BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004120
(773 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F9I|A Chain A, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
pdb|2F9I|C Chain C, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
Length = 327
Score = 253 bits (645), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 136/318 (42%), Positives = 178/318 (55%)
Query: 92 PKPVTLDFEKPLVGLSKKIMDVRKMANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQR 151
P+ LDFEKPL + KI +++ + +D ++I LE ++ K +YT+L P R
Sbjct: 10 PRGSMLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDR 69
Query: 152 VNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRN 211
V IAR RPT LD++ I + F+ELHGDR DDPA++ GIG ++GR +G Q+G++
Sbjct: 70 VQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKD 129
Query: 212 TKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAH 271
TK+NI RNFGM P GYRKALR+M A+ PI TFIDT GAY +EE GQ E+IA
Sbjct: 130 TKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIAT 189
Query: 272 NLRTMFGLKVPXXXXXXXXXXXXXXXXXXCANKLLMLENAVFYVASPEACAAILWXXXXX 331
NL M LKVP ANK+LMLEN+ + V SPE AA+LW
Sbjct: 190 NLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNL 249
Query: 332 XXXXXXXXXITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQ 391
IT ++ +L I D VI EPLGGAH D + IK A +D L +
Sbjct: 250 AKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFVAQLDSLESLSRD 309
Query: 392 ELLKHRNLKFRKIGGFQE 409
E+ R KFR IG + E
Sbjct: 310 EIANDRFEKFRNIGSYIE 327
>pdb|2F9Y|A Chain A, The Crystal Structure Of The Carboxyltransferase Subunit
Of Acc From Escherichia Coli
Length = 339
Score = 228 bits (582), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 170/312 (54%), Gaps = 3/312 (0%)
Query: 97 LDFEKPLVGLSKKIMDVRKMA-NDTGLDFS--DQIVSLENKYQQALKDLYTHLTPIQRVN 153
LDFE+P+ L KI + + D LD + +++ L K + + ++ L Q
Sbjct: 26 LDFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQ 85
Query: 154 IARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTK 213
+ARHP RP LD+V ++F EL GDRA DD AIV GI +DGR M +GHQKGR TK
Sbjct: 86 LARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGRETK 145
Query: 214 ENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNL 273
E I+RNFGMP P GYRKALR+M A+ PI+TFIDTPGAY + +EE GQ EAIA NL
Sbjct: 146 EKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPGVGAEERGQSEAIARNL 205
Query: 274 RTMFGLKVPXXXXXXXXXXXXXXXXXXCANKLLMLENAVFYVASPEACAAILWXXXXXXX 333
R M L VP +K+ ML+ + + V SPE CA+ILW
Sbjct: 206 REMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKAP 265
Query: 334 XXXXXXXITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393
I L +L++ D +IPEPLGGAH +P + +K + + +L + T++L
Sbjct: 266 LAAEAMGIIRPRLKELKLIDSIIPEPLGGAHRNPEAMAASLKAQLLADLADLDVLSTEDL 325
Query: 394 LKHRNLKFRKIG 405
R + G
Sbjct: 326 KNRRYQRLMSYG 337
>pdb|1VRG|A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|B Chain B, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|C Chain C, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|D Chain D, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|E Chain E, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|F Chain F, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
Length = 527
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 230 KALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMF 277
KA R + + D PI+TF+DTPG + E G I H + ++
Sbjct: 353 KAARFIRFLDAFNIPILTFVDTPGYLPGVAQE---HGGIIRHGAKLLY 397
>pdb|2A7S|A Chain A, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|B Chain B, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|C Chain C, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|D Chain D, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|E Chain E, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|F Chain F, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
Length = 548
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 158 PNRPTFLDHVFN--ITEKFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKEN 215
PN+P + V + ++F+E+ +AGY IV G G +DGR + +Q
Sbjct: 308 PNQPYDMHEVITRLLDDEFLEI---QAGYAQ-NIVVGFGRIDGRPVGIVANQPTHFA--- 360
Query: 216 IQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 253
G + KA R + D PIV +D PG
Sbjct: 361 -----GCLDINASEKAARFVRTCDCFNIPIVMLVDVPG 393
>pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|B Chain B, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|C Chain C, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|D Chain D, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|E Chain E, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|F Chain F, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
Length = 548
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 158 PNRPTFLDHVFN--ITEKFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKEN 215
PN+P + V + ++F+E+ +AGY IV G G +DGR + +Q
Sbjct: 308 PNQPYDMHEVITRLLDDEFLEI---QAGYAQ-NIVVGFGRIDGRPVGIVANQPTHFA--- 360
Query: 216 IQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 253
G + KA R + D PIV +D PG
Sbjct: 361 -----GCLDINASEKAARFVRTCDCFNIPIVMLVDVPG 393
>pdb|3FCS|A Chain A, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|C Chain C, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 959
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 180 DRAGYDDPAIVTGIGSMDGR--TYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYY 237
DR GY+D A+ G GR +F+G +G ++ + + PT + +LR
Sbjct: 367 DRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAFGFSLRGAVD 426
Query: 238 ADHHGFP 244
D +G+P
Sbjct: 427 IDDNGYP 433
>pdb|1F5V|A Chain A, Structure And Site-Directed Mutagenesis Of A Flavoprotein
From Escherichia Coli That Reduces Nitrocompounds.
Alteration Of Pyridine Nucleotide Binding By A Single
Amino Acid Substitution
pdb|1F5V|B Chain B, Structure And Site-Directed Mutagenesis Of A Flavoprotein
From Escherichia Coli That Reduces Nitrocompounds.
Alteration Of Pyridine Nucleotide Binding By A Single
Amino Acid Substitution
Length = 240
Score = 33.1 bits (74), Expect = 0.65, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 34 ALGRARFGSKSRGFAVSAKLRKVKKHDYP-------WPKDPKDVDPNVKGGVLTHLSHFK 86
LG G KL K+ +H P WP D D+ P + +L H + ++
Sbjct: 123 GLGGVYIGGLRNNIEAVTKLLKLPQHVLPLFGLCLGWPADNPDLKPRLPASILVHENSYQ 182
Query: 87 PLKE 90
PL +
Sbjct: 183 PLDK 186
>pdb|1K9X|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|B Chain B, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|C Chain C, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|D Chain D, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1KA2|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Mg
pdb|1KA4|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Nat-Pb
Length = 499
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 110 IMDVRKMANDTGLDFSDQIVSLENKYQQALKDLYT----HLTPIQ-RVNIARHPNRPTFL 164
I DVR G DF I+S +++ AL +L TPI V++ H ++ F
Sbjct: 246 IRDVRITTRYEGYDFRRTILSTVHEFGHALYELQQDERFMFTPIAGGVSLGIHESQSRFW 305
Query: 165 DHVFNITEKFVEL 177
+++ +++FVEL
Sbjct: 306 ENIIGRSKEFVEL 318
>pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNV|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNY|A Chain A, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XNY|B Chain B, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XO6|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
Length = 530
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 187 PAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIV 246
P I+TG G ++GR + +Q + G KA R + D P++
Sbjct: 320 PNILTGFGRVEGRPVGIVANQP--------MQFAGCLDITASEKAARFVRTCDAFNVPVL 371
Query: 247 TFIDTPGAYADLKSEELG 264
TF+D PG + E G
Sbjct: 372 TFVDVPGFLPGVDQEHDG 389
>pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|F Chain F, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|A Chain A, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|B Chain B, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|D Chain D, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|E Chain E, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
Length = 530
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 187 PAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIV 246
P I+TG G ++GR + +Q + G KA R + D P++
Sbjct: 320 PNILTGFGRVEGRPVGIVANQP--------MQFAGCLDITASEKAARFVRTCDAFNVPVL 371
Query: 247 TFIDTPGAYADLKSEELG 264
TF+D PG + E G
Sbjct: 372 TFVDVPGFLPGVDQEHDG 389
>pdb|1XNW|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
Length = 530
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 187 PAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIV 246
P I+TG G ++GR + +Q + G KA R + D P++
Sbjct: 320 PNILTGFGRVEGRPVGIVANQP--------MQFAGCLDITASEKAARFVRTCDAFNVPVL 371
Query: 247 TFIDTPGAYADLKSEELG 264
TF+D PG + E G
Sbjct: 372 TFVDVPGFLPGVDQEHDG 389
>pdb|3IAV|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422v
pdb|3IAV|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422v
Length = 530
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 187 PAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIV 246
P I+TG G ++GR + +Q + G KA R + D P++
Sbjct: 320 PNILTGFGRVEGRPVGIVANQP--------MQFAGCLDITASEKAARFVRTCDAFNVPVL 371
Query: 247 TFIDTPGAYADLKSEELG 264
TF+D PG + E G
Sbjct: 372 TFVDVPGFLPGVDQEHDG 389
>pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l
pdb|3IB9|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422l
Length = 530
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 187 PAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIV 246
P I+TG G ++GR + +Q + G KA R + D P++
Sbjct: 320 PNILTGFGRVEGRPVGIVANQP--------MQFAGCLDITASEKAARFVRTCDAFNVPVL 371
Query: 247 TFIDTPGAYADLKSEELG 264
TF+D PG + E G
Sbjct: 372 TFVDVPGFLPGVDQEHDG 389
>pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|C Chain C, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|D Chain D, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|E Chain E, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|F Chain F, Propionyl-Coa Carboxylase Beta Subunit, D422a
Length = 530
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 187 PAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIV 246
P I+TG G ++GR + +Q + G KA R + D P++
Sbjct: 320 PNILTGFGRVEGRPVGIVANQP--------MQFAGCLDITASEKAARFVRTCDAFNVPVL 371
Query: 247 TFIDTPGAYADLKSEELG 264
TF+D PG + E G
Sbjct: 372 TFVDVPGFLPGVDQEHDG 389
>pdb|2BDV|A Chain A, X-ray Crystal Structure Of Phage-related Protein Bb2244
From Bordetella Bronchiseptica. Northeast Structural
Genomics Consortium Target Bor24
Length = 231
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 33 KALGRARFGSKSRG---FAVSAKLRKVKKHDYPW 63
+AL R +G K G F ++AKL +++H +PW
Sbjct: 53 EALARLPWGYKPHGSSFFXINAKLETIERHGWPW 86
>pdb|3FCU|A Chain A, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|C Chain C, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|E Chain E, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3NID|A Chain A, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NID|C Chain C, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NIF|A Chain A, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIF|C Chain C, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|A Chain A, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|C Chain C, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3T3M|A Chain A, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3M|C Chain C, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|A Chain A, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|C Chain C, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
Length = 457
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 180 DRAGYDDPAIVTGIGSMDGR--TYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYY 237
DR GY+D A+ G GR +F+G +G ++ + + PT + +LR
Sbjct: 367 DRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAFGFSLRGAVD 426
Query: 238 ADHHGFP 244
D +G+P
Sbjct: 427 IDDNGYP 433
>pdb|1TYE|A Chain A, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|C Chain C, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|E Chain E, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
Length = 452
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 180 DRAGYDDPAIVTGIGSMDGR--TYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYY 237
DR GY+D A+ G GR +F+G +G ++ + + PT + +LR
Sbjct: 367 DRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAFGFSLRGAVD 426
Query: 238 ADHHGFP 244
D +G+P
Sbjct: 427 IDDNGYP 433
>pdb|2VC2|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist L-739758
pdb|2VDK|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDL|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDM|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Tirofiban
pdb|2VDN|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Eptifibatide
pdb|2VDO|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide, Hhlggakqagdv
pdb|2VDP|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide,Lggakqagdv
pdb|2VDQ|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Hhlggakqrgdv
pdb|2VDR|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Lggakqrgdv
Length = 452
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 180 DRAGYDDPAIVTGIGSMDGR--TYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYY 237
DR GY+D A+ G GR +F+G +G ++ + + PT + +LR
Sbjct: 367 DRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAFGFSLRGAVD 426
Query: 238 ADHHGFP 244
D +G+P
Sbjct: 427 IDDNGYP 433
>pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase
(Saro_0793) From Novosphingobium Aromaticivorans
pdb|3IOY|B Chain B, Structure Of Putative Short-Chain Dehydrogenase
(Saro_0793) From Novosphingobium Aromaticivorans
Length = 319
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 689 GKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEISDATKSPG 739
G +PDV I+A++ S + EL+E +E++AE D K PG
Sbjct: 235 GMEPDVIGARVIEAMKANRLHIFSHPDHKEELREVFDEIIAEYQDYPKDPG 285
>pdb|1OED|B Chain B, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 250
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 541 DMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIK-AKLQDSGASSFS 599
D + NA+ + + +++K +N + V D+KE +EAIK Q AS F
Sbjct: 147 DFVCPVDNARVAVQPERLFSEMKWHLNGLTQPVTLPQDLKEAVEAIKYIAEQLESASEFD 206
Query: 600 DLEDD 604
DL+ D
Sbjct: 207 DLKKD 211
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 493
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 541 DMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKL-QDSGASSFS 599
D + NA+ + + +++K +N + V D+KE +EAIK Q AS F
Sbjct: 387 DFVCPVDNARVAVQPERLFSEMKWHLNGLTQPVTLPQDLKEAVEAIKYIAEQLESASEFD 446
Query: 600 DLEDDLK 606
DL+ D +
Sbjct: 447 DLKKDWQ 453
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,607,172
Number of Sequences: 62578
Number of extensions: 820731
Number of successful extensions: 1937
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1899
Number of HSP's gapped (non-prelim): 59
length of query: 773
length of database: 14,973,337
effective HSP length: 106
effective length of query: 667
effective length of database: 8,340,069
effective search space: 5562826023
effective search space used: 5562826023
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)