHHHHHHHTC------CHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHcCCCCCH-----------HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCChHHHHHHHHHHHCCCC
Confidence 456777778888775332 1244555555542 11 11111 011111 445678999999887666
Q ss_pred CCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 004119 81 SENFEVDEFEEACG-VGVEVSSEDIELTVNEV 111 (773)
Q Consensus 81 ~~~~d~~~fe~~cG-VGv~vT~E~I~~~V~~~ 111 (773)
++.|+.++|.+.+- +|..+|++||.+.++.+
T Consensus 389 dG~IS~eELr~vL~~lGe~LSdeEIdeLfke~ 420 (440)
T 3u0k_A 389 NGYISAAELRHVMTNLGEKLTDEEVDEMIREA 420 (440)
T ss_dssp SSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 67899999987653 46788999998877654
No 98
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=33.18 E-value=64 Score=29.06 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=37.4
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 004119 64 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 111 (773)
Q Consensus 64 ks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cG-VGv~vT~E~I~~~V~~~ 111 (773)
.+...+..|++.+-....+.|+.++|...+. +|..+|++++...+..+
T Consensus 92 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 140 (166)
T 2mys_B 92 DPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAF 140 (166)
T ss_pred CcHHHHHHHHHHhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Confidence 4567888999888766667899999988863 46778999988877654
No 99
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=32.31 E-value=50 Score=30.47 Aligned_cols=48 Identities=29% Similarity=0.374 Sum_probs=41.1
Q ss_pred ccCHHHHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHH
Q 004119 63 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEV 111 (773)
Q Consensus 63 lks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~ 111 (773)
..+...+..+++.+-.+..+.++.++|...+. |..+|++++...+..+
T Consensus 119 ~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~-~~~~~~~~~~~~~~~~ 166 (191)
T 3khe_A 119 LLSRERLLAAFQQFDSDGSGKITNEELGRLFG-VTEVDDETWHQVLQEC 166 (191)
T ss_dssp HCCHHHHHHHHHHHCTTCSSEECHHHHHHHTT-SSCCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCcCcCCHHHHHHHHc-cCCCCHHHHHHHHHHh
Confidence 45667899999988766667899999999999 9999999998887765
No 100
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=31.35 E-value=73 Score=27.64 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 004119 65 TPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 111 (773)
Q Consensus 65 s~~Ql~aA~~yl~~~~~~~~d~~~fe~~cG-VGv~vT~E~I~~~V~~~ 111 (773)
+...+..|++.+-.+..+.++.++|.+.+. +|..+|++++...+..+
T Consensus 82 ~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (147)
T 4ds7_A 82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV 129 (147)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 346678888877665567899999988764 56789999999888766
No 101
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=31.14 E-value=58 Score=30.98 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=39.0
Q ss_pred ccCHHHHHHHHHHHHhcCCCCCCHHHHHHHcCC---CeeeCHHHHHHHHHHH
Q 004119 63 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGV---GVEVSSEDIELTVNEV 111 (773)
Q Consensus 63 lks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cGV---Gv~vT~E~I~~~V~~~ 111 (773)
..+...+..|++.+-...++.|+.++|.+.++- |..+|++++.+.+..+
T Consensus 125 ~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~l~~~~ 176 (197)
T 3pm8_A 125 YLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEV 176 (197)
T ss_dssp HCSHHHHHHHHHHHCTTCSSEECHHHHHHHHC----CCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCCHHHHHHHHHHH
Confidence 556778999999887766678999999998864 6678888888777665
No 102
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=29.78 E-value=83 Score=27.94 Aligned_cols=48 Identities=13% Similarity=0.411 Sum_probs=36.1
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 004119 64 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 111 (773)
Q Consensus 64 ks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cG-VGv~vT~E~I~~~V~~~ 111 (773)
.+...+..|++.+-....+.|+.++|...+. +|..+|++++...+..+
T Consensus 84 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 132 (156)
T 1wdc_B 84 DSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEA 132 (156)
T ss_dssp CCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHCcCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhc
Confidence 3567888888877666667899999987753 56778999988776643
No 103
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=28.98 E-value=55 Score=27.44 Aligned_cols=49 Identities=14% Similarity=0.346 Sum_probs=37.0
Q ss_pred ccCHHHHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 004119 63 IKTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 111 (773)
Q Consensus 63 lks~~Ql~aA~~yl~~~~~~~~d~~~fe~~c-GVGv~vT~E~I~~~V~~~ 111 (773)
-.+..++..+++.+-.+..+.|+.++|...+ .+|..+|.+++.+.++.+
T Consensus 25 ~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 74 (94)
T 2kz2_A 25 TDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 74 (94)
T ss_dssp CSCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 4566788889888876666789999988765 346778999988776654
No 104
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=28.74 E-value=67 Score=26.95 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=38.0
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCHHHHHHHcCC----CeeeCHHHHHHHHHHH
Q 004119 64 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV----GVEVSSEDIELTVNEV 111 (773)
Q Consensus 64 ks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cGV----Gv~vT~E~I~~~V~~~ 111 (773)
.+..++..|++.+-.+..+.|+.++|...+.. |..+|++++...+..+
T Consensus 38 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (108)
T 2pvb_A 38 KSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADG 89 (108)
T ss_dssp SCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Confidence 34677889999887666678999999988743 7789999988877654
No 105
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=28.49 E-value=91 Score=29.99 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=49.0
Q ss_pred CChhHHHHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccc--cccccc--hhchhh---hccCH------HHHHHHH
Q 004119 7 GDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVT--DGCERR--IGNLLY---TIKTP------AQLEAAF 73 (773)
Q Consensus 7 ~~~~~~~~~f~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~--~~~~k~--~g~LL~---~lks~------~Ql~aA~ 73 (773)
.+.+.+.+++..+||+..+..+.+.++.+.+.+..-...+... .|.|.= -|..+. .+.+. .++-+-+
T Consensus 105 ~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gtPtfvvnG~~~v~~~~~~~~~~~~~~~~~~~~i 184 (191)
T 3l9s_A 105 QSAADIRKVFVDAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQLQGVPAMFVNGKYQINPQGMDTSSMDVFVQQYADTV 184 (191)
T ss_dssp SSHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECGGGSCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHhCCcccCEEEECCEEEECccccCCccchhhHHHHHHHH
Confidence 4678899999999999999999999999888887766554431 222211 122111 15554 4788888
Q ss_pred HHHHh
Q 004119 74 SFFAS 78 (773)
Q Consensus 74 ~yl~~ 78 (773)
+||.+
T Consensus 185 ~~L~~ 189 (191)
T 3l9s_A 185 KYLVD 189 (191)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 88865
No 106
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=27.63 E-value=67 Score=34.06 Aligned_cols=80 Identities=15% Similarity=0.264 Sum_probs=53.1
Q ss_pred hHHHHHHHhcCCChhhHHHH-----hhCHHHHHHHHHHHHHcccccccccchhchhhh-----ccCHHHHHHHHHHHHhc
Q 004119 10 SEILELFLKIGLDDRTAKNT-----IANNKVTANLTAVIHEAAVTDGCERRIGNLLYT-----IKTPAQLEAAFSFFAST 79 (773)
Q Consensus 10 ~~~~~~f~~iGL~e~kake~-----~kN~kl~~~L~~ii~~a~~~~~~~k~~g~LL~~-----lks~~Ql~aA~~yl~~~ 79 (773)
++.++.|.+.||+..+|... ++++.-..++.+++...|.+ +...+.++.. ..+..++...+.|+.+.
T Consensus 20 ~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s---~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~l 96 (343)
T 3mva_O 20 EDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGAS---KEVIASIISRYPRAITRTPENLSKRWDLWRKI 96 (343)
T ss_dssp CCHHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCC---HHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCC---HHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHc
Confidence 45688999999999988654 23332234555666666663 3444555544 35577899999998753
Q ss_pred CCCCCCHHHHHHHcCCCeeeCHHHHHHHHHH
Q 004119 80 GSENFEVDEFEEACGVGVEVSSEDIELTVNE 110 (773)
Q Consensus 80 ~~~~~d~~~fe~~cGVGv~vT~E~I~~~V~~ 110 (773)
| +|++||..+|..
T Consensus 97 ----------------G--~s~~~i~~il~~ 109 (343)
T 3mva_O 97 ----------------V--TSDLEIVNILER 109 (343)
T ss_dssp ----------------S--SCHHHHHHHHHH
T ss_pred ----------------C--CCHHHHHHHHHH
Confidence 3 588888877664
No 107
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=26.60 E-value=76 Score=26.61 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=38.2
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCHHHHHHHcCC----CeeeCHHHHHHHHHHH
Q 004119 64 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV----GVEVSSEDIELTVNEV 111 (773)
Q Consensus 64 ks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cGV----Gv~vT~E~I~~~V~~~ 111 (773)
....++..+++.+-.+..+.|+.++|...+.- |..+|.+++...+..+
T Consensus 39 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (110)
T 1pva_A 39 MSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAA 90 (110)
T ss_dssp SCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Confidence 35678889999887666678999999988653 7889999988877754
No 108
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=26.38 E-value=61 Score=26.44 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=34.7
Q ss_pred HHHHHHHHHHH-hcCCC-CCCHHHHHHHcC------CCeeeCHHHHHHHHHHH
Q 004119 67 AQLEAAFSFFA-STGSE-NFEVDEFEEACG------VGVEVSSEDIELTVNEV 111 (773)
Q Consensus 67 ~Ql~aA~~yl~-~~~~~-~~d~~~fe~~cG------VGv~vT~E~I~~~V~~~ 111 (773)
.++..+++.+- .+..+ .|+.++|...+. +|..+|++++.+.+..+
T Consensus 9 ~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~ 61 (93)
T 1k2h_A 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKEL 61 (93)
T ss_dssp HHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 45777888776 46667 899999988765 67888999988877655
No 109
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=26.06 E-value=1.4e+02 Score=26.84 Aligned_cols=96 Identities=15% Similarity=0.139 Sum_probs=56.9
Q ss_pred ChhHHHHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccc-cc-cccchhchhhhccCHHHHHHHHHHHHhcCCCCCC
Q 004119 8 DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVT-DG-CERRIGNLLYTIKTPAQLEAAFSFFASTGSENFE 85 (773)
Q Consensus 8 ~~~~~~~~f~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~-~~-~~k~~g~LL~~lks~~Ql~aA~~yl~~~~~~~~d 85 (773)
+.+|+...+..+|+.... .+-....+..++...... ++ ++-.- .+..+....++..+++.+-.+..+.++
T Consensus 17 ~~~el~~~l~~lg~~~~~------~~~~~~~~~~l~~~~D~~~~g~i~~~e--F~~~~~~~~~~~~~F~~~D~d~~G~i~ 88 (165)
T 1k94_A 17 DAEELQRCLTQSGINGTY------SPFSLETCRIMIAMLDRDHTGKMGFNA--FKELWAALNAWKENFMTVDQDGSGTVE 88 (165)
T ss_dssp CHHHHHHHHHHHTTTTTS------CCCCHHHHHHHHHHHCTTCSSCBCHHH--HHHHHHHHHHHHHHHHHHCTTCCSBCC
T ss_pred CHHHHHHHHHHhccccCC------CCCCHHHHHHHHHHhCCCCCCcCCHHH--HHHHHHHHHHHHHHHHHhCCCCCceEC
Confidence 567788888888873200 000012234445555442 11 11110 011123346788888888766667899
Q ss_pred HHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 004119 86 VDEFEEAC-GVGVEVSSEDIELTVNEV 111 (773)
Q Consensus 86 ~~~fe~~c-GVGv~vT~E~I~~~V~~~ 111 (773)
.++|...+ .+|..+|++++.+.+..+
T Consensus 89 ~~el~~~l~~~g~~~~~~~~~~~~~~~ 115 (165)
T 1k94_A 89 HHELRQAIGLMGYRLSPQTLTTIVKRY 115 (165)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 99997765 356779999999999887
No 110
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=25.57 E-value=79 Score=26.53 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=38.2
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCHHHHHHHcCC----CeeeCHHHHHHHHHHH
Q 004119 64 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV----GVEVSSEDIELTVNEV 111 (773)
Q Consensus 64 ks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cGV----Gv~vT~E~I~~~V~~~ 111 (773)
.+..++..|++.+-.+..+.|+.++|...+.. |..+|++++...+..+
T Consensus 39 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (109)
T 3fs7_A 39 KTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAG 90 (109)
T ss_dssp CCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHh
Confidence 45678899999887776788999999987642 7889999988777654
No 111
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=25.54 E-value=1.1e+02 Score=29.02 Aligned_cols=73 Identities=10% Similarity=0.094 Sum_probs=50.2
Q ss_pred CChhHHHHHHHhc-CCChhhHHHHhhCHHHHHHHHHHHHHcccc--cccccc--hhchhhh---ccCH------HHHHHH
Q 004119 7 GDKSEILELFLKI-GLDDRTAKNTIANNKVTANLTAVIHEAAVT--DGCERR--IGNLLYT---IKTP------AQLEAA 72 (773)
Q Consensus 7 ~~~~~~~~~f~~i-GL~e~kake~~kN~kl~~~L~~ii~~a~~~--~~~~k~--~g~LL~~---lks~------~Ql~aA 72 (773)
.+.+.+.+++..+ ||+..+..+.+.++.+...+..-...+... .|.|.= .|..+.. +.+. .++-..
T Consensus 98 ~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~GtPt~~vng~~~v~~~~~~~~~~~~~~~~~~~~ 177 (189)
T 3l9v_A 98 HSPDDVRRVFMSATGISRGEYDRSIKSPAVNDMVALQERLFKEYGVRGTPSVYVRGRYHINNAAFGAFSVENFRSRYAAV 177 (189)
T ss_dssp CSHHHHHHHHHHHHCCCHHHHHHHTTSHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECGGGCCCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccCCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCccCEEEECCEEEECccccccccccchHHHHHHH
Confidence 5678889999999 999999999999999888887666554331 222211 1222211 5665 788888
Q ss_pred HHHHHhc
Q 004119 73 FSFFAST 79 (773)
Q Consensus 73 ~~yl~~~ 79 (773)
++||.+.
T Consensus 178 i~~Li~k 184 (189)
T 3l9v_A 178 VRKLLAG 184 (189)
T ss_dssp HHHHHCC
T ss_pred HHHHHhC
Confidence 9998753
No 112
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=25.26 E-value=1.1e+02 Score=27.02 Aligned_cols=48 Identities=13% Similarity=0.387 Sum_probs=36.1
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 004119 64 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 111 (773)
Q Consensus 64 ks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cG-VGv~vT~E~I~~~V~~~ 111 (773)
.+...+..|++.+-.+..+.++.++|...+. .|..+|++++...+..+
T Consensus 93 ~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 141 (161)
T 3fwb_A 93 DPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEF 141 (161)
T ss_dssp CHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3356788888888666667899999988763 56788999988776544
No 113
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=24.51 E-value=1.5e+02 Score=25.24 Aligned_cols=43 Identities=9% Similarity=0.241 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCC-CCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHH
Q 004119 67 AQLEAAFSFFASTGS-ENFEVDEFEEACGVGVEVSSEDIELTVNEVFE 113 (773)
Q Consensus 67 ~Ql~aA~~yl~~~~~-~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i~ 113 (773)
..|..+++|+..+.. .+++.+++-+.+| +|+..+....++...
T Consensus 3 ~~i~~~~~~i~~~~~~~~~~~~~lA~~~~----~S~~~l~r~fk~~~G 46 (107)
T 2k9s_A 3 NRVREACQYISDHLADSNFDIASVAQHVC----LSPSRLSHLFRQQLG 46 (107)
T ss_dssp HHHHHHHHHHHHTSSCSSCCHHHHHHHTT----SCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHC----CCHHHHHHHHHHHHC
Confidence 578899999999986 7899999999999 678888777776654
No 114
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=24.25 E-value=58 Score=30.92 Aligned_cols=50 Identities=22% Similarity=0.396 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHcC--CCeeeCHHHHHHHHHHHHHh
Q 004119 65 TPAQLEAAFSFFASTGSENFEVDEFEEACG--VGVEVSSEDIELTVNEVFEE 114 (773)
Q Consensus 65 s~~Ql~aA~~yl~~~~~~~~d~~~fe~~cG--VGv~vT~E~I~~~V~~~i~~ 114 (773)
....+..|++.+-....+.|+.++|...+. +|..+|++++.+.|..++..
T Consensus 111 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~s~~~~~~l~~~~~~~ 162 (208)
T 2ct9_A 111 RSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQE 162 (208)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 346678888877766667899999999886 47889999999988777755
No 115
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=24.25 E-value=54 Score=30.39 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=38.4
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 004119 64 KTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 111 (773)
Q Consensus 64 ks~~Ql~aA~~yl~~~~~~~~d~~~fe~~c-GVGv~vT~E~I~~~V~~~ 111 (773)
.+..+|..|++.+-...++.|+.++|...+ -+|..+|++||.+.++.+
T Consensus 82 ~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~ 130 (159)
T 3i5g_C 82 TAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFC 130 (159)
T ss_dssp CCHHHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 345779999999977777889999998775 357889999998877654
No 116
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=22.96 E-value=1.1e+02 Score=33.56 Aligned_cols=51 Identities=14% Similarity=0.015 Sum_probs=30.1
Q ss_pred CcceeecCcccccchHHHHHHHHHh-----------------CCCCCceeeeeec-cCCCceecccccc
Q 004119 442 NITHSLCTLEFETRRASYFWLLHAL-----------------GLYQPYVWEYSRL-NVSNTVMSKRKLN 492 (773)
Q Consensus 442 gITHviRg~E~~~~~~~q~~L~~aL-----------------g~~~P~~w~f~~L-n~~g~kLSKRk~~ 492 (773)
+.++++-|.|-..|-..=.-|.+.+ ++..|.....++| ..+|+||||+.++
T Consensus 232 ~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~n 300 (392)
T 1y42_X 232 GVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGN 300 (392)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSS
T ss_pred CccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCC
Confidence 5777777777655544333333322 2234444444554 6799999999876
No 117
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=22.62 E-value=1.7e+02 Score=27.91 Aligned_cols=40 Identities=5% Similarity=0.035 Sum_probs=31.4
Q ss_pred CChhHHHHHHHhc-CCChhhHHHHhhCHHHHHHHHHHHHHc
Q 004119 7 GDKSEILELFLKI-GLDDRTAKNTIANNKVTANLTAVIHEA 46 (773)
Q Consensus 7 ~~~~~~~~~f~~i-GL~e~kake~~kN~kl~~~L~~ii~~a 46 (773)
.+.+.+.+++..+ ||+..+..+.+.++.+...+..-...+
T Consensus 107 ~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a 147 (193)
T 3hz8_A 107 QNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELT 147 (193)
T ss_dssp TSHHHHHHHHHHCTTTTHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccCCCHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 4677788888888 999998888888888877776655544
No 118
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=22.48 E-value=1.2e+02 Score=29.20 Aligned_cols=76 Identities=11% Similarity=0.032 Sum_probs=50.1
Q ss_pred CCCCCChhHHHHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccc--cccccc----hhch---hhhccCHHHHHHHH
Q 004119 3 GVSKGDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVT--DGCERR----IGNL---LYTIKTPAQLEAAF 73 (773)
Q Consensus 3 ~~~~~~~~~~~~~f~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~--~~~~k~----~g~L---L~~lks~~Ql~aA~ 73 (773)
|..-++.+.+.++...+||+..+..+.+.++.+.+.+..-...+... .|.|.= .|.. +....+..++.+++
T Consensus 119 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~g~Pt~~v~~~~~~~~~~~g~~~~e~~~~~i 198 (208)
T 3kzq_A 119 AMPPHEEATHLQLAKEIGLNVQQFKNDMDGTLLEGVFQDQLSLAKSLGVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLI 198 (208)
T ss_dssp CCCTTCHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEEEETTEEEEECCCSSCSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCcccEEEEEECCEEEEeeCCCCCHHHHHHHH
Confidence 34456788899999999999999999999999888887776655431 222211 1111 11145566677777
Q ss_pred HHHHh
Q 004119 74 SFFAS 78 (773)
Q Consensus 74 ~yl~~ 78 (773)
+++.+
T Consensus 199 ~~~~~ 203 (208)
T 3kzq_A 199 RERII 203 (208)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76654
No 119
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=21.65 E-value=79 Score=26.46 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=37.2
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCHHHHHHHcCC----CeeeCHHHHHHHHHHH
Q 004119 64 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV----GVEVSSEDIELTVNEV 111 (773)
Q Consensus 64 ks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cGV----Gv~vT~E~I~~~V~~~ 111 (773)
....++..+++.+-.+..+.|+.++|...+.. |..+|.+++...++.+
T Consensus 38 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (108)
T 1rro_A 38 MSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAA 89 (108)
T ss_dssp SCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHh
Confidence 34677888998887666678999999887643 7889999988877654
No 120
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=21.34 E-value=82 Score=27.45 Aligned_cols=46 Identities=30% Similarity=0.487 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHcC--CCeeeCHHHHHHHHHHH
Q 004119 66 PAQLEAAFSFFASTGSENFEVDEFEEACG--VGVEVSSEDIELTVNEV 111 (773)
Q Consensus 66 ~~Ql~aA~~yl~~~~~~~~d~~~fe~~cG--VGv~vT~E~I~~~V~~~ 111 (773)
...+..|++.+-.+..+.++.++|...+. .|..+|++++...+..+
T Consensus 87 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 134 (153)
T 3ox6_A 87 VKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDV 134 (153)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 46788888888666667899999998865 57889999998887765
No 121
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=21.19 E-value=61 Score=24.31 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 004119 68 QLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 111 (773)
Q Consensus 68 Ql~aA~~yl~~~~~~~~d~~~fe~~cG-VGv~vT~E~I~~~V~~~ 111 (773)
++..+++.+-.+..+.++.++|...+. +|..+|++++...+..+
T Consensus 2 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 46 (67)
T 1tiz_A 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEI 46 (67)
T ss_dssp THHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 355666666555556678777776652 45667777777666544
No 122
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=20.37 E-value=2.4e+02 Score=23.94 Aligned_cols=42 Identities=10% Similarity=0.145 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHH
Q 004119 67 AQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVF 112 (773)
Q Consensus 67 ~Ql~aA~~yl~~~~~~~~d~~~fe~~cGVGv~vT~E~I~~~V~~~i 112 (773)
..|..++.|+..+...+++.+++-+.+| +|+..+....++..
T Consensus 2 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~----~s~~~l~r~fk~~~ 43 (108)
T 3mn2_A 2 NAVRQVEEYIEANWMRPITIEKLTALTG----ISSRGIFKAFQRSR 43 (108)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHT----CCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccCCCCHHHHHHHHC----CCHHHHHHHHHHHh
Confidence 4688999999999877899999999999 57777777776653
No 123
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=20.36 E-value=68 Score=26.94 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=37.4
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCHHHHHHHcC----CCeeeCHHHHHHHHHHH
Q 004119 64 KTPAQLEAAFSFFASTGSENFEVDEFEEACG----VGVEVSSEDIELTVNEV 111 (773)
Q Consensus 64 ks~~Ql~aA~~yl~~~~~~~~d~~~fe~~cG----VGv~vT~E~I~~~V~~~ 111 (773)
.+..++..|++.+-.+..+.++.++|...+. .|..+|.+++...+..+
T Consensus 38 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 5pal_A 38 KTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAG 89 (109)
T ss_dssp CCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 4567889999988776667899999887653 27889999988877654
No 124
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=20.34 E-value=89 Score=25.36 Aligned_cols=44 Identities=23% Similarity=0.518 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 004119 68 QLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 111 (773)
Q Consensus 68 Ql~aA~~yl~~~~~~~~d~~~fe~~cG-VGv~vT~E~I~~~V~~~ 111 (773)
++..+++.+-.++.+.|+.++|...+. +|+.+|.+++...+..+
T Consensus 21 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~ 65 (90)
T 1avs_A 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEV 65 (90)
T ss_dssp HHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 455666655555556688887776642 46677888887766544
No 125
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=20.19 E-value=1.8e+02 Score=27.28 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=48.3
Q ss_pred CChhHHHHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccc--cccccc--hhchhhh---ccCH-HHHHHHHHHHHh
Q 004119 7 GDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVT--DGCERR--IGNLLYT---IKTP-AQLEAAFSFFAS 78 (773)
Q Consensus 7 ~~~~~~~~~f~~iGL~e~kake~~kN~kl~~~L~~ii~~a~~~--~~~~k~--~g~LL~~---lks~-~Ql~aA~~yl~~ 78 (773)
.+.+.+.+++..+||+..+..+.+.++.+.+.+..-...+... .+.|.= -|..+.. ..+. .++...++||.+
T Consensus 105 ~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gtPt~ving~~~~~g~~~~~~~e~~~~~i~~L~~ 184 (195)
T 3hd5_A 105 FDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQRASQLAEAAHIDGTPAFAVGGRYMTSPVLAGNDYAGALKVVDQLIV 184 (195)
T ss_dssp CSHHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECTTTTTGGGTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCceEEECCEEEeCccccCChHHHHHHHHHHHHH
Confidence 5778888999999999999999999998888887766555431 222211 0222222 3344 677788888765
Q ss_pred c
Q 004119 79 T 79 (773)
Q Consensus 79 ~ 79 (773)
.
T Consensus 185 ~ 185 (195)
T 3hd5_A 185 Q 185 (195)
T ss_dssp H
T ss_pred H
Confidence 3
No 126
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=20.18 E-value=1.1e+02 Score=27.07 Aligned_cols=46 Identities=13% Similarity=0.389 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 004119 66 PAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 111 (773)
Q Consensus 66 ~~Ql~aA~~yl~~~~~~~~d~~~fe~~cG-VGv~vT~E~I~~~V~~~ 111 (773)
...+..|++.+-....+.|+.++|...+. +|..+|++++.+.++.+
T Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 124 (143)
T 2obh_A 78 KEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEA 124 (143)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 45688888877666667899999988763 56779999999887654
Done!