Query 004120
Match_columns 773
No_of_seqs 452 out of 2111
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 17:54:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03229 acetyl-coenzyme A car 100.0 1E-204 2E-209 1715.8 72.1 759 1-765 1-762 (762)
2 PLN03230 acetyl-coenzyme A car 100.0 2E-103 5E-108 851.2 37.8 397 27-428 7-407 (431)
3 COG0825 AccA Acetyl-CoA carbox 100.0 1.7E-94 3.6E-99 747.7 27.8 316 94-409 2-317 (317)
4 CHL00198 accA acetyl-CoA carbo 100.0 5.7E-85 1.2E-89 693.8 34.5 317 92-408 4-320 (322)
5 PRK05724 acetyl-CoA carboxylas 100.0 1.7E-83 3.6E-88 682.9 34.7 316 94-409 3-318 (319)
6 TIGR00513 accA acetyl-CoA carb 100.0 4.1E-82 9E-87 671.6 35.6 314 94-407 3-316 (316)
7 PRK12319 acetyl-CoA carboxylas 100.0 3.4E-62 7.4E-67 508.3 30.0 254 147-404 3-256 (256)
8 PLN03229 acetyl-coenzyme A car 100.0 2.5E-51 5.4E-56 466.7 32.7 251 479-742 424-693 (762)
9 TIGR01117 mmdA methylmalonyl-C 100.0 5E-40 1.1E-44 371.0 25.8 300 47-381 142-495 (512)
10 PF01039 Carboxyl_trans: Carbo 100.0 7.6E-41 1.6E-45 376.3 15.0 304 46-384 118-481 (493)
11 PF03255 ACCA: Acetyl co-enzym 100.0 6E-41 1.3E-45 320.1 4.6 145 95-239 1-145 (145)
12 PLN02820 3-methylcrotonyl-CoA 100.0 2.3E-38 5E-43 360.3 25.5 297 47-381 192-554 (569)
13 TIGR03134 malonate_gamma malon 100.0 7.3E-39 1.6E-43 330.7 19.3 182 163-360 2-191 (238)
14 COG4799 Acetyl-CoA carboxylase 100.0 1.1E-37 2.5E-42 348.1 18.6 212 152-384 278-511 (526)
15 KOG0540 3-Methylcrotonyl-CoA c 100.0 8E-32 1.7E-36 292.4 15.8 206 155-383 306-523 (536)
16 PRK05654 acetyl-CoA carboxylas 100.0 4.9E-29 1.1E-33 264.5 23.0 202 143-381 55-280 (292)
17 TIGR00515 accD acetyl-CoA carb 100.0 1.6E-28 3.4E-33 259.8 23.1 202 143-381 54-279 (285)
18 TIGR03133 malonate_beta malona 99.9 1.7E-25 3.6E-30 235.5 23.0 224 143-395 3-247 (274)
19 PLN02820 3-methylcrotonyl-CoA 99.9 2.1E-25 4.6E-30 254.6 25.2 201 98-326 42-252 (569)
20 PRK07189 malonate decarboxylas 99.9 1.7E-25 3.6E-30 237.9 20.2 209 141-380 10-241 (301)
21 CHL00174 accD acetyl-CoA carbo 99.9 2.2E-24 4.8E-29 228.6 22.7 199 143-378 66-290 (296)
22 COG4799 Acetyl-CoA carboxylase 99.9 6.1E-24 1.3E-28 238.4 15.4 164 143-328 40-212 (526)
23 TIGR01117 mmdA methylmalonyl-C 99.9 1.7E-22 3.8E-27 229.0 23.5 194 143-378 28-240 (512)
24 PF01039 Carboxyl_trans: Carbo 99.9 3.6E-22 7.9E-27 225.5 18.2 189 142-357 4-204 (493)
25 COG0777 AccD Acetyl-CoA carbox 99.8 5.3E-20 1.1E-24 191.7 20.1 157 185-356 108-265 (294)
26 KOG0540 3-Methylcrotonyl-CoA c 99.8 2.1E-19 4.5E-24 196.3 11.3 185 142-367 60-250 (536)
27 PF06833 MdcE: Malonate decarb 99.7 1.7E-16 3.7E-21 163.6 13.7 161 186-357 16-186 (234)
28 KOG0368 Acetyl-CoA carboxylase 99.1 3.4E-11 7.3E-16 145.0 3.5 184 142-330 1782-2000(2196)
29 KOG0016 Enoyl-CoA hydratase/is 99.1 7.8E-10 1.7E-14 115.7 12.3 164 219-395 28-219 (266)
30 COG0777 AccD Acetyl-CoA carbox 99.0 9.5E-11 2E-15 123.2 2.6 76 45-143 180-264 (294)
31 cd07020 Clp_protease_NfeD_1 No 98.9 5.2E-09 1.1E-13 104.8 9.8 127 221-357 8-164 (187)
32 PF00378 ECH: Enoyl-CoA hydrat 98.9 2.7E-08 5.8E-13 102.6 14.2 175 196-393 4-200 (245)
33 PRK06023 enoyl-CoA hydratase; 98.8 9.5E-08 2.1E-12 99.6 17.3 163 219-394 26-208 (251)
34 TIGR02280 PaaB1 phenylacetate 98.8 1.8E-07 3.9E-12 97.7 17.7 160 221-393 21-203 (256)
35 PRK08150 enoyl-CoA hydratase; 98.8 1.6E-07 3.4E-12 98.4 17.2 160 220-393 23-202 (255)
36 PRK08140 enoyl-CoA hydratase; 98.8 1.7E-07 3.6E-12 98.1 17.0 161 221-394 26-210 (262)
37 PLN02664 enoyl-CoA hydratase/d 98.8 1.9E-07 4.1E-12 98.7 17.4 162 220-393 29-222 (275)
38 PRK06142 enoyl-CoA hydratase; 98.8 3.4E-07 7.4E-12 96.5 18.1 164 220-395 27-222 (272)
39 PRK05981 enoyl-CoA hydratase; 98.8 2.3E-07 5.1E-12 97.3 16.8 161 220-393 25-213 (266)
40 PRK06688 enoyl-CoA hydratase; 98.8 2.3E-07 5E-12 96.7 16.4 160 221-393 27-206 (259)
41 PRK07327 enoyl-CoA hydratase; 98.8 3E-07 6.4E-12 96.9 17.3 162 221-395 34-218 (268)
42 PRK09076 enoyl-CoA hydratase; 98.7 3E-07 6.5E-12 96.3 17.1 160 221-393 24-205 (258)
43 PRK06143 enoyl-CoA hydratase; 98.7 3.2E-07 6.8E-12 96.2 17.3 163 220-396 28-212 (256)
44 PRK05809 3-hydroxybutyryl-CoA 98.7 2.8E-07 6.2E-12 96.3 16.6 160 221-393 26-207 (260)
45 PRK09120 p-hydroxycinnamoyl Co 98.7 2E-07 4.3E-12 98.7 15.7 161 220-393 29-214 (275)
46 PRK06127 enoyl-CoA hydratase; 98.7 3.1E-07 6.8E-12 96.8 16.8 162 220-394 32-217 (269)
47 PRK05862 enoyl-CoA hydratase; 98.7 3.7E-07 8.1E-12 95.4 17.2 161 220-393 25-204 (257)
48 PRK05995 enoyl-CoA hydratase; 98.7 3.3E-07 7.2E-12 95.9 16.7 160 221-394 26-209 (262)
49 PRK11423 methylmalonyl-CoA dec 98.7 2.6E-07 5.7E-12 97.0 15.9 161 220-393 25-206 (261)
50 PRK07657 enoyl-CoA hydratase; 98.7 3.3E-07 7.2E-12 95.9 16.5 163 220-395 25-209 (260)
51 PRK09674 enoyl-CoA hydratase-i 98.7 3.7E-07 8.1E-12 95.4 16.8 162 220-394 23-203 (255)
52 TIGR03210 badI 2-ketocyclohexa 98.7 4.2E-07 9.2E-12 95.2 16.9 161 220-394 23-205 (256)
53 PRK06563 enoyl-CoA hydratase; 98.7 3.7E-07 7.9E-12 95.4 16.2 160 221-393 21-202 (255)
54 PRK08258 enoyl-CoA hydratase; 98.7 5.5E-07 1.2E-11 95.4 17.5 162 220-394 38-225 (277)
55 PRK07511 enoyl-CoA hydratase; 98.7 7E-07 1.5E-11 93.4 18.0 160 221-393 25-208 (260)
56 PRK07468 enoyl-CoA hydratase; 98.7 5.7E-07 1.2E-11 94.4 17.3 160 220-393 26-209 (262)
57 PRK07854 enoyl-CoA hydratase; 98.7 5.3E-07 1.2E-11 93.8 16.9 137 220-356 21-172 (243)
58 PRK07659 enoyl-CoA hydratase; 98.7 3.4E-07 7.4E-12 96.0 15.4 161 220-394 27-208 (260)
59 PRK06213 enoyl-CoA hydratase; 98.7 8.3E-07 1.8E-11 91.3 17.9 161 221-396 24-205 (229)
60 PRK03580 carnitinyl-CoA dehydr 98.7 5.2E-07 1.1E-11 94.6 16.7 160 221-393 24-204 (261)
61 PRK05674 gamma-carboxygeranoyl 98.7 7.1E-07 1.5E-11 94.0 17.5 160 221-394 28-211 (265)
62 PRK05869 enoyl-CoA hydratase; 98.7 6.2E-07 1.3E-11 92.3 16.8 163 221-396 29-212 (222)
63 PRK05980 enoyl-CoA hydratase; 98.7 6.2E-07 1.3E-11 93.8 17.0 161 221-394 25-211 (260)
64 PRK07260 enoyl-CoA hydratase; 98.7 9E-07 2E-11 92.5 18.1 163 221-396 24-211 (255)
65 PRK09245 enoyl-CoA hydratase; 98.7 5.4E-07 1.2E-11 94.6 16.4 162 221-395 25-215 (266)
66 TIGR01929 menB naphthoate synt 98.7 4.1E-07 8.9E-12 95.4 15.3 160 221-393 25-207 (259)
67 PRK06144 enoyl-CoA hydratase; 98.7 7.5E-07 1.6E-11 93.6 17.3 163 220-395 29-215 (262)
68 cd07021 Clp_protease_NfeD_like 98.7 1.3E-07 2.9E-12 94.8 10.9 88 221-318 8-96 (178)
69 PRK06190 enoyl-CoA hydratase; 98.7 8.3E-07 1.8E-11 93.4 17.4 161 220-393 25-204 (258)
70 PRK08252 enoyl-CoA hydratase; 98.7 9.1E-07 2E-11 92.5 17.5 161 221-394 25-202 (254)
71 PLN02600 enoyl-CoA hydratase 98.7 9E-07 2E-11 92.5 17.3 160 221-393 17-198 (251)
72 PRK07658 enoyl-CoA hydratase; 98.6 9.1E-07 2E-11 92.3 16.5 160 221-393 23-204 (257)
73 PRK06494 enoyl-CoA hydratase; 98.6 1.5E-06 3.3E-11 91.0 17.9 161 221-394 26-205 (259)
74 PRK08138 enoyl-CoA hydratase; 98.6 8.2E-07 1.8E-11 93.2 15.9 138 221-358 30-186 (261)
75 PRK05864 enoyl-CoA hydratase; 98.6 1.5E-06 3.4E-11 91.9 17.9 161 221-394 32-221 (276)
76 PRK08260 enoyl-CoA hydratase; 98.6 1.3E-06 2.7E-11 93.5 17.2 138 220-357 25-200 (296)
77 cd07015 Clp_protease_NfeD Nodu 98.6 2.6E-07 5.6E-12 92.5 11.1 127 221-357 8-164 (172)
78 cd06558 crotonase-like Crotona 98.6 9E-07 1.9E-11 87.4 14.8 138 220-357 20-180 (195)
79 PRK08259 enoyl-CoA hydratase; 98.6 8.8E-07 1.9E-11 92.8 15.5 163 220-395 24-205 (254)
80 PLN03214 probable enoyl-CoA hy 98.6 2.1E-06 4.6E-11 91.3 18.5 161 221-394 33-219 (278)
81 PRK07110 polyketide biosynthes 98.6 1.6E-06 3.4E-11 90.6 17.2 161 221-394 27-205 (249)
82 PRK07396 dihydroxynaphthoic ac 98.6 1.1E-06 2.3E-11 93.1 15.9 160 221-394 35-218 (273)
83 PRK08139 enoyl-CoA hydratase; 98.6 1.3E-06 2.7E-11 92.2 16.4 162 220-395 32-215 (266)
84 PRK08321 naphthoate synthase; 98.6 1.6E-06 3.5E-11 93.2 17.2 161 220-393 46-246 (302)
85 PRK05870 enoyl-CoA hydratase; 98.6 7.7E-07 1.7E-11 92.8 14.2 160 220-394 24-204 (249)
86 TIGR03189 dienoyl_CoA_hyt cycl 98.6 2.1E-06 4.6E-11 89.9 17.4 136 221-357 22-175 (251)
87 PLN02888 enoyl-CoA hydratase 98.6 1.4E-06 3.1E-11 91.8 16.1 160 221-393 32-209 (265)
88 PRK07799 enoyl-CoA hydratase; 98.6 1.7E-06 3.6E-11 90.8 16.5 159 221-393 27-210 (263)
89 PRK06210 enoyl-CoA hydratase; 98.6 1.5E-06 3.3E-11 91.5 16.1 161 220-393 27-219 (272)
90 PRK08272 enoyl-CoA hydratase; 98.6 1.7E-06 3.7E-11 92.8 16.7 161 220-397 31-238 (302)
91 cd07016 S14_ClpP_1 Caseinolyti 98.5 1.6E-07 3.5E-12 91.3 7.6 119 226-355 15-160 (160)
92 PRK06495 enoyl-CoA hydratase; 98.5 3.3E-06 7.2E-11 88.4 17.8 163 221-397 25-208 (257)
93 PRK07112 polyketide biosynthes 98.5 3.7E-06 8E-11 88.1 17.9 156 221-393 26-203 (255)
94 PRK07509 enoyl-CoA hydratase; 98.5 2.7E-06 5.9E-11 89.0 16.1 162 220-396 24-213 (262)
95 PRK07827 enoyl-CoA hydratase; 98.5 2.5E-06 5.5E-11 89.4 15.7 159 220-394 27-209 (260)
96 PLN02921 naphthoate synthase 98.5 2.8E-06 6E-11 92.7 16.5 161 220-393 88-271 (327)
97 cd07014 S49_SppA Signal peptid 98.5 2.3E-06 5E-11 84.8 13.9 124 226-356 22-167 (177)
98 PRK07938 enoyl-CoA hydratase; 98.5 4.7E-06 1E-10 87.1 16.8 160 221-394 23-202 (249)
99 PLN02267 enoyl-CoA hydratase/i 98.5 1.4E-05 3.1E-10 83.2 19.5 135 222-357 22-183 (239)
100 COG1024 CaiD Enoyl-CoA hydrata 98.4 7.6E-06 1.6E-10 85.6 17.2 137 221-358 27-186 (257)
101 PRK08290 enoyl-CoA hydratase; 98.4 5.4E-06 1.2E-10 88.7 15.6 161 220-393 25-226 (288)
102 PRK08788 enoyl-CoA hydratase; 98.4 1.1E-05 2.5E-10 86.5 18.1 137 221-357 38-208 (287)
103 PRK05617 3-hydroxyisobutyryl-C 98.4 7.3E-06 1.6E-10 89.8 16.5 137 220-357 24-186 (342)
104 PRK06072 enoyl-CoA hydratase; 98.3 1.6E-05 3.4E-10 83.1 16.8 134 220-354 21-172 (248)
105 TIGR03200 dearomat_oah 6-oxocy 98.3 1.5E-05 3.3E-10 88.0 15.8 147 221-367 50-223 (360)
106 cd00394 Clp_protease_like Case 98.3 7E-06 1.5E-10 79.5 11.0 90 220-319 5-96 (161)
107 PRK12553 ATP-dependent Clp pro 98.2 6.2E-06 1.3E-10 84.6 10.5 132 216-357 37-201 (207)
108 PRK12478 enoyl-CoA hydratase; 98.2 2E-05 4.3E-10 84.8 14.8 159 220-393 26-219 (298)
109 PLN02874 3-hydroxyisobutyryl-C 98.2 6.5E-05 1.4E-09 83.6 18.3 136 221-357 33-191 (379)
110 PLN02157 3-hydroxyisobutyryl-C 98.1 7.5E-05 1.6E-09 83.9 17.4 136 220-358 58-220 (401)
111 PLN02851 3-hydroxyisobutyryl-C 98.1 8.8E-05 1.9E-09 83.5 17.8 167 220-401 63-253 (407)
112 PRK00277 clpP ATP-dependent Cl 98.1 2E-05 4.2E-10 80.5 11.0 131 217-357 34-195 (200)
113 PRK08184 benzoyl-CoA-dihydrodi 98.0 5.5E-05 1.2E-09 88.0 14.4 160 221-393 297-491 (550)
114 PRK11730 fadB multifunctional 98.0 0.0001 2.2E-09 88.2 16.9 137 221-357 29-189 (715)
115 PLN02988 3-hydroxyisobutyryl-C 98.0 0.00015 3.2E-09 81.0 16.6 138 221-358 31-192 (381)
116 PRK14512 ATP-dependent Clp pro 98.0 5E-05 1.1E-09 77.6 11.9 130 218-357 27-187 (197)
117 cd07013 S14_ClpP Caseinolytic 98.0 5.2E-05 1.1E-09 74.9 11.3 91 219-319 5-99 (162)
118 KOG1680 Enoyl-CoA hydratase [L 98.0 7.2E-05 1.6E-09 79.8 12.7 153 198-359 44-216 (290)
119 TIGR02441 fa_ox_alpha_mit fatt 97.9 0.00034 7.3E-09 84.1 18.2 138 221-358 36-198 (737)
120 cd07018 S49_SppA_67K_type Sign 97.9 0.00011 2.5E-09 75.7 12.3 91 220-318 23-115 (222)
121 CHL00028 clpP ATP-dependent Cl 97.9 9.1E-05 2E-09 76.0 11.1 134 214-357 30-195 (200)
122 PRK11154 fadJ multifunctional 97.9 0.00037 7.9E-09 83.4 17.7 137 221-357 29-190 (708)
123 TIGR02440 FadJ fatty oxidation 97.9 0.00021 4.6E-09 85.2 15.7 137 221-357 24-185 (699)
124 TIGR02437 FadB fatty oxidation 97.9 0.00026 5.5E-09 84.8 16.0 138 220-357 28-189 (714)
125 TIGR00706 SppA_dom signal pept 97.9 0.00013 2.7E-09 74.6 11.5 80 228-315 15-96 (207)
126 TIGR03222 benzo_boxC benzoyl-C 97.9 0.00031 6.8E-09 81.7 16.1 160 221-393 293-487 (546)
127 cd07017 S14_ClpP_2 Caseinolyti 97.8 5.8E-05 1.3E-09 75.0 8.7 95 215-319 10-108 (171)
128 TIGR00493 clpP ATP-dependent C 97.8 0.00012 2.5E-09 74.5 11.0 132 215-356 27-189 (191)
129 PF00574 CLP_protease: Clp pro 97.8 7E-05 1.5E-09 74.4 9.3 134 214-357 16-180 (182)
130 PRK14514 ATP-dependent Clp pro 97.8 0.00012 2.6E-09 76.3 10.0 135 213-357 53-218 (221)
131 PRK12551 ATP-dependent Clp pro 97.8 0.00013 2.9E-09 74.6 10.1 134 214-357 25-189 (196)
132 TIGR03222 benzo_boxC benzoyl-C 97.8 0.00058 1.2E-08 79.6 16.3 137 221-357 43-211 (546)
133 PRK08184 benzoyl-CoA-dihydrodi 97.7 0.00042 9.1E-09 80.8 14.0 137 221-357 47-215 (550)
134 cd07023 S49_Sppa_N_C Signal pe 97.7 9.9E-05 2.2E-09 75.0 7.5 87 225-318 16-104 (208)
135 COG1030 NfeD Membrane-bound se 97.6 0.0003 6.5E-09 79.3 11.0 137 197-356 24-186 (436)
136 PRK14513 ATP-dependent Clp pro 97.6 0.00031 6.7E-09 72.3 9.5 135 214-358 27-192 (201)
137 cd07022 S49_Sppa_36K_type Sign 97.5 0.00046 1E-08 70.8 9.7 90 221-318 20-111 (214)
138 TIGR00705 SppA_67K signal pept 97.4 0.001 2.2E-08 78.1 12.7 80 228-314 331-412 (584)
139 COG0616 SppA Periplasmic serin 97.4 0.00042 9.1E-09 75.6 8.3 90 222-320 79-168 (317)
140 PF01972 SDH_sah: Serine dehyd 97.4 0.00075 1.6E-08 72.3 9.8 88 221-319 70-157 (285)
141 cd07019 S49_SppA_1 Signal pept 97.4 0.00055 1.2E-08 70.2 8.4 85 227-318 22-108 (211)
142 CHL00174 accD acetyl-CoA carbo 97.4 5.6E-05 1.2E-09 81.7 1.2 76 45-143 191-276 (296)
143 COG0447 MenB Dihydroxynaphthoi 97.1 0.0026 5.6E-08 66.4 9.9 164 221-401 41-231 (282)
144 COG0740 ClpP Protease subunit 97.1 0.0026 5.7E-08 65.6 9.5 131 218-358 31-192 (200)
145 PRK12552 ATP-dependent Clp pro 97.0 0.0029 6.3E-08 66.2 8.9 125 232-357 59-213 (222)
146 PRK11778 putative inner membra 96.9 0.0033 7.1E-08 69.3 8.9 69 243-318 124-192 (330)
147 KOG0368 Acetyl-CoA carboxylase 96.8 0.0054 1.2E-07 76.7 9.9 146 173-328 1515-1731(2196)
148 PRK10949 protease 4; Provision 96.7 0.021 4.5E-07 67.9 14.0 87 220-315 344-431 (618)
149 KOG0840 ATP-dependent Clp prot 96.6 0.0069 1.5E-07 64.4 7.9 138 213-360 91-259 (275)
150 KOG1682 Enoyl-CoA isomerase [L 96.1 0.019 4E-07 59.7 7.9 87 268-359 113-213 (287)
151 TIGR00515 accD acetyl-CoA carb 96.0 0.0024 5.3E-08 69.0 1.2 75 45-142 178-261 (285)
152 PRK05654 acetyl-CoA carboxylas 95.8 0.0023 4.9E-08 69.4 -0.2 75 45-142 179-262 (292)
153 KOG1681 Enoyl-CoA isomerase [L 94.7 0.028 6E-07 59.3 3.6 92 266-357 112-214 (292)
154 PF06160 EzrA: Septation ring 94.4 6.5 0.00014 46.6 22.6 209 466-726 120-331 (560)
155 PF01343 Peptidase_S49: Peptid 94.2 0.069 1.5E-06 52.3 5.1 38 278-315 4-41 (154)
156 PRK01156 chromosome segregatio 94.0 7.6 0.00016 48.1 23.1 15 436-450 194-208 (895)
157 PF07798 DUF1640: Protein of u 94.0 0.38 8.1E-06 48.6 9.8 74 604-688 84-157 (177)
158 PRK03918 chromosome segregatio 93.9 4.3 9.3E-05 49.7 20.6 10 195-204 78-87 (880)
159 PRK04778 septation ring format 92.2 16 0.00036 43.3 21.3 94 433-527 166-269 (569)
160 PF07888 CALCOCO1: Calcium bin 92.1 9.7 0.00021 45.2 18.8 14 718-731 441-454 (546)
161 KOG0996 Structural maintenance 91.5 36 0.00078 43.7 23.4 65 435-499 830-902 (1293)
162 TIGR00705 SppA_67K signal pept 91.3 2.5 5.4E-05 50.3 13.3 83 225-315 75-160 (584)
163 PRK04778 septation ring format 91.2 39 0.00084 40.2 26.4 134 476-620 134-269 (569)
164 TIGR02169 SMC_prok_A chromosom 91.2 11 0.00024 47.1 19.5 15 436-450 678-692 (1164)
165 PRK01156 chromosome segregatio 91.0 11 0.00023 46.7 18.9 9 720-728 435-443 (895)
166 COG1196 Smc Chromosome segrega 90.9 17 0.00036 46.8 20.9 21 433-453 194-214 (1163)
167 TIGR00606 rad50 rad50. This fa 90.4 11 0.00023 49.1 18.7 122 513-639 300-429 (1311)
168 PRK03918 chromosome segregatio 90.3 54 0.0012 40.4 24.2 30 579-609 424-453 (880)
169 PF00038 Filament: Intermediat 90.1 21 0.00047 38.4 18.1 158 434-621 20-183 (312)
170 PF10498 IFT57: Intra-flagella 89.8 5.3 0.00011 45.0 13.5 112 561-709 227-346 (359)
171 PF07798 DUF1640: Protein of u 89.7 14 0.0003 37.4 15.2 73 649-733 84-156 (177)
172 KOG0996 Structural maintenance 89.3 71 0.0015 41.2 23.3 10 439-448 778-787 (1293)
173 TIGR03185 DNA_S_dndD DNA sulfu 89.3 24 0.00051 42.5 19.3 22 457-478 292-313 (650)
174 TIGR00606 rad50 rad50. This fa 89.2 55 0.0012 42.8 23.6 130 522-668 519-655 (1311)
175 smart00787 Spc7 Spc7 kinetocho 88.4 14 0.0003 41.1 15.3 161 535-731 114-287 (312)
176 KOG4643 Uncharacterized coiled 88.2 17 0.00036 45.8 16.9 89 512-615 182-272 (1195)
177 PF08317 Spc7: Spc7 kinetochor 87.0 29 0.00063 38.4 16.9 159 535-731 119-292 (325)
178 PHA02562 46 endonuclease subun 85.8 77 0.0017 36.9 20.8 16 436-451 178-193 (562)
179 TIGR03185 DNA_S_dndD DNA sulfu 85.6 93 0.002 37.6 28.3 28 374-401 167-194 (650)
180 KOG4674 Uncharacterized conser 84.8 40 0.00086 45.3 18.5 153 457-644 1145-1300(1822)
181 COG1196 Smc Chromosome segrega 84.7 25 0.00053 45.3 16.9 51 512-566 198-248 (1163)
182 PLN02939 transferase, transfer 84.6 12 0.00027 47.1 13.6 99 579-690 298-404 (977)
183 PF12128 DUF3584: Protein of u 84.6 1E+02 0.0022 40.2 22.2 21 433-453 601-621 (1201)
184 PRK02224 chromosome segregatio 84.4 1.2E+02 0.0025 37.7 23.8 8 281-288 67-74 (880)
185 PRK02224 chromosome segregatio 84.0 1.2E+02 0.0026 37.6 24.2 13 674-686 389-401 (880)
186 KOG0977 Nuclear envelope prote 83.8 17 0.00038 43.1 13.8 80 578-659 246-331 (546)
187 KOG0971 Microtubule-associated 83.6 18 0.00039 45.1 13.9 53 534-591 258-310 (1243)
188 KOG0976 Rho/Rac1-interacting s 82.8 49 0.0011 41.1 16.9 134 562-710 352-509 (1265)
189 PF07464 ApoLp-III: Apolipopho 82.2 4.2 9.2E-05 40.8 7.0 90 556-671 44-136 (155)
190 KOG0250 DNA repair protein RAD 80.7 92 0.002 39.9 18.8 16 438-453 234-249 (1074)
191 PF12128 DUF3584: Protein of u 80.6 1.1E+02 0.0023 40.0 20.3 11 717-727 934-944 (1201)
192 KOG3215 Uncharacterized conser 80.5 21 0.00045 37.6 11.4 109 603-731 36-159 (222)
193 PF15450 DUF4631: Domain of un 80.5 35 0.00076 40.3 14.4 152 511-687 305-466 (531)
194 PF06160 EzrA: Septation ring 80.4 62 0.0013 38.6 16.9 109 433-545 246-358 (560)
195 KOG2150 CCR4-NOT transcription 80.3 23 0.00049 42.2 12.9 13 561-573 5-17 (575)
196 KOG0946 ER-Golgi vesicle-tethe 79.8 1.7E+02 0.0038 36.6 20.1 37 696-735 902-938 (970)
197 PF13514 AAA_27: AAA domain 79.7 1.5E+02 0.0033 38.1 21.2 224 500-733 144-385 (1111)
198 PF09731 Mitofilin: Mitochondr 79.2 59 0.0013 38.5 16.2 43 699-743 452-494 (582)
199 KOG0995 Centromere-associated 78.7 1.6E+02 0.0034 35.5 20.0 35 699-733 536-571 (581)
200 PF10498 IFT57: Intra-flagella 78.7 26 0.00057 39.7 12.5 161 423-617 182-345 (359)
201 PF09731 Mitofilin: Mitochondr 78.0 1E+02 0.0022 36.5 17.7 151 535-710 330-485 (582)
202 KOG0018 Structural maintenance 77.9 1.1E+02 0.0024 39.3 18.1 61 432-501 153-213 (1141)
203 KOG1684 Enoyl-CoA hydratase [L 76.7 1.2E+02 0.0025 34.9 16.5 164 220-401 59-251 (401)
204 TIGR02169 SMC_prok_A chromosom 76.6 2.2E+02 0.0047 36.0 25.6 16 438-453 673-688 (1164)
205 KOG0972 Huntingtin interacting 76.3 12 0.00027 41.2 8.7 79 624-707 268-351 (384)
206 PF05701 WEMBL: Weak chloropla 76.3 1.7E+02 0.0037 34.7 20.1 21 433-453 28-48 (522)
207 KOG0161 Myosin class II heavy 75.8 2.5E+02 0.0054 38.7 21.6 19 435-453 841-859 (1930)
208 COG1340 Uncharacterized archae 75.7 1.4E+02 0.003 33.3 19.6 120 463-590 67-188 (294)
209 KOG0994 Extracellular matrix g 74.5 1.4E+02 0.0031 38.7 17.7 33 512-544 1473-1505(1758)
210 PRK10949 protease 4; Provision 74.3 12 0.00025 45.2 8.8 85 225-317 94-181 (618)
211 KOG1679 Enoyl-CoA hydratase [L 74.2 3 6.4E-05 44.3 3.3 115 242-358 75-212 (291)
212 TIGR02168 SMC_prok_B chromosom 73.9 1.2E+02 0.0027 37.9 17.8 11 720-730 412-422 (1179)
213 PHA02562 46 endonuclease subun 73.8 1.8E+02 0.004 33.8 21.8 36 465-503 213-248 (562)
214 COG1340 Uncharacterized archae 73.7 1.5E+02 0.0034 32.9 17.0 99 488-591 68-168 (294)
215 KOG0612 Rho-associated, coiled 73.6 1.7E+02 0.0036 38.3 18.3 28 704-731 699-726 (1317)
216 PF09728 Taxilin: Myosin-like 72.2 1.7E+02 0.0036 32.6 16.6 109 555-677 48-156 (309)
217 KOG4674 Uncharacterized conser 71.6 3.7E+02 0.008 36.9 21.3 67 433-504 739-820 (1822)
218 PF04778 LMP: LMP repeated reg 71.5 61 0.0013 32.8 11.4 108 463-572 12-133 (157)
219 PF05701 WEMBL: Weak chloropla 71.4 2.2E+02 0.0048 33.8 19.7 17 435-451 175-191 (522)
220 PF07888 CALCOCO1: Calcium bin 71.3 1.3E+02 0.0028 36.2 15.9 34 698-734 283-316 (546)
221 KOG0963 Transcription factor/C 70.8 1.1E+02 0.0023 37.2 15.1 175 531-735 256-438 (629)
222 PRK04863 mukB cell division pr 69.9 1.2E+02 0.0025 40.7 16.7 81 649-729 446-527 (1486)
223 KOG0979 Structural maintenance 69.6 2.4E+02 0.0051 36.3 18.1 183 472-675 244-430 (1072)
224 PF00038 Filament: Intermediat 69.0 35 0.00075 36.8 10.2 18 435-452 50-67 (312)
225 KOG0994 Extracellular matrix g 68.6 1.8E+02 0.004 37.9 16.9 97 635-736 1449-1556(1758)
226 PF06626 DUF1152: Protein of u 67.8 14 0.0003 40.9 6.8 70 224-295 101-171 (297)
227 PF15294 Leu_zip: Leucine zipp 66.6 1.3E+02 0.0029 33.2 13.8 217 436-688 12-234 (278)
228 TIGR00634 recN DNA repair prot 65.7 2.6E+02 0.0056 33.3 17.2 62 532-593 302-365 (563)
229 KOG0250 DNA repair protein RAD 64.9 3.1E+02 0.0068 35.5 18.1 17 672-688 397-413 (1074)
230 PF06810 Phage_GP20: Phage min 64.9 36 0.00078 34.1 8.6 93 514-628 2-95 (155)
231 PF05622 HOOK: HOOK protein; 62.7 2.5 5.3E-05 51.3 0.0 39 463-501 272-310 (713)
232 PF04286 DUF445: Protein of un 62.2 2.3E+02 0.0051 30.6 20.8 131 556-718 137-267 (367)
233 PF07464 ApoLp-III: Apolipopho 62.1 23 0.0005 35.7 6.7 47 679-731 102-148 (155)
234 PRK10884 SH3 domain-containing 60.0 1.1E+02 0.0024 32.1 11.5 19 575-593 87-105 (206)
235 KOG0933 Structural maintenance 58.5 3.8E+02 0.0083 34.6 17.0 192 408-617 650-853 (1174)
236 PRK04863 mukB cell division pr 58.2 4.9E+02 0.011 35.2 19.1 43 512-554 395-437 (1486)
237 KOG0995 Centromere-associated 57.4 4.3E+02 0.0092 32.1 18.0 66 502-578 187-259 (581)
238 PF08317 Spc7: Spc7 kinetochor 57.3 1.3E+02 0.0029 33.3 12.2 81 650-735 182-264 (325)
239 TIGR01005 eps_transp_fam exopo 56.9 58 0.0013 39.8 10.2 41 598-638 311-354 (754)
240 PRK09039 hypothetical protein; 56.4 1.9E+02 0.0042 32.5 13.3 87 514-626 123-209 (343)
241 PRK09039 hypothetical protein; 55.8 1.1E+02 0.0024 34.4 11.4 32 693-724 167-199 (343)
242 KOG0796 Spliceosome subunit [R 55.7 1.4E+02 0.003 33.6 11.7 76 584-668 63-138 (319)
243 KOG0964 Structural maintenance 54.9 5.9E+02 0.013 33.0 18.3 26 709-734 909-935 (1200)
244 TIGR02168 SMC_prok_B chromosom 54.0 5.5E+02 0.012 32.3 21.5 12 196-207 21-32 (1179)
245 PF04778 LMP: LMP repeated reg 53.7 2.6E+02 0.0057 28.5 13.2 124 551-714 8-134 (157)
246 PF09789 DUF2353: Uncharacteri 53.6 1.2E+02 0.0026 34.1 10.9 99 557-666 79-182 (319)
247 COG2433 Uncharacterized conser 53.4 99 0.0021 37.5 10.8 29 651-682 480-508 (652)
248 PF01442 Apolipoprotein: Apoli 53.2 2.2E+02 0.0048 27.5 17.4 11 561-571 38-48 (202)
249 PF04065 Not3: Not1 N-terminal 53.1 3.3E+02 0.0071 29.4 15.3 73 564-642 77-149 (233)
250 KOG4643 Uncharacterized coiled 53.0 4.5E+02 0.0098 34.0 16.4 134 579-731 528-663 (1195)
251 PRK11637 AmiB activator; Provi 52.9 4E+02 0.0088 30.5 20.7 22 605-626 115-136 (428)
252 PRK11281 hypothetical protein; 52.3 6.8E+02 0.015 32.9 19.8 129 488-635 169-305 (1113)
253 KOG0933 Structural maintenance 52.2 6.6E+02 0.014 32.7 20.5 248 435-731 247-502 (1174)
254 COG1570 XseA Exonuclease VII, 51.4 1E+02 0.0022 36.1 10.3 91 223-329 173-263 (440)
255 PF13166 AAA_13: AAA domain 51.1 5.2E+02 0.011 31.2 19.3 33 697-729 437-469 (712)
256 KOG0612 Rho-associated, coiled 50.5 1.5E+02 0.0032 38.7 12.2 16 671-686 618-633 (1317)
257 PF07794 DUF1633: Protein of u 50.2 1.5E+02 0.0033 35.2 11.3 200 516-747 511-733 (790)
258 PF14357 DUF4404: Domain of un 49.0 42 0.0009 30.5 5.5 39 579-622 2-40 (85)
259 PRK11546 zraP zinc resistance 48.6 1.4E+02 0.003 30.0 9.5 72 651-735 49-120 (143)
260 KOG0977 Nuclear envelope prote 48.3 5.8E+02 0.013 30.9 18.1 115 611-732 238-380 (546)
261 PF10168 Nup88: Nuclear pore c 48.1 2.4E+02 0.0053 35.0 13.4 42 674-716 658-706 (717)
262 COG0052 RpsB Ribosomal protein 47.1 18 0.00039 39.1 3.3 44 190-253 147-190 (252)
263 COG5185 HEC1 Protein involved 47.1 3.5E+02 0.0076 32.2 13.5 65 558-635 331-395 (622)
264 PRK00488 pheS phenylalanyl-tRN 46.5 54 0.0012 37.0 7.0 109 513-631 2-128 (339)
265 TIGR03545 conserved hypothetic 45.9 2.1E+02 0.0046 34.4 12.2 66 600-665 160-232 (555)
266 PF07106 TBPIP: Tat binding pr 45.8 1.5E+02 0.0033 29.5 9.5 37 578-617 90-126 (169)
267 PF02601 Exonuc_VII_L: Exonucl 45.4 2.5E+02 0.0053 30.7 11.8 89 224-329 53-145 (319)
268 TIGR03545 conserved hypothetic 45.4 1.1E+02 0.0024 36.7 9.7 34 512-545 169-205 (555)
269 KOG0976 Rho/Rac1-interacting s 45.3 7.6E+02 0.017 31.5 18.4 64 487-550 146-213 (1265)
270 KOG0979 Structural maintenance 45.3 7.1E+02 0.015 32.3 16.6 36 555-590 669-704 (1072)
271 KOG3647 Predicted coiled-coil 45.1 99 0.0021 34.1 8.4 89 433-547 113-205 (338)
272 KOG3156 Uncharacterized membra 44.8 52 0.0011 34.9 6.2 95 580-685 100-197 (220)
273 PF05278 PEARLI-4: Arabidopsis 44.4 2.7E+02 0.0059 30.7 11.6 43 624-666 161-203 (269)
274 KOG4673 Transcription factor T 44.4 7.4E+02 0.016 31.0 16.9 252 436-710 499-758 (961)
275 COG4026 Uncharacterized protei 44.3 30 0.00065 37.0 4.4 40 604-644 139-178 (290)
276 PF05615 THOC7: Tho complex su 44.0 2.3E+02 0.0051 27.3 10.2 73 597-688 32-107 (139)
277 PF00804 Syntaxin: Syntaxin; 44.0 1.8E+02 0.0038 25.6 8.7 43 579-623 19-61 (103)
278 KOG0781 Signal recognition par 43.7 32 0.00069 40.6 4.8 88 197-293 405-508 (587)
279 PRK00286 xseA exodeoxyribonucl 43.5 1.9E+02 0.0041 33.2 11.0 90 223-329 173-262 (438)
280 PRK08476 F0F1 ATP synthase sub 42.8 3.3E+02 0.0072 26.6 11.8 18 695-712 122-139 (141)
281 COG5185 HEC1 Protein involved 42.6 6.7E+02 0.015 30.0 15.8 131 516-692 234-367 (622)
282 COG2144 Selenophosphate synthe 42.3 63 0.0014 36.0 6.5 25 222-246 103-128 (324)
283 PF09730 BicD: Microtubule-ass 42.2 7.9E+02 0.017 30.8 17.5 44 674-718 396-439 (717)
284 COG4618 ArpD ABC-type protease 42.1 59 0.0013 38.8 6.7 79 236-325 482-563 (580)
285 KOG0161 Myosin class II heavy 42.1 1.2E+03 0.025 32.7 26.5 34 650-686 1060-1093(1930)
286 PF15070 GOLGA2L5: Putative go 41.8 5E+02 0.011 31.9 14.5 40 463-505 34-73 (617)
287 COG0419 SbcC ATPase involved i 40.3 8.8E+02 0.019 30.7 22.7 19 435-453 228-246 (908)
288 KOG2203 GTP-binding protein [G 40.1 1.3E+02 0.0029 36.3 9.1 138 463-627 328-475 (772)
289 PF10234 Cluap1: Clusterin-ass 39.8 1.1E+02 0.0023 33.7 7.8 85 434-544 171-259 (267)
290 PF13851 GAS: Growth-arrest sp 39.3 4.7E+02 0.01 27.3 13.5 62 515-591 10-72 (201)
291 COG4245 TerY Uncharacterized p 39.2 41 0.00088 35.3 4.3 53 241-296 2-56 (207)
292 PRK12311 rpsB 30S ribosomal pr 39.2 24 0.00051 39.5 2.9 44 190-253 143-186 (326)
293 COG0796 MurI Glutamate racemas 39.2 92 0.002 34.2 7.2 187 142-403 24-221 (269)
294 COG3883 Uncharacterized protei 38.8 2E+02 0.0043 31.7 9.6 17 711-727 120-136 (265)
295 KOG0946 ER-Golgi vesicle-tethe 38.1 8E+02 0.017 31.3 15.2 116 619-746 661-789 (970)
296 PF03194 LUC7: LUC7 N_terminus 37.7 2.6E+02 0.0057 30.3 10.3 76 584-667 62-138 (254)
297 KOG4603 TBP-1 interacting prot 37.6 3.1E+02 0.0067 28.7 10.1 37 697-733 92-134 (201)
298 COG5570 Uncharacterized small 37.4 33 0.00072 29.0 2.7 13 660-672 16-28 (57)
299 PRK05299 rpsB 30S ribosomal pr 37.2 27 0.00059 37.7 2.9 44 190-253 148-191 (258)
300 KOG1854 Mitochondrial inner me 37.0 8.7E+02 0.019 30.0 15.1 262 436-709 255-548 (657)
301 PF15066 CAGE1: Cancer-associa 36.6 8.1E+02 0.018 29.3 14.3 42 459-500 311-356 (527)
302 smart00503 SynN Syntaxin N-ter 36.2 3E+02 0.0065 25.0 9.2 70 649-734 5-76 (117)
303 TIGR01011 rpsB_bact ribosomal 36.2 33 0.00072 36.3 3.3 43 191-253 147-189 (225)
304 COG0552 FtsY Signal recognitio 36.1 51 0.0011 37.2 4.8 60 197-258 166-235 (340)
305 PLN02760 4-aminobutyrate:pyruv 36.0 54 0.0012 38.5 5.3 66 216-299 269-338 (504)
306 COG3222 Uncharacterized protei 36.0 74 0.0016 33.3 5.6 86 233-352 95-181 (211)
307 COG2082 CobH Precorrin isomera 35.8 1E+02 0.0022 32.7 6.7 70 194-294 124-193 (210)
308 PF05266 DUF724: Protein of un 35.6 4.3E+02 0.0092 27.6 11.1 80 522-643 19-100 (190)
309 PF05879 RHD3: Root hair defec 35.3 9.1E+02 0.02 30.2 15.7 184 433-635 289-487 (742)
310 KOG0964 Structural maintenance 35.2 1.2E+03 0.025 30.6 20.3 76 649-736 953-1041(1200)
311 TIGR00237 xseA exodeoxyribonuc 35.2 2.6E+02 0.0057 32.3 10.5 88 224-328 168-256 (432)
312 COG1160 Predicted GTPases [Gen 34.9 45 0.00097 38.9 4.3 65 195-281 22-86 (444)
313 KOG0971 Microtubule-associated 34.8 1.1E+03 0.025 30.5 23.8 28 700-727 506-533 (1243)
314 PF04799 Fzo_mitofusin: fzo-li 34.8 56 0.0012 33.7 4.4 59 615-686 102-161 (171)
315 PF10186 Atg14: UV radiation r 34.4 5.8E+02 0.013 26.9 13.4 12 560-571 37-48 (302)
316 smart00806 AIP3 Actin interact 34.3 8.4E+02 0.018 28.8 16.5 103 602-708 150-267 (426)
317 smart00787 Spc7 Spc7 kinetocho 33.7 6.5E+02 0.014 28.2 12.8 14 721-734 245-258 (312)
318 PF07028 DUF1319: Protein of u 33.5 3.8E+02 0.0081 26.6 9.6 87 535-668 40-126 (126)
319 PF08549 SWI-SNF_Ssr4: Fungal 33.3 41 0.00088 40.9 3.7 188 385-635 280-469 (669)
320 CHL00067 rps2 ribosomal protei 32.9 37 0.00081 36.0 3.0 43 191-253 153-195 (230)
321 PF04645 DUF603: Protein of un 32.4 1.5E+02 0.0032 30.8 6.9 86 562-686 63-148 (181)
322 PF05911 DUF869: Plant protein 32.2 3.3E+02 0.0072 34.2 11.2 168 438-634 23-226 (769)
323 TIGR00763 lon ATP-dependent pr 32.2 5.5E+02 0.012 32.0 13.2 70 653-731 203-276 (775)
324 COG2433 Uncharacterized conser 32.1 1.8E+02 0.0039 35.4 8.6 87 147-253 204-299 (652)
325 PF10186 Atg14: UV radiation r 32.0 4.2E+02 0.0091 27.9 10.8 32 578-621 17-48 (302)
326 PRK11546 zraP zinc resistance 31.0 2.7E+02 0.0059 28.0 8.4 82 597-690 40-121 (143)
327 PF09728 Taxilin: Myosin-like 30.9 7.9E+02 0.017 27.4 16.0 56 436-503 33-88 (309)
328 PF14357 DUF4404: Domain of un 30.8 1.4E+02 0.0031 27.1 6.0 52 487-542 2-57 (85)
329 TIGR01005 eps_transp_fam exopo 30.7 1E+03 0.022 29.3 15.0 23 649-671 320-342 (754)
330 COG4477 EzrA Negative regulato 30.6 1.1E+03 0.023 28.8 21.4 133 474-617 131-265 (570)
331 PF15070 GOLGA2L5: Putative go 30.6 1.1E+03 0.024 29.0 15.7 64 463-527 2-70 (617)
332 PF07407 Seadorna_VP6: Seadorn 30.5 1.1E+02 0.0024 34.6 6.1 69 554-634 36-104 (420)
333 PF07889 DUF1664: Protein of u 30.2 2.4E+02 0.0051 27.8 7.7 54 617-686 38-92 (126)
334 PF15294 Leu_zip: Leucine zipp 30.1 1.4E+02 0.003 33.0 6.8 95 509-615 127-230 (278)
335 PF13166 AAA_13: AAA domain 29.9 1.1E+03 0.023 28.6 22.2 32 598-629 262-298 (712)
336 KOG3705 Glycoprotein 6-alpha-L 29.8 2.8E+02 0.0061 32.4 9.2 150 460-673 60-209 (580)
337 PRK10884 SH3 domain-containing 29.0 1.6E+02 0.0034 31.0 6.8 12 720-731 151-162 (206)
338 PF05622 HOOK: HOOK protein; 28.8 19 0.00041 43.9 0.0 44 439-484 109-152 (713)
339 KOG4438 Centromere-associated 28.7 7.2E+02 0.016 29.3 12.2 71 518-592 188-259 (446)
340 PRK13454 F0F1 ATP synthase sub 28.6 6.5E+02 0.014 25.7 11.2 19 605-623 77-95 (181)
341 TIGR00634 recN DNA repair prot 28.5 1.1E+03 0.023 28.2 16.5 17 281-297 21-37 (563)
342 PF03904 DUF334: Domain of unk 28.3 6.8E+02 0.015 27.1 11.2 37 556-592 42-82 (230)
343 PF06248 Zw10: Centromere/kine 28.1 6.2E+02 0.013 30.3 12.4 115 603-729 10-133 (593)
344 PF07106 TBPIP: Tat binding pr 28.0 2.3E+02 0.005 28.2 7.6 55 652-709 72-127 (169)
345 COG4477 EzrA Negative regulato 28.0 1E+03 0.022 28.9 13.6 89 433-548 249-340 (570)
346 KOG0018 Structural maintenance 27.9 1.5E+03 0.033 29.8 20.0 84 527-618 292-377 (1141)
347 COG0532 InfB Translation initi 27.7 63 0.0014 38.3 4.0 47 242-288 53-115 (509)
348 PF06705 SF-assemblin: SF-asse 27.7 7.6E+02 0.016 26.2 15.1 17 555-571 39-55 (247)
349 TIGR01612 235kDa-fam reticuloc 27.6 2.1E+03 0.045 31.3 20.7 255 436-728 776-1097(2757)
350 PF07407 Seadorna_VP6: Seadorn 27.4 1.3E+02 0.0028 34.1 6.0 53 649-718 36-88 (420)
351 PRK09174 F0F1 ATP synthase sub 27.2 7.4E+02 0.016 25.9 11.6 19 555-573 78-96 (204)
352 PF12732 YtxH: YtxH-like prote 27.1 2.5E+02 0.0054 24.4 6.7 51 653-716 23-73 (74)
353 COG0486 ThdF Predicted GTPase 26.8 8.5E+02 0.018 28.9 12.6 162 99-288 153-332 (454)
354 PHA03332 membrane glycoprotein 26.7 3.2E+02 0.0069 35.5 9.6 59 605-669 896-954 (1328)
355 PF08580 KAR9: Yeast cortical 26.5 1.3E+03 0.029 28.6 18.8 109 436-574 33-147 (683)
356 PRK05954 precorrin-8X methylmu 26.3 1.6E+02 0.0036 31.0 6.3 56 231-297 134-189 (203)
357 PTZ00440 reticulocyte binding 26.2 2.3E+03 0.049 31.2 21.9 74 651-731 661-737 (2722)
358 PF12709 Kinetocho_Slk19: Cent 26.1 3.1E+02 0.0068 25.5 7.3 66 649-731 1-72 (87)
359 PF05823 Gp-FAR-1: Nematode fa 25.9 2.4E+02 0.0051 28.3 7.1 66 647-714 53-132 (154)
360 KOG0992 Uncharacterized conser 25.9 7.6E+02 0.017 29.8 11.9 177 440-668 306-511 (613)
361 PF14336 DUF4392: Domain of un 25.8 5.7E+02 0.012 28.2 10.7 114 221-359 154-269 (291)
362 PRK15321 putative type III sec 24.6 97 0.0021 29.4 3.8 37 509-545 35-71 (120)
363 PRK08286 cbiC cobalt-precorrin 24.5 1.6E+02 0.0035 31.3 5.9 56 231-297 145-200 (214)
364 cd07624 BAR_SNX7_30 The Bin/Am 24.4 7.6E+02 0.017 25.4 10.8 17 529-545 12-28 (200)
365 COG3937 Uncharacterized conser 24.4 4.7E+02 0.01 25.3 8.3 19 691-709 83-101 (108)
366 PF14662 CCDC155: Coiled-coil 24.4 8.6E+02 0.019 25.7 13.3 41 604-644 40-82 (193)
367 PF10174 Cast: RIM-binding pro 24.0 1.6E+03 0.034 28.6 20.2 241 437-710 133-411 (775)
368 PF02570 CbiC: Precorrin-8X me 23.9 40 0.00086 35.4 1.3 54 230-294 131-184 (198)
369 PF04645 DUF603: Protein of un 23.9 1.8E+02 0.0039 30.2 5.8 38 534-571 115-152 (181)
370 PRK05575 cbiC precorrin-8X met 23.9 1.6E+02 0.0034 31.2 5.7 52 232-294 140-191 (204)
371 COG0216 PrfA Protein chain rel 23.7 3E+02 0.0066 31.4 8.0 39 665-711 65-103 (363)
372 PRK06231 F0F1 ATP synthase sub 23.6 8.5E+02 0.019 25.4 12.3 18 606-623 95-112 (205)
373 COG0541 Ffh Signal recognition 23.4 2.8E+02 0.0061 32.7 8.0 100 197-299 127-261 (451)
374 PRK12677 xylose isomerase; Pro 23.4 5.3E+02 0.012 29.5 10.2 61 230-290 68-137 (384)
375 COG1256 FlgK Flagellar hook-as 23.4 7.1E+02 0.015 30.2 11.5 63 649-732 149-211 (552)
376 PF07851 TMPIT: TMPIT-like pro 23.2 4.7E+02 0.01 29.7 9.5 36 677-712 47-82 (330)
377 PRK07480 putative aminotransfe 23.2 71 0.0015 36.9 3.3 65 217-299 229-297 (456)
378 PRK03011 butyrate kinase; Prov 23.0 2.4E+02 0.0053 31.9 7.4 68 230-298 109-193 (358)
379 PLN02939 transferase, transfer 23.0 1.8E+03 0.039 28.9 25.3 43 502-544 189-232 (977)
380 KOG2150 CCR4-NOT transcription 23.0 2.4E+02 0.0052 34.1 7.4 41 671-727 36-77 (575)
381 COG4741 Predicted secreted end 22.8 1.8E+02 0.0038 29.8 5.5 16 653-668 60-75 (175)
382 COG0419 SbcC ATPase involved i 22.7 1.6E+03 0.036 28.4 25.1 15 649-663 658-672 (908)
383 KOG0780 Signal recognition par 22.7 3.2E+02 0.0069 32.1 8.0 100 197-299 128-262 (483)
384 KOG0978 E3 ubiquitin ligase in 22.6 1.6E+03 0.034 28.2 17.7 50 517-571 279-328 (698)
385 TIGR03007 pepcterm_ChnLen poly 22.6 1.2E+03 0.027 26.9 17.7 41 577-617 221-264 (498)
386 PF11101 DUF2884: Protein of u 22.4 6.6E+02 0.014 26.7 10.0 112 578-711 96-219 (229)
387 PRK11637 AmiB activator; Provi 22.2 1.2E+03 0.026 26.7 23.2 17 435-451 43-59 (428)
388 cd00089 HR1 Protein kinase C-r 22.2 3.4E+02 0.0074 23.4 6.6 31 650-683 7-37 (72)
389 TIGR02707 butyr_kinase butyrat 22.1 2E+02 0.0043 32.5 6.4 67 231-298 108-191 (351)
390 COG1579 Zn-ribbon protein, pos 22.0 4.9E+02 0.011 28.3 9.0 12 672-683 174-185 (239)
391 COG0410 LivF ABC-type branched 22.0 5.5E+02 0.012 28.0 9.3 70 241-319 152-221 (237)
392 PF04548 AIG1: AIG1 family; I 21.9 43 0.00092 34.4 1.1 13 244-256 49-61 (212)
393 COG0480 FusA Translation elong 21.9 70 0.0015 39.4 3.0 90 199-288 11-136 (697)
394 KOG3215 Uncharacterized conser 21.7 1E+03 0.022 25.6 11.9 28 560-593 95-122 (222)
395 TIGR03017 EpsF chain length de 21.7 4.4E+02 0.0095 29.9 9.2 38 598-635 280-317 (444)
396 PRK05782 bifunctional sirohydr 21.7 1.8E+02 0.0039 32.9 6.0 53 233-297 271-323 (335)
397 PF09738 DUF2051: Double stran 21.6 1.1E+03 0.025 26.3 12.0 140 603-752 80-268 (302)
398 PRK06264 cbiC precorrin-8X met 21.5 2.4E+02 0.0052 30.0 6.4 21 276-296 174-194 (210)
399 PRK10869 recombination and rep 21.1 8.7E+02 0.019 29.1 11.8 179 513-714 187-386 (553)
400 PF09325 Vps5: Vps5 C terminal 20.9 3.7E+02 0.0081 27.5 7.7 91 515-623 119-211 (236)
401 PF06810 Phage_GP20: Phage min 20.8 3.7E+02 0.008 27.0 7.4 10 653-662 28-37 (155)
402 COG1579 Zn-ribbon protein, pos 20.8 1.1E+03 0.024 25.6 16.8 20 624-643 91-110 (239)
403 PF09851 SHOCT: Short C-termin 20.7 88 0.0019 23.3 2.2 29 513-541 2-30 (31)
404 PRK05819 deoD purine nucleosid 20.6 2.8E+02 0.0061 29.2 6.9 79 151-255 15-94 (235)
405 PTZ00372 endonuclease 4-like p 20.5 3E+02 0.0065 32.0 7.5 57 218-277 203-263 (413)
406 PRK13505 formate--tetrahydrofo 20.5 3.4E+02 0.0075 32.8 8.1 26 226-251 356-381 (557)
407 PF13758 Prefoldin_3: Prefoldi 20.5 3.9E+02 0.0084 25.4 6.9 31 582-617 13-43 (99)
408 cd01425 RPS2 Ribosomal protein 20.3 93 0.002 32.0 3.1 20 233-252 141-160 (193)
409 COG1830 FbaB DhnA-type fructos 20.3 2.5E+02 0.0054 30.9 6.4 55 218-272 118-177 (265)
410 PF02520 DUF148: Domain of unk 20.3 5.7E+02 0.012 23.8 8.1 47 563-628 18-64 (113)
411 TIGR00763 lon ATP-dependent pr 20.2 1.3E+03 0.027 28.9 13.3 78 469-546 210-299 (775)
412 PF06717 DUF1202: Protein of u 20.1 1.2E+02 0.0025 33.8 3.9 33 668-708 130-162 (308)
413 cd01985 ETF The electron trans 20.0 3.2E+02 0.007 27.1 6.9 46 281-326 36-84 (181)
414 TIGR03007 pepcterm_ChnLen poly 20.0 1.4E+03 0.03 26.5 16.3 61 486-546 222-290 (498)
No 1
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=100.00 E-value=1.1e-204 Score=1715.82 Aligned_cols=759 Identities=76% Similarity=1.136 Sum_probs=751.4
Q ss_pred CCccccccccc---cccchhhhhhhccCcccCcccccccccccccCCCcchHHHHHHhhhccCCCCCCCCCCCCCCcccc
Q 004120 1 MATISHSSLAF---TGASASDLFRSSKSHVNGMPLKALGRARFGSKSRGFAVSAKLRKVKKHDYPWPKDPKDVDPNVKGG 77 (773)
Q Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~~~p~~~~p~~~~~~~~gG 77 (773)
||||||||++| +|++||||||||+||+|||||+||||++|+++||++.|+|+++|+|+|+||||.|| |||++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 77 (762)
T PLN03229 1 MASISHSSVAFGGATGASASDLLRSSSNGVNGVPLKTLGRARFSTRRRDLAVVAKIRKGKKHEYPWPADP---DPNVKGG 77 (762)
T ss_pred CcccccchhhhccccCcchHHHHHhhcCCcCCccchhcccccccccccceEEEeeeccccccCCCCCCCC---CCCcccc
Confidence 99999999999 88999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ccccccccCCCCCCCCCcccccccchHhHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHhhhhhcCCCChhHHhhhcCC
Q 004120 78 VLTHLSHFKPLKEKPKPVTLDFEKPLVGLSKKIMDVRKMANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARH 157 (773)
Q Consensus 78 v~~~l~~~~P~~~~~~~~~LdFEkPIvel~~ki~~l~~la~~~giDlseEIq~LE~KleeL~kdI~~~Lt~weRV~l~Rd 157 (773)
|++||++|+||+++++|.|||||+||.+|+.||++|+.+....++|++++|+.|+.++.++++++|++|||||||+++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~ldfEkpi~ele~ki~el~~~~~~~~~~~~~ei~~Le~k~~~~~~~iy~~LT~werV~~aR~ 157 (762)
T PLN03229 78 VLSYLSHFKPLKEKPKPVTLDFEKPLVDLEKKIVDVRKMANETGLDFSDQIISLESKYQQALKDLYTHLTPIQRVNIARH 157 (762)
T ss_pred hhhHhhccCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhhhhhhheeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHH
Q 004120 158 PNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYY 237 (773)
Q Consensus 158 p~RP~~~d~I~~l~DdF~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~l 237 (773)
|+||+++|||..+||+|+|+||+|+|+||++||||+|||+|+||+|||||+|++|++++.++|||++|+||||++|+|++
T Consensus 158 p~RP~~~Dyi~~i~ddf~EL~Gdr~~~dD~aIVtGlGRIdGrpV~VIAndkg~~tke~~~rnfG~~~peGyRKAlRlmkL 237 (762)
T PLN03229 158 PNRPTFLDHIFNITDKFVELHGDRAGYDDPAIVTGIGTIDGKRYMFIGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYY 237 (762)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCcccCCCCCCeEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeeeeC
Q 004120 238 ADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVAS 317 (773)
Q Consensus 238 Aekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sVis 317 (773)
|++|++|||+|||||||++|.++|.+|++++||+++.+|+.++||+||||+|+|+|||||++++||+|+||++|+|+|+|
T Consensus 238 AekfgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~sVis 317 (762)
T PLN03229 238 ADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYVAS 317 (762)
T ss_pred HHHcCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccCchHHHHHhcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004120 318 PEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHR 397 (773)
Q Consensus 318 PEgaAsIl~rd~~~a~eaAe~lkitA~dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~R 397 (773)
|||||+|+|+|..++++||+++++||.||+++|+||+|||||+||||+||..+...|+.+|..+|.+|..+|+++|+++|
T Consensus 318 PEgaAsILwkd~~~A~eAAe~lkiTa~dL~~lGiiD~IIpEp~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~~~R 397 (762)
T PLN03229 318 PEACAAILWKSAKAAPKAAEKLRITAQELCRLQIADGIIPEPLGGAHADPSWTSQQIKIAINENMDELGKMDTEELLKHR 397 (762)
T ss_pred HHHHHHHHhcCcccHHHHHHHcCCCHHHHHhCCCCeeeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCcccccccccCCCCCCCCChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhHH
Q 004120 398 NLKFRKIGGFQEGIPIDPKKKVNMKKKEGPIASKTSKEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHE 477 (773)
Q Consensus 398 ~~k~r~~G~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (773)
|+|||+||.|.++.|+||+|++|||++|+++ +|+.+|++||++||+||++||+|++.|++++|++|||||++|+|||
T Consensus 398 ~~kfr~~G~~~e~~~~~~~~~~~~~~~~~~~---~~~~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e 474 (762)
T PLN03229 398 MLKFRKIGGFQEGVPVDPERKVNMKKREAVK---TPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLE 474 (762)
T ss_pred HHHHHHhCCcccCCCCChhhhcccchhccCC---CCCccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHH
Q 004120 478 FSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKN 557 (773)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~ 557 (773)
||+|+++|||++||.+||+||||||++||+|||+|++|+++||+||||+|++||||++||+|++|||++++++.+++.++
T Consensus 475 ~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~ 554 (762)
T PLN03229 475 YTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKS 554 (762)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhH
Q 004120 558 KAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSK 637 (773)
Q Consensus 558 ~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk 637 (773)
+.++|++|||++|.|+|++|++++||+++++||.++|+|++.++|++||+||+++|+|++.+|+.|++|+|+++..|..+
T Consensus 555 ~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~ 634 (762)
T PLN03229 555 KAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKK 634 (762)
T ss_pred hhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 004120 638 AKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNS 717 (773)
Q Consensus 638 ~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~s 717 (773)
.+...+++|++++++||++||+||+|+|+++||+|+||+|||+||+||+++|.|||.++|+|||+|+|||+|+|.+||||
T Consensus 635 e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~ 714 (762)
T PLN03229 635 NKDTAEQTPPPNLQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNS 714 (762)
T ss_pred hhcccccCCChhhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhccCCCCCCCCCccCCCCcCCCCcCcccceeee
Q 004120 718 SELKEKHEELMAEISDATKSPGGLDGGVNNEHAKDDSSKYDESRVEIN 765 (773)
Q Consensus 718 s~lk~k~E~Lk~e~a~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 765 (773)
|+||+|||+|+.|++.+.++..++|||+++||+++++++++++++|+|
T Consensus 715 ~~lkek~e~l~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n 762 (762)
T PLN03229 715 SELKEKFEELEAELAAARETAAESNGSLKNDDDKEEDSKEDGSRVEVN 762 (762)
T ss_pred HhHHHHHHHHHHHHHHhhcccccccCCccCCCccccccccccccccCC
Confidence 999999999999999999999999999999999999999999999986
No 2
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=100.00 E-value=2.3e-103 Score=851.24 Aligned_cols=397 Identities=63% Similarity=1.048 Sum_probs=383.4
Q ss_pred ccCcccccccccccccCCCcchHHHHHHhhhc---cCCCCCCC-CCCCCCCccccccccccccCCCCCCCCCcccccccc
Q 004120 27 VNGMPLKALGRARFGSKSRGFAVSAKLRKVKK---HDYPWPKD-PKDVDPNVKGGVLTHLSHFKPLKEKPKPVTLDFEKP 102 (773)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~---~~~p~~~~-p~~~~~~~~gGv~~~l~~~~P~~~~~~~~~LdFEkP 102 (773)
+||++-+ |-+....++-.+.|+++++|+|+ |+||||++ | |||.|||+++||++|+||++++++.+||||+|
T Consensus 7 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~fe~p 81 (431)
T PLN03230 7 KNLVSDR--GAAPRAAQKASVVRPAKIVKGKKRLEHEYPWPEKLP---QGELTTGALKILNRFKPLKNKPKPVTLPFEKP 81 (431)
T ss_pred ccccccc--CCCccccccceeEEEeeeeccccCCCCCCCCcccCC---CCcccccHHHHHHhcCCCCCCCCCCccchhhH
Confidence 4455444 44444444447899999999999 99999988 8 99999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHhhhhhcCCCChhHHhhhcCCCCCCchhhhhhhhhhhheeccCCCC
Q 004120 103 LVGLSKKIMDVRKMANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRA 182 (773)
Q Consensus 103 Ivel~~ki~~l~~la~~~giDlseEIq~LE~KleeL~kdI~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~DdF~EL~gd~~ 182 (773)
|.||++||++|+.+....++|++++|.+|+.++.+++++||++|||||+|+++|||+||+++|||..+||+|+||||||+
T Consensus 82 i~ele~ki~el~~~~~~~~~~~~~ei~~l~~~~~~~~~~i~~~Lt~wq~vq~aRhp~RP~~~d~I~~i~ddf~EL~Gdr~ 161 (431)
T PLN03230 82 IVDLENRIDEVRELANKTGVDFSAQIAELEERYDQVRRELYSRLTPVQRLSVARHPNRPTFLDHVLNMTDKWVELHGDRA 161 (431)
T ss_pred HHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCHHHHHHHhhhHHhhhcCccc
Confidence 99999999999999888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHH
Q 004120 183 GYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEE 262 (773)
Q Consensus 183 ~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe 262 (773)
|+||++||||+|+|+|+||+|||||+++++++++.+||||++|+||+|++|+|++|++|++|||+|||||||++|.++|+
T Consensus 162 ~~dD~aIVtG~grI~GrpV~VIandkg~~~ke~~~rnfG~~~peGyRKAlR~mklAekf~lPIVtLVDTpGA~pG~~AEe 241 (431)
T PLN03230 162 GFDDPAIVCGIGSMEGMSFMFIGHQKGRNTKENIYRNFAMPQPNGYRKALRFMRHAEKFGFPILTFVDTPGAYAGIKAEE 241 (431)
T ss_pred CCCCCCeEEEEEEECCEEEEEEEeccCcccccccccCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeeeeCHHHHHHHhhhhccCchHHHHHhccc
Q 004120 263 LGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKIT 342 (773)
Q Consensus 263 ~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sVisPEgaAsIl~rd~~~a~eaAe~lkit 342 (773)
+||+++||+++++|++++||+||||+|+|+||||+++++||+|+||++|+|+|+|||+||+|+|++..+++++|+.+++|
T Consensus 242 ~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ysVisPEgaAsILwkd~~~A~eAAealkit 321 (431)
T PLN03230 242 LGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYVASPEACAAILWKSAAAAPKAAEALRIT 321 (431)
T ss_pred HhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEecCHHHHHHHHhccccchHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCCCCCccccccc
Q 004120 343 GSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKFRKIGGFQEGIPIDPKKKVNMK 422 (773)
Q Consensus 343 A~dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~R~~k~r~~G~~~~~~~~~~~~~~~~k 422 (773)
|.+|+++|+||+||+||+||||+||..+.+.|+.+|..+|.+|..+++++|+++||+|||+||.|.+..++||++++|||
T Consensus 322 A~dL~~~GiID~II~Ep~ggAh~d~~~~~~~l~~~i~~~l~~L~~~~~~~l~~~R~~kfr~~G~~~~~~~~~~~~~~~~~ 401 (431)
T PLN03230 322 AAELVKLGVVDEIVPEPLGGAHSDPLQASKNIKEVILRHMKELMKMDPEELLQDRAAKFRKIGEFDEFGVVDPHIKRNMK 401 (431)
T ss_pred HHHHHhCCCCeEeccCCCCCcccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCcccccccChHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 004120 423 KKEGPI 428 (773)
Q Consensus 423 ~~~~~~ 428 (773)
+||+++
T Consensus 402 ~~~~~~ 407 (431)
T PLN03230 402 KRDAPV 407 (431)
T ss_pred cccCCC
Confidence 999997
No 3
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=100.00 E-value=1.7e-94 Score=747.71 Aligned_cols=316 Identities=55% Similarity=0.905 Sum_probs=312.4
Q ss_pred CcccccccchHhHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHhhhhhcCCCChhHHhhhcCCCCCCchhhhhhhhhhh
Q 004120 94 PVTLDFEKPLVGLSKKIMDVRKMANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEK 173 (773)
Q Consensus 94 ~~~LdFEkPIvel~~ki~~l~~la~~~giDlseEIq~LE~KleeL~kdI~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~Dd 173 (773)
..+||||+||.+|+.+|++|+.+.....++++++|++||.+...+++++|++|+||||++++|||+|||++|||..+|+|
T Consensus 2 ~~~ldfEkpi~ele~kI~~l~~~~~~~~~~~~~eI~~Le~~~~~~~~~iy~~L~~wq~~q~ARhp~RP~tldyi~~i~~d 81 (317)
T COG0825 2 ANYLDFEKPIAELEAKIDELKALAEENDVDLSDEIERLEKRLAELTKKIYSNLTPWQRVQLARHPDRPYTLDYIELLFTD 81 (317)
T ss_pred CCcchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHhhHHHHhhhhhccCCHHHHHHHhhCCCCCcHHHHHHHHHhH
Confidence 46899999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred heeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 004120 174 FVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 253 (773)
Q Consensus 174 F~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpG 253 (773)
|+||||||.|+||++||+|+|||+|+||+|||||+|++|++++.+||||+.|+|||||+|+|++|++|++||||||||||
T Consensus 82 f~eL~GDR~f~dD~Aivgglar~~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~G 161 (317)
T COG0825 82 FVELHGDRAFADDPAIVGGLARFGGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPG 161 (317)
T ss_pred HHHhcCccccCcChhheeeeeeECCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeeeeCHHHHHHHhhhhccCch
Q 004120 254 AYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKASP 333 (773)
Q Consensus 254 A~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sVisPEgaAsIl~rd~~~a~ 333 (773)
||||.+||++||+++||+|+.+|+.++||+||+|||+|+||||||++++|+|+|++|+||+|+||||||+|||+|..+++
T Consensus 162 AypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySVisPEG~AsILWkD~~ka~ 241 (317)
T COG0825 162 AYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSVISPEGCASILWKDASKAK 241 (317)
T ss_pred CCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeeecChhhhhhhhhcChhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCCC
Q 004120 334 KAAEKLKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKFRKIGGFQE 409 (773)
Q Consensus 334 eaAe~lkitA~dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~R~~k~r~~G~~~~ 409 (773)
+||+.|++||.||+++|+||.|||||.||||+||..+...|+.+|..+|.+|..++.++|+++||+|||+||.|.+
T Consensus 242 eAAe~mkita~dLk~lgiID~II~Ep~ggAhr~~~~~a~~l~~~l~~~l~~L~~l~~~el~~~R~~rf~~~G~~~~ 317 (317)
T COG0825 242 EAAEAMKITAHDLKELGIIDGIIPEPLGGAHRDPEAAAEALKNALLKELHELDKLPEEELLARRYQRFRSIGLFEE 317 (317)
T ss_pred HHHHHcCCCHHHHHhCCCcceeccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999853
No 4
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=100.00 E-value=5.7e-85 Score=693.78 Aligned_cols=317 Identities=53% Similarity=0.878 Sum_probs=311.5
Q ss_pred CCCcccccccchHhHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHhhhhhcCCCChhHHhhhcCCCCCCchhhhhhhhh
Q 004120 92 PKPVTLDFEKPLVGLSKKIMDVRKMANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNIT 171 (773)
Q Consensus 92 ~~~~~LdFEkPIvel~~ki~~l~~la~~~giDlseEIq~LE~KleeL~kdI~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~ 171 (773)
|+..+||||+||.||+.||++|+.++...++|++++|++|+.++.++++++|++|||||+|+++|||+||+++|||..+|
T Consensus 4 ~~~~~l~fe~~i~el~~~i~~l~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~w~~v~~aR~~~Rp~~~d~i~~l~ 83 (322)
T CHL00198 4 RKPHVPDFMKPLAELESQVEELSKLAPKNDKVINNKLKSFQRKLRILKKEIFYSLTPLQRLHLVRQSERPTTLDYIPYIL 83 (322)
T ss_pred ccccccchhhhHHHHHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 44578999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred hhheeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecC
Q 004120 172 EKFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDT 251 (773)
Q Consensus 172 DdF~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDT 251 (773)
|+|+|+||+|+|+||+++|+|+|+|+|+||+|||||+++++++++.+|||+++|++|+|++|+|++|++|++|||+||||
T Consensus 84 d~f~El~gd~~~~dd~avV~Glgri~GrpV~VIa~dkg~~~~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDT 163 (322)
T CHL00198 84 DEWIELHGDRGGSDDPALVGGIGKINGRTIVFLGHQRGRNTKENVLRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDT 163 (322)
T ss_pred HHHHHHccccccCCCCceEEEEEEECCEEEEEEEecCCccchhhhhhcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeeeeCHHHHHHHhhhhccC
Q 004120 252 PGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKA 331 (773)
Q Consensus 252 pGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sVisPEgaAsIl~rd~~~ 331 (773)
|||++|.++|++|++++|++++.+|+.++||+||||+|+|+|||||+++++|+|+||++|+|+|+||||||+|+|+|..+
T Consensus 164 pGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~sVisPEg~a~Il~~d~~~ 243 (322)
T CHL00198 164 PGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTVATPEACAAILWKDSKK 243 (322)
T ss_pred CCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEecCHHHHHHHHhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCC
Q 004120 332 SPKAAEKLKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKFRKIGGFQ 408 (773)
Q Consensus 332 a~eaAe~lkitA~dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~R~~k~r~~G~~~ 408 (773)
+++||+.+++||.||+++|+||+|||||+||||+||..+...|+.+|..+|.+|..+|+++|+++||+|||+||.|.
T Consensus 244 a~~aA~~~~ita~dL~~~giiD~ii~Ep~ggah~~~~~~~~~l~~~~~~~l~~l~~~~~~~l~~~R~~k~~~~g~~~ 320 (322)
T CHL00198 244 SLDAAEALKITSEDLKVLGIIDEIIPEPIGGAQADPASASKILKKKLIRQLDFLKILSPSELKAHRYEKFRKLGAFY 320 (322)
T ss_pred HHHHHHHcCCCHHHHHhCCCCeEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875
No 5
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=100.00 E-value=1.7e-83 Score=682.93 Aligned_cols=316 Identities=54% Similarity=0.880 Sum_probs=310.6
Q ss_pred CcccccccchHhHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHhhhhhcCCCChhHHhhhcCCCCCCchhhhhhhhhhh
Q 004120 94 PVTLDFEKPLVGLSKKIMDVRKMANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEK 173 (773)
Q Consensus 94 ~~~LdFEkPIvel~~ki~~l~~la~~~giDlseEIq~LE~KleeL~kdI~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~Dd 173 (773)
..+||||+||.||+.||++|+.++...++|++++|.+|+.+++++++++|++|||||+|+++|||+|||.+|||..+||+
T Consensus 3 ~~~l~fe~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~w~~v~~ar~~~Rp~~~d~I~~l~d~ 82 (319)
T PRK05724 3 LNYLDFEKPIAELEAKIEELRAVAEDSDVDLSEEIERLEKKLEELTKKIYSNLTPWQKVQLARHPQRPYTLDYIELLFTD 82 (319)
T ss_pred cchhhhhhHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcCCCHHHhhhcccCCCCCCHHHHHHHHhhH
Confidence 47899999999999999999999887889999999999999999999999999999999999999999999999999999
Q ss_pred heeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 004120 174 FVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 253 (773)
Q Consensus 174 F~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpG 253 (773)
|+||||+|.|+||+++|||+|||+|+||+|||||+++++++++.+|||+++|++|+|++|+|++|++|++|||+||||||
T Consensus 83 f~El~gdr~~~dd~aiV~G~ari~GrpV~VIa~d~g~~~~e~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpG 162 (319)
T PRK05724 83 FTELHGDRAFADDKAIVGGLARLNGRPVMVIGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPG 162 (319)
T ss_pred HHHHcCCcCCCCCCceEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeeeeCHHHHHHHhhhhccCch
Q 004120 254 AYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKASP 333 (773)
Q Consensus 254 A~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sVisPEgaAsIl~rd~~~a~ 333 (773)
|++|.++|++|++++||+++.+|+.++||+||||+|+|+||||+++++||+|+|||+|+|+|+|||||++|+|++..+++
T Consensus 163 a~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~svisPEg~a~Il~~~~~~a~ 242 (319)
T PRK05724 163 AYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYSVISPEGCASILWKDASKAP 242 (319)
T ss_pred CCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEeecCHHHHHHHHhcCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCCC
Q 004120 334 KAAEKLKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKFRKIGGFQE 409 (773)
Q Consensus 334 eaAe~lkitA~dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~R~~k~r~~G~~~~ 409 (773)
++|+.+++|+.+|+++|+||+||+||+||||+||..+...|+.+|..+|.+|..+|+++|+++||+|||+||.|.+
T Consensus 243 ~aae~~~ita~~l~~~g~iD~II~Ep~gga~~~~~~~~~~l~~~i~~~l~~l~~~~~~~l~~~R~~k~~~~g~~~~ 318 (319)
T PRK05724 243 EAAEAMKITAQDLKELGIIDEIIPEPLGGAHRDPEAAAAALKEALLEALAELKGLSPEELLERRYEKFMSIGRFLE 318 (319)
T ss_pred HHHHHcCCCHHHHHHCCCceEeccCCCCCccCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998754
No 6
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=100.00 E-value=4.1e-82 Score=671.57 Aligned_cols=314 Identities=50% Similarity=0.816 Sum_probs=308.7
Q ss_pred CcccccccchHhHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHhhhhhcCCCChhHHhhhcCCCCCCchhhhhhhhhhh
Q 004120 94 PVTLDFEKPLVGLSKKIMDVRKMANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEK 173 (773)
Q Consensus 94 ~~~LdFEkPIvel~~ki~~l~~la~~~giDlseEIq~LE~KleeL~kdI~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~Dd 173 (773)
..+||||+||.+|++||++|+.+....++|++++|..|+.++.++.+++|++|||||+|+++|||+|||..+||..+||+
T Consensus 3 ~~~~~fe~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~w~~v~~ar~~~Rp~~~d~i~~l~d~ 82 (316)
T TIGR00513 3 ANYLDFEKPIAELEAKIESLRARSRDEDVDLSEEIERLEKRSVELTKKIFSNLGAWQRLQLARHPDRPYTLDYIELIFDD 82 (316)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCchHHHHHHHhhh
Confidence 35799999999999999999999888889999999999999999999999999999999999999999988999999999
Q ss_pred heeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 004120 174 FVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 253 (773)
Q Consensus 174 F~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpG 253 (773)
|+||||+|+|+||+++|||+|+|+|+||+|||||+++++++++.+|||+++|++|+|++|+|++|++|++|||+|+||||
T Consensus 83 f~EL~gd~~~~dd~aiVtG~ari~GrpV~VIa~d~g~~~~e~~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpG 162 (316)
T TIGR00513 83 FFELAGDRAYADDKAIVGGIARLDGRPVVVIGHQKGRDTKEKLRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPG 162 (316)
T ss_pred heeeccccCCCCCCceEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeeeeCHHHHHHHhhhhccCch
Q 004120 254 AYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKASP 333 (773)
Q Consensus 254 A~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sVisPEgaAsIl~rd~~~a~ 333 (773)
|++|.++|++|++++||+++.+|+.++||+||||+|+|+|||||++++||+++||++|+|+|+|||||++|+|++..+++
T Consensus 163 a~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~sVisPEg~a~Il~kd~~~a~ 242 (316)
T TIGR00513 163 AYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYSVISPEGCAAILWKDASKAP 242 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecCceEEecCHHHHHHHhccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCC
Q 004120 334 KAAEKLKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKFRKIGGF 407 (773)
Q Consensus 334 eaAe~lkitA~dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~R~~k~r~~G~~ 407 (773)
++|+.+++||.+|+++|+||+|||||.||||+||..+...|+.+|..+|.+|..+|+++|+++||+|||+||.|
T Consensus 243 ~aae~~~~ta~~l~~~G~iD~II~ep~~ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~R~~k~~~~g~~ 316 (316)
T TIGR00513 243 KAAEAMKITAPDLKELGLIDSIIPEPLGGAHRNPLAAAASLKEQLLADLATLDQLSTEELKNRRYQKLMSLGYF 316 (316)
T ss_pred HHHHHccCCHHHHHHCCCCeEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
No 7
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=100.00 E-value=3.4e-62 Score=508.30 Aligned_cols=254 Identities=48% Similarity=0.718 Sum_probs=248.0
Q ss_pred ChhHHhhhcCCCCCCchhhhhhhhhhhheeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHH
Q 004120 147 TPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPH 226 (773)
Q Consensus 147 t~weRV~l~Rdp~RP~~~d~I~~l~DdF~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~pe 226 (773)
+||++|+++|+++||+++|+|..+||+|+|+||++.+++|.++|||+|+|+|+||+|||||++++++++..+|||+++|+
T Consensus 3 ~~~~~v~~ar~~~r~~are~I~~L~D~F~El~g~~~~~~d~~vItG~gri~Gr~V~via~~~~~~~~d~~~~~~G~~~~~ 82 (256)
T PRK12319 3 DVARILKEARDQGRLTTLDYATLIFDDFMELHGDRHFRDDGAVVGGIGYLAGQPVTVVGIQKGKNLQDNLKRNFGQPHPE 82 (256)
T ss_pred CHHHHHHHhccCCCCCHHHHHHHhCchheeccCCCCCCCCCcEEEEEEEECCEEEEEEEeccCCccccceeeeCCCCCHH
Confidence 68999999999999999999999999999999988888889999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceee
Q 004120 227 GYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLL 306 (773)
Q Consensus 227 g~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vl 306 (773)
+|+|++|+|++|++|++|||+|+||||+++|.++|+.|+++++++++.+|++++||+||||+|+|+|||||+++++|+++
T Consensus 83 g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~ 162 (256)
T PRK12319 83 GYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVW 162 (256)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCeeeeeCHHHHHHHhhhhccCchHHHHHhcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHc
Q 004120 307 MLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELG 386 (773)
Q Consensus 307 m~e~A~~sVisPEgaAsIl~rd~~~a~eaAe~lkitA~dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~ 386 (773)
||++++|+|++||+|++|+|++..+++++|+.+++|+.+|+++|+||+||+|| |++|..+...|+.+|..+|.+|.
T Consensus 163 m~~~a~~~v~~pe~~a~il~~~~~~a~~aa~~~~~~a~~l~~~g~iD~ii~e~----~~~~~~~~~~~~~~~~~~l~~l~ 238 (256)
T PRK12319 163 MLENTMYAVLSPEGFASILWKDGSRATEAAELMKITAGELLEMGVVDKVIPEH----GYFSSEIIDMIKKNLIEELAQLS 238 (256)
T ss_pred EecCceEEEcCHHHHHHHHhcCcccHHHHHHHcCCCHHHHHHCCCCcEecCCC----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997 47899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 004120 387 KMDTQELLKHRNLKFRKI 404 (773)
Q Consensus 387 ~l~~~~l~~~R~~k~r~~ 404 (773)
.+|+++|+++||+|||+|
T Consensus 239 ~~~~~~~~~~r~~~~~~~ 256 (256)
T PRK12319 239 QKPLEQLLEERYQRFRKY 256 (256)
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999999986
No 8
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=100.00 E-value=2.5e-51 Score=466.73 Aligned_cols=251 Identities=24% Similarity=0.328 Sum_probs=236.3
Q ss_pred HHHHH--HcCcHHHHHHHHHHhccC-CCCCCCCChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhh-hhccccccc-
Q 004120 479 SEAAK--AMGMQEKFATLRAEFSKG-NSRDQLMDPILMDKITELKNEFNQGLASAPNYASLKYKLDMLK-EFSNAKSLL- 553 (773)
Q Consensus 479 ~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~k-e~s~~~~~~- 553 (773)
++|.+ .+||+++|++||+||+|| +|++|++||+|+++|+|||+||||+||+||||.+||+|++||+ |||++++.-
T Consensus 424 ~~~~~~~~~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~ 503 (762)
T PLN03229 424 REAVKTPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQ 503 (762)
T ss_pred hccCCCCCccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccc
Confidence 44555 899999999999999999 9999999999999999999999999999999999999999999 999997521
Q ss_pred ----hhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHh----hcCCCCCCCCChHHHHHHHH------HHHHHHHH
Q 004120 554 ----DSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQ----DSGASSFSDLEDDLKEKLVE------TKKEIESE 619 (773)
Q Consensus 554 ----~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~----ka~~s~~~~l~~~Lkeki~k------~k~Ef~~~ 619 (773)
.+.+++++||+|+||+|++|++.|+||+||++||+++. ..|+|+...|+++|++||.+ +|++|+.+
T Consensus 504 ~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~ 583 (762)
T PLN03229 504 LMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEAL 583 (762)
T ss_pred cccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 36778999999999999999999999999999999998 78888999999999999999 99999999
Q ss_pred HHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHH
Q 004120 620 LIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCK 699 (773)
Q Consensus 620 l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p~~~~k~K 699 (773)
+++|++ +| ....+ .+++++++||+++|+||+++|++|++|++|+.+ +.||.||+++|.|||+++++|
T Consensus 584 ~aev~~-~g----------~s~~~-~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~-~~~k~e~a~~~~~p~~~~k~K 650 (762)
T PLN03229 584 KAEVAS-SG----------ASSGD-ELDDDLKEKVEKMKKEIELELAGVLKSMGLEVI-GVTKKNKDTAEQTPPPNLQEK 650 (762)
T ss_pred HHHHHh-cC----------ccccC-CCCHHHHHHHHHHHHHHHHHHHHHHhccCchhh-hhhhhhhcccccCCChhhHHH
Confidence 999999 77 22333 678899999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHhhccCCCCCCC
Q 004120 700 IQALEQQIKQRLSEAVNSSELKEKHEELMAEISDATKSPGGLD 742 (773)
Q Consensus 700 Ie~l~~~I~~~ie~a~~ss~lk~k~E~Lk~e~a~a~~~~~~~~ 742 (773)
||+|||||+|+|++|||||+||+|||+||+|+++||++||..+
T Consensus 651 Ie~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~ 693 (762)
T PLN03229 651 IESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTE 693 (762)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcch
Confidence 9999999999999999999999999999999999999999874
No 9
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=100.00 E-value=5e-40 Score=370.97 Aligned_cols=300 Identities=21% Similarity=0.246 Sum_probs=230.7
Q ss_pred chHHHHHHhhhccCCCCC---CCCCCCCCCccccc-----cccccccCCCCCCCCC-cccccccchHhHHHHH------H
Q 004120 47 FAVSAKLRKVKKHDYPWP---KDPKDVDPNVKGGV-----LTHLSHFKPLKEKPKP-VTLDFEKPLVGLSKKI------M 111 (773)
Q Consensus 47 ~~v~~~~~~~k~~~~p~~---~~p~~~~~~~~gGv-----~~~l~~~~P~~~~~~~-~~LdFEkPIvel~~ki------~ 111 (773)
.++....... .+..|++ ..| ++||+ ++|++++.| . .++.|.+|.+ ++.-+ +
T Consensus 142 ~~~~~~~~~~-s~~iP~Isvv~G~------~~GG~a~~~al~D~vim~~------~~a~i~~aGP~v-v~~~~Ge~v~~e 207 (512)
T TIGR01117 142 GDIFYRNTIA-SGVVPQISAIMGP------CAGGAVYSPALTDFIYMVD------NTSQMFITGPQV-IKTVTGEEVTAE 207 (512)
T ss_pred HHHHHHHHHH-cCCCcEEEEEecC------CCcHHHHHHHhcCceEEec------cceEEEecChHH-HHhhcCcccchh
Confidence 4555444333 3569999 778 89998 399999998 5 5799999988 11111 1
Q ss_pred HH---HhhhhhcC-C-----ChHHHHHHHHHHHHHhhhhhcCCC------Chh----HH--hhhcCCCCCCc-hhhhhhh
Q 004120 112 DV---RKMANDTG-L-----DFSDQIVSLENKYQQALKDLYTHL------TPI----QR--VNIARHPNRPT-FLDHVFN 169 (773)
Q Consensus 112 ~l---~~la~~~g-i-----DlseEIq~LE~KleeL~kdI~~~L------t~w----eR--V~l~Rdp~RP~-~~d~I~~ 169 (773)
+| .-....+| . |-.+-+..++.-+.-+-....... ++. +. -.+|+++++|| ++++|..
T Consensus 208 ~lGGa~~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp~~~~~~~p~~~~~~~~~~~~~~l~~~iP~~~~~~~d~r~~i~~ 287 (512)
T TIGR01117 208 QLGGAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLPSNNMEKAPLVKTGDDPTRETPELYDLLPDNPNKPYDMRDVITA 287 (512)
T ss_pred hcchHHHhccccceeEEecCChHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCccccchhhhhhCCCCCCCCCCHHHHHHH
Confidence 11 00000011 0 111122233332222211100000 001 11 24788899999 9999999
Q ss_pred hhh--hheeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEE
Q 004120 170 ITE--KFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVT 247 (773)
Q Consensus 170 l~D--dF~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVt 247 (773)
++| +|+|+++.|+ +++|||+|||+|+||+||+||++ +++|++++.+++|++|+|++|+++++|||+
T Consensus 288 l~D~~sf~El~~~~g----~~vVtG~gri~G~~V~vvAnd~~--------~~~G~~~~~~~~K~~r~i~~a~~~~lPlV~ 355 (512)
T TIGR01117 288 IVDNGDYLEVQPYYA----PNIITCFARINGQSVGIIANQPK--------VMAGCLDIDSSDKIARFIRFCDAFNIPIVT 355 (512)
T ss_pred hCCCCceEEeeccCC----CcEEEEEEEECCEEEEEEEeccc--------cccCCCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 999 8999998876 89999999999999999999997 899999999999999999999999999999
Q ss_pred EecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccc----cceeeeecCCeeeeeCHHHHHH
Q 004120 248 FIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGC----ANKLLMLENAVFYVASPEACAA 323 (773)
Q Consensus 248 LIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~----aD~Vlm~e~A~~sVisPEgaAs 323 (773)
|+|||||.+|..+|..|+..++++++.+++.++||+||||+|+|+|||+++|++ +|+++|||+|+++||+||+++.
T Consensus 356 lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v~~pe~a~~ 435 (512)
T TIGR01117 356 FVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAVMGPAGAAN 435 (512)
T ss_pred EEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEeecCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999975 9999999999999999999999
Q ss_pred HhhhhccCc---hHHHHHh--------cccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHH
Q 004120 324 ILWKSAKAS---PKAAEKL--------KITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINES 381 (773)
Q Consensus 324 Il~rd~~~a---~eaAe~l--------kitA~dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~ 381 (773)
|+|++.... ++.+... ..++..+.+.|+||+|| ||.+||.+|..+|...
T Consensus 436 i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI---------~P~~tR~~l~~~l~~~ 495 (512)
T TIGR01117 436 IIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVI---------EPKQTRPKIVNALAML 495 (512)
T ss_pred HHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeE---------ChHHHHHHHHHHHHHH
Confidence 999876432 2211111 23577889999999999 9999999999999764
No 10
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=100.00 E-value=7.6e-41 Score=376.31 Aligned_cols=304 Identities=22% Similarity=0.310 Sum_probs=226.0
Q ss_pred cchHHHHHHhhhccCCCCC---CCCCCCCCCccccc-----cccccccCCCCCCCCC-cccccccchHhHHHHH------
Q 004120 46 GFAVSAKLRKVKKHDYPWP---KDPKDVDPNVKGGV-----LTHLSHFKPLKEKPKP-VTLDFEKPLVGLSKKI------ 110 (773)
Q Consensus 46 ~~~v~~~~~~~k~~~~p~~---~~p~~~~~~~~gGv-----~~~l~~~~P~~~~~~~-~~LdFEkPIvel~~ki------ 110 (773)
+.++..++.+++. +.|++ +.| ++||. ++|.++..+ . ..+.|-+|.+ ++.-+
T Consensus 118 ~g~i~~~~~~~~~-~iP~I~vv~G~------~~Gg~A~~~~~~d~~i~~~------~~a~i~l~GP~v-v~~~~Ge~~~~ 183 (493)
T PF01039_consen 118 MGRIFRAIARLSG-GIPQISVVTGP------CTGGGAYLAALSDFVIMVK------GTARIFLAGPRV-VESATGEEVDS 183 (493)
T ss_dssp HHHHHHHHHHHHT-TS-EEEEEESE------EEGGGGHHHHHSSEEEEET------TTCEEESSTHHH-HHHHHSSCTSH
T ss_pred hHHHHHHHHHHhc-CCCeEEEEccc------cccchhhcccccCccccCc------cceEEEeccccc-cccccCccccc
Confidence 5678888888888 99999 778 88865 388888877 5 8899999987 12111
Q ss_pred HHHHh---hhhhcC-CCh--HH---HHHHHHHHHHHhh---hh------hcCCCChhHH-----hhhcCCCCCCc-hhhh
Q 004120 111 MDVRK---MANDTG-LDF--SD---QIVSLENKYQQAL---KD------LYTHLTPIQR-----VNIARHPNRPT-FLDH 166 (773)
Q Consensus 111 ~~l~~---la~~~g-iDl--se---EIq~LE~KleeL~---kd------I~~~Lt~weR-----V~l~Rdp~RP~-~~d~ 166 (773)
++|-. ....+| .|+ .+ -++.+..-+.-+- .. ....-++++| -.+|.++.+|| ++++
T Consensus 184 ~~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~lp~~~~~~~~~~p~~~~~d~~~~~~~l~~~~P~~~~~~yD~r~i 263 (493)
T PF01039_consen 184 EELGGADVHAAKSGVVDYVVDDEEDALAQIRRLLSYLPSPASNNFEDPPRVPTSDPPDRDEELDSIIPDDRRRPYDMRDI 263 (493)
T ss_dssp HHHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS-SSTSSTTSS--BSSSSSGSSSCGGGHGCS-SSTTS---HHHH
T ss_pred hhhhhhhhhcccCCCceEEEechHHHHHHHHHhhcccccccccccCCCcccccCCCcccccccccccccccCCCCCccee
Confidence 11110 111222 221 12 2333333333222 11 0001123444 34566678999 9999
Q ss_pred hhhhhh--hheeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCc
Q 004120 167 VFNITE--KFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFP 244 (773)
Q Consensus 167 I~~l~D--dF~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LP 244 (773)
|..++| +|+|++++|+ +++|||||||+|+||+|||||++ +++|++++++++|++||+++|++|++|
T Consensus 264 i~~i~D~~~f~E~~~~~g----~~~vtg~arl~G~pVGiian~~~--------~~~G~~~~~~a~K~arfi~lcd~~~iP 331 (493)
T PF01039_consen 264 IARIVDDGSFFELKPGYG----KNIVTGFARLGGRPVGIIANNPR--------QRAGALDPDGARKAARFIRLCDAFNIP 331 (493)
T ss_dssp HHHHSGGGBEEEESTTSS----TTEEEEEEEETTEEEEEEEE-TT--------CGGGEB-HHHHHHHHHHHHHHHHTT--
T ss_pred eEecccCCCceecccccc----CCeEEeeeeeCCcceEEEEeccc--------cccccCChHHHHHHHHHHHHHHhhCCc
Confidence 999999 6999999988 89999999999999999999997 789999999999999999999999999
Q ss_pred EEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhcccc----ceeeeecCCeeeeeCHHH
Q 004120 245 IVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCA----NKLLMLENAVFYVASPEA 320 (773)
Q Consensus 245 IVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~a----D~Vlm~e~A~~sVisPEg 320 (773)
||+|+|||||++|.++|..|+.+++|+++.++++++||+|+||+|+++|||+++|+.. |+++|||+|+++||+||+
T Consensus 332 lv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm~~e~ 411 (493)
T PF01039_consen 332 LVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVMGPEG 411 (493)
T ss_dssp EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS-HHH
T ss_pred eEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeecChhh
Confidence 9999999999999999999999999999999999999999999999999999999875 999999999999999999
Q ss_pred HHHHhhhhccCchH-----H----H----HH--hcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 004120 321 CAAILWKSAKASPK-----A----A----EK--LKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDE 384 (773)
Q Consensus 321 aAsIl~rd~~~a~e-----a----A----e~--lkitA~dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~e 384 (773)
++.|+|++...+.+ . + +. ...++......+++|+|| +|.+||.+|..+|...++.
T Consensus 412 a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii---------~p~~tR~~l~~~l~~~~~~ 481 (493)
T PF01039_consen 412 AASILYRDELEAAEAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDII---------DPAETRKVLIAALEMLWQK 481 (493)
T ss_dssp HHHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEES---------SGGGHHHHHHHHHHHHTTS
T ss_pred hheeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCcc---------CHHHHHHHHHHHHHHHHhC
Confidence 99999987654321 1 1 11 124667788899999999 9999999999999866544
No 11
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=100.00 E-value=6e-41 Score=320.06 Aligned_cols=145 Identities=56% Similarity=0.934 Sum_probs=109.1
Q ss_pred cccccccchHhHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHhhhhhcCCCChhHHhhhcCCCCCCchhhhhhhhhhhh
Q 004120 95 VTLDFEKPLVGLSKKIMDVRKMANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKF 174 (773)
Q Consensus 95 ~~LdFEkPIvel~~ki~~l~~la~~~giDlseEIq~LE~KleeL~kdI~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~DdF 174 (773)
++||||+||.+|+.+|++|+..+...+.+++++|+.|++++.++.+++|++|||||||+++|||+||++.|||.++|++|
T Consensus 1 ~~LdfEk~I~ele~kI~eL~~~~~~~~~d~~~ei~~Le~k~~~l~~eiy~~lt~w~~V~~aRhp~Rp~~~dyI~~l~~df 80 (145)
T PF03255_consen 1 MYLDFEKPIKELEEKIEELKKLAEEGGIDLSDEIASLEEKLEKLRKEIYSNLTPWQRVQLARHPDRPTALDYIENLFDDF 80 (145)
T ss_dssp ---CCCHHHHHCCCCCC--------------TCHHHHHHHHHCCCCHHHHT--HHHHHHHHTBTTS--HHHHHHHH-EEE
T ss_pred CCCchhhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhhCCCCCCHHHHHHHHhCcC
Confidence 47999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhh
Q 004120 175 VELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYAD 239 (773)
Q Consensus 175 ~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAe 239 (773)
+||||||.|+||++||+|+|+|+|+||+|||+++|++++|++.+||||++|+|||||+|+|++|+
T Consensus 81 ~ElhGDR~~~dD~AivgG~a~~~g~~V~vig~~KG~~~~e~~~rNFGm~~PeGYRKAlRlmk~Ae 145 (145)
T PF03255_consen 81 IELHGDRLFGDDPAIVGGIARFDGQPVTVIGQQKGRDTKENIKRNFGMPHPEGYRKALRLMKQAE 145 (145)
T ss_dssp EE----SSS---TTEEEEEEEETTEEEEEEEE---SSCCHHHHTGGG---HHHHHHHHHHHHHHH
T ss_pred eEecCCccCCcCccceeeeEEECCEEEEEEEEecCcCHHHHHHHcCCCCCcchHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999996
No 12
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=100.00 E-value=2.3e-38 Score=360.28 Aligned_cols=297 Identities=18% Similarity=0.212 Sum_probs=223.2
Q ss_pred chHHHHHHhhhccCCCCC---CCCCCCCCCcccccc-----ccccccCCCCCCCCCcccccccchHhHHHHHHHHHhhhh
Q 004120 47 FAVSAKLRKVKKHDYPWP---KDPKDVDPNVKGGVL-----THLSHFKPLKEKPKPVTLDFEKPLVGLSKKIMDVRKMAN 118 (773)
Q Consensus 47 ~~v~~~~~~~k~~~~p~~---~~p~~~~~~~~gGv~-----~~l~~~~P~~~~~~~~~LdFEkPIvel~~ki~~l~~la~ 118 (773)
.++..++.+++..+.||+ ..| .+.||++ .+++..+| ..++-|.+|.+ ++.-+.+--..++
T Consensus 192 g~if~~~~~ls~~~VP~Isvv~G~-----~~gGgAy~~a~~D~vim~~~------~a~i~~aGP~v-V~~~~Ge~v~~ee 259 (569)
T PLN02820 192 GRIFYNQARMSSAGIPQIALVLGS-----CTAGGAYVPAMADESVIVKG------NGTIFLAGPPL-VKAATGEEVSAED 259 (569)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCC-----CChHHHHHHHhCCceEEecC------CcEEEecCHHH-HHhhcCcccCHHH
Confidence 467777888888999999 444 3666664 55666787 78899999976 1111110000000
Q ss_pred h---------cC-CC--hHHHH---HHHHHHHHHhhhhh--------cCCC----Ch---h--HHhhhcCCCCCCc-hhh
Q 004120 119 D---------TG-LD--FSDQI---VSLENKYQQALKDL--------YTHL----TP---I--QRVNIARHPNRPT-FLD 165 (773)
Q Consensus 119 ~---------~g-iD--lseEI---q~LE~KleeL~kdI--------~~~L----t~---w--eRV~l~Rdp~RP~-~~d 165 (773)
. +| .| ..++. ...+..+.-+-... .... +| . -.-.++.++.+|| +++
T Consensus 260 LGGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ivP~~~~~~yD~r~ 339 (569)
T PLN02820 260 LGGADVHCKVSGVSDHFAQDELHALAIGRNIVKNLHLAAKQGMENTLGSKNPEYKEPLYDVKELRGIVPADHKQSFDVRS 339 (569)
T ss_pred hCCHHHhcccccccccccCchHHHHHHHHHHHHhcCcCCcccccccccCCCCCCcCcccChhhHhhccCCCCCCCCCHHH
Confidence 0 11 11 01221 22222222221000 0000 01 1 1234677888899 999
Q ss_pred hhhhhhh--hheeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCC
Q 004120 166 HVFNITE--KFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGF 243 (773)
Q Consensus 166 ~I~~l~D--dF~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~L 243 (773)
+|..++| +|+|++..|+ +++|||+|||+|+||+||||+ |++.+++++|++|||++|++|++
T Consensus 340 vi~~ivD~~sf~E~~~~~g----~~iVtG~aRi~G~~VgvvAn~-------------g~l~~~~a~Kaarfi~lc~~~~i 402 (569)
T PLN02820 340 VIARIVDGSEFDEFKKNYG----TTLVTGFARIYGQPVGIIGNN-------------GILFTESALKGAHFIELCAQRGI 402 (569)
T ss_pred HHHHhcCCceeEEecccCC----CcEEEEEEEECCEEEEEEEEC-------------CccCHHHHHHHHHHHHHHHhcCC
Confidence 9999999 6999999998 999999999999999999997 56899999999999999999999
Q ss_pred cEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhcc----ccceeeeecCCeeeeeCHH
Q 004120 244 PIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIG----CANKLLMLENAVFYVASPE 319 (773)
Q Consensus 244 PIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g----~aD~Vlm~e~A~~sVisPE 319 (773)
|||+|+|||||++|.++|..|+++++|+++.+++.++||+||||+|++||||+|+|+ .+|+++|||+|+++||+||
T Consensus 403 Plv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~vmg~e 482 (569)
T PLN02820 403 PLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIGVMGGA 482 (569)
T ss_pred CEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEEecCHH
Confidence 999999999999999999999999999999999999999999999999999999997 4899999999999999999
Q ss_pred HHHHHhhhhccC----------chHHH-------HHh--cccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHH
Q 004120 320 ACAAILWKSAKA----------SPKAA-------EKL--KITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINE 380 (773)
Q Consensus 320 gaAsIl~rd~~~----------a~eaA-------e~l--kitA~dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~ 380 (773)
+++.|+|+.... .++.+ +.+ ..++....+.|+||+|| ||.+||.+|..+|..
T Consensus 483 ~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VI---------dP~dTR~~l~~~l~~ 553 (569)
T PLN02820 483 QAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVI---------DPADTRRVLGLCLSA 553 (569)
T ss_pred HHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCccc---------CHHHHHHHHHHHHHH
Confidence 999999985331 11111 111 23445566789999999 999999999999976
Q ss_pred H
Q 004120 381 S 381 (773)
Q Consensus 381 ~ 381 (773)
.
T Consensus 554 ~ 554 (569)
T PLN02820 554 A 554 (569)
T ss_pred h
Confidence 4
No 13
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=100.00 E-value=7.3e-39 Score=330.72 Aligned_cols=182 Identities=22% Similarity=0.295 Sum_probs=160.2
Q ss_pred hhhhhhhhhhhheeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhh-c
Q 004120 163 FLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADH-H 241 (773)
Q Consensus 163 ~~d~I~~l~DdF~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAek-f 241 (773)
.++||..+||+|.+++++ +++|||+|||+|+||+||||+++ +++|+ +++++++.+++..|+. |
T Consensus 2 ~~~~l~~l~d~~~~~e~~------~~vv~G~arl~G~~V~vIa~~~~--------~~~g~--~~~~k~A~~v~~~~d~~f 65 (238)
T TIGR03134 2 GRDWLAALFPNGHEVAGD------PGVLVGSAELAGGKVTVIGVVPD--------AEVGL--DEALALAQAVLDVIEADD 65 (238)
T ss_pred HHHHHHHHcCCCcEEecC------CcEEEEEEEECCEEEEEEEECCC--------CcCCh--HHHHHHHHHHHHHHHhcC
Confidence 478999999988888865 38999999999999999999986 35555 5666666655566764 9
Q ss_pred CCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHh---CCCCcEEEEEcCCCccchhhhccc-cceeeeecCCeeeeeC
Q 004120 242 GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMF---GLKVPIISIVIGEGGSGGALAIGC-ANKLLMLENAVFYVAS 317 (773)
Q Consensus 242 ~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams---~l~VP~ISVViGeg~GGGAlA~g~-aD~Vlm~e~A~~sVis 317 (773)
++|||+|||||||++|.++|+.|+.+++|+++.+++ .++||+||||+|+|+|||+++|++ +|+++|||+|+|+||+
T Consensus 66 ~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~vm~ 145 (238)
T TIGR03134 66 KRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHVMD 145 (238)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEEecC
Confidence 999999999999999999999999999997766666 455999999999999999999996 9999999999999999
Q ss_pred HHHHHHHhhhhccCchHHHHHhcccH---HHHHHcCCceeeecCCC
Q 004120 318 PEACAAILWKSAKASPKAAEKLKITG---SELCKLQIADGVIPEPL 360 (773)
Q Consensus 318 PEgaAsIl~rd~~~a~eaAe~lkitA---~dL~~lGiVD~IIpE~l 360 (773)
||+|++|+|++.++++++++.+++++ .+++++|+||+||+|+.
T Consensus 146 ~e~aa~I~~~~~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 146 LESMARVTKRSVEELEALAKSSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred HHHHHHHHccCHhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence 99999999999999999999877655 55899999999999883
No 14
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=100.00 E-value=1.1e-37 Score=348.14 Aligned_cols=212 Identities=23% Similarity=0.301 Sum_probs=190.3
Q ss_pred hhhcCCCCCCc-hhhhhhhhhh--hheeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHH
Q 004120 152 VNIARHPNRPT-FLDHVFNITE--KFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGY 228 (773)
Q Consensus 152 V~l~Rdp~RP~-~~d~I~~l~D--dF~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~ 228 (773)
-.+|-+|++|| ++++|.++|| +|+|++..|+ +++|||||||+|+||+|||||++ +.+|+++++++
T Consensus 278 ~ivP~d~~~pYDvrevI~rl~D~~~F~E~~~~~a----~~iV~GfaRi~G~pVGiIANqp~--------~~~G~l~~~sa 345 (526)
T COG4799 278 SIVPDDPRKPYDVREVIARLVDDGEFLEFKAGYA----KNIVTGFARIDGRPVGIIANQPR--------HLGGVLDIDSA 345 (526)
T ss_pred ccCCCCCCccccHHHHHHHhcCCccHHHHHhhhC----cceEEEEEEECCEEEEEEecCcc--------ccccccchHHH
Confidence 36788999999 9999999999 7999999998 99999999999999999999997 88999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccc----cce
Q 004120 229 RKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGC----ANK 304 (773)
Q Consensus 229 rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~----aD~ 304 (773)
.|++||+++|+.|++|||+|+|||||.+|...|..|+.++.|+++.+++.++||.|+||+|++||||+++|+. +|+
T Consensus 346 ~KaArFI~~cd~~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~ 425 (526)
T COG4799 346 DKAARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDF 425 (526)
T ss_pred HHHHHHHHhhhccCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999976 899
Q ss_pred eeeecCCeeeeeCHHHHHHHhhhhccCchHH-HH---H-hc----------ccHHHHHHcCCceeeecCCCCCCCCChHH
Q 004120 305 LLMLENAVFYVASPEACAAILWKSAKASPKA-AE---K-LK----------ITGSELCKLQIADGVIPEPLGGAHADPSW 369 (773)
Q Consensus 305 Vlm~e~A~~sVisPEgaAsIl~rd~~~a~ea-Ae---~-lk----------itA~dL~~lGiVD~IIpE~lGgAh~dP~~ 369 (773)
+||||+|.++||+|||+++|+|+....+.+. .+ . .+ ..+.-..+.|+||.|| ||.+
T Consensus 426 ~~AwP~a~iaVMG~egAv~i~~~k~l~~~~~~~~~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI---------~p~~ 496 (526)
T COG4799 426 NYAWPTAEIAVMGPEGAVSILYRKELAAAERPEEREALLRKQLIAEYEEQFSNPYYAAERGYIDAVI---------DPAD 496 (526)
T ss_pred eEecCcceeeecCHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhccchHHHHHhCCCCccc---------CHHH
Confidence 9999999999999999999999755443211 10 1 01 1334455679999999 9999
Q ss_pred HHHHHHHHHHHHHHH
Q 004120 370 TSQQIKIAINESMDE 384 (773)
Q Consensus 370 tr~~L~~aL~~~L~e 384 (773)
||.+|..+|......
T Consensus 497 tR~~L~~~l~~~~~k 511 (526)
T COG4799 497 TRAVLGRALSALANK 511 (526)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998777654
No 15
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=99.97 E-value=8e-32 Score=292.40 Aligned_cols=206 Identities=19% Similarity=0.256 Sum_probs=181.6
Q ss_pred cCCCCCCc-hhhhhhhhhh--hheeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHH
Q 004120 155 ARHPNRPT-FLDHVFNITE--KFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKA 231 (773)
Q Consensus 155 ~Rdp~RP~-~~d~I~~l~D--dF~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA 231 (773)
+.+-..|| ++++|.+++| +|+|+...|+ +++||||||++|+||+|++|++. +.+|+++.+.+.|.
T Consensus 306 ~~~~~~~yd~r~vi~~iVD~~~f~E~~~~y~----~tlvtGfarlnG~tVgIvgnn~k--------f~~G~L~s~sa~Kg 373 (536)
T KOG0540|consen 306 PLNLTKAYDVREVIARIVDGSRFFEFKPGYG----DTLVTGFARLNGRTVGIVGNNPK--------FAGGVLFSESAVKG 373 (536)
T ss_pred ccccccccchHhHHHhhcccchhhhhccccc----cceeeeeeeECCEEEEEeccCch--------hcccccchhhhhhh
Confidence 33447788 9999999999 7999998888 99999999999999999999996 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccc----cceeee
Q 004120 232 LRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGC----ANKLLM 307 (773)
Q Consensus 232 ~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~----aD~Vlm 307 (773)
+||+++|.++++|+|+|+|.|||++|..+|..|++++.|.++.+.++++||.|+||+|..+| |+|+|+. +|+++|
T Consensus 374 arfIe~c~q~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G~y~m~sr~~~gd~~ya 452 (536)
T KOG0540|consen 374 ARFIELCDQRNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-GNYAMCSRGYSGDINYA 452 (536)
T ss_pred HHHHHHHHhcCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccC-CcccccccccCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999 8998864 999999
Q ss_pred ecCCeeeeeCHHHHHHHhhhhccCch-----HHHHHhcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHH
Q 004120 308 LENAVFYVASPEACAAILWKSAKASP-----KAAEKLKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESM 382 (773)
Q Consensus 308 ~e~A~~sVisPEgaAsIl~rd~~~a~-----eaAe~lkitA~dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L 382 (773)
||+|+++|||.++++.|+++-..+.. +.+|.+ -.+.-....||+|+|| +|.+||..|+..+..++
T Consensus 453 wP~A~IavmG~~~a~~Vi~q~~~e~a~~~~~~~~E~f-~npy~a~~Rg~~D~II---------~p~~tR~vl~~~l~~~~ 522 (536)
T KOG0540|consen 453 WPNARIAVMGGKQAANVIFQITLEKAVALKAPYIEKF-GNPYYAAARGWDDGII---------DPSDTRKVLGLDLQAAA 522 (536)
T ss_pred cccceeeeccccchhhhhhhhhhhhhhhhcchHHHHh-cCccHHHHhhcccccc---------ChhHhhHHHHHHHHHHh
Confidence 99999999999999999987632211 122222 1223336779999999 99999999999887665
Q ss_pred H
Q 004120 383 D 383 (773)
Q Consensus 383 ~ 383 (773)
.
T Consensus 523 ~ 523 (536)
T KOG0540|consen 523 N 523 (536)
T ss_pred c
Confidence 3
No 16
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=99.97 E-value=4.9e-29 Score=264.52 Aligned_cols=202 Identities=16% Similarity=0.142 Sum_probs=169.9
Q ss_pred cCCCChhHHhhhcCCCCCCchhhhhhhhhhhheeccCCCC-----------------------CCCCCceEEEEEEECCe
Q 004120 143 YTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRA-----------------------GYDDPAIVTGIGSMDGR 199 (773)
Q Consensus 143 ~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~DdF~EL~gd~~-----------------------~~dD~aVVtGlArI~Gr 199 (773)
+-+|++++|+..+.|++. |.|+..... .+.+++||||+|+|+|+
T Consensus 55 h~rl~areRi~~L~D~gs-------------F~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~g~I~G~ 121 (292)
T PRK05654 55 HMRISARERLDLLLDEGS-------------FVELDAELEPKDPLKFRDSKKYKDRLKAAQKKTGLKDAVVTGKGTIEGM 121 (292)
T ss_pred CeeCCHHHHHHHHccCCc-------------cEEecCccccCCcccCCcccccchHHHHhhhccCCCCcEEEEEEEECCE
Confidence 446788888888888877 444433110 11248999999999999
Q ss_pred EEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCC
Q 004120 200 TYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGL 279 (773)
Q Consensus 200 pV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l 279 (773)
+|+|+++|++ +++|+++..+.+|++|++++|.++++|||+|+|+||++++++.-..+++..+++.+..++..
T Consensus 122 ~V~v~a~D~~--------f~gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a 193 (292)
T PRK05654 122 PVVLAVMDFS--------FMGGSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEA 193 (292)
T ss_pred EEEEEEEecc--------cccCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcC
Confidence 9999999997 99999999999999999999999999999999999999887766666767788888899999
Q ss_pred CCcEEEEEcCCCccchhhhccc-cceeeeecCCeeeeeCHHHHHHHhhhhccCchHHHHHhcccHHHHHHcCCceeeecC
Q 004120 280 KVPIISIVIGEGGSGGALAIGC-ANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVIPE 358 (773)
Q Consensus 280 ~VP~ISVViGeg~GGGAlA~g~-aD~Vlm~e~A~~sVisPEgaAsIl~rd~~~a~eaAe~lkitA~dL~~lGiVD~IIpE 358 (773)
+||+|+||+|+++||+++.++. +|+++|||+|.++++||+++...+..+. ++ --.+++-+.+.|+||.||
T Consensus 194 ~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprvie~~~~e~l---pe----~~~~ae~~~~~G~vD~Vv-- 264 (292)
T PRK05654 194 GLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPRVIEQTVREKL---PE----GFQRAEFLLEHGAIDMIV-- 264 (292)
T ss_pred CCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHHHHHhhhhhhh---hh----hhcCHHHHHhCCCCcEEE--
Confidence 9999999999999999888765 9999999999999999998887764221 21 134677788999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHH
Q 004120 359 PLGGAHADPSWTSQQIKIAINES 381 (773)
Q Consensus 359 ~lGgAh~dP~~tr~~L~~aL~~~ 381 (773)
+|.++|..|.+.|...
T Consensus 265 -------~~~e~r~~l~~~L~~~ 280 (292)
T PRK05654 265 -------HRRELRDTLASLLALH 280 (292)
T ss_pred -------CHHHHHHHHHHHHHHH
Confidence 9999999999988753
No 17
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=99.96 E-value=1.6e-28 Score=259.81 Aligned_cols=202 Identities=16% Similarity=0.109 Sum_probs=168.4
Q ss_pred cCCCChhHHhhhcCCCCCCchhhhhhhhhhhheeccCCCC------C-----------------CCCCceEEEEEEECCe
Q 004120 143 YTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRA------G-----------------YDDPAIVTGIGSMDGR 199 (773)
Q Consensus 143 ~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~DdF~EL~gd~~------~-----------------~dD~aVVtGlArI~Gr 199 (773)
+-.||+++||..+.|++. |.|+..... | +.++++|||+|+|+|+
T Consensus 54 h~rl~areRi~~L~D~gs-------------F~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~g~I~G~ 120 (285)
T TIGR00515 54 HMRMDARERIESLLDEGS-------------FEEFNSHLEPKDPLKFKDSKKYKDRIAKAQKETGEKDAVVTGKGTLYGM 120 (285)
T ss_pred cCcCCHHHHHHHceeCCe-------------eEEeCCccccCccccCCcccchhHHHHHHhhccCCCCcEEEEEEEECCE
Confidence 445788888888888776 555432100 1 1247999999999999
Q ss_pred EEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCC
Q 004120 200 TYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGL 279 (773)
Q Consensus 200 pV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l 279 (773)
||+|+++|++ +++|+++..+.+|++|++++|.++++|||+|+|++|++++++.....++..++..+..++..
T Consensus 121 ~V~v~a~D~~--------f~gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~ 192 (285)
T TIGR00515 121 PIVVAVFDFA--------FMGGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSER 192 (285)
T ss_pred EEEEEEEecc--------ccCCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcC
Confidence 9999999997 99999999999999999999999999999999999999987766666666677788889989
Q ss_pred CCcEEEEEcCCCccchhhhcc-ccceeeeecCCeeeeeCHHHHHHHhhhhccCchHHHHHhcccHHHHHHcCCceeeecC
Q 004120 280 KVPIISIVIGEGGSGGALAIG-CANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVIPE 358 (773)
Q Consensus 280 ~VP~ISVViGeg~GGGAlA~g-~aD~Vlm~e~A~~sVisPEgaAsIl~rd~~~a~eaAe~lkitA~dL~~lGiVD~IIpE 358 (773)
+||+|+||+|+++||+++.++ ++|+++|||+|.++++||++....+..+ .++ --.+|+-+.+.|.||.||
T Consensus 193 ~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprVie~ti~e~---lpe----~~q~ae~~~~~G~vD~iv-- 263 (285)
T TIGR00515 193 GLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREK---LPE----GFQTSEFLLEHGAIDMIV-- 263 (285)
T ss_pred CCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHHHHHHhcCc---cch----hcCCHHHHHhCCCCcEEE--
Confidence 999999999999999988875 7999999999999999999877655422 221 135778888999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHH
Q 004120 359 PLGGAHADPSWTSQQIKIAINES 381 (773)
Q Consensus 359 ~lGgAh~dP~~tr~~L~~aL~~~ 381 (773)
+|.++|..|.+.|...
T Consensus 264 -------~~~~~r~~l~~~L~~~ 279 (285)
T TIGR00515 264 -------HRPEMKKTLASLLAKL 279 (285)
T ss_pred -------CcHHHHHHHHHHHHHH
Confidence 8999999999988753
No 18
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=99.94 E-value=1.7e-25 Score=235.53 Aligned_cols=224 Identities=18% Similarity=0.145 Sum_probs=169.1
Q ss_pred cCCCChhHHhhhcCCCCCCchhhhhhhhhhhheeccCCC-------------CCCCCCceEEEEEEECCeEEEEEEeecC
Q 004120 143 YTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDR-------------AGYDDPAIVTGIGSMDGRTYMFMGHQKG 209 (773)
Q Consensus 143 ~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~DdF~EL~gd~-------------~~~dD~aVVtGlArI~GrpV~VIa~dkg 209 (773)
|-.||+++|+..+.|+++ |.|+-|.. ....++++|+|+|+|+|+||+|+++|++
T Consensus 3 ~~~ltAReRi~~LlD~gS-------------F~E~~g~~~~~~~~~l~~~~~~~~~~dgvV~G~G~I~Gr~v~v~a~D~t 69 (274)
T TIGR03133 3 FYEANARERARGLLDAGS-------------FRELLGPFDRVISPHLPRQGIVPQFDDGVVVGRGTIDGKPVVVAAQEGR 69 (274)
T ss_pred cccCCHHHHHHHhcCCCc-------------ceEcccccccccCcchhhhcccCCCCCeEEEEEEEECCEEEEEEEECCC
Confidence 567899999999999987 55552111 1123589999999999999999999997
Q ss_pred CCccccccccCCCCCHHHHHHHHHHHHHhhh-----cCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEE
Q 004120 210 RNTKENIQRNFGMPTPHGYRKALRMMYYADH-----HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPII 284 (773)
Q Consensus 210 ~~~~e~~~~ngG~~~peg~rKA~R~m~lAek-----f~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~I 284 (773)
+++|++++.+.+|..|++++|.+ .++|||.|+||+|++++++.....+...+++.+..++.. ||+|
T Consensus 70 --------~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~-vP~I 140 (274)
T TIGR03133 70 --------FQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAA-VPVI 140 (274)
T ss_pred --------ccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 99999999999999999999987 678999999999999986655554455677788888887 9999
Q ss_pred EEEcCC--CccchhhhccccceeeeecCCeeeeeCHHHHHHHhhhhccCchHHHHHh-cccHHHHHHcCCceeeecCCCC
Q 004120 285 SIVIGE--GGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKL-KITGSELCKLQIADGVIPEPLG 361 (773)
Q Consensus 285 SVViGe--g~GGGAlA~g~aD~Vlm~e~A~~sVisPEgaAsIl~rd~~~a~eaAe~l-kitA~dL~~lGiVD~IIpE~lG 361 (773)
+||+|+ |+||+++..++||+++|.+++++++.||+++...+..+.....+-+-.. -+.....+..|++|.+++
T Consensus 141 svv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~sG~~D~~v~---- 216 (274)
T TIGR03133 141 GVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHRFLSGDADVLVE---- 216 (274)
T ss_pred EEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHHHHHHhcCCCccCHHHhcccccccchHhHhhcccceEEeC----
Confidence 999999 7899999999999999999999999999999887654322222211000 123345677999999993
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 004120 362 GAHADPSWTSQQIKIAINESMDELGKMDTQELLK 395 (773)
Q Consensus 362 gAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~ 395 (773)
+|.+.++..+..+|...+.....++...+..
T Consensus 217 ---dd~~a~~~~~~~~l~~~~~~~~~~~~~~~~~ 247 (274)
T TIGR03133 217 ---DDVDAFRAAVIAALALGLPAAPRSDLAALYA 247 (274)
T ss_pred ---CHHHHHHHHHHHHHhccCCCCCcccHHHHHH
Confidence 2456666666665544322233333333333
No 19
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=99.94 E-value=2.1e-25 Score=254.59 Aligned_cols=201 Identities=23% Similarity=0.320 Sum_probs=160.8
Q ss_pred ccccchHhHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHhhhhhcCCCChhHHhhhcCCCCCCchhhhhhhhhhhheec
Q 004120 98 DFEKPLVGLSKKIMDVRKMANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVEL 177 (773)
Q Consensus 98 dFEkPIvel~~ki~~l~~la~~~giDlseEIq~LE~KleeL~kdI~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~DdF~EL 177 (773)
.|+.-+...+..+++|++..+.....=. +..+++ +...++||+|+||..+.|++.| |+|+
T Consensus 42 ~~~~n~~~~~~~~~~l~~~~~~~~~~gg------~~~v~r--~~~~gkltaReRI~~LlD~gS~------------F~El 101 (569)
T PLN02820 42 AFSANSKAMEGLLSELRSHVAKVRAGGG------PEAVKR--HRSRNKLLPRERIDRLLDPGSP------------FLEL 101 (569)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhcCC------HhHHHh--hhhcCCCCHHHHHHHHcCCCCC------------eEEc
Confidence 5777788888888877665432110000 111111 1235889999999999999886 7776
Q ss_pred cCCCC---CCC---CCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecC
Q 004120 178 HGDRA---GYD---DPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDT 251 (773)
Q Consensus 178 ~gd~~---~~d---D~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDT 251 (773)
+...+ +.+ .++||||+|+|+|++|+|++||++ +++|++++.+++|++|++++|.++++|||+|+||
T Consensus 102 ~~lag~~~y~~~~~~dgVVtG~G~V~Gr~V~v~a~D~t--------v~GGs~g~~~~~Ki~r~~elA~~~~lPlV~l~DS 173 (569)
T PLN02820 102 SQLAGHELYGEDLPSGGIVTGIGPVHGRLCMFVANDPT--------VKGGTYYPITVKKHLRAQEIAAQCRLPCIYLVDS 173 (569)
T ss_pred hhhccCCcccccCCCCeEEEEEEEECCEEEEEEEECCC--------ccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 53221 112 268999999999999999999997 8999999999999999999999999999999999
Q ss_pred CCCCCCHhHHHh---chHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeec-CCeeeeeCHHHHHHHhh
Q 004120 252 PGAYADLKSEEL---GQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLE-NAVFYVASPEACAAILW 326 (773)
Q Consensus 252 pGA~~g~~AEe~---Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e-~A~~sVisPEgaAsIl~ 326 (773)
+|+++..+.|.. .+...|++++..++..+||+||||+|+|+|||||+++++|+++|.+ ++.+++.||....+.+.
T Consensus 174 gGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~aGP~vV~~~~G 252 (569)
T PLN02820 174 GGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLAGPPLVKAATG 252 (569)
T ss_pred CCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEecCHHHHHhhcC
Confidence 999997655554 2446788888899988999999999999999999999999999987 69999999998888764
No 20
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=99.94 E-value=1.7e-25 Score=237.95 Aligned_cols=209 Identities=16% Similarity=0.133 Sum_probs=160.8
Q ss_pred hhcCCCChhHHhhhcCCCCCCchhhhhhhhhhhheeccCCCC-------------CCCCCceEEEEEEECCeEEEEEEee
Q 004120 141 DLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRA-------------GYDDPAIVTGIGSMDGRTYMFMGHQ 207 (773)
Q Consensus 141 dI~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~DdF~EL~gd~~-------------~~dD~aVVtGlArI~GrpV~VIa~d 207 (773)
.-|..||+++|+..+.|+++ |.|+.+... ...|++||+|+|+|+|+||+|+++|
T Consensus 10 ~s~~~ltARERi~~LlD~gS-------------F~E~~g~~~~~~~~~~~~~~~~~~~~dGvV~G~G~I~Gr~v~v~a~D 76 (301)
T PRK07189 10 RSFIEASARERAAALLDAGS-------------FRELLGPFERVMSPHLPLQGIPPQFDDGVVVGKGTLDGRPVVVAAQE 76 (301)
T ss_pred CCceeCCHHHHHHHhcCCCc-------------ceEcccccccccCcchhhhccCCCCCCcEEEEEEEECCEEEEEEEEC
Confidence 45788999999999999987 666522111 1125899999999999999999999
Q ss_pred cCCCccccccccCCCCCHHHHHHHHHHHHHhhhcC-----CcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCc
Q 004120 208 KGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHG-----FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVP 282 (773)
Q Consensus 208 kg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~-----LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP 282 (773)
++ +++|++|+.+.+|+.|++++|.+.+ +|+|.|+||+|++++++.....+...+++.+..++.. ||
T Consensus 77 ~t--------f~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~-VP 147 (301)
T PRK07189 77 GR--------FMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAA-VP 147 (301)
T ss_pred CC--------ccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCC-CC
Confidence 98 9999999999999999999999999 9999999999999986554444445677788888887 99
Q ss_pred EEEEEcCC--CccchhhhccccceeeeecCCeeeeeCHHHHHHHhhhhccCchHHHH---HhcccHHHHHHcCCceeeec
Q 004120 283 IISIVIGE--GGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKASPKAAE---KLKITGSELCKLQIADGVIP 357 (773)
Q Consensus 283 ~ISVViGe--g~GGGAlA~g~aD~Vlm~e~A~~sVisPEgaAsIl~rd~~~a~eaAe---~lkitA~dL~~lGiVD~IIp 357 (773)
+|+||.|+ |+||+++..++||+++|.++|++++.||+.+...+........+-+- .++- ...+..|++|.+++
T Consensus 148 ~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~VIe~~~G~e~~d~~d~~~vw~~lGG--~h~~~sG~~D~~v~ 225 (301)
T PRK07189 148 VIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGG--KHRYLSGLADALVD 225 (301)
T ss_pred EEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCHHHHHHhcCCcccCHHHhcccccccCc--ceeeecccceEEeC
Confidence 99999999 99999999999999999999999999999988865422111111000 0111 13344788888883
Q ss_pred CCCCCCCCChHHHHHHHHHHHHH
Q 004120 358 EPLGGAHADPSWTSQQIKIAINE 380 (773)
Q Consensus 358 E~lGgAh~dP~~tr~~L~~aL~~ 380 (773)
+|.+.++..+..++..
T Consensus 226 -------dd~~a~~~~~~~~~~~ 241 (301)
T PRK07189 226 -------DDVAAFRAAALALLAR 241 (301)
T ss_pred -------CHHHHHHHHHHHHHhc
Confidence 2555566655444443
No 21
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=99.93 E-value=2.2e-24 Score=228.58 Aligned_cols=199 Identities=18% Similarity=0.155 Sum_probs=159.3
Q ss_pred cCCCChhHHhhhcCCCCCCchhhhhhhhhhhheeccCCCC------C------------------CCCCceEEEEEEECC
Q 004120 143 YTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRA------G------------------YDDPAIVTGIGSMDG 198 (773)
Q Consensus 143 ~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~DdF~EL~gd~~------~------------------~dD~aVVtGlArI~G 198 (773)
+-.|++++||..+.|++. |.|+..... | +.+++||+|+|+|+|
T Consensus 66 h~rltAreRI~~L~D~gS-------------F~E~~~~~~~~dpl~f~~d~~~Y~~rl~~a~~~t~~~dgVVtG~G~I~G 132 (296)
T CHL00174 66 HLKMSSSDRIELLIDPGT-------------WNPMDEDMVSLDPIEFHSDEEPYKDRIDSYQKKTGLTDAVQTGIGQLNG 132 (296)
T ss_pred CcCCCHHHHHHHHccCCc-------------cEEcCCccCcCCCccccccccchHHHHHHHHhccCCCccEEEEEEEECC
Confidence 446788888888888876 555432110 1 114899999999999
Q ss_pred eEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHh-
Q 004120 199 RTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMF- 277 (773)
Q Consensus 199 rpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams- 277 (773)
++|+|+++|++ +++|+++....+|..|++++|.+.++|||.|+|++|++++++.....|+..++..+..+.
T Consensus 133 r~v~v~a~Dft--------f~gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~ 204 (296)
T CHL00174 133 IPVALGVMDFQ--------FMGGSMGSVVGEKITRLIEYATNESLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQS 204 (296)
T ss_pred EEEEEEEECCc--------ccccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHH
Confidence 99999999998 999999999999999999999999999999999999999887777666555554455433
Q ss_pred CCCCcEEEEEcCCCccchhhhccc-cceeeeecCCeeeeeCHHHHHHHhhhhccCchHHHHHhcccHHHHHHcCCceeee
Q 004120 278 GLKVPIISIVIGEGGSGGALAIGC-ANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVI 356 (773)
Q Consensus 278 ~l~VP~ISVViGeg~GGGAlA~g~-aD~Vlm~e~A~~sVisPEgaAsIl~rd~~~a~eaAe~lkitA~dL~~lGiVD~II 356 (773)
...||+|+||+|+++||+++.++. +|+++|-++|.+++.||.++...+..+ .++ . -.+|+-++++|.||.|+
T Consensus 205 ~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrVIe~t~ge~---lpe---~-fq~ae~l~~~G~vD~iV 277 (296)
T CHL00174 205 NKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKT---VPE---G-SQAAEYLFDKGLFDLIV 277 (296)
T ss_pred cCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHHHHHhcCCc---CCc---c-cccHHHHHhCcCceEEE
Confidence 567999999999999999998775 999999999999999999999877532 222 1 35888899999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHH
Q 004120 357 PEPLGGAHADPSWTSQQIKIAI 378 (773)
Q Consensus 357 pE~lGgAh~dP~~tr~~L~~aL 378 (773)
++.+++..|...|
T Consensus 278 ---------~r~~lr~~l~~ll 290 (296)
T CHL00174 278 ---------PRNLLKGVLSELF 290 (296)
T ss_pred ---------cHHHHHHHHHHHH
Confidence 4455555554443
No 22
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=99.91 E-value=6.1e-24 Score=238.40 Aligned_cols=164 Identities=24% Similarity=0.347 Sum_probs=146.6
Q ss_pred cCCCChhHHhhhcCCCCCCchhhhhhhhhhhheeccCCCCCC--------CCCceEEEEEEECCeEEEEEEeecCCCccc
Q 004120 143 YTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGY--------DDPAIVTGIGSMDGRTYMFMGHQKGRNTKE 214 (773)
Q Consensus 143 ~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~DdF~EL~gd~~~~--------dD~aVVtGlArI~GrpV~VIa~dkg~~~~e 214 (773)
-++||||+||..+.||+. |+|++.-.... -.+++|||+|+|+|++|+|++||++
T Consensus 40 ~GkltaReRv~~LlD~Gs-------------f~El~~~a~~~~~~~~~~~~~dGvVtG~G~i~Gr~~~v~a~D~T----- 101 (526)
T COG4799 40 KGKLTARERVELLLDPGS-------------FLELGALAGHRMGGDANELPGDGVVTGIGTINGRKVFVFANDFT----- 101 (526)
T ss_pred cCcCcHHHHHHHHcCCCc-------------hhhhhhhhhcccccccccCCCCeeEEeeeeeCCeEEEEEEecCc-----
Confidence 589999999999999987 66665322211 1379999999999999999999998
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccc
Q 004120 215 NIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSG 294 (773)
Q Consensus 215 ~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GG 294 (773)
+.+|++++.+.+|.+|++++|.+.++|+|.|.|++|++++.+...+...+.|+.+...+++. ||+||||+|+|.||
T Consensus 102 ---V~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~-IPqIsvv~G~c~gG 177 (526)
T COG4799 102 ---VKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGV-IPQISVVMGPCAGG 177 (526)
T ss_pred ---eecccccccccchHHHHHHHHHHcCCCEEEEEcccccccccCccccccchHHHHHHHHhccC-CCEEEEEEecCccc
Confidence 89999999999999999999999999999999999999999877775568899999999998 99999999999999
Q ss_pred hhhhccccceeeeecC-CeeeeeCHHHHHHHhhhh
Q 004120 295 GALAIGCANKLLMLEN-AVFYVASPEACAAILWKS 328 (773)
Q Consensus 295 GAlA~g~aD~Vlm~e~-A~~sVisPEgaAsIl~rd 328 (773)
|||..+++|+++|.++ +.+++.||..+-.++...
T Consensus 178 gaY~pal~D~~imv~~~~~mfltGP~~ik~vtGe~ 212 (526)
T COG4799 178 GAYSPALTDFVIMVRDQSYMFLTGPPVIKAVTGEE 212 (526)
T ss_pred ccccccccceEEEEcCCccEEeeCHHHHHhhcCcE
Confidence 9999999999999998 999999999877776543
No 23
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=99.90 E-value=1.7e-22 Score=228.96 Aligned_cols=194 Identities=21% Similarity=0.251 Sum_probs=155.1
Q ss_pred cCCCChhHHhhhcCCCCCCchhhhhhhhhhhheeccCCCC-----C------CCCCceEEEEEEECCeEEEEEEeecCCC
Q 004120 143 YTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRA-----G------YDDPAIVTGIGSMDGRTYMFMGHQKGRN 211 (773)
Q Consensus 143 ~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~DdF~EL~gd~~-----~------~dD~aVVtGlArI~GrpV~VIa~dkg~~ 211 (773)
.++||+++||..+.|++. |.|+..... + ...+++|||+|+|+|++|+|+++|++
T Consensus 28 ~g~l~areRi~~LlD~gs-------------F~E~~~~~~~~~~~~~~~~~~~~~dgvVtG~G~v~Gr~v~v~a~D~t-- 92 (512)
T TIGR01117 28 QGKMTARERLALLFDPGS-------------FVEIDQFVKHRCTNFGMDKKELPAEGVVTGYGTIDGRLVYAFAQDFT-- 92 (512)
T ss_pred cCCCCHHHHHHHhcCCCc-------------EEEecCccccCCCCccccccCCCCceEEEEEEEECCEEEEEEEECCc--
Confidence 488999999999999987 555532110 0 11379999999999999999999998
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCC
Q 004120 212 TKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEG 291 (773)
Q Consensus 212 ~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg 291 (773)
+++|++++.+.+|..|++++|.+.++|||+|+|++|++++.+.....+...++..+..++. .||+|+||+|+|
T Consensus 93 ------~~gGS~g~~~~~K~~r~~e~A~~~~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~-~iP~Isvv~G~~ 165 (512)
T TIGR01117 93 ------VMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASG-VVPQISAIMGPC 165 (512)
T ss_pred ------ccccCCCHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcC-CCcEEEEEecCC
Confidence 9999999999999999999999999999999999999998766665555566666555555 499999999999
Q ss_pred ccchhhhccccceeeeecC-CeeeeeCHHHHHHHhhhhccCchHHHHHhcccHHHH-------HHcCCceeeecCCCCCC
Q 004120 292 GSGGALAIGCANKLLMLEN-AVFYVASPEACAAILWKSAKASPKAAEKLKITGSEL-------CKLQIADGVIPEPLGGA 363 (773)
Q Consensus 292 ~GGGAlA~g~aD~Vlm~e~-A~~sVisPEgaAsIl~rd~~~a~eaAe~lkitA~dL-------~~lGiVD~IIpE~lGgA 363 (773)
+||+++..++||+++|.++ +++++.||....+.+..+ +++++| ...|++|-+.+
T Consensus 166 ~GG~a~~~al~D~vim~~~~a~i~~aGP~vv~~~~Ge~------------v~~e~lGGa~~h~~~sGv~d~~~~------ 227 (512)
T TIGR01117 166 AGGAVYSPALTDFIYMVDNTSQMFITGPQVIKTVTGEE------------VTAEQLGGAMAHNSVSGVAHFIAE------ 227 (512)
T ss_pred CcHHHHHHHhcCceEEeccceEEEecChHHHHhhcCcc------------cchhhcchHHHhccccceeEEecC------
Confidence 9999999999999999996 679999999988876532 233333 34788888884
Q ss_pred CCChHHHHHHHHHHH
Q 004120 364 HADPSWTSQQIKIAI 378 (773)
Q Consensus 364 h~dP~~tr~~L~~aL 378 (773)
|..+....++++|
T Consensus 228 --de~ea~~~~r~~l 240 (512)
T TIGR01117 228 --DDDDCIMLIRRLL 240 (512)
T ss_pred --ChHHHHHHHHHHH
Confidence 4445555554443
No 24
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=99.88 E-value=3.6e-22 Score=225.50 Aligned_cols=189 Identities=24% Similarity=0.306 Sum_probs=157.9
Q ss_pred hcCCCChhHHhhhcCCCCCCchhhhhhhhhhhheeccCCCCC---------CCCCceEEEEEEECCeEEEEEEeecCCCc
Q 004120 142 LYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAG---------YDDPAIVTGIGSMDGRTYMFMGHQKGRNT 212 (773)
Q Consensus 142 I~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~DdF~EL~gd~~~---------~dD~aVVtGlArI~GrpV~VIa~dkg~~~ 212 (773)
..++|++|+||..+.||+. |.|++..... ..++++|||+|+|+|++|+|+++|++
T Consensus 4 ~~Gk~~areRi~~L~D~gS-------------F~E~~~~~~~~~~~~~~~~~p~~gvvtG~G~I~G~~v~v~a~D~t--- 67 (493)
T PF01039_consen 4 ARGKLTARERIDLLLDPGS-------------FRELGDLAGAARYKFGREKTPGDGVVTGIGKINGRPVVVIAQDFT--- 67 (493)
T ss_dssp HTTEEEHHHHHHHHSGTTE-------------BEEESTTHHTTHCGGGGGH-TTTTEEEEEEEETTEEEEEEEEETT---
T ss_pred ccCCcCHHHHHHHhcCCCC-------------CcCchHHHhccccccccccCCCCcEEEEEEeeCCeeEEEEEeccc---
Confidence 3578999999999999987 6666533211 13579999999999999999999998
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCC--CCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCC
Q 004120 213 KENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGA--YADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGE 290 (773)
Q Consensus 213 ~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA--~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGe 290 (773)
+.+|++++.+++|..|++++|.+.++|+|.|+|++|+ ++..+.+...+...++..+..++. .+|+|+||+|+
T Consensus 68 -----~~gGs~g~~~~~Ki~ra~~~A~~~~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~-~iP~I~vv~G~ 141 (493)
T PF01039_consen 68 -----VLGGSVGEVHGEKIARAIELALENGLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSG-GIPQISVVTGP 141 (493)
T ss_dssp -----SGGGTBSHHHHHHHHHHHHHHHHHTEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHT-TS-EEEEEESE
T ss_pred -----eecCCCCcccceeeehHHHHHHHcCCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhc-CCCeEEEEccc
Confidence 9999999999999999999999999999999999999 777888877777789999999998 89999999999
Q ss_pred CccchhhhccccceeeeecC-CeeeeeCHHHHHHHhhhhccCchHHHHHhcccHHHHHHcCCceeeec
Q 004120 291 GGSGGALAIGCANKLLMLEN-AVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVIP 357 (773)
Q Consensus 291 g~GGGAlA~g~aD~Vlm~e~-A~~sVisPEgaAsIl~rd~~~a~eaAe~lkitA~dL~~lGiVD~IIp 357 (773)
|+|||||..+++|+++|.++ +++++.||....+.+..+ ....+ ++-........|++|-|++
T Consensus 142 ~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP~vv~~~~Ge~-~~~~~----lgG~~~h~~~sG~~d~v~~ 204 (493)
T PF01039_consen 142 CTGGGAYLAALSDFVIMVKGTARIFLAGPRVVESATGEE-VDSEE----LGGADVHAAKSGVVDYVVD 204 (493)
T ss_dssp EEGGGGHHHHHSSEEEEETTTCEEESSTHHHHHHHHSSC-TSHHH----HHBHHHHHHTSSSSSEEES
T ss_pred cccchhhcccccCccccCccceEEEeccccccccccCcc-ccchh----hhhhhhhcccCCCceEEEe
Confidence 99999999999999999997 999999999998887621 11111 1111123467899999993
No 25
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=99.85 E-value=5.3e-20 Score=191.66 Aligned_cols=157 Identities=19% Similarity=0.171 Sum_probs=142.5
Q ss_pred CCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhc
Q 004120 185 DDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELG 264 (773)
Q Consensus 185 dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~G 264 (773)
.+++||+|.|+|+|.||++.+.|+. +++|++|.....|+.|+++.|.+.++|+|.|.-|+||+++++.-...
T Consensus 108 ~~davvtg~g~i~G~pvv~av~df~--------FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQEg~lSLM 179 (294)
T COG0777 108 LDDAVVTGEGTINGLPVVLAVMDFA--------FMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGILSLM 179 (294)
T ss_pred CCcceEEEeeEECCeEEEEEEEecc--------ccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhHHHHHHH
Confidence 3699999999999999999999996 99999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhcc-ccceeeeecCCeeeeeCHHHHHHHhhhhccCchHHHHHhcccH
Q 004120 265 QGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIG-CANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKITG 343 (773)
Q Consensus 265 qa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g-~aD~Vlm~e~A~~sVisPEgaAsIl~rd~~~a~eaAe~lkitA 343 (773)
|+..+...+..+...+.|+|+|++++.+||-....+ ++|++++-|.|.++++||+++...+.. ..|+- -+++
T Consensus 180 QMaktsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVIEQTire---~LPeg----fQ~a 252 (294)
T COG0777 180 QMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVIEQTIRE---KLPEG----FQTA 252 (294)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhhhhhhcc---cCCcc----hhhH
Confidence 999999999999999999999999999887544443 599999999999999999999887752 23332 4688
Q ss_pred HHHHHcCCceeee
Q 004120 344 SELCKLQIADGVI 356 (773)
Q Consensus 344 ~dL~~lGiVD~II 356 (773)
+.|+++|.||.||
T Consensus 253 EfLlehG~iD~iv 265 (294)
T COG0777 253 EFLLEHGMIDMIV 265 (294)
T ss_pred HHHHHcCCceeee
Confidence 9999999999999
No 26
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=99.79 E-value=2.1e-19 Score=196.34 Aligned_cols=185 Identities=24% Similarity=0.361 Sum_probs=154.3
Q ss_pred hcCCCChhHHhhhcCCCCCCchhhhhhhhhhhheeccCCCC--CCCCCceEEEEEEECCeEEEEEEeecCCCcccccccc
Q 004120 142 LYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRA--GYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRN 219 (773)
Q Consensus 142 I~~~Lt~weRV~l~Rdp~RP~~~d~I~~l~DdF~EL~gd~~--~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~n 219 (773)
-+++|+|++||.++.||+.|+.. .|.|.+ |+-++ -....+||||.|+|+|+.|+||+||++ +.
T Consensus 60 srgkl~arerIdlLld~gs~Fie------~d~fa~-h~m~~~e~~ps~sIvtg~g~i~gr~~~vianDfT--------v~ 124 (536)
T KOG0540|consen 60 SRGKLLARERIDLLLDPGSPFIE------LDQFAG-HEMYGKEKVPSGSIVTGRGRINGRKCFVIANDFT--------VK 124 (536)
T ss_pred hhcccchhhhhhhccCCCCccee------hhhhhh-hhhccccCCCCCceEeccccccceEEEEEccCch--------hc
Confidence 58999999999999999999311 112222 12221 012479999999999999999999998 89
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhch---HHHHHHHHHHHhCCCCcEEEEEcCCCccchh
Q 004120 220 FGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQ---GEAIAHNLRTMFGLKVPIISIVIGEGGSGGA 296 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gq---a~aIAr~L~ams~l~VP~ISVViGeg~GGGA 296 (773)
+|+.+|-...|.+|.++.|...++|+|.|+||+|+++..++|..-- ...|+.+-.-|+.-.+|+|++|+|.|.+||+
T Consensus 125 ggs~y~i~~kk~lr~~e~a~~~~~p~iyL~DSgga~l~~~~es~~d~~~~~~If~n~n~mss~~ipqis~Img~Ct~gg~ 204 (536)
T KOG0540|consen 125 GGSYYPITVKKHLRAQEIADNNRLPCIYLVDSGGARLPRQAESFADSYHFGRIFYNQNVMSSGNIPQISVIMGSCTAGGA 204 (536)
T ss_pred ccccchhhHHHHhhHHHHHhhcCCCceeEecCccccCcchhhhcCChhhhheeeeecceeccCCCCceeEEEecccCCce
Confidence 9999999999999999999999999999999999999999997644 4467777778888899999999999999999
Q ss_pred hhccccceeeeec-CCeeeeeCHHHHHHHhhhhccCchHHHHHhcccHHHHHHcCCceeeecCCCCCCCCCh
Q 004120 297 LAIGCANKLLMLE-NAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVIPEPLGGAHADP 367 (773)
Q Consensus 297 lA~g~aD~Vlm~e-~A~~sVisPEgaAsIl~rd~~~a~eaAe~lkitA~dL~~lGiVD~IIpE~lGgAh~dP 367 (773)
|..+.+|..+|.. .++++..+|...- ...-.+|+.|.+|||....
T Consensus 205 y~pAm~d~~~~vk~~s~lfl~gp~lVk--------------------------a~tnEevsqedlgga~~hc 250 (536)
T KOG0540|consen 205 YVPAMADETIMVKDTSTLFLAGPPLVK--------------------------AATNEEVSQEDLGGADLHC 250 (536)
T ss_pred ecccccceeEEecCcceEEecCCchhh--------------------------hhccceeehhhcCCcceee
Confidence 9999999999998 5888888988433 3445778899999987654
No 27
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=99.69 E-value=1.7e-16 Score=163.64 Aligned_cols=161 Identities=23% Similarity=0.283 Sum_probs=137.0
Q ss_pred CCceEEEEEEE-CCeEEEEEEeecCCCccccccccCCCCCHHHHHHHH-HHHH-HhhhcCCcEEEEecCCCCCCCHhHHH
Q 004120 186 DPAIVTGIGSM-DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKAL-RMMY-YADHHGFPIVTFIDTPGAYADLKSEE 262 (773)
Q Consensus 186 D~aVVtGlArI-~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~-R~m~-lAekf~LPIVtLIDTpGA~~g~~AEe 262 (773)
+..++.|-+.. +|+.|.||+... .|.+|-+..-..+ .+.+ +....++|||.+|||||..+|...|.
T Consensus 16 ~~~v~~g~~~~~~~~~iaVvg~~~-----------~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEl 84 (234)
T PF06833_consen 16 SVQVLDGEAGGEDGRFIAVVGDAN-----------HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRREEL 84 (234)
T ss_pred ccceEEeeccccCCcEEEEEecCC-----------CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchHHHH
Confidence 46799999998 999999999874 3667755544444 4443 45678999999999999999999999
Q ss_pred hchHHHHHHHHH---HHhCCCCcEEEEEcCCCccchhhhccc-cceeeeecCCeeeeeCHHHHHHHhhhhccCchHHHHH
Q 004120 263 LGQGEAIAHNLR---TMFGLKVPIISIVIGEGGSGGALAIGC-ANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEK 338 (773)
Q Consensus 263 ~Gqa~aIAr~L~---ams~l~VP~ISVViGeg~GGGAlA~g~-aD~Vlm~e~A~~sVisPEgaAsIl~rd~~~a~eaAe~ 338 (773)
.|+.+++|.... .....+.|+|++|+|++.|||+++.|+ +|++|+++++.+.||+.+++|.|+.++.+..+++++.
T Consensus 85 lGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga~i~vM~~~s~ARVTk~~ve~Le~la~s 164 (234)
T PF06833_consen 85 LGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPGAMIHVMGKPSAARVTKRPVEELEELAKS 164 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCCCeeecCChHHhHHHhhcCHHHHHHHhhc
Confidence 999876665544 445689999999999999999999987 9999999999999999999999999999999999988
Q ss_pred hcccH---HHHHHcCCceeeec
Q 004120 339 LKITG---SELCKLQIADGVIP 357 (773)
Q Consensus 339 lkitA---~dL~~lGiVD~IIp 357 (773)
....| +.++++|.++++++
T Consensus 165 ~PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 165 VPVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred CCCcCCCHHHHHHhccHHHHhc
Confidence 77666 66789999999995
No 28
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=99.10 E-value=3.4e-11 Score=145.01 Aligned_cols=184 Identities=17% Similarity=0.161 Sum_probs=150.4
Q ss_pred hcCCCChhHH-hhhcCCCCCCc-hhhhh----------hhhhh--hheeccCCCCCCCCCceEEEEEEECCeEEEEEEee
Q 004120 142 LYTHLTPIQR-VNIARHPNRPT-FLDHV----------FNITE--KFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQ 207 (773)
Q Consensus 142 I~~~Lt~weR-V~l~Rdp~RP~-~~d~I----------~~l~D--dF~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~d 207 (773)
++..+++|+| |......+.|| +|.+| ..+|| +|.|+.+.|+ .+||+|.||++|.||||||.+
T Consensus 1782 ~l~~~D~~dR~vef~p~~q~~yD~Rwli~G~~~~~~~~~GlFDk~SF~Eil~~WA----ktVV~GRArLgGIPvGVIavE 1857 (2196)
T KOG0368|consen 1782 FLEPKDPPDRDVEFVPSTQNPYDPRWLIAGKNDSTGWLSGLFDKGSFDEILSGWA----KTVVTGRARLGGIPVGVIAVE 1857 (2196)
T ss_pred ccCCCCCcccceeccCCCCCCCCHHHHhcCCcCCCccccccccCccHHHHHhHHh----hHheecceecCCcceEEEEEE
Confidence 4556688998 55554445566 56554 55888 8999988898 999999999999999999998
Q ss_pred cCC------------Ccccc-ccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHH
Q 004120 208 KGR------------NTKEN-IQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLR 274 (773)
Q Consensus 208 kg~------------~~~e~-~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ 274 (773)
... ++.+. ++..|..|.|+.+-|.++++.-.++.++|++.|.+.-||.-|....-.+.....|..+.
T Consensus 1858 trtve~~vPADPan~dS~e~i~q~AGQVWyPdSAfKTaQAInDFNrEqLPLmIiAnwRGFSGGqkDMy~~VLkfGa~IVD 1937 (2196)
T KOG0368|consen 1858 TRTVENIVPADPANLDSEEQITQEAGQVWYPDSAFKTAQAINDFNREQLPLMIIANWRGFSGGQKDMYDQVLKFGAYIVD 1937 (2196)
T ss_pred eeeeeeeccCCCCCCCcHhhhhhcCCceecCchHHHHHHHHhhhccccCCeEEeecccccCccchHHHHHHHHHHHHHHH
Confidence 542 23343 57788899999999999999988889999999999999999988888888899999999
Q ss_pred HHhCCCCcEEEEEc--CCCccchhhhcc----ccceeee--ecCCeeeeeCHHHHHHHhhhhcc
Q 004120 275 TMFGLKVPIISIVI--GEGGSGGALAIG----CANKLLM--LENAVFYVASPEACAAILWKSAK 330 (773)
Q Consensus 275 ams~l~VP~ISVVi--Geg~GGGAlA~g----~aD~Vlm--~e~A~~sVisPEgaAsIl~rd~~ 330 (773)
+++..+.|++..|- |+ .-||+|+.. .+|++-| -+.++-+|+-|+|...|-||...
T Consensus 1938 aL~~YkQPv~vYIPp~gE-LRGGsWvVvD~tIn~~~memyAD~~sRggVLEPeg~v~IKfRre~ 2000 (2196)
T KOG0368|consen 1938 ALRQYKQPVLVYIPPMGE-LRGGSWVVVDPTINPDQMEMYADEESRGGVLEPEGVVEIKFRREM 2000 (2196)
T ss_pred HHHHhCCceEEEcCcchh-hcCceEEEEcCccCHHHHHHHhhhhhccccccCCceEEEEeeHHH
Confidence 99999999998775 66 467888653 2565544 46799999999999999998753
No 29
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=99.08 E-value=7.8e-10 Score=115.67 Aligned_cols=164 Identities=19% Similarity=0.292 Sum_probs=129.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhH------H-------Hhc--hHHHHH---HHHHHHhCCC
Q 004120 219 NFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKS------E-------ELG--QGEAIA---HNLRTMFGLK 280 (773)
Q Consensus 219 ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~A------E-------e~G--qa~aIA---r~L~ams~l~ 280 (773)
+..++..+.|.-..|+...|....--.++++-..|-+..-+. - +.. ....+. ..+.++...+
T Consensus 28 k~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~ 107 (266)
T KOG0016|consen 28 KKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFP 107 (266)
T ss_pred ccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCC
Confidence 567899999999999999988776657777766653332111 1 110 111222 2567888999
Q ss_pred CcEEEEEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHHh----cccHHHHHHcC
Q 004120 281 VPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEKL----KITGSELCKLQ 350 (773)
Q Consensus 281 VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~l----kitA~dL~~lG 350 (773)
.|+|+.|.|+++|-||..+++||+||+.+.+||.+ .+||||+++++........|.|.+ +++|++++..|
T Consensus 108 Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~g 187 (266)
T KOG0016|consen 108 KPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKG 187 (266)
T ss_pred CCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcC
Confidence 99999999999999999999999999999999876 799999999998877777777765 79999999999
Q ss_pred CceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 004120 351 IADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 395 (773)
Q Consensus 351 iVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~ 395 (773)
+|+.|.+. ..+.+.+...++++++++|..++.
T Consensus 188 lVskif~~-------------~tf~~~v~~~ikq~s~l~p~sl~~ 219 (266)
T KOG0016|consen 188 LVSKIFPA-------------ETFNEEVLKKIKQYSKLSPESLLG 219 (266)
T ss_pred chhhhcCh-------------HHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999952 356677788889999999988643
No 30
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=99.02 E-value=9.5e-11 Score=123.18 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=72.4
Q ss_pred CcchHHHHHHhhhccCCCCC---CCCCCCCCCcccccc------ccccccCCCCCCCCCcccccccchHhHHHHHHHHHh
Q 004120 45 RGFAVSAKLRKVKKHDYPWP---KDPKDVDPNVKGGVL------THLSHFKPLKEKPKPVTLDFEKPLVGLSKKIMDVRK 115 (773)
Q Consensus 45 ~~~~v~~~~~~~k~~~~p~~---~~p~~~~~~~~gGv~------~~l~~~~P~~~~~~~~~LdFEkPIvel~~ki~~l~~ 115 (773)
.|+||||+|++|+++++||+ ||| |||||+ |||++||| .++++|.+|++
T Consensus 180 QMaktsaAl~~l~ea~lpyIsVLt~P------TtGGVsASfA~lGDi~iAEP------~AlIGFAGpRV----------- 236 (294)
T COG0777 180 QMAKTSAALKRLSEAGLPYISVLTDP------TTGGVSASFAMLGDIIIAEP------GALIGFAGPRV----------- 236 (294)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCC------CccchhHhHHhccCeeecCc------ccccccCcchh-----------
Confidence 48999999999999999999 999 999995 99999999 99999999999
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhhhhc
Q 004120 116 MANDTGLDFSDQIVSLENKYQQALKDLY 143 (773)
Q Consensus 116 la~~~giDlseEIq~LE~KleeL~kdI~ 143 (773)
++++.+.++++.+|+.|+.++|+..|.+
T Consensus 237 IEQTire~LPegfQ~aEfLlehG~iD~i 264 (294)
T COG0777 237 IEQTIREKLPEGFQTAEFLLEHGMIDMI 264 (294)
T ss_pred hhhhhcccCCcchhhHHHHHHcCCceee
Confidence 9999999999999999999999988765
No 31
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=98.90 E-value=5.2e-09 Score=104.81 Aligned_cols=127 Identities=24% Similarity=0.260 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHHHHhhhcC-CcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEc---CCCccchh
Q 004120 221 GMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVI---GEGGSGGA 296 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAekf~-LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVVi---Geg~GGGA 296 (773)
|.+++.......+.++.|...+ -+|+..|||||-.+.. ....+.++..+++|+|+.|. |.+.|||+
T Consensus 8 g~I~~~~~~~l~~~l~~a~~~~~~~vvl~InSpGG~v~~----------~~~i~~~l~~~~kPvia~v~~~~G~AasgG~ 77 (187)
T cd07020 8 GAITPATADYLERAIDQAEEGGADALIIELDTPGGLLDS----------TREIVQAILASPVPVVVYVYPSGARAASAGT 77 (187)
T ss_pred eEEChHHHHHHHHHHHHHHhCCCCEEEEEEECCCCCHHH----------HHHHHHHHHhCCCCEEEEEecCCCCchhHHH
Confidence 5567777788888888777655 5588889999944321 12233445567899999999 99999999
Q ss_pred hhccccceeeeecCCeeeeeCHHH---------------------HHHHhhhhccCchHHH-----HHhcccHHHHHHcC
Q 004120 297 LAIGCANKLLMLENAVFYVASPEA---------------------CAAILWKSAKASPKAA-----EKLKITGSELCKLQ 350 (773)
Q Consensus 297 lA~g~aD~Vlm~e~A~~sVisPEg---------------------aAsIl~rd~~~a~eaA-----e~lkitA~dL~~lG 350 (773)
+....||+++|.|++.++...|-+ ....+.+..-...+.+ ....++++++++.|
T Consensus 78 ~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~G 157 (187)
T cd07020 78 YILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLG 157 (187)
T ss_pred HHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcC
Confidence 999999999999999999855531 1111111111111222 22468999999999
Q ss_pred Cceeeec
Q 004120 351 IADGVIP 357 (773)
Q Consensus 351 iVD~IIp 357 (773)
+||+|++
T Consensus 158 lvd~v~~ 164 (187)
T cd07020 158 VIDLIAA 164 (187)
T ss_pred CcccccC
Confidence 9999993
No 32
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.88 E-value=2.7e-08 Score=102.63 Aligned_cols=175 Identities=16% Similarity=0.131 Sum_probs=118.2
Q ss_pred ECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhc-CCcEEEEecCCCCCC-CHhHHH---------hc
Q 004120 196 MDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEE---------LG 264 (773)
Q Consensus 196 I~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf-~LPIVtLIDTpGA~~-g~~AEe---------~G 264 (773)
++|.-..|.-+++. ...+++++..+....+++.++.. ++-+|.+--+++++. |.+... ..
T Consensus 4 ~~~~v~~i~ln~p~---------~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~ 74 (245)
T PF00378_consen 4 IEDGVATITLNRPE---------KRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEARE 74 (245)
T ss_dssp EETTEEEEEEECGG---------GTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHH
T ss_pred EECCEEEEEECCCC---------CCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccc
Confidence 34444455555542 34568999999999999887664 344666666665554 332211 22
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeee------eCHH-HHHHHhhhhccCchHHHH
Q 004120 265 QGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPE-ACAAILWKSAKASPKAAE 337 (773)
Q Consensus 265 qa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPE-gaAsIl~rd~~~a~eaAe 337 (773)
....+...+..+..+++|+|++|.|.|+|||+.....||++||.+++.|+. +.|. +....+.+. .....+.+
T Consensus 75 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~-~g~~~a~~ 153 (245)
T PF00378_consen 75 FFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRL-IGPSRARE 153 (245)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHH-HHHHHHHH
T ss_pred cchhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCccccccccccccee-eecccccc
Confidence 345666777788889999999999999999998888999999999999875 4443 333333332 21222222
Q ss_pred ----HhcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 338 ----KLKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 338 ----~lkitA~dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
...++|+++++.|+||.|+|.+ .+........+.+...|+..+
T Consensus 154 l~l~g~~~~a~eA~~~Glv~~v~~~~-------------~l~~~a~~~a~~l~~~~~~a~ 200 (245)
T PF00378_consen 154 LLLTGEPISAEEALELGLVDEVVPDE-------------ELDEEALELAKRLAAKPPSAL 200 (245)
T ss_dssp HHHHTCEEEHHHHHHTTSSSEEESGG-------------GHHHHHHHHHHHHHTSCHHHH
T ss_pred cccccccchhHHHHhhcceeEEcCch-------------hhhHHHHHHHHHHhcCCHHHH
Confidence 2378999999999999999643 244455555566777776664
No 33
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.85 E-value=9.5e-08 Score=99.62 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=110.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh------c--hHHHHHHHHHHHhCCCCcEEEEEc
Q 004120 219 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------G--QGEAIAHNLRTMFGLKVPIISIVI 288 (773)
Q Consensus 219 ngG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~------G--qa~aIAr~L~ams~l~VP~ISVVi 288 (773)
...+++++.+....++++.++. -.+-+|.|.-.++++. |.+..+. + ....+...+..+..+++|+|+.|.
T Consensus 26 ~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 105 (251)
T PRK06023 26 KKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVD 105 (251)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3466899999999999976654 4566777777665544 3322211 1 112333456678889999999999
Q ss_pred CCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecC
Q 004120 289 GEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPE 358 (773)
Q Consensus 289 Geg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE 358 (773)
|.+.|||......||+++|.++++|++ +.|.++....+........+.+. ..++++++++.|+||+|+|.
T Consensus 106 G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 185 (251)
T PRK06023 106 GLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDE 185 (251)
T ss_pred CceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCH
Confidence 999999999999999999999999765 33554444443332222222222 36899999999999999942
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 359 PLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 359 ~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
+ .+..........|...|+..+.
T Consensus 186 ---------~----~l~~~a~~~a~~l~~~~~~a~~ 208 (251)
T PRK06023 186 ---------E----AVEAETLKAAEELAAKPPQALQ 208 (251)
T ss_pred ---------H----HHHHHHHHHHHHHHhCCHHHHH
Confidence 2 2344455556677777877653
No 34
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=98.81 E-value=1.8e-07 Score=97.72 Aligned_cols=160 Identities=13% Similarity=0.083 Sum_probs=104.8
Q ss_pred CCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC-CHhHHHhc--------h----HHHHHHHHHHHhCCCCcEEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYA-DLKSEELG--------Q----GEAIAHNLRTMFGLKVPIISIV 287 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~-g~~AEe~G--------q----a~aIAr~L~ams~l~VP~ISVV 287 (773)
.+++++.+....+.++.++.-.+-+|.|.-++.++. |.+..+.. . .......+..+..+++|+|+.|
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 100 (256)
T TIGR02280 21 NSFTAEMHLELREALERVERDDARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAV 100 (256)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 468999999999999887655555666655443332 32222110 0 1112334567788999999999
Q ss_pred cCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCCceeeec
Q 004120 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGVIP 357 (773)
Q Consensus 288 iGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGiVD~IIp 357 (773)
.|.++|||......||++||.++++|+. +.|.++....+........+.+ ...++++++++.|+||+|+|
T Consensus 101 ~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 180 (256)
T TIGR02280 101 NGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVD 180 (256)
T ss_pred CCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceeeC
Confidence 9999999999888999999999998874 3344333333322222222222 23689999999999999995
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 358 EPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 358 E~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
. + .+..........|...|+..+
T Consensus 181 ~---------~----~l~~~a~~~a~~la~~~~~~~ 203 (256)
T TIGR02280 181 D---------A----ALMDEAQALAVHLAAQPTRGL 203 (256)
T ss_pred h---------H----HHHHHHHHHHHHHHhCCHHHH
Confidence 3 2 234445555567777777664
No 35
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.81 E-value=1.6e-07 Score=98.39 Aligned_cols=160 Identities=12% Similarity=0.040 Sum_probs=107.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC-CHhHHHh---------chHHHHHHHHHHHhCCCCcEEEEEcC
Q 004120 220 FGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYA-DLKSEEL---------GQGEAIAHNLRTMFGLKVPIISIVIG 289 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~-g~~AEe~---------Gqa~aIAr~L~ams~l~VP~ISVViG 289 (773)
..+++++.+....+.++.++ -.+-+|.|.-.+.++. |.+..+. .........+..+..+++|+|+.|.|
T Consensus 23 ~Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 101 (255)
T PRK08150 23 RNALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHG 101 (255)
T ss_pred ccCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 35689999999999998777 5666777765543332 3222111 11122344566778899999999999
Q ss_pred CCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecCC
Q 004120 290 EGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEP 359 (773)
Q Consensus 290 eg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE~ 359 (773)
.|.|||......||+++|.++++|+. +.|.++....+........+.+. ..++++++++.|+||.|+|..
T Consensus 102 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK08150 102 AVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAG 181 (255)
T ss_pred EEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCch
Confidence 99999999888999999999999876 33444433333332222233322 368999999999999999532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 360 LGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 360 lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
.+..........|...|+..+
T Consensus 182 -------------~l~~~a~~~a~~la~~~~~a~ 202 (255)
T PRK08150 182 -------------EALDKAMELARRIAQNAPLTN 202 (255)
T ss_pred -------------HHHHHHHHHHHHHHhCCHHHH
Confidence 233333445567777777665
No 36
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.79 E-value=1.7e-07 Score=98.15 Aligned_cols=161 Identities=14% Similarity=0.131 Sum_probs=105.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC-CHhHHHh-----------c--hHHHHHHHHHHHhCCCCcEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYA-DLKSEEL-----------G--QGEAIAHNLRTMFGLKVPIISI 286 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~-g~~AEe~-----------G--qa~aIAr~L~ams~l~VP~ISV 286 (773)
.+++++.+......++.++...+.+|.|.-.+.++. |.+..+. + ....+...+..+..+++|+|+.
T Consensus 26 Nal~~~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK08140 26 NSFTREMHRELREALDQVEDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAA 105 (262)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 568899999999999877655566666655443332 2221111 0 0112233566788899999999
Q ss_pred EcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeee
Q 004120 287 VIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVI 356 (773)
Q Consensus 287 ViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~II 356 (773)
|.|.+.|||......||++||.++++|+. +.|..+....+........+.+. ..++++++++.|+||+|+
T Consensus 106 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 185 (262)
T PRK08140 106 VNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVV 185 (262)
T ss_pred ECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEee
Confidence 99999999999888999999999998873 22333333333322222222222 368999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 357 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 357 pE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
|.+ .+..........|...|+..+.
T Consensus 186 ~~~-------------~l~~~a~~~a~~ia~~~~~a~~ 210 (262)
T PRK08140 186 DDA-------------ALADEAQQLAAHLATQPTRGLA 210 (262)
T ss_pred ChH-------------HHHHHHHHHHHHHHhCCHHHHH
Confidence 532 2334455555667777776643
No 37
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=98.79 E-value=1.9e-07 Score=98.71 Aligned_cols=162 Identities=12% Similarity=0.148 Sum_probs=109.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHhc--------------------hHHHHHHHHHHHh
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG--------------------QGEAIAHNLRTMF 277 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~G--------------------qa~aIAr~L~ams 277 (773)
..+++++.+.....+++.++. ..+-+|.|.-++.++. |.+..+.. ......+.+..+.
T Consensus 29 ~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 108 (275)
T PLN02664 29 RNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIE 108 (275)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 356899999999998877653 4566777766554333 32221110 0111233455678
Q ss_pred CCCCcEEEEEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHH
Q 004120 278 GLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELC 347 (773)
Q Consensus 278 ~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~ 347 (773)
.+++|+|+.|.|.+.|||+.....||+++|.++++|+. +.|..+....+........+.+. ..+++++++
T Consensus 109 ~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~ 188 (275)
T PLN02664 109 QCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAK 188 (275)
T ss_pred hCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHH
Confidence 89999999999999999999888999999999999876 44544444333333233333332 368999999
Q ss_pred HcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 348 KLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 348 ~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
+.|+||+|+|.+ + .+..++......|...++..+
T Consensus 189 ~~GLv~~vv~~~--------~----~l~~~~~~~a~~ia~~~p~a~ 222 (275)
T PLN02664 189 ELGLVSRVFGSK--------E----DLDEGVRLIAEGIAAKSPLAV 222 (275)
T ss_pred HcCCCceeeCCh--------h----HHHHHHHHHHHHHHhCCHHHH
Confidence 999999999521 1 355556666667888888775
No 38
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.76 E-value=3.4e-07 Score=96.47 Aligned_cols=164 Identities=12% Similarity=0.117 Sum_probs=108.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHhc--------------------hHHHHHHHHHHHh
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG--------------------QGEAIAHNLRTMF 277 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~G--------------------qa~aIAr~L~ams 277 (773)
..+++++.+....++++.++. -.+-+|.|.-.+.++. |.+..+.. ......+.+..+.
T Consensus 27 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 106 (272)
T PRK06142 27 GNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVA 106 (272)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 356899999999999987754 4567777776554443 32221110 0112233455677
Q ss_pred CCCCcEEEEEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHH
Q 004120 278 GLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELC 347 (773)
Q Consensus 278 ~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~ 347 (773)
.+++|+|+.|.|.+.|||.-....||+++|.++++|+. +.|..+....+........+.+ ...++|++++
T Consensus 107 ~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~ 186 (272)
T PRK06142 107 DCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAE 186 (272)
T ss_pred hCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHH
Confidence 89999999999999999999988999999999998875 4454444333332222222222 2368999999
Q ss_pred HcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 004120 348 KLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 395 (773)
Q Consensus 348 ~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~ 395 (773)
+.|+||+|++. +++ +..........|...|+..+..
T Consensus 187 ~~GLv~~vv~~--------~~~----l~~~a~~~a~~ia~~~~~a~~~ 222 (272)
T PRK06142 187 KIGLVNRVYDD--------ADA----LLAAAHATAREIAAKSPLAVRG 222 (272)
T ss_pred HcCCccEecCC--------HHH----HHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999952 122 3334445556677788877543
No 39
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.76 E-value=2.3e-07 Score=97.27 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=103.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhhc-C-CcEEEEecCCCCCC-CHhHHHh-------------c--hHHHHHHHHHHHhCCCC
Q 004120 220 FGMPTPHGYRKALRMMYYADHH-G-FPIVTFIDTPGAYA-DLKSEEL-------------G--QGEAIAHNLRTMFGLKV 281 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAekf-~-LPIVtLIDTpGA~~-g~~AEe~-------------G--qa~aIAr~L~ams~l~V 281 (773)
..+++++.++...++++.++.. . +-+|.|.-+++++. |.+..+. + ....+...+..+..+++
T Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 104 (266)
T PRK05981 25 MNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPC 104 (266)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCC
Confidence 3568999999999999877653 2 55666665544433 3222111 0 11123445667888999
Q ss_pred cEEEEEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCC
Q 004120 282 PIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQI 351 (773)
Q Consensus 282 P~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGi 351 (773)
|+|++|.|.|+|||......||++||.++++|+. +.|.++...++........+.+ ...++++++++.|+
T Consensus 105 pvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Gl 184 (266)
T PRK05981 105 PIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGL 184 (266)
T ss_pred CEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCC
Confidence 9999999999999999888999999999998874 3344333332222211122222 23689999999999
Q ss_pred ceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 352 ADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 352 VD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
||.|+|.. + +..........|...|+..+
T Consensus 185 v~~vv~~~---------~----~~~~a~~~a~~l~~~~~~a~ 213 (266)
T PRK05981 185 VNRVVDDA---------E----LMAEAMKLAHELANGPTVAL 213 (266)
T ss_pred ceEeeCHh---------H----HHHHHHHHHHHHHcCCHHHH
Confidence 99999532 2 22333444556666776554
No 40
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=2.3e-07 Score=96.74 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=105.3
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh--------chHHHHHHHHHHHhCCCCcEEEEEcCC
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL--------GQGEAIAHNLRTMFGLKVPIISIVIGE 290 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~--------Gqa~aIAr~L~ams~l~VP~ISVViGe 290 (773)
.+++++.+......++.++. -.+-+|.|.-+++++. |.+..+. .....+...+..+..+++|+|+.|.|.
T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~ 106 (259)
T PRK06688 27 NALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGP 106 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCe
Confidence 56889999999888876654 4567777766554433 3221111 112334556667888999999999999
Q ss_pred CccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecCCC
Q 004120 291 GGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEPL 360 (773)
Q Consensus 291 g~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE~l 360 (773)
++|||......||+++|.++++|+. +.|.++....+........+.+. ..++++++++.|+||+|+|.
T Consensus 107 a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-- 184 (259)
T PRK06688 107 AVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPA-- 184 (259)
T ss_pred eecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecCH--
Confidence 9999999888999999999988776 34444333322222222222222 36899999999999999942
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 361 GGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 361 GgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
++ +..........|...|+..+
T Consensus 185 -------~~----l~~~a~~~a~~i~~~~~~a~ 206 (259)
T PRK06688 185 -------AE----LDAEADAQAAKLAAGPASAL 206 (259)
T ss_pred -------HH----HHHHHHHHHHHHHhCCHHHH
Confidence 22 33333444456667776654
No 41
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=3e-07 Score=96.92 Aligned_cols=162 Identities=14% Similarity=0.102 Sum_probs=107.6
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHH-----------hchHHHHHHHHHHHhCCCCcEEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEE-----------LGQGEAIAHNLRTMFGLKVPIISIV 287 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe-----------~Gqa~aIAr~L~ams~l~VP~ISVV 287 (773)
.+++++.++....+++.++. ..+-+|.|.-+++++. |.+..+ ......+...+..+..+++|+|+.|
T Consensus 34 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 113 (268)
T PRK07327 34 NAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAI 113 (268)
T ss_pred CCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 46889999998888876654 4455666655544433 222111 0112223455667788999999999
Q ss_pred cCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeec
Q 004120 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIP 357 (773)
Q Consensus 288 iGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIp 357 (773)
.|.|+|||......||++||.++++|+. +.|.++....+........+.+. ..++|+++++.|+||+|+|
T Consensus 114 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 193 (268)
T PRK07327 114 HGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVD 193 (268)
T ss_pred cCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceecC
Confidence 9999999999988999999999998875 44444444444333222233332 3789999999999999994
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 004120 358 EPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 395 (773)
Q Consensus 358 E~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~ 395 (773)
. + .+..........|...|+..+..
T Consensus 194 ~---------~----~l~~~a~~~a~~la~~~~~a~~~ 218 (268)
T PRK07327 194 D---------D----ELLPKALEVAERLAAGSQTAIRW 218 (268)
T ss_pred H---------H----HHHHHHHHHHHHHHcCCHHHHHH
Confidence 2 2 23334444566788888777543
No 42
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=3e-07 Score=96.29 Aligned_cols=160 Identities=8% Similarity=0.049 Sum_probs=106.3
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCC-CCC-CCHhHHHh---------chHHHHHHHHHHHhCCCCcEEEEEc
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTP-GAY-ADLKSEEL---------GQGEAIAHNLRTMFGLKVPIISIVI 288 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTp-GA~-~g~~AEe~---------Gqa~aIAr~L~ams~l~VP~ISVVi 288 (773)
.+++++.+....++++.++. -.+-+|.|.-++ .++ .|.+.... .........+..+..+++|+|+.|.
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 103 (258)
T PRK09076 24 NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN 103 (258)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 46889999999999987664 455666665544 233 23322111 1122234456678889999999999
Q ss_pred CCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecC
Q 004120 289 GEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPE 358 (773)
Q Consensus 289 Geg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE 358 (773)
|.++|||.-....||+++|.++++|+. +.|.++.+..+........+.+. ..++++++++.|+||+|+|.
T Consensus 104 G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 183 (258)
T PRK09076 104 GYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEK 183 (258)
T ss_pred CEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecCc
Confidence 999999999888999999999998875 44554444433333222223222 36899999999999999953
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 359 PLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 359 ~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
. .+.+........|...++..+
T Consensus 184 ~-------------~l~~~a~~~a~~l~~~~~~a~ 205 (258)
T PRK09076 184 G-------------EAREAALALAQKVANQSPSAV 205 (258)
T ss_pred h-------------hHHHHHHHHHHHHHhCCHHHH
Confidence 2 122333444567777777765
No 43
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=3.2e-07 Score=96.20 Aligned_cols=163 Identities=12% Similarity=0.113 Sum_probs=107.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCC-C-CCCCHhHHHhc---------hHHHHHHHHHHHhCCCCcEEEEE
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTP-G-AYADLKSEELG---------QGEAIAHNLRTMFGLKVPIISIV 287 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTp-G-A~~g~~AEe~G---------qa~aIAr~L~ams~l~VP~ISVV 287 (773)
..+++++.+......++.++. -.+-+|.|.-++ . |-.|.+..+.. ....+...+..+..+++|+|+.|
T Consensus 28 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 107 (256)
T PRK06143 28 LNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARI 107 (256)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 356889999999999887653 445566665554 2 33343222210 11223344566778999999999
Q ss_pred cCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeec
Q 004120 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIP 357 (773)
Q Consensus 288 iGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIp 357 (773)
.|.+.|||+.....||+++|.++++|+. + |.+.....+........+.+. ..++|+++++.|+||+|+|
T Consensus 108 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 186 (256)
T PRK06143 108 PGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVP 186 (256)
T ss_pred CCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecC
Confidence 9999999999888999999999988764 3 322233333222222222222 3689999999999999994
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004120 358 EPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKH 396 (773)
Q Consensus 358 E~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~ 396 (773)
. + .+..........|...|+..+...
T Consensus 187 ~---------~----~l~~~a~~~a~~la~~~~~a~~~~ 212 (256)
T PRK06143 187 L---------A----ELDAAVERLAASLAGCGPQALRQQ 212 (256)
T ss_pred H---------H----HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2 2 345556666677888888775443
No 44
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.74 E-value=2.8e-07 Score=96.35 Aligned_cols=160 Identities=13% Similarity=0.105 Sum_probs=103.8
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCC-CCCC-CHhHHHh---------chHHHHHHHHHHHhCCCCcEEEEEc
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTP-GAYA-DLKSEEL---------GQGEAIAHNLRTMFGLKVPIISIVI 288 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTp-GA~~-g~~AEe~---------Gqa~aIAr~L~ams~l~VP~ISVVi 288 (773)
.+++++.++...++++.++. -.+-+|.|.-++ +++. |.+..+. .........+..+..+++|+|+.|.
T Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 26 NALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 46899999999998887654 445556555444 3332 3222111 1112233456678889999999999
Q ss_pred CCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCCceeeecC
Q 004120 289 GEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGVIPE 358 (773)
Q Consensus 289 Geg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGiVD~IIpE 358 (773)
|.+.|||......||++||.++++|++ +.|..+....+........+.+ ...++++++++.|+||+|+|.
T Consensus 106 G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 185 (260)
T PRK05809 106 GFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEP 185 (260)
T ss_pred CeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccCh
Confidence 999999999888999999999998876 4455444443332222222222 236899999999999999942
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 359 PLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 359 ~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
++ +..........|...|+..+
T Consensus 186 ---------~~----l~~~a~~~a~~la~~~~~a~ 207 (260)
T PRK05809 186 ---------EK----LMEEAKALANKIAANAPIAV 207 (260)
T ss_pred ---------HH----HHHHHHHHHHHHHhCCHHHH
Confidence 22 33444445556667776654
No 45
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.74 E-value=2e-07 Score=98.72 Aligned_cols=161 Identities=14% Similarity=0.144 Sum_probs=108.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh------c---hH----HHHHHHHHHHhCCCCcEE
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------G---QG----EAIAHNLRTMFGLKVPII 284 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~------G---qa----~aIAr~L~ams~l~VP~I 284 (773)
..+++++.+....++++.++. -.+-+|.|.-+++++. |.+..+. + .. ..+...+..+..+++|+|
T Consensus 29 ~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 108 (275)
T PRK09120 29 RNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTI 108 (275)
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 456899999999999987754 4556676666554443 3221110 0 01 112234566788999999
Q ss_pred EEEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCcee
Q 004120 285 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADG 354 (773)
Q Consensus 285 SVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~ 354 (773)
+.|.|.+.|||......||++|+.++++|+. +.|.++...++........+.+. ..++|+++++.|+||+
T Consensus 109 Aav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~ 188 (275)
T PRK09120 109 AMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNE 188 (275)
T ss_pred EEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcce
Confidence 9999999999999988999999999999876 44555544433332222333332 3689999999999999
Q ss_pred eecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 355 VIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 355 IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
|+|.. .|..........|...|+..+
T Consensus 189 vv~~~-------------~l~~~a~~~a~~la~~~p~a~ 214 (275)
T PRK09120 189 SVPLA-------------QLRARTRELAAKLLEKNPVVL 214 (275)
T ss_pred ecCHH-------------HHHHHHHHHHHHHHhCCHHHH
Confidence 99532 344555555677777787765
No 46
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.73 E-value=3.1e-07 Score=96.80 Aligned_cols=162 Identities=10% Similarity=0.096 Sum_probs=107.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhhc-CCcEEEEecCCC-CCC-CHhHHHh-----------chHHHHHHHHHHHhCCCCcEEE
Q 004120 220 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPG-AYA-DLKSEEL-----------GQGEAIAHNLRTMFGLKVPIIS 285 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAekf-~LPIVtLIDTpG-A~~-g~~AEe~-----------Gqa~aIAr~L~ams~l~VP~IS 285 (773)
..+++++.+.....+++.+++. .+=+|.|.-+++ +++ |.+.... ........++..+..+++|+|+
T Consensus 32 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa 111 (269)
T PRK06127 32 HNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIA 111 (269)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 3568999999999999877653 444565655442 332 3222111 1112233456678889999999
Q ss_pred EEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceee
Q 004120 286 IVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGV 355 (773)
Q Consensus 286 VViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~I 355 (773)
.|.|.++|||+.....||+++|.++++|++ +.|.++....+........+.+. ..++++++++.|+||+|
T Consensus 112 av~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v 191 (269)
T PRK06127 112 CIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRV 191 (269)
T ss_pred EECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEe
Confidence 999999999999888999999999998876 33544444333332223333332 36899999999999999
Q ss_pred ecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 356 IPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 356 IpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
+|. + .+..........+...|+..+.
T Consensus 192 v~~---------~----~l~~~a~~~a~~l~~~~~~a~~ 217 (269)
T PRK06127 192 TAA---------D----DLETALADYAATIAGNAPLTLR 217 (269)
T ss_pred eCH---------H----HHHHHHHHHHHHHHhCCHHHHH
Confidence 942 2 2444455555666677776643
No 47
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=98.73 E-value=3.7e-07 Score=95.41 Aligned_cols=161 Identities=13% Similarity=0.126 Sum_probs=106.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh-------chHHHHHHHHHHHhCCCCcEEEEEcCC
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL-------GQGEAIAHNLRTMFGLKVPIISIVIGE 290 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~-------Gqa~aIAr~L~ams~l~VP~ISVViGe 290 (773)
..+++++.+....+++..++. ..+-+|.|.-+++++. |.+..+. .....+..++..+..+++|+|+.|.|.
T Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~ 104 (257)
T PRK05862 25 LNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGY 104 (257)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence 356899999999999976653 4566777776654433 3221111 011233445667888999999999999
Q ss_pred CccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecCCC
Q 004120 291 GGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEPL 360 (773)
Q Consensus 291 g~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE~l 360 (773)
+.|||......||++++.++++|+. +.|.++....+........+.+. ..++++++++.|+||+|+|+
T Consensus 105 a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-- 182 (257)
T PRK05862 105 ALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPA-- 182 (257)
T ss_pred EeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCH--
Confidence 9999999888999999999998875 44554444333332222222222 36899999999999999953
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 361 GGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 361 GgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
++ +..........|...++..+
T Consensus 183 -------~~----l~~~a~~~a~~l~~~~~~a~ 204 (257)
T PRK05862 183 -------DK----LLDEALAAATTIASFSLPAV 204 (257)
T ss_pred -------hH----HHHHHHHHHHHHHhCCHHHH
Confidence 22 22333334455666676664
No 48
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.73 E-value=3.3e-07 Score=95.94 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=107.4
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh--------ch----HHHHHHHHHHHhCCCCcEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL--------GQ----GEAIAHNLRTMFGLKVPIISI 286 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~--------Gq----a~aIAr~L~ams~l~VP~ISV 286 (773)
.+++++.+....++++.++. -.+.+|.|.-.++++. |.+..+. .. ...+...+..+..+++|+|+.
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK05995 26 NAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIAR 105 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEE
Confidence 46899999999999987654 4566777766554433 3221110 01 123445667788899999999
Q ss_pred EcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeee
Q 004120 287 VIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVI 356 (773)
Q Consensus 287 ViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~II 356 (773)
|.|.+.|||+-....||++||.++++|++ +.|.++...+.+ ......+.+. ..++|+++++.|+||+|+
T Consensus 106 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~-~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 184 (262)
T PRK05995 106 VHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPYVIR-AMGERAARRYFLTAERFDAAEALRLGLVHEVV 184 (262)
T ss_pred ECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHHHHH-HhCHHHHHHHHHcCCccCHHHHHHcCCCCeec
Confidence 99999999999988999999999998876 445544444332 2222223222 368999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 357 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 357 pE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
|. + .+..........|...|+..+.
T Consensus 185 ~~---------~----~l~~~a~~~a~~la~~~~~a~~ 209 (262)
T PRK05995 185 PA---------E----ALDAKVDELLAALVANSPQAVR 209 (262)
T ss_pred CH---------H----HHHHHHHHHHHHHHhCCHHHHH
Confidence 42 2 2334444555666677776653
No 49
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.73 E-value=2.6e-07 Score=97.04 Aligned_cols=161 Identities=11% Similarity=0.130 Sum_probs=103.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC--CCC-CHhHHHh--------chHHHHHHHHHHHhCCCCcEEEEEc
Q 004120 220 FGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG--AYA-DLKSEEL--------GQGEAIAHNLRTMFGLKVPIISIVI 288 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpG--A~~-g~~AEe~--------Gqa~aIAr~L~ams~l~VP~ISVVi 288 (773)
..+++++.+.....+++.++...+-+|.|.-.+| ++. |.+..+. .....+.+.+..+..+++|+|+.|.
T Consensus 25 ~Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~ 104 (261)
T PRK11423 25 RNALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVE 104 (261)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 3568999999999998877665555555543221 222 3222211 1122334456678889999999999
Q ss_pred CCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCCceeeecC
Q 004120 289 GEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGVIPE 358 (773)
Q Consensus 289 Geg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGiVD~IIpE 358 (773)
|.+.|||+-....||++||.++++|+. +.|.++....+........+.+ ...++|+++++.|+||.|+|.
T Consensus 105 G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~ 184 (261)
T PRK11423 105 GSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEV 184 (261)
T ss_pred cEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcccCH
Confidence 999999998888899999999998875 3444443333322222222222 236899999999999999942
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 359 PLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 359 ~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
+ .+........+.|...++..+
T Consensus 185 ---------~----~l~~~a~~~a~~l~~~~~~a~ 206 (261)
T PRK11423 185 ---------E----ELEDFTLQMAHHISEKAPLAI 206 (261)
T ss_pred ---------H----HHHHHHHHHHHHHHhcCHHHH
Confidence 2 233344444566777777664
No 50
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.72 E-value=3.3e-07 Score=95.94 Aligned_cols=163 Identities=13% Similarity=0.107 Sum_probs=107.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCC-CCC-CHhHHHh---------chHHHHHHHHHHHhCCCCcEEEEE
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPG-AYA-DLKSEEL---------GQGEAIAHNLRTMFGLKVPIISIV 287 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpG-A~~-g~~AEe~---------Gqa~aIAr~L~ams~l~VP~ISVV 287 (773)
..+++.+.++...++++.++. -.+-+|.|.-+++ ++. |.+..+. .....+...+..+..+++|+|+.|
T Consensus 25 ~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 104 (260)
T PRK07657 25 ANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAI 104 (260)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 356899999999999976654 4556677766564 333 3222111 112233455667788999999999
Q ss_pred cCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeec
Q 004120 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIP 357 (773)
Q Consensus 288 iGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIp 357 (773)
.|.++|||+.....||+++|.++++|++ +.|.++.+...........+.+. ..++++++++.|+||.|+|
T Consensus 105 ~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 184 (260)
T PRK07657 105 NGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVP 184 (260)
T ss_pred cCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeecC
Confidence 9999999999999999999999988875 33444433322222222222222 3689999999999999994
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 004120 358 EPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 395 (773)
Q Consensus 358 E~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~ 395 (773)
. + .+..........|...++..+..
T Consensus 185 ~---------~----~l~~~a~~~a~~l~~~~~~a~~~ 209 (260)
T PRK07657 185 A---------H----LLEEKAIEIAEKIASNGPIAVRQ 209 (260)
T ss_pred H---------H----HHHHHHHHHHHHHHhCCHHHHHH
Confidence 3 2 23444455556677788777533
No 51
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.72 E-value=3.7e-07 Score=95.43 Aligned_cols=162 Identities=12% Similarity=0.080 Sum_probs=106.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh-------chHHHHHHHHHHHhCCCCcEEEEEcCC
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL-------GQGEAIAHNLRTMFGLKVPIISIVIGE 290 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~-------Gqa~aIAr~L~ams~l~VP~ISVViGe 290 (773)
..+++++.+....+.++.++. ..+-+|.|.-.+.++. |.+..+. .........+..+..+++|+|+.|.|.
T Consensus 23 ~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 102 (255)
T PRK09674 23 RNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGY 102 (255)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 467899999999999987764 4556666655444433 3222211 011123345667788999999999999
Q ss_pred CccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCCceeeecCCC
Q 004120 291 GGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGVIPEPL 360 (773)
Q Consensus 291 g~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGiVD~IIpE~l 360 (773)
+.|||......||+++|.++++|+. +.|.++....+........+.+ ...++++++++.|+||.|+|.
T Consensus 103 a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-- 180 (255)
T PRK09674 103 ALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPP-- 180 (255)
T ss_pred eehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecCh--
Confidence 9999999989999999999998875 3344333322222222222222 236899999999999999953
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 361 GGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 361 GgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
+ .+..........|...|+..+.
T Consensus 181 -------~----~~~~~a~~~a~~l~~~~~~a~~ 203 (255)
T PRK09674 181 -------E----LTLERALQLASKIARHSPLALR 203 (255)
T ss_pred -------H----HHHHHHHHHHHHHHhCCHHHHH
Confidence 2 2334445556677777776653
No 52
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.71 E-value=4.2e-07 Score=95.16 Aligned_cols=161 Identities=16% Similarity=0.225 Sum_probs=107.3
Q ss_pred CCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCC-CC-CCHhHHHh-----c---hHHHHHHHHHHHhCCCCcEEEEEc
Q 004120 220 FGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPG-AY-ADLKSEEL-----G---QGEAIAHNLRTMFGLKVPIISIVI 288 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAe-kf~LPIVtLIDTpG-A~-~g~~AEe~-----G---qa~aIAr~L~ams~l~VP~ISVVi 288 (773)
..+++.+.+....++++.++ ...+-+|.|.-+++ ++ .|.+..+. + ....+...+..+..+++|+|+.|.
T Consensus 23 ~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 102 (256)
T TIGR03210 23 MNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQ 102 (256)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 35688999999998887765 34455666655442 33 23322211 0 111233455677889999999999
Q ss_pred CCCccchhhhccccceeeeecCCeeee-------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeec
Q 004120 289 GEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIP 357 (773)
Q Consensus 289 Geg~GGGAlA~g~aD~Vlm~e~A~~sV-------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIp 357 (773)
|.+.|||......||+++|.++++|+. .+|.+....+ ........+.+. ..++|+++++.|+||+|+|
T Consensus 103 G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l-~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~ 181 (256)
T TIGR03210 103 GYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALL-ARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVP 181 (256)
T ss_pred CEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHH-HHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeC
Confidence 999999999999999999999998876 3344433333 222222223222 3689999999999999994
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 358 EPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 358 E~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
. + .+........++|...|+..+.
T Consensus 182 ~---------~----~l~~~a~~~a~~ia~~~~~a~~ 205 (256)
T TIGR03210 182 H---------D----QLDAEVQKWCDEIVEKSPTAIA 205 (256)
T ss_pred H---------H----HHHHHHHHHHHHHHhCCHHHHH
Confidence 2 2 3445566666778888887753
No 53
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.71 E-value=3.7e-07 Score=95.38 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=104.5
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh------ch---HHHHHHHH-HHHhCCCCcEEEEEc
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------GQ---GEAIAHNL-RTMFGLKVPIISIVI 288 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~------Gq---a~aIAr~L-~ams~l~VP~ISVVi 288 (773)
.+++++.+....++++.++. -.+-+|.|.-.++++. |.+..+. +. .....+.+ ..+..+++|+|+.|.
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 100 (255)
T PRK06563 21 NAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQ 100 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEc
Confidence 56899999999999976654 4556666666554443 2221111 00 01111222 246778999999999
Q ss_pred CCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecC
Q 004120 289 GEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPE 358 (773)
Q Consensus 289 Geg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE 358 (773)
|.|.|||......||++||.++++|+. +.|.++....+........+.+. ..++++++++.|+||+|+|.
T Consensus 101 G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 180 (255)
T PRK06563 101 GYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPP 180 (255)
T ss_pred CeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCH
Confidence 999999999999999999999998876 44554444433333222333332 36899999999999999942
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 359 PLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 359 ~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
+ .+..........|...|+..+
T Consensus 181 ---------~----~l~~~a~~~a~~la~~~~~a~ 202 (255)
T PRK06563 181 ---------G----EQLERAIELAERIARAAPLGV 202 (255)
T ss_pred ---------H----HHHHHHHHHHHHHHhcCHHHH
Confidence 2 233334444566777777765
No 54
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.70 E-value=5.5e-07 Score=95.36 Aligned_cols=162 Identities=14% Similarity=0.073 Sum_probs=104.9
Q ss_pred CCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-CHhHHHh-------------chHHHHHHHHHHHhCCCCcEE
Q 004120 220 FGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEEL-------------GQGEAIAHNLRTMFGLKVPII 284 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAe-kf~LPIVtLIDTpGA~~-g~~AEe~-------------Gqa~aIAr~L~ams~l~VP~I 284 (773)
..+++++.+.....+++.++ .-.+-+|.|.-++.++. |.+..+. .........+..+..+++|+|
T Consensus 38 ~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 117 (277)
T PRK08258 38 KNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPII 117 (277)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 35688999988888887665 34555666655443332 2222111 111222345667888999999
Q ss_pred EEEcCCCccchhhhccccceeeeecCCeeee-------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCce
Q 004120 285 SIVIGEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIAD 353 (773)
Q Consensus 285 SVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV-------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD 353 (773)
++|.|.|+|||.-....||++||.++++|++ .+|.++...++........+.+. ..++++++++.|+||
T Consensus 118 AaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~ 197 (277)
T PRK08258 118 AAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFN 197 (277)
T ss_pred EEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCc
Confidence 9999999999999888999999999988875 22343333333322222222222 368999999999999
Q ss_pred eeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 354 GVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 354 ~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
+|+|. + .+..........|...|+..+.
T Consensus 198 ~vv~~---------~----~l~~~a~~~a~~la~~~~~a~~ 225 (277)
T PRK08258 198 RLVEP---------E----ELLAEAQALARRLAAGPTFAHG 225 (277)
T ss_pred EecCH---------H----HHHHHHHHHHHHHHhCCHHHHH
Confidence 99942 2 2444455555677777777653
No 55
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.70 E-value=7e-07 Score=93.44 Aligned_cols=160 Identities=15% Similarity=0.193 Sum_probs=103.9
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHH------------hchHHHHHHHHHHHhCCCCcEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEE------------LGQGEAIAHNLRTMFGLKVPIISI 286 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe------------~Gqa~aIAr~L~ams~l~VP~ISV 286 (773)
.+++++.++...+.++.++. -.+-+|.|.-.+.++. |.+..+ ..........+..+..+++|+|+.
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAa 104 (260)
T PRK07511 25 NALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAA 104 (260)
T ss_pred cCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 46889999999999987764 4455666644333332 221111 111223345566778899999999
Q ss_pred EcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCCceeee
Q 004120 287 VIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGVI 356 (773)
Q Consensus 287 ViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGiVD~II 356 (773)
|-|.+.|||......||+++|.+++.|++ +.|.++....+........+.+ ...++++++++.|+||.|+
T Consensus 105 v~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 184 (260)
T PRK07511 105 VEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLA 184 (260)
T ss_pred ECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEee
Confidence 99999999999888999999999998875 4455444443332222222222 2468999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 357 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 357 pE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
+. ++ +..........|...++..+
T Consensus 185 ~~---------~~----~~~~a~~~a~~l~~~~~~~~ 208 (260)
T PRK07511 185 EP---------GQ----ALAEALALADQLAAGSPNAL 208 (260)
T ss_pred Cc---------hH----HHHHHHHHHHHHHhCCHHHH
Confidence 42 22 22223344556777777664
No 56
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.70 E-value=5.7e-07 Score=94.42 Aligned_cols=160 Identities=12% Similarity=0.155 Sum_probs=106.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh------c------hHHHHHHHHHHHhCCCCcEEE
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------G------QGEAIAHNLRTMFGLKVPIIS 285 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~------G------qa~aIAr~L~ams~l~VP~IS 285 (773)
..+++++.++...++++.++. -.+-+|.|.-++.++. |.+..+. + ....+...+..+..+++|+|+
T Consensus 26 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 105 (262)
T PRK07468 26 HNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIG 105 (262)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 356899999999999987764 4455666655443333 3221110 0 112234456678889999999
Q ss_pred EEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceee
Q 004120 286 IVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGV 355 (773)
Q Consensus 286 VViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~I 355 (773)
.|.|.+.|||......||++||.++++|+. +.|.++.+.+.+. .....+.+. ..++++++++.|+||+|
T Consensus 106 av~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~a~~lll~g~~~~a~eA~~~Glv~~v 184 (262)
T PRK07468 106 RIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANARRVFMSARLFDAEEAVRLGLLSRV 184 (262)
T ss_pred EECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHHHHHHHHHhCCccCHHHHHHcCCccee
Confidence 999999999999888999999999988775 3455444433332 222333332 37899999999999999
Q ss_pred ecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 356 IPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 356 IpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
+|. + .+...+......+...|+..+
T Consensus 185 ~~~---------~----~l~~~~~~~a~~l~~~~~~a~ 209 (262)
T PRK07468 185 VPA---------E----RLDAAVEAEVTPYLSCAPGAV 209 (262)
T ss_pred cCH---------H----HHHHHHHHHHHHHHhcCHHHH
Confidence 942 1 244445555566667777664
No 57
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.70 E-value=5.3e-07 Score=93.83 Aligned_cols=137 Identities=11% Similarity=0.047 Sum_probs=93.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC-CHhHH----HhchHHHHHHHHHHHhCCCCcEEEEEcCCCccc
Q 004120 220 FGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYA-DLKSE----ELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSG 294 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~-g~~AE----e~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GG 294 (773)
..+++++.+....++++.++...+-+|.|.-.+.++. |.+.. .......+.+.+..+..+++|+|+.|.|.+.||
T Consensus 21 ~Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~Gg 100 (243)
T PRK07854 21 RNALNAELCEELREAVRKAVDESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGA 100 (243)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Confidence 3568999999999999877655666666654443322 21111 111223344566678889999999999999999
Q ss_pred hhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeee
Q 004120 295 GALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVI 356 (773)
Q Consensus 295 GAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~II 356 (773)
|......||+++|.++++|+. +.|..+....+........+.+. ..++|+++++.|+||+|.
T Consensus 101 G~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~ 172 (243)
T PRK07854 101 GLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIG 172 (243)
T ss_pred HHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccccc
Confidence 999888999999999999875 44544444333222222223222 368999999999999996
No 58
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.69 E-value=3.4e-07 Score=95.96 Aligned_cols=161 Identities=14% Similarity=0.156 Sum_probs=104.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC-CHhHHHh----------chHHHHHHHHHHHhCCCCcEEEEEc
Q 004120 220 FGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYA-DLKSEEL----------GQGEAIAHNLRTMFGLKVPIISIVI 288 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~-g~~AEe~----------Gqa~aIAr~L~ams~l~VP~ISVVi 288 (773)
..+++++.+....++++.+....+-+|.|.-.++++. |.+..+. .....+.+.+..+..+++|+|+.|.
T Consensus 27 ~Nal~~~~~~~l~~~l~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~ 106 (260)
T PRK07659 27 LNALDEPMLKELLQALKEVAESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIH 106 (260)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 3568899999999999877555666677766554433 3222111 1122334456677889999999999
Q ss_pred CCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecC
Q 004120 289 GEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPE 358 (773)
Q Consensus 289 Geg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE 358 (773)
|.+.|||.-....||+++|.++++|++ +.|.++.............+.+. ..++|+++++.|+||+|+ +
T Consensus 107 G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~ 185 (260)
T PRK07659 107 GPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-G 185 (260)
T ss_pred CceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-h
Confidence 999999999888999999999998775 33332222222211111222222 368999999999999999 2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 359 PLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 359 ~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
. .+........+.|...|+..+.
T Consensus 186 ~-------------~~~~~a~~~a~~l~~~~~~a~~ 208 (260)
T PRK07659 186 G-------------DFQTAAKQKISEWLQKPLKAMI 208 (260)
T ss_pred h-------------HHHHHHHHHHHHHHhCCHHHHH
Confidence 2 1233344445667777776643
No 59
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.69 E-value=8.3e-07 Score=91.32 Aligned_cols=161 Identities=13% Similarity=0.133 Sum_probs=106.3
Q ss_pred CCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC-CHhHHHh--------chHHHHHHHHHHHhCCCCcEEEEEcCCC
Q 004120 221 GMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYA-DLKSEEL--------GQGEAIAHNLRTMFGLKVPIISIVIGEG 291 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~-g~~AEe~--------Gqa~aIAr~L~ams~l~VP~ISVViGeg 291 (773)
.+++++.+......++.++ ...-+|.+.-.++++. |.+..+. .......+.+..+..+++|+|+.|.|.+
T Consensus 24 Nal~~~~~~~l~~~l~~~~-~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a 102 (229)
T PRK06213 24 NALSPAMIDALNAALDQAE-DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGHA 102 (229)
T ss_pred CCCCHHHHHHHHHHHHHhh-ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCee
Confidence 4689999999999998776 4556777766654443 3222211 1122334456677889999999999999
Q ss_pred ccchhhhccccceeeeecC-Ceeee-------eCHHHHHHHhhhhccCchHH----HHHhcccHHHHHHcCCceeeecCC
Q 004120 292 GSGGALAIGCANKLLMLEN-AVFYV-------ASPEACAAILWKSAKASPKA----AEKLKITGSELCKLQIADGVIPEP 359 (773)
Q Consensus 292 ~GGGAlA~g~aD~Vlm~e~-A~~sV-------isPEgaAsIl~rd~~~a~ea----Ae~lkitA~dL~~lGiVD~IIpE~ 359 (773)
+|||......||+++|.++ ++|++ ..|.+....+.+.. ....+ .....++++++++.|+||+|+|+
T Consensus 103 ~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~-g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~- 180 (229)
T PRK06213 103 IAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRL-TPSAFQRAVINAEMFDPEEAVAAGFLDEVVPP- 180 (229)
T ss_pred eHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHc-CHHHHHHHHHcCcccCHHHHHHCCCceeccCh-
Confidence 9999998889999999999 87765 23444333332211 11111 12236899999999999999942
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004120 360 LGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKH 396 (773)
Q Consensus 360 lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~ 396 (773)
++ +..........|...|+..+...
T Consensus 181 --------~~----l~~~a~~~a~~la~~~~~a~~~~ 205 (229)
T PRK06213 181 --------EQ----LLARAQAAARELAGLNMGAHAAT 205 (229)
T ss_pred --------HH----HHHHHHHHHHHHhcCCHHHHHHH
Confidence 22 33445555566777787775433
No 60
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.69 E-value=5.2e-07 Score=94.62 Aligned_cols=160 Identities=15% Similarity=0.149 Sum_probs=105.8
Q ss_pred CCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCC--CCCCHhHHHhc--------hHHHHHHHHHHHhCCCCcEEEEEcC
Q 004120 221 GMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPG--AYADLKSEELG--------QGEAIAHNLRTMFGLKVPIISIVIG 289 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAe-kf~LPIVtLIDTpG--A~~g~~AEe~G--------qa~aIAr~L~ams~l~VP~ISVViG 289 (773)
.+++++.+....++++.++ ...+-+|.|.-+++ |-.|.+..+.. ........+.++..+++|+|+.|.|
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 103 (261)
T PRK03580 24 NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNG 103 (261)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEECC
Confidence 5688999998888887665 34566666665553 33333322210 0111233566788899999999999
Q ss_pred CCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecCC
Q 004120 290 EGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEP 359 (773)
Q Consensus 290 eg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE~ 359 (773)
.|+|||......||++||.++++|+. +.|..+....+........+.+. ..++++++++.|+||+|+|.
T Consensus 104 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~- 182 (261)
T PRK03580 104 YAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQ- 182 (261)
T ss_pred eeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecCH-
Confidence 99999999989999999999998875 44554444333332222222222 36899999999999999942
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 360 LGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 360 lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
+ .+..........|...|+..+
T Consensus 183 --------~----~l~~~a~~~a~~la~~~~~a~ 204 (261)
T PRK03580 183 --------A----ELMDRARELAQQLVNSAPLAI 204 (261)
T ss_pred --------h----HHHHHHHHHHHHHHhCCHHHH
Confidence 2 233344444566777777665
No 61
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=98.68 E-value=7.1e-07 Score=94.04 Aligned_cols=160 Identities=13% Similarity=0.214 Sum_probs=108.1
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh------------chHHHHHHHHHHHhCCCCcEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------------GQGEAIAHNLRTMFGLKVPIISI 286 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~------------Gqa~aIAr~L~ams~l~VP~ISV 286 (773)
.+++++.+....++++.++. -.+-+|.|.-+++++. |.+..+. .....+.+.+..+..+++|+|+.
T Consensus 28 Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (265)
T PRK05674 28 NAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAV 107 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEE
Confidence 46889999999999887654 3445666655554433 3221111 01123445677788899999999
Q ss_pred EcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeee
Q 004120 287 VIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVI 356 (773)
Q Consensus 287 ViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~II 356 (773)
|.|.|.|||......||+++|.++++|++ +.|.++...+.+. .....+.+. ..++++++++.|+||+|+
T Consensus 108 V~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~l~~~-vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 186 (265)
T PRK05674 108 VQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPFVVKA-IGERAARRYALTAERFDGRRARELGLLAESY 186 (265)
T ss_pred EcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHHHHHH-hCHHHHHHHHHhCcccCHHHHHHCCCcceec
Confidence 99999999999999999999999999886 5565544443322 222222222 368999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 357 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 357 pE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
|. + .+.........+|...|+..+.
T Consensus 187 ~~---------~----~l~~~a~~~a~~la~~~p~a~~ 211 (265)
T PRK05674 187 PA---------A----ELEAQVEAWIANLLLNSPQALR 211 (265)
T ss_pred CH---------H----HHHHHHHHHHHHHHhcCHHHHH
Confidence 42 2 3444555556677777877653
No 62
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.68 E-value=6.2e-07 Score=92.33 Aligned_cols=163 Identities=13% Similarity=0.092 Sum_probs=108.4
Q ss_pred CCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-CHhHHHh------c---hHHHHHHHHHHHhCCCCcEEEEEcC
Q 004120 221 GMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEEL------G---QGEAIAHNLRTMFGLKVPIISIVIG 289 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAe-kf~LPIVtLIDTpGA~~-g~~AEe~------G---qa~aIAr~L~ams~l~VP~ISVViG 289 (773)
.+++++........++.++ .-++-+|.|.-.++++. |.+..+. . ......+.+..+..+++|+|+.|.|
T Consensus 29 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G 108 (222)
T PRK05869 29 NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITG 108 (222)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 4689999999998887554 46667776665544443 2221110 0 1122344566788899999999999
Q ss_pred CCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCCceeeecCC
Q 004120 290 EGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGVIPEP 359 (773)
Q Consensus 290 eg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGiVD~IIpE~ 359 (773)
.++|||......||+++|.++++|+. +.|.++....+........+.+ ...+++++++++|+||+|+|.
T Consensus 109 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~- 187 (222)
T PRK05869 109 YALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAP- 187 (222)
T ss_pred EeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCc-
Confidence 99999999999999999999988776 3344443333333222222222 236899999999999999942
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004120 360 LGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKH 396 (773)
Q Consensus 360 lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~ 396 (773)
+ .+..........|...|+..+...
T Consensus 188 --------~----~l~~~a~~~a~~ia~~~~~a~~~~ 212 (222)
T PRK05869 188 --------D----DVYDAAAAWARRFLDGPPHALAAA 212 (222)
T ss_pred --------h----HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2 233444556667888888776433
No 63
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.68 E-value=6.2e-07 Score=93.84 Aligned_cols=161 Identities=12% Similarity=0.078 Sum_probs=105.7
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCC-CC-CCHhHHHh-------------chHHHHHHHHHHHhCCCCcEE
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPG-AY-ADLKSEEL-------------GQGEAIAHNLRTMFGLKVPII 284 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpG-A~-~g~~AEe~-------------Gqa~aIAr~L~ams~l~VP~I 284 (773)
.+++++.++...++++.++. -.+-+|.|.-+++ ++ .|.+..+. .......+.+..+..+++|+|
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (260)
T PRK05980 25 NALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVI 104 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 46899999999999987764 4566776666552 33 33332211 011112234556778999999
Q ss_pred EEEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCcee
Q 004120 285 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADG 354 (773)
Q Consensus 285 SVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~ 354 (773)
+.|.|.|.|||......||++||.++++|+. +.|.+.....+........+.+. ..++++++++.|+||+
T Consensus 105 aav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~ 184 (260)
T PRK05980 105 AAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNA 184 (260)
T ss_pred EEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCc
Confidence 9999999999999888999999999998875 44554444333322222233322 3689999999999999
Q ss_pred eecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 355 VIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 355 IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
|+|. ++ +..........|...++..+.
T Consensus 185 vv~~---------~~----l~~~a~~~a~~la~~~p~a~~ 211 (260)
T PRK05980 185 VVPH---------EE----LLPAARALARRIIRHSPVAVA 211 (260)
T ss_pred ccCH---------HH----HHHHHHHHHHHHHhCCHHHHH
Confidence 9942 22 333344445567777776643
No 64
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=98.68 E-value=9e-07 Score=92.46 Aligned_cols=163 Identities=12% Similarity=0.086 Sum_probs=108.8
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh------ch-------HHHHHHHHHHHhCCCCcEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------GQ-------GEAIAHNLRTMFGLKVPIIS 285 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~------Gq-------a~aIAr~L~ams~l~VP~IS 285 (773)
..++++.++....+++.++. ..+-+|.|.-+++++. |.+..+. +. .....+.+..+..+++|+|+
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 103 (255)
T PRK07260 24 NGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM 103 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 45899999999999886654 4456676766655443 3322211 01 11233455677889999999
Q ss_pred EEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceee
Q 004120 286 IVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGV 355 (773)
Q Consensus 286 VViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~I 355 (773)
.|.|.+.|||+-....||++||.+++.|+. +.|..+...++........+.+. ..++|+++++.|+||+|
T Consensus 104 av~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~v 183 (255)
T PRK07260 104 CVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRV 183 (255)
T ss_pred EecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCccee
Confidence 999999999999888999999999998875 33444443333322222222222 37899999999999999
Q ss_pred ecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004120 356 IPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKH 396 (773)
Q Consensus 356 IpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~ 396 (773)
++ ++ .+..........|...++..+...
T Consensus 184 v~---------~~----~l~~~a~~~a~~la~~~~~a~~~~ 211 (255)
T PRK07260 184 AE---------SE----KLEKTCEQLLKKLRRGSSNSYAAI 211 (255)
T ss_pred cC---------Hh----HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 94 22 344555556677888888775443
No 65
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.68 E-value=5.4e-07 Score=94.58 Aligned_cols=162 Identities=15% Similarity=0.143 Sum_probs=103.1
Q ss_pred CCCC-HHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh---------------c-hHHHHHHHHHHHhCCCC
Q 004120 221 GMPT-PHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL---------------G-QGEAIAHNLRTMFGLKV 281 (773)
Q Consensus 221 G~~~-peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~---------------G-qa~aIAr~L~ams~l~V 281 (773)
.+++ ++.+....++++.++. -.+-+|.|.-.+.++. |.+..+. . ....+...+..+..+++
T Consensus 25 Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 104 (266)
T PRK09245 25 NALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEV 104 (266)
T ss_pred cCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCC
Confidence 4577 4778888888876654 4566676655443333 2221110 0 01123344567788999
Q ss_pred cEEEEEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCC
Q 004120 282 PIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQI 351 (773)
Q Consensus 282 P~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGi 351 (773)
|+|+.|.|.|.|||......||++||.++++|+. +.|..+....+........+.+. ..++|+++++.|+
T Consensus 105 pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Gl 184 (266)
T PRK09245 105 PVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGL 184 (266)
T ss_pred CEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCC
Confidence 9999999999999999888999999999988875 33443333322222111222222 3689999999999
Q ss_pred ceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 004120 352 ADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 395 (773)
Q Consensus 352 VD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~ 395 (773)
||+|+|. + .+..........|...|+..+..
T Consensus 185 v~~vv~~---------~----~l~~~a~~~a~~l~~~~~~a~~~ 215 (266)
T PRK09245 185 VSRVVPA---------D----QLLPAARALAERIAANPPHALRL 215 (266)
T ss_pred cceecCH---------H----HHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999942 2 23344455667788888877533
No 66
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=98.67 E-value=4.1e-07 Score=95.41 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCC-CCCC-CHhHHHh---------ch-HHHHHHHHHHHhCCCCcEEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTP-GAYA-DLKSEEL---------GQ-GEAIAHNLRTMFGLKVPIISIV 287 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTp-GA~~-g~~AEe~---------Gq-a~aIAr~L~ams~l~VP~ISVV 287 (773)
.+++++.+....++++.++. ..+-+|.|.-++ .++. |.+..+. +. .......+..+..+++|+|+.|
T Consensus 25 Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (259)
T TIGR01929 25 NAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMV 104 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 46899999999988876653 445666666555 2332 3322111 00 0112234556778999999999
Q ss_pred cCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeec
Q 004120 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIP 357 (773)
Q Consensus 288 iGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIp 357 (773)
.|.+.|||......||+++|.++++|++ +.|.++....+........+.+. ..++++++++.|+||+|+|
T Consensus 105 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 184 (259)
T TIGR01929 105 NGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVVP 184 (259)
T ss_pred cCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccccC
Confidence 9999999999888899999999998876 34544444333332222222222 3689999999999999994
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 358 EPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 358 E~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
++ .+..........|...|+..+
T Consensus 185 ---------~~----~l~~~a~~~a~~la~~~~~a~ 207 (259)
T TIGR01929 185 ---------LA----DLEKETVRWCREILQKSPMAI 207 (259)
T ss_pred ---------HH----HHHHHHHHHHHHHHhCCHHHH
Confidence 22 244445555667777887775
No 67
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.67 E-value=7.5e-07 Score=93.60 Aligned_cols=163 Identities=12% Similarity=0.073 Sum_probs=106.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCC--CCCCHhHHHh----------chHHHHHHHHHHHhCCCCcEEEE
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPG--AYADLKSEEL----------GQGEAIAHNLRTMFGLKVPIISI 286 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpG--A~~g~~AEe~----------Gqa~aIAr~L~ams~l~VP~ISV 286 (773)
..+++++.++.....++.++. -.+-+|.|.-+++ |-.|.+..+. .....+.+.+..+..+++|+|+.
T Consensus 29 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 108 (262)
T PRK06144 29 RNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAA 108 (262)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 357889999988888877664 3456666655442 3333322211 11123444566778899999999
Q ss_pred EcCCCccchhhhccccceeeeecCCeeeeeC-------HHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceee
Q 004120 287 VIGEGGSGGALAIGCANKLLMLENAVFYVAS-------PEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGV 355 (773)
Q Consensus 287 ViGeg~GGGAlA~g~aD~Vlm~e~A~~sVis-------PEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~I 355 (773)
|.|.++|||.-....||+++|.++++|+.-- |.++....+........+.+. ..++++++++.|+||+|
T Consensus 109 v~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 188 (262)
T PRK06144 109 IAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEV 188 (262)
T ss_pred ECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCee
Confidence 9999999999988899999999999887521 222222222222222223222 36899999999999999
Q ss_pred ecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 004120 356 IPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 395 (773)
Q Consensus 356 IpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~ 395 (773)
+| ++ .+........+.|...|+..+..
T Consensus 189 v~---------~~----~l~~~a~~~a~~i~~~~~~a~~~ 215 (262)
T PRK06144 189 VE---------DA----ALDARADALAELLAAHAPLTLRA 215 (262)
T ss_pred cC---------HH----HHHHHHHHHHHHHHhCCHHHHHH
Confidence 94 22 34444555667778888877543
No 68
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=98.67 E-value=1.3e-07 Score=94.79 Aligned_cols=88 Identities=27% Similarity=0.304 Sum_probs=71.9
Q ss_pred CCCCHHHHHHHHHHHHHhhhcC-CcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhc
Q 004120 221 GMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAI 299 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAekf~-LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~ 299 (773)
|.+++..+.-..|.++.|.+.+ -+||..+||||-.+. ........+...++|+|+.|.|.+.|+|++..
T Consensus 8 g~I~~~~~~~l~~~l~~a~~~~~~~ivl~inspGG~v~----------~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia 77 (178)
T cd07021 8 GEIDPGLAAFVERALKEAKEEGADAVVLDIDTPGGRVD----------SALEIVDLILNSPIPTIAYVNDRAASAGALIA 77 (178)
T ss_pred eEECHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCCHH----------HHHHHHHHHHhCCCCEEEEECCchHHHHHHHH
Confidence 6788888889999999888776 568888999995432 22233344556789999999999999999999
Q ss_pred cccceeeeecCCeeeeeCH
Q 004120 300 GCANKLLMLENAVFYVASP 318 (773)
Q Consensus 300 g~aD~Vlm~e~A~~sVisP 318 (773)
..||+++|.|++.++..+|
T Consensus 78 ~a~d~i~m~p~a~iG~~~~ 96 (178)
T cd07021 78 LAADEIYMAPGATIGAAEP 96 (178)
T ss_pred HhCCeEEECCCCeEecCee
Confidence 9999999999999987666
No 69
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.66 E-value=8.3e-07 Score=93.40 Aligned_cols=161 Identities=14% Similarity=0.165 Sum_probs=105.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh-------chHHHHHHHHHHHhCCCCcEEEEEcCC
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL-------GQGEAIAHNLRTMFGLKVPIISIVIGE 290 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~-------Gqa~aIAr~L~ams~l~VP~ISVViGe 290 (773)
..+++++.+......++.++. -.+-+|.|.-++.++. |.+..+. .....+...+..+..+++|+|+.|.|.
T Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 104 (258)
T PRK06190 25 RNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGA 104 (258)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 356899999999999987754 3456666665543333 2221111 001223445667888999999999999
Q ss_pred CccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecCCC
Q 004120 291 GGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEPL 360 (773)
Q Consensus 291 g~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE~l 360 (773)
++|||......||+++|.++++|+. +.|.+.....+........+.+. ..++|+++++.|+||+|+|.
T Consensus 105 a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-- 182 (258)
T PRK06190 105 AVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPH-- 182 (258)
T ss_pred eecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCH--
Confidence 9999998888999999999998764 33443333333222222222222 36899999999999999942
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 361 GGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 361 GgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
+ .+..........|...|+..+
T Consensus 183 -------~----~l~~~a~~~a~~la~~~~~a~ 204 (258)
T PRK06190 183 -------D----ELLPRARRLAASIAGNNPAAV 204 (258)
T ss_pred -------h----HHHHHHHHHHHHHHcCCHHHH
Confidence 2 233334445566777787775
No 70
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.66 E-value=9.1e-07 Score=92.47 Aligned_cols=161 Identities=11% Similarity=0.050 Sum_probs=102.3
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHhc--h-HHHHHHHHHH--HhCCCCcEEEEEcCCCcc
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG--Q-GEAIAHNLRT--MFGLKVPIISIVIGEGGS 293 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~G--q-a~aIAr~L~a--ms~l~VP~ISVViGeg~G 293 (773)
.+++++.+....+.++.++. -.+-+|.|.-++.++. |.+..+.. . .....+.+.. +..+++|+|+.|.|.+.|
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 104 (254)
T PRK08252 25 NAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALA 104 (254)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEeh
Confidence 56889999999999877653 4567777766554443 22221110 0 0000111111 135789999999999999
Q ss_pred chhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecCCCCCC
Q 004120 294 GGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEPLGGA 363 (773)
Q Consensus 294 GGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE~lGgA 363 (773)
||......||++||.++++|+. +.|..+....+........+.+. ..++++++++.|+||.|+|..
T Consensus 105 gG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~---- 180 (254)
T PRK08252 105 GGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPG---- 180 (254)
T ss_pred HHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCcc----
Confidence 9998888999999999998875 44544444333332222333322 368999999999999999532
Q ss_pred CCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 364 HADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 364 h~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
.+..........|...|+..+.
T Consensus 181 ---------~l~~~a~~~a~~l~~~~~~a~~ 202 (254)
T PRK08252 181 ---------QALDAALELAERIAANGPLAVA 202 (254)
T ss_pred ---------hHHHHHHHHHHHHHhCCHHHHH
Confidence 1233344455667777776643
No 71
>PLN02600 enoyl-CoA hydratase
Probab=98.66 E-value=9e-07 Score=92.45 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=104.8
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCC-CCC-CHhHHHh---------chHHHHHHHHHHHhCCCCcEEEEEc
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPG-AYA-DLKSEEL---------GQGEAIAHNLRTMFGLKVPIISIVI 288 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpG-A~~-g~~AEe~---------Gqa~aIAr~L~ams~l~VP~ISVVi 288 (773)
.+++++.+....++++.++. ..+-+|.|.-.+| ++. |.+..+. .....+...+..+..++.|+|+.|.
T Consensus 17 Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 96 (251)
T PLN02600 17 NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVE 96 (251)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 46899999999998876653 4566676655433 322 3222111 1122233445677889999999999
Q ss_pred CCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCCceeeecC
Q 004120 289 GEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGVIPE 358 (773)
Q Consensus 289 Geg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGiVD~IIpE 358 (773)
|.++|||......||++||.++++|+. +.|.++....+........+.+ ...++++++++.|+||+|+|.
T Consensus 97 G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 176 (251)
T PLN02600 97 GAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPA 176 (251)
T ss_pred CeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeCh
Confidence 999999999988999999999999876 4454444433322222222222 247899999999999999953
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 359 PLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 359 ~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
++ +..........|...|+..+
T Consensus 177 ---------~~----~~~~a~~~a~~la~~~p~a~ 198 (251)
T PLN02600 177 ---------GE----AYEKALELAQEINQKGPLAI 198 (251)
T ss_pred ---------hH----HHHHHHHHHHHHHhCCHHHH
Confidence 22 22233344566777787765
No 72
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.63 E-value=9.1e-07 Score=92.33 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=103.7
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh----------chHHHHHHHHHHHhCCCCcEEEEEc
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL----------GQGEAIAHNLRTMFGLKVPIISIVI 288 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~----------Gqa~aIAr~L~ams~l~VP~ISVVi 288 (773)
.+++++.+.....+++.++. -.+-+|.|.-.+.++. |.+..+. .........+..+..+++|+|+.|.
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 102 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIH 102 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 56899999999999876653 5566676655443332 2221110 0112334456678889999999999
Q ss_pred CCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecC
Q 004120 289 GEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPE 358 (773)
Q Consensus 289 Geg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE 358 (773)
|.+.|||......||+++|.++++|+. +.|..+....+........+.+. ..++++++++.|+||.|+|.
T Consensus 103 G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 182 (257)
T PRK07658 103 GAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPE 182 (257)
T ss_pred CeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCh
Confidence 999999988888899999999988775 33443333323222222223232 37899999999999999942
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 359 PLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 359 ~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
+ .+..........|...++..+
T Consensus 183 ---------~----~l~~~a~~~a~~l~~~~~~a~ 204 (257)
T PRK07658 183 ---------E----TLLDDAKKLAKKIAGKSPATT 204 (257)
T ss_pred ---------h----HHHHHHHHHHHHHHhCCHHHH
Confidence 2 233344444556667776654
No 73
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.62 E-value=1.5e-06 Score=91.03 Aligned_cols=161 Identities=17% Similarity=0.097 Sum_probs=103.2
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCC-C-CCCHhHHHh------chHHHHHHHHHHHhCCCCcEEEEEcCCC
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPG-A-YADLKSEEL------GQGEAIAHNLRTMFGLKVPIISIVIGEG 291 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpG-A-~~g~~AEe~------Gqa~aIAr~L~ams~l~VP~ISVViGeg 291 (773)
.+++++.+....++++.+++ -.+-+|.|.-+++ + -.|.+..+. +........+..+..+++|+|+.|.|.+
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a 105 (259)
T PRK06494 26 NALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVA 105 (259)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEE
Confidence 46899999999998876653 4566776666553 3 333322211 0111111223445578999999999999
Q ss_pred ccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecCCCC
Q 004120 292 GSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEPLG 361 (773)
Q Consensus 292 ~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE~lG 361 (773)
.|||......||+++|.++++|+. +.|.++....+........+.+. ..++|+++++.|+||+|+|..
T Consensus 106 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~-- 183 (259)
T PRK06494 106 MGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAG-- 183 (259)
T ss_pred ecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCHh--
Confidence 999999888999999999998876 34444443333322222223222 368999999999999999532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 362 GAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 362 gAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
.+..........|...|+..+.
T Consensus 184 -----------~l~~~a~~~a~~la~~~~~a~~ 205 (259)
T PRK06494 184 -----------ELLAAAERWADDILACSPLSIR 205 (259)
T ss_pred -----------HHHHHHHHHHHHHHhcCHHHHH
Confidence 2333344445567777777653
No 74
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.62 E-value=8.2e-07 Score=93.16 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh-------chHHHHHHHHHHHhCCCCcEEEEEcCCC
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL-------GQGEAIAHNLRTMFGLKVPIISIVIGEG 291 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~-------Gqa~aIAr~L~ams~l~VP~ISVViGeg 291 (773)
.+++++.+.....+++.++. -.+-+|.|.-.++++. |.+.... .....+...+..+..+++|+|+.|.|.+
T Consensus 30 Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 109 (261)
T PRK08138 30 NALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYA 109 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEE
Confidence 46899999999998887653 4566676665444433 3222111 1122334456677889999999999999
Q ss_pred ccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCCceeeecC
Q 004120 292 GSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGVIPE 358 (773)
Q Consensus 292 ~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGiVD~IIpE 358 (773)
.|||......||++|+.++++|+. +.|..+....+........+.+ ...++++++++.|+||.|+|+
T Consensus 110 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (261)
T PRK08138 110 LGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVED 186 (261)
T ss_pred EcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCc
Confidence 999998888999999999988775 3344333332222222222322 236899999999999999953
No 75
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.62 E-value=1.5e-06 Score=91.91 Aligned_cols=161 Identities=12% Similarity=0.099 Sum_probs=104.5
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh----------------chHHHHHHHHHHHhCCCCc
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL----------------GQGEAIAHNLRTMFGLKVP 282 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~----------------Gqa~aIAr~L~ams~l~VP 282 (773)
.+++++.++...+++..++. -.+-+|.|.-.+.++. |.+..+. .....+.+.+..+..+++|
T Consensus 32 Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 111 (276)
T PRK05864 32 NSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQP 111 (276)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCC
Confidence 46899999999988876654 4566666655443333 2211110 0112233455677789999
Q ss_pred EEEEEcCCCccchhhhccccceeeeecCCeeee-------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCC
Q 004120 283 IISIVIGEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQI 351 (773)
Q Consensus 283 ~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV-------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGi 351 (773)
+|+.|.|.+.|||+.....||++||.++++|+. .+|..+...+.........+.+. ..++++++++.|+
T Consensus 112 vIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Gl 191 (276)
T PRK05864 112 VIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGL 191 (276)
T ss_pred EEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCC
Confidence 999999999999999999999999999988764 32343333322222222222222 3689999999999
Q ss_pred ceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 352 ADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 352 VD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
||+|+| +++ +..........|...|+..+.
T Consensus 192 v~~vv~---------~~~----l~~~a~~~a~~la~~~p~a~~ 221 (276)
T PRK05864 192 VSRQVP---------DEQ----LLDTCYAIAARMAGFSRPGIE 221 (276)
T ss_pred cceeeC---------HHH----HHHHHHHHHHHHHhCCHHHHH
Confidence 999993 332 333444555667777877654
No 76
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.61 E-value=1.3e-06 Score=93.53 Aligned_cols=138 Identities=18% Similarity=0.107 Sum_probs=92.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHhc----------------------hH----HHHHH
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG----------------------QG----EAIAH 271 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~G----------------------qa----~aIAr 271 (773)
..+++++.+.-..++++.++. -.+-+|.|.-.+.++. |.+..+.+ +. .....
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (296)
T PRK08260 25 LNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGR 104 (296)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHH
Confidence 356899999999999887653 4566666655443332 22111100 01 11123
Q ss_pred HHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcc
Q 004120 272 NLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKI 341 (773)
Q Consensus 272 ~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lki 341 (773)
.+..+..+++|+|+.|.|.|+|||.-....||++||.++++|+. +.|..+.............+.+. ..+
T Consensus 105 ~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~ 184 (296)
T PRK08260 105 VTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVF 184 (296)
T ss_pred HHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCcc
Confidence 45667788999999999999999999999999999999998875 33444444333322222223232 368
Q ss_pred cHHHHHHcCCceeeec
Q 004120 342 TGSELCKLQIADGVIP 357 (773)
Q Consensus 342 tA~dL~~lGiVD~IIp 357 (773)
+++++++.|+||+|+|
T Consensus 185 ~a~eA~~~GLv~~vv~ 200 (296)
T PRK08260 185 DAQEALDGGLVRSVHP 200 (296)
T ss_pred CHHHHHHCCCceeecC
Confidence 9999999999999994
No 77
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.61 E-value=2.6e-07 Score=92.53 Aligned_cols=127 Identities=24% Similarity=0.259 Sum_probs=92.7
Q ss_pred CCCCHHHHHHHHHHHHHhhhcC-CcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEc---CCCccchh
Q 004120 221 GMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVI---GEGGSGGA 296 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAekf~-LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVVi---Geg~GGGA 296 (773)
|.+++..+.-..|.++.|...+ -+|+..|||||-.+... ..|. ..+...++|++++|. |.+.|+|+
T Consensus 8 G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPGG~v~~~-------~~I~---~~i~~~~~pvv~~v~p~g~~AaSag~ 77 (172)
T cd07015 8 GQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRADAA-------GNIV---QRIQQSKIPVIIYVYPPGASAASAGT 77 (172)
T ss_pred eEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCCCCHHHH-------HHHH---HHHHhcCcCEEEEEecCCCeehhHHH
Confidence 6788888888899999887654 57999999999654321 2333 334457899999999 99999999
Q ss_pred hhccccceeeeecCCeeeeeCHHHHH-----------HHh------hhh----ccCchHHHH-----HhcccHHHHHHcC
Q 004120 297 LAIGCANKLLMLENAVFYVASPEACA-----------AIL------WKS----AKASPKAAE-----KLKITGSELCKLQ 350 (773)
Q Consensus 297 lA~g~aD~Vlm~e~A~~sVisPEgaA-----------sIl------~rd----~~~a~eaAe-----~lkitA~dL~~lG 350 (773)
+.+..||.++|.|++.++.++|-+.. .++ .|. .-+-.+.++ .+-+|+++.++.|
T Consensus 78 ~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G 157 (172)
T cd07015 78 YIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYG 157 (172)
T ss_pred HHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHHHcC
Confidence 99999999999999999998884310 000 000 001122222 2568999999999
Q ss_pred Cceeeec
Q 004120 351 IADGVIP 357 (773)
Q Consensus 351 iVD~IIp 357 (773)
+||.|+.
T Consensus 158 ~iD~ia~ 164 (172)
T cd07015 158 VIEVVAR 164 (172)
T ss_pred CceeeeC
Confidence 9999993
No 78
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.61 E-value=9e-07 Score=87.39 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=97.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHH-----------hchHHHHHHHHHHHhCCCCcEEEE
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEE-----------LGQGEAIAHNLRTMFGLKVPIISI 286 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe-----------~Gqa~aIAr~L~ams~l~VP~ISV 286 (773)
..+++++.++...+.++.++. ..+-+|.|.-+++++. |.+... ......+.+.+..+...++|+|++
T Consensus 20 ~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~ 99 (195)
T cd06558 20 RNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAA 99 (195)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 366889999999999987765 4556666666555433 332221 123345566667778899999999
Q ss_pred EcCCCccchhhhccccceeeeecCCeeee-------eCHHHHHHHhhhhc--cCchHHH-HHhcccHHHHHHcCCceeee
Q 004120 287 VIGEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKSA--KASPKAA-EKLKITGSELCKLQIADGVI 356 (773)
Q Consensus 287 ViGeg~GGGAlA~g~aD~Vlm~e~A~~sV-------isPEgaAsIl~rd~--~~a~eaA-e~lkitA~dL~~lGiVD~II 356 (773)
|.|.+.|||+.....||+++|.++++|+. .+|.++...+.+.. ..+.+++ ....++++++++.|+||.|+
T Consensus 100 v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~ 179 (195)
T cd06558 100 VNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVV 179 (195)
T ss_pred ECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeec
Confidence 99999999999888899999999988874 33445555544432 1122222 23468999999999999999
Q ss_pred c
Q 004120 357 P 357 (773)
Q Consensus 357 p 357 (773)
+
T Consensus 180 ~ 180 (195)
T cd06558 180 P 180 (195)
T ss_pred C
Confidence 4
No 79
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.61 E-value=8.8e-07 Score=92.77 Aligned_cols=163 Identities=16% Similarity=0.128 Sum_probs=102.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHhc------hHH-HHHHHHHHHhCCCCcEEEEEcCC
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG------QGE-AIAHNLRTMFGLKVPIISIVIGE 290 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~G------qa~-aIAr~L~ams~l~VP~ISVViGe 290 (773)
..+++++.+......++.++. ..+-+|.|.-.+.++. |.+..+.. ... ........+..+++|+|+.|.|.
T Consensus 24 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~ 103 (254)
T PRK08259 24 RNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGY 103 (254)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCE
Confidence 356899999999999987754 3344555554433332 22211110 000 01111222336899999999999
Q ss_pred CccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecCCC
Q 004120 291 GGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEPL 360 (773)
Q Consensus 291 g~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE~l 360 (773)
+.|||.-....||++||.++++|+. +.|..+....+........+.+. ..++|+++++.|+||+|+|..
T Consensus 104 a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~- 182 (254)
T PRK08259 104 AVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKG- 182 (254)
T ss_pred EEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeChh-
Confidence 9999999888999999999998875 34444433322222222222222 368999999999999999532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 004120 361 GGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 395 (773)
Q Consensus 361 GgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~ 395 (773)
.+..........|...|+..+..
T Consensus 183 ------------~l~~~a~~~a~~la~~~~~a~~~ 205 (254)
T PRK08259 183 ------------QARAAAEELAAELAAFPQTCLRA 205 (254)
T ss_pred ------------HHHHHHHHHHHHHHhCCHHHHHH
Confidence 34444555566788888877543
No 80
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=98.60 E-value=2.1e-06 Score=91.27 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCC--CCCC-CHhHHHhc-------hHHHH----HHHHHHHhCCCCcEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTP--GAYA-DLKSEELG-------QGEAI----AHNLRTMFGLKVPIIS 285 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTp--GA~~-g~~AEe~G-------qa~aI----Ar~L~ams~l~VP~IS 285 (773)
.+++.+.+....++++.++. -.+-+|.|.-.+ +++. |.+..+.. ....+ ...+..+..+++|+|+
T Consensus 33 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 112 (278)
T PLN03214 33 NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVC 112 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 56899999999999976654 445566665543 2333 33222110 00111 2345678889999999
Q ss_pred EEcCCCccchhhhccccceeeeecCCeeee------e-CHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCcee
Q 004120 286 IVIGEGGSGGALAIGCANKLLMLENAVFYV------A-SPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADG 354 (773)
Q Consensus 286 VViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------i-sPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~ 354 (773)
.|.|.++|||......||++|+.++++|+. + .|.+.....+........+.+. ..++++++++.|+||+
T Consensus 113 aV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~ 192 (278)
T PLN03214 113 AIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDE 192 (278)
T ss_pred EEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcE
Confidence 999999999999888999999999998875 3 2444443333332222333332 3689999999999999
Q ss_pred eecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 355 VIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 355 IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
|+|+. .+..........|...++..+.
T Consensus 193 vv~~~-------------~l~~~a~~~a~~l~~~~~~a~~ 219 (278)
T PLN03214 193 VVPAA-------------ALMEAAASAMERALKLPSAARA 219 (278)
T ss_pred ecChH-------------HHHHHHHHHHHHHHcCCHHHHH
Confidence 99532 2333444455677788887653
No 81
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.60 E-value=1.6e-06 Score=90.59 Aligned_cols=161 Identities=17% Similarity=0.180 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh-----chHH-HHHHHHHHHhCCCCcEEEEEcCCCc
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL-----GQGE-AIAHNLRTMFGLKVPIISIVIGEGG 292 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~-----Gqa~-aIAr~L~ams~l~VP~ISVViGeg~ 292 (773)
.+++++...-....++.++. ..+.+|.|...+.++. |....+. +... .-...+..+..++.|+|+.|.|.+.
T Consensus 27 Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 106 (249)
T PRK07110 27 NAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAI 106 (249)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCcee
Confidence 56889999988888876654 4566777776554443 3222111 1100 0124556778899999999999999
Q ss_pred cchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecCCCCC
Q 004120 293 SGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEPLGG 362 (773)
Q Consensus 293 GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE~lGg 362 (773)
|||......||+++|.++++|+. +.|..+...++........+.+. ..++++++++.|+||+|++
T Consensus 107 GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~----- 181 (249)
T PRK07110 107 GGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLP----- 181 (249)
T ss_pred chHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeC-----
Confidence 99999999999999999988765 23444433333332222223222 4789999999999999994
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 363 AHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 363 Ah~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
+++ +..........|...|+..+.
T Consensus 182 ----~~~----l~~~a~~~a~~la~~~~~a~~ 205 (249)
T PRK07110 182 ----RAE----VLEKALELARSLAEKPRHSLV 205 (249)
T ss_pred ----hHH----HHHHHHHHHHHHHhCCHHHHH
Confidence 222 333344445667777776653
No 82
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.60 E-value=1.1e-06 Score=93.11 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=102.7
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCC-CCC-CHhHHHh------c--hHH--HHHHHHHHHhCCCCcEEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPG-AYA-DLKSEEL------G--QGE--AIAHNLRTMFGLKVPIISIV 287 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpG-A~~-g~~AEe~------G--qa~--aIAr~L~ams~l~VP~ISVV 287 (773)
.+++++.++....+++.++. -.+-+|.|.-.++ ++. |.+..+. + ... .....+..+..+++|+|+.|
T Consensus 35 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (273)
T PRK07396 35 NAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMV 114 (273)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEE
Confidence 46899999999999987654 3455666655442 222 3222111 0 011 12234556778999999999
Q ss_pred cCCCccchhhhccccceeeeecCCeeeee------CHH-HHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeee
Q 004120 288 IGEGGSGGALAIGCANKLLMLENAVFYVA------SPE-ACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVI 356 (773)
Q Consensus 288 iGeg~GGGAlA~g~aD~Vlm~e~A~~sVi------sPE-gaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~II 356 (773)
.|.++|||.-....||++||.++++|+.- .|. +....+.+- .....+.+. ..++|+++++.|+||+|+
T Consensus 115 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~-vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv 193 (273)
T PRK07396 115 AGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARI-VGQKKAREIWFLCRQYDAQEALDMGLVNTVV 193 (273)
T ss_pred CCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHH-hhHHHHHHHHHhCCCcCHHHHHHcCCcCeec
Confidence 99999999998889999999999988852 233 233333221 111222222 368999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 357 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 357 pE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
|. + .+........+.|...|+..+.
T Consensus 194 ~~---------~----~l~~~a~~~a~~la~~~~~a~~ 218 (273)
T PRK07396 194 PL---------A----DLEKETVRWCREMLQNSPMALR 218 (273)
T ss_pred CH---------H----HHHHHHHHHHHHHHhCCHHHHH
Confidence 42 2 3444455555667777777653
No 83
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.60 E-value=1.3e-06 Score=92.19 Aligned_cols=162 Identities=12% Similarity=0.123 Sum_probs=104.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh----------chHHHHHHHHHHHhCCCCcEEEEE
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL----------GQGEAIAHNLRTMFGLKVPIISIV 287 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~----------Gqa~aIAr~L~ams~l~VP~ISVV 287 (773)
..+++++.+....++++.++. -.+-+|.|.-.+.++. |.+..+. .....+.+.+..+..+++|+|+.|
T Consensus 32 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (266)
T PRK08139 32 FNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARV 111 (266)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 356899999999998887654 3455666655443333 2221111 111223445667888999999999
Q ss_pred cCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeec
Q 004120 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIP 357 (773)
Q Consensus 288 iGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIp 357 (773)
.|.|.|||+-....||++|+.++++|+. +.|.+....+.+ ......+.+. ..++|+++++.|+||+|+|
T Consensus 112 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~l~r-~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~ 190 (266)
T PRK08139 112 HGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPMVALSR-NVPRKQAMEMLLTGEFIDAATAREWGLVNRVVP 190 (266)
T ss_pred CceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccHHHHHH-HhCHHHHHHHHHcCCccCHHHHHHcCCccEeeC
Confidence 9999999999888999999999998875 223322211211 1111222222 3689999999999999995
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 004120 358 EPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 395 (773)
Q Consensus 358 E~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~ 395 (773)
.. .+..........|...|+..+..
T Consensus 191 ~~-------------~l~~~a~~~a~~la~~~~~a~~~ 215 (266)
T PRK08139 191 AD-------------ALDAAVARLAAVIAAKSPAAVRI 215 (266)
T ss_pred hh-------------HHHHHHHHHHHHHHhCCHHHHHH
Confidence 32 24444555556777777776533
No 84
>PRK08321 naphthoate synthase; Validated
Probab=98.59 E-value=1.6e-06 Score=93.16 Aligned_cols=161 Identities=15% Similarity=0.103 Sum_probs=103.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCC-------CCC-CCHhHHHh----------------chHH----HHH
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTP-------GAY-ADLKSEEL----------------GQGE----AIA 270 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTp-------GA~-~g~~AEe~----------------Gqa~----aIA 270 (773)
..+++++.+.-..++++.++. -.+-+|.|.-.+ .++ .|.+.... .... .+.
T Consensus 46 ~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (302)
T PRK08321 46 RNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHIL 125 (302)
T ss_pred ccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHH
Confidence 356899999999999987654 455666665433 122 22221110 0000 111
Q ss_pred HHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeee-cCCeeee------eCHHHHHHHhhhhccCchHHHHH----h
Q 004120 271 HNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLML-ENAVFYV------ASPEACAAILWKSAKASPKAAEK----L 339 (773)
Q Consensus 271 r~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~-e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----l 339 (773)
.....+..+++|+|+.|.|.+.|||+.....||++||. ++++|++ +.|.++.+..+........+.+. .
T Consensus 126 ~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~ 205 (302)
T PRK08321 126 EVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGR 205 (302)
T ss_pred HHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCC
Confidence 23345678899999999999999999998899999999 6898875 22443333333332222233322 3
Q ss_pred cccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 340 KITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 340 kitA~dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
.++|+++++.|+||.|+|. + .+..........|...++..+
T Consensus 206 ~~~A~eA~~~GLv~~vv~~---------~----~l~~~a~~~a~~la~~~~~a~ 246 (302)
T PRK08321 206 TYSAEEAHDMGAVNAVVPH---------A----ELETEALEWAREINGKSPTAM 246 (302)
T ss_pred ccCHHHHHHCCCceEeeCH---------H----HHHHHHHHHHHHHHhCCHHHH
Confidence 6899999999999999942 2 244445555667777887775
No 85
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.58 E-value=7.7e-07 Score=92.77 Aligned_cols=160 Identities=14% Similarity=0.058 Sum_probs=105.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh---------chHHHHHHHHHHHhCCCCcEEEEEc
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL---------GQGEAIAHNLRTMFGLKVPIISIVI 288 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~---------Gqa~aIAr~L~ams~l~VP~ISVVi 288 (773)
..+++++.+....++++.++. ..+-+|.|.-++.++. |.+-.+. .........+..+..+++|+|+.|.
T Consensus 24 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 103 (249)
T PRK05870 24 RNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVN 103 (249)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 356889999999999987653 4566777766554443 2221111 1122334455677889999999999
Q ss_pred CCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecC
Q 004120 289 GEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPE 358 (773)
Q Consensus 289 Geg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE 358 (773)
|.++|||+.....||+++|.++++|++ +.|.++....+........+.+. ..++++++++.|+||+|+ +
T Consensus 104 G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~ 182 (249)
T PRK05870 104 GAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA-D 182 (249)
T ss_pred CEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH-h
Confidence 999999999989999999999998864 23333333322222222222222 368999999999999998 2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 359 PLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 359 ~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
.+..........|...|+..+.
T Consensus 183 --------------~l~~~a~~~a~~la~~~~~a~~ 204 (249)
T PRK05870 183 --------------DPVAAALELAAGPAAAPRELVL 204 (249)
T ss_pred --------------hHHHHHHHHHHHHHhCCHHHHH
Confidence 1333444555667777777653
No 86
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.58 E-value=2.1e-06 Score=89.88 Aligned_cols=136 Identities=15% Similarity=0.113 Sum_probs=92.6
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHH------hchHHHHHHHHHHHhCCCCcEEEEEcCCCc
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEE------LGQGEAIAHNLRTMFGLKVPIISIVIGEGG 292 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe------~Gqa~aIAr~L~ams~l~VP~ISVViGeg~ 292 (773)
.+++++.+....+.+..++. -.+-+|.|.-.++++. |.+..+ ........+.+..+..+++|+|+.|.|.++
T Consensus 22 Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 101 (251)
T TIGR03189 22 NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCL 101 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeee
Confidence 46899999999998877654 4556676665544433 322111 111223345566788899999999999999
Q ss_pred cchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeec
Q 004120 293 SGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIP 357 (773)
Q Consensus 293 GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIp 357 (773)
|||.-....||+++|.++++|++ +.|.+... ++........+.+. ..++|+++++.|+||+|++
T Consensus 102 GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~~~~-~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~ 175 (251)
T TIGR03189 102 GGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASC-LLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAE 175 (251)
T ss_pred eHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHH-HHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Confidence 99999888999999999998776 33434333 23322222233222 3689999999999999994
No 87
>PLN02888 enoyl-CoA hydratase
Probab=98.58 E-value=1.4e-06 Score=91.85 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh-----chH-HHHHHHHHHHhCCCCcEEEEEcCCCc
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL-----GQG-EAIAHNLRTMFGLKVPIISIVIGEGG 292 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~-----Gqa-~aIAr~L~ams~l~VP~ISVViGeg~ 292 (773)
.+++++.++....+++.++. ..+-+|.|.-++.++. |.+..+. +.. ......+..+..+++|+|+.|.|.++
T Consensus 32 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~ 111 (265)
T PLN02888 32 NALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAI 111 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 56889999999999976654 4556666655443333 3222111 111 11123455677899999999999999
Q ss_pred cchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCCceeeecCCCCC
Q 004120 293 SGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGVIPEPLGG 362 (773)
Q Consensus 293 GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGiVD~IIpE~lGg 362 (773)
|||......||++||.+++.|+. +.|..+....+........+.+ ...++|+++++.|+||+|++.
T Consensus 112 GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~---- 187 (265)
T PLN02888 112 TAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEE---- 187 (265)
T ss_pred chHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEeeCh----
Confidence 99999888999999999988765 2343333322222222222222 237899999999999999943
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 363 AHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 363 Ah~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
++ +..........|...++..+
T Consensus 188 -----~~----l~~~a~~~a~~la~~~~~a~ 209 (265)
T PLN02888 188 -----SE----LLKKAREVAEAIIKNNQGMV 209 (265)
T ss_pred -----HH----HHHHHHHHHHHHHhCCHHHH
Confidence 22 22233344455666676653
No 88
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=98.57 E-value=1.7e-06 Score=90.85 Aligned_cols=159 Identities=16% Similarity=0.141 Sum_probs=102.7
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh-----c-h-H------HHHHHHHHHHhCCCCcEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL-----G-Q-G------EAIAHNLRTMFGLKVPIIS 285 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~-----G-q-a------~aIAr~L~ams~l~VP~IS 285 (773)
.++++..++...++++.++. ..+-+|.|.-++.++. |.+..+. + . . ..+ ..+..+..+++|+|+
T Consensus 27 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kpvIa 105 (263)
T PRK07799 27 NALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRI-DALLKGRRLTKPLIA 105 (263)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHH-HHHHHHhcCCCCEEE
Confidence 56899999999999987764 4456666665544443 3222111 0 0 0 011 123345678999999
Q ss_pred EEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceee
Q 004120 286 IVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGV 355 (773)
Q Consensus 286 VViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~I 355 (773)
.|.|.++|||.-....||++||.++++|+. +.|..+....+........+.+. ..++|+++++.|+||+|
T Consensus 106 av~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v 185 (263)
T PRK07799 106 AVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHV 185 (263)
T ss_pred EECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEe
Confidence 999999999999888999999999998776 44554444333322222223322 36899999999999999
Q ss_pred ecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 356 IPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 356 IpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
+|.. + +..........+...|+..+
T Consensus 186 v~~~---------~----l~~~a~~~a~~~~~~~~~a~ 210 (263)
T PRK07799 186 VPDG---------Q----ALDKALELAELINANGPLAV 210 (263)
T ss_pred cCcc---------h----HHHHHHHHHHHHHhcChHHH
Confidence 9532 1 22233344566777777665
No 89
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.57 E-value=1.5e-06 Score=91.51 Aligned_cols=161 Identities=13% Similarity=0.147 Sum_probs=101.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHhc---------------hH----HHHHHHHHHHhC
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG---------------QG----EAIAHNLRTMFG 278 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~G---------------qa----~aIAr~L~ams~ 278 (773)
..+++++.+....+.++.++. ..+-+|.|.-.++++. |.+..+.. .. ..+-+.+..+..
T Consensus 27 ~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 106 (272)
T PRK06210 27 LNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTA 106 (272)
T ss_pred ccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHh
Confidence 356899999999999876653 3455566655444433 32222110 00 011223456778
Q ss_pred CCCcEEEEEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHH
Q 004120 279 LKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCK 348 (773)
Q Consensus 279 l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~ 348 (773)
+++|+|++|.|.++|||......||+++|.++++|+. +.|.++....+........+.+ ...++|+++++
T Consensus 107 ~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~ 186 (272)
T PRK06210 107 LRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALR 186 (272)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHH
Confidence 9999999999999999999999999999999998874 2344333332222212222222 23689999999
Q ss_pred cCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcC-CCHHHH
Q 004120 349 LQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGK-MDTQEL 393 (773)
Q Consensus 349 lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~-l~~~~l 393 (773)
.|+||.|+| +++ +..........+.. .++..+
T Consensus 187 ~Glv~~vv~---------~~~----l~~~a~~~a~~i~~~~~p~a~ 219 (272)
T PRK06210 187 LGLVNRVVP---------PDE----LMERTLAYAEDLARNVSPASM 219 (272)
T ss_pred cCCcceecC---------HHH----HHHHHHHHHHHHHhcCCHHHH
Confidence 999999994 222 23334444456665 366664
No 90
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.57 E-value=1.7e-06 Score=92.76 Aligned_cols=161 Identities=12% Similarity=0.166 Sum_probs=106.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHhc---------------------------------
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG--------------------------------- 264 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~G--------------------------------- 264 (773)
..+++++.+.....+++.++. ..+-+|.|.-.+.++. |.+..+..
T Consensus 31 ~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (302)
T PRK08272 31 GNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDY 110 (302)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccccccccchhhH
Confidence 367899999999999987764 4566777766554433 22221110
Q ss_pred -hHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeee-------eCHHHHHHHhhhhccCchHHH
Q 004120 265 -QGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKSAKASPKAA 336 (773)
Q Consensus 265 -qa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV-------isPEgaAsIl~rd~~~a~eaA 336 (773)
......+.+..+..+++|+|+.|.|.|+|||......||++||.++++|+. ++|. . .|........+.
T Consensus 111 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~--~--~~~~~vG~~~A~ 186 (302)
T PRK08272 111 QMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPAT--G--MWAYRLGPQRAK 186 (302)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChH--H--HHHHHhhHHHHH
Confidence 011223445677789999999999999999999888999999999998764 2222 1 121111112222
Q ss_pred HH----hcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004120 337 EK----LKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHR 397 (773)
Q Consensus 337 e~----lkitA~dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~R 397 (773)
+. ..++++++++.|+||.|+| ++ .+..........|...|+..+...+
T Consensus 187 ~llltG~~i~a~eA~~~GLv~~vv~---------~~----~l~~~a~~la~~ia~~~~~a~~~~K 238 (302)
T PRK08272 187 RLLFTGDCITGAQAAEWGLAVEAVP---------PE----ELDERTERLVERIAAVPVNQLAMVK 238 (302)
T ss_pred HHHHcCCccCHHHHHHcCCCceecC---------HH----HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22 3689999999999999994 22 3444555556778888888765444
No 91
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=98.55 E-value=1.6e-07 Score=91.31 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhcccccee
Q 004120 226 HGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKL 305 (773)
Q Consensus 226 eg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~V 305 (773)
..+....+.++.+... -||+.+|||||-.+.. +..|... +...++|++++|.|.|.|+|++.+..||++
T Consensus 15 ~~~~~~~~~l~~~~~~-~~i~l~inspGG~~~~-------~~~i~~~---i~~~~~pvi~~v~g~a~s~g~~ia~a~d~~ 83 (160)
T cd07016 15 VTAKEFKDALDALGDD-SDITVRINSPGGDVFA-------GLAIYNA---LKRHKGKVTVKIDGLAASAASVIAMAGDEV 83 (160)
T ss_pred cCHHHHHHHHHhccCC-CCEEEEEECCCCCHHH-------HHHHHHH---HHhcCCCEEEEEcchHHhHHHHHHhcCCeE
Confidence 3455666666665544 7999999999965321 1234443 444689999999999999999999999999
Q ss_pred eeecCCeeeeeCHHHHH----------------------HHhhhhccCchHHH-H----HhcccHHHHHHcCCceee
Q 004120 306 LMLENAVFYVASPEACA----------------------AILWKSAKASPKAA-E----KLKITGSELCKLQIADGV 355 (773)
Q Consensus 306 lm~e~A~~sVisPEgaA----------------------sIl~rd~~~a~eaA-e----~lkitA~dL~~lGiVD~I 355 (773)
+|.|++++++-.|.+.. .++.+.....++.. + ..-+++++.++.|+||+|
T Consensus 84 ~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 84 EMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred EECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 99999999875554321 01111111111211 1 124789999999999986
No 92
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.55 E-value=3.3e-06 Score=88.43 Aligned_cols=163 Identities=10% Similarity=0.114 Sum_probs=105.4
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh-----------chHHHHHHHHHHHhCCCCcEEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL-----------GQGEAIAHNLRTMFGLKVPIISIV 287 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~-----------Gqa~aIAr~L~ams~l~VP~ISVV 287 (773)
.+++++.+....++++.++. -.+-+|.|.-.++++. |.+..+. .......+.+..+..+++|+|+.|
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (257)
T PRK06495 25 NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAV 104 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 56899999999999987654 4555666665544443 3222211 011223345667888999999999
Q ss_pred cCCCccchhhhccccceeeeecCCeeee----eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCCceeeecCC
Q 004120 288 IGEGGSGGALAIGCANKLLMLENAVFYV----ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGVIPEP 359 (773)
Q Consensus 288 iGeg~GGGAlA~g~aD~Vlm~e~A~~sV----isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGiVD~IIpE~ 359 (773)
.|.++|||......||++||.++++|+. +|--+....+.+ ......+.+ ...++|+++++.|+||+|+|.
T Consensus 105 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~~l~~-~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~- 182 (257)
T PRK06495 105 NGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGGGKHAMR-LFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPP- 182 (257)
T ss_pred CCeeehhHHHHHHhCCEEEecCCCEeeChhhccCccccHHHHHH-HhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCH-
Confidence 9999999999888999999999988775 111111111211 111111222 236899999999999999942
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004120 360 LGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHR 397 (773)
Q Consensus 360 lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~R 397 (773)
+ .+..........|...|+..+...+
T Consensus 183 --------~----~~~~~a~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK06495 183 --------E----ELMPEAMEIAREIASKSPLATRLAK 208 (257)
T ss_pred --------H----HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 2 2344555566778888887764443
No 93
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.54 E-value=3.7e-06 Score=88.10 Aligned_cols=156 Identities=13% Similarity=0.165 Sum_probs=101.9
Q ss_pred CCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC-CHhHHHh------c-----hHHHHHHHHHHHhCCCCcEEEEEc
Q 004120 221 GMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYA-DLKSEEL------G-----QGEAIAHNLRTMFGLKVPIISIVI 288 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~-g~~AEe~------G-----qa~aIAr~L~ams~l~VP~ISVVi 288 (773)
.+++++.++....+++.++. .+-+|.+.-.++++. |.+..+. + ......+.+..+..+++|+|+.|.
T Consensus 26 Nal~~~~~~~L~~~l~~~~~-~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 104 (255)
T PRK07112 26 NTINDRLIAECMDVLDRCEH-AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVR 104 (255)
T ss_pred CCCCHHHHHHHHHHHHHhhc-CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEe
Confidence 56899999999999887763 566666655443333 2221110 1 012234556678889999999999
Q ss_pred CCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeecC
Q 004120 289 GEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPE 358 (773)
Q Consensus 289 Geg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIpE 358 (773)
|.+.|||......||+++|.++++|++ +.|.+....+.+ ......+.+. ..++|+++++.|+||+|+|.
T Consensus 105 G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~-~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 183 (255)
T PRK07112 105 GKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVLPFLIR-RIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGAN 183 (255)
T ss_pred cEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchhhHHHHH-HhCHHHHHHHHHhCCcccHHHHHHcCCCceecCc
Confidence 999999999999999999999998876 344433322222 1222222222 36899999999999999952
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 359 PLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 359 ~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
. +. .+...+..|...++..+
T Consensus 184 ~--------~~-------~~~~~a~~l~~~~p~a~ 203 (255)
T PRK07112 184 S--------DT-------LLRKHLLRLRCLNKAAV 203 (255)
T ss_pred H--------HH-------HHHHHHHHHHhCCHHHH
Confidence 1 11 13334566777777664
No 94
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.51 E-value=2.7e-06 Score=89.04 Aligned_cols=162 Identities=13% Similarity=0.099 Sum_probs=104.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh---------chH-------HHHHHHHHHHhCCCC
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL---------GQG-------EAIAHNLRTMFGLKV 281 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~---------Gqa-------~aIAr~L~ams~l~V 281 (773)
..++++..+.....+++.++. -.+-+|.|.-+++++. |.+.... ... ....+.+..+..+++
T Consensus 24 ~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 103 (262)
T PRK07509 24 MNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPV 103 (262)
T ss_pred ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCC
Confidence 357899999999999987764 3456677766655443 2221111 000 011223345667899
Q ss_pred cEEEEEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCC
Q 004120 282 PIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQI 351 (773)
Q Consensus 282 P~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGi 351 (773)
|+|+.|.|.+.|||.-....||+++|.++++|+. +.|..+....+........+.+ ...++|+++++.|+
T Consensus 104 pvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Gl 183 (262)
T PRK07509 104 PVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGL 183 (262)
T ss_pred CEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCC
Confidence 9999999999999999888999999999998876 3355444443333222222222 23689999999999
Q ss_pred ceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004120 352 ADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKH 396 (773)
Q Consensus 352 VD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~ 396 (773)
||+|+++ +..........|...|+..+...
T Consensus 184 v~~vv~~---------------~~~~a~~~a~~l~~~~~~~~~~~ 213 (262)
T PRK07509 184 VTHVSDD---------------PLAAALALAREIAQRSPDAIAAA 213 (262)
T ss_pred hhhhhch---------------HHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999832 12233444556667777665433
No 95
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.51 E-value=2.5e-06 Score=89.38 Aligned_cols=159 Identities=16% Similarity=0.218 Sum_probs=106.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh------------chHHHHHHHHHHHhCCCCcEEE
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------------GQGEAIAHNLRTMFGLKVPIIS 285 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~------------Gqa~aIAr~L~ams~l~VP~IS 285 (773)
..+++++.+....++++.++. -.+-+|.|.-+++++. |.+..+. .....+.+.+..+..+++|+|+
T Consensus 27 ~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 106 (260)
T PRK07827 27 RNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIA 106 (260)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 357899999999999987654 4556666666554443 2221110 1122345566778889999999
Q ss_pred EEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCCceee
Q 004120 286 IVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGV 355 (773)
Q Consensus 286 VViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGiVD~I 355 (773)
.|.|.+.|||+-....||++||.++++|++ +.|..++..++...- -..+.+ ...++|+++++.|+||+|
T Consensus 107 av~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v 185 (260)
T PRK07827 107 AIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTAA 185 (260)
T ss_pred EEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCcccc
Confidence 999999999999888999999999998876 334444443333221 112222 236899999999999998
Q ss_pred ecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 356 IPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 356 IpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
++ + +.........+|...|+..+.
T Consensus 186 ~~--------~-------l~~~a~~~a~~la~~~~~a~~ 209 (260)
T PRK07827 186 AD--------D-------VDAAVAALLADLRRGSPQGLA 209 (260)
T ss_pred hH--------H-------HHHHHHHHHHHHHhCCHHHHH
Confidence 62 1 334455555677777877653
No 96
>PLN02921 naphthoate synthase
Probab=98.50 E-value=2.8e-06 Score=92.71 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=104.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCC-CCCC-CHhHHHhc------h--HHH--HHHHHHHHhCCCCcEEEE
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTP-GAYA-DLKSEELG------Q--GEA--IAHNLRTMFGLKVPIISI 286 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTp-GA~~-g~~AEe~G------q--a~a--IAr~L~ams~l~VP~ISV 286 (773)
..+++++.+....++++.++. -.+-+|.|.-++ .++. |.+....+ . ... ....+..+..+++|+|+.
T Consensus 88 ~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 167 (327)
T PLN02921 88 RNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAM 167 (327)
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 356899999999999987654 456677776655 3332 33222111 0 111 122345677899999999
Q ss_pred EcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeee
Q 004120 287 VIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVI 356 (773)
Q Consensus 287 ViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~II 356 (773)
|.|.++|||......||++||.++++|+. +.|.++.............+.+. ..++|+++++.|+||+|+
T Consensus 168 VnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv 247 (327)
T PLN02921 168 VAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVV 247 (327)
T ss_pred ECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEe
Confidence 99999999999888999999999998876 22333322222222222223232 368999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 357 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 357 pE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
|. + .+.........+|...|+..+
T Consensus 248 ~~---------~----~l~~~a~~~a~~la~~~p~al 271 (327)
T PLN02921 248 PL---------D----ELEGETVKWCREILRNSPTAI 271 (327)
T ss_pred CH---------H----HHHHHHHHHHHHHHccCHHHH
Confidence 43 2 344445555567777777765
No 97
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=98.48 E-value=2.3e-06 Score=84.78 Aligned_cols=124 Identities=16% Similarity=0.085 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhhh-cCCc-EEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccc
Q 004120 226 HGYRKALRMMYYADH-HGFP-IVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCAN 303 (773)
Q Consensus 226 eg~rKA~R~m~lAek-f~LP-IVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD 303 (773)
-.+....+.++.|.+ -++. ||.-++++|..+.. ...+...+..+...++|+|+.|.|.+.|||++....||
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~-------~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D 94 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTA-------SEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPAN 94 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHH-------HHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCC
Confidence 345566666655544 3444 55557888854331 12455667777778999999999999999999999999
Q ss_pred eeeeecCCeeeeeCHH----HHHHHhh------------hhccCchHHHHH----hcccHHHHHHcCCceeee
Q 004120 304 KLLMLENAVFYVASPE----ACAAILW------------KSAKASPKAAEK----LKITGSELCKLQIADGVI 356 (773)
Q Consensus 304 ~Vlm~e~A~~sVisPE----gaAsIl~------------rd~~~a~eaAe~----lkitA~dL~~lGiVD~II 356 (773)
+++|.|+++|+..+.- .....+. ..........+. ..+++++.++.|+||+|.
T Consensus 95 ~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~ 167 (177)
T cd07014 95 YIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLG 167 (177)
T ss_pred EEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCC
Confidence 9999999999998763 2222222 111111112222 247999999999999999
No 98
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.48 E-value=4.7e-06 Score=87.11 Aligned_cols=160 Identities=19% Similarity=0.226 Sum_probs=102.7
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHhc-----h-----HHHHHHHHHHHhCCCCcEEEEEc
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG-----Q-----GEAIAHNLRTMFGLKVPIISIVI 288 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~G-----q-----a~aIAr~L~ams~l~VP~ISVVi 288 (773)
.+++++.+.....++..++. -++-+|.|.-.+.++. |.+..+.. . .....+.+..+..+++|+|+.|.
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 102 (249)
T PRK07938 23 NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVH 102 (249)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 56899999999999987654 4555666655443333 32221110 0 11223455677889999999999
Q ss_pred CCCccchhhhccccceeeeecCCeeee----eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCCceeeecCCC
Q 004120 289 GEGGSGGALAIGCANKLLMLENAVFYV----ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGVIPEPL 360 (773)
Q Consensus 289 Geg~GGGAlA~g~aD~Vlm~e~A~~sV----isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGiVD~IIpE~l 360 (773)
|.+.|||.-....||++|+.++++|+. +|.-+....+.+ ......+.+ ...++++++++.|+||+|+|
T Consensus 103 G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~~~~l~~-~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--- 178 (249)
T PRK07938 103 GFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALGAATHLQR-LVPQHLMRALFFTAATITAAELHHFGSVEEVVP--- 178 (249)
T ss_pred CEEeehHHHHHHhCCEEEEeCCCEeeCccceecCchhHHHHHH-hcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeC---
Confidence 999999999888999999999998775 111122222211 111112222 23789999999999999994
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 004120 361 GGAHADPSWTSQQIKIAINESMDELGKMDTQELL 394 (773)
Q Consensus 361 GgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~ 394 (773)
++ .+..........|...|+..+.
T Consensus 179 ------~~----~l~~~a~~~a~~la~~~~~a~~ 202 (249)
T PRK07938 179 ------RD----QLDEAALEVARKIAAKDTRVIR 202 (249)
T ss_pred ------HH----HHHHHHHHHHHHHHhCCHHHHH
Confidence 22 2444444555667777877753
No 99
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.45 E-value=1.4e-05 Score=83.24 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHHhhhcC--CcEEEEecCCCCCC-CHhHHHh-----------chHHHHHHHHHHHhCCCCcEEEEE
Q 004120 222 MPTPHGYRKALRMMYYADHHG--FPIVTFIDTPGAYA-DLKSEEL-----------GQGEAIAHNLRTMFGLKVPIISIV 287 (773)
Q Consensus 222 ~~~peg~rKA~R~m~lAekf~--LPIVtLIDTpGA~~-g~~AEe~-----------Gqa~aIAr~L~ams~l~VP~ISVV 287 (773)
++++..+....++++.++... ..+|.+...++++. |.+..+. .....+.+.+..+..+++|+|+.|
T Consensus 22 al~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 101 (239)
T PLN02267 22 RLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAV 101 (239)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 488999999999988776543 34555545443332 2221110 111223445667888999999999
Q ss_pred cCCCccchhhhccccceeeeec-CCeeee-------eCHHHHHHHhhhhccCchHHH-H----HhcccHHHHHHcCCcee
Q 004120 288 IGEGGSGGALAIGCANKLLMLE-NAVFYV-------ASPEACAAILWKSAKASPKAA-E----KLKITGSELCKLQIADG 354 (773)
Q Consensus 288 iGeg~GGGAlA~g~aD~Vlm~e-~A~~sV-------isPEgaAsIl~rd~~~a~eaA-e----~lkitA~dL~~lGiVD~ 354 (773)
.|.|.|||+.....||+++|.+ .++|+. ..|.++..++.+.. ....+. + ...++++++++.|+||+
T Consensus 102 ~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~v-G~~~a~~~llltG~~~~a~eA~~~Glv~~ 180 (239)
T PLN02267 102 TGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKI-GSPAARRDVLLRAAKLTAEEAVEMGIVDS 180 (239)
T ss_pred CCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHc-ChHHHHHHHHHcCCcCCHHHHHHCCCcce
Confidence 9999999998888899999985 566653 34666665555432 222221 2 24789999999999999
Q ss_pred eec
Q 004120 355 VIP 357 (773)
Q Consensus 355 IIp 357 (773)
|++
T Consensus 181 vv~ 183 (239)
T PLN02267 181 AHD 183 (239)
T ss_pred ecC
Confidence 994
No 100
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.44 E-value=7.6e-06 Score=85.59 Aligned_cols=137 Identities=19% Similarity=0.191 Sum_probs=98.9
Q ss_pred CCCCHHHHHHHHHHHHHhhhc-CCcEEEEecCCCCCC-CHhHHHh----------chHHHHHHHHHHHhCCCCcEEEEEc
Q 004120 221 GMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEEL----------GQGEAIAHNLRTMFGLKVPIISIVI 288 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAekf-~LPIVtLIDTpGA~~-g~~AEe~----------Gqa~aIAr~L~ams~l~VP~ISVVi 288 (773)
.+++++.+......+..++.- .+.+|.|.-.+.++. |.+-... .........+..+..++.|+|+.|.
T Consensus 27 Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 106 (257)
T COG1024 27 NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVN 106 (257)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEc
Confidence 579999999999999888765 788888887765333 3222211 1122334467888999999999999
Q ss_pred CCCccchhhhccccceeeeecCCeeee-------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCCceeeec
Q 004120 289 GEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGVIP 357 (773)
Q Consensus 289 Geg~GGGAlA~g~aD~Vlm~e~A~~sV-------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGiVD~IIp 357 (773)
|.+.|||.-....||+++|.++++|+. +++.|....+.+ ......+.+ ...++++++++.|+||.|++
T Consensus 107 G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r-~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 185 (257)
T COG1024 107 GYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPR-LLGRGRAKELLLTGEPISAAEALELGLVDEVVP 185 (257)
T ss_pred ceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHH-hcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeC
Confidence 999999999999999999999988775 332344444333 323333333 34789999999999999995
Q ss_pred C
Q 004120 358 E 358 (773)
Q Consensus 358 E 358 (773)
.
T Consensus 186 ~ 186 (257)
T COG1024 186 D 186 (257)
T ss_pred C
Confidence 3
No 101
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.41 E-value=5.4e-06 Score=88.67 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=99.0
Q ss_pred CCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-CHhHHHh----c------------------------h---H
Q 004120 220 FGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEEL----G------------------------Q---G 266 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAe-kf~LPIVtLIDTpGA~~-g~~AEe~----G------------------------q---a 266 (773)
..+++++.+....+.++.++ ...+-+|.|.-+++++. |.+..+. . . .
T Consensus 25 ~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (288)
T PRK08290 25 RNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREW 104 (288)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHHH
Confidence 35689999999999887665 34556666655544332 2111100 0 0 0
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeee----eCHHHHHHHhhhhccCchHHHH----H
Q 004120 267 EAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV----ASPEACAAILWKSAKASPKAAE----K 338 (773)
Q Consensus 267 ~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV----isPEgaAsIl~rd~~~a~eaAe----~ 338 (773)
..+...+..+..+++|+|+.|.|.|+|||.-....||++||.++++|+. +|--++....+........+.+ .
T Consensus 105 ~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~~~~~~~l~~~iG~~~A~~llltG 184 (288)
T PRK08290 105 EVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIPGVEYFAHPWELGPRKAKELLFTG 184 (288)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcCcchHHHHHHHhhHHHHHHHHHcC
Confidence 1122334567789999999999999999999888999999999988764 2211222222221111112222 2
Q ss_pred hcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 339 LKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 339 lkitA~dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
..++|+++++.|+||+|++. + .+..........|...|+..+
T Consensus 185 ~~i~A~eA~~~GLV~~vv~~---------~----~l~~~a~~~a~~la~~~~~a~ 226 (288)
T PRK08290 185 DRLTADEAHRLGMVNRVVPR---------D----ELEAETLELARRIAAMPPFGL 226 (288)
T ss_pred CCCCHHHHHHCCCccEeeCH---------H----HHHHHHHHHHHHHHhCCHHHH
Confidence 36899999999999999942 2 233344445555666665554
No 102
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.41 E-value=1.1e-05 Score=86.51 Aligned_cols=137 Identities=15% Similarity=0.115 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHHHHhhh------cCCcEEEEecC-CCCCC-CHhHHHh------c----h---HHHHHHHHHHHh--
Q 004120 221 GMPTPHGYRKALRMMYYADH------HGFPIVTFIDT-PGAYA-DLKSEEL------G----Q---GEAIAHNLRTMF-- 277 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek------f~LPIVtLIDT-pGA~~-g~~AEe~------G----q---a~aIAr~L~ams-- 277 (773)
.+++++.+......++.++. -.+-+|.|.-. ++++. |.+..+. + + ...+...+..+.
T Consensus 38 Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (287)
T PRK08788 38 PCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRG 117 (287)
T ss_pred CCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999988876654 34555666554 33332 3221110 0 0 111122222222
Q ss_pred -CCCCcEEEEEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHH
Q 004120 278 -GLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSEL 346 (773)
Q Consensus 278 -~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL 346 (773)
.+++|+|+.|.|.|+|||.-....||+++|.++++|+. +.|.++...++........+.+. ..++++++
T Consensus 118 ~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA 197 (287)
T PRK08788 118 FGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEEL 197 (287)
T ss_pred cCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHH
Confidence 68999999999999999998888999999999998775 34444333333322222333332 36899999
Q ss_pred HHcCCceeeec
Q 004120 347 CKLQIADGVIP 357 (773)
Q Consensus 347 ~~lGiVD~IIp 357 (773)
++.|+||.|+|
T Consensus 198 ~~~GLV~~vv~ 208 (287)
T PRK08788 198 HDMGLVDVLVE 208 (287)
T ss_pred HHCCCCcEecC
Confidence 99999999995
No 103
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.40 E-value=7.3e-06 Score=89.80 Aligned_cols=137 Identities=12% Similarity=0.054 Sum_probs=91.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCC-CCC-CCHhHHHh-------------chHHHHHHHHHHHhCCCCcE
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTP-GAY-ADLKSEEL-------------GQGEAIAHNLRTMFGLKVPI 283 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTp-GA~-~g~~AEe~-------------Gqa~aIAr~L~ams~l~VP~ 283 (773)
..+++++......++++.++. -.+-+|.|.-++ +++ .|.+..+. .......+.+..+..+++|+
T Consensus 24 ~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv 103 (342)
T PRK05617 24 LNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPY 103 (342)
T ss_pred ccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCE
Confidence 356889999999998876654 445566666655 233 23222111 00111223455677889999
Q ss_pred EEEEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCce
Q 004120 284 ISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIAD 353 (773)
Q Consensus 284 ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD 353 (773)
|+.|.|.+.|||+-....||+++|.++|+|+. +.|.++.+..+...-. ..+.+. ..++|+++++.|+||
T Consensus 104 IAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~ 182 (342)
T PRK05617 104 IALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLAD 182 (342)
T ss_pred EEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcc
Confidence 99999999999998888999999999998875 4455444443322211 222222 368999999999999
Q ss_pred eeec
Q 004120 354 GVIP 357 (773)
Q Consensus 354 ~IIp 357 (773)
.|+|
T Consensus 183 ~vv~ 186 (342)
T PRK05617 183 HFVP 186 (342)
T ss_pred eecC
Confidence 9995
No 104
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.35 E-value=1.6e-05 Score=83.10 Aligned_cols=134 Identities=10% Similarity=-0.001 Sum_probs=87.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh------chHHHHHHHHHHHhCCCCcEEEEEcCCC
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------GQGEAIAHNLRTMFGLKVPIISIVIGEG 291 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~------Gqa~aIAr~L~ams~l~VP~ISVViGeg 291 (773)
..+++++.+....+.++.++. -.+-+|.|.-++.++. |.+..+. .........+..+..++.|+|+.|.|.+
T Consensus 21 ~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 100 (248)
T PRK06072 21 LNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVT 100 (248)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 357899999999999987764 3345666655443333 3322211 1112233445667789999999999999
Q ss_pred ccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCCcee
Q 004120 292 GSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADG 354 (773)
Q Consensus 292 ~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGiVD~ 354 (773)
.|||......||++||.+++.|++ +.|.++...++..... ..+.+ ...++|+++++.|+||.
T Consensus 101 ~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g-~~a~~lll~g~~~~a~eA~~~Glv~~ 172 (248)
T PRK06072 101 AGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTG-QRFYEILVLGGEFTAEEAERWGLLKI 172 (248)
T ss_pred ehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhh-HHHHHHHHhCCccCHHHHHHCCCccc
Confidence 999988888899999999988764 2333333333222222 12222 23689999999999995
No 105
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.29 E-value=1.5e-05 Score=87.98 Aligned_cols=147 Identities=18% Similarity=0.124 Sum_probs=99.9
Q ss_pred CCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCC-CCC-CHhHHH------------hchHHHHHHHHHHHhCCCCcEEE
Q 004120 221 GMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPG-AYA-DLKSEE------------LGQGEAIAHNLRTMFGLKVPIIS 285 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAe-kf~LPIVtLIDTpG-A~~-g~~AEe------------~Gqa~aIAr~L~ams~l~VP~IS 285 (773)
.+++++.+.....+++.++ .-.+-+|.|.-+++ +++ |.+..+ ........+++..+..+++|+|+
T Consensus 50 NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIA 129 (360)
T TIGR03200 50 NSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVIC 129 (360)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 3689999999999997665 45677888876663 333 321111 01111223455667788999999
Q ss_pred EEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceee
Q 004120 286 IVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGV 355 (773)
Q Consensus 286 VViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~I 355 (773)
.|.|.|.|||.-....||++++.++|.|+. +.|.++++...........+.+. ..++|+++++.|+||.|
T Consensus 130 AVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~V 209 (360)
T TIGR03200 130 RVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDV 209 (360)
T ss_pred EECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChhee
Confidence 999999999988888899999999999886 44555444433333222333332 25899999999999999
Q ss_pred ecCC--CCCCCCCh
Q 004120 356 IPEP--LGGAHADP 367 (773)
Q Consensus 356 IpE~--lGgAh~dP 367 (773)
+|.. .|...++|
T Consensus 210 Vp~~~~~~~~~~~~ 223 (360)
T TIGR03200 210 VPALKVDGKFVANP 223 (360)
T ss_pred cCchhcCcchhcCc
Confidence 9743 25556666
No 106
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=98.26 E-value=7e-06 Score=79.53 Aligned_cols=90 Identities=24% Similarity=0.321 Sum_probs=68.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcC--CcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhh
Q 004120 220 FGMPTPHGYRKALRMMYYADHHG--FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGAL 297 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAekf~--LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAl 297 (773)
.|.+++..+....+.++.++... .+||.-+++||..+.. +..+...+. .++.|+|+.+.|.+.|+|++
T Consensus 5 ~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~-------~~~i~~~l~---~~~kpvva~~~g~~~s~g~~ 74 (161)
T cd00394 5 NGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDA-------GMNIVDALQ---ASRKPVIAYVGGQAASAGYY 74 (161)
T ss_pred EeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHH-------HHHHHHHHH---HhCCCEEEEECChhHHHHHH
Confidence 46677888888888888776533 5777779999864321 123444443 45689999999999999999
Q ss_pred hccccceeeeecCCeeeeeCHH
Q 004120 298 AIGCANKLLMLENAVFYVASPE 319 (773)
Q Consensus 298 A~g~aD~Vlm~e~A~~sVisPE 319 (773)
..+.||.++|.|++.+++.+|-
T Consensus 75 la~~~d~~~~~~~a~~~~~g~~ 96 (161)
T cd00394 75 IATAANKIVMAPGTRVGSHGPI 96 (161)
T ss_pred HHhCCCEEEECCCCEEEEeeeE
Confidence 9899999999999999986653
No 107
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.23 E-value=6.2e-06 Score=84.63 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=91.4
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhhc--CCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCcc
Q 004120 216 IQRNFGMPTPHGYRKALRMMYYADHH--GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGS 293 (773)
Q Consensus 216 ~~~ngG~~~peg~rKA~R~m~lAekf--~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~G 293 (773)
+-+.+|.+++..+....+.+..++.. .-||+..|+|||-.+. ........|...+.|+++++.|.+.|
T Consensus 37 ~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~----------~g~~I~d~i~~~~~~v~t~~~G~aaS 106 (207)
T PRK12553 37 IIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVT----------AGDAIYDTIQFIRPDVQTVCTGQAAS 106 (207)
T ss_pred EEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHH----------HHHHHHHHHHhcCCCcEEEEEeehhh
Confidence 33556778899888888887766543 5799999999995432 22233444555678999999999999
Q ss_pred chhhhccccc--eeeeecCCeeeeeCHH--HH----H------------------HHhhhhccCch-HHHH----Hhccc
Q 004120 294 GGALAIGCAN--KLLMLENAVFYVASPE--AC----A------------------AILWKSAKASP-KAAE----KLKIT 342 (773)
Q Consensus 294 GGAlA~g~aD--~Vlm~e~A~~sVisPE--ga----A------------------sIl~rd~~~a~-eaAe----~lkit 342 (773)
.|++.+..|| .++|.|++.+.+-.|. +. + .+.-....... +..+ ..-+|
T Consensus 107 aa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lt 186 (207)
T PRK12553 107 AGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLT 186 (207)
T ss_pred HHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccc
Confidence 9999988888 5899999999887775 20 1 11101111111 1111 12479
Q ss_pred HHHHHHcCCceeeec
Q 004120 343 GSELCKLQIADGVIP 357 (773)
Q Consensus 343 A~dL~~lGiVD~IIp 357 (773)
|++.++.|+||.|+.
T Consensus 187 a~EA~e~GliD~I~~ 201 (207)
T PRK12553 187 AEEAKDYGLVDQIIT 201 (207)
T ss_pred HHHHHHcCCccEEcC
Confidence 999999999999994
No 108
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.23 E-value=2e-05 Score=84.78 Aligned_cols=159 Identities=14% Similarity=0.221 Sum_probs=100.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHH-----------hc---hHHHH----------HHHH
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEE-----------LG---QGEAI----------AHNL 273 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe-----------~G---qa~aI----------Ar~L 273 (773)
..+++++.+.....+++.++. -.+-+|.|.-.+.+++ |.+... .+ ....+ ...+
T Consensus 26 ~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (298)
T PRK12478 26 LNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKF 105 (298)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchhhhhhhhhhhcchHHHH
Confidence 356899999999999987654 5667777766554433 211100 00 00111 1234
Q ss_pred HHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeeee-----CHHHHHHHhhhhccCchHHHHH----hcccHH
Q 004120 274 RTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVA-----SPEACAAILWKSAKASPKAAEK----LKITGS 344 (773)
Q Consensus 274 ~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sVi-----sPEgaAsIl~rd~~~a~eaAe~----lkitA~ 344 (773)
..+..+++|+|+.|.|.|+|||.-....||++||.++|+|+.- +.-.....++ ......+.+. ..++|+
T Consensus 106 ~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~~~~~~--~vG~~~A~~llltg~~i~A~ 183 (298)
T PRK12478 106 MAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGMWLY--RLSLAKVKWHSLTGRPLTGV 183 (298)
T ss_pred HHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCchhHHHH--HhhHHHHHHHHHcCCccCHH
Confidence 5677899999999999999999998889999999999988751 1111111111 1122222232 368999
Q ss_pred HHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 345 ELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 345 dL~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
++++.|+|++|+|.. .+..........|...|+..+
T Consensus 184 eA~~~GLV~~vv~~~-------------~l~~~a~~~a~~la~~~p~a~ 219 (298)
T PRK12478 184 QAAEAELINEAVPFE-------------RLEARVAEVATELARIPLSQL 219 (298)
T ss_pred HHHHcCCcceecCHH-------------HHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999532 233344444455666666654
No 109
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.19 E-value=6.5e-05 Score=83.59 Aligned_cols=136 Identities=11% Similarity=0.079 Sum_probs=91.9
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh------c-h-HHHH---HHHHHHHhCCCCcEEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------G-Q-GEAI---AHNLRTMFGLKVPIISIV 287 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~------G-q-a~aI---Ar~L~ams~l~VP~ISVV 287 (773)
.+++.+......++++.++. -.+-+|.|.-.++++. |.+..+. + . .... ...+..+..++.|+|+.|
T Consensus 33 Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV 112 (379)
T PLN02874 33 NVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALV 112 (379)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 46889999999999987654 4567777766554443 3221111 1 0 1111 122456778899999999
Q ss_pred cCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeeec
Q 004120 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIP 357 (773)
Q Consensus 288 iGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~IIp 357 (773)
.|.+.|||.-....||++||.++++|+. +.|.++.+.+...... ..+.+. ..+++.++++.|+||.|+|
T Consensus 113 ~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g-~~a~~l~ltG~~i~a~eA~~~GLv~~vv~ 191 (379)
T PLN02874 113 HGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPG-HLGEYLALTGARLNGKEMVACGLATHFVP 191 (379)
T ss_pred cCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhH-HHHHHHHHcCCcccHHHHHHcCCccEEeC
Confidence 9999999998888899999999988875 4455444443332211 122222 3689999999999999995
No 110
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.14 E-value=7.5e-05 Score=83.85 Aligned_cols=136 Identities=15% Similarity=0.122 Sum_probs=90.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHH------hchH---H----HHHHHHHHHhCCCCcEE
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEE------LGQG---E----AIAHNLRTMFGLKVPII 284 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe------~Gqa---~----aIAr~L~ams~l~VP~I 284 (773)
..+++.+.+....++++.++. ..+-+|.|.-.+.+++ |.+..+ .+.. . ...+....+..+++|+|
T Consensus 58 lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvI 137 (401)
T PLN02157 58 LNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHV 137 (401)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 357999999999998876544 5556666655444444 222111 1110 1 11223456788999999
Q ss_pred EEEcCCCccchhhhccccceeeeecCCeeee------eCHHHH-HHHhhhhccCchHHHHH-----hcccHHHHHHcCCc
Q 004120 285 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEAC-AAILWKSAKASPKAAEK-----LKITGSELCKLQIA 352 (773)
Q Consensus 285 SVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEga-AsIl~rd~~~a~eaAe~-----lkitA~dL~~lGiV 352 (773)
+.|-|.+.|||.-....||++++.+++.|+. +.|.+. ...+.+-.- ..+.. ..+++.++++.|++
T Consensus 138 A~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G---~~a~~L~LTG~~i~A~eA~~~GLv 214 (401)
T PLN02157 138 AILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPG---RLGEYLGLTGLKLSGAEMLACGLA 214 (401)
T ss_pred EEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhh---HHHHHHHHcCCcCCHHHHHHcCCc
Confidence 9999999999999888999999999988775 334433 333443221 12222 36899999999999
Q ss_pred eeeecC
Q 004120 353 DGVIPE 358 (773)
Q Consensus 353 D~IIpE 358 (773)
|.|+|.
T Consensus 215 ~~vVp~ 220 (401)
T PLN02157 215 THYIRS 220 (401)
T ss_pred eEEeCH
Confidence 999954
No 111
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.13 E-value=8.8e-05 Score=83.47 Aligned_cols=167 Identities=16% Similarity=0.076 Sum_probs=105.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh------c---h----HHHHHHHHHHHhCCCCcEE
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------G---Q----GEAIAHNLRTMFGLKVPII 284 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~------G---q----a~aIAr~L~ams~l~VP~I 284 (773)
..+++.+.++...+.++.++. -.+-+|.|.-.+++++ |.+.... + . ..........+..+++|+|
T Consensus 63 lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvI 142 (407)
T PLN02851 63 LNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNV 142 (407)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 357999999999999976654 5666666655444444 2211110 1 0 1122334445678899999
Q ss_pred EEEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHH-hhhhccCc-hHH-HHHhcccHHHHHHcCCceee
Q 004120 285 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAI-LWKSAKAS-PKA-AEKLKITGSELCKLQIADGV 355 (773)
Q Consensus 285 SVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsI-l~rd~~~a-~ea-Ae~lkitA~dL~~lGiVD~I 355 (773)
++|-|.+.|||+-....||++++.++++|+. +.|.+.++. +.+-.... ... --...+++.++++.|++|.+
T Consensus 143 A~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~~L~LTG~~i~a~eA~~~GLa~~~ 222 (407)
T PLN02851 143 AIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHY 222 (407)
T ss_pred EEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHHHHHHhCCcCCHHHHHHCCCceee
Confidence 9999999999999888999999999988775 445544443 33322111 111 11236899999999999999
Q ss_pred ecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004120 356 IPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKF 401 (773)
Q Consensus 356 IpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~R~~k~ 401 (773)
||.. .+ ..+...|.++..-++.. +..-.++|
T Consensus 223 v~~~-------------~l-~~l~~~l~~~~~~~~~~-~~~~l~~~ 253 (407)
T PLN02851 223 CLNA-------------RL-PLIEERLGKLLTDDPAV-IEDSLAQY 253 (407)
T ss_pred cCHh-------------hH-HHHHHHHHhhccCCHHH-HHHHHHHh
Confidence 9532 23 44555555555444444 45555665
No 112
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.11 E-value=2e-05 Score=80.55 Aligned_cols=131 Identities=21% Similarity=0.233 Sum_probs=86.3
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhh--cCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccc
Q 004120 217 QRNFGMPTPHGYRKALRMMYYADH--HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSG 294 (773)
Q Consensus 217 ~~ngG~~~peg~rKA~R~m~lAek--f~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GG 294 (773)
-+.+|.+++.......+-+...+. ..-||+.+|+|||-.+.. | -+|. ..|...+.|+++++.|.|.|.
T Consensus 34 i~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~-----g--~~I~---d~i~~~~~~v~t~~~G~aaS~ 103 (200)
T PRK00277 34 IFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTA-----G--LAIY---DTMQFIKPDVSTICIGQAASM 103 (200)
T ss_pred EEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHH-----H--HHHH---HHHHhcCCCEEEEEEeEeccH
Confidence 355677888887777666655543 357999999999954321 1 1233 344556789999999999999
Q ss_pred hhhhcccc--ceeeeecCCeeeeeCHHHHH----H------------------HhhhhccCch-HHHHH----hcccHHH
Q 004120 295 GALAIGCA--NKLLMLENAVFYVASPEACA----A------------------ILWKSAKASP-KAAEK----LKITGSE 345 (773)
Q Consensus 295 GAlA~g~a--D~Vlm~e~A~~sVisPEgaA----s------------------Il~rd~~~a~-eaAe~----lkitA~d 345 (773)
|++.+..+ +.++|+|++.+.+-.|-+.. . +.-....... +..+. .-++|++
T Consensus 104 a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~E 183 (200)
T PRK00277 104 GAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEE 183 (200)
T ss_pred HHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHH
Confidence 98876544 57999999999887664321 0 0000000111 11111 2479999
Q ss_pred HHHcCCceeeec
Q 004120 346 LCKLQIADGVIP 357 (773)
Q Consensus 346 L~~lGiVD~IIp 357 (773)
.++.|+||+|+.
T Consensus 184 A~e~GliD~Ii~ 195 (200)
T PRK00277 184 AKEYGLIDEVLT 195 (200)
T ss_pred HHHcCCccEEee
Confidence 999999999994
No 113
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.04 E-value=5.5e-05 Score=87.96 Aligned_cols=160 Identities=9% Similarity=0.030 Sum_probs=100.9
Q ss_pred CCCCHHHHHHHHHHHHHhhh--cCCcEEEEecCCC-CCC-CHhH--HH-------hchHHHHHHHHHHHhCCCCcEEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH--HGFPIVTFIDTPG-AYA-DLKS--EE-------LGQGEAIAHNLRTMFGLKVPIISIV 287 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek--f~LPIVtLIDTpG-A~~-g~~A--Ee-------~Gqa~aIAr~L~ams~l~VP~ISVV 287 (773)
.+++++.++....++..++. ..+-+|.|.-.++ +++ |.+. .. ........+.+..+..+++|+|+.|
T Consensus 297 Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 376 (550)
T PRK08184 297 AWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALI 376 (550)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67899999999999987653 4666666666442 232 3221 00 1111223345667888999999999
Q ss_pred c-CCCccch-hhhccccceeeee-------cCCeeee------eCHH-HHHHHhhhhccCchHHHHH------hcccHHH
Q 004120 288 I-GEGGSGG-ALAIGCANKLLML-------ENAVFYV------ASPE-ACAAILWKSAKASPKAAEK------LKITGSE 345 (773)
Q Consensus 288 i-Geg~GGG-AlA~g~aD~Vlm~-------e~A~~sV------isPE-gaAsIl~rd~~~a~eaAe~------lkitA~d 345 (773)
. |.|.||| .-....||++||. +++.|+. +.|. |....+.+..-..+.+.+. ..++|++
T Consensus 377 ~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~e 456 (550)
T PRK08184 377 EPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADA 456 (550)
T ss_pred CCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHH
Confidence 7 9999999 5555569999999 8888775 3343 3333333321222333332 3689999
Q ss_pred HHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 346 LCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 346 L~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
+++.|+|++|+|.. .+.........+|...||..+
T Consensus 457 A~~~GLv~~vv~~~-------------~l~~~a~~~a~~ia~~~p~a~ 491 (550)
T PRK08184 457 AEELGLVTAAPDDI-------------DWEDEVRIALEERASLSPDAL 491 (550)
T ss_pred HHHcCCcccccChH-------------HHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999532 233334444455666665553
No 114
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.04 E-value=0.0001 Score=88.20 Aligned_cols=137 Identities=11% Similarity=0.068 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh------------chHHHHHHHHHHHhCCCCcEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------------GQGEAIAHNLRTMFGLKVPIISI 286 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~------------Gqa~aIAr~L~ams~l~VP~ISV 286 (773)
.+++.+.+.....+++.++. -.+-+|.|.-++++++ |.+..+. .....+...+..+..+++|+|+.
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 108 (715)
T PRK11730 29 NKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAA 108 (715)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 46889999888888876653 4566777766554443 3222111 11122334566788899999999
Q ss_pred EcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceeee
Q 004120 287 VIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVI 356 (773)
Q Consensus 287 ViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~II 356 (773)
|.|.|.|||.-....||+++|.++++|+. +.|.++....+........+.+. ..++|+++++.|+||.|+
T Consensus 109 v~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv 188 (715)
T PRK11730 109 INGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVV 188 (715)
T ss_pred ECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEec
Confidence 99999999999888999999999998876 34555554444333233333332 368999999999999999
Q ss_pred c
Q 004120 357 P 357 (773)
Q Consensus 357 p 357 (773)
|
T Consensus 189 ~ 189 (715)
T PRK11730 189 A 189 (715)
T ss_pred C
Confidence 4
No 115
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=98.01 E-value=0.00015 Score=81.04 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=89.4
Q ss_pred CCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-CHhHHHh------ch---HHHHH----HHHHHHhCCCCcEEE
Q 004120 221 GMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEEL------GQ---GEAIA----HNLRTMFGLKVPIIS 285 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAe-kf~LPIVtLIDTpGA~~-g~~AEe~------Gq---a~aIA----r~L~ams~l~VP~IS 285 (773)
.+++.+.++...+.++-++ .-.+-+|.|.-++.+++ |.+..+. +. ....+ .....+..+++|+|+
T Consensus 31 NALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa 110 (381)
T PLN02988 31 NALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVS 110 (381)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 4689999999998887654 44566676665553444 3221111 10 01111 234466789999999
Q ss_pred EEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHH-hhhhccCc-hHH-HHHhcccHHHHHHcCCceeee
Q 004120 286 IVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAI-LWKSAKAS-PKA-AEKLKITGSELCKLQIADGVI 356 (773)
Q Consensus 286 VViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsI-l~rd~~~a-~ea-Ae~lkitA~dL~~lGiVD~II 356 (773)
+|-|.+.|||.-....||++++.++++|+. +.|.+..+. +.+-.-.. ... --...+++.++++.|++|.|+
T Consensus 111 ~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~~~l~LTG~~i~a~eA~~~GLv~~vv 190 (381)
T PLN02988 111 ILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFV 190 (381)
T ss_pred EecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHcCCceEec
Confidence 999999999998888899999999988775 334443333 33221110 011 112368999999999999999
Q ss_pred cC
Q 004120 357 PE 358 (773)
Q Consensus 357 pE 358 (773)
|.
T Consensus 191 ~~ 192 (381)
T PLN02988 191 PS 192 (381)
T ss_pred CH
Confidence 53
No 116
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.01 E-value=5e-05 Score=77.60 Aligned_cols=130 Identities=20% Similarity=0.132 Sum_probs=86.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhh--cCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccch
Q 004120 218 RNFGMPTPHGYRKALRMMYYADH--HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGG 295 (773)
Q Consensus 218 ~ngG~~~peg~rKA~R~m~lAek--f~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGG 295 (773)
+.+|.+++..+.-..+-+..++. ..-||+..|+|||-.+. +.......|...+.|+++++.|.+.|.|
T Consensus 27 ~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~----------ag~aI~d~i~~~~~~V~t~v~G~AaSaa 96 (197)
T PRK14512 27 VIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDID----------AGFAIFNMIRFVKPKVFTIGVGLVASAA 96 (197)
T ss_pred EECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHH----------HHHHHHHHHHhCCCCEEEEEEeeeHhHH
Confidence 44566777777777776655543 35899999999995432 2222334444577899999999999999
Q ss_pred hhhccccce--eeeecCCeeeeeCHHHH----HHHhhhhc------------------cCchHHHH-----HhcccHHHH
Q 004120 296 ALAIGCANK--LLMLENAVFYVASPEAC----AAILWKSA------------------KASPKAAE-----KLKITGSEL 346 (773)
Q Consensus 296 AlA~g~aD~--Vlm~e~A~~sVisPEga----AsIl~rd~------------------~~a~eaAe-----~lkitA~dL 346 (773)
++.++.||. .+|.||+.+.+.-|-+. +.-+.... -+-.+..+ ..-+||++.
T Consensus 97 slIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA 176 (197)
T PRK14512 97 ALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSA 176 (197)
T ss_pred HHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHH
Confidence 999888874 78899999888766532 11111000 00011111 134789999
Q ss_pred HHcCCceeeec
Q 004120 347 CKLQIADGVIP 357 (773)
Q Consensus 347 ~~lGiVD~IIp 357 (773)
++.|+||.|++
T Consensus 177 ~~yGliD~I~~ 187 (197)
T PRK14512 177 VKYGLVFEVVE 187 (197)
T ss_pred HHcCCccEeec
Confidence 99999999994
No 117
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.00 E-value=5.2e-05 Score=74.90 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=67.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhc--CCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchh
Q 004120 219 NFGMPTPHGYRKALRMMYYADHH--GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGA 296 (773)
Q Consensus 219 ngG~~~peg~rKA~R~m~lAekf--~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGA 296 (773)
..|.+++..+....+.+..++.. .-||+..|||||-.+.. +.+|... +...+.|+++++.|.|.|+|+
T Consensus 5 i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~-------~~~i~~~---i~~~~~~v~~~~~g~aaS~~~ 74 (162)
T cd07013 5 LTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFA-------GMAIYDT---IKFIKADVVTIIDGLAASMGS 74 (162)
T ss_pred EccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHH-------HHHHHHH---HHhcCCCceEEEEeehhhHHH
Confidence 45667788888887777766543 37999999999965321 1234444 444678999999999999999
Q ss_pred hhccccc--eeeeecCCeeeeeCHH
Q 004120 297 LAIGCAN--KLLMLENAVFYVASPE 319 (773)
Q Consensus 297 lA~g~aD--~Vlm~e~A~~sVisPE 319 (773)
+.++.+| ..++.|++.+.+-.|-
T Consensus 75 ~i~~a~~~g~r~~~p~a~~~ih~~~ 99 (162)
T cd07013 75 VIAMAGAKGKRFILPNAMMMIHQPW 99 (162)
T ss_pred HHHHcCCCCcEEEecCEEEEEccCc
Confidence 9998898 6888889988875553
No 118
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=97.98 E-value=7.2e-05 Score=79.83 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=102.4
Q ss_pred CeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHh-hhcCCcEEEEecCCCCCCC-HhHHHhch-------HHH
Q 004120 198 GRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYA-DHHGFPIVTFIDTPGAYAD-LKSEELGQ-------GEA 268 (773)
Q Consensus 198 GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lA-ekf~LPIVtLIDTpGA~~g-~~AEe~Gq-------a~a 268 (773)
+..|++|+-++. -.-.++.+.......+.+... ..-..|+|.|.-.++++++ .+.++.-. ...
T Consensus 44 d~~I~lItlNRP--------~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~ 115 (290)
T KOG1680|consen 44 DNGIALITLNRP--------KALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGI 115 (290)
T ss_pred CCCeEEEEeCCh--------HHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccccccc
Confidence 457788887763 122446666666655555433 4466899999999998874 33332211 112
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeeeeCHH-------HHHHHhhhhccCchHHHH----
Q 004120 269 IAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPE-------ACAAILWKSAKASPKAAE---- 337 (773)
Q Consensus 269 IAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sVisPE-------gaAsIl~rd~~~a~eaAe---- 337 (773)
.-+....++..+.|+|+.|.|-+.|||.-....||+++|.++|.|++..++ |....+- ..-....|-+
T Consensus 116 ~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~-r~vG~s~Ale~~lt 194 (290)
T KOG1680|consen 116 FLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLP-RIVGKSRALEMILT 194 (290)
T ss_pred ccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHH-HHhChHHHHHHHHh
Confidence 334455566789999999999999999998889999999999998874433 2222221 1112222333
Q ss_pred HhcccHHHHHHcCCceeeecCC
Q 004120 338 KLKITGSELCKLQIADGVIPEP 359 (773)
Q Consensus 338 ~lkitA~dL~~lGiVD~IIpE~ 359 (773)
..+++|++..+.|+|+.|+|+.
T Consensus 195 g~~~~AqeA~~~GlVn~Vvp~~ 216 (290)
T KOG1680|consen 195 GRRLGAQEAKKIGLVNKVVPSG 216 (290)
T ss_pred cCcccHHHHHhCCceeEeecch
Confidence 3579999999999999999764
No 119
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.91 E-value=0.00034 Score=84.10 Aligned_cols=138 Identities=13% Similarity=0.134 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHHHHhhhc-CCc-EEEEecCCCCCC-CHhHHHh----------chHHHHHHHHHHHhCCCCcEEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADHH-GFP-IVTFIDTPGAYA-DLKSEEL----------GQGEAIAHNLRTMFGLKVPIISIV 287 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAekf-~LP-IVtLIDTpGA~~-g~~AEe~----------Gqa~aIAr~L~ams~l~VP~ISVV 287 (773)
.+++++...-...+++.++.. .+- ||.+...+++++ |.+..+. .......+.+..+..+++|+|+.|
T Consensus 36 Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav 115 (737)
T TIGR02441 36 NTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAI 115 (737)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 568899999888888877643 333 334455554443 2222211 111233455667888999999999
Q ss_pred cCCCccchhhhccccceeeeecCC--eeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceee
Q 004120 288 IGEGGSGGALAIGCANKLLMLENA--VFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGV 355 (773)
Q Consensus 288 iGeg~GGGAlA~g~aD~Vlm~e~A--~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~I 355 (773)
.|.|.|||.-....||+++|.+++ +|+. +.|.+.....+........+.+. ..++++++++.|+||+|
T Consensus 116 ~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~v 195 (737)
T TIGR02441 116 SGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQL 195 (737)
T ss_pred CCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEe
Confidence 999999999988889999999984 5543 22332222222222222223232 36899999999999999
Q ss_pred ecC
Q 004120 356 IPE 358 (773)
Q Consensus 356 IpE 358 (773)
++.
T Consensus 196 v~~ 198 (737)
T TIGR02441 196 VDP 198 (737)
T ss_pred cCC
Confidence 963
No 120
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=97.90 E-value=0.00011 Score=75.65 Aligned_cols=91 Identities=16% Similarity=0.118 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhhc-CCc-EEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhh
Q 004120 220 FGMPTPHGYRKALRMMYYADHH-GFP-IVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGAL 297 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAekf-~LP-IVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAl 297 (773)
++..++.+++...+.++.|.+. ++- ||.-+|+||+. ... ...+.+.+..+...+.|+|+.+-| +.|||++
T Consensus 23 ~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~-~~~------~~el~~~i~~~~~~~kpVia~~~~-~~sggy~ 94 (222)
T cd07018 23 GGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGG-LAK------LEELRQALERFRASGKPVIAYADG-YSQGQYY 94 (222)
T ss_pred cCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCC-HHH------HHHHHHHHHHHHHhCCeEEEEeCC-CCchhhh
Confidence 3555677788888888877654 344 55558999983 222 334667777777678999999887 7788888
Q ss_pred hccccceeeeecCCeeeeeCH
Q 004120 298 AIGCANKLLMLENAVFYVASP 318 (773)
Q Consensus 298 A~g~aD~Vlm~e~A~~sVisP 318 (773)
..+.||.++|.|++.++.+|.
T Consensus 95 lasaad~I~a~p~~~vg~iGv 115 (222)
T cd07018 95 LASAADEIYLNPSGSVELTGL 115 (222)
T ss_pred hhhhCCEEEECCCceEEeecc
Confidence 888899999999999888654
No 121
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.89 E-value=9.1e-05 Score=76.03 Aligned_cols=134 Identities=16% Similarity=0.113 Sum_probs=91.3
Q ss_pred ccccccCCCCCHHHHHHHHHH-HHHhh-hcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCC
Q 004120 214 ENIQRNFGMPTPHGYRKALRM-MYYAD-HHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEG 291 (773)
Q Consensus 214 e~~~~ngG~~~peg~rKA~R~-m~lAe-kf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg 291 (773)
+|+-+.+|.+.++.+.....- +.+.. .-.-||..+|+|||-.+.. .......|...+.|+.+++.|.+
T Consensus 30 ~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~----------g~aIyd~m~~~~~~V~Tv~~G~A 99 (200)
T CHL00028 30 ERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVIS----------GLAIYDTMQFVKPDVHTICLGLA 99 (200)
T ss_pred CCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhh----------HHHHHHHHHhcCCCEEEEEEEeh
Confidence 445566788888887766544 45553 3468999999999955332 22344556667899999999999
Q ss_pred ccchhhhccccc--eeeeecCCeeeeeCHHHH-----HHHhhhhcc------------------Cc-hHHH----HHhcc
Q 004120 292 GSGGALAIGCAN--KLLMLENAVFYVASPEAC-----AAILWKSAK------------------AS-PKAA----EKLKI 341 (773)
Q Consensus 292 ~GGGAlA~g~aD--~Vlm~e~A~~sVisPEga-----AsIl~rd~~------------------~a-~eaA----e~lki 341 (773)
.|.|++.++.+| .++|.||+++.+--|.+. +.-+..... +. .+.. ...-+
T Consensus 100 aS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~l 179 (200)
T CHL00028 100 ASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVFM 179 (200)
T ss_pred HHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccC
Confidence 999999988887 689999999988666542 111111110 00 1111 11347
Q ss_pred cHHHHHHcCCceeeec
Q 004120 342 TGSELCKLQIADGVIP 357 (773)
Q Consensus 342 tA~dL~~lGiVD~IIp 357 (773)
||++.++.|+||.|+.
T Consensus 180 ta~EA~eyGliD~I~~ 195 (200)
T CHL00028 180 SATEAKAYGIVDLVAV 195 (200)
T ss_pred CHHHHHHcCCCcEEee
Confidence 9999999999999993
No 122
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.88 E-value=0.00037 Score=83.38 Aligned_cols=137 Identities=12% Similarity=0.135 Sum_probs=87.8
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCC-CCCC-CHhHHHh------c----hHHHHHHHHHHHhCCCCcEEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTP-GAYA-DLKSEEL------G----QGEAIAHNLRTMFGLKVPIISIV 287 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLIDTp-GA~~-g~~AEe~------G----qa~aIAr~L~ams~l~VP~ISVV 287 (773)
.+++++.+.....+++.++. ..+-+|.|.-.+ ++++ |.+..+. . ........+..+..+++|+|+.|
T Consensus 29 Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV 108 (708)
T PRK11154 29 NTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAI 108 (708)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 46889999999998876654 345555554332 2332 3222111 0 11122335667888999999999
Q ss_pred cCCCccchhhhccccceeeeecCC--eeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceee
Q 004120 288 IGEGGSGGALAIGCANKLLMLENA--VFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGV 355 (773)
Q Consensus 288 iGeg~GGGAlA~g~aD~Vlm~e~A--~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~I 355 (773)
.|.|.|||.-....||+++|.+++ +|+. +.|.+.....+........+.+. ..++|+++++.|+||+|
T Consensus 109 ~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~v 188 (708)
T PRK11154 109 HGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDV 188 (708)
T ss_pred CCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEe
Confidence 999999998888889999999975 5553 22433333322222222222222 36899999999999999
Q ss_pred ec
Q 004120 356 IP 357 (773)
Q Consensus 356 Ip 357 (773)
++
T Consensus 189 v~ 190 (708)
T PRK11154 189 VP 190 (708)
T ss_pred cC
Confidence 94
No 123
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.88 E-value=0.00021 Score=85.23 Aligned_cols=137 Identities=11% Similarity=0.145 Sum_probs=88.6
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEe-cCCCCCC-CHhHHHh----------chHHHHHHHHHHHhCCCCcEEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTFI-DTPGAYA-DLKSEEL----------GQGEAIAHNLRTMFGLKVPIISIV 287 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtLI-DTpGA~~-g~~AEe~----------Gqa~aIAr~L~ams~l~VP~ISVV 287 (773)
.+++++.++....+++.++. -.+-+|.|+ ..+++++ |.+..+. .........+..+..+++|+|+.|
T Consensus 24 Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 103 (699)
T TIGR02440 24 NTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAI 103 (699)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 46889999988888876654 344444443 3443333 2221111 111223445667888999999999
Q ss_pred cCCCccchhhhccccceeeeecC--Ceeee------eCHHHHHHHhhhhccCchHHHH----HhcccHHHHHHcCCceee
Q 004120 288 IGEGGSGGALAIGCANKLLMLEN--AVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGV 355 (773)
Q Consensus 288 iGeg~GGGAlA~g~aD~Vlm~e~--A~~sV------isPEgaAsIl~rd~~~a~eaAe----~lkitA~dL~~lGiVD~I 355 (773)
.|.|+|||.-....||+++|.++ ++|+. +.|.+.....+........+.+ ...++++++++.|+||+|
T Consensus 104 nG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~v 183 (699)
T TIGR02440 104 HGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDV 183 (699)
T ss_pred CCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEe
Confidence 99999999998888999999986 45554 3344333333332222233333 236899999999999999
Q ss_pred ec
Q 004120 356 IP 357 (773)
Q Consensus 356 Ip 357 (773)
+|
T Consensus 184 v~ 185 (699)
T TIGR02440 184 VP 185 (699)
T ss_pred cC
Confidence 94
No 124
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.86 E-value=0.00026 Score=84.81 Aligned_cols=138 Identities=12% Similarity=0.046 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-CHhHHHh------c------hHHHHHHHHHHHhCCCCcEEE
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------G------QGEAIAHNLRTMFGLKVPIIS 285 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpGA~~-g~~AEe~------G------qa~aIAr~L~ams~l~VP~IS 285 (773)
..++++..+....++++.++. ..+-+|.|.-++++++ |.+..+. + ........+..+..+++|+|+
T Consensus 28 ~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIA 107 (714)
T TIGR02437 28 VNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVA 107 (714)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 356889999999999876654 4455666655443333 2222111 0 111233455677889999999
Q ss_pred EEcCCCccchhhhccccceeeeecCCeeee------eCHHHHHHHhhhhccCchHHHHH----hcccHHHHHHcCCceee
Q 004120 286 IVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGV 355 (773)
Q Consensus 286 VViGeg~GGGAlA~g~aD~Vlm~e~A~~sV------isPEgaAsIl~rd~~~a~eaAe~----lkitA~dL~~lGiVD~I 355 (773)
.|.|.|.|||.-....||+++|.++++|++ +.|.+.....+........+.+. ..++|+++++.|+||.|
T Consensus 108 ai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~v 187 (714)
T TIGR02437 108 AINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAV 187 (714)
T ss_pred EECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEe
Confidence 999999999998888899999999999886 33444433333322222333333 26899999999999999
Q ss_pred ec
Q 004120 356 IP 357 (773)
Q Consensus 356 Ip 357 (773)
+|
T Consensus 188 v~ 189 (714)
T TIGR02437 188 VT 189 (714)
T ss_pred eC
Confidence 95
No 125
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=97.85 E-value=0.00013 Score=74.60 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhh--cCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhcccccee
Q 004120 228 YRKALRMMYYADH--HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKL 305 (773)
Q Consensus 228 ~rKA~R~m~lAek--f~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~V 305 (773)
++...+.++.|.. .=..||.-+|+||..+. +...+...+..+. .+.|+|+.+-|.|.|||++..+.||.+
T Consensus 15 ~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~-------~~~~l~~~i~~~~-~~kpvia~v~g~a~s~g~~la~aaD~i 86 (207)
T TIGR00706 15 PEDFDKKIKRIKDDKSIKALLLRINSPGGTVV-------ASEEIYEKLKKLK-AKKPVVASMGGVAASGGYYIAMAADEI 86 (207)
T ss_pred HHHHHHHHHHHhhCCCccEEEEEecCCCCCHH-------HHHHHHHHHHHhc-CCCCEEEEECCccchHHHHHHhcCCEE
Confidence 4555666655543 23468888999986543 2234555565554 469999999999999999999999999
Q ss_pred eeecCCeeee
Q 004120 306 LMLENAVFYV 315 (773)
Q Consensus 306 lm~e~A~~sV 315 (773)
+|.|++.++.
T Consensus 87 ~a~p~a~vg~ 96 (207)
T TIGR00706 87 VANPGTITGS 96 (207)
T ss_pred EECCCCeEEe
Confidence 9999987553
No 126
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.85 E-value=0.00031 Score=81.74 Aligned_cols=160 Identities=12% Similarity=0.014 Sum_probs=99.3
Q ss_pred CCCCHHHHHHHHHHHHHhhh--cCCcEEEEecCCCC-CC-CHhHH--H-------hchHHHHHHHHHHHhCCCCcEEEEE
Q 004120 221 GMPTPHGYRKALRMMYYADH--HGFPIVTFIDTPGA-YA-DLKSE--E-------LGQGEAIAHNLRTMFGLKVPIISIV 287 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek--f~LPIVtLIDTpGA-~~-g~~AE--e-------~Gqa~aIAr~L~ams~l~VP~ISVV 287 (773)
.+++++.++.....+..++. ..+-+|.|.-.+.+ +. |.+.. . ........+.+..+..+++|+|+.|
T Consensus 293 Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav 372 (546)
T TIGR03222 293 NWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI 372 (546)
T ss_pred CcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 67999999999999887653 56666666554333 22 22211 0 1111122335678888999999999
Q ss_pred -cCCCccch-hhhccccceeee-------ecCCeeee------eCHHHHHHH-hhhhccCchHH--H----HHhcccHHH
Q 004120 288 -IGEGGSGG-ALAIGCANKLLM-------LENAVFYV------ASPEACAAI-LWKSAKASPKA--A----EKLKITGSE 345 (773)
Q Consensus 288 -iGeg~GGG-AlA~g~aD~Vlm-------~e~A~~sV------isPEgaAsI-l~rd~~~a~ea--A----e~lkitA~d 345 (773)
.|.|+||| .-....||++|| .+++.|++ +.|.+.... +-+..-..+.+ . -...++|++
T Consensus 373 ~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~e 452 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEE 452 (546)
T ss_pred CCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHH
Confidence 89999999 666667999999 78888775 334433332 32221011122 1 123689999
Q ss_pred HHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 004120 346 LCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 393 (773)
Q Consensus 346 L~~lGiVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l 393 (773)
+++.|+|++|++. ++ +..........|...+|..+
T Consensus 453 A~~~Glv~~vv~~---------~~----l~~~a~~~a~~la~~~p~a~ 487 (546)
T TIGR03222 453 AERLGLVTAAPDD---------ID----WEDEIRIALEERASFSPDAL 487 (546)
T ss_pred HHHcCCcccccCc---------hH----HHHHHHHHHHHHHhcCHHHH
Confidence 9999999999843 22 22334444455666666554
No 127
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=97.85 E-value=5.8e-05 Score=74.95 Aligned_cols=95 Identities=24% Similarity=0.326 Sum_probs=72.3
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhhc--CCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCc
Q 004120 215 NIQRNFGMPTPHGYRKALRMMYYADHH--GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGG 292 (773)
Q Consensus 215 ~~~~ngG~~~peg~rKA~R~m~lAekf--~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~ 292 (773)
++-+..|-+++..+......+..+... .-||+..|+|||-.+.. +.+|...+. ..+.|+++++.|.|.
T Consensus 10 r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~-------~~~i~~~l~---~~~~~v~t~~~g~aa 79 (171)
T cd07017 10 RIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTA-------GLAIYDTMQ---YIKPPVSTICLGLAA 79 (171)
T ss_pred cEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHH-------HHHHHHHHH---hcCCCEEEEEEeEeh
Confidence 444566788888888877777666643 36999999999975432 123444443 457999999999999
Q ss_pred cchhhhccccc--eeeeecCCeeeeeCHH
Q 004120 293 SGGALAIGCAN--KLLMLENAVFYVASPE 319 (773)
Q Consensus 293 GGGAlA~g~aD--~Vlm~e~A~~sVisPE 319 (773)
|+|++.++.+| .++|.|+|++.+-.|.
T Consensus 80 S~~~~i~~~g~~~~r~~~~~a~~~~h~~~ 108 (171)
T cd07017 80 SMGALLLAAGTKGKRYALPNSRIMIHQPL 108 (171)
T ss_pred hHHHHHHHcCCCCCEEEccchHHHHcCCC
Confidence 99999999999 8999999998775554
No 128
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.84 E-value=0.00012 Score=74.46 Aligned_cols=132 Identities=20% Similarity=0.239 Sum_probs=84.1
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhh--hcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCc
Q 004120 215 NIQRNFGMPTPHGYRKALRMMYYAD--HHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGG 292 (773)
Q Consensus 215 ~~~~ngG~~~peg~rKA~R~m~lAe--kf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~ 292 (773)
++-+.+|.+++........-+...+ ...-||+.+|+|||-.+.. +-+|... |...+.|+.+++.|.+.
T Consensus 27 riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~-------g~~I~d~---l~~~~~~v~t~~~G~Aa 96 (191)
T TIGR00493 27 RIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITA-------GLAIYDT---MQFIKPDVSTICIGQAA 96 (191)
T ss_pred eEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHH-------HHHHHHH---HHhcCCCEEEEEEEeec
Confidence 3335567777777666655554333 3357999999999965431 1234443 44456789999999999
Q ss_pred cchhhhccccc--eeeeecCCeeeeeCHHHHH----HHhh---------h---------hccCc-hHHHH----HhcccH
Q 004120 293 SGGALAIGCAN--KLLMLENAVFYVASPEACA----AILW---------K---------SAKAS-PKAAE----KLKITG 343 (773)
Q Consensus 293 GGGAlA~g~aD--~Vlm~e~A~~sVisPEgaA----sIl~---------r---------d~~~a-~eaAe----~lkitA 343 (773)
|.|++.+..++ .++|.|+|.+.+-.|.+.. .-+. + ..-+- .+..+ ..-+||
T Consensus 97 SaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta 176 (191)
T TIGR00493 97 SMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFMSA 176 (191)
T ss_pred cHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcH
Confidence 99988776554 6899999999987775311 0000 0 00000 11111 124688
Q ss_pred HHHHHcCCceeee
Q 004120 344 SELCKLQIADGVI 356 (773)
Q Consensus 344 ~dL~~lGiVD~II 356 (773)
++.++.|+||.||
T Consensus 177 ~EA~~~GliD~ii 189 (191)
T TIGR00493 177 EEAKEYGLIDSVL 189 (191)
T ss_pred HHHHHcCCccEEe
Confidence 9999999999998
No 129
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.84 E-value=7e-05 Score=74.43 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=87.5
Q ss_pred ccccccCCCCCHHHHHHHHHHHH-H-hhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCC
Q 004120 214 ENIQRNFGMPTPHGYRKALRMMY-Y-ADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEG 291 (773)
Q Consensus 214 e~~~~ngG~~~peg~rKA~R~m~-l-Aekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg 291 (773)
++.-+..|-++++.+.....-+. + .+.-.-||..+|+|||-.+ .+.......|...++|+++++.|.|
T Consensus 16 ~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v----------~~g~~i~~~i~~~~~~v~t~~~G~a 85 (182)
T PF00574_consen 16 ERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDV----------DAGLAIYDAIRSSKAPVTTVVLGLA 85 (182)
T ss_dssp TTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCH----------HHHHHHHHHHHHSSSEEEEEEEEEE
T ss_pred CeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCcc----------HHHHHHHHHHHhcCCCeEEEEeCcc
Confidence 34446678899998888776553 4 2346679999999999442 2333444555667899999999999
Q ss_pred ccchhhhccccce--eeeecCCeeeeeCHH----H-HH--HHhhhhccCc---------------h-HHHHH----hccc
Q 004120 292 GSGGALAIGCANK--LLMLENAVFYVASPE----A-CA--AILWKSAKAS---------------P-KAAEK----LKIT 342 (773)
Q Consensus 292 ~GGGAlA~g~aD~--Vlm~e~A~~sVisPE----g-aA--sIl~rd~~~a---------------~-eaAe~----lkit 342 (773)
.|.|++.+..|+. .+|.|+|.+.+-.|. + .. ...+....+. + +..+. .-++
T Consensus 86 aSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~ 165 (182)
T PF00574_consen 86 ASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWLS 165 (182)
T ss_dssp ETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEE
T ss_pred ccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCcccc
Confidence 9999999989988 599999998764432 1 11 1111111000 1 11111 2368
Q ss_pred HHHHHHcCCceeeec
Q 004120 343 GSELCKLQIADGVIP 357 (773)
Q Consensus 343 A~dL~~lGiVD~IIp 357 (773)
|+++++.|+||+|+.
T Consensus 166 a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 166 AEEALEYGIIDEIIE 180 (182)
T ss_dssp HHHHHHHTSSSEEES
T ss_pred HHHHHHcCCCCEecc
Confidence 899999999999993
No 130
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.77 E-value=0.00012 Score=76.31 Aligned_cols=135 Identities=17% Similarity=0.119 Sum_probs=91.2
Q ss_pred cccccccCCCCCHHHHHHHHHHHH-Hhh-hcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCC
Q 004120 213 KENIQRNFGMPTPHGYRKALRMMY-YAD-HHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGE 290 (773)
Q Consensus 213 ~e~~~~ngG~~~peg~rKA~R~m~-lAe-kf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGe 290 (773)
++++-+.+|.++...+.....-+- +-. ..+-||..+|++||-.+.. |+ +| ..+|...+.|+.+++.|.
T Consensus 53 ~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~a-----Gl--aI---yd~m~~~~~~V~tv~~G~ 122 (221)
T PRK14514 53 MDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYA-----GL--GI---YDTMQFISSDVATICTGM 122 (221)
T ss_pred hCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhh-----HH--HH---HHHHHhcCCCEEEEEEEE
Confidence 355567788899888877766443 322 2358999999999965432 22 23 345566778999999999
Q ss_pred Cccchhhhccccce--eeeecCCeeeeeCHHHHH----H--------Hhhh----------hccC-chHHHH----Hhcc
Q 004120 291 GGSGGALAIGCANK--LLMLENAVFYVASPEACA----A--------ILWK----------SAKA-SPKAAE----KLKI 341 (773)
Q Consensus 291 g~GGGAlA~g~aD~--Vlm~e~A~~sVisPEgaA----s--------Il~r----------d~~~-a~eaAe----~lki 341 (773)
+.|.|++.++.+|. ++|+|||.+.+--|-+.+ + +..- ...+ ..+..+ ..-+
T Consensus 123 AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wm 202 (221)
T PRK14514 123 AASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYWM 202 (221)
T ss_pred ehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccC
Confidence 99999999888885 889999999986665321 1 1000 0000 011111 1247
Q ss_pred cHHHHHHcCCceeeec
Q 004120 342 TGSELCKLQIADGVIP 357 (773)
Q Consensus 342 tA~dL~~lGiVD~IIp 357 (773)
||++.++.|+||.|+.
T Consensus 203 tA~EA~eyGliD~Vi~ 218 (221)
T PRK14514 203 TAQEAKEYGMIDEVLI 218 (221)
T ss_pred CHHHHHHcCCccEEee
Confidence 8999999999999994
No 131
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.77 E-value=0.00013 Score=74.63 Aligned_cols=134 Identities=21% Similarity=0.239 Sum_probs=89.4
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhhh--cCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCC
Q 004120 214 ENIQRNFGMPTPHGYRKALRMMYYADH--HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEG 291 (773)
Q Consensus 214 e~~~~ngG~~~peg~rKA~R~m~lAek--f~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg 291 (773)
+++-+.+|-+++..+.....-+.+-+. ..-||..+|++||-.+.. |+ +| ...|...+.|+.+++.|-+
T Consensus 25 ~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~-----g~--aI---yd~m~~~~~~V~t~~~G~A 94 (196)
T PRK12551 25 ERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYD-----GL--GI---FDTMQHVKPDVHTVCVGLA 94 (196)
T ss_pred CcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhh-----HH--HH---HHHHHhcCCCEEEEEEEEe
Confidence 445566777888888777766654432 357999999999965432 22 23 3445556789999999999
Q ss_pred ccchhhhccccce--eeeecCCeeeeeCHHHHH------------HHh---------h-hhcc-CchHHHH----Hhccc
Q 004120 292 GSGGALAIGCANK--LLMLENAVFYVASPEACA------------AIL---------W-KSAK-ASPKAAE----KLKIT 342 (773)
Q Consensus 292 ~GGGAlA~g~aD~--Vlm~e~A~~sVisPEgaA------------sIl---------~-rd~~-~a~eaAe----~lkit 342 (773)
.|.|++.++.+|. .+|.|||++.+--|-+.+ .+. | ...- ...+..+ ..-++
T Consensus 95 aS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~ms 174 (196)
T PRK12551 95 ASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFMS 174 (196)
T ss_pred hhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCC
Confidence 9999998888774 789999999886664211 000 0 0000 0011111 13478
Q ss_pred HHHHHHcCCceeeec
Q 004120 343 GSELCKLQIADGVIP 357 (773)
Q Consensus 343 A~dL~~lGiVD~IIp 357 (773)
|++.++.|+||.|+.
T Consensus 175 a~EA~eyGliD~I~~ 189 (196)
T PRK12551 175 PSEAVEYGLIDLVID 189 (196)
T ss_pred HHHHHHcCCCcEEec
Confidence 999999999999994
No 132
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.76 E-value=0.00058 Score=79.60 Aligned_cols=137 Identities=9% Similarity=0.032 Sum_probs=84.8
Q ss_pred CCCCHHHHHHHHHHHHHhh--hcCCcEEEEecCC-CCC-CCHhHHHhc---------hHHH----HHHHHHHHhCCCCcE
Q 004120 221 GMPTPHGYRKALRMMYYAD--HHGFPIVTFIDTP-GAY-ADLKSEELG---------QGEA----IAHNLRTMFGLKVPI 283 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAe--kf~LPIVtLIDTp-GA~-~g~~AEe~G---------qa~a----IAr~L~ams~l~VP~ 283 (773)
.+++++.+....+.++.++ .-.+.+|.|.-.+ .++ .|....+.+ .... .......+..+++|+
T Consensus 43 Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPv 122 (546)
T TIGR03222 43 NSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKF 122 (546)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 4688999988888887765 3556777776332 232 232221111 0000 011223456789999
Q ss_pred EEEEcCCCccchhhhccccceeeeecC--Ceeee-------eCHHHHHHHhhhhccCc--hHHHHH----hcccHHHHHH
Q 004120 284 ISIVIGEGGSGGALAIGCANKLLMLEN--AVFYV-------ASPEACAAILWKSAKAS--PKAAEK----LKITGSELCK 348 (773)
Q Consensus 284 ISVViGeg~GGGAlA~g~aD~Vlm~e~--A~~sV-------isPEgaAsIl~rd~~~a--~eaAe~----lkitA~dL~~ 348 (773)
|+.|.|.|.|||......||+++|.++ ++|++ +.|..+....+...... ..+.+. ..++++++++
T Consensus 123 IAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~ 202 (546)
T TIGR03222 123 LAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKE 202 (546)
T ss_pred EEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHH
Confidence 999999999999988889999999986 45553 12333332222111111 112222 3689999999
Q ss_pred cCCceeeec
Q 004120 349 LQIADGVIP 357 (773)
Q Consensus 349 lGiVD~IIp 357 (773)
.|+||+|+|
T Consensus 203 ~GLV~~vv~ 211 (546)
T TIGR03222 203 WRLVDEVVK 211 (546)
T ss_pred cCCceEEeC
Confidence 999999994
No 133
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.70 E-value=0.00042 Score=80.79 Aligned_cols=137 Identities=10% Similarity=0.049 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHHHHhh--hcCCcEEEEecCC-CCC-CCHhHHHhch---------HH----HHHHHHHHHhCCCCcE
Q 004120 221 GMPTPHGYRKALRMMYYAD--HHGFPIVTFIDTP-GAY-ADLKSEELGQ---------GE----AIAHNLRTMFGLKVPI 283 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAe--kf~LPIVtLIDTp-GA~-~g~~AEe~Gq---------a~----aIAr~L~ams~l~VP~ 283 (773)
.++++..+....++++.++ .-.+-+|.|.-.+ .++ .|.+....+. .. ........+..+++|+
T Consensus 47 Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPv 126 (550)
T PRK08184 47 NSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKF 126 (550)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 4688999999999998776 3455666665433 222 2322111100 00 0111223556789999
Q ss_pred EEEEcCCCccchhhhccccceeeeecC--Ceeee-------eCHHHHHHHhhhhccCc--hHHHHH----hcccHHHHHH
Q 004120 284 ISIVIGEGGSGGALAIGCANKLLMLEN--AVFYV-------ASPEACAAILWKSAKAS--PKAAEK----LKITGSELCK 348 (773)
Q Consensus 284 ISVViGeg~GGGAlA~g~aD~Vlm~e~--A~~sV-------isPEgaAsIl~rd~~~a--~eaAe~----lkitA~dL~~ 348 (773)
|+.|.|.|+|||+.....||++++.++ ++|+. +.|.++....+...... ..+.+. ..++++++++
T Consensus 127 IAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~ 206 (550)
T PRK08184 127 IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVD 206 (550)
T ss_pred EEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHH
Confidence 999999999999999999999999987 56543 22443332222111111 112122 2689999999
Q ss_pred cCCceeeec
Q 004120 349 LQIADGVIP 357 (773)
Q Consensus 349 lGiVD~IIp 357 (773)
.|+||+|+|
T Consensus 207 ~GLVd~vv~ 215 (550)
T PRK08184 207 WRLVDEVVK 215 (550)
T ss_pred cCCccEeeC
Confidence 999999994
No 134
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=97.67 E-value=9.9e-05 Score=75.04 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhhhc-CC-cEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhcccc
Q 004120 225 PHGYRKALRMMYYADHH-GF-PIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCA 302 (773)
Q Consensus 225 peg~rKA~R~m~lAekf-~L-PIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~a 302 (773)
+..++...+.++.+... ++ -||.-+|+||..+.. ...+...+..+...+.|+|+.|.|.|.|||++..+.|
T Consensus 16 ~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~-------~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aa 88 (208)
T cd07023 16 GIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVA-------SEEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAA 88 (208)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHH-------HHHHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhC
Confidence 66788888888766542 33 356668999875432 2346667778888899999999999999999999999
Q ss_pred ceeeeecCCeeeeeCH
Q 004120 303 NKLLMLENAVFYVASP 318 (773)
Q Consensus 303 D~Vlm~e~A~~sVisP 318 (773)
|+++|.|++.++.+|.
T Consensus 89 D~i~a~~~s~~g~iG~ 104 (208)
T cd07023 89 DKIVANPTTITGSIGV 104 (208)
T ss_pred CEEEECCCCeEEeCcE
Confidence 9999999999887764
No 135
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0003 Score=79.29 Aligned_cols=137 Identities=20% Similarity=0.291 Sum_probs=100.4
Q ss_pred CCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcC-CcEEEEecCCCCCCCHhHHHhchHHHHHHHHHH
Q 004120 197 DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRT 275 (773)
Q Consensus 197 ~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~-LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~a 275 (773)
.+.+|.|+--+ |.++|..+.-..|.++.|++.| -.||..+||||-. ....-+++.+
T Consensus 24 ~~~~v~vi~i~-------------g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGGl----------~~sm~~iv~~ 80 (436)
T COG1030 24 AEKKVYVIEID-------------GAIDPASADYLQRALQSAEEENAAAVVLELDTPGGL----------LDSMRQIVRA 80 (436)
T ss_pred cCCeEEEEEec-------------CccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCch----------HHHHHHHHHH
Confidence 45567776666 6699999999999999999988 8999999999943 3345566777
Q ss_pred HhCCCCcEEEEEcCC---CccchhhhccccceeeeecCCeeeeeCHHHHH--------------HHhh---hhccCchHH
Q 004120 276 MFGLKVPIISIVIGE---GGSGGALAIGCANKLLMLENAVFYVASPEACA--------------AILW---KSAKASPKA 335 (773)
Q Consensus 276 ms~l~VP~ISVViGe---g~GGGAlA~g~aD~Vlm~e~A~~sVisPEgaA--------------sIl~---rd~~~a~ea 335 (773)
+.+.+||++..|.=+ +.|.|+|.+..+|...|.|++.++...|=... +.+. +...+-++.
T Consensus 81 i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ 160 (436)
T COG1030 81 ILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTW 160 (436)
T ss_pred HHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCChHH
Confidence 888999988888855 78889999889999999999988864432111 1110 011122334
Q ss_pred HHH-----hcccHHHHHHcCCceeee
Q 004120 336 AEK-----LKITGSELCKLQIADGVI 356 (773)
Q Consensus 336 Ae~-----lkitA~dL~~lGiVD~II 356 (773)
|+. .-+++.+.++.|++|-|-
T Consensus 161 ae~~v~~~~~l~a~eA~~~~vid~iA 186 (436)
T COG1030 161 AERFVTENLSLTAEEALRQGVIDLIA 186 (436)
T ss_pred HHHHhhhccCCChhHHHhcCcccccc
Confidence 433 467889999999998765
No 136
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.58 E-value=0.00031 Score=72.29 Aligned_cols=135 Identities=20% Similarity=0.177 Sum_probs=89.3
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhhh--cCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCC
Q 004120 214 ENIQRNFGMPTPHGYRKALRMMYYADH--HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEG 291 (773)
Q Consensus 214 e~~~~ngG~~~peg~rKA~R~m~lAek--f~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg 291 (773)
+++-+.+|.+.++.+.-...-+-+-+. ..-||..+|++||-.+.. |+ +| ...|...+.|+.+++.|-+
T Consensus 27 ~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~-----Gl--aI---yd~m~~~~~~V~Ti~~G~A 96 (201)
T PRK14513 27 DRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYA-----GL--AI---YDTMRYIKAPVSTICVGIA 96 (201)
T ss_pred CCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhh-----HH--HH---HHHHHhcCCCEEEEEEeee
Confidence 445566778888887777555433332 357999999999955332 22 23 3445556789999999999
Q ss_pred ccchhhhccccce--eeeecCCeeeeeCHHHH----HHHhhh------------------hcc-CchHHHHH----hccc
Q 004120 292 GSGGALAIGCANK--LLMLENAVFYVASPEAC----AAILWK------------------SAK-ASPKAAEK----LKIT 342 (773)
Q Consensus 292 ~GGGAlA~g~aD~--Vlm~e~A~~sVisPEga----AsIl~r------------------d~~-~a~eaAe~----lkit 342 (773)
.|.|++.++.+|. ++|.|||++.+=-|-+. +.=+.. ... ...+..+. .-+|
T Consensus 97 aS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~ms 176 (201)
T PRK14513 97 MSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMS 176 (201)
T ss_pred hhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccC
Confidence 9999998888885 78999999988665421 111100 000 01111111 2479
Q ss_pred HHHHHHcCCceeeecC
Q 004120 343 GSELCKLQIADGVIPE 358 (773)
Q Consensus 343 A~dL~~lGiVD~IIpE 358 (773)
|++.++.|+||+|+..
T Consensus 177 a~EA~eyGliD~I~~~ 192 (201)
T PRK14513 177 PEEAKAYGLIDSVIEP 192 (201)
T ss_pred HHHHHHcCCCcEEecc
Confidence 9999999999999953
No 137
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=97.51 E-value=0.00046 Score=70.78 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEE-ecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhh
Q 004120 221 GMPTPHGYRKALRMMYYADH-HGFPIVTF-IDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALA 298 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAek-f~LPIVtL-IDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA 298 (773)
+..++..+....+.++.|.+ -++-.|.| +++||..+. ....+...+..+.. +.|+|+.|-|.|.|||.+.
T Consensus 20 ~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~-------~~~~l~~~l~~~~~-~KpViA~v~g~a~s~gy~l 91 (214)
T cd07022 20 ASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVA-------GVFELADAIRAARA-GKPIVAFVNGLAASAAYWI 91 (214)
T ss_pred CCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHH-------HHHHHHHHHHHHhc-CCCEEEEECCchhhHHHHH
Confidence 34567778888888876654 34544444 888885322 12346666666666 7999999999999999999
Q ss_pred ccccceeeeecCCeeeeeCH
Q 004120 299 IGCANKLLMLENAVFYVASP 318 (773)
Q Consensus 299 ~g~aD~Vlm~e~A~~sVisP 318 (773)
++.||+++|.|+|.++.+|.
T Consensus 92 A~~aD~i~a~~~a~~g~iG~ 111 (214)
T cd07022 92 ASAADRIVVTPTAGVGSIGV 111 (214)
T ss_pred HhcCCEEEEcCCCeEEeeeE
Confidence 99999999999999887753
No 138
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.45 E-value=0.001 Score=78.07 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhc-C-CcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhcccccee
Q 004120 228 YRKALRMMYYADHH-G-FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKL 305 (773)
Q Consensus 228 ~rKA~R~m~lAekf-~-LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~V 305 (773)
.....+.++.|... + -.||.-||+||-... . +..|.+.+..+...+.|+|+.+-|-|.|||+|..+.||++
T Consensus 331 ~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~-a------se~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I 403 (584)
T TIGR00705 331 GDTVAALLRVARSDPDIKAVVLRINSPGGSVF-A------SEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYI 403 (584)
T ss_pred HHHHHHHHHHHhhCCCceEEEEEecCCCCCHH-H------HHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEE
Confidence 34455555555432 3 478999999995322 1 2456677777777789999999999999999999999999
Q ss_pred eeecCCeee
Q 004120 306 LMLENAVFY 314 (773)
Q Consensus 306 lm~e~A~~s 314 (773)
+|.|++.++
T Consensus 404 ~a~p~t~~G 412 (584)
T TIGR00705 404 VASPNTITG 412 (584)
T ss_pred EECCCCeee
Confidence 999998763
No 139
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.41 E-value=0.00042 Score=75.56 Aligned_cols=90 Identities=21% Similarity=0.199 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccc
Q 004120 222 MPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGC 301 (773)
Q Consensus 222 ~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~ 301 (773)
..+.+...+.+|.+.... .--+||..|||||-.+. .++.|++.+..+...+ |+++.|-+-|.|||.|..+.
T Consensus 79 ~~~~~~~~~~l~~~~~~~-~vk~vvL~inSPGG~v~-------as~~i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~a 149 (317)
T COG0616 79 FIGGDDIEEILRAARADP-SVKAVVLRINSPGGSVV-------ASELIARALKRLRAKK-PVVVSVGGYAASGGYYIALA 149 (317)
T ss_pred cccHHHHHHHHHHHhcCC-CCceEEEEEECcCCchh-------HHHHHHHHHHHHhhcC-CEEEEECCeecchhhhhhcc
Confidence 456667777666555443 45689999999996544 3457999999999888 99999999999999999999
Q ss_pred cceeeeecCCeeeeeCHHH
Q 004120 302 ANKLLMLENAVFYVASPEA 320 (773)
Q Consensus 302 aD~Vlm~e~A~~sVisPEg 320 (773)
||+++|.|+++.+.+|+-.
T Consensus 150 Ad~I~a~p~si~GSIGVi~ 168 (317)
T COG0616 150 ADKIVADPSSITGSIGVIS 168 (317)
T ss_pred CCEEEecCCceeeeceeEE
Confidence 9999999999999988763
No 140
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.40 E-value=0.00075 Score=72.33 Aligned_cols=88 Identities=28% Similarity=0.282 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhcc
Q 004120 221 GMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIG 300 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g 300 (773)
+.++.+......|.++.+.+ +.||..+++|||-.+. -+..|++.+.. ...|+.++|-..|.|||++...
T Consensus 70 ~~I~i~dse~v~raI~~~~~-~~~IdLii~TpGG~v~-------AA~~I~~~l~~---~~~~v~v~VP~~A~SAGTlIAL 138 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPK-DKPIDLIIHTPGGLVD-------AAEQIARALRE---HPAKVTVIVPHYAMSAGTLIAL 138 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCC-CCceEEEEECCCCcHH-------HHHHHHHHHHh---CCCCEEEEECcccccHHHHHHH
Confidence 44778888899999999875 4599999999996543 12356666654 5689999999999999999999
Q ss_pred ccceeeeecCCeeeeeCHH
Q 004120 301 CANKLLMLENAVFYVASPE 319 (773)
Q Consensus 301 ~aD~Vlm~e~A~~sVisPE 319 (773)
.||.++|.++|.++.+.|.
T Consensus 139 aADeIvM~p~a~LGpiDPq 157 (285)
T PF01972_consen 139 AADEIVMGPGAVLGPIDPQ 157 (285)
T ss_pred hCCeEEECCCCccCCCCcc
Confidence 9999999999999998886
No 141
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=97.39 E-value=0.00055 Score=70.16 Aligned_cols=85 Identities=19% Similarity=0.153 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhh-cCCc-EEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccce
Q 004120 227 GYRKALRMMYYADH-HGFP-IVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANK 304 (773)
Q Consensus 227 g~rKA~R~m~lAek-f~LP-IVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~ 304 (773)
+++-..+.++.+.. .++- ||.-+++||..+... ..+...+..+...+.|+|+.|.|.|.|||++..+.||+
T Consensus 22 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~-------~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~ 94 (211)
T cd07019 22 GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS-------EVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPANY 94 (211)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHH-------HHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCE
Confidence 45666666665544 3544 455589999776432 23455667777789999999999999999998889999
Q ss_pred eeeecCCeeeeeCH
Q 004120 305 LLMLENAVFYVASP 318 (773)
Q Consensus 305 Vlm~e~A~~sVisP 318 (773)
++|.|+++++.+|.
T Consensus 95 i~a~~~a~~gsiGv 108 (211)
T cd07019 95 IVANPSTLTGSIGI 108 (211)
T ss_pred EEEcCCCEEEEeEE
Confidence 99999999887664
No 142
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.38 E-value=5.6e-05 Score=81.69 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=67.9
Q ss_pred CcchHHHHHHhhh-ccCCCCC---CCCCCCCCCcccccc------ccccccCCCCCCCCCcccccccchHhHHHHHHHHH
Q 004120 45 RGFAVSAKLRKVK-KHDYPWP---KDPKDVDPNVKGGVL------THLSHFKPLKEKPKPVTLDFEKPLVGLSKKIMDVR 114 (773)
Q Consensus 45 ~~~~v~~~~~~~k-~~~~p~~---~~p~~~~~~~~gGv~------~~l~~~~P~~~~~~~~~LdFEkPIvel~~ki~~l~ 114 (773)
-++++++++.++. .+++||+ ++| |+|||. +|+++++| .+++.|.+|.+
T Consensus 191 qmak~saa~~~~~~~~~vP~Isvl~gP------t~GG~aas~a~l~Diiiae~------~A~IgfAGPrV---------- 248 (296)
T CHL00174 191 QMAKISSALYDYQSNKKLFYISILTSP------TTGGVTASFGMLGDIIIAEP------NAYIAFAGKRV---------- 248 (296)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEEcCC------CchHHHHHHHHcccEEEEeC------CeEEEeeCHHH----------
Confidence 3678999988855 7899999 999 999993 99999999 89999999999
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhhhhc
Q 004120 115 KMANDTGLDFSDQIVSLENKYQQALKDLY 143 (773)
Q Consensus 115 ~la~~~giDlseEIq~LE~KleeL~kdI~ 143 (773)
+++..+.++++++|+.|..++++..|..
T Consensus 249 -Ie~t~ge~lpe~fq~ae~l~~~G~vD~i 276 (296)
T CHL00174 249 -IEQTLNKTVPEGSQAAEYLFDKGLFDLI 276 (296)
T ss_pred -HHHhcCCcCCcccccHHHHHhCcCceEE
Confidence 8888899999999999999999888764
No 143
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=97.13 E-value=0.0026 Score=66.38 Aligned_cols=164 Identities=16% Similarity=0.211 Sum_probs=109.2
Q ss_pred CCCCHHHHHHHHHHHHHhh-hcCCcEEEEec---CCCCCCCHhHH-Hhch-HH----------HHHHHHHHHhCCCCcEE
Q 004120 221 GMPTPHGYRKALRMMYYAD-HHGFPIVTFID---TPGAYADLKSE-ELGQ-GE----------AIAHNLRTMFGLKVPII 284 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAe-kf~LPIVtLID---TpGA~~g~~AE-e~Gq-a~----------aIAr~L~ams~l~VP~I 284 (773)
.+..|.......++...|. ..++-||.|.- ..-|+++-+.. -+|. .+ .+-...+.+...+.|+|
T Consensus 41 NAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR~~PKpVi 120 (282)
T COG0447 41 NAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVI 120 (282)
T ss_pred ccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHHhCCcceE
Confidence 4467777777777776664 46777888873 22244432221 1222 00 22233334556789999
Q ss_pred EEEcCCCccchhhhccccceeeeecCCeeeeeCHHHH-------HHHhhhhccCchHHHHHh----cccHHHHHHcCCce
Q 004120 285 SIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEAC-------AAILWKSAKASPKAAEKL----KITGSELCKLQIAD 353 (773)
Q Consensus 285 SVViGeg~GGGAlA~g~aD~Vlm~e~A~~sVisPEga-------AsIl~rd~~~a~eaAe~l----kitA~dL~~lGiVD 353 (773)
++|.|-+.|||-....+||..|+.++|.|+-.+|.+. ++.++|-.- ...|-|.. ..+|++.+++|+|.
T Consensus 121 A~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG-qKkArEIwfLcR~Y~A~eal~MGlVN 199 (282)
T COG0447 121 AMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG-QKKAREIWFLCRQYDAEEALDMGLVN 199 (282)
T ss_pred EEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh-hhhhHHhhhhhhhccHHHHHhcCcee
Confidence 9999999999999989999999999999999888864 355555321 12233332 46999999999999
Q ss_pred eeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004120 354 GVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKF 401 (773)
Q Consensus 354 ~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~R~~k~ 401 (773)
.|+|.. .|.....++-.++...||.. .|+-||
T Consensus 200 ~Vvp~~-------------~LE~e~v~W~~E~l~kSP~A---lR~LK~ 231 (282)
T COG0447 200 TVVPHA-------------DLEKETVQWAREMLAKSPTA---LRMLKA 231 (282)
T ss_pred eeccHH-------------HHHHHHHHHHHHHHhcChHH---HHHHHH
Confidence 999642 34444455556666667765 566666
No 144
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.08 E-value=0.0026 Score=65.58 Aligned_cols=131 Identities=23% Similarity=0.285 Sum_probs=84.1
Q ss_pred ccCCCCCHHHHHHH-HHHHHH-hhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccch
Q 004120 218 RNFGMPTPHGYRKA-LRMMYY-ADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGG 295 (773)
Q Consensus 218 ~ngG~~~peg~rKA-~R~m~l-Aekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGG 295 (773)
+.+|.++...+..+ .+++-+ ++...-||...|+|||-.+. .|. +|... |...+.|+.++++|.+.|-|
T Consensus 31 ~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~-----aG~--AIydt---m~~ik~~V~ti~~G~AaSmg 100 (200)
T COG0740 31 FLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVT-----AGL--AIYDT---MQFIKPPVSTICMGQAASMG 100 (200)
T ss_pred EEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccc-----hhH--HHHHH---HHhcCCCeEEEEecHHHhHH
Confidence 44455555544444 334433 34457899999999995544 233 35544 44467899999999999999
Q ss_pred hhhcccccee--eeecCCeeeeeCHHHHH----H--------Hhhhhc----------cCc-hHHHH----HhcccHHHH
Q 004120 296 ALAIGCANKL--LMLENAVFYVASPEACA----A--------ILWKSA----------KAS-PKAAE----KLKITGSEL 346 (773)
Q Consensus 296 AlA~g~aD~V--lm~e~A~~sVisPEgaA----s--------Il~rd~----------~~a-~eaAe----~lkitA~dL 346 (773)
++.+..++.- +++|||++.+=.|-|.+ + |+.-.. -+. .+.++ ..-++|++.
T Consensus 101 s~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA 180 (200)
T COG0740 101 SVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEA 180 (200)
T ss_pred HHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHH
Confidence 9887777765 99999999986666422 1 110000 000 01111 134789999
Q ss_pred HHcCCceeeecC
Q 004120 347 CKLQIADGVIPE 358 (773)
Q Consensus 347 ~~lGiVD~IIpE 358 (773)
++.|+||.|+..
T Consensus 181 ~~yGLiD~V~~~ 192 (200)
T COG0740 181 KEYGLIDKVIES 192 (200)
T ss_pred HHcCCcceeccc
Confidence 999999999954
No 145
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.99 E-value=0.0029 Score=66.23 Aligned_cols=125 Identities=21% Similarity=0.244 Sum_probs=76.7
Q ss_pred HHHHHHhh-hcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccce--eeee
Q 004120 232 LRMMYYAD-HHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANK--LLML 308 (773)
Q Consensus 232 ~R~m~lAe-kf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~--Vlm~ 308 (773)
..++.+.. ...-||-.+|++||-..-.+ +..|..-........|...+-|+.++++|-++|.|++.++.++. .+|+
T Consensus 59 aqLl~L~~~~~~k~I~lyINSpGGsv~~G-~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~al 137 (222)
T PRK12552 59 AQLLYLEFDDPEKPIYFYINSTGTSWYTG-DAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASL 137 (222)
T ss_pred HHHHHHhccCCCCCEEEEEeCCCCCcccc-ccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecC
Confidence 34444433 34689999999999543111 11111111222334445566799999999999999999888885 7899
Q ss_pred cCCeeeeeCHHHH----HHHhhhhcc------------------C-chHHHH----HhcccHHHHHHcCCceeeec
Q 004120 309 ENAVFYVASPEAC----AAILWKSAK------------------A-SPKAAE----KLKITGSELCKLQIADGVIP 357 (773)
Q Consensus 309 e~A~~sVisPEga----AsIl~rd~~------------------~-a~eaAe----~lkitA~dL~~lGiVD~IIp 357 (773)
|||++.+=-|.+. +.=+..... + ..+..+ ..-+||++.++.|+||+|+.
T Consensus 138 pns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~ 213 (222)
T PRK12552 138 PHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLE 213 (222)
T ss_pred CCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEec
Confidence 9999988655422 111111000 0 011111 12479999999999999994
No 146
>PRK11778 putative inner membrane peptidase; Provisional
Probab=96.90 E-value=0.0033 Score=69.29 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=56.5
Q ss_pred CcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeeeeCH
Q 004120 243 FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASP 318 (773)
Q Consensus 243 LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sVisP 318 (773)
--||.-|||||..+... +.++..+..+...+.|+++.+-+-|.|||+|..+.||.++|.|.+.++.+|.
T Consensus 124 ~aVvLridSpGG~v~~s-------~~a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGV 192 (330)
T PRK11778 124 DEVLLRLESPGGVVHGY-------GLAASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGV 192 (330)
T ss_pred CeEEEEEeCCCCchhHH-------HHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeee
Confidence 34999999999776421 2344556677778899999999999999999999999999999999888775
No 147
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=96.76 E-value=0.0054 Score=76.66 Aligned_cols=146 Identities=18% Similarity=0.219 Sum_probs=112.5
Q ss_pred hheeccCCCCCCCCCceEEEEEEE------CCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEE
Q 004120 173 KFVELHGDRAGYDDPAIVTGIGSM------DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIV 246 (773)
Q Consensus 173 dF~EL~gd~~~~dD~aVVtGlArI------~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIV 246 (773)
..+|.... .+..+-++|.-.-++ .|+.+.|||||-+ +.-|+.||..-.-..++-++|.+.++|-|
T Consensus 1515 ~L~~vnR~-pG~N~~GMVAw~~~~~TpEyP~Gr~~iVIgNDiT--------fqiGSFGp~ED~lF~~aselAR~~~iPrI 1585 (2196)
T KOG0368|consen 1515 ELTEVNRE-PGLNSCGMVAWKLTVKTPEYPEGRDLIVIGNDVT--------FQIGSFGPREDLLFLAASELAREKGIPRI 1585 (2196)
T ss_pred cEEEeccC-CCCCcceeEEEEEEecCCCCCCCceEEEEeccce--------EeccCCCChHHHHHHHHHHHHHhcCCCeE
Confidence 34454422 245668888887776 7999999999987 88999999999999999999999999999
Q ss_pred EEecCCCCCCCHhHHHhch-------------------------------------------------------------
Q 004120 247 TFIDTPGAYADLKSEELGQ------------------------------------------------------------- 265 (773)
Q Consensus 247 tLIDTpGA~~g~~AEe~Gq------------------------------------------------------------- 265 (773)
++--..||++|...|-...
T Consensus 1586 ylaaNSGARIGlAeei~~lfkVaw~d~~~P~kgF~YlYlt~ed~~ri~~~~v~~e~~~~~GE~R~~I~~IiGkeeglGVE 1665 (2196)
T KOG0368|consen 1586 YLAANSGARIGLAEEIKPLFKVAWVDEDDPEKGFQYLYLTPEDYERIGSSVVHCEVVEESGEERLKIKAIIGKEEGIGVE 1665 (2196)
T ss_pred EEeccCccccccHHHHHHHheeeccCCCCcCCCceEEEECHHHHHHhhcccceeEEEeecCcceEEEEEEecccccccce
Confidence 9999999999976552111
Q ss_pred ----HHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeeeeCHHHHHHHhhhh
Q 004120 266 ----GEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKS 328 (773)
Q Consensus 266 ----a~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sVisPEgaAsIl~rd 328 (773)
.+.||-.-.. +-..+|+||.|+|.+.|-|||..-++-+++-.+++.+-..|..+.-.+|.|.
T Consensus 1666 nL~GSGlIAGetSr-AY~ei~T~t~VT~RsVGIGAYlvRLgqR~IQve~~~iILTGa~ALNklLGre 1731 (2196)
T KOG0368|consen 1666 NLRGSGLIAGETSR-AYNEIFTITLVTGRSVGIGAYLARLGQRIIQVEDQHIILTGASALNKLLGRE 1731 (2196)
T ss_pred eccccccccchhhh-hhhccceEEEEecceeeHHHHHHHHHHHHHHhcCCceEEeCHHHHHHHhccc
Confidence 0122221111 1135999999999999999999888889999998888888877766666553
No 148
>PRK10949 protease 4; Provisional
Probab=96.69 E-value=0.021 Score=67.85 Aligned_cols=87 Identities=18% Similarity=0.128 Sum_probs=62.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcC-CcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhh
Q 004120 220 FGMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALA 298 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAekf~-LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA 298 (773)
.|+++.+...+.+| +.++.-+ --||.-||+||..+. .++.|.+.+..+...+.|+|+.+-+-|.|||+|.
T Consensus 344 ~g~~~~~~~~~~l~--~a~~D~~vkaVvLrInSpGGs~~-------ase~i~~~i~~~r~~gKPVvas~~~~aASggY~i 414 (618)
T PRK10949 344 PGNVGGDTTAAQIR--DARLDPKVKAIVLRVNSPGGSVT-------ASEVIRAELAAARAAGKPVVVSMGGMAASGGYWI 414 (618)
T ss_pred CCCcCHHHHHHHHH--HHHhCCCCcEEEEEecCCCCcHH-------HHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHH
Confidence 35666655555544 2222222 358888999995432 2346777777777778999999888999999999
Q ss_pred ccccceeeeecCCeeee
Q 004120 299 IGCANKLLMLENAVFYV 315 (773)
Q Consensus 299 ~g~aD~Vlm~e~A~~sV 315 (773)
.+.||.++|.|.+..+.
T Consensus 415 A~aad~I~a~p~t~tGS 431 (618)
T PRK10949 415 STPANYIVASPSTLTGS 431 (618)
T ss_pred HHhcCEEEECCCCceee
Confidence 99999999999766443
No 149
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0069 Score=64.39 Aligned_cols=138 Identities=22% Similarity=0.242 Sum_probs=94.5
Q ss_pred cccccccCCCCCHHHHHHH-HHHHHH-hhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCC
Q 004120 213 KENIQRNFGMPTPHGYRKA-LRMMYY-ADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGE 290 (773)
Q Consensus 213 ~e~~~~ngG~~~peg~rKA-~R~m~l-Aekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGe 290 (773)
++++-+.|+.+.++-..-. +.++-| ++.-..||..+|++||-.... |+ +|.. .|.-.+-|+-++.+|.
T Consensus 91 reRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vta-----gl--AIYD---tMq~ik~~V~Tic~G~ 160 (275)
T KOG0840|consen 91 RERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTA-----GL--AIYD---TMQYIKPDVSTICVGL 160 (275)
T ss_pred HhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccch-----hh--hHHH---HHHhhCCCceeeehhh
Confidence 3566677888888776654 444443 566889999999999977631 22 3443 4555678999999999
Q ss_pred Cccchhhhccc--cceeeeecCCeeeeeCHHHHHH----HhhhhccCc-------------------hHHHH----Hhcc
Q 004120 291 GGSGGALAIGC--ANKLLMLENAVFYVASPEACAA----ILWKSAKAS-------------------PKAAE----KLKI 341 (773)
Q Consensus 291 g~GGGAlA~g~--aD~Vlm~e~A~~sVisPEgaAs----Il~rd~~~a-------------------~eaAe----~lki 341 (773)
++|-|++.++. --..+++||+++.+--|-|.+. =++..+... ++..+ ...+
T Consensus 161 Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fm 240 (275)
T KOG0840|consen 161 AASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFM 240 (275)
T ss_pred HHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccC
Confidence 99988887754 4478999999999876665432 122221111 01111 1257
Q ss_pred cHHHHHHcCCceeeecCCC
Q 004120 342 TGSELCKLQIADGVIPEPL 360 (773)
Q Consensus 342 tA~dL~~lGiVD~IIpE~l 360 (773)
+|.+..+.|+||.|+..|.
T Consensus 241 sa~EA~eyGliD~v~~~p~ 259 (275)
T KOG0840|consen 241 SAEEAKEYGLIDKVIDHPP 259 (275)
T ss_pred CHHHHHHhcchhhhhcCCc
Confidence 8999999999999997663
No 150
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=96.11 E-value=0.019 Score=59.67 Aligned_cols=87 Identities=23% Similarity=0.322 Sum_probs=64.6
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeeee---------CHHH-HHHHhhhhccCchHHHH
Q 004120 268 AIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVA---------SPEA-CAAILWKSAKASPKAAE 337 (773)
Q Consensus 268 aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sVi---------sPEg-aAsIl~rd~~~a~eaAe 337 (773)
.....+..+.+.+||+|+-|.|-+...|.-..+.||.+++..++.|++- .|-. .+.++-| +-++.
T Consensus 113 tc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvAlaRavpR-----kva~~ 187 (287)
T KOG1682|consen 113 TCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVALARAVPR-----KVAAY 187 (287)
T ss_pred HHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchhHhhhcch-----hHHHH
Confidence 4455566778899999999999998888888899999999888777652 2222 2233322 22333
Q ss_pred ----HhcccHHHHHHcCCceeeecCC
Q 004120 338 ----KLKITGSELCKLQIADGVIPEP 359 (773)
Q Consensus 338 ----~lkitA~dL~~lGiVD~IIpE~ 359 (773)
.+++++++.+..|++..|+|+.
T Consensus 188 ML~Tg~Pi~~eeAl~sGlvskvVp~~ 213 (287)
T KOG1682|consen 188 MLMTGLPITGEEALISGLVSKVVPAE 213 (287)
T ss_pred HHHhCCCCchHHHHHhhhhhhcCCHH
Confidence 3589999999999999999764
No 151
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.03 E-value=0.0024 Score=69.01 Aligned_cols=75 Identities=24% Similarity=0.379 Sum_probs=64.5
Q ss_pred CcchHHHHHHhhhccCCCCC---CCCCCCCCCccccc------cccccccCCCCCCCCCcccccccchHhHHHHHHHHHh
Q 004120 45 RGFAVSAKLRKVKKHDYPWP---KDPKDVDPNVKGGV------LTHLSHFKPLKEKPKPVTLDFEKPLVGLSKKIMDVRK 115 (773)
Q Consensus 45 ~~~~v~~~~~~~k~~~~p~~---~~p~~~~~~~~gGv------~~~l~~~~P~~~~~~~~~LdFEkPIvel~~ki~~l~~ 115 (773)
.++++++++.++..++.||+ ++| ++||+ ++|+++++| .+++.|.+|.+
T Consensus 178 ~~ak~~~~~~~~~~~~vP~IsVv~gp------t~GG~aas~a~~~D~iia~p------~A~ig~aGprV----------- 234 (285)
T TIGR00515 178 QMAKTSAALAKMSERGLPYISVLTDP------TTGGVSASFAMLGDLNIAEP------KALIGFAGPRV----------- 234 (285)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEEeCC------cchHHHHHHHhCCCEEEEEC------CeEEEcCCHHH-----------
Confidence 36789999999999999999 889 99997 499999999 89999999998
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhhhh
Q 004120 116 MANDTGLDFSDQIVSLENKYQQALKDL 142 (773)
Q Consensus 116 la~~~giDlseEIq~LE~KleeL~kdI 142 (773)
+.+..+.+++++++..+..++++..|.
T Consensus 235 ie~ti~e~lpe~~q~ae~~~~~G~vD~ 261 (285)
T TIGR00515 235 IEQTVREKLPEGFQTSEFLLEHGAIDM 261 (285)
T ss_pred HHHHhcCccchhcCCHHHHHhCCCCcE
Confidence 555677788888999998888776553
No 152
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=95.81 E-value=0.0023 Score=69.43 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=61.6
Q ss_pred CcchHHHHHHhhhccCCCCC---CCCCCCCCCcccccc------ccccccCCCCCCCCCcccccccchHhHHHHHHHHHh
Q 004120 45 RGFAVSAKLRKVKKHDYPWP---KDPKDVDPNVKGGVL------THLSHFKPLKEKPKPVTLDFEKPLVGLSKKIMDVRK 115 (773)
Q Consensus 45 ~~~~v~~~~~~~k~~~~p~~---~~p~~~~~~~~gGv~------~~l~~~~P~~~~~~~~~LdFEkPIvel~~ki~~l~~ 115 (773)
.++++++++.++..++.||+ ++| ++||+. +|+++++| .+.+.|.+|.+
T Consensus 179 ~~ak~~~a~~~~~~a~vP~IsVv~gp------t~GG~aas~a~~~D~iia~p------~A~ig~aGprv----------- 235 (292)
T PRK05654 179 QMAKTSAALKRLSEAGLPYISVLTDP------TTGGVSASFAMLGDIIIAEP------KALIGFAGPRV----------- 235 (292)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEEeCC------CchHHHHHHHHcCCEEEEec------CcEEEecCHHH-----------
Confidence 36788999999999999999 889 999983 99999999 88999999987
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhhhh
Q 004120 116 MANDTGLDFSDQIVSLENKYQQALKDL 142 (773)
Q Consensus 116 la~~~giDlseEIq~LE~KleeL~kdI 142 (773)
+.+..+.+++++++..+...+++..|.
T Consensus 236 ie~~~~e~lpe~~~~ae~~~~~G~vD~ 262 (292)
T PRK05654 236 IEQTVREKLPEGFQRAEFLLEHGAIDM 262 (292)
T ss_pred HHhhhhhhhhhhhcCHHHHHhCCCCcE
Confidence 555555667777888888777766543
No 153
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=94.67 E-value=0.028 Score=59.34 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeee----eCHHHHHHHhhhhccC------chHH
Q 004120 266 GEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV----ASPEACAAILWKSAKA------SPKA 335 (773)
Q Consensus 266 a~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV----isPEgaAsIl~rd~~~------a~ea 335 (773)
...+-.++..+-+++.|+|+.|.|.|.|||.=.+..||+.++.++|.|+| +|-.+=...+-|-+.- +.+.
T Consensus 112 Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~el 191 (292)
T KOG1681|consen 112 IKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLAREL 191 (292)
T ss_pred HHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHH
Confidence 44555667777889999999999999999998888999999999999998 3322222223221111 1122
Q ss_pred -HHHhcccHHHHHHcCCceeeec
Q 004120 336 -AEKLKITGSELCKLQIADGVIP 357 (773)
Q Consensus 336 -Ae~lkitA~dL~~lGiVD~IIp 357 (773)
-.+.++.|.+.++.|+|.+|.|
T Consensus 192 afTar~f~a~EAl~~GLvSrvf~ 214 (292)
T KOG1681|consen 192 AFTARKFSADEALDSGLVSRVFP 214 (292)
T ss_pred HhhhhhcchhhhhhcCcchhhcC
Confidence 2345788899999999999995
No 154
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.38 E-value=6.5 Score=46.58 Aligned_cols=209 Identities=21% Similarity=0.346 Sum_probs=128.6
Q ss_pred HHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhh--ccCCCCChhhHHHHHHHh
Q 004120 466 MIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQ--GLASAPNYASLKYKLDML 543 (773)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~n~~~Lk~ki~~~ 543 (773)
+...|..=++.|-.+-..--.|.+++..+|..+..-+..=-+--|.|..+++.+-..|++ .|...++|..=+.-+..+
T Consensus 120 i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l 199 (560)
T PF06160_consen 120 ILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKL 199 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333333333444445555567899999999999888777777778999999999999986 689999999888888888
Q ss_pred hhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 004120 544 KEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDG 623 (773)
Q Consensus 544 ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~ 623 (773)
++..... .+.=+.|-.|=.++...|+.-+. .|++-+..+.+ .....-|..+-+.|..+.+.++..+..
T Consensus 200 ~~~~~~l--~~~~e~IP~l~~~l~~~~P~ql~--eL~~gy~~m~~-------~gy~l~~~~i~~~i~~i~~~l~~~~~~- 267 (560)
T PF06160_consen 200 KEETDEL--EEIMEDIPKLYKELQKEFPDQLE--ELKEGYREMEE-------EGYYLEHLDIEEEIEQIEEQLEEALAL- 267 (560)
T ss_pred HHHHHHH--HHHHHHhHHHHHHHHHHhHHHHH--HHHHHHHHHHH-------CCCCCCCCCHHHHHHHHHHHHHHHHHH-
Confidence 8654321 22223344567777777774432 33444444443 456677778888888888876643332
Q ss_pred HhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHH
Q 004120 624 LESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQAL 703 (773)
Q Consensus 624 ~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l 703 (773)
++.| +++ .+++.+++|..+|+.+ ++.|.-|+. .+..|++.
T Consensus 268 L~~l--~l~--------------------~~~~~~~~i~~~Id~l---------Yd~le~E~~---------Ak~~V~~~ 307 (560)
T PF06160_consen 268 LKNL--ELD--------------------EVEEENEEIEERIDQL---------YDILEKEVE---------AKKYVEKN 307 (560)
T ss_pred HHcC--CHH--------------------HHHHHHHHHHHHHHHH---------HHHHHHHHH---------HHHHHHHh
Confidence 2222 333 4555666666666643 555555554 24445555
Q ss_pred HHHHHHHHHHHhCChh-hHHHHHH
Q 004120 704 EQQIKQRLSEAVNSSE-LKEKHEE 726 (773)
Q Consensus 704 ~~~I~~~ie~a~~ss~-lk~k~E~ 726 (773)
...|.+.|..+-+... |...++.
T Consensus 308 ~~~l~~~l~~~~~~~~~l~~e~~~ 331 (560)
T PF06160_consen 308 LKELYEYLEHAKEQNKELKEELER 331 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554443333 3333333
No 155
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=94.21 E-value=0.069 Score=52.26 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=29.7
Q ss_pred CCCCcEEEEEcCCCccchhhhccccceeeeecCCeeee
Q 004120 278 GLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV 315 (773)
Q Consensus 278 ~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sV 315 (773)
..+.|+++.+-+-+.|||.|..+.||.|+|.|.+.++.
T Consensus 4 ~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgs 41 (154)
T PF01343_consen 4 ASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGS 41 (154)
T ss_dssp HTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE-
T ss_pred ccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEE
Confidence 35789999999999999999999999999999888764
No 156
>PRK01156 chromosome segregation protein; Provisional
Probab=94.05 E-value=7.6 Score=48.06 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHH
Q 004120 436 KLEDEVEKLKQQILK 450 (773)
Q Consensus 436 ~~~~~~~~~~~~~~~ 450 (773)
+++.+++.++++|.+
T Consensus 194 ~~e~eL~~~~~~i~e 208 (895)
T PRK01156 194 SSNLELENIKKQIAD 208 (895)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555544
No 157
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=93.96 E-value=0.38 Score=48.56 Aligned_cols=74 Identities=23% Similarity=0.378 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 004120 604 DLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKL 683 (773)
Q Consensus 604 ~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~ 683 (773)
-|+..|++++.+++.++...-.++.+++..-+++.++... ....|+..++..|..+|. +++..||.+|.
T Consensus 84 ~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~-----~~~~ki~e~~~ki~~ei~------~lr~~iE~~K~ 152 (177)
T PF07798_consen 84 KLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQA-----KQELKIQELNNKIDTEIA------NLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 3677777777777777777777777777777777776654 233455555555555543 47888888888
Q ss_pred HHHhh
Q 004120 684 EIAKA 688 (773)
Q Consensus 684 Evaka 688 (773)
++-+.
T Consensus 153 ~~lr~ 157 (177)
T PF07798_consen 153 DTLRW 157 (177)
T ss_pred HHHHH
Confidence 77653
No 158
>PRK03918 chromosome segregation protein; Provisional
Probab=93.93 E-value=4.3 Score=49.73 Aligned_cols=10 Identities=30% Similarity=0.703 Sum_probs=5.2
Q ss_pred EECCeEEEEE
Q 004120 195 SMDGRTYMFM 204 (773)
Q Consensus 195 rI~GrpV~VI 204 (773)
..+|+++.|.
T Consensus 78 ~~~~~~~~i~ 87 (880)
T PRK03918 78 EKNGRKYRIV 87 (880)
T ss_pred EECCeEEEEE
Confidence 4556655443
No 159
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.22 E-value=16 Score=43.29 Aligned_cols=94 Identities=15% Similarity=0.302 Sum_probs=59.6
Q ss_pred ChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhHHHHHHHHHc---------CcHHHHHHHHHHhccCCC
Q 004120 433 SKEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAM---------GMQEKFATLRAEFSKGNS 503 (773)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 503 (773)
.-..|+..+..+..+.-.-.+-...---..-.+.+.+|+.++++ +...+..+ -+.+.|..|+....+...
T Consensus 166 a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~-l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~ 244 (569)
T PRK04778 166 ALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAA-LEQIMEEIPELLKELQTELPDQLQELKAGYRELVE 244 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34567888888877777766655444445556667777666653 22222222 267778888888887754
Q ss_pred CC-CCCChHHHHHHHHHHHHHhhcc
Q 004120 504 RD-QLMDPILMDKITELKNEFNQGL 527 (773)
Q Consensus 504 ~~-~~~~~~~~~~~~~~~~~~~~~~ 527 (773)
++ .+-|=.+-..|+.|++...+.+
T Consensus 245 ~gy~~~~~~i~~~i~~l~~~i~~~~ 269 (569)
T PRK04778 245 EGYHLDHLDIEKEIQDLKEQIDENL 269 (569)
T ss_pred cCCCCCCCChHHHHHHHHHHHHHHH
Confidence 43 4444457888888888877755
No 160
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.06 E-value=9.7 Score=45.16 Aligned_cols=14 Identities=36% Similarity=0.335 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHHHH
Q 004120 718 SELKEKHEELMAEI 731 (773)
Q Consensus 718 s~lk~k~E~Lk~e~ 731 (773)
-+|++-|+.|...+
T Consensus 441 QeL~~yi~~Le~r~ 454 (546)
T PF07888_consen 441 QELLEYIERLEQRL 454 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 34666677776665
No 161
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.47 E-value=36 Score=43.67 Aligned_cols=65 Identities=28% Similarity=0.313 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHhhhcCC--CCCchHH---HHHHHHHHHHHhHHHHHHHH---HcCcHHHHHHHHHHhc
Q 004120 435 EKLEDEVEKLKQQILKAKESST--KPPDAAL---NVMIQKLKKEVDHEFSEAAK---AMGMQEKFATLRAEFS 499 (773)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 499 (773)
..+..+++-|++||......+- ++....+ .+-|+.+++|++.=--+|++ --+|+.++..+..|.-
T Consensus 830 k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~ 902 (1293)
T KOG0996|consen 830 KRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKV 902 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhh
Confidence 3444578888888877655422 2323333 34466666666654333433 2234444444444433
No 162
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=91.31 E-value=2.5 Score=50.33 Aligned_cols=83 Identities=10% Similarity=-0.007 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhh-cCCcE-EEEecCC-CCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccc
Q 004120 225 PHGYRKALRMMYYADH-HGFPI-VTFIDTP-GAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGC 301 (773)
Q Consensus 225 peg~rKA~R~m~lAek-f~LPI-VtLIDTp-GA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~ 301 (773)
+.+++..++.++.|.+ -++-= |.=+|++ |..+ +..+.|++.+..+...+.|+|+..-+ ..+||+|..+.
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~-------~~~~ei~~ai~~fk~sgKpVvA~~~~-~~s~~YylAs~ 146 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDS-------PHLVEIGSALSEFKDSGKPVYAYGTN-YSQGQYYLASF 146 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCH-------HHHHHHHHHHHHHHhcCCeEEEEEcc-ccchhhhhhhh
Confidence 5578888888887654 44554 4447753 4221 23456888888888788999985433 34567777778
Q ss_pred cceeeeecCCeeee
Q 004120 302 ANKLLMLENAVFYV 315 (773)
Q Consensus 302 aD~Vlm~e~A~~sV 315 (773)
||.++|.|.+.+++
T Consensus 147 AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 147 ADEIILNPMGSVDL 160 (584)
T ss_pred CCEEEECCCceEEe
Confidence 99999999888754
No 163
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.20 E-value=39 Score=40.23 Aligned_cols=134 Identities=16% Similarity=0.234 Sum_probs=87.8
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhh--ccCCCCChhhHHHHHHHhhhhccccccc
Q 004120 476 HEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQ--GLASAPNYASLKYKLDMLKEFSNAKSLL 553 (773)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~n~~~Lk~ki~~~ke~s~~~~~~ 553 (773)
.|-.+-..--.|.+++..+|..+.--+..=-+--|.|-.+++.+..+|.+ .|..+++|..=+.-+..+++..... .
T Consensus 134 ~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l--~ 211 (569)
T PRK04778 134 SEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAAL--E 211 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH--H
Confidence 33333444456789999999999887777777778899999999999986 6999999999988888888665422 1
Q ss_pred hhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 004120 554 DSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESEL 620 (773)
Q Consensus 554 ~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l 620 (773)
..=+.|=+|=.++...|+.-++ +|++-+..|+. .....=|..+-.+|..+++++...+
T Consensus 212 ~~~~~iP~l~~~~~~~~P~ql~--el~~gy~~m~~-------~gy~~~~~~i~~~i~~l~~~i~~~~ 269 (569)
T PRK04778 212 QIMEEIPELLKELQTELPDQLQ--ELKAGYRELVE-------EGYHLDHLDIEKEIQDLKEQIDENL 269 (569)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHH-------cCCCCCCCChHHHHHHHHHHHHHHH
Confidence 1222333455666666654432 34444444443 2333334456666666666655544
No 164
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=91.17 E-value=11 Score=47.08 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHH
Q 004120 436 KLEDEVEKLKQQILK 450 (773)
Q Consensus 436 ~~~~~~~~~~~~~~~ 450 (773)
++..+++.|..++..
T Consensus 678 ~l~~~l~~l~~~l~~ 692 (1164)
T TIGR02169 678 RLRERLEGLKRELSS 692 (1164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555433
No 165
>PRK01156 chromosome segregation protein; Provisional
Probab=90.97 E-value=11 Score=46.73 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=4.0
Q ss_pred hHHHHHHHH
Q 004120 720 LKEKHEELM 728 (773)
Q Consensus 720 lk~k~E~Lk 728 (773)
++..+++|+
T Consensus 435 l~~~~~el~ 443 (895)
T PRK01156 435 LRENLDELS 443 (895)
T ss_pred HHHHHHHHH
Confidence 444444444
No 166
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.93 E-value=17 Score=46.83 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=17.3
Q ss_pred ChhhhHHHHHHHHHHHHHhhh
Q 004120 433 SKEKLEDEVEKLKQQILKAKE 453 (773)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~ 453 (773)
--.+|+.++++|+.|.-.|.+
T Consensus 194 ~~~el~~~l~~L~~q~~~a~~ 214 (1163)
T COG1196 194 LLEELEKQLEKLERQAEKAER 214 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999888875
No 167
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.36 E-value=11 Score=49.09 Aligned_cols=122 Identities=7% Similarity=0.061 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhccCCCC-ChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHh
Q 004120 513 MDKITELKNEFNQGLASAP-NYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQ 591 (773)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~-n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ 591 (773)
.+.+..+.+.|...+.... ....+..++..++... ..+.+....|..++.+--.++-.-.....++..+-.|++
T Consensus 300 ~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el-----~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~ 374 (1311)
T TIGR00606 300 DEQLNDLYHNHQRTVREKERELVDCQRELEKLNKER-----RLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLA 374 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777776543322 3445555555555333 333444444555555544444444555566666767676
Q ss_pred hcCCCC---CCCCChH----HHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHH
Q 004120 592 DSGASS---FSDLEDD----LKEKLVETKKEIESELIDGLESLGLDVEVVKSKAK 639 (773)
Q Consensus 592 ka~~s~---~~~l~~~----Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k 639 (773)
.--+-+ ..++++. +..+|.+.-...+..+.....++..++..+..++-
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ 429 (1311)
T TIGR00606 375 TRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQAD 429 (1311)
T ss_pred HhcCcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 642211 2224433 56666666666666666665555555555543333
No 168
>PRK03918 chromosome segregation protein; Provisional
Probab=90.30 E-value=54 Score=40.39 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCChHHHHHH
Q 004120 579 IKEKMEAIKAKLQDSGASSFSDLEDDLKEKL 609 (773)
Q Consensus 579 lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki 609 (773)
|++.++.|+.....- -.-.++|+++-+..|
T Consensus 424 L~~~l~~L~~~~~~C-p~c~~~L~~~~~~el 453 (880)
T PRK03918 424 LKKAIEELKKAKGKC-PVCGRELTEEHRKEL 453 (880)
T ss_pred HHHHHHHHHhcCCCC-CCCCCcCCchhHHHH
Confidence 666666666422222 124778888766655
No 169
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.06 E-value=21 Score=38.44 Aligned_cols=158 Identities=18% Similarity=0.278 Sum_probs=64.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhcCCCCC---chHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCCh
Q 004120 434 KEKLEDEVEKLKQQILKAKESSTKPP---DAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDP 510 (773)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (773)
...||.+-..|..+|-........++ ......-|..|++.||.-..+-... +-.+..++.+
T Consensus 20 Vr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l---~~e~~~l~~e------------- 83 (312)
T PF00038_consen 20 VRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARL---ELEIDNLKEE------------- 83 (312)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHH---HHHHHHHHHH-------------
T ss_pred HHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHH---hhhhhhHHHH-------------
Confidence 45678888888888887776542222 2334555666666666555444322 1122222222
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhcc--ccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHH
Q 004120 511 ILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSN--AKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKA 588 (773)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~--~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~ 588 (773)
++.++..+..- ......|...|..++.... .....++...+..|+.||+..-. .-.+.+..|+.
T Consensus 84 -----~~~~r~k~e~e---~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~------~heeEi~~L~~ 149 (312)
T PF00038_consen 84 -----LEDLRRKYEEE---LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ------NHEEEIEELRE 149 (312)
T ss_dssp -----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTST
T ss_pred -----HHHHHHHHHHH---HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh------hhhhhhhhhhh
Confidence 22111111111 1111222222222221110 12234466677778877764322 23344555555
Q ss_pred HHh-hcCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 004120 589 KLQ-DSGASSFSDLEDDLKEKLVETKKEIESELI 621 (773)
Q Consensus 589 E~~-ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~ 621 (773)
.+. .....-.+.-.++|-..+..++.+++..+.
T Consensus 150 ~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~ 183 (312)
T PF00038_consen 150 QIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQ 183 (312)
T ss_dssp T----------------HHHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccchhhhhhHHHHHHHHHh
Confidence 553 111111334456677777777777775443
No 170
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.80 E-value=5.3 Score=45.05 Aligned_cols=112 Identities=26% Similarity=0.396 Sum_probs=77.1
Q ss_pred HHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHH---HhhcCcchHHhhhH
Q 004120 561 KLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDG---LESLGLDVEVVKSK 637 (773)
Q Consensus 561 ~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~---~~sl~~~~~~l~sk 637 (773)
+++..|..-+ ++.+-.|+.|..+++++ .|||..--+=+|..|..- |.++.-++.-++.+
T Consensus 227 ~~~~~I~~~~------~~~~~~L~kl~~~i~~~------------lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~ 288 (359)
T PF10498_consen 227 QHKKSIESAL------PETKSQLDKLQQDISKT------------LEKIESREKYINNQLEPLIQEYRSAQDELSEVQEK 288 (359)
T ss_pred HHHHHHHHhh------hHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3555565555 46788888899999887 788887777777766655 66666666655544
Q ss_pred HHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCC-----CCChhhHHHHHHHHHHHHH
Q 004120 638 AKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGK-----KPDVKSKCKIQALEQQIKQ 709 (773)
Q Consensus 638 ~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~-----~p~~~~k~KIe~l~~~I~~ 709 (773)
.+.+++ -+.++.+++ .+|.+.+|..|.|+..-|. +|-...|+=|..|+++|++
T Consensus 289 y~~~s~---------~V~~~t~~L----------~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 289 YKQASE---------GVSERTREL----------AEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHhh---------HHHHHHHHH----------HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 444443 233333333 3477888889999988777 6677778888888888876
No 171
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=89.72 E-value=14 Score=37.44 Aligned_cols=73 Identities=23% Similarity=0.375 Sum_probs=49.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHH
Q 004120 649 NFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELM 728 (773)
Q Consensus 649 ~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~Lk 728 (773)
.++..++.|+++++..|..+ +.++|--+..-|.++.--- .....||..++..|..+|. +|+..+|.+|
T Consensus 84 ~L~~eie~l~~~L~~ei~~l--~a~~klD~n~eK~~~r~e~----~~~~~ki~e~~~ki~~ei~------~lr~~iE~~K 151 (177)
T PF07798_consen 84 KLQREIEKLRQELREEINKL--RAEVKLDLNLEKGRIREEQ----AKQELKIQELNNKIDTEIA------NLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 34456777777777777765 3466767776666664211 1336678888877777765 4899999999
Q ss_pred HHHhh
Q 004120 729 AEISD 733 (773)
Q Consensus 729 ~e~a~ 733 (773)
.++-+
T Consensus 152 ~~~lr 156 (177)
T PF07798_consen 152 WDTLR 156 (177)
T ss_pred HHHHH
Confidence 88744
No 172
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.33 E-value=71 Score=41.23 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 004120 439 DEVEKLKQQI 448 (773)
Q Consensus 439 ~~~~~~~~~~ 448 (773)
.+|++|..+.
T Consensus 778 ~~v~~le~~l 787 (1293)
T KOG0996|consen 778 ESVEKLERAL 787 (1293)
T ss_pred HHHHHHHHHH
Confidence 3444554443
No 173
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.26 E-value=24 Score=42.53 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=12.7
Q ss_pred CCCchHHHHHHHHHHHHHhHHH
Q 004120 457 KPPDAALNVMIQKLKKEVDHEF 478 (773)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~ 478 (773)
..|-.-+...+++++.-++.|.
T Consensus 292 ~~p~~l~~~ll~~~~~q~~~e~ 313 (650)
T TIGR03185 292 PLPLLLIPNLLDSTKAQLQKEE 313 (650)
T ss_pred cCCHhhhHHHHHHHHHHHHHHH
Confidence 3444455566666666666654
No 174
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.16 E-value=55 Score=42.82 Aligned_cols=130 Identities=15% Similarity=0.256 Sum_probs=70.6
Q ss_pred HHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhc----CcchHHHHHHHHHHHhhcCCCC
Q 004120 522 EFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVIC----RPDIKEKMEAIKAKLQDSGASS 597 (773)
Q Consensus 522 ~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~----~~~lkek~~~lk~E~~ka~~s~ 597 (773)
..++.|..+-.+..+.-+++++++. +...+..+.++.......|.+.+. .+.|.+.|..++.++...
T Consensus 519 ~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~el~~~---- 589 (1311)
T TIGR00606 519 KLDQEMEQLNHHTTTRTQMEMLTKD-----KMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQT---- 589 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH----
Confidence 3445555566666666666666532 233455566666776666766652 266677777777777654
Q ss_pred CCCCChHHHHHHHHHH---HHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHh
Q 004120 598 FSDLEDDLKEKLVETK---KEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDV 668 (773)
Q Consensus 598 ~~~l~~~Lkeki~k~k---~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~ 668 (773)
.+++.++. .+.+..+..+...+.-.-..+.+....+.+.....++..-++.++.++.+..+++
T Consensus 590 --------~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~~~~ 655 (1311)
T TIGR00606 590 --------RDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQR 655 (1311)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 23333333 3344444444333333333333333333343344566667777777777666554
No 175
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.40 E-value=14 Score=41.05 Aligned_cols=161 Identities=17% Similarity=0.227 Sum_probs=90.9
Q ss_pred hHHHHHHHhhhhccccccchh----HHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHH
Q 004120 535 SLKYKLDMLKEFSNAKSLLDS----KNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLV 610 (773)
Q Consensus 535 ~Lk~ki~~~ke~s~~~~~~~~----~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~ 610 (773)
.+.+|+...|.+++..+..+= .++++-||..++..+. ++++=.+.|...+... +.+-|.|+++-.
T Consensus 114 lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~------~l~~D~~~L~~~~~~l-----~~~~~~l~~~~~ 182 (312)
T smart00787 114 LMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLE------GLKEDYKLLMKELELL-----NSIKPKLRDRKD 182 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 346778888888876654432 2355667777776665 5555555555555544 466778888888
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCC
Q 004120 611 ETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGK 690 (773)
Q Consensus 611 k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~ 690 (773)
.++.|+++.-..+-.-=..+-+ -...+++++.++..+|..+..++ .+++..++.|+..|.
T Consensus 183 ~L~~e~~~L~~~~~e~~~~d~~-------------eL~~lk~~l~~~~~ei~~~~~~l---~e~~~~l~~l~~~I~---- 242 (312)
T smart00787 183 ALEEELRQLKQLEDELEDCDPT-------------ELDRAKEKLKKLLQEIMIKVKKL---EELEEELQELESKIE---- 242 (312)
T ss_pred HHHHHHHHHHHhHHHHHhCCHH-------------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----
Confidence 8888876533222111111111 11234556666667766666554 456666666666665
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH------hC---ChhhHHHHHHHHHHH
Q 004120 691 KPDVKSKCKIQALEQQIKQRLSEA------VN---SSELKEKHEELMAEI 731 (773)
Q Consensus 691 ~p~~~~k~KIe~l~~~I~~~ie~a------~~---ss~lk~k~E~Lk~e~ 731 (773)
+..+++.+++.+|++- +.. .+ .+.||.++..|..--
T Consensus 243 ----~~~~~k~e~~~~I~~a-e~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~ 287 (312)
T smart00787 243 ----DLTNKKSELNTEIAEA-EKKLEQCRGFTFKEIEKLKEQLKLLQSLT 287 (312)
T ss_pred ----HHHHHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3356666666666542 221 12 234677777766544
No 176
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=88.22 E-value=17 Score=45.78 Aligned_cols=89 Identities=25% Similarity=0.418 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHh
Q 004120 512 LMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQ 591 (773)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ 591 (773)
+..||..|..|..... -|...|++.|++++ ..+++|.||+..=|+++=.+=--.+++.+|++--.
T Consensus 182 le~kir~LrqElEEK~---enll~lr~eLddle------------ae~~klrqe~~e~l~ea~ra~~yrdeldalre~ae 246 (1195)
T KOG4643|consen 182 LEKKIRTLRQELEEKF---ENLLRLRNELDDLE------------AEISKLRQEIEEFLDEAHRADRYRDELDALREQAE 246 (1195)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhh
Confidence 4566777766665554 56778888888876 23778999999999998888778889999988444
Q ss_pred hcCCCCCCCCChH--HHHHHHHHHHH
Q 004120 592 DSGASSFSDLEDD--LKEKLVETKKE 615 (773)
Q Consensus 592 ka~~s~~~~l~~~--Lkeki~k~k~E 615 (773)
..+..--.-+.+. +|+.++.+++.
T Consensus 247 r~d~~ykerlmDs~fykdRveelked 272 (1195)
T KOG4643|consen 247 RPDTTYKERLMDSDFYKDRVEELKED 272 (1195)
T ss_pred cCCCccchhhhhhHHHHHHHHHHHhh
Confidence 4432223334444 78888888765
No 177
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.05 E-value=29 Score=38.36 Aligned_cols=159 Identities=19% Similarity=0.309 Sum_probs=72.7
Q ss_pred hHHHHHHHhhhhccccccchhH----HHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHH
Q 004120 535 SLKYKLDMLKEFSNAKSLLDSK----NKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLV 610 (773)
Q Consensus 535 ~Lk~ki~~~ke~s~~~~~~~~~----~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~ 610 (773)
.+++|+.-.|..++..+..+== ++++.|+..+...+. +|++-.+.|..-.... +.+-|.|.++-.
T Consensus 119 ~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~------~L~~D~~~L~~~~~~l-----~~~~~~l~~~~~ 187 (325)
T PF08317_consen 119 LMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLE------LLQEDYAKLDKQLEQL-----DELLPKLRERKA 187 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 3567777788777766444322 244455555555544 4444444444433332 233344444444
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHhhhHHHHh--hhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhh
Q 004120 611 ETKKEIESELIDGLESLGLDVEVVKSKAKEL--SEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKA 688 (773)
Q Consensus 611 k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~--~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evaka 688 (773)
.++.|+. -+++.+.+. .++.....++.++..++.+|..+=.++ .+++.+++.|+.+|.
T Consensus 188 ~L~~e~~---------------~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l---~el~~el~~l~~~i~-- 247 (325)
T PF08317_consen 188 ELEEELE---------------NLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKEL---AELQEELEELEEKIE-- 247 (325)
T ss_pred HHHHHHH---------------HHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH--
Confidence 4444433 222111111 111111122233333333333222222 445555555655554
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHhC---------ChhhHHHHHHHHHHH
Q 004120 689 GKKPDVKSKCKIQALEQQIKQRLSEAVN---------SSELKEKHEELMAEI 731 (773)
Q Consensus 689 g~~p~~~~k~KIe~l~~~I~~~ie~a~~---------ss~lk~k~E~Lk~e~ 731 (773)
+..+++.+++.+|.+ ++...+ ...||.+++.|..-.
T Consensus 248 ------~~~~~k~~l~~eI~e-~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 248 ------ELEEQKQELLAEIAE-AEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred ------HHHHHHHHHHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 335566666666654 222222 345777877777655
No 178
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.77 E-value=77 Score=36.87 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHh
Q 004120 436 KLEDEVEKLKQQILKA 451 (773)
Q Consensus 436 ~~~~~~~~~~~~~~~~ 451 (773)
+++.++..|..+|-..
T Consensus 178 e~~~~i~~l~~~i~~l 193 (562)
T PHA02562 178 ELNQQIQTLDMKIDHI 193 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555554433
No 179
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.57 E-value=93 Score=37.60 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004120 374 IKIAINESMDELGKMDTQELLKHRNLKF 401 (773)
Q Consensus 374 L~~aL~~~L~eL~~l~~~~l~~~R~~k~ 401 (773)
....|..++..|..++.-+.+......|
T Consensus 167 ~~~~l~~Ai~~LlGl~~~~~L~~dl~~~ 194 (650)
T TIGR03185 167 LASLLKEAIEVLLGLDLIDRLAGDLTNV 194 (650)
T ss_pred chHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3445777778888888766666655554
No 180
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=84.75 E-value=40 Score=45.26 Aligned_cols=153 Identities=20% Similarity=0.270 Sum_probs=85.5
Q ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCCh---HHHHHHHHHHHHHhhccCCCCCh
Q 004120 457 KPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDP---ILMDKITELKNEFNQGLASAPNY 533 (773)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n~ 533 (773)
.+...+|...|.-|.+|-+- +..++..++.|-..-+.+.-+++. -|...+.....+|+.-......+
T Consensus 1145 ~~g~sdL~~iv~~LR~Ekei----------~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~ 1214 (1822)
T KOG4674|consen 1145 LLGLSDLQNIVSFLRKEKEI----------AETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEH 1214 (1822)
T ss_pred ccchHHHHHHHHHHHhHHHH----------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 33455677777777777542 345666666666555555444333 34555666666777667777777
Q ss_pred hhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHH
Q 004120 534 ASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETK 613 (773)
Q Consensus 534 ~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k 613 (773)
..+-.++..++ .+.+.|.+ |..|.+..+.-. -.|+++++.|+.|+. ..+.-.-.|+.+|...+
T Consensus 1215 ~~i~~~v~~vN------ll~EsN~~---LRee~~~~~~k~---qEl~~~i~kl~~el~-----plq~~l~el~~e~~~~~ 1277 (1822)
T KOG4674|consen 1215 KEILEKVEEVN------LLRESNKV---LREENEANLEKI---QELRDKIEKLNFELA-----PLQNELKELKAELQEKV 1277 (1822)
T ss_pred hHHHHHHHHHH------HHHHhHHH---HHHHHHHHHHHH---HHHHHHHHHHHhhHh-----hHHHHHHHHHHHHHHHH
Confidence 77766666655 22344444 555555544422 456666666666554 22333334444444333
Q ss_pred HHHHHHHHHHHhhcCcchHHhhhHHHHhhhc
Q 004120 614 KEIESELIDGLESLGLDVEVVKSKAKELSEQ 644 (773)
Q Consensus 614 ~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~ 644 (773)
.| ++.|...++-++.|...+.++
T Consensus 1278 ae--------l~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1278 AE--------LKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 32 556666667777666666554
No 181
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=84.69 E-value=25 Score=45.32 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHH
Q 004120 512 LMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEI 566 (773)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei 566 (773)
|...+++|+.+-++ |-.|..|+.++..+............+..++.+..++
T Consensus 198 l~~~l~~L~~q~~~----a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l 248 (1163)
T COG1196 198 LEKQLEKLERQAEK----AERYQELKAELRELELALLLAKLKELRKELEELEEEL 248 (1163)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555443 4467777777777765555444444444444433333
No 182
>PLN02939 transferase, transferring glycosyl groups
Probab=84.60 E-value=12 Score=47.10 Aligned_cols=99 Identities=24% Similarity=0.286 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHhhcCCCC-----CCCCChHHHHHHHHHHHHHHHHHHHH--HhhcCcchHHhhhHHHHhhhccccchhh
Q 004120 579 IKEKMEAIKAKLQDSGASS-----FSDLEDDLKEKLVETKKEIESELIDG--LESLGLDVEVVKSKAKELSEQTSFSNFR 651 (773)
Q Consensus 579 lkek~~~lk~E~~ka~~s~-----~~~l~~~Lkeki~k~k~Ef~~~l~~~--~~sl~~~~~~l~sk~k~~~~~~~~~~~~ 651 (773)
+-||.|.|..=+.++-+-- --+=|++|.+||++++.- |.++ |+---..++.+..|+|.+-+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 365 (977)
T PLN02939 298 WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEAS----LKEANVSKFSSYKVELLQQKLKLLEE-------- 365 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH----HHHhhHhhhhHHHHHHHHHHHHHHHH--------
Confidence 5666666665554442211 123467788888877654 3344 55555566777666666654
Q ss_pred hhHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHhhCC
Q 004120 652 SKMENLNEEINKKIEDVINSSD-LKDMIELLKLEIAKAGK 690 (773)
Q Consensus 652 ~k~~~l~~ei~kkie~~~~~~~-ik~kiE~LK~Evakag~ 690 (773)
....-.+||+..++--+.+-+ +..++..||.|-.+...
T Consensus 366 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (977)
T PLN02939 366 -RLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSL 404 (977)
T ss_pred -HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 444555666666665555443 77777778887766443
No 183
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.59 E-value=1e+02 Score=40.17 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=15.6
Q ss_pred ChhhhHHHHHHHHHHHHHhhh
Q 004120 433 SKEKLEDEVEKLKQQILKAKE 453 (773)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~ 453 (773)
...+|+.+++.+..+|..+..
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~ 621 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEE 621 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 445788888888888877664
No 184
>PRK02224 chromosome segregation protein; Provisional
Probab=84.36 E-value=1.2e+02 Score=37.72 Aligned_cols=8 Identities=13% Similarity=0.048 Sum_probs=4.1
Q ss_pred CcEEEEEc
Q 004120 281 VPIISIVI 288 (773)
Q Consensus 281 VP~ISVVi 288 (773)
-+.|.+.+
T Consensus 67 ~~~v~~~f 74 (880)
T PRK02224 67 EAEIELWF 74 (880)
T ss_pred cEEEEEEE
Confidence 34555554
No 185
>PRK02224 chromosome segregation protein; Provisional
Probab=84.00 E-value=1.2e+02 Score=37.60 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHH
Q 004120 674 LKDMIELLKLEIA 686 (773)
Q Consensus 674 ik~kiE~LK~Eva 686 (773)
+.+.++.++..+.
T Consensus 389 l~~el~el~~~l~ 401 (880)
T PRK02224 389 LEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444444
No 186
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.81 E-value=17 Score=43.13 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHH-----HHHH-HHHhhcCcchHHhhhHHHHhhhccccchhh
Q 004120 578 DIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIE-----SELI-DGLESLGLDVEVVKSKAKELSEQTSFSNFR 651 (773)
Q Consensus 578 ~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~-----~~l~-~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~ 651 (773)
+|..-|.-+|++...-..-.-.+|-+-.+.||.+++.-.+ ...+ +-+.++-..+..|++|+.++-. .+..+.
T Consensus 246 eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~--~n~~L~ 323 (546)
T KOG0977|consen 246 ELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELES--RNSALE 323 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccc--cChhHH
Confidence 4455555566666555444556666666666666652111 0011 1145555555555544444442 222444
Q ss_pred hhHHHHHH
Q 004120 652 SKMENLNE 659 (773)
Q Consensus 652 ~k~~~l~~ 659 (773)
..|+.|+-
T Consensus 324 ~~I~dL~~ 331 (546)
T KOG0977|consen 324 KRIEDLEY 331 (546)
T ss_pred HHHHHHHh
Confidence 44444443
No 187
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.65 E-value=18 Score=45.10 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=30.1
Q ss_pred hhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHh
Q 004120 534 ASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQ 591 (773)
Q Consensus 534 ~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ 591 (773)
++.|-++.-+.||-+.+ -..+.-|++||...=.|+-.+.+.+|++.-.=++++
T Consensus 258 ekmkiqleqlqEfkSki-----m~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~a 310 (1243)
T KOG0971|consen 258 EKMKIQLEQLQEFKSKI-----MEQQADLQRELKRARKEAKEAQEAKERYKEEMADTA 310 (1243)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554332 233445777777766666666666666655444444
No 188
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=82.84 E-value=49 Score=41.05 Aligned_cols=134 Identities=24% Similarity=0.358 Sum_probs=83.8
Q ss_pred HHHHHHHHhHHh-hcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHH-------------HHHHHHHH---H
Q 004120 562 LKQEINKKFEEV-ICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKE-------------IESELIDG---L 624 (773)
Q Consensus 562 Lk~Ei~~~~~ea-~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~E-------------f~~~l~~~---~ 624 (773)
+++|+.++-..| |+.-.|++|.+..++|.+.- -.+--.+-+.|+.+|.- ...+|+++ +
T Consensus 352 k~~eLEKkrd~al~dvr~i~e~k~nve~elqsL-----~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekl 426 (1265)
T KOG0976|consen 352 KLNELEKKRDMALMDVRSIQEKKENVEEELQSL-----LELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKL 426 (1265)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHH
Confidence 445555555554 45566888888888877754 11112223333333321 22347777 5
Q ss_pred hhcCcchHHhh---hHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHH----HHHHHHHHhhCCCCChhhH
Q 004120 625 ESLGLDVEVVK---SKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMI----ELLKLEIAKAGKKPDVKSK 697 (773)
Q Consensus 625 ~sl~~~~~~l~---sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~ki----E~LK~Evakag~~p~~~~k 697 (773)
--||-.+.|+- |..|.|.+... +-....-+--.|.--.|...|++|+=+.|| |.||+|..+ .+
T Consensus 427 d~mgthl~mad~Q~s~fk~Lke~ae--gsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~r--------qa 496 (1265)
T KOG0976|consen 427 DLMGTHLSMADYQLSNFKVLKEHAE--GSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENER--------QA 496 (1265)
T ss_pred HHHhHHHHHHHHHHhhHHHHHHhhh--hhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHH--------HH
Confidence 55677777777 77777776533 334444444456667899999999977777 568887653 37
Q ss_pred HHHHHHHHHHHHH
Q 004120 698 CKIQALEQQIKQR 710 (773)
Q Consensus 698 ~KIe~l~~~I~~~ 710 (773)
.||+.++++|++.
T Consensus 497 kkiefmkEeiQet 509 (1265)
T KOG0976|consen 497 KKIEFMKEEIQET 509 (1265)
T ss_pred HHHHHHHHHHHHH
Confidence 7999999988754
No 189
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=82.15 E-value=4.2 Score=40.84 Aligned_cols=90 Identities=23% Similarity=0.398 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHH---HhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchH
Q 004120 556 KNKAAKLKQEINK---KFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVE 632 (773)
Q Consensus 556 ~~~~~~Lk~Ei~~---~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~ 632 (773)
+....+|+.||+. ++++++. .++.|++...+++.+. ||++.+++.++...|...+-... -+++
T Consensus 44 ~~~~~~l~eeik~~n~~~~e~l~--~~~~kl~et~~~L~k~--------~Pev~~qa~~l~e~lQ~~vq~l~----~E~q 109 (155)
T PF07464_consen 44 QNVSSSLQEEIKDANPEAEEALK--QLKTKLEETAEKLRKA--------NPEVEKQANELQEKLQSAVQSLV----QESQ 109 (155)
T ss_dssp HHHHHHHHHHHTT-SSTHHHHHH--HHHHHHHHHHHGGGG---------SHHHHHT-SSSHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHHHHHhcChhHHHHHH--HHHHHHHHHHHHHHhc--------ChHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3445567777777 7777774 5788888888888875 89999999999988886554442 2222
Q ss_pred HhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhcc
Q 004120 633 VVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINS 671 (773)
Q Consensus 633 ~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~ 671 (773)
.+- +++++ .+...+++|...|+.++++
T Consensus 110 k~~---k~v~~---------~~~~~~e~l~~~~K~~~D~ 136 (155)
T PF07464_consen 110 KLA---KEVSE---------NSEGANEKLQPAIKQAYDD 136 (155)
T ss_dssp HHH---HHHHS------------SS-GGGHHHHHHHHHH
T ss_pred HHH---HHHHH---------HHHhhhHHHHHHHHHHHHH
Confidence 222 23322 3444566666666666554
No 190
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=80.71 E-value=92 Score=39.93 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 004120 438 EDEVEKLKQQILKAKE 453 (773)
Q Consensus 438 ~~~~~~~~~~~~~~~~ 453 (773)
+.++..|+++|-++++
T Consensus 234 ~e~i~~l~k~i~e~~e 249 (1074)
T KOG0250|consen 234 EEEIKNLKKKIKEEEE 249 (1074)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 4444445555544443
No 191
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=80.62 E-value=1.1e+02 Score=39.96 Aligned_cols=11 Identities=64% Similarity=0.746 Sum_probs=4.8
Q ss_pred ChhhHHHHHHH
Q 004120 717 SSELKEKHEEL 727 (773)
Q Consensus 717 ss~lk~k~E~L 727 (773)
.+++-+.++.+
T Consensus 934 ~~~~~~~~~~~ 944 (1201)
T PF12128_consen 934 GSELAENWEEL 944 (1201)
T ss_pred ccchHHHHHHH
Confidence 34444444444
No 192
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.55 E-value=21 Score=37.64 Aligned_cols=109 Identities=28% Similarity=0.375 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHHH---------HHHH-Hhhc-CcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhcc
Q 004120 603 DDLKEKLVETKKEIESE---------LIDG-LESL-GLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINS 671 (773)
Q Consensus 603 ~~Lkeki~k~k~Ef~~~---------l~~~-~~sl-~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~ 671 (773)
..|-+++...+.|++++ ++.| |.+| ..++.|++ -+..++-|- -.......++.||+.+|...
T Consensus 36 ~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~E~~mlK--tqrv~e~nl--re~e~~~q~k~Eiersi~~a--- 108 (222)
T KOG3215|consen 36 EHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQDEPSMLK--TQRVIEMNL--REIENLVQKKLEIERSIQKA--- 108 (222)
T ss_pred HHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhcccchHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---
Confidence 34445555555555442 2223 3333 34566666 333333221 22345667888999999865
Q ss_pred chhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhC----ChhhHHHHHHHHHHH
Q 004120 672 SDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVN----SSELKEKHEELMAEI 731 (773)
Q Consensus 672 ~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~----ss~lk~k~E~Lk~e~ 731 (773)
+++||.||-+++ ..||..+++|=-..|..++. -|+---++..|+.|+
T Consensus 109 ---~~kie~lkkql~----------eaKi~r~nrqe~~~l~kvis~~p~RsEt~k~l~el~kel 159 (222)
T KOG3215|consen 109 ---RNKIELLKKQLH----------EAKIVRLNRQEYSALSKVISDCPARSETDKDLNELKKEL 159 (222)
T ss_pred ---HHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 889999999998 67777777775555555443 344333444555554
No 193
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=80.55 E-value=35 Score=40.35 Aligned_cols=152 Identities=20% Similarity=0.267 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhHHHH-----HHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHH---
Q 004120 511 ILMDKITELKNEFNQGLASAPNYASLKYK-----LDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEK--- 582 (773)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~n~~~Lk~k-----i~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek--- 582 (773)
.+..+++.|..-|+-+|++.+--..|-+| ++-++|.+.+...+- +.-...| .+++-+|..+=-++.++|+
T Consensus 305 ~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv-~~l~~~l-kDLd~~~~aLs~rld~qEqtL~ 382 (531)
T PF15450_consen 305 LEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSV-AELMRQL-KDLDDHILALSWRLDLQEQTLN 382 (531)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHhhhhhHHHHHHH
Confidence 35567777777777777775544433332 333444443322211 1111122 3444444444444555544
Q ss_pred --HHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHH
Q 004120 583 --MEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEE 660 (773)
Q Consensus 583 --~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~e 660 (773)
|..++.|+..+ .....++|....+|++.- ++.+.-+|+-|++-...+++ |...+|.+
T Consensus 383 ~rL~e~~~e~~~~--------~r~~lekl~~~q~e~~~~----l~~v~eKVd~LpqqI~~vs~---------Kc~~~Ksd 441 (531)
T PF15450_consen 383 LRLSEAKNEWESD--------ERKSLEKLDQWQNEMEKH----LKEVQEKVDSLPQQIEEVSD---------KCDLHKSD 441 (531)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHHHH---------HHHHHHhh
Confidence 33444444433 566778888888886543 44555555555544445554 77788888
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHh
Q 004120 661 INKKIEDVINSSDLKDMIELLKLEIAK 687 (773)
Q Consensus 661 i~kkie~~~~~~~ik~kiE~LK~Evak 687 (773)
.|.||....+. .-..|.+++.|++.
T Consensus 442 ~d~kIdtE~k~--R~~eV~~vRqELa~ 466 (531)
T PF15450_consen 442 SDTKIDTEGKA--REREVGAVRQELAT 466 (531)
T ss_pred hhhhccHHHHH--HHHHHHHHHHHHHH
Confidence 88888755432 33456777777775
No 194
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=80.43 E-value=62 Score=38.60 Aligned_cols=109 Identities=10% Similarity=0.181 Sum_probs=55.7
Q ss_pred ChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhHHHHHH----HHHcCcHHHHHHHHHHhccCCCCCCCC
Q 004120 433 SKEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEA----AKAMGMQEKFATLRAEFSKGNSRDQLM 508 (773)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (773)
+..++..++..+++++-.+...=....-....+-++.+..+||+=|.-- -.---....+..+..-+..+...
T Consensus 246 ~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~---- 321 (560)
T PF06160_consen 246 EHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQ---- 321 (560)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----
Confidence 4556777777777777766653322222223334444555555444211 11112233333444444433322
Q ss_pred ChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhh
Q 004120 509 DPILMDKITELKNEFNQGLASAPNYASLKYKLDMLKE 545 (773)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke 545 (773)
+-.|...++.+++.|.-.=....++..|.++|..+..
T Consensus 322 ~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~ 358 (560)
T PF06160_consen 322 NKELKEELERVSQSYTLNHNELEIVRELEKQLKELEK 358 (560)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 2356777777777775444455566777777666553
No 195
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=80.27 E-value=23 Score=42.21 Aligned_cols=13 Identities=46% Similarity=0.741 Sum_probs=10.4
Q ss_pred HHHHHHHHHhHHh
Q 004120 561 KLKQEINKKFEEV 573 (773)
Q Consensus 561 ~Lk~Ei~~~~~ea 573 (773)
||.+|||+=|..+
T Consensus 5 KLq~eIdr~lkKv 17 (575)
T KOG2150|consen 5 KLQQEIDRCLKKV 17 (575)
T ss_pred HHHHHHHHHHHHh
Confidence 6999999887743
No 196
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.78 E-value=1.7e+02 Score=36.65 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHhhcc
Q 004120 696 SKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEISDAT 735 (773)
Q Consensus 696 ~k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~Lk~e~a~a~ 735 (773)
...||-...||=... .|+-.+.++|++.||.-+.+=+
T Consensus 902 l~lki~s~kqeqee~---~v~~~~~~~~i~alk~~l~dL~ 938 (970)
T KOG0946|consen 902 LSLKIVSNKQEQEEL---LVLLADQKEKIQALKEALEDLN 938 (970)
T ss_pred chhcccchhhhHHHH---HHHHhhHHHHHHHHHHHHHHhC
Confidence 344566665554433 3444556666666666654443
No 197
>PF13514 AAA_27: AAA domain
Probab=79.73 E-value=1.5e+02 Score=38.10 Aligned_cols=224 Identities=20% Similarity=0.306 Sum_probs=141.2
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcch
Q 004120 500 KGNSRDQLMDPILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDI 579 (773)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~l 579 (773)
|-+..+..||- +...++++..+.+..-..+..|..|++.+..+.+- ..++...+..|..+.+ ++..+.....+
T Consensus 144 kprg~~~~in~-~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~-----~~~l~~~~~~l~~~~~-~ler~~~~~p~ 216 (1111)
T PF13514_consen 144 KPRGRKPEINQ-ALKELKELERELREAEVRAAEYQELQQALEEAEEE-----LEELRAELKELRAELR-RLERLRRAWPL 216 (1111)
T ss_pred CCCCCChHHHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH-HHHHHHHHhHH
Confidence 44445555554 45578889999999999999999999999988743 3345666667777754 45667777778
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHH
Q 004120 580 KEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNE 659 (773)
Q Consensus 580 kek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ 659 (773)
-..+..|+.++..- ..--.++++-.+++.++..+... +..-+..+.-++.-+..+...+.-.....+....|+.|.+
T Consensus 217 ~~~~~~l~~~l~~l--~~~~~~p~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~ 293 (1111)
T PF13514_consen 217 LAELQQLEAELAEL--GEVPDFPEDGAERLEQLEEELAE-AQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEE 293 (1111)
T ss_pred HHHHHHHHHHHHhc--CCcCCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHH
Confidence 88888999988755 34456888888999988876442 2233666666666666555544433333355667777777
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHh----hCC----------CCChhhHHHHHHHHHHH---HHHHHHHhCChh-hH
Q 004120 660 EINKKIEDVINSSDLKDMIELLKLEIAK----AGK----------KPDVKSKCKIQALEQQI---KQRLSEAVNSSE-LK 721 (773)
Q Consensus 660 ei~kkie~~~~~~~ik~kiE~LK~Evak----ag~----------~p~~~~k~KIe~l~~~I---~~~ie~a~~ss~-lk 721 (773)
....--...-+-|.+...+..++.++.. -|. .|+......|+.|.++- .+.+..+-..-. .+
T Consensus 294 ~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~ 373 (1111)
T PF13514_consen 294 QRGEYRKARQDLPRLEAELAELEAELRALLAQLGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAE 373 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666555555567677777666655543 231 23444466777776532 223333322222 55
Q ss_pred HHHHHHHHHHhh
Q 004120 722 EKHEELMAEISD 733 (773)
Q Consensus 722 ~k~E~Lk~e~a~ 733 (773)
..++.+..+++.
T Consensus 374 ~~~~~~~~~~~~ 385 (1111)
T PF13514_consen 374 RELEQLQAELAA 385 (1111)
T ss_pred HHHHHHHHHHhh
Confidence 555555666533
No 198
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=79.16 E-value=59 Score=38.49 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHhhccCCCCCCCC
Q 004120 699 KIQALEQQIKQRLSEAVNSSELKEKHEELMAEISDATKSPGGLDG 743 (773)
Q Consensus 699 KIe~l~~~I~~~ie~a~~ss~lk~k~E~Lk~e~a~a~~~~~~~~~ 743 (773)
=|..|.....++ -+.....|.+.|..+..++-++..-|.+..|
T Consensus 452 ~l~~l~~~a~~~--Gv~s~~~L~~rf~~v~~~~r~~~l~~~~~~g 494 (582)
T PF09731_consen 452 ALSSLPPEAAQR--GVPSEAQLRNRFERVAPEVRRASLVPPEGAG 494 (582)
T ss_pred HHHhcCHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 344444443332 3566667999999999999988888665555
No 199
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.69 E-value=1.6e+02 Score=35.52 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhCChh-hHHHHHHHHHHHhh
Q 004120 699 KIQALEQQIKQRLSEAVNSSE-LKEKHEELMAEISD 733 (773)
Q Consensus 699 KIe~l~~~I~~~ie~a~~ss~-lk~k~E~Lk~e~a~ 733 (773)
.++++.+|+---|..+++--. +.+.+|+++..+.+
T Consensus 536 er~ki~~ql~~~i~~i~~~k~~iqs~le~~k~~~~~ 571 (581)
T KOG0995|consen 536 ERQKIAKQLFAVIDQISDFKVSIQSSLENLKADLHK 571 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555554444 77788888877643
No 200
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=78.69 E-value=26 Score=39.65 Aligned_cols=161 Identities=24% Similarity=0.354 Sum_probs=104.0
Q ss_pred ccCCCCCCCCChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCC
Q 004120 423 KKEGPIASKTSKEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGN 502 (773)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (773)
+....+..++...+...|||..-.|+-..-.+..+--...+.+|. +++..|..-+.+ ..-.|.+|..+++++
T Consensus 182 ~~~~i~es~vd~~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~-~~~~~I~~~~~~------~~~~L~kl~~~i~~~- 253 (359)
T PF10498_consen 182 KPEEIIESKVDPAEWKLEVERVLPQLKVTIRADAKDWRSHLEQMK-QHKKSIESALPE------TKSQLDKLQQDISKT- 253 (359)
T ss_pred chhhcccccCCHHHHHHHHHHHhhhheeeccCCcchHHHHHHHHH-HHHHHHHHhhhH------HHHHHHHHHHHHHHH-
Confidence 344556667889999999999888873222233344445566664 344445444433 355678888888875
Q ss_pred CCCCCCChHHHHHHHHHHHHHhhccCC-CCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHH
Q 004120 503 SRDQLMDPILMDKITELKNEFNQGLAS-APNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKE 581 (773)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lke 581 (773)
.+||..-..-+|++|.. --+|..++.++..+++-.+. .+.-+..+-+|+++ |.|
T Consensus 254 ----------lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~-----~s~~V~~~t~~L~~----------Ise 308 (359)
T PF10498_consen 254 ----------LEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQ-----ASEGVSERTRELAE----------ISE 308 (359)
T ss_pred ----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHH----------HHH
Confidence 46666666666666543 23477777777777655533 23444445555543 889
Q ss_pred HHHHHHHHHhhcCCCCCCCCCh--HHHHHHHHHHHHHH
Q 004120 582 KMEAIKAKLQDSGASSFSDLED--DLKEKLVETKKEIE 617 (773)
Q Consensus 582 k~~~lk~E~~ka~~s~~~~l~~--~Lkeki~k~k~Ef~ 617 (773)
.++.+|.|+..-|++- .+=.| -.|+-|.+||.|+.
T Consensus 309 eLe~vK~emeerg~~m-tD~sPlv~IKqAl~kLk~EI~ 345 (359)
T PF10498_consen 309 ELEQVKQEMEERGSSM-TDGSPLVKIKQALTKLKQEIK 345 (359)
T ss_pred HHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHH
Confidence 9999999998876443 22366 67888999999975
No 201
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=78.01 E-value=1e+02 Score=36.52 Aligned_cols=151 Identities=19% Similarity=0.261 Sum_probs=75.4
Q ss_pred hHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHH
Q 004120 535 SLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKK 614 (773)
Q Consensus 535 ~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~ 614 (773)
.|+++|....+..... +.+++...++|+.++|. -.|+++++.-|.-.... | ..|..+|..+.+
T Consensus 330 ~L~~eL~~~~~~~~~~----l~~~l~~~~~e~~~~~~-----~~i~~~v~~Er~~~~~~-------l-~~~~~~~~~le~ 392 (582)
T PF09731_consen 330 ELRQELKRQEEAHEEH----LKNELREQAIELQREFE-----KEIKEKVEQERNGRLAK-------L-AELNSRLKALEE 392 (582)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHH
Confidence 3555665555555444 66777777788877777 44555555555422211 0 112222222211
Q ss_pred ---HHHHHHHHH--HhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhC
Q 004120 615 ---EIESELIDG--LESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAG 689 (773)
Q Consensus 615 ---Ef~~~l~~~--~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag 689 (773)
.....+... ...|-+-+..|++.+..-.... +..|...+..|+.= .-++|-|.--+..|-.+....|
T Consensus 393 ~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~-~~p~~~el~~l~~~-------~~~d~~v~~~l~~l~~~a~~~G 464 (582)
T PF09731_consen 393 ALDARSEAEDENRRAQQLWLAVDALKSALDSGNAGS-PRPFEDELRALKEL-------APDDELVDAALSSLPPEAAQRG 464 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC-CCCHHHHHHHHHHh-------CCCChHHHHHHHhcCHHHhhCC
Confidence 111111111 2222222333332221111100 13455555555443 3334557777777877777778
Q ss_pred CCCChhhHHHHHHHHHHHHHH
Q 004120 690 KKPDVKSKCKIQALEQQIKQR 710 (773)
Q Consensus 690 ~~p~~~~k~KIe~l~~~I~~~ 710 (773)
..|...+.++-..+...++.-
T Consensus 465 v~s~~~L~~rf~~v~~~~r~~ 485 (582)
T PF09731_consen 465 VPSEAQLRNRFERVAPEVRRA 485 (582)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 888888888888777777764
No 202
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.88 E-value=1.1e+02 Score=39.25 Aligned_cols=61 Identities=33% Similarity=0.375 Sum_probs=35.5
Q ss_pred CChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccC
Q 004120 432 TSKEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKG 501 (773)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (773)
+.+.++..|.+.||..+.+|-+..+.. -+-++.|..|-.+|-..--..++...+..+..++
T Consensus 153 SgSiElK~EYeelK~E~~kAE~~t~~~---------~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~ 213 (1141)
T KOG0018|consen 153 SGSIELKPEYEELKYEMAKAEETTTGN---------YKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKA 213 (1141)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhH---------hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 346788999999999999998765322 1223344444444433333444555555554444
No 203
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=76.66 E-value=1.2e+02 Score=34.91 Aligned_cols=164 Identities=13% Similarity=0.074 Sum_probs=92.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCC-CCCC-Hh----HHH--h---chHHHHHHH----HHHHhCCCCcE
Q 004120 220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPG-AYAD-LK----SEE--L---GQGEAIAHN----LRTMFGLKVPI 283 (773)
Q Consensus 220 gG~~~peg~rKA~R~m~lAek-f~LPIVtLIDTpG-A~~g-~~----AEe--~---Gqa~aIAr~----L~ams~l~VP~ 283 (773)
-.+++-+..++..-...-.+. ...-+|.+--++| |++. .+ +|. . +.....++. ...++....|+
T Consensus 59 LNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl~~~igtY~KP~ 138 (401)
T KOG1684|consen 59 LNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSLNHLIGTYLKPY 138 (401)
T ss_pred hccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHhcCce
Confidence 356888888888777654443 3344565555555 3332 11 221 1 223444444 34566788999
Q ss_pred EEEEcCCCccchhhhccccceeeeecCCe-------eeeeCHHHHHHH-hhhhccCchHHHHH-----hcccHHHHHHcC
Q 004120 284 ISIVIGEGGSGGALAIGCANKLLMLENAV-------FYVASPEACAAI-LWKSAKASPKAAEK-----LKITGSELCKLQ 350 (773)
Q Consensus 284 ISVViGeg~GGGAlA~g~aD~Vlm~e~A~-------~sVisPEgaAsI-l~rd~~~a~eaAe~-----lkitA~dL~~lG 350 (773)
|+++-|=..|||.-....+-|.++.+... +++. |.+.++. +-|-+- ..... ++++..|.+..|
T Consensus 139 ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlf-PDVG~Sy~lsrlpg---~lg~YLgLTG~rl~GaD~~~~G 214 (401)
T KOG1684|consen 139 VALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLF-PDVGASYFLSRLPG---YLGLYLGLTGQRLSGADALRCG 214 (401)
T ss_pred EEEeeceeecCCcceeecceeEEeeccceecccccccccc-cCccceeehhhCcc---HHHHhhhhccceecchHHHHhc
Confidence 99999998888766555555665555544 3333 3333333 322221 23334 356678999999
Q ss_pred CceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004120 351 IADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKF 401 (773)
Q Consensus 351 iVD~IIpE~lGgAh~dP~~tr~~L~~aL~~~L~eL~~l~~~~l~~~R~~k~ 401 (773)
+...-|+ .+-...| +..|.....-++++-++.=.++|
T Consensus 215 lATHyv~----------S~~l~~L----ee~L~~~l~~dp~~~I~~~l~~y 251 (401)
T KOG1684|consen 215 LATHYVP----------SEKLPSL----EERLLKNLNDDPQSVINETLEKY 251 (401)
T ss_pred chhhccc----------hhhhhHH----HHHHhhhcCCCcHHHHHHHHHHh
Confidence 8877763 2222333 44444344455655567767775
No 204
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=76.60 E-value=2.2e+02 Score=35.99 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhh
Q 004120 438 EDEVEKLKQQILKAKE 453 (773)
Q Consensus 438 ~~~~~~~~~~~~~~~~ 453 (773)
..++.+|..++-....
T Consensus 673 ~~~l~~l~~~l~~l~~ 688 (1164)
T TIGR02169 673 PAELQRLRERLEGLKR 688 (1164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777777655543
No 205
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=76.32 E-value=12 Score=41.19 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=44.4
Q ss_pred HhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCC-----ChhhHH
Q 004120 624 LESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKP-----DVKSKC 698 (773)
Q Consensus 624 ~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p-----~~~~k~ 698 (773)
=++|.+.+.-|-++-+++++.-+ .++.+-..++....++-+.+ .++-..+|++|.|+..-|++- -+..|+
T Consensus 268 EK~lNnqL~~l~q~fr~a~~~ls--e~~e~y~q~~~gv~~rT~~L---~eVm~e~E~~KqemEe~G~~msDGaplvkIkq 342 (384)
T KOG0972|consen 268 EKSLNNQLASLMQKFRRATDTLS--ELREKYKQASVGVSSRTETL---DEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQ 342 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccHHHHHHHH---HHHHHHHHHHHHHHHHhcccccCCchHHHHHH
Confidence 45555555555555555554322 34444444555555554444 456677899999999988843 333344
Q ss_pred HHHHHHHHH
Q 004120 699 KIQALEQQI 707 (773)
Q Consensus 699 KIe~l~~~I 707 (773)
-|-+|+++.
T Consensus 343 avsKLk~et 351 (384)
T KOG0972|consen 343 AVSKLKEET 351 (384)
T ss_pred HHHHHHHHH
Confidence 444444443
No 206
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=76.27 E-value=1.7e+02 Score=34.66 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=13.5
Q ss_pred ChhhhHHHHHHHHHHHHHhhh
Q 004120 433 SKEKLEDEVEKLKQQILKAKE 453 (773)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~ 453 (773)
...+.+.++.++++++-+.++
T Consensus 28 ~~~~~e~eL~~~qeel~~~k~ 48 (522)
T PF05701_consen 28 RVKEKETELEKAQEELAKLKE 48 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 445566677777777666665
No 207
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=75.84 E-value=2.5e+02 Score=38.71 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHHhhh
Q 004120 435 EKLEDEVEKLKQQILKAKE 453 (773)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~ 453 (773)
...+.|+.+|+.++.+++.
T Consensus 841 ~~~~~e~~~l~~~l~~~e~ 859 (1930)
T KOG0161|consen 841 RAKEEEIQKLKEELQKSES 859 (1930)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3456677777777776664
No 208
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=75.72 E-value=1.4e+02 Score=33.29 Aligned_cols=120 Identities=21% Similarity=0.268 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhhccCCCCCh-hhHHHHHH
Q 004120 463 LNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQGLASAPNY-ASLKYKLD 541 (773)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~-~~Lk~ki~ 541 (773)
+++=|.+|+.+-+.=+..+.. |-.-+..+++.....| ..+.---.|...|++|--.|.. ..-+|+. ..|=++|.
T Consensus 67 ineev~elK~kR~ein~kl~e---L~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~T-~~L~~e~E~~lvq~I~ 141 (294)
T COG1340 67 INEEVQELKEKRDEINAKLQE---LRKEYRELKEKRNEFN-LGGRSIKSLEREIERLEKKQQT-SVLTPEEERELVQKIK 141 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHH
Confidence 444455555554444444443 2223333333322222 2232233345555555443333 3333433 23444444
Q ss_pred Hhhhhc-cccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHH
Q 004120 542 MLKEFS-NAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKL 590 (773)
Q Consensus 542 ~~ke~s-~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~ 590 (773)
.+..-- .....++.+.++..|+.||+..-.+ +-.+.+++..|-.|.
T Consensus 142 ~L~k~le~~~k~~e~~~~~~el~aei~~lk~~---~~e~~eki~~la~ea 188 (294)
T COG1340 142 ELRKELEDAKKALEENEKLKELKAEIDELKKK---AREIHEKIQELANEA 188 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 433211 1233344455555555555543332 234444554444443
No 209
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=74.51 E-value=1.4e+02 Score=38.75 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHhh
Q 004120 512 LMDKITELKNEFNQGLASAPNYASLKYKLDMLK 544 (773)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~k 544 (773)
|..-|.++++-.++.=+.+-..+.|-++++.+.
T Consensus 1473 l~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~ 1505 (1758)
T KOG0994|consen 1473 LRNLIQQVRDFLTQPDADPDSIEEVAEEVLALE 1505 (1758)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Confidence 444445555544454445555555555555443
No 210
>PRK10949 protease 4; Provisional
Probab=74.34 E-value=12 Score=45.20 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhhh-cCCc-EEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCcc-chhhhccc
Q 004120 225 PHGYRKALRMMYYADH-HGFP-IVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGS-GGALAIGC 301 (773)
Q Consensus 225 peg~rKA~R~m~lAek-f~LP-IVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~G-GGAlA~g~ 301 (773)
+-..+..++.++.|.+ -++- ||.=+|++|.... ...+.|.+.+..+...+.|+|++ |..++ |++|..+.
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~------a~~~eI~~ai~~fk~sGKpVvA~--~~~~~s~~YyLASa 165 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQ------PSMQYIGKALREFRDSGKPVYAV--GDSYSQGQYYLASF 165 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccH------HHHHHHHHHHHHHHHhCCeEEEE--ecCccchhhhhhhh
Confidence 4567788888887764 4443 5555788754211 12346778888888788999973 55554 56666677
Q ss_pred cceeeeecCCeeeeeC
Q 004120 302 ANKLLMLENAVFYVAS 317 (773)
Q Consensus 302 aD~Vlm~e~A~~sVis 317 (773)
||.|++.|.+.+++.|
T Consensus 166 AD~I~l~P~G~v~~~G 181 (618)
T PRK10949 166 ANKIYLSPQGVVDLHG 181 (618)
T ss_pred CCEEEECCCceEEEee
Confidence 9999999988876544
No 211
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=74.24 E-value=3 Score=44.29 Aligned_cols=115 Identities=16% Similarity=0.173 Sum_probs=69.9
Q ss_pred CCcEEEE-ecCCCCCCC-HhH-HHhch--------HHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecC
Q 004120 242 GFPIVTF-IDTPGAYAD-LKS-EELGQ--------GEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLEN 310 (773)
Q Consensus 242 ~LPIVtL-IDTpGA~~g-~~A-Ee~Gq--------a~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~ 310 (773)
+.-+|.| --+||.++. .+. |..++ ...+-..+..+.++++|+|+.|-|-+.|||--....||..++..+
T Consensus 75 ~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~ 154 (291)
T KOG1679|consen 75 KVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASS 154 (291)
T ss_pred ceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhh
Confidence 3334433 457777663 222 22222 223444455677899999999999999988666556898888887
Q ss_pred Ceeee-------eCHHHHHHHhhhhccCchHHHHH-----hcccHHHHHHcCCceeeecC
Q 004120 311 AVFYV-------ASPEACAAILWKSAKASPKAAEK-----LKITGSELCKLQIADGVIPE 358 (773)
Q Consensus 311 A~~sV-------isPEgaAsIl~rd~~~a~eaAe~-----lkitA~dL~~lGiVD~IIpE 358 (773)
|.++. ++..|...-++|-... ..|+. ..+...+...+|+|..|+..
T Consensus 155 akmGLvET~laiiPGaGGtQRLpR~vg~--alaKELIftarvl~g~eA~~lGlVnhvv~q 212 (291)
T KOG1679|consen 155 AKMGLVETKLAIIPGAGGTQRLPRIVGV--ALAKELIFTARVLNGAEAAKLGLVNHVVEQ 212 (291)
T ss_pred ccccccccceeeecCCCccchhHHHHhH--HHHHhHhhhheeccchhHHhcchHHHHHhc
Confidence 77654 4444443333332111 11222 24556788899999999953
No 212
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=73.93 E-value=1.2e+02 Score=37.95 Aligned_cols=11 Identities=36% Similarity=0.655 Sum_probs=4.2
Q ss_pred hHHHHHHHHHH
Q 004120 720 LKEKHEELMAE 730 (773)
Q Consensus 720 lk~k~E~Lk~e 730 (773)
++..++.++.+
T Consensus 412 l~~~~~~l~~~ 422 (1179)
T TIGR02168 412 LEDRRERLQQE 422 (1179)
T ss_pred HHHHHHHHHHH
Confidence 33333344333
No 213
>PHA02562 46 endonuclease subunit; Provisional
Probab=73.83 E-value=1.8e+02 Score=33.83 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCC
Q 004120 465 VMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNS 503 (773)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (773)
.-|..++++++.-..++ ..++..+..++.++....+
T Consensus 213 ~~i~~l~~e~~~l~~~~---~~l~~~l~~l~~~i~~l~~ 248 (562)
T PHA02562 213 ENIARKQNKYDELVEEA---KTIKAEIEELTDELLNLVM 248 (562)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 34556666655444433 3467788888888877654
No 214
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=73.73 E-value=1.5e+02 Score=32.92 Aligned_cols=99 Identities=20% Similarity=0.265 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhh--ccccccchhHHHHHHHHHH
Q 004120 488 QEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEF--SNAKSLLDSKNKAAKLKQE 565 (773)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~--s~~~~~~~~~~~~~~Lk~E 565 (773)
-+++..+|++-...|+.-+- |...+.+++..-|-.-...++..+|+..|..|-.. +++-+...-.+-+.++++
T Consensus 68 neev~elK~kR~ein~kl~e----L~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~- 142 (294)
T COG1340 68 NEEVQELKEKRDEINAKLQE----LRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKE- 142 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-
Confidence 34566666666655554332 66666666654442224566777888777665432 222222222333333333
Q ss_pred HHHHhHHhhcCcchHHHHHHHHHHHh
Q 004120 566 INKKFEEVICRPDIKEKMEAIKAKLQ 591 (773)
Q Consensus 566 i~~~~~ea~~~~~lkek~~~lk~E~~ 591 (773)
+-+++.-+=++....+++..|++|+.
T Consensus 143 L~k~le~~~k~~e~~~~~~el~aei~ 168 (294)
T COG1340 143 LRKELEDAKKALEENEKLKELKAEID 168 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666666666554
No 215
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=73.58 E-value=1.7e+02 Score=38.28 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHH
Q 004120 704 EQQIKQRLSEAVNSSELKEKHEELMAEI 731 (773)
Q Consensus 704 ~~~I~~~ie~a~~ss~lk~k~E~Lk~e~ 731 (773)
++|++.-+..+-+.-+..+|.++|-.++
T Consensus 699 e~~~~e~~~~lseek~ar~k~e~~~~~i 726 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAREKAENLLLEI 726 (1317)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 3444443444444444666666665555
No 216
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=72.18 E-value=1.7e+02 Score=32.61 Aligned_cols=109 Identities=23% Similarity=0.306 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHh
Q 004120 555 SKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVV 634 (773)
Q Consensus 555 ~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l 634 (773)
+..+...|.+|.++-..|--++...++||+.|=-|+++. +..|++...+..+|=+..=...-..+...|.-+
T Consensus 48 ~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~--------Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dI 119 (309)
T PF09728_consen 48 LQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQ--------NKKLKEESKRRAREEEEKRKELSEKFQATLKDI 119 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556688888888888889999999999999999988 566666655444443322222222222222222
Q ss_pred hhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHH
Q 004120 635 KSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDM 677 (773)
Q Consensus 635 ~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~k 677 (773)
..+.....+.+ .+...-|.++..|++.+++.-++++.
T Consensus 120 q~~~ee~~~~~------~k~~~eN~~L~eKlK~l~eQye~rE~ 156 (309)
T PF09728_consen 120 QAQMEEQSERN------IKLREENEELREKLKSLIEQYELREE 156 (309)
T ss_pred HHHHHhccchh------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222 24556677777777777776665543
No 217
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=71.59 E-value=3.7e+02 Score=36.85 Aligned_cols=67 Identities=33% Similarity=0.368 Sum_probs=39.2
Q ss_pred ChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHH---------------hHHHHHHHHHcCcHHHHHHHHHH
Q 004120 433 SKEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEV---------------DHEFSEAAKAMGMQEKFATLRAE 497 (773)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~ 497 (773)
...-++.||++||+.=.--+.+ ..-|..=.++|-+|+ .+|-+++..---++.++..|..+
T Consensus 739 k~~~le~ev~~LKqE~~ll~~t-----~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~e 813 (1822)
T KOG4674|consen 739 KLEKLEAELSNLKQEKLLLKET-----EERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERE 813 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999998864333221 111222222222222 13556666667778888888888
Q ss_pred hccCCCC
Q 004120 498 FSKGNSR 504 (773)
Q Consensus 498 ~~~~~~~ 504 (773)
+++++..
T Consensus 814 l~~lk~k 820 (1822)
T KOG4674|consen 814 LQKLKKK 820 (1822)
T ss_pred HHHHHHH
Confidence 8887665
No 218
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=71.50 E-value=61 Score=32.81 Aligned_cols=108 Identities=24% Similarity=0.320 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHc-------------CcHHHHHHHHHHhccCCCC-CCCCChHHHHHHHHHHHHHhhccC
Q 004120 463 LNVMIQKLKKEVDHEFSEAAKAM-------------GMQEKFATLRAEFSKGNSR-DQLMDPILMDKITELKNEFNQGLA 528 (773)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 528 (773)
-+.-|.+.|.|++.|+..|-.++ -|..++..+..-+-+-|.+ +.-.+ -|. +-.+.-++|-...-
T Consensus 12 ~D~~IqqaK~~L~~ei~kA~q~~~snnt~~mqsa~~sL~~Ki~ei~~kL~~Fn~dKea~F~-eLq-~tr~~I~eFi~~~K 89 (157)
T PF04778_consen 12 NDNEIQQAKTELDKEIQKANQAVASNNTASMQSAKSSLDAKITEITKKLEKFNKDKEAKFN-ELQ-QTRKQIDEFINKNK 89 (157)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHH-HHHHHHHHHHhhcc
Confidence 45678888999999988887776 3445555555555554443 21111 111 11223358877789
Q ss_pred CCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHH
Q 004120 529 SAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEE 572 (773)
Q Consensus 529 ~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~e 572 (773)
.-|||..|=++|.-.+..-.-...+--.+.|..--+++++-+.+
T Consensus 90 ~NpnY~~li~~Lt~~kd~k~sVt~SSNKSdI~aAN~~L~qAL~~ 133 (157)
T PF04778_consen 90 NNPNYAELIKKLTQKKDSKNSVTESSNKSDIEAANQELKQALNK 133 (157)
T ss_pred CCccHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHH
Confidence 99999998888877776655555544445565544444444443
No 219
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=71.43 E-value=2.2e+02 Score=33.76 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHHHHHh
Q 004120 435 EKLEDEVEKLKQQILKA 451 (773)
Q Consensus 435 ~~~~~~~~~~~~~~~~~ 451 (773)
.+|-.||..||.-+..+
T Consensus 175 e~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 175 EELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 220
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=71.27 E-value=1.3e+02 Score=36.22 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHhhc
Q 004120 698 CKIQALEQQIKQRLSEAVNSSELKEKHEELMAEISDA 734 (773)
Q Consensus 698 ~KIe~l~~~I~~~ie~a~~ss~lk~k~E~Lk~e~a~a 734 (773)
...+.|.+|++.- ++-+.+| ..+.+.|..|++.+
T Consensus 283 ~e~e~LkeqLr~~-qe~lqaS--qq~~~~L~~EL~~~ 316 (546)
T PF07888_consen 283 QENEALKEQLRSA-QEQLQAS--QQEAELLRKELSDA 316 (546)
T ss_pred HHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHH
Confidence 3345566655542 2333333 46777788887555
No 221
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=70.79 E-value=1.1e+02 Score=37.23 Aligned_cols=175 Identities=21% Similarity=0.257 Sum_probs=99.9
Q ss_pred CChhhHHHHHHHhhhhcccc--ccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHH
Q 004120 531 PNYASLKYKLDMLKEFSNAK--SLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEK 608 (773)
Q Consensus 531 ~n~~~Lk~ki~~~ke~s~~~--~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkek 608 (773)
-+.+.|++|+-..+++.+.. +..+...+...-|.-++++++ ++++-==.++..|..+. .++-+.|...|+.|
T Consensus 256 ~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~-----~di~~~~~S~~~e~e~~-~~qI~~le~~l~~~ 329 (629)
T KOG0963|consen 256 REVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLS-----NDIERLEASLVEEREKH-KAQISALEKELKAK 329 (629)
T ss_pred HHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 35678999999999888877 556655555545666666666 34333334444444444 44555666777766
Q ss_pred HHHHHHHHHHHHHHH--HhhcCcchHHhhhHHHHhh--hccccc-hhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 004120 609 LVETKKEIESELIDG--LESLGLDVEVVKSKAKELS--EQTSFS-NFRSKMENLNEEINKKIEDVINSSDLKDMIELLKL 683 (773)
Q Consensus 609 i~k~k~Ef~~~l~~~--~~sl~~~~~~l~sk~k~~~--~~~~~~-~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~ 683 (773)
+..+. |....|-.- |.-++.+|.+|+ +.+.. +.+... +-....+.|=-+=|+++.. |.-.+
T Consensus 330 ~~~le-el~~kL~~~sDYeeIK~ELsiLk--~ief~~se~a~~~~~~~~~leslLl~knr~lq~-----------e~a~L 395 (629)
T KOG0963|consen 330 ISELE-ELKEKLNSRSDYEEIKKELSILK--AIEFGDSEEANDEDETAKTLESLLLEKNRKLQN-----------ENASL 395 (629)
T ss_pred HHHHH-HHHHHHhhhccHHHHHHHHHHHH--HhhcCCcccccccccccchHHHHHHHHHhhhhH-----------HHHHH
Confidence 54332 333333332 888888888887 44443 222211 3335566666666777664 34455
Q ss_pred HHHhhCCCCC-hhhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHhhcc
Q 004120 684 EIAKAGKKPD-VKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEISDAT 735 (773)
Q Consensus 684 Evakag~~p~-~~~k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~Lk~e~a~a~ 735 (773)
.|+.+|.++- .+.+.|++.+.+++ ++.|+-+..|.--+.+--
T Consensus 396 r~~n~~~~~~~~~~~~~~~el~~~~----------~~~ke~i~klE~dl~~~~ 438 (629)
T KOG0963|consen 396 RVANSGLSGRITELSKKGEELEAKA----------TEQKELIAKLEQDLLKVQ 438 (629)
T ss_pred hccccccchhHHHHHhhhhhhHHHH----------HHHHHHHHHHHhhHhhcc
Confidence 5666776662 23355666666554 335555555555554443
No 222
>PRK04863 mukB cell division protein MukB; Provisional
Probab=69.94 E-value=1.2e+02 Score=40.69 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=38.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Q 004120 649 NFRSKMENLNEEINKKIEDVINSSD-LKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEEL 727 (773)
Q Consensus 649 ~~~~k~~~l~~ei~kkie~~~~~~~-ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~L 727 (773)
+|..+++++.++++..=.+..+... ++.-=+.+..=+.-.|..|.....+.-.++-.+-.+.=.-|.+.+.|..++-.|
T Consensus 446 nF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 525 (1486)
T PRK04863 446 EFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSEL 525 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 5555555555555554443322222 211122333333445666666666554444444444444455555555555555
Q ss_pred HH
Q 004120 728 MA 729 (773)
Q Consensus 728 k~ 729 (773)
+.
T Consensus 526 ~~ 527 (1486)
T PRK04863 526 EQ 527 (1486)
T ss_pred HH
Confidence 54
No 223
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=69.65 E-value=2.4e+02 Score=36.30 Aligned_cols=183 Identities=20% Similarity=0.258 Sum_probs=114.6
Q ss_pred HHHhHHHHHHHHHcC-cHHHHHHHHHHhccCCCCCCCCC---hHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhc
Q 004120 472 KEVDHEFSEAAKAMG-MQEKFATLRAEFSKGNSRDQLMD---PILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFS 547 (773)
Q Consensus 472 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s 547 (773)
++.|+||-+--.+++ +.+-+..+.+++..-++.-..|- -.+..++.+...+||..+ .+++++.+++++.-
T Consensus 244 ~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~------~k~~~~~ek~~~~~ 317 (1072)
T KOG0979|consen 244 KKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEAL------AKVQEKFEKLKEIE 317 (1072)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 466778877666664 45556666666655544422222 345667888888888754 57777887777655
Q ss_pred cccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 004120 548 NAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESL 627 (773)
Q Consensus 548 ~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl 627 (773)
... ..+....+.||..=++.-.++-+ .++-+..+++|++.+ ...+.+.+++..++.|..+.=...+.+.
T Consensus 318 ~~v--~~~~~~le~lk~~~~~rq~~i~~---~~k~i~~~q~el~~~------~~~e~~~~~~~ei~~~~~~~~~~~~~~~ 386 (1072)
T KOG0979|consen 318 DEV--EEKKNKLESLKKAAEKRQKRIEK---AKKMILDAQAELQET------EDPENPVEEDQEIMKEVLQKKSSKLRDS 386 (1072)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhc------CCccccchhHHHHHHHHHHHHhhhhhhh
Confidence 322 22334455566666666665543 456677788888766 4455677788888888777777778888
Q ss_pred CcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhH
Q 004120 628 GLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLK 675 (773)
Q Consensus 628 ~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik 675 (773)
.-+.+.-+.+...+.+. .+.+.+...-....++| ...+-+++..
T Consensus 387 ~~~id~~~~~~~~~~~l---~~~kr~~~~~~~~~~~k-~~~~l~~~~~ 430 (1072)
T KOG0979|consen 387 RQEIDAEQLKSQKLRDL---ENKKRKLKQNSDLNRQK-RYRVLRQGSS 430 (1072)
T ss_pred hhhhhHHHHHHHHHHHH---HHHHHHHHHHhhhhhhh-HHHHhccCch
Confidence 88888777566555542 24555666666666766 3334444333
No 224
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=68.95 E-value=35 Score=36.84 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 004120 435 EKLEDEVEKLKQQILKAK 452 (773)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~ 452 (773)
.-.+.|+..|+++|-.+.
T Consensus 50 ~~ye~el~~lr~~id~~~ 67 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLS 67 (312)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHH
Confidence 345666666666665443
No 225
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=68.60 E-value=1.8e+02 Score=37.86 Aligned_cols=97 Identities=27% Similarity=0.304 Sum_probs=60.6
Q ss_pred hhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhc---cch-hHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHH
Q 004120 635 KSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVIN---SSD-LKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQR 710 (773)
Q Consensus 635 ~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~---~~~-ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ 710 (773)
+++|+..-+++. ...+++++-++|+.+-|+.|=| .++ =-+.||.|-.||-.-..+.. -+-|+.|-.+|+..
T Consensus 1449 ~~~Aq~~~~~a~--as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~t---peqi~~L~~~I~e~ 1523 (1758)
T KOG0994|consen 1449 QQSAQRALEQAN--ASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLT---PEQIQQLTGEIQER 1523 (1758)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHH
Confidence 366666666654 6677888888887777766644 221 12334444444444333222 34688999999998
Q ss_pred HHHHhCChhh-------HHHHHHHHHHHhhccC
Q 004120 711 LSEAVNSSEL-------KEKHEELMAEISDATK 736 (773)
Q Consensus 711 ie~a~~ss~l-------k~k~E~Lk~e~a~a~~ 736 (773)
++.+-|...| +...|+|..|.-+|.+
T Consensus 1524 v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~ 1556 (1758)
T KOG0994|consen 1524 VASLPNVDAILSRTKGDIARAENLQSEAERARS 1556 (1758)
T ss_pred HHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 8888777664 3456778777755543
No 226
>PF06626 DUF1152: Protein of unknown function (DUF1152); InterPro: IPR010581 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=67.76 E-value=14 Score=40.92 Aligned_cols=70 Identities=31% Similarity=0.403 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHH-hchHHHHHHHHHHHhCCCCcEEEEEcCCCccch
Q 004120 224 TPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEE-LGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGG 295 (773)
Q Consensus 224 ~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe-~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGG 295 (773)
|+.+.+++.+ .+++++++=.|.+||.+|=-+..+.|. .|---+=+-+++++..++.|++-.|+|.|.=|+
T Consensus 101 Gv~~l~~al~--~l~~~~~iD~Ii~VDvGgDvLa~G~E~~L~SPlaDa~sLAal~~l~~~~~l~v~G~G~Dge 171 (297)
T PF06626_consen 101 GVQGLARALR--ELAEKLGIDAIILVDVGGDVLARGDEPGLGSPLADAISLAALAKLEEPVILAVIGFGVDGE 171 (297)
T ss_pred CcHHHHHHHH--HHHHHcCCCEEEEEecCCceEeecCccccCChHHHHHHHHHHHhcCCceEEEEEeCCcCCC
Confidence 4667777666 789999999999999999766666665 355556778888999998999999999986663
No 227
>PF15294 Leu_zip: Leucine zipper
Probab=66.58 E-value=1.3e+02 Score=33.18 Aligned_cols=217 Identities=23% Similarity=0.306 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhc--cC-CCCCCCCChH
Q 004120 436 KLEDEVEKLKQQILKAKESST-KPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFS--KG-NSRDQLMDPI 511 (773)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~ 511 (773)
+++.....||.-+|.- +++| ......++..---++.||+.|.-++....-|-=|-.--.+|=. +- .+-..+-|..
T Consensus 12 ~Vds~F~Dlk~srL~e-~t~T~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~~diselEn~e 90 (278)
T PF15294_consen 12 EVDSCFQDLKSSRLRE-DTYTSDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQTDISELENRE 90 (278)
T ss_pred HHHHhhhHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 5566678888888884 5554 2333345555555677888888777655433222211111111 11 1124456677
Q ss_pred HHHHHHHH-HHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHH
Q 004120 512 LMDKITEL-KNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKL 590 (773)
Q Consensus 512 ~~~~~~~~-~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~ 590 (773)
|.+.|++. +.+|-.+- .|+...-+.||.-+++.... --++.+|.+|+.|-++ +++|+..+....
T Consensus 91 LLe~i~~~E~~~~~~~~--~~~~~~~~~KL~pl~e~g~~---~ll~kEi~rLq~EN~k----------Lk~rl~~le~~a 155 (278)
T PF15294_consen 91 LLEQIAEFEKQEFTSSF--KPNQETSKPKLEPLNESGGS---ELLNKEIDRLQEENEK----------LKERLKSLEKQA 155 (278)
T ss_pred HHHHHHHHHHhhhcccC--CccccccccccccccccchH---HHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 77777754 23343332 56677777788888776322 1267788899888654 677887777766
Q ss_pred hhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhc
Q 004120 591 QDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVIN 670 (773)
Q Consensus 591 ~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~ 670 (773)
..+ +.|| ..++ ..++.|.+...-.+.+...........++.+++..++.++.+-+.+--.
T Consensus 156 t~~-----------l~Ek-----~kl~----~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~ 215 (278)
T PF15294_consen 156 TSA-----------LDEK-----SKLE----AQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKES 215 (278)
T ss_pred HHH-----------HHHH-----HHHH----HHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 554 2221 1222 2233333311111111111222233447788999999888887765543
Q ss_pred cc-hhHHHHHHHHHHHHhh
Q 004120 671 SS-DLKDMIELLKLEIAKA 688 (773)
Q Consensus 671 ~~-~ik~kiE~LK~Evaka 688 (773)
+- .|++.+-.-|.||-+.
T Consensus 216 ~~k~L~e~L~~~KhelL~~ 234 (278)
T PF15294_consen 216 QQKALEETLQSCKHELLRV 234 (278)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 22 3666666666665544
No 228
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=65.69 E-value=2.6e+02 Score=33.34 Aligned_cols=62 Identities=15% Similarity=0.271 Sum_probs=27.0
Q ss_pred ChhhHHHHHHHhhhhccc--cccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhc
Q 004120 532 NYASLKYKLDMLKEFSNA--KSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDS 593 (773)
Q Consensus 532 n~~~Lk~ki~~~ke~s~~--~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka 593 (773)
.+..+...+..++...+. .+..++.+..+++++|++.=-..--.--.++++++.++.++.+.
T Consensus 302 ~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 302 RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKA 365 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554443332 23344444455555555531111112233445555555555433
No 229
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=64.93 E-value=3.1e+02 Score=35.49 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=11.9
Q ss_pred chhHHHHHHHHHHHHhh
Q 004120 672 SDLKDMIELLKLEIAKA 688 (773)
Q Consensus 672 ~~ik~kiE~LK~Evaka 688 (773)
+++-+|++.|+.||.+.
T Consensus 397 ~e~e~k~~~L~~evek~ 413 (1074)
T KOG0250|consen 397 EERENKLEQLKKEVEKL 413 (1074)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777777777754
No 230
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=64.87 E-value=36 Score=34.14 Aligned_cols=93 Identities=20% Similarity=0.352 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhccC-CCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhh
Q 004120 514 DKITELKNEFNQGLA-SAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQD 592 (773)
Q Consensus 514 ~~~~~~~~~~~~~~~-~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k 592 (773)
+.|+++|.+....+- .--.|..++.++..++ .-+.+.++.|+.||. .+++.-+|+.+++.|+.+...
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k-----~ql~~~d~~i~~Lk~-------~~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLK-----TQLKEADKQIKDLKK-------SAKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh-------ccCCHHHHHHHHHHHHHHHHH
Confidence 467777777766653 2223344444444443 123345666777776 467777888888888887765
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004120 593 SGASSFSDLEDDLKEKLVETKKEIESELIDGLESLG 628 (773)
Q Consensus 593 a~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~ 628 (773)
+ ......++..++.. .-|..++.+.|
T Consensus 70 ~--------~~~~e~~l~~~~~~--~ai~~al~~ak 95 (155)
T PF06810_consen 70 A--------KEEYEAKLAQMKKD--SAIKSALKGAK 95 (155)
T ss_pred H--------HHHHHHHHHHHHHH--HHHHHHHHHcC
Confidence 4 33445555555543 33444444433
No 231
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=62.73 E-value=2.5 Score=51.31 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccC
Q 004120 463 LNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKG 501 (773)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (773)
+..-|.+|+++++.=...|-.+-.|.|-+..+|+.-.++
T Consensus 272 le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~ 310 (713)
T PF05622_consen 272 LEKEIDELRQENEELQAEAREARALRDELDELREKADRA 310 (713)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445678888888888888888889999988888876665
No 232
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=62.21 E-value=2.3e+02 Score=30.64 Aligned_cols=131 Identities=18% Similarity=0.345 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhh
Q 004120 556 KNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVK 635 (773)
Q Consensus 556 ~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~ 635 (773)
+.....+-..+-.++.+.++.+..++++..+=.++...-... .....+-+++...-..+ +..+.-+.+
T Consensus 137 ~~~~~~l~~~il~~i~~~l~~~e~~~~I~~~i~~~~~~~~~~--~~~~~l~~~i~~~l~~~-------l~~l~~~~~--- 204 (367)
T PF04286_consen 137 EEQHQKLLDRILEKIKEYLKSEETRERIRDLIEEFLEEYLGK--SFLDKLAEKIQDELDSL-------LEKLQEDPD--- 204 (367)
T ss_pred ccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHH-------HHHHHhCcc---
Confidence 444566777888888888999998888877776665542111 11222222222111111 111100000
Q ss_pred hHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHh
Q 004120 636 SKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAV 715 (773)
Q Consensus 636 sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~ 715 (773)
..++ ..+.+.+.+.+.++.++|.+.++++.++...-. +......++.+-+.+...|.+-+
T Consensus 205 ------------~~lr---~~~~~~l~~~i~~L~~d~~~~~~i~~~~~~~l~-----~~~~~~~~~~l~~~l~~~i~~~l 264 (367)
T PF04286_consen 205 ------------HPLR---QEIDQKLRELIERLLTDPELREKIEELKDKLLS-----ELILEEFLEELWDSLREWIKEDL 264 (367)
T ss_pred ------------cHhH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHhh
Confidence 0111 225555666777777788888888888764432 22234455556666666666666
Q ss_pred CCh
Q 004120 716 NSS 718 (773)
Q Consensus 716 ~ss 718 (773)
+.+
T Consensus 265 ~~~ 267 (367)
T PF04286_consen 265 SRE 267 (367)
T ss_pred cch
Confidence 653
No 233
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=62.13 E-value=23 Score=35.68 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=19.8
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Q 004120 679 ELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEI 731 (773)
Q Consensus 679 E~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~Lk~e~ 731 (773)
.-|=.|+.+.+. +.+...+..++.|...|..+++. .-.-.++|..++
T Consensus 102 q~l~~E~qk~~k----~v~~~~~~~~e~l~~~~K~~~D~--~~k~~~~~~~~l 148 (155)
T PF07464_consen 102 QSLVQESQKLAK----EVSENSEGANEKLQPAIKQAYDD--AVKAAQKVQKQL 148 (155)
T ss_dssp HHHHHHHHHHHH----HHHS---SS-GGGHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 445555555555 33444444444444444444443 333344444444
No 234
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.01 E-value=1.1e+02 Score=32.14 Aligned_cols=19 Identities=5% Similarity=0.399 Sum_probs=12.2
Q ss_pred cCcchHHHHHHHHHHHhhc
Q 004120 575 CRPDIKEKMEAIKAKLQDS 593 (773)
Q Consensus 575 ~~~~lkek~~~lk~E~~ka 593 (773)
..|.+++++.+|+.|+++.
T Consensus 87 ~~p~~~~rlp~le~el~~l 105 (206)
T PRK10884 87 TTPSLRTRVPDLENQVKTL 105 (206)
T ss_pred CCccHHHHHHHHHHHHHHH
Confidence 4566777777777766643
No 235
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=58.54 E-value=3.8e+02 Score=34.64 Aligned_cols=192 Identities=18% Similarity=0.226 Sum_probs=87.2
Q ss_pred CCCCCCCCcccccccccCCCCCCCCChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhHHHHHHHHHcCc
Q 004120 408 QEGIPIDPKKKVNMKKKEGPIASKTSKEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGM 487 (773)
Q Consensus 408 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (773)
.+|.-|||.--.-==. -.++.++-.++.+|++.-.+-.. ...=++.|.+++..=++.+.+--.|
T Consensus 650 l~GDV~dP~GtlTGGs-------~~~~a~~L~~l~~l~~~~~~~~~---------~q~el~~le~eL~~le~~~~kf~~l 713 (1174)
T KOG0933|consen 650 LEGDVYDPSGTLTGGS-------RSKGADLLRQLQKLKQAQKELRA---------IQKELEALERELKSLEAQSQKFRDL 713 (1174)
T ss_pred ecCceeCCCCcccCCC-------CCCcccHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777765432111 13455566677777654332211 2223455666666556666666666
Q ss_pred HHHHHHHHHHhccCC-CCCCCCChHHHHHHHHHHHHHhhccCCCCC-----------hhhHHHHHHHhhhhccccccchh
Q 004120 488 QEKFATLRAEFSKGN-SRDQLMDPILMDKITELKNEFNQGLASAPN-----------YASLKYKLDMLKEFSNAKSLLDS 555 (773)
Q Consensus 488 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-----------~~~Lk~ki~~~ke~s~~~~~~~~ 555 (773)
+.-|...-.+++-.- .-+|.-+--+.+.++++.++....=+.-++ +..|-+++...+ ..+...+.|+
T Consensus 714 ~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~-~~re~rlkdl 792 (1174)
T KOG0933|consen 714 KQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAK-ANRERRLKDL 792 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHhHHHHH
Confidence 666666665655441 113333333444555555543321111111 111111111111 1122333344
Q ss_pred HHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004120 556 KNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIE 617 (773)
Q Consensus 556 ~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~ 617 (773)
.+.|+++|+.++..=++-=++-...+++..=-+|+.++ -++..-....+...|..++.|+.
T Consensus 793 ~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e-~~~~k~~l~~~~~~~~~l~~e~~ 853 (1174)
T KOG0933|consen 793 EKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKE-ISSLKQQLEQLEKQISSLKSELG 853 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444444444444444444444444 22333444455666666666543
No 236
>PRK04863 mukB cell division protein MukB; Provisional
Probab=58.25 E-value=4.9e+02 Score=35.16 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccch
Q 004120 512 LMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLD 554 (773)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~ 554 (773)
|+.++..+..+....=...-.|....+.+..+++.+..+++++
T Consensus 395 LqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~Sd 437 (1486)
T PRK04863 395 LKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTA 437 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 3444444444444444445567888888888998887665554
No 237
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.43 E-value=4.3e+02 Score=32.11 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=36.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhccCCCCChhhHHHHH----HHhhhhccccccchhHHHHHHHH---HHHHHHhHHhh
Q 004120 502 NSRDQLMDPILMDKITELKNEFNQGLASAPNYASLKYKL----DMLKEFSNAKSLLDSKNKAAKLK---QEINKKFEEVI 574 (773)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki----~~~ke~s~~~~~~~~~~~~~~Lk---~Ei~~~~~ea~ 574 (773)
++++..||-++ ++-.-+.|..-+..++||..+-+++ .+.... .+..|+.|+ .++...|.++.
T Consensus 187 ~~ed~~m~k~f---~dy~~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~--------i~~~ie~l~~~n~~l~e~i~e~e 255 (581)
T KOG0995|consen 187 EAEDKTMNKLF---FDYTIRSYTSFLKGEDNSSELEDELKHRLEKYFTS--------IANEIEDLKKTNRELEEMINERE 255 (581)
T ss_pred chHHHHHHHHH---HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666333 3444567888888899887655443 333221 123333333 45566666777
Q ss_pred cCcc
Q 004120 575 CRPD 578 (773)
Q Consensus 575 ~~~~ 578 (773)
+-+|
T Consensus 256 k~~~ 259 (581)
T KOG0995|consen 256 KDPG 259 (581)
T ss_pred cCcc
Confidence 7666
No 238
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=57.33 E-value=1.3e+02 Score=33.27 Aligned_cols=81 Identities=23% Similarity=0.448 Sum_probs=39.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhccch--hHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Q 004120 650 FRSKMENLNEEINKKIEDVINSSD--LKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEEL 727 (773)
Q Consensus 650 ~~~k~~~l~~ei~kkie~~~~~~~--ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~L 727 (773)
+..+-..|+.|+.. ++.+...++ =+++++.||.|++..... -...+.+++.|+++....=+.+ ..++++...|
T Consensus 182 l~~~~~~L~~e~~~-Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~-i~~~k~~l~el~~el~~l~~~i---~~~~~~k~~l 256 (325)
T PF08317_consen 182 LRERKAELEEELEN-LKQLVEEIESCDQEELEALRQELAEQKEE-IEAKKKELAELQEELEELEEKI---EELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhhhhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 33444445554442 233333222 235556666666543330 1122445556666554433332 4566777777
Q ss_pred HHHHhhcc
Q 004120 728 MAEISDAT 735 (773)
Q Consensus 728 k~e~a~a~ 735 (773)
..+|+.+.
T Consensus 257 ~~eI~e~~ 264 (325)
T PF08317_consen 257 LAEIAEAE 264 (325)
T ss_pred HHHHHHHH
Confidence 77776654
No 239
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=56.89 E-value=58 Score=39.77 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=27.9
Q ss_pred CCCCChH---HHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHH
Q 004120 598 FSDLEDD---LKEKLVETKKEIESELIDGLESLGLDVEVVKSKA 638 (773)
Q Consensus 598 ~~~l~~~---Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~ 638 (773)
..+-||. ++..|..++..+++++.....++...++.+..+.
T Consensus 311 y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~ 354 (754)
T TIGR01005 311 MLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARE 354 (754)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554 5668888888888888887777776666555333
No 240
>PRK09039 hypothetical protein; Validated
Probab=56.39 E-value=1.9e+02 Score=32.50 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhc
Q 004120 514 DKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDS 593 (773)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka 593 (773)
.++...+.++.. ..|.+..|++||.-|+.- +..|..+|+-- |.-. -+.+.+++.|+.++..+
T Consensus 123 ~~L~~~k~~~se---~~~~V~~L~~qI~aLr~Q------------la~le~~L~~a--e~~~-~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 123 QELDSEKQVSAR---ALAQVELLNQQIAALRRQ------------LAALEAALDAS--EKRD-RESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHH---hhHHHHHHHHHHHHHHHH------------HHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHH
Confidence 344444444432 356677777777777643 22233333211 1111 35566666666666655
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004120 594 GASSFSDLEDDLKEKLVETKKEIESELIDGLES 626 (773)
Q Consensus 594 ~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~s 626 (773)
-+. -...+.+++.+|--+|..++..
T Consensus 185 ~~~--------~~~~l~~~~~~~~~~l~~~~~~ 209 (343)
T PRK09039 185 LAQ--------RVQELNRYRSEFFGRLREILGD 209 (343)
T ss_pred HHH--------HHHHHHHhHHHHHHHHHHHhCC
Confidence 100 2335567777877777666443
No 241
>PRK09039 hypothetical protein; Validated
Probab=55.84 E-value=1.1e+02 Score=34.36 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=22.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHH-HhCChhhHHHH
Q 004120 693 DVKSKCKIQALEQQIKQRLSE-AVNSSELKEKH 724 (773)
Q Consensus 693 ~~~~k~KIe~l~~~I~~~ie~-a~~ss~lk~k~ 724 (773)
+.+.+.+|+.|.+.|+.-|++ +-+-..+++.|
T Consensus 167 ~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 167 DRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 367788899999998888877 43444455555
No 242
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=55.66 E-value=1.4e+02 Score=33.60 Aligned_cols=76 Identities=25% Similarity=0.270 Sum_probs=51.1
Q ss_pred HHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHH
Q 004120 584 EAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINK 663 (773)
Q Consensus 584 ~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~k 663 (773)
++||++...++-.......+++++-|+.+-.+++.....+-..|...++-.. .....+ ++++..|.+.|++
T Consensus 63 ~~lk~~Ye~~~k~~~~~~E~d~~~~l~~~v~d~~rri~~~kerL~e~~ee~~---~e~~~k------~~~v~~l~e~I~~ 133 (319)
T KOG0796|consen 63 EALKADYERASKERDYGYEWDALEILERFVADVDRRIEKAKERLAETVEERS---EEAARK------AEKVHELEEKIGK 133 (319)
T ss_pred HHHHHHHhhchHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---hHHHHH------HHHHHHHHHHHHH
Confidence 6777877777666677788889999999999999987777666655544111 111110 3467777777777
Q ss_pred HHHHh
Q 004120 664 KIEDV 668 (773)
Q Consensus 664 kie~~ 668 (773)
.++++
T Consensus 134 ~l~~~ 138 (319)
T KOG0796|consen 134 LLEKA 138 (319)
T ss_pred HHHHH
Confidence 77643
No 243
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=54.91 E-value=5.9e+02 Score=33.00 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=15.3
Q ss_pred HHHHHHhCChh-hHHHHHHHHHHHhhc
Q 004120 709 QRLSEAVNSSE-LKEKHEELMAEISDA 734 (773)
Q Consensus 709 ~~ie~a~~ss~-lk~k~E~Lk~e~a~a 734 (773)
+++|..++--. |..|-|++..-|-.-
T Consensus 909 Ke~Ek~~~rk~~Ll~KreE~~ekIr~l 935 (1200)
T KOG0964|consen 909 KELEKLVRRKHMLLKKREECCEKIREL 935 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55666655444 666777666666443
No 244
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=54.01 E-value=5.5e+02 Score=32.35 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=6.1
Q ss_pred ECCeEEEEEEee
Q 004120 196 MDGRTYMFMGHQ 207 (773)
Q Consensus 196 I~GrpV~VIa~d 207 (773)
|.+.-.+|+|.+
T Consensus 21 f~~~~~~i~G~N 32 (1179)
T TIGR02168 21 FDKGITGIVGPN 32 (1179)
T ss_pred ecCCcEEEECCC
Confidence 334455566555
No 245
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=53.66 E-value=2.6e+02 Score=28.50 Aligned_cols=124 Identities=22% Similarity=0.327 Sum_probs=81.0
Q ss_pred ccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCCh---HHHHHHHHHHHHHHHHHHHHHhhc
Q 004120 551 SLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLED---DLKEKLVETKKEIESELIDGLESL 627 (773)
Q Consensus 551 ~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~---~Lkeki~k~k~Ef~~~l~~~~~sl 627 (773)
.+-|.+..|-+.|.|+++|+..|-.+.--.. -++++.+ ...|+- +...|+++|+++=+
T Consensus 8 kL~D~D~~IqqaK~~L~~ei~kA~q~~~snn-----t~~mqsa----~~sL~~Ki~ei~~kL~~Fn~dKe---------- 68 (157)
T PF04778_consen 8 KLTDNDNEIQQAKTELDKEIQKANQAVASNN-----TASMQSA----KSSLDAKITEITKKLEKFNKDKE---------- 68 (157)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHhCC-----HHHHHHH----HHHHHHHHHHHHHHHHHHhhhHH----------
Confidence 4567788899999999999987755442111 1112211 111111 22334444443311
Q ss_pred CcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHH
Q 004120 628 GLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQI 707 (773)
Q Consensus 628 ~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I 707 (773)
.. =.+++..+..|.+=|...-++|..-+-|..|...+.+.+.-...-.|+=|++-|+..
T Consensus 69 -------------a~--------F~eLq~tr~~I~eFi~~~K~NpnY~~li~~Lt~~kd~k~sVt~SSNKSdI~aAN~~L 127 (157)
T PF04778_consen 69 -------------AK--------FNELQQTRKQIDEFINKNKNNPNYAELIKKLTQKKDSKNSVTESSNKSDIEAANQEL 127 (157)
T ss_pred -------------HH--------HHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHH
Confidence 11 125566677777778888889999999999999888888866666688899999999
Q ss_pred HHHHHHH
Q 004120 708 KQRLSEA 714 (773)
Q Consensus 708 ~~~ie~a 714 (773)
++-+..|
T Consensus 128 ~qAL~~A 134 (157)
T PF04778_consen 128 KQALNKA 134 (157)
T ss_pred HHHHHHH
Confidence 9988876
No 246
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=53.58 E-value=1.2e+02 Score=34.14 Aligned_cols=99 Identities=26% Similarity=0.414 Sum_probs=56.5
Q ss_pred HHHHHHHHH---HHHHhHHhhcCcc-hHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchH
Q 004120 557 NKAAKLKQE---INKKFEEVICRPD-IKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVE 632 (773)
Q Consensus 557 ~~~~~Lk~E---i~~~~~ea~~~~~-lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~ 632 (773)
+....|+.| +.+++.||-...- |++++...|.+....+.+.+..=-..|...+++++.... .|..++.
T Consensus 79 e~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~--------qLe~d~q 150 (319)
T PF09789_consen 79 EQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIE--------QLERDLQ 150 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 334445555 4567777655433 688888888888777555444333455555555554432 3333333
Q ss_pred Hhh-hHHHHhhhccccchhhhhHHHHHHHHHHHHH
Q 004120 633 VVK-SKAKELSEQTSFSNFRSKMENLNEEINKKIE 666 (773)
Q Consensus 633 ~l~-sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie 666 (773)
.+. -+.....| -..|+.|+..||+|+|--+-
T Consensus 151 s~lDEkeEl~~E---RD~yk~K~~RLN~ELn~~L~ 182 (319)
T PF09789_consen 151 SLLDEKEELVTE---RDAYKCKAHRLNHELNYILN 182 (319)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhC
Confidence 333 11111222 22588999999999987664
No 247
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.44 E-value=99 Score=37.48 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 004120 651 RSKMENLNEEINKKIEDVINSSDLKDMIELLK 682 (773)
Q Consensus 651 ~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK 682 (773)
+++++.|+.++..+=..+ ..|+.+++.|+
T Consensus 480 ~~~I~~L~~~L~e~~~~v---e~L~~~l~~l~ 508 (652)
T COG2433 480 DRRIERLEKELEEKKKRV---EELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 345555555554433322 33444444444
No 248
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=53.21 E-value=2.2e+02 Score=27.51 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=4.5
Q ss_pred HHHHHHHHHhH
Q 004120 561 KLKQEINKKFE 571 (773)
Q Consensus 561 ~Lk~Ei~~~~~ 571 (773)
.+...|..++.
T Consensus 38 ~~~~~l~~~~~ 48 (202)
T PF01442_consen 38 ALSERLESELE 48 (202)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 249
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.07 E-value=3.3e+02 Score=29.43 Aligned_cols=73 Identities=30% Similarity=0.326 Sum_probs=46.9
Q ss_pred HHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhh
Q 004120 564 QEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELS 642 (773)
Q Consensus 564 ~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~ 642 (773)
.|--+.+-..|.+.-.=||=.+.|+ +|+.|-.....+||.-++|. |...-|..+...|...++.+.+.+-.|+
T Consensus 77 ~e~Rk~IE~~MErFK~vEkesKtKa-fSkeGL~~~~k~dp~e~ek~-----e~~~wl~~~Id~L~~QiE~~E~E~E~L~ 149 (233)
T PF04065_consen 77 LENRKLIEEQMERFKVVEKESKTKA-FSKEGLMAASKLDPKEKEKE-----EARDWLKDSIDELNRQIEQLEAEIESLS 149 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-cchhhhhcccccCcchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667778888888888777777 77777666666777665554 4555566666666655655554433333
No 250
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=53.03 E-value=4.5e+02 Score=34.02 Aligned_cols=134 Identities=25% Similarity=0.316 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHH
Q 004120 579 IKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLN 658 (773)
Q Consensus 579 lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~ 658 (773)
+..|++-|.+++..- ..=+-.|-.+|-.|+.= .+ =...|.--...++...-..+..+++ ...++..-+.|.
T Consensus 528 ~~~k~eeLe~~l~~l-----E~ENa~LlkqI~~Lk~t-~q-n~~~LEq~~n~lE~~~~elkk~ida--L~alrrhke~LE 598 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNL-----EEENAHLLKQIQSLKTT-SQ-NGALLEQNNNDLELIHNELKKYIDA--LNALRRHKEKLE 598 (1195)
T ss_pred HHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHH-hH-HHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 455666666655422 22244566777776652 00 1112333333444333344444432 225556667788
Q ss_pred HHH-HHHHHHhhccc-hhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Q 004120 659 EEI-NKKIEDVINSS-DLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEI 731 (773)
Q Consensus 659 ~ei-~kkie~~~~~~-~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~Lk~e~ 731 (773)
.+| |+.+.+ +| ++|.+|+-|+.=+.+. ++.|-+-.+.+-+.-.-+=++++.+++++.+|..+.
T Consensus 599 ~e~mnQql~~---d~~~~kr~ie~Lr~~~~kl-------l~~Kkdr~ree~kel~~ekl~ve~l~e~l~~lp~~f 663 (1195)
T KOG4643|consen 599 EEIMNQQLFE---DPIPLKRDIEWLRRKESKL-------LKEKKDRNREETKELMDEKLQVEDLQEKLRELPLEF 663 (1195)
T ss_pred HHHhhhhhhh---cCCchhhhHHHHHHHHHhh-------cchhHHHHHHHHhhccccchhHHHHHHHHHhCchhh
Confidence 887 766654 36 8999999998843322 244444444444433333367788999999998886
No 251
>PRK11637 AmiB activator; Provisional
Probab=52.94 E-value=4e+02 Score=30.49 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 004120 605 LKEKLVETKKEIESELIDGLES 626 (773)
Q Consensus 605 Lkeki~k~k~Ef~~~l~~~~~s 626 (773)
+.++|.+.++.+...+...|++
T Consensus 115 ~q~~l~~~~~~l~~rlra~Y~~ 136 (428)
T PRK11637 115 LEQQQAAQERLLAAQLDAAFRQ 136 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4677777777788777777774
No 252
>PRK11281 hypothetical protein; Provisional
Probab=52.35 E-value=6.8e+02 Score=32.91 Aligned_cols=129 Identities=14% Similarity=0.195 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhccCCCCCCCCChHHHHHHH------HHHHHHhhc-cCCCCChhhH-HHHHHHhhhhccccccchhHHHH
Q 004120 488 QEKFATLRAEFSKGNSRDQLMDPILMDKIT------ELKNEFNQG-LASAPNYASL-KYKLDMLKEFSNAKSLLDSKNKA 559 (773)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~n~~~L-k~ki~~~ke~s~~~~~~~~~~~~ 559 (773)
..|+..++..+......+.+++|..+.++. +.+.+|++. |..+++.-.| +.|++.++ .....+...+
T Consensus 169 ~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~-----~~~~~~~~~~ 243 (1113)
T PRK11281 169 SQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLT-----ARIQRLEHQL 243 (1113)
T ss_pred HHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 458888888776655556668886554433 344555544 3333333222 22332222 1122244455
Q ss_pred HHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhh
Q 004120 560 AKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVK 635 (773)
Q Consensus 560 ~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~ 635 (773)
+.|+.-||.+--+ +.=..+ +|......+....-||.+++.. +.|+.|+..+...-.+++-+.
T Consensus 244 ~~lq~~in~kr~~--------~se~~~-~~a~~~~~~~~~~~~p~i~~~~-----~~N~~Ls~~L~~~t~~~~~l~ 305 (1113)
T PRK11281 244 QLLQEAINSKRLT--------LSEKTV-QEAQSQDEAARIQANPLVAQEL-----EINLQLSQRLLKATEKLNTLT 305 (1113)
T ss_pred HHHHHHHHHHHHH--------HHHHHH-HHHhhhhhhcccCCChHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 6666666664321 111111 1111111122344467777665 568888888777666666555
No 253
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=52.22 E-value=6.6e+02 Score=32.71 Aligned_cols=248 Identities=21% Similarity=0.319 Sum_probs=136.3
Q ss_pred hhhHHHHHHHHHHHHHhhhcCCCCCc--hHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHH
Q 004120 435 EKLEDEVEKLKQQILKAKESSTKPPD--AALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPIL 512 (773)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (773)
..+..|+++-+..|.+-.++..+... ..+++-|+++....|.|...++++ |++.+..++.+..+..+.-..+.
T Consensus 247 ~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~--L~~~~~~~~~~~tr~~t~l~~~~--- 321 (1174)
T KOG0933|consen 247 KNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKA--LEDKLDSLQNEITREETSLNLKK--- 321 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhh--HHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34566677777777666665543322 346788999999999999998854 78999999998887754311111
Q ss_pred HHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhcccc--ccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHH
Q 004120 513 MDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAK--SLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKL 590 (773)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~--~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~ 590 (773)
+-|...+. +.+.+...|...+..-..+ ......+-.++|++. .++++ .-|+.-+.++
T Consensus 322 -~tl~~e~~----------k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~-~~~~s---------~~~e~~e~~~ 380 (1174)
T KOG0933|consen 322 -ETLNGEEE----------KLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEA-FQEDS---------KLLEKAEELV 380 (1174)
T ss_pred -HHHhhhHH----------HHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHH---------HHHHHHHHHH
Confidence 11111111 1111222222222111111 000000111223322 22333 2233333333
Q ss_pred h--hcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHh
Q 004120 591 Q--DSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDV 668 (773)
Q Consensus 591 ~--ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~ 668 (773)
+ .+|.|++.+=+-.|-+.+...|..|. .++...+-..++++-++-..|.... +..+.-++--+-++++
T Consensus 381 eslt~G~Ss~~~~e~~l~~ql~~aK~~~~-~~~t~~k~a~~k~e~~~~elk~~e~---------e~~t~~~~~~~~~~~l 450 (1174)
T KOG0933|consen 381 ESLTAGLSSNEDEEKTLEDQLRDAKITLS-EASTEIKQAKLKLEHLRKELKLREG---------ELATASAEYVKDIEEL 450 (1174)
T ss_pred HHHhcccccCccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhh---------HhhhhhHHHHHHHHHH
Confidence 3 34677877777788888888888876 3555577777777777722222221 3444444444444433
Q ss_pred hccchhHHHHHHHHHHHHhhCCCCC--hhhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Q 004120 669 INSSDLKDMIELLKLEIAKAGKKPD--VKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEI 731 (773)
Q Consensus 669 ~~~~~ik~kiE~LK~Evakag~~p~--~~~k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~Lk~e~ 731 (773)
--+++-||.|+.....-|..++ ..++++-..|-+.| -.||++.+.|+.-+
T Consensus 451 ---d~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~----------~~lk~~~~~l~a~~ 502 (1174)
T KOG0933|consen 451 ---DALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDI----------GRLKDELDRLLARL 502 (1174)
T ss_pred ---HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhh
Confidence 2377888999998888888664 33344444443333 34888888888877
No 254
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=51.44 E-value=1e+02 Score=36.10 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhcccc
Q 004120 223 PTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCA 302 (773)
Q Consensus 223 ~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~a 302 (773)
-|..+...+.+.++.|++.+-|=|.+|-=+|-. .+.-+.=--+.+++.+ ..+++|+||-|=-+ .
T Consensus 173 QG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS--iEDLW~FNdE~vaRAi---~~s~iPvISAVGHE-----------t 236 (440)
T COG1570 173 QGEGAAEEIVEAIERANQRGDVDVLIVARGGGS--IEDLWAFNDEIVARAI---AASRIPVISAVGHE-----------T 236 (440)
T ss_pred cCCCcHHHHHHHHHHhhccCCCCEEEEecCcch--HHHHhccChHHHHHHH---HhCCCCeEeecccC-----------C
Confidence 345567788999999999885544444434422 2221111123455544 45789999955322 3
Q ss_pred ceeeeecCCeeeeeCHHHHHHHhhhhc
Q 004120 303 NKLLMLENAVFYVASPEACAAILWKSA 329 (773)
Q Consensus 303 D~Vlm~e~A~~sVisPEgaAsIl~rd~ 329 (773)
|+.++=--|-+-.--|-+||.++.++.
T Consensus 237 D~tL~DfVAD~RApTPTaAAE~~vP~~ 263 (440)
T COG1570 237 DFTLADFVADLRAPTPTAAAELVVPDS 263 (440)
T ss_pred CccHHHhhhhccCCCchHHHHHhCCCH
Confidence 444443334455557888888877654
No 255
>PF13166 AAA_13: AAA domain
Probab=51.13 E-value=5.2e+02 Score=31.24 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHH
Q 004120 697 KCKIQALEQQIKQRLSEAVNSSELKEKHEELMA 729 (773)
Q Consensus 697 k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~Lk~ 729 (773)
+..+.+++++|++--....+.....+.|...-.
T Consensus 437 ~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~ 469 (712)
T PF13166_consen 437 KEEIKKIEKEIKELEAQLKNTEPAADRINEELK 469 (712)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 556667777766665666665555554444333
No 256
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=50.49 E-value=1.5e+02 Score=38.66 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=10.5
Q ss_pred cchhHHHHHHHHHHHH
Q 004120 671 SSDLKDMIELLKLEIA 686 (773)
Q Consensus 671 ~~~ik~kiE~LK~Eva 686 (773)
+.++++.+..|+.+|.
T Consensus 618 ~~~~~e~~~~l~~~i~ 633 (1317)
T KOG0612|consen 618 RTEISEIIAELKEEIS 633 (1317)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 3457777777777666
No 257
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=50.20 E-value=1.5e+02 Score=35.21 Aligned_cols=200 Identities=20% Similarity=0.210 Sum_probs=114.3
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhH-----H-hhcCcchHHHHHHHHHH
Q 004120 516 ITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFE-----E-VICRPDIKEKMEAIKAK 589 (773)
Q Consensus 516 ~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~-----e-a~~~~~lkek~~~lk~E 589 (773)
..+|-.-+.++++.-|-..+.++---.+.- ...++. ..++|-+|++--+. | -+.+-|++--++-||-|
T Consensus 511 ~~nLl~h~k~R~~qvpg~~~~a~~~~~~~~-----sa~Ele-eGk~lireltssvk~g~drEV~~~A~~~~~~~eRLkmE 584 (790)
T PF07794_consen 511 LANLLRHIKGRNCQVPGVCNYAQAACYADM-----SAKELE-EGKTLIRELTSSVKAGQDREVSFQAEGIVPGIERLKME 584 (790)
T ss_pred HHHHHHHHhcccccCCchhhHHhhhhhccc-----chhhhh-hhHHHHHhhcccccCCccceeecccccccchhhhhhee
Confidence 567888899999999844443332222221 112222 24556666643221 1 14456777778888887
Q ss_pred HhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhh
Q 004120 590 LQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVI 669 (773)
Q Consensus 590 ~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~ 669 (773)
++ +..+++...-+||-=+.-||. +|+++.++-.++. ..+|.-++|..|++-++.
T Consensus 585 ls-----t~kDlekG~Aeki~~me~Ei~--------glq~DkQ~ar~qI-------------h~Le~~Reelsk~V~DLt 638 (790)
T PF07794_consen 585 LS-----TSKDLEKGYAEKIGFMEMEIG--------GLQADKQTARNQI-------------HRLEQRREELSKRVMDLT 638 (790)
T ss_pred ec-----cccchhhhhHhhhhhhhhhhc--------chhhhHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Confidence 65 668999999999998777765 3333333322222 134556778888888887
Q ss_pred ccch-hHHHHHHHHHHHHhhCCCCChhhHHH----------------HHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHh
Q 004120 670 NSSD-LKDMIELLKLEIAKAGKKPDVKSKCK----------------IQALEQQIKQRLSEAVNSSELKEKHEELMAEIS 732 (773)
Q Consensus 670 ~~~~-ik~kiE~LK~Evakag~~p~~~~k~K----------------Ie~l~~~I~~~ie~a~~ss~lk~k~E~Lk~e~a 732 (773)
.++. -|.-+-.-|.|+|.+=..=....|+| +|+=-.-|+|-.-.+|++...|..+.-+--++-
T Consensus 639 ssaQgakKAVhdaK~ElA~~Y~klLagiKEKwv~KKe~t~le~qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~e 718 (790)
T PF07794_consen 639 SSAQGAKKAVHDAKVELAAAYSKLLAGIKEKWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDLE 718 (790)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHHH
Confidence 7663 66666667777775544333333444 444444566666677777755554433333332
Q ss_pred hccCCCCCCCCCccC
Q 004120 733 DATKSPGGLDGGVNN 747 (773)
Q Consensus 733 ~a~~~~~~~~~s~~~ 747 (773)
.+-++..-+|=+|.+
T Consensus 719 a~ck~keVSDftlSK 733 (790)
T PF07794_consen 719 ARCKSKEVSDFTLSK 733 (790)
T ss_pred hhhhhcccccceecc
Confidence 233334444444443
No 258
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=49.02 E-value=42 Score=30.53 Aligned_cols=39 Identities=21% Similarity=0.474 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 004120 579 IKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELID 622 (773)
Q Consensus 579 lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~ 622 (773)
|++.++.|+.|+. +..++|+..+..+..+.++++..|..
T Consensus 2 L~~~L~~L~~eL~-----~~~~ld~~~~~~L~~l~~dIe~~L~~ 40 (85)
T PF14357_consen 2 LQELLEKLHQELE-----QNPPLDEETRAELSSLDDDIEAQLAE 40 (85)
T ss_pred HHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 6788888888887 44678888888888888888765554
No 259
>PRK11546 zraP zinc resistance protein; Provisional
Probab=48.64 E-value=1.4e+02 Score=30.00 Aligned_cols=72 Identities=10% Similarity=0.131 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHH
Q 004120 651 RSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAE 730 (773)
Q Consensus 651 ~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~Lk~e 730 (773)
+.+++++.++-..+...+ +-.|..|=..|.++.+ +|.++ .+||.+|.+||.+=-. .|-++.-++..|
T Consensus 49 Qa~~q~I~~~f~~~t~~L--RqqL~aKr~ELnALl~----~~~pD-~~kI~aL~kEI~~Lr~------kL~e~r~~~~~~ 115 (143)
T PRK11546 49 QAAWQKIHNDFYAQTSAL--RQQLVSKRYEYNALLT----ANPPD-SSKINAVAKEMENLRQ------SLDELRVKRDIA 115 (143)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 445555555555555433 3345555566666544 44444 5699999998865321 456666677888
Q ss_pred Hhhcc
Q 004120 731 ISDAT 735 (773)
Q Consensus 731 ~a~a~ 735 (773)
++|+|
T Consensus 116 ~~k~G 120 (143)
T PRK11546 116 MAEAG 120 (143)
T ss_pred HHHcC
Confidence 88873
No 260
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=48.25 E-value=5.8e+02 Score=30.93 Aligned_cols=115 Identities=19% Similarity=0.253 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHH-------HHHHHHHHHhhc-------------
Q 004120 611 ETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLN-------EEINKKIEDVIN------------- 670 (773)
Q Consensus 611 k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~-------~ei~kkie~~~~------------- 670 (773)
...++|..+|+.++.-+-...+..-...+.-.+ .-++.||.+++ .++|+.-||++.
T Consensus 238 ~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE----~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~kls 313 (546)
T KOG0977|consen 238 DNREYFKNELALAIREIRAQYEAISRQNRKDIE----SWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLS 313 (546)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhc
Confidence 446677777777766666555544422232222 24566666666 355556666543
Q ss_pred -----cchhHHHHHHHHHHHHhhCC---CCChhhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHh
Q 004120 671 -----SSDLKDMIELLKLEIAKAGK---KPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEIS 732 (773)
Q Consensus 671 -----~~~ik~kiE~LK~Evakag~---~p~~~~k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~Lk~e~a 732 (773)
++.+-..|+-|+.++..--. -+-.+-..-|..+.+|..+-+.+.=.--+.| -.|-.||+
T Consensus 314 elE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~k---i~Ld~EI~ 380 (546)
T KOG0977|consen 314 ELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTK---ISLDAEIA 380 (546)
T ss_pred cccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchH---hHHHhHHH
Confidence 34566677777776542111 1112222337777777776555443322222 24555664
No 261
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=48.15 E-value=2.4e+02 Score=34.96 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHhhCCCC------Chh-hHHHHHHHHHHHHHHHHHHhC
Q 004120 674 LKDMIELLKLEIAKAGKKP------DVK-SKCKIQALEQQIKQRLSEAVN 716 (773)
Q Consensus 674 ik~kiE~LK~Evakag~~p------~~~-~k~KIe~l~~~I~~~ie~a~~ 716 (773)
+|.|++..+.-++ .+.++ -++ -++.|.+.=.|-.++|.++|+
T Consensus 658 lk~k~~~Q~~~i~-~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~ 706 (717)
T PF10168_consen 658 LKKKLDYQQRQIE-SQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVK 706 (717)
T ss_pred HHHHHHHHHHHHh-ccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655555455 33322 111 234455555555566665553
No 262
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=47.12 E-value=18 Score=39.14 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=35.2
Q ss_pred EEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 004120 190 VTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 253 (773)
Q Consensus 190 VtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpG 253 (773)
++|+-.+++.|=+++..|+. +=..++.-|.+.|+|||.++||--
T Consensus 147 lgGIk~m~~~Pd~l~ViDp~--------------------~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 147 LGGIKDMKGLPDVLFVIDPR--------------------KEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred hcchhhccCCCCEEEEeCCc--------------------HhHHHHHHHHHcCCCEEEEecCCC
Confidence 56777788889899999975 222567889999999999999853
No 263
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=47.06 E-value=3.5e+02 Score=32.23 Aligned_cols=65 Identities=20% Similarity=0.394 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhh
Q 004120 558 KAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVK 635 (773)
Q Consensus 558 ~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~ 635 (773)
++++|+.||.++=.|. --|+++...|+.-|.|- ++++.--++...=+.+ |-.-|..+|.+.+-|.
T Consensus 331 ~l~kl~~eie~kEeei---~~L~~~~d~L~~q~~kq------~Is~e~fe~mn~Ere~----L~reL~~i~~~~~~L~ 395 (622)
T COG5185 331 KLEKLKSEIELKEEEI---KALQSNIDELHKQLRKQ------GISTEQFELMNQEREK----LTRELDKINIQSDKLT 395 (622)
T ss_pred HHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHhc------CCCHHHHHHHHHHHHH----HHHHHHHhcchHHHHH
Confidence 3566666666554433 13555555555555443 3444333333322222 3333555666666555
No 264
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=46.50 E-value=54 Score=37.03 Aligned_cols=109 Identities=22% Similarity=0.273 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhccCCCCChhhHH--------------HHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcc
Q 004120 513 MDKITELKNEFNQGLASAPNYASLK--------------YKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPD 578 (773)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~n~~~Lk--------------~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~ 578 (773)
+++|++|.++|.+.|+.+.+...|. ..+..++..+. -.....-+.+.++|++|...|.+......
T Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~l~~~r~~~lgkkg~l~~~~~~l~~l~~-eer~~~G~~~n~~k~~~~~~~~~~~~~l~ 80 (339)
T PRK00488 2 MEDLEELVEEALAAIAAASDLEALEALRVKYLGKKGELTELLKGLGKLPP-EERKEAGALINELKQAIEAALEERKEELE 80 (339)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCchHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666665443332 22222333321 11223345678899999999987766555
Q ss_pred hHHHHHHHHHHHhhc---CC-CCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 004120 579 IKEKMEAIKAKLQDS---GA-SSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDV 631 (773)
Q Consensus 579 lkek~~~lk~E~~ka---~~-s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~ 631 (773)
-++.-+.|..|.-.. +. .....+|| |.++.++ +...+.+||..+
T Consensus 81 ~~~~~~~l~~e~~d~t~p~~~~~~G~~HP-----l~~~~~~----Ir~if~~mGF~e 128 (339)
T PRK00488 81 AAALNARLAAETIDVTLPGRRIELGSLHP-----ITQTIEE----IEDIFVGMGFEV 128 (339)
T ss_pred HHHHHHhhhhccccccCCCCCCCCCCCCH-----HHHHHHH----HHHHHHhCCCEE
Confidence 555445555442222 11 22345555 4445555 345566677654
No 265
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=45.93 E-value=2.1e+02 Score=34.39 Aligned_cols=66 Identities=12% Similarity=0.171 Sum_probs=40.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhc--CcchHHhhhHHHHhhhc--cccch---hhhhHHHHHHHHHHHH
Q 004120 600 DLEDDLKEKLVETKKEIESELIDGLESL--GLDVEVVKSKAKELSEQ--TSFSN---FRSKMENLNEEINKKI 665 (773)
Q Consensus 600 ~l~~~Lkeki~k~k~Ef~~~l~~~~~sl--~~~~~~l~sk~k~~~~~--~~~~~---~~~k~~~l~~ei~kki 665 (773)
.-+...-++|.+.=++..+.....+++| +.+++-++.+++.+..+ +.+.+ ..+++++|+.||....
T Consensus 160 L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~ 232 (555)
T TIGR03545 160 LKTVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADK 232 (555)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666667777777777777 66666677777777765 33332 2345555556664433
No 266
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.84 E-value=1.5e+02 Score=29.50 Aligned_cols=37 Identities=27% Similarity=0.514 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004120 578 DIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIE 617 (773)
Q Consensus 578 ~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~ 617 (773)
.++.....|++|+..- ...+-+.+|.+.|.+++.|..
T Consensus 90 ~l~~~~k~l~~eL~~L---~~~~t~~el~~~i~~l~~e~~ 126 (169)
T PF07106_consen 90 ELKKEVKSLEAELASL---SSEPTNEELREEIEELEEEIE 126 (169)
T ss_pred HHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHH
Confidence 4666777777777755 677888889999998888854
No 267
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=45.38 E-value=2.5e+02 Score=30.68 Aligned_cols=89 Identities=19% Similarity=0.297 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHhhhcC----CcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhc
Q 004120 224 TPHGYRKALRMMYYADHHG----FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAI 299 (773)
Q Consensus 224 ~peg~rKA~R~m~lAekf~----LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~ 299 (773)
|..+...+.+.++.|+..+ .=+|.++=.+|..-.-.+ + --+.+|+.++ .+++|+||-| |.-
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~--F-N~e~varai~---~~~~PvisaI-GHe-------- 117 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWA--F-NDEEVARAIA---ASPIPVISAI-GHE-------- 117 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcc--c-ChHHHHHHHH---hCCCCEEEec-CCC--------
Confidence 3455666777777776654 557888887775422110 0 0134554443 4678988733 221
Q ss_pred cccceeeeecCCeeeeeCHHHHHHHhhhhc
Q 004120 300 GCANKLLMLENAVFYVASPEACAAILWKSA 329 (773)
Q Consensus 300 g~aD~Vlm~e~A~~sVisPEgaAsIl~rd~ 329 (773)
-|+.++=--|.+.+.-|-+||.+++.+.
T Consensus 118 --~D~ti~D~vAd~ra~TPtaaAe~~~~~~ 145 (319)
T PF02601_consen 118 --TDFTIADFVADLRAPTPTAAAELIVPDR 145 (319)
T ss_pred --CCchHHHHHHHhhCCCHHHHHHHHhhhH
Confidence 4555544446667777887777776543
No 268
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=45.36 E-value=1.1e+02 Score=36.75 Aligned_cols=34 Identities=12% Similarity=0.386 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhccCCCC---ChhhHHHHHHHhhh
Q 004120 512 LMDKITELKNEFNQGLASAP---NYASLKYKLDMLKE 545 (773)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~---n~~~Lk~ki~~~ke 545 (773)
++..+++..+.++++....| .+..+|+++..+++
T Consensus 169 ~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 169 IEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK 205 (555)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh
Confidence 34455666677787777776 67778888888876
No 269
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=45.28 E-value=7.6e+02 Score=31.48 Aligned_cols=64 Identities=28% Similarity=0.319 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHhccCCCCCCCCChHHHHH---HHHHHHHHhhccCCCCC-hhhHHHHHHHhhhhcccc
Q 004120 487 MQEKFATLRAEFSKGNSRDQLMDPILMDK---ITELKNEFNQGLASAPN-YASLKYKLDMLKEFSNAK 550 (773)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~n-~~~Lk~ki~~~ke~s~~~ 550 (773)
+..|+..+..|++--..+-+.+.-.|++| |..+..+||+.|+.+.. -..|-+++.+++|-+.++
T Consensus 146 ~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~n 213 (1265)
T KOG0976|consen 146 LNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEK 213 (1265)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45577777777775555555555666655 45566789998886542 234555666666665543
No 270
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=45.28 E-value=7.1e+02 Score=32.31 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHH
Q 004120 555 SKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKL 590 (773)
Q Consensus 555 ~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~ 590 (773)
.+..+..+++|-.+--++.++-...++|++.++.++
T Consensus 669 ~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l 704 (1072)
T KOG0979|consen 669 EQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDL 704 (1072)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344556688888888888887788888888865544
No 271
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=45.05 E-value=99 Score=34.12 Aligned_cols=89 Identities=20% Similarity=0.306 Sum_probs=58.2
Q ss_pred ChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHH
Q 004120 433 SKEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPIL 512 (773)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (773)
..-+|..++++++-|+-.++ .-+..|.+-|++-|.|..+ +..||++| |.+.|..
T Consensus 113 aIq~i~~~~q~~~~~Lnnva-----sdea~L~~Kierrk~ElEr----------~rkRle~L-----------qsiRP~~ 166 (338)
T KOG3647|consen 113 AIQAIQVRLQSSRAQLNNVA-----SDEAALGSKIERRKAELER----------TRKRLEAL-----------QSIRPAH 166 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHH----------HHHHHHHH-----------HhcchHH
Confidence 34556667777766665544 2334566667776666544 34555555 6788999
Q ss_pred HHHHHH----HHHHHhhccCCCCChhhHHHHHHHhhhhc
Q 004120 513 MDKITE----LKNEFNQGLASAPNYASLKYKLDMLKEFS 547 (773)
Q Consensus 513 ~~~~~~----~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s 547 (773)
|+..++ |+.-|..-+-.--|.--||+|++..-.++
T Consensus 167 MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~rse 205 (338)
T KOG3647|consen 167 MDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTRSE 205 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 988765 44446666666778888999998877544
No 272
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=44.82 E-value=52 Score=34.94 Aligned_cols=95 Identities=27% Similarity=0.422 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCC---ChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHH
Q 004120 580 KEKMEAIKAKLQDSGASSFSDL---EDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMEN 656 (773)
Q Consensus 580 kek~~~lk~E~~ka~~s~~~~l---~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~ 656 (773)
+--|.++|.|+..+.-|.+..| ++-||-.|+++|.-+-.++..+.....|++..=+++.++.+. -.+++.+
T Consensus 100 ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~rLdLNLEkgr~~d~~~---~~~l~~~--- 173 (220)
T KOG3156|consen 100 KVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEFRLDLNLEKGRIKDESS---SHDLQIK--- 173 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhceeecchhhccccchhh---hcchhHh---
Confidence 3345566666655544444333 345788888888888888888866666666555666665552 2233333
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 004120 657 LNEEINKKIEDVINSSDLKDMIELLKLEI 685 (773)
Q Consensus 657 l~~ei~kkie~~~~~~~ik~kiE~LK~Ev 685 (773)
||..||+..|. .+|--||.-|.|+
T Consensus 174 ---e~s~kId~Ev~--~lk~qi~s~K~qt 197 (220)
T KOG3156|consen 174 ---EISTKIDQEVT--NLKTQIESVKTQT 197 (220)
T ss_pred ---HHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 77777775542 3555555555544
No 273
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=44.45 E-value=2.7e+02 Score=30.72 Aligned_cols=43 Identities=30% Similarity=0.398 Sum_probs=27.9
Q ss_pred HhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHH
Q 004120 624 LESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIE 666 (773)
Q Consensus 624 ~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie 666 (773)
+++.|++|+-|++++.++.+.-...+-+...+.-+++..++++
T Consensus 161 Lesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~ 203 (269)
T PF05278_consen 161 LESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLE 203 (269)
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988888753322223334444444444444
No 274
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=44.43 E-value=7.4e+02 Score=31.05 Aligned_cols=252 Identities=20% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHH---HhHHHHH-HHHHcCcHHHHHHHHHHhccCCCCCCCCChH
Q 004120 436 KLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKE---VDHEFSE-AAKAMGMQEKFATLRAEFSKGNSRDQLMDPI 511 (773)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (773)
+|+.|.++|| +||.+|+ ..+--+-+.|+|+..| ++.+|++ -+-+..|+.++..+..-|--+.++-|.-|.+
T Consensus 499 ~L~sE~~~lk-~il~~Ke----e~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrl 573 (961)
T KOG4673|consen 499 KLQSEENKLK-SILRDKE----ETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRL 573 (961)
T ss_pred HHHHHHHHHH-HHhhhHH----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhh
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHH---HHHHHHHHHHhHHhhcCcchHHHHHHHHH
Q 004120 512 LMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKA---AKLKQEINKKFEEVICRPDIKEKMEAIKA 588 (773)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~---~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~ 588 (773)
=.+..-.-.+.+-|.++.--.-.+++.|-.--+|-.=--..-++-... +.--+|+-+.+. --.--|---+|+|.+
T Consensus 574 kQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~--~TTrPLlRQIE~lQ~ 651 (961)
T KOG4673|consen 574 KQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVP--ETTRPLLRQIEALQE 651 (961)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccccHHHHHHHHHHH
Q ss_pred HHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHH-HhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHH
Q 004120 589 KLQDSGASSFSDLEDDLKEKLVETKKEIESELIDG-LESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIED 667 (773)
Q Consensus 589 E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~-~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~ 667 (773)
=+.++ ++.-.-+...|-+++. +-+..|+.. +.--|-+-+.|..|....+..-.+.-++.....|.+-..+.=..
T Consensus 652 tl~~~-~tawereE~~l~~rL~----dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr 726 (961)
T KOG4673|consen 652 TLSKA-ATAWEREERSLNERLS----DSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNR 726 (961)
T ss_pred HHhhh-hhHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHH
Q 004120 668 VINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQR 710 (773)
Q Consensus 668 ~~~~~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ 710 (773)
+ .+.+..+-+++.|+. ..+.++-.|+++|++.
T Consensus 727 ~---~~~~~e~~~~qeE~~--------~l~~r~~~le~e~r~~ 758 (961)
T KOG4673|consen 727 A---AENRQEYLAAQEEAD--------TLEGRANQLEVEIREL 758 (961)
T ss_pred H---hhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
No 275
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.31 E-value=30 Score=37.03 Aligned_cols=40 Identities=43% Similarity=0.569 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhc
Q 004120 604 DLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQ 644 (773)
Q Consensus 604 ~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~ 644 (773)
++|+|++.+.+| +.+|..-+..|.-+++-++-+.|.+--.
T Consensus 139 e~kekl~E~~~E-keeL~~eleele~e~ee~~erlk~le~E 178 (290)
T COG4026 139 ELKEKLEELQKE-KEELLKELEELEAEYEEVQERLKRLEVE 178 (290)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544 3344444555555666666555555543
No 276
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=44.03 E-value=2.3e+02 Score=27.33 Aligned_cols=73 Identities=33% Similarity=0.270 Sum_probs=43.6
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHH---HhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccch
Q 004120 597 SFSDLEDDLKEKLVETKKEIESELIDG---LESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSD 673 (773)
Q Consensus 597 ~~~~l~~~Lkeki~k~k~Ef~~~l~~~---~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ 673 (773)
.+..++..+-+....+...|-..|+.. +..+.+-++| +. ...+.-+.++++|...|+.
T Consensus 32 ~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~---n~----------~e~e~Y~~~~~~i~~~i~~------ 92 (139)
T PF05615_consen 32 SDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEM---NK----------RERENYEQLNEEIEQEIEQ------ 92 (139)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----------HHHHHHHHHHHHHHHHHHH------
Confidence 333344344566666666766666665 2222222221 11 2234677789999999984
Q ss_pred hHHHHHHHHHHHHhh
Q 004120 674 LKDMIELLKLEIAKA 688 (773)
Q Consensus 674 ik~kiE~LK~Evaka 688 (773)
++..|+.||.++..+
T Consensus 93 ~k~~ie~lk~~L~~a 107 (139)
T PF05615_consen 93 AKKEIEELKEELEEA 107 (139)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578899999988844
No 277
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=43.98 E-value=1.8e+02 Score=25.56 Aligned_cols=43 Identities=28% Similarity=0.288 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 004120 579 IKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDG 623 (773)
Q Consensus 579 lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~ 623 (773)
|+.++..|+.--.+.-.+.+++ ..++++|+.+-.|+++.....
T Consensus 19 i~~~~~~l~~l~~~~l~~~~~d--~~~~~el~~l~~~i~~~~~~~ 61 (103)
T PF00804_consen 19 IKEKLNELRKLHKKILSSPDQD--SELKRELDELTDEIKQLFQKI 61 (103)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333332333322 578888998888888776666
No 278
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.70 E-value=32 Score=40.62 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=53.5
Q ss_pred CCeEEEEEEeecCCCcc--------ccccccCCCC---CHH-----HHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhH
Q 004120 197 DGRTYMFMGHQKGRNTK--------ENIQRNFGMP---TPH-----GYRKALRMMYYADHHGFPIVTFIDTPGAYADLKS 260 (773)
Q Consensus 197 ~GrpV~VIa~dkg~~~~--------e~~~~ngG~~---~pe-----g~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~A 260 (773)
|+.+|.|.|.|.=|... +|.....|.+ ... .+--|..+|+.|...|.-|| ||||+|-+-..
T Consensus 405 NkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVv-LiDTAGR~~~~-- 481 (587)
T KOG0781|consen 405 NKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVV-LIDTAGRMHNN-- 481 (587)
T ss_pred CCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEE-EEeccccccCC--
Confidence 78899999998644211 2222112211 122 23346677888888888765 68999954221
Q ss_pred HHhchHHHHHHHHHHHhCCCCcEEEEEcCCCcc
Q 004120 261 EELGQGEAIAHNLRTMFGLKVPIISIVIGEGGS 293 (773)
Q Consensus 261 Ee~Gqa~aIAr~L~ams~l~VP~ISVViGeg~G 293 (773)
....+.|..+.....|-..+.+|++.=
T Consensus 482 ------~~lm~~l~k~~~~~~pd~i~~vgealv 508 (587)
T KOG0781|consen 482 ------APLMTSLAKLIKVNKPDLILFVGEALV 508 (587)
T ss_pred ------hhHHHHHHHHHhcCCCceEEEehhhhh
Confidence 234556666777778888888888643
No 279
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=43.46 E-value=1.9e+02 Score=33.18 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhcccc
Q 004120 223 PTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCA 302 (773)
Q Consensus 223 ~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~a 302 (773)
-|..+...+++.++.|+..+.=+|.++=.+|.. +.-+.=--+.+++.+ +.+++|+||-| |.= -
T Consensus 173 QG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~---eDL~~Fn~e~v~~ai---~~~~~Pvis~I-GHE----------~ 235 (438)
T PRK00286 173 QGEGAAASIVAAIERANARGEDVLIVARGGGSL---EDLWAFNDEAVARAI---AASRIPVISAV-GHE----------T 235 (438)
T ss_pred cCccHHHHHHHHHHHhcCCCCCEEEEecCCCCH---HHhhccCcHHHHHHH---HcCCCCEEEec-cCC----------C
Confidence 345556777788888877666688888888843 111100013445444 44689999843 221 4
Q ss_pred ceeeeecCCeeeeeCHHHHHHHhhhhc
Q 004120 303 NKLLMLENAVFYVASPEACAAILWKSA 329 (773)
Q Consensus 303 D~Vlm~e~A~~sVisPEgaAsIl~rd~ 329 (773)
|+.++=--|...+.-|-+||.++..+.
T Consensus 236 D~tl~D~vAd~ra~TPtaaae~~~~~~ 262 (438)
T PRK00286 236 DFTIADFVADLRAPTPTAAAELAVPDR 262 (438)
T ss_pred CccHHHHhhhccCCChHHHHHHhCccH
Confidence 555555557777778888888876543
No 280
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=42.85 E-value=3.3e+02 Score=26.62 Aligned_cols=18 Identities=11% Similarity=0.338 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 004120 695 KSKCKIQALEQQIKQRLS 712 (773)
Q Consensus 695 ~~k~KIe~l~~~I~~~ie 712 (773)
+.+.-|..|..+|.++|.
T Consensus 122 ~l~~qv~~~~~~~~~~~~ 139 (141)
T PRK08476 122 QLLSQMPEFKEALNAKLS 139 (141)
T ss_pred HHHHhHHHHHHHHHHHhh
Confidence 445667777777777764
No 281
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=42.61 E-value=6.7e+02 Score=30.05 Aligned_cols=131 Identities=21% Similarity=0.286 Sum_probs=73.0
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCC
Q 004120 516 ITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGA 595 (773)
Q Consensus 516 ~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~ 595 (773)
++-+-+.|..-|-..|||.-+.+.+.--= .+---+.+..|+.||.+.+.=|.-.-.++.|-++.+.|++
T Consensus 234 fdY~~~~Y~~fl~~~~~~~~~e~Elk~~f----~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~e------- 302 (622)
T COG5185 234 FDYFTESYKSFLKLEDNYEPSEQELKLGF----EKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLRE------- 302 (622)
T ss_pred HHHHHHHHHHHhcCCCccCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 34555677777888899987776543211 1112235556666665544333322233344444444443
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhh---HHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccc
Q 004120 596 SSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKS---KAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSS 672 (773)
Q Consensus 596 s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~s---k~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~ 672 (773)
-|+.|.-+..++.+ -.|..+++ .-.++++|+.||.+|=+++ -
T Consensus 303 ---------------------------k~r~l~~D~nk~~~~~~~mk~K~~~-----~~g~l~kl~~eie~kEeei---~ 347 (622)
T COG5185 303 ---------------------------KWRALKSDSNKYENYVNAMKQKSQE-----WPGKLEKLKSEIELKEEEI---K 347 (622)
T ss_pred ---------------------------HHHHHhhhHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHH---H
Confidence 12222222222221 11111111 1247888888888887776 5
Q ss_pred hhHHHHHHHHHHHHhhCCCC
Q 004120 673 DLKDMIELLKLEIAKAGKKP 692 (773)
Q Consensus 673 ~ik~kiE~LK~Evakag~~p 692 (773)
-|++++..|+..|.+-|.+|
T Consensus 348 ~L~~~~d~L~~q~~kq~Is~ 367 (622)
T COG5185 348 ALQSNIDELHKQLRKQGIST 367 (622)
T ss_pred HHHhhHHHHHHHHHhcCCCH
Confidence 58899999999999999876
No 282
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=42.34 E-value=63 Score=36.05 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHH-HHhhhcCCcEE
Q 004120 222 MPTPHGYRKALRMM-YYADHHGFPIV 246 (773)
Q Consensus 222 ~~~peg~rKA~R~m-~lAekf~LPIV 246 (773)
+-+.+.++.+++.| +.|.+||+|||
T Consensus 103 a~s~d~~~ei~eglr~~a~kfgvpiv 128 (324)
T COG2144 103 AKSEDQAREILEGLRKGARKFGVPIV 128 (324)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCcee
Confidence 35688899999988 58899999998
No 283
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=42.18 E-value=7.9e+02 Score=30.79 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhCCh
Q 004120 674 LKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSS 718 (773)
Q Consensus 674 ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~ss 718 (773)
+++.+..|+..+...-..-... .++|..|+.+++.-...|=++.
T Consensus 396 ~~~e~q~L~ekl~~lek~~re~-qeri~~LE~ELr~l~~~A~E~q 439 (717)
T PF09730_consen 396 LESEVQNLKEKLMSLEKSSRED-QERISELEKELRALSKLAGESQ 439 (717)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhHH
Confidence 5555555555554443322222 5577777777766655555443
No 284
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=42.13 E-value=59 Score=38.78 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=59.7
Q ss_pred HHhhh-cCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeee
Q 004120 236 YYADH-HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFY 314 (773)
Q Consensus 236 ~lAek-f~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~s 314 (773)
.+|.. ||-|-+.+.|-|-+.+..+-| .+.++.+..+...++-+|.|-.+++ +++++|+++++.++.+.
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE-----~AL~~Ai~~~k~rG~~vvviaHRPs------~L~~~Dkilvl~~G~~~ 550 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGE-----AALAAAILAAKARGGTVVVIAHRPS------ALASVDKILVLQDGRIA 550 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHH-----HHHHHHHHHHHHcCCEEEEEecCHH------HHhhcceeeeecCChHH
Confidence 34443 899999999999998875544 3567777777777777777767774 56779999999999999
Q ss_pred eeCHH--HHHHHh
Q 004120 315 VASPE--ACAAIL 325 (773)
Q Consensus 315 VisPE--gaAsIl 325 (773)
..||+ +.+.++
T Consensus 551 ~FG~r~eVLa~~~ 563 (580)
T COG4618 551 AFGPREEVLAKVL 563 (580)
T ss_pred hcCCHHHHHHHhc
Confidence 99985 344444
No 285
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=42.11 E-value=1.2e+03 Score=32.73 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 004120 650 FRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIA 686 (773)
Q Consensus 650 ~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Eva 686 (773)
+..+.++|.++..++=.++ ..+..+++.+..+++
T Consensus 1060 ~~~~~~el~~~l~kke~El---~~l~~k~e~e~~~~~ 1093 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESEL---SQLQSKLEDEQAEVA 1093 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHH
Confidence 4455555555555555544 556666666666555
No 286
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=41.80 E-value=5e+02 Score=31.85 Aligned_cols=40 Identities=15% Similarity=0.400 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCCC
Q 004120 463 LNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRD 505 (773)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (773)
+++=+..|+.|.++..+.. -.|+..|..|+..+......+
T Consensus 34 mseev~~L~eEk~~~~~~V---~eLE~sL~eLk~q~~~~~~~~ 73 (617)
T PF15070_consen 34 MSEEVRTLKEEKEHDISRV---QELERSLSELKNQMAEPPPPE 73 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccCCcc
Confidence 3444455555555544442 245666666666655554333
No 287
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.31 E-value=8.8e+02 Score=30.74 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHHhhh
Q 004120 435 EKLEDEVEKLKQQILKAKE 453 (773)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~ 453 (773)
..+..|++.+++++.+-..
T Consensus 228 ~~l~~e~e~l~~~~~el~~ 246 (908)
T COG0419 228 EELEQEIEALEERLAELEE 246 (908)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655544
No 288
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=40.10 E-value=1.3e+02 Score=36.31 Aligned_cols=138 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCC-CCCCChHHHHHHHHHHHHHhhccCCCC--------Ch
Q 004120 463 LNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSR-DQLMDPILMDKITELKNEFNQGLASAP--------NY 533 (773)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------n~ 533 (773)
|..|.++.-.|.|.|.|---...-.+.|..-...=++-.+.- +..+.-+-..-++.+|.+|++.+.+.+ -.
T Consensus 328 L~~i~e~~lseYD~qAs~y~~~V~~~KrqqL~~kl~s~v~~~fq~~L~~L~~~lle~fk~~~~~~~~~~~gF~es~~~~~ 407 (772)
T KOG2203|consen 328 LSSILEECLSEYDEQASRYDEGVYSEKRQQLNEKLLSHVYPTFQDVLGHLREGLLESFKLAFEKALKATEGFSESVADGK 407 (772)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHH
Q ss_pred hhHHHHHHHhhhhccccccchhHHHH-HHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHH
Q 004120 534 ASLKYKLDMLKEFSNAKSLLDSKNKA-AKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVET 612 (773)
Q Consensus 534 ~~Lk~ki~~~ke~s~~~~~~~~~~~~-~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~ 612 (773)
-++-.|.++-=|.-..+-..=-+++| +||-+||...++ +.=+-.|+||+..+
T Consensus 408 ~~~~~~fde~~E~~~~~~~~wd~ski~~Kls~diea~i~---------------------------~lr~akLke~~~~~ 460 (772)
T KOG2203|consen 408 QSCEKKFDEECETAKIEQALWDTSKIREKLSRDIEAHIS---------------------------SLRTAKLKEKTGLY 460 (772)
T ss_pred HHHHHHHHhhhHhhcccccccchhHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhc
Q 004120 613 KKEIESELIDGLESL 627 (773)
Q Consensus 613 k~Ef~~~l~~~~~sl 627 (773)
.+-+..+|+++...|
T Consensus 461 e~~l~~else~Ve~l 475 (772)
T KOG2203|consen 461 EKKLVPELSEPVEAL 475 (772)
T ss_pred HhcccHhhhHHHHHH
No 289
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=39.77 E-value=1.1e+02 Score=33.73 Aligned_cols=85 Identities=21% Similarity=0.371 Sum_probs=60.3
Q ss_pred hhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHH
Q 004120 434 KEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILM 513 (773)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (773)
...+..+++.+++++..... .+..|+.-|+|-+.|+++ .+.||.+|+ .+.|..|
T Consensus 171 i~~~~~~~~~~~~~l~~l~~-----de~~Le~KIekkk~ELER----------~qKRL~sLq-----------~vRPAfm 224 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLAS-----DEANLEAKIEKKKQELER----------NQKRLQSLQ-----------SVRPAFM 224 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH----------HHHHHHHHH-----------hcChHHH
Confidence 34566677777777755432 234477888888888876 367787775 6899999
Q ss_pred HHHHHHHHH----HhhccCCCCChhhHHHHHHHhh
Q 004120 514 DKITELKNE----FNQGLASAPNYASLKYKLDMLK 544 (773)
Q Consensus 514 ~~~~~~~~~----~~~~~~~~~n~~~Lk~ki~~~k 544 (773)
+..|+|..| |..-+-.--|..-|.+++...+
T Consensus 225 dEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~ 259 (267)
T PF10234_consen 225 DEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYN 259 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999987766 4455556667888888887765
No 290
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=39.33 E-value=4.7e+02 Score=27.31 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhccCCC-CChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHh
Q 004120 515 KITELKNEFNQGLASA-PNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQ 591 (773)
Q Consensus 515 ~~~~~~~~~~~~~~~~-~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ 591 (773)
.+..+|+-||.-...- -=..+||.+|..++. .....+++-.||.++-. .|.|-+..++.|+.
T Consensus 10 af~~iK~YYndIT~~NL~lIksLKeei~emkk---------~e~~~~k~m~ei~~eN~------~L~epL~~a~~e~~ 72 (201)
T PF13851_consen 10 AFQEIKNYYNDITLNNLELIKSLKEEIAEMKK---------KEERNEKLMAEISQENK------RLSEPLKKAEEEVE 72 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHH
Confidence 4556666666432211 113577777777772 12233445566666654 56677777777665
No 291
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=39.22 E-value=41 Score=35.35 Aligned_cols=53 Identities=26% Similarity=0.283 Sum_probs=32.5
Q ss_pred cCCcEEEEecCCCCCCCHhHHHh--chHHHHHHHHHHHhCCCCcEEEEEcCCCccchh
Q 004120 241 HGFPIVTFIDTPGAYADLKSEEL--GQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGA 296 (773)
Q Consensus 241 f~LPIVtLIDTpGA~~g~~AEe~--Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGA 296 (773)
.++|++.|+||.|-+.|...|.. |+-.-+-.....-..+..-.|+||+ +||+|
T Consensus 2 rRlP~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVT---F~~~a 56 (207)
T COG4245 2 RRLPCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVT---FGGPA 56 (207)
T ss_pred CCCCEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEE---ecCcc
Confidence 47899999999999999776664 4432233332222224455666665 44443
No 292
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=39.21 E-value=24 Score=39.54 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=34.0
Q ss_pred EEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 004120 190 VTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 253 (773)
Q Consensus 190 VtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpG 253 (773)
+.|+-.+.+.|-+||..|+.. =..+++-|.+.|+|+|+|+||..
T Consensus 143 l~Gi~~m~~~Pd~viv~d~~~--------------------e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 143 LGGIKDMGGLPDLLFVIDTNK--------------------EDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred ccchhhcccCCCEEEEeCCcc--------------------chHHHHHHHHcCCCEEEEeeCCC
Confidence 456777778888888888641 12567889999999999999864
No 293
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=39.15 E-value=92 Score=34.19 Aligned_cols=187 Identities=17% Similarity=0.262 Sum_probs=90.6
Q ss_pred hcCCCChhHHhhhcCCCCCCc-------hhhhhhhhhhhheeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccc
Q 004120 142 LYTHLTPIQRVNIARHPNRPT-------FLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKE 214 (773)
Q Consensus 142 I~~~Lt~weRV~l~Rdp~RP~-------~~d~I~~l~DdF~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e 214 (773)
++..|+-++-|.+..+.+-|| ++++.-.+++.+.+. +-..+|||.+..
T Consensus 24 i~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~--------------------~ik~lVIACNTA----- 78 (269)
T COG0796 24 IRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLER--------------------GIKALVIACNTA----- 78 (269)
T ss_pred HHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHc--------------------CCCEEEEecchH-----
Confidence 445566666677888888888 222333344433332 135667777642
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCc-c
Q 004120 215 NIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGG-S 293 (773)
Q Consensus 215 ~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~-G 293 (773)
-+.-+=.+-++|++|||.+| ||+.+-...-..| .|.|+-=+|+ -
T Consensus 79 ---------------Sa~al~~LR~~~~iPVvGvi--Paik~A~~~t~~~------------------~IgViaT~~Tvk 123 (269)
T COG0796 79 ---------------SAVALEDLREKFDIPVVGVI--PAIKPAVALTRNG------------------RIGVIATPATVK 123 (269)
T ss_pred ---------------HHHHHHHHHHhCCCCEEEec--cchHHHHHhccCC------------------eEEEEeccchhc
Confidence 12222245567899999999 9976433222222 4544433322 1
Q ss_pred chhhhccccceeeee-cCCeee-eeCHHHHHHHhhhhccCchHHHHHhcccHHHHHHcCCceeeecCCCCCCCCChHHHH
Q 004120 294 GGALAIGCANKLLML-ENAVFY-VASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVIPEPLGGAHADPSWTS 371 (773)
Q Consensus 294 GGAlA~g~aD~Vlm~-e~A~~s-VisPEgaAsIl~rd~~~a~eaAe~lkitA~dL~~lGiVD~IIpE~lGgAh~dP~~tr 371 (773)
..+|. |.+-.+ ++..+. +.+|+ .+.++-.....-+.+-+.++.....+...| +|.+| +|=.|- |
T Consensus 124 s~~y~----~~i~~~~~~~~V~~la~p~-lV~lvE~g~~~~~~~~~~l~~~l~~~~~~~-~DtlV---LGCTHy-P---- 189 (269)
T COG0796 124 SNAYR----DLIARFAPDCEVESLACPE-LVPLVEEGIRGGPVALEVLKEYLPPLQEAG-PDTLV---LGCTHY-P---- 189 (269)
T ss_pred cHHHH----HHHHHhCCCCEEEEecCcc-hHHHHhcccccCHHHHHHHHHHhcchhccC-CCEEE---EeCcCc-H----
Confidence 23332 222211 122222 22333 333332222222333333344444455556 88888 777772 3
Q ss_pred HHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHhh
Q 004120 372 QQIKIAINESMDE-LGKMDTQELLKHRNLKFRK 403 (773)
Q Consensus 372 ~~L~~aL~~~L~e-L~~l~~~~l~~~R~~k~r~ 403 (773)
.|+..|...+-. ..=+++..-...|..++..
T Consensus 190 -ll~~~i~~~~~~~v~lids~~~~a~~~~~~L~ 221 (269)
T COG0796 190 -LLKPEIQQVLGEHVALIDSGAETARRLARLLS 221 (269)
T ss_pred -HHHHHHHHHhCCCceEeCCHHHHHHHHHHHhC
Confidence 455555555543 3334444444555555533
No 294
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.76 E-value=2e+02 Score=31.68 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=8.2
Q ss_pred HHHHhCChhhHHHHHHH
Q 004120 711 LSEAVNSSELKEKHEEL 727 (773)
Q Consensus 711 ie~a~~ss~lk~k~E~L 727 (773)
|.-+++|-.+.+.|-.+
T Consensus 120 idvil~SkSfsD~IsRv 136 (265)
T COG3883 120 IDVILNSKSFSDLISRV 136 (265)
T ss_pred HHHHHccCcHHHHHHHH
Confidence 44445555555554443
No 295
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.08 E-value=8e+02 Score=31.29 Aligned_cols=116 Identities=25% Similarity=0.275 Sum_probs=67.7
Q ss_pred HHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhh--
Q 004120 619 ELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKS-- 696 (773)
Q Consensus 619 ~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p~~~~-- 696 (773)
.+-.-..++.+..+-++...+++. ...++|++++...+.+. +-+++-++.||.+.-+....-+.-+
T Consensus 661 kyK~lI~~lD~~~e~lkQ~~~~l~---------~e~eeL~~~vq~~~s~h---sql~~q~~~Lk~qLg~~~~~~~~~~q~ 728 (970)
T KOG0946|consen 661 KYKGLIRELDYQIENLKQMEKELQ---------VENEELEEEVQDFISEH---SQLKDQLDLLKNQLGIISSKQRDLLQG 728 (970)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccccchhhHHhH
Confidence 344445567777777776555555 35677888888777765 7799999999998874433111100
Q ss_pred -------HHHHHHHHHHHHHHHHHHhCC-hhh---HHHHHHHHHHHhhccCCCCCCCCCcc
Q 004120 697 -------KCKIQALEQQIKQRLSEAVNS-SEL---KEKHEELMAEISDATKSPGGLDGGVN 746 (773)
Q Consensus 697 -------k~KIe~l~~~I~~~ie~a~~s-s~l---k~k~E~Lk~e~a~a~~~~~~~~~s~~ 746 (773)
-+-+.++..+++.-+.+-..+ .+| +..+|..|...-.|...-+...+.+.
T Consensus 729 ~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~ 789 (970)
T KOG0946|consen 729 AEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLG 789 (970)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhh
Confidence 112444455555544333222 335 66677777777555555555555443
No 296
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=37.69 E-value=2.6e+02 Score=30.25 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=47.5
Q ss_pred HHHHHHHhhcCCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHH
Q 004120 584 EAIKAKLQDSGASSFSD-LEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEIN 662 (773)
Q Consensus 584 ~~lk~E~~ka~~s~~~~-l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~ 662 (773)
++||+++.++....... ...++...+.++-.+.+..+..+-..|...-+..... ....-..++..|+++|+
T Consensus 62 ~~lk~~Ye~~~~~~~~~~YE~e~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~--------~~~~~~~~i~~l~~~I~ 133 (254)
T PF03194_consen 62 EALKAEYEKASKKEKYGGYEREFLRYLQRLIRDCDRRIERAKERLEQTQEEQAKE--------ADEEKAEKIDELDEKIG 133 (254)
T ss_pred HHHHHHHHhCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc--------hhhhHHHHHHHHHHHHH
Confidence 67888888776555444 8889999999999999988887755554433322100 00001346666776666
Q ss_pred HHHHH
Q 004120 663 KKIED 667 (773)
Q Consensus 663 kkie~ 667 (773)
+.+.+
T Consensus 134 ~ll~~ 138 (254)
T PF03194_consen 134 ELLKE 138 (254)
T ss_pred HHHHH
Confidence 66553
No 297
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=37.58 E-value=3.1e+02 Score=28.66 Aligned_cols=37 Identities=32% Similarity=0.498 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHH------HHHHHHhCChhhHHHHHHHHHHHhh
Q 004120 697 KCKIQALEQQIK------QRLSEAVNSSELKEKHEELMAEISD 733 (773)
Q Consensus 697 k~KIe~l~~~I~------~~ie~a~~ss~lk~k~E~Lk~e~a~ 733 (773)
.+|+.+|.+.++ +.+..++...+++++|..|+.|++.
T Consensus 92 ~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~ 134 (201)
T KOG4603|consen 92 TEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAG 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 445555555443 4688899999999999999999853
No 298
>COG5570 Uncharacterized small protein [Function unknown]
Probab=37.43 E-value=33 Score=29.01 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=9.7
Q ss_pred HHHHHHHHhhccc
Q 004120 660 EINKKIEDVINSS 672 (773)
Q Consensus 660 ei~kkie~~~~~~ 672 (773)
.+..+|.++||+|
T Consensus 16 ~le~ei~ea~n~P 28 (57)
T COG5570 16 NLEREIQEAMNSP 28 (57)
T ss_pred hHHHHHHHHhcCC
Confidence 3455678999998
No 299
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=37.19 E-value=27 Score=37.74 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=32.7
Q ss_pred EEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 004120 190 VTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 253 (773)
Q Consensus 190 VtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpG 253 (773)
..|+..+.+.|=.||..|+.. =..+++-|.+.|+|+|+|+||..
T Consensus 148 ~~Gi~~m~~~Pd~iii~d~~~--------------------~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 148 LGGIKDMGGLPDALFVVDPNK--------------------EHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred ccCccccccCCCEEEEeCCCc--------------------cHHHHHHHHHhCCCEEEEeeCCC
Confidence 455666677787788877641 12567889999999999999864
No 300
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=37.04 E-value=8.7e+02 Score=30.03 Aligned_cols=262 Identities=12% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 004120 436 KLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDK 515 (773)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (773)
+|..++++++...-.++... ..--..++.+++..+..++|+.+-+.-|.+.+.=..|.+. +-..+--+..-+
T Consensus 255 kLs~qldnv~~ev~~~~se~--~vv~ky~~~ve~ar~~F~~EL~si~p~l~~~d~~~~L~~~------dln~liahah~r 326 (657)
T KOG1854|consen 255 KLSNQLDNVKREVSSSNSEA--EVVGKYSELVEKARHQFEQELESILPGLSLADKEENLSED------DLNKLIAHAHTR 326 (657)
T ss_pred HHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccHh------HHHHHHHHHHHH
Q ss_pred HHHHHHHHhh----------------ccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcch
Q 004120 516 ITELKNEFNQ----------------GLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDI 579 (773)
Q Consensus 516 ~~~~~~~~~~----------------~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~l 579 (773)
|+++..+|.. ||. ....++.|+....+........+.+..|+-.+...+.+..+..++.-
T Consensus 327 vdql~~~l~d~k~~~~~~~~~aiEk~Rl~---~~~a~~~~~~~~~~~h~~~~~~E~~~~~~~~~~~~~~el~~ql~~qa- 402 (657)
T KOG1854|consen 327 VDQLQKELEDQKADEELHIKRAIEKQRLQ---DSRALRAQLEYELEAHRRELQQELFKLIEEIRSSSKNELRNQLKRQA- 402 (657)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhh---hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHH
Q 004120 580 KEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNE 659 (773)
Q Consensus 580 kek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ 659 (773)
+--.+.||+=|.--..-=.......|-|++.+.++.-..++..+|..|..--..|.+++..-.+.+...-+--=...|+-
T Consensus 403 ~ah~dhik~vvr~q~q~~~~e~~~~~~e~~l~ernl~~~qvg~aL~rLrgie~aL~~~~~~~~e~r~a~q~w~ac~nlk~ 482 (657)
T KOG1854|consen 403 KAHLDHIKDVVRQQEQLLTIEFKQKLEEAVLQERNLHSSQVGKALSRLRGIEQALQERVRAELEARKAKQLWLACSNLKD 482 (657)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchHhHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q ss_pred HHHHH---------------HHHhhccch-hHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHH
Q 004120 660 EINKK---------------IEDVINSSD-LKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQ 709 (773)
Q Consensus 660 ei~kk---------------ie~~~~~~~-ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~ 709 (773)
-.|+- |.++-++++ +.--++.+--|..--|.-|..+++++-..|...++.
T Consensus 483 s~~~g~~e~r~~pLg~~vn~~k~~~~~delv~a~~~~ipk~~~~rgiysee~L~~RF~~l~ki~rr 548 (657)
T KOG1854|consen 483 SLNKGHYEMRRHPLGKHVNALKEVTKDDELVAAALDSIPKEADTRGIYSEEDLRNRFNTLSKIARR 548 (657)
T ss_pred hhhccccccccCchhHHHHHHhccCCcHHHHHHHHHhcccccccCCCCCHHHHHHHHHHHHHHHHH
No 301
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=36.56 E-value=8.1e+02 Score=29.27 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=23.5
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHH----HHcCcHHHHHHHHHHhcc
Q 004120 459 PDAALNVMIQKLKKEVDHEFSEAA----KAMGMQEKFATLRAEFSK 500 (773)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 500 (773)
-+++||+.|.|||..-...-.... .-+-|+.|...|+--+.|
T Consensus 311 edmaLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~k 356 (527)
T PF15066_consen 311 EDMALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITK 356 (527)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhh
Confidence 357899999999976433211111 112355666666554443
No 302
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=36.25 E-value=3e+02 Score=25.00 Aligned_cols=70 Identities=24% Similarity=0.308 Sum_probs=44.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCC--hhhHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Q 004120 649 NFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPD--VKSKCKIQALEQQIKQRLSEAVNSSELKEKHEE 726 (773)
Q Consensus 649 ~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p~--~~~k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~ 726 (773)
.|-..++.++.+|.+ |+..++.|..-...++.+++ +..+.+++.+..+|++... .++..+..
T Consensus 5 ~F~~~v~~I~~~I~~----------i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~------~i~~~lk~ 68 (117)
T smart00503 5 EFFEKVEEIRANIQK----------ISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAK------EIRAKLKE 68 (117)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 445555555555543 44555555555556666665 4567888888888887654 46778888
Q ss_pred HHHHHhhc
Q 004120 727 LMAEISDA 734 (773)
Q Consensus 727 Lk~e~a~a 734 (773)
|.......
T Consensus 69 l~~~~~~~ 76 (117)
T smart00503 69 LEKENLEN 76 (117)
T ss_pred HHHhHHhh
Confidence 87766433
No 303
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=36.18 E-value=33 Score=36.26 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=31.3
Q ss_pred EEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 004120 191 TGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 253 (773)
Q Consensus 191 tGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpG 253 (773)
.|+......|-.||..|+.. =..+++-|.+.|+|+|+++||..
T Consensus 147 ~Gi~~m~~~Pd~vii~d~~~--------------------~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 147 GGIKDMKKLPDLLFVIDPVK--------------------EKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred cCccccccCCCEEEEeCCCc--------------------cHHHHHHHHHcCCCEEEEeeCCC
Confidence 45555666777777777641 12567889999999999999865
No 304
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=36.14 E-value=51 Score=37.22 Aligned_cols=60 Identities=18% Similarity=0.230 Sum_probs=37.3
Q ss_pred CCeEEEEEEeecCCCc----------cccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCH
Q 004120 197 DGRTYMFMGHQKGRNT----------KENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADL 258 (773)
Q Consensus 197 ~GrpV~VIa~dkg~~~----------~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~ 258 (773)
+|++|++.|.|-=|-. +-++.+-.|..|.+-+.-+-.+++.|...|.=+| ||||.| ++..
T Consensus 166 ~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~Dvv-liDTAG-RLhn 235 (340)
T COG0552 166 QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVV-LIDTAG-RLHN 235 (340)
T ss_pred CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEE-EEeCcc-cccC
Confidence 6889999998853210 0011222233455555677788888888887755 689998 4443
No 305
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=36.02 E-value=54 Score=38.50 Aligned_cols=66 Identities=11% Similarity=0.138 Sum_probs=41.2
Q ss_pred ccccCCCCC-HHHHHHHHHHHHHhhhcCCcEEEEecC--CCC-CCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCC
Q 004120 216 IQRNFGMPT-PHGYRKALRMMYYADHHGFPIVTFIDT--PGA-YADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEG 291 (773)
Q Consensus 216 ~~~ngG~~~-peg~rKA~R~m~lAekf~LPIVtLIDT--pGA-~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg 291 (773)
++-++|++- |.+|-+.+| ++|+++|+.+| +|= .|+ +.|. . .+ ....+. +|=| +++|+|
T Consensus 269 v~g~gG~~~p~~~yl~~lr--~lc~~~g~lLI--~DEV~TGfGRtG~-------~--~a---~e~~gv-~PDi-vtlgK~ 330 (504)
T PLN02760 269 VMGAGGVIPPPATYFEKIQ--AVLKKYDILFI--ADEVICAFGRLGT-------M--FG---CDKYNI-KPDL-VSLAKA 330 (504)
T ss_pred ccCCCCCcCCCHHHHHHHH--HHHHHcCCEEE--ecchhhCCcccch-------h--hH---HHhcCC-CCcE-EEeccc
Confidence 344566654 567777666 89999998887 462 354 4442 1 11 122344 5887 688999
Q ss_pred ccchhhhc
Q 004120 292 GSGGALAI 299 (773)
Q Consensus 292 ~GGGAlA~ 299 (773)
.|||.+.+
T Consensus 331 lggG~~Pi 338 (504)
T PLN02760 331 LSSAYMPI 338 (504)
T ss_pred ccCCcccc
Confidence 99986443
No 306
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.99 E-value=74 Score=33.35 Aligned_cols=86 Identities=27% Similarity=0.447 Sum_probs=52.2
Q ss_pred HHHHHhhhcCCcEEEE-ecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCC
Q 004120 233 RMMYYADHHGFPIVTF-IDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENA 311 (773)
Q Consensus 233 R~m~lAekf~LPIVtL-IDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A 311 (773)
|....|-.-+-|||.+ +|+||.. ++..+.+..++.+ +| +|+|+++-||+|.+|+-.+
T Consensus 95 rs~~~a~~~~~~VliIg~DcP~lt----------~elLa~a~taL~~--~p---aVLGpa~dGGy~llgLrr~------- 152 (211)
T COG3222 95 RSHVDAFDGSYPVLIIGMDCPGLT----------AELLADAFTALLQ--IP---AVLGPAFDGGYYLLGLRRF------- 152 (211)
T ss_pred HHHHHHhcCCCcEEEEecCCCccC----------HHHHHHHHHHHhc--Cc---ceecccccCcEEEEEeecc-------
Confidence 3333333334677666 8999964 1234555555543 34 6899999999998887553
Q ss_pred eeeeeCHHHHHHHhhhhccCchHHHHHhcccHHHHHHcCCc
Q 004120 312 VFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIA 352 (773)
Q Consensus 312 ~~sVisPEgaAsIl~rd~~~a~eaAe~lkitA~dL~~lGiV 352 (773)
.||-..+|=|.... .+.+|-+.+..+|+-
T Consensus 153 -----~pe~fe~ipwg~~~-------v~~lTl~~lrqng~~ 181 (211)
T COG3222 153 -----APELFEAIPWGTPD-------VLELTLKALRQNGID 181 (211)
T ss_pred -----CHHHHhcCCCCCch-------HHHHHHHHHHHcCCc
Confidence 57777777776442 223444445555543
No 307
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=35.78 E-value=1e+02 Score=32.74 Aligned_cols=70 Identities=16% Similarity=0.281 Sum_probs=42.9
Q ss_pred EEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHH
Q 004120 194 GSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNL 273 (773)
Q Consensus 194 ArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L 273 (773)
.+++|..|+||||-++ -..+++++-++.+.+.-.+|-+|=-+.+- +..=
T Consensus 124 ~~~~~~~ivvIGNAPT--------------------AL~~l~elie~~~~~palvIg~PVGFv~A-----------aesK 172 (210)
T COG2082 124 ERGEGGAIVVIGNAPT--------------------ALFELLELIEEGGIKPALVIGVPVGFVGA-----------AESK 172 (210)
T ss_pred HhcCCceEEEEeCCHH--------------------HHHHHHHHHHccCCCCcEEEEcCCcccch-----------HHHH
Confidence 3455557777887765 34456666666556666667777444441 2233
Q ss_pred HHHhCCCCcEEEEEcCCCccc
Q 004120 274 RTMFGLKVPIISIVIGEGGSG 294 (773)
Q Consensus 274 ~ams~l~VP~ISVViGeg~GG 294 (773)
.++....+|.|++.=..|+|+
T Consensus 173 e~L~~~~iP~itv~G~rGGS~ 193 (210)
T COG2082 173 EALRESPIPYITVRGRRGGSP 193 (210)
T ss_pred HHHHhCCCCeEEEecCCCCHH
Confidence 455667799999766665544
No 308
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.61 E-value=4.3e+02 Score=27.57 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=50.5
Q ss_pred HHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCC
Q 004120 522 EFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDL 601 (773)
Q Consensus 522 ~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l 601 (773)
|+-+.+...|+|.-|.+--..+.|-+ +.|+-=-|..|=++|.+. +-++-
T Consensus 19 evfk~vPQ~PHF~pL~~~~e~~REg~----------------------------A~Glm~~f~~l~e~v~~l---~idd~ 67 (190)
T PF05266_consen 19 EVFKKVPQSPHFSPLQEFKEELREGM----------------------------AVGLMVTFANLAEKVKKL---QIDDS 67 (190)
T ss_pred HHHHcCCCCCCChhhhcCcHHhhhHH----------------------------HHHHHHHHHHHHHHHHHc---ccCCc
Confidence 56678888999988765443333222 356666666676777655 22211
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH--HhhcCcchHHhhhHHHHhhh
Q 004120 602 EDDLKEKLVETKKEIESELIDG--LESLGLDVEVVKSKAKELSE 643 (773)
Q Consensus 602 ~~~Lkeki~k~k~Ef~~~l~~~--~~sl~~~~~~l~sk~k~~~~ 643 (773)
..+|+.-+... |+..|.+|..+.+|+..|..
T Consensus 68 -----------~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~ 100 (190)
T PF05266_consen 68 -----------RSSFESLMKTLSELEEHGFNVKFLRSRLNKLLS 100 (190)
T ss_pred -----------HHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 12444444444 88999999999988886653
No 309
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=35.30 E-value=9.1e+02 Score=30.19 Aligned_cols=184 Identities=13% Similarity=0.220 Sum_probs=91.1
Q ss_pred ChhhhHHHHHHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHHHhHHHHHHHHHc--Cc-HHHHHHHHHHhccCCCCCCCC
Q 004120 433 SKEKLEDEVEKLKQQILKAKESST-KPPDAALNVMIQKLKKEVDHEFSEAAKAM--GM-QEKFATLRAEFSKGNSRDQLM 508 (773)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~ 508 (773)
+..++-.-+..+..+.|+.-.... .-...+-.+--..|...++..+..++... .| +.-+......++++-...+..
T Consensus 289 ~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~lf~~qL~~L~~~~l~~Fk~~l~~~lk~~~~F 368 (742)
T PF05879_consen 289 VVEDFGKKLKSLRDKALEEYDEEASRYHKSVYQEKRQELESKIDSELQPLFQKQLKHLRKKLLESFKEALSSALKSGEDF 368 (742)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Confidence 334555555555555554322110 11223444455566667777777666542 11 122344455555433334455
Q ss_pred ChHHHHHHHHHHHHHhhccCCC-----------CChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCc
Q 004120 509 DPILMDKITELKNEFNQGLASA-----------PNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRP 577 (773)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~-----------~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~ 577 (773)
...+.....+...+|+...+.. ..+..|.+.|+..-+ ......+++++.++++-+..++++.+
T Consensus 369 a~~v~~~~~~~~~~F~~~a~~~~i~~~~ws~se~~~~~L~~dLd~~~~---~lR~~el~~l~~~~eK~l~~~l~e~v--- 442 (742)
T PF05879_consen 369 AEAVRECKQSALEEFEESAEDLVIEGADWSYSEEEREKLEEDLDEHSS---KLRKEELNELVARIEKKLKSELKEPV--- 442 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHH---
Confidence 5666677777778888765221 223444444443322 22222334444444433333333211
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhh
Q 004120 578 DIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVK 635 (773)
Q Consensus 578 ~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~ 635 (773)
..++. ....++=+-+...+..+-++....+...+.++++.-+...
T Consensus 443 ---------~~~l~----~~~~d~Wd~I~~~f~~~~~~~~~~~~~~~~~f~~s~~e~~ 487 (742)
T PF05879_consen 443 ---------ESLLE----NPSPDMWDRIRKLFESATESAVSKFSDRLKGFGLSEEENE 487 (742)
T ss_pred ---------HHHHh----CCChhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 12222 2235566666666666677777777777777776655444
No 310
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.20 E-value=1.2e+03 Score=30.63 Aligned_cols=76 Identities=28% Similarity=0.356 Sum_probs=52.7
Q ss_pred hhhhhHHHHHHHHH-------HHHHHhhccch----hHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 004120 649 NFRSKMENLNEEIN-------KKIEDVINSSD----LKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNS 717 (773)
Q Consensus 649 ~~~~k~~~l~~ei~-------kkie~~~~~~~----ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~s 717 (773)
.+..|+...|+|+. |-++.-+|=++ |+.-.+.|+. ++..|..|-....|+=.+||+.
T Consensus 953 el~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eELd~------------s~~sI~eLi~vLdqrK~eai~~ 1020 (1200)
T KOG0964|consen 953 ELMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEELDR------------SKDSILELITVLDQRKYEAIDL 1020 (1200)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhcc------------chhHHHHHHHHHHHhhHHHHHH
Confidence 45567777777763 33555555444 4444444443 5888999999999999999987
Q ss_pred hh--hHHHHHHHHHHHhhccC
Q 004120 718 SE--LKEKHEELMAEISDATK 736 (773)
Q Consensus 718 s~--lk~k~E~Lk~e~a~a~~ 736 (773)
+= .+.-|+++=..+.-+|.
T Consensus 1021 TFkqV~knFsevF~~LVp~G~ 1041 (1200)
T KOG0964|consen 1021 TFKQVKKNFSEVFSRLVPGGT 1041 (1200)
T ss_pred HHHHHHHHHHHHHHHhCCCCc
Confidence 65 88889999888865543
No 311
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=35.18 E-value=2.6e+02 Score=32.34 Aligned_cols=88 Identities=23% Similarity=0.228 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHhhhcC-CcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhcccc
Q 004120 224 TPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCA 302 (773)
Q Consensus 224 ~peg~rKA~R~m~lAekf~-LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~a 302 (773)
|..+..-+++.++.++..+ .=+|.++=.+|..-.--+ +. -+.+|+.+ +.+++|+||-|=-+ -
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~--Fn-~e~~~rai---~~~~~Pvis~iGHe-----------~ 230 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWS--FN-DEKVARAI---FLSKIPIISAVGHE-----------T 230 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhh--cC-cHHHHHHH---HcCCCCEEEecCcC-----------C
Confidence 3444556667776666543 567888887775422110 11 13445444 56889999843222 3
Q ss_pred ceeeeecCCeeeeeCHHHHHHHhhhh
Q 004120 303 NKLLMLENAVFYVASPEACAAILWKS 328 (773)
Q Consensus 303 D~Vlm~e~A~~sVisPEgaAsIl~rd 328 (773)
|+.++=--|.+...-|-.||..+..+
T Consensus 231 D~ti~D~vAd~ra~TPtaaae~~~p~ 256 (432)
T TIGR00237 231 DFTISDFVADLRAPTPSAAAEIVSPN 256 (432)
T ss_pred CccHHHHhhhccCCCcHHHHHHhCcc
Confidence 55444444666677788788777654
No 312
>COG1160 Predicted GTPases [General function prediction only]
Probab=34.89 E-value=45 Score=38.92 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=39.7
Q ss_pred EECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHH
Q 004120 195 SMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLR 274 (773)
Q Consensus 195 rI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ 274 (773)
|+-|+++.|+...+|.+. .+ ....|+=.+.+ +.+|||+|...+...+-..+. -...+.
T Consensus 22 RL~g~r~AIV~D~pGvTR-Dr------------------~y~~~~~~~~~-f~lIDTgGl~~~~~~~l~~~i--~~Qa~~ 79 (444)
T COG1160 22 RLTGRRIAIVSDTPGVTR-DR------------------IYGDAEWLGRE-FILIDTGGLDDGDEDELQELI--REQALI 79 (444)
T ss_pred HHhCCeeeEeecCCCCcc-CC------------------ccceeEEcCce-EEEEECCCCCcCCchHHHHHH--HHHHHH
Confidence 566889999999998432 22 22345556777 889999999876533322222 233445
Q ss_pred HHhCCCC
Q 004120 275 TMFGLKV 281 (773)
Q Consensus 275 ams~l~V 281 (773)
++..+.+
T Consensus 80 Ai~eADv 86 (444)
T COG1160 80 AIEEADV 86 (444)
T ss_pred HHHhCCE
Confidence 5555544
No 313
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.78 E-value=1.1e+03 Score=30.46 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHHH
Q 004120 700 IQALEQQIKQRLSEAVNSSELKEKHEEL 727 (773)
Q Consensus 700 Ie~l~~~I~~~ie~a~~ss~lk~k~E~L 727 (773)
+.+|+++|.-.++.+.|-+--=-||-+|
T Consensus 506 ~kel~~r~~aaqet~yDrdqTI~KfRel 533 (1243)
T KOG0971|consen 506 RKELQKRVEAAQETVYDRDQTIKKFREL 533 (1243)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4677888888888888766532333333
No 314
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=34.75 E-value=56 Score=33.65 Aligned_cols=59 Identities=22% Similarity=0.456 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHH
Q 004120 615 EIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSD-LKDMIELLKLEIA 686 (773)
Q Consensus 615 Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~-ik~kiE~LK~Eva 686 (773)
-+.++|+..|..|...|+..+ .+++.+|..|+.+|.+ +|++.+... ||+|...|..|+.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~------------~eL~~eI~~L~~~i~~-le~~~~~~k~LrnKa~~L~~eL~ 161 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTK------------NELEDEIKQLEKEIQR-LEEIQSKSKTLRNKANWLESELE 161 (171)
T ss_dssp --------HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777666 2334467777777754 677776665 8888877777765
No 315
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=34.36 E-value=5.8e+02 Score=26.91 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhH
Q 004120 560 AKLKQEINKKFE 571 (773)
Q Consensus 560 ~~Lk~Ei~~~~~ 571 (773)
++|+++|+..+.
T Consensus 37 ~~l~~~i~~~l~ 48 (302)
T PF10186_consen 37 EELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHH
Confidence 345555555554
No 316
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=34.31 E-value=8.4e+02 Score=28.75 Aligned_cols=103 Identities=19% Similarity=0.373 Sum_probs=64.5
Q ss_pred ChHHHHHHHHHHHH----------HHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhcc
Q 004120 602 EDDLKEKLVETKKE----------IESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINS 671 (773)
Q Consensus 602 ~~~Lkeki~k~k~E----------f~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~ 671 (773)
+......|..++.| |...+..-+.++.-++..++ .++-.++...-+.-++.=|.+++..-+.++..
T Consensus 150 ~~~~~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k----~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltk 225 (426)
T smart00806 150 NKEQRAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFK----SSSLSASGSSNRAYVESSKKKLSEDSDSLLTK 225 (426)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhccCCCcchHHHHHhHHHHHHHHHHHHHH
Confidence 34445555555554 44444444555555555444 23222333344666777888888888888875
Q ss_pred c-hhHHHHHHHHHHHHhhCCCCChhh----HHHHHHHHHHHH
Q 004120 672 S-DLKDMIELLKLEIAKAGKKPDVKS----KCKIQALEQQIK 708 (773)
Q Consensus 672 ~-~ik~kiE~LK~Evakag~~p~~~~----k~KIe~l~~~I~ 708 (773)
- ||..-||.|+.-|+.-|..|.+.- .+=|+.++++++
T Consensus 226 VDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~ 267 (426)
T smart00806 226 VDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELK 267 (426)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5 599999999999999999996542 233555555555
No 317
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=33.67 E-value=6.5e+02 Score=28.18 Aligned_cols=14 Identities=43% Similarity=0.591 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhhc
Q 004120 721 KEKHEELMAEISDA 734 (773)
Q Consensus 721 k~k~E~Lk~e~a~a 734 (773)
+++..++..+|+++
T Consensus 245 ~~~k~e~~~~I~~a 258 (312)
T smart00787 245 TNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 318
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=33.48 E-value=3.8e+02 Score=26.57 Aligned_cols=87 Identities=29% Similarity=0.405 Sum_probs=51.4
Q ss_pred hHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHH
Q 004120 535 SLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKK 614 (773)
Q Consensus 535 ~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~ 614 (773)
++|.....++.+++.... ....++.|+++++ -|++-+.+|+.|+.+- .||+ |+.|+++=
T Consensus 40 ~~~~~~~~lk~~~ki~~~--Qr~~l~~l~~~l~----------~l~~eL~~Lr~~~l~r-----RPLt---k~dVeeLV- 98 (126)
T PF07028_consen 40 SQKKLLEELKNLSKIQES--QRSELKELKQELD----------VLSKELQALRKEYLER-----RPLT---KEDVEELV- 98 (126)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHc-----CCCC---HHHHHHHH-
Confidence 455555666666644322 1223555555554 3677788888888854 4554 44444332
Q ss_pred HHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHh
Q 004120 615 EIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDV 668 (773)
Q Consensus 615 Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~ 668 (773)
-.++++ |.-.....+.|-+|+.++++.|
T Consensus 99 ------------------------~~IseQ--PK~IEkQte~LteEL~kkV~~V 126 (126)
T PF07028_consen 99 ------------------------LRISEQ--PKFIEKQTEALTEELTKKVDRV 126 (126)
T ss_pred ------------------------HHHHhC--cHHHHHHHHHHHHHHHHHHhcC
Confidence 334444 2245568889999999998764
No 319
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=33.25 E-value=41 Score=40.94 Aligned_cols=188 Identities=19% Similarity=0.265 Sum_probs=114.5
Q ss_pred HcCCCHHHHHHHHHHHHhhccCCCCCCCCCCcccccccccCCCCCCCCChhhhHHHHHHHHHHHHHhhhcCC-CC-CchH
Q 004120 385 LGKMDTQELLKHRNLKFRKIGGFQEGIPIDPKKKVNMKKKEGPIASKTSKEKLEDEVEKLKQQILKAKESST-KP-PDAA 462 (773)
Q Consensus 385 L~~l~~~~l~~~R~~k~r~~G~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 462 (773)
|..+.+.++-..||+.-.. |.|.++.-||+--.|=..|..+ -+.+|++-|-+=|.+|.-..+ .. .+..
T Consensus 280 ~D~lTPReIS~~RY~qhHE---WMEEI~sSPY~i~qI~P~DLGL-------GrKGEL~sLTeGiF~ap~~~~~~~~~~~~ 349 (669)
T PF08549_consen 280 FDHLTPREISKMRYQQHHE---WMEEILSSPYRISQIEPVDLGL-------GRKGELESLTEGIFEAPGGQSGDASKEGP 349 (669)
T ss_pred cccCCHHHHHHHHHHHHHH---HHHHHHhCccccccccccccCC-------ccccchhhhhcccccCCCCCCccccccCC
Confidence 4456788887788877543 6789999999987776666555 577899999999999943211 11 1112
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHH
Q 004120 463 LNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQGLASAPNYASLKYKLDM 542 (773)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~ 542 (773)
-.-.+-||.-+.-.||++.| .+++..+..|+.| +|.+=.|-++.|+++ --||+.-..
T Consensus 350 ~~~~~gkLdp~~aeeF~kRV-----~~~ia~~~AEIek-----------mK~~Hak~m~k~k~~-------s~lk~AE~~ 406 (669)
T PF08549_consen 350 KKPYVGKLDPGKAEEFRKRV-----AKKIADMNAEIEK-----------MKARHAKRMAKFKRN-------SLLKDAEKE 406 (669)
T ss_pred CcccccCCCHHHHHHHHHHH-----HHHHHHHHHHHHH-----------HHHHHHHHHHHHhhc-------cHHHHHHHH
Confidence 23567899999999999987 4688888877654 334444444455442 346666666
Q ss_pred hhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 004120 543 LKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELID 622 (773)
Q Consensus 543 ~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~ 622 (773)
|+.....+..- .-|| -+|.-|++.- .....++....+.-.|.||+.+-.|++
T Consensus 407 LR~a~~~p~~~-------------G~E~------WRlEGrl~~~----~ee~~~~~~~~~~k~k~~VDDIV~eVE----- 458 (669)
T PF08549_consen 407 LRDAVEDPSET-------------GPEI------WRLEGRLDTP----DEEDESPVEQSENKPKYKVDDIVAEVE----- 458 (669)
T ss_pred HHhccCCcccc-------------Cccc------eeecccccCC----ccCCCCcccccCccccccHHHHHHHHH-----
Confidence 66555433111 1111 1222233211 111122222234445778888888877
Q ss_pred HHhhcCcchHHhh
Q 004120 623 GLESLGLDVEVVK 635 (773)
Q Consensus 623 ~~~sl~~~~~~l~ 635 (773)
+++|-++..++
T Consensus 459 --~slGrkiV~~~ 469 (669)
T PF08549_consen 459 --KSLGRKIVPVP 469 (669)
T ss_pred --HHhCCeeeecc
Confidence 67777777665
No 320
>CHL00067 rps2 ribosomal protein S2
Probab=32.93 E-value=37 Score=36.02 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=31.9
Q ss_pred EEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 004120 191 TGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 253 (773)
Q Consensus 191 tGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpG 253 (773)
.|+-.....|-.||..|+.. -..++.-|.+.|+|+|+++||..
T Consensus 153 ~Gi~~m~~~P~~iiv~d~~~--------------------~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 153 GGIKYMTKLPDIVIIIDQQE--------------------EYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred ccccccccCCCEEEEeCCcc--------------------cHHHHHHHHHcCCCEEEEEeCCC
Confidence 45555666787788777641 12677889999999999999865
No 321
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=32.42 E-value=1.5e+02 Score=30.80 Aligned_cols=86 Identities=22% Similarity=0.307 Sum_probs=51.1
Q ss_pred HHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHh
Q 004120 562 LKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKEL 641 (773)
Q Consensus 562 Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~ 641 (773)
|..=+.+-|.-++++-.+|-.++.+|.++. ..+.+-|++-+.=-|+|+..+++.|.
T Consensus 63 f~nll~~a~k~~~~a~~~Kse~~~~r~~L~------------------l~FI~sf~~Y~~leL~s~~~ei~~L~------ 118 (181)
T PF04645_consen 63 FNNLLLQAFKSNAEARNAKSELEMERSNLE------------------LSFIDSFNQYKNLELKSIKKEIEILR------ 118 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHh------------------hHHHHHHHHhhhhhHHHHHHHHHHHH------
Confidence 444455666666666666666666666543 23555565555444666665555444
Q ss_pred hhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 004120 642 SEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIA 686 (773)
Q Consensus 642 ~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Eva 686 (773)
.||..|+.+||++=+.+ +++.++-||.|+.
T Consensus 119 ----------~kI~~L~~~in~~~k~~-----~n~~i~slk~EL~ 148 (181)
T PF04645_consen 119 ----------LKISSLQKEINKNKKKD-----LNEEIESLKSELN 148 (181)
T ss_pred ----------HHHHHHHHHhhhhhhhh-----hhhhHHHHHHHHH
Confidence 57777888888776543 4455666666554
No 322
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=32.25 E-value=3.3e+02 Score=34.17 Aligned_cols=168 Identities=20% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhcCC------CCCchHHHHHHHHHHH---HHhHHHHHHHHHc---------CcHHHHHHHHHHhc
Q 004120 438 EDEVEKLKQQILKAKESST------KPPDAALNVMIQKLKK---EVDHEFSEAAKAM---------GMQEKFATLRAEFS 499 (773)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 499 (773)
|.|+.-||+|+-.+--.-. ..-+.+|++-..+|.. |.+|-+.+|+... .|+.+|..+..++.
T Consensus 23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~ 102 (769)
T PF05911_consen 23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLA 102 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHhhccCCCCCh--------------hhHHHHHHHhhhhccccccchhHHHHHHHHHH
Q 004120 500 KGNSRDQLMDPILMDKITELKNEFNQGLASAPNY--------------ASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQE 565 (773)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~--------------~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~E 565 (773)
++.+.|.-+.-.|-+|=.-|.+--..+-.+--++ .+|||.+.++. +.=.|-...+|
T Consensus 103 ~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~----------keleir~~E~~ 172 (769)
T PF05911_consen 103 ESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLS----------KELEIRNEERE 172 (769)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Q ss_pred HHHHhHHhhcCcchH--HHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHH--HhhcCcchHHh
Q 004120 566 INKKFEEVICRPDIK--EKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDG--LESLGLDVEVV 634 (773)
Q Consensus 566 i~~~~~ea~~~~~lk--ek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~--~~sl~~~~~~l 634 (773)
.+.+.-++...--+. .|+.+|.+|++ +|+-=+..+|..+ +..|+++|+++
T Consensus 173 ~~~~~ae~a~kqhle~vkkiakLEaEC~-------------------rLr~l~rk~lpgpaa~a~mk~ev~~~ 226 (769)
T PF05911_consen 173 YSRRAAEAASKQHLESVKKIAKLEAECQ-------------------RLRALVRKKLPGPAALAQMKNEVESL 226 (769)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHhccCCChHHHHHhHHHHHHh
No 323
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=32.20 E-value=5.5e+02 Score=32.01 Aligned_cols=70 Identities=24% Similarity=0.480 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHhhccch----hHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHH
Q 004120 653 KMENLNEEINKKIEDVINSSD----LKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELM 728 (773)
Q Consensus 653 k~~~l~~ei~kkie~~~~~~~----ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~Lk 728 (773)
.+-+|+++|++++++-|+..- |+++|.+++.|+ |...| ....+ ++++++|+.+==+.+.+++++.-.
T Consensus 203 e~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eL---g~~~~--~~~~~----~~~~~k~~~~~~~~~~~~~~~~e~ 273 (775)
T TIGR00763 203 ELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKEL---GIEKD--DKDEL----EKLKEKLEELKLPEEVKKVIEKEL 273 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCCCC--chhHH----HHHHHHHHhcCCCHHHHHHHHHHH
Confidence 455689999999999888653 999999999988 43222 22234 355555655555566777766555
Q ss_pred HHH
Q 004120 729 AEI 731 (773)
Q Consensus 729 ~e~ 731 (773)
..+
T Consensus 274 ~~~ 276 (775)
T TIGR00763 274 TKL 276 (775)
T ss_pred HHH
Confidence 544
No 324
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.12 E-value=1.8e+02 Score=35.41 Aligned_cols=87 Identities=23% Similarity=0.326 Sum_probs=54.3
Q ss_pred ChhHHhhhcCCCCCCc-hhhhhhhhhh---hheeccCCCCC---CCCCceEEEEEE--ECCeEEEEEEeecCCCcccccc
Q 004120 147 TPIQRVNIARHPNRPT-FLDHVFNITE---KFVELHGDRAG---YDDPAIVTGIGS--MDGRTYMFMGHQKGRNTKENIQ 217 (773)
Q Consensus 147 t~weRV~l~Rdp~RP~-~~d~I~~l~D---dF~EL~gd~~~---~dD~aVVtGlAr--I~GrpV~VIa~dkg~~~~e~~~ 217 (773)
.+++++.-.-+|-+-. +.=-|..+-. .|+++...+.+ +-|||+.||+|- ++|..+-+.+...
T Consensus 204 A~re~l~g~V~~m~~~Dv~V~I~pV~r~rief~pl~~~r~~lIVGIDPGiTtgiAvldldGevl~~~S~r~--------- 274 (652)
T COG2433 204 APRERLPGVVKPMRGGDVQVRIEPVERDRIEFVPLRPERRSLIVGIDPGITTGIAVLDLDGEVLDLESRRG--------- 274 (652)
T ss_pred cChhhhhhhcccccCCceEEEEEEhhhcccccccCcccccceEEEeCCCceeeEEEEecCCcEEeeecccc---------
Confidence 5677777444443322 1111222221 47777665542 458999999996 5888877665442
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 004120 218 RNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 253 (773)
Q Consensus 218 ~ngG~~~peg~rKA~R~m~lAekf~LPIVtLIDTpG 253 (773)
+.+ ..++++...+|.|+|.=.|...
T Consensus 275 -----~~~------~eVve~I~~lG~PvvVAtDVtp 299 (652)
T COG2433 275 -----IDR------SEVVEFISELGKPVVVATDVTP 299 (652)
T ss_pred -----CCH------HHHHHHHHHcCCceEEEccCCC
Confidence 222 2677888899999999999754
No 325
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=32.04 E-value=4.2e+02 Score=27.94 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 004120 578 DIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELI 621 (773)
Q Consensus 578 ~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~ 621 (773)
-++.+|..++.++... +...+.++.+++..|.
T Consensus 17 C~~~~L~~~~~~l~~~------------~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 17 CVNNRLLELRSELQQL------------KEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 3556788888887754 5666666666666665
No 326
>PRK11546 zraP zinc resistance protein; Provisional
Probab=31.00 E-value=2.7e+02 Score=27.98 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=48.6
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHH
Q 004120 597 SFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKD 676 (773)
Q Consensus 597 ~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~ 676 (773)
....|+|+=..++.++.++|..+....=..|--|-.-|+ .+.. ++ ..=.+||.+|.+||..=-. .|-+
T Consensus 40 ~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELn----ALl~-~~-~pD~~kI~aL~kEI~~Lr~------kL~e 107 (143)
T PRK11546 40 NAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYN----ALLT-AN-PPDSSKINAVAKEMENLRQ------SLDE 107 (143)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHc-CC-CCCHHHHHHHHHHHHHHHH------HHHH
Confidence 355799999999999999999887766444433333222 2222 12 2224567777777753211 2222
Q ss_pred HHHHHHHHHHhhCC
Q 004120 677 MIELLKLEIAKAGK 690 (773)
Q Consensus 677 kiE~LK~Evakag~ 690 (773)
+--.+-.|++|.|.
T Consensus 108 ~r~~~~~~~~k~Gv 121 (143)
T PRK11546 108 LRVKRDIAMAEAGI 121 (143)
T ss_pred HHHHHHHHHHHcCC
Confidence 33356677777765
No 327
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=30.85 E-value=7.9e+02 Score=27.41 Aligned_cols=56 Identities=32% Similarity=0.404 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCC
Q 004120 436 KLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNS 503 (773)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (773)
++..|.-.+.+++.... .-...|..|.|+=-+|--++.+..++|..|--|+-+.|.
T Consensus 33 ell~e~k~~~k~~~~~~------------Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk 88 (309)
T PF09728_consen 33 ELLEEMKRLQKQLKKLQ------------KKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNK 88 (309)
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544433 334556667777777777888999999999888887763
No 328
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=30.79 E-value=1.4e+02 Score=27.11 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhhccCC----CCChhhHHHHHHH
Q 004120 487 MQEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQGLAS----APNYASLKYKLDM 542 (773)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~n~~~Lk~ki~~ 542 (773)
|++.|..|+.|+. ++.++++..+..+..|+++....|.. +.+-++|-.++..
T Consensus 2 L~~~L~~L~~eL~----~~~~ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~ 57 (85)
T PF14357_consen 2 LQELLEKLHQELE----QNPPLDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNE 57 (85)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 5677788888887 34557788888888888877777665 2334455554444
No 329
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=30.71 E-value=1e+03 Score=29.35 Aligned_cols=23 Identities=17% Similarity=0.456 Sum_probs=17.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcc
Q 004120 649 NFRSKMENLNEEINKKIEDVINS 671 (773)
Q Consensus 649 ~~~~k~~~l~~ei~kkie~~~~~ 671 (773)
.++.+++.|++.|.+++..++++
T Consensus 320 ~l~~qi~~l~~~i~~e~~~~~~~ 342 (754)
T TIGR01005 320 AAKSSLADLDAQIRSELQKITKS 342 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888877654
No 330
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=30.57 E-value=1.1e+03 Score=28.81 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=74.8
Q ss_pred HhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhhc--cCCCCChhhHHHHHHHhhhhccccc
Q 004120 474 VDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQG--LASAPNYASLKYKLDMLKEFSNAKS 551 (773)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~n~~~Lk~ki~~~ke~s~~~~ 551 (773)
+.+|=.+.-.----.+++..||.++.--...--..-|.|-.+++++-.+|+|- |...+||--=..=|..+++-..+.
T Consensus 131 v~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L- 209 (570)
T COG4477 131 VESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIAL- 209 (570)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH-
Confidence 33333333333334577888888887554444456689999999999999984 778889876666666666544322
Q ss_pred cchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004120 552 LLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIE 617 (773)
Q Consensus 552 ~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~ 617 (773)
...-+.|=.|=.|+.+.++.=+. +|+.=+..+++ .....-|-.+...+..++..+.
T Consensus 210 -~~~~e~IP~L~~e~~~~lP~ql~--~Lk~Gyr~m~~-------~gY~l~~~~id~~~~~L~~~l~ 265 (570)
T COG4477 210 -RSIMERIPSLLAELQTELPGQLQ--DLKAGYRDMKE-------EGYHLEHVNIDSRLERLKEQLV 265 (570)
T ss_pred -HHHHHHHHHHHHHHHhhchHHHH--HHHHHHHHHHH-------ccCCcccccHHHHHHHHHHHHH
Confidence 11223344455555555542221 23333333333 2344444455555555555544
No 331
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=30.56 E-value=1.1e+03 Score=28.99 Aligned_cols=64 Identities=19% Similarity=0.326 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHcC--cHHHHHHHHHHhccCCCC-CCCCChH--HHHHHHHHHHHHhhcc
Q 004120 463 LNVMIQKLKKEVDHEFSEAAKAMG--MQEKFATLRAEFSKGNSR-DQLMDPI--LMDKITELKNEFNQGL 527 (773)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~ 527 (773)
|.++|++|..|-|+ |.+.++--+ +++|+..+-+++...... ++.++.+ |...|.+|+.......
T Consensus 2 l~e~l~qlq~Erd~-ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 2 LMESLKQLQAERDQ-YAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 56788999988876 666665443 578888777777766333 5555553 5667777777665544
No 332
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=30.49 E-value=1.1e+02 Score=34.58 Aligned_cols=69 Identities=19% Similarity=0.296 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHH
Q 004120 554 DSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEV 633 (773)
Q Consensus 554 ~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~ 633 (773)
++.+...+||+|++ .|+-|++.|++|+.++.-+..+.+.++--++|.|.++=+...+. ++..+++++.
T Consensus 36 aLr~EN~~LKkEN~----------~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~Re~vl--fq~d~~~ld~ 103 (420)
T PF07407_consen 36 ALRMENHSLKKENN----------DLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKMRELVL--FQRDDLKLDS 103 (420)
T ss_pred hHHHHhHHHHHHHH----------HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh--hccccccccH
Confidence 44444555666665 36667777777777665555666666666666666665422111 4555555544
Q ss_pred h
Q 004120 634 V 634 (773)
Q Consensus 634 l 634 (773)
+
T Consensus 104 ~ 104 (420)
T PF07407_consen 104 V 104 (420)
T ss_pred H
Confidence 3
No 333
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.20 E-value=2.4e+02 Score=27.79 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHH
Q 004120 617 ESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSD-LKDMIELLKLEIA 686 (773)
Q Consensus 617 ~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~-ik~kiE~LK~Eva 686 (773)
...|+.|..+++..|+-|. +.+..-|+++.++|+.|-..=| ..+-.++.+.||.
T Consensus 38 rr~m~~A~~~v~kql~~vs----------------~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~ 92 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVS----------------ESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVT 92 (126)
T ss_pred HHhHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3568888888888888776 2345556666666666644333 4444444444443
No 334
>PF15294 Leu_zip: Leucine zipper
Probab=30.13 E-value=1.4e+02 Score=33.01 Aligned_cols=95 Identities=24% Similarity=0.304 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccch---hHHHHHHHHHHHH---HH---hHHhhcCcch
Q 004120 509 DPILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLD---SKNKAAKLKQEIN---KK---FEEVICRPDI 579 (773)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~---~~~~~~~Lk~Ei~---~~---~~ea~~~~~l 579 (773)
+|.|...|.+|++|= .+||.++..+..-+. ....+ +...+..|..+.. .+ +..+-+-.+|
T Consensus 127 ~~ll~kEi~rLq~EN----------~kLk~rl~~le~~at-~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dL 195 (278)
T PF15294_consen 127 SELLNKEIDRLQEEN----------EKLKERLKSLEKQAT-SALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDL 195 (278)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhH
Confidence 355888888888773 467777776664442 11111 1112222222110 11 2334444567
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHH
Q 004120 580 KEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKE 615 (773)
Q Consensus 580 kek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~E 615 (773)
..+|.+++.|+.++ ..+...--..|++.+.-.|.|
T Consensus 196 E~k~a~lK~e~ek~-~~d~~~~~k~L~e~L~~~Khe 230 (278)
T PF15294_consen 196 ENKMAALKSELEKA-LQDKESQQKALEETLQSCKHE 230 (278)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888877 333333334444444444433
No 335
>PF13166 AAA_13: AAA domain
Probab=29.85 E-value=1.1e+03 Score=28.63 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=21.2
Q ss_pred CC-CCChHHHHHHHH-HHHHHHH---HHHHHHhhcCc
Q 004120 598 FS-DLEDDLKEKLVE-TKKEIES---ELIDGLESLGL 629 (773)
Q Consensus 598 ~~-~l~~~Lkeki~k-~k~Ef~~---~l~~~~~sl~~ 629 (773)
.| ++++++++++.+ +.++++. +|......+..
T Consensus 262 ~q~~l~~~~~~~l~~~f~~~~~~~~~~l~~~~~~~~~ 298 (712)
T PF13166_consen 262 QQEPLSEERKERLEKYFDEEYEKLIEELEKAIKKLEK 298 (712)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 699999999998 5666554 44444433433
No 336
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.79 E-value=2.8e+02 Score=32.44 Aligned_cols=150 Identities=19% Similarity=0.253 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhhccCCCCChhhHHHH
Q 004120 460 DAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQGLASAPNYASLKYK 539 (773)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~Lk~k 539 (773)
+.+|..|+++|.+|... .--+||++-.+| .+++.+|- | |-+++-|.+
T Consensus 60 NEdLk~~~e~lr~~~~~---d~~~am~~v~~L------------e~~~~npk---------------~---~~~E~~k~~ 106 (580)
T KOG3705|consen 60 NEDLKSILEKLRQERND---DHKKAMEQVHQL------------EPNPENPK---------------L---PKPEPVKEI 106 (580)
T ss_pred hHHHHHHHHHHhccccc---chhhHHHHHhhC------------CCCcCCcC---------------c---CCCCchHHH
Confidence 45688999999888632 224566665554 45666665 1 333344444
Q ss_pred HHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004120 540 LDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESE 619 (773)
Q Consensus 540 i~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~ 619 (773)
|. .+..+. ++|+||..-+..-+++|=+--|..|+-|.++.... +|.+-+. +|=.+
T Consensus 107 ~r-------~~n~lg----------~~dhE~~rRri~~~i~E~w~fl~Sel~kvr~~~~~----dl~e~~~----~~LL~ 161 (580)
T KOG3705|consen 107 IR-------KPNILG----------PVDHEVQRRRIDDRIREMWYFLHSELGKVRKAASA----DLIENST----KILLE 161 (580)
T ss_pred hc-------CCccCC----------CccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhh----hHHhhHH----HHHHh
Confidence 43 232222 15566666666678888888889998887765433 3444444 45555
Q ss_pred HHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccch
Q 004120 620 LIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSD 673 (773)
Q Consensus 620 l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ 673 (773)
+++--.||.-+...|. .++ .+..--..+...|-+-+.++|+-+-|-.|
T Consensus 162 ~~~h~rSlm~d~~~l~-----q~d-G~e~wR~Kea~dlt~lvqrri~~LQNPkd 209 (580)
T KOG3705|consen 162 TAEHMRSLMGDSAQLE-----QLD-GSEEWRFKEATDLTQLVQRRIEKLQNPKD 209 (580)
T ss_pred hHHHHHHHHhHHHHHH-----hcc-CcHHHHHhHHhHHHHHHHHHHHHhcChHh
Confidence 5555666655555444 111 11111122344466777777776655433
No 337
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.00 E-value=1.6e+02 Score=31.03 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=4.8
Q ss_pred hHHHHHHHHHHH
Q 004120 720 LKEKHEELMAEI 731 (773)
Q Consensus 720 lk~k~E~Lk~e~ 731 (773)
++.+.+.|+.++
T Consensus 151 ~~~~~~~l~~~~ 162 (206)
T PRK10884 151 AQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 338
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=28.76 E-value=19 Score=43.92 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhHHHHHHHHH
Q 004120 439 DEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKA 484 (773)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (773)
.|+-+|=+=||-+.-.. |-....=.-|..|-.++-+.+-.++..
T Consensus 109 ~El~kLL~LlLgcAV~c--~~ke~yI~~I~~Ld~~~Q~~im~~Iqe 152 (713)
T PF05622_consen 109 EELKKLLQLLLGCAVQC--ENKEEYIQRIMELDESTQHAIMEAIQE 152 (713)
T ss_dssp HHHHHHHHHHHHHTTSS--STHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcC--ccHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57888888888887654 444555556666666777766666543
No 339
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.65 E-value=7.2e+02 Score=29.28 Aligned_cols=71 Identities=25% Similarity=0.330 Sum_probs=36.6
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcc-hHHHHHHHHHHHhh
Q 004120 518 ELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPD-IKEKMEAIKAKLQD 592 (773)
Q Consensus 518 ~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~-lkek~~~lk~E~~k 592 (773)
+|.+.|++.-+.--.|-+-|..=- +-.-+-+..+.-|+.+|++..+.=-+-.|..|+ |++.++.++.=+++
T Consensus 188 sl~kd~~~~~~l~~e~n~~k~s~~----s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k 259 (446)
T KOG4438|consen 188 SLLKDFNQQMSLLAEYNKMKKSST----SEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQK 259 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 455566665544444433322110 001233344555677777777766666666663 55555555554444
No 340
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=28.59 E-value=6.5e+02 Score=25.68 Aligned_cols=19 Identities=42% Similarity=0.555 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004120 605 LKEKLVETKKEIESELIDG 623 (773)
Q Consensus 605 Lkeki~k~k~Ef~~~l~~~ 623 (773)
++++.+++..|.+..|..+
T Consensus 77 ~~~eA~~~~~eye~~L~~A 95 (181)
T PRK13454 77 LKQKAVEAEKAYNKALADA 95 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444
No 341
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=28.52 E-value=1.1e+03 Score=28.23 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=12.5
Q ss_pred CcEEEEEcCCCccchhh
Q 004120 281 VPIISIVIGEGGSGGAL 297 (773)
Q Consensus 281 VP~ISVViGeg~GGGAl 297 (773)
-|-++||+|+.++|=..
T Consensus 21 ~~g~~vitG~nGaGKS~ 37 (563)
T TIGR00634 21 ERGLTVLTGETGAGKSM 37 (563)
T ss_pred CCCeEEEECCCCCCHHH
Confidence 36688899998887443
No 342
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=28.34 E-value=6.8e+02 Score=27.14 Aligned_cols=37 Identities=30% Similarity=0.517 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHH---HHhHHhhcCcchHHH-HHHHHHHHhh
Q 004120 556 KNKAAKLKQEIN---KKFEEVICRPDIKEK-MEAIKAKLQD 592 (773)
Q Consensus 556 ~~~~~~Lk~Ei~---~~~~ea~~~~~lkek-~~~lk~E~~k 592 (773)
|+.+++||+..+ +.++|.=..-+.++| ++.++..+..
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777766 555544444443332 3344443333
No 343
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=28.09 E-value=6.2e+02 Score=30.32 Aligned_cols=115 Identities=18% Similarity=0.283 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhh---hHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhccc------h
Q 004120 603 DDLKEKLVETKKEIESELIDGLESLGLDVEVVK---SKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSS------D 673 (773)
Q Consensus 603 ~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~---sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~------~ 673 (773)
++|...|.++-++++.--.+++..+.-+..-.- +.++.+.+ ++..|..||+.-.+..++++ +
T Consensus 10 edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~---------~~~~l~~eI~d~l~~~~~~~i~~~l~~ 80 (593)
T PF06248_consen 10 EDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIE---------RSKSLAREINDLLQSEIENEIQPQLRD 80 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---------HHHHHHHHHHHHHHhhccchhHHHHHH
Q ss_pred hHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHH
Q 004120 674 LKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMA 729 (773)
Q Consensus 674 ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~Lk~ 729 (773)
--++++.|+.|++..-. -.+.-++|..+.+.+ +.+..++..-.+-.=.+.|..
T Consensus 81 a~~e~~~L~~eL~~~~~--~l~~L~~L~~i~~~l-~~~~~al~~~~~~~Aa~~L~~ 133 (593)
T PF06248_consen 81 AAEELQELKRELEENEQ--LLEVLEQLQEIDELL-EEVEEALKEGNYLDAADLLEE 133 (593)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHhcCCHHHHHHHHHH
No 344
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.99 E-value=2.3e+02 Score=28.22 Aligned_cols=55 Identities=25% Similarity=0.492 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHHHHHHH
Q 004120 652 SKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKP-DVKSKCKIQALEQQIKQ 709 (773)
Q Consensus 652 ~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p-~~~~k~KIe~l~~~I~~ 709 (773)
+.+..+..+|+.--+++ ..++..+-.|.+|++.-.++| ..+....|+.|+++|.+
T Consensus 72 eel~~ld~ei~~L~~el---~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~ 127 (169)
T PF07106_consen 72 EELAELDAEIKELREEL---AELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEE 127 (169)
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 45666676666655555 568888888999999888877 55668888888888764
No 345
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=27.96 E-value=1e+03 Score=28.91 Aligned_cols=89 Identities=21% Similarity=0.296 Sum_probs=51.6
Q ss_pred ChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHH---HHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCC
Q 004120 433 SKEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLK---KEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMD 509 (773)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (773)
+..+|..+++.|+.|+-+- ++-.+.+.|++|=+.+. .+|+.= ...+..|++--+. -.-.+
T Consensus 249 ~~~~id~~~~~L~~~l~~~---~~~l~~Leld~aeeel~~I~e~ie~l-------------Yd~lE~EveA~~~-V~~~~ 311 (570)
T COG4477 249 EHVNIDSRLERLKEQLVEN---SELLTQLELDEAEEELGLIQEKIESL-------------YDLLEREVEAKNV-VEENL 311 (570)
T ss_pred ccccHHHHHHHHHHHHHHH---HhHHHHhhhhhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH-HHhcC
Confidence 5578899999999999843 33567777877755542 222221 2233334332221 12235
Q ss_pred hHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhcc
Q 004120 510 PILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSN 548 (773)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~ 548 (773)
|.|.+.++++++. -..||.+|...+++..
T Consensus 312 ~~l~~~l~k~ke~----------n~~L~~Eie~V~~sY~ 340 (570)
T COG4477 312 PILPDYLEKAKEN----------NEHLKEEIERVKESYR 340 (570)
T ss_pred cchHHHHHHHHHH----------HHHHHHHHHHHHHHhc
Confidence 6677777776653 3456666666666664
No 346
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.92 E-value=1.5e+03 Score=29.78 Aligned_cols=84 Identities=20% Similarity=0.257 Sum_probs=41.4
Q ss_pred cCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCC--CCCCChH
Q 004120 527 LASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASS--FSDLEDD 604 (773)
Q Consensus 527 ~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~--~~~l~~~ 604 (773)
|..+.|+..++.+|...+ +..-...+...+++.+|.+.=++...--+ +.+..-.|+....-.. .=.|.++
T Consensus 292 i~~ke~~~~~k~rl~~~~-----k~i~~~kk~~~~~~~~ie~~ek~l~av~~---~~~~fekei~~~~q~rg~~lnl~d~ 363 (1141)
T KOG0018|consen 292 IKVKENASHLKKRLEEIE-----KDIETAKKDYRALKETIERLEKELKAVEG---AKEEFEKEIEERSQERGSELNLKDD 363 (1141)
T ss_pred hhcchhhccchhHHHHhh-----hhHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccccCCcchH
Confidence 334444444444444433 22222233334456666555554433333 4444445555442212 3567777
Q ss_pred HHHHHHHHHHHHHH
Q 004120 605 LKEKLVETKKEIES 618 (773)
Q Consensus 605 Lkeki~k~k~Ef~~ 618 (773)
..+.-..++.|...
T Consensus 364 ~~~ey~rlk~ea~~ 377 (1141)
T KOG0018|consen 364 QVEEYERLKEEACK 377 (1141)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777888877543
No 347
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=27.72 E-value=63 Score=38.34 Aligned_cols=47 Identities=28% Similarity=0.321 Sum_probs=29.0
Q ss_pred CCcEEEEecCCCCCCCHhHHHhch----------------HHHHHHHHHHHhCCCCcEEEEEc
Q 004120 242 GFPIVTFIDTPGAYADLKSEELGQ----------------GEAIAHNLRTMFGLKVPIISIVI 288 (773)
Q Consensus 242 ~LPIVtLIDTpGA~~g~~AEe~Gq----------------a~aIAr~L~ams~l~VP~ISVVi 288 (773)
+.|.|+|+||||-..=.....+|. ....-..+.-+..++||+|..+.
T Consensus 53 ~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiN 115 (509)
T COG0532 53 KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAIN 115 (509)
T ss_pred CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEe
Confidence 789999999999433222333432 22333344455667899987764
No 348
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=27.69 E-value=7.6e+02 Score=26.20 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHhH
Q 004120 555 SKNKAAKLKQEINKKFE 571 (773)
Q Consensus 555 ~~~~~~~Lk~Ei~~~~~ 571 (773)
..+.|.+|++.|+.+..
T Consensus 39 i~e~i~~Le~~l~~E~k 55 (247)
T PF06705_consen 39 IKEQIQKLEKALEAEVK 55 (247)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555444
No 349
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=27.57 E-value=2.1e+03 Score=31.30 Aligned_cols=255 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhhcCC------CCCchHHHHHHHHHH--------------------HHHhHHHHHHHHHcCcHH
Q 004120 436 KLEDEVEKLKQQILKAKESST------KPPDAALNVMIQKLK--------------------KEVDHEFSEAAKAMGMQE 489 (773)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~ 489 (773)
...+++++-|..|++-++.+- .+++..-.++-++.+ +++..++-.-+.-.|--+
T Consensus 776 ~e~d~L~~YK~~I~Ekkn~y~~~lnvdn~ke~e~Kq~Yek~ke~~~~is~KE~EIsk~Ine~k~~~~~~~~kln~Y~~~e 855 (2757)
T TIGR01612 776 KEKDELNKYKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFE 855 (2757)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhHHHHHHhhhhhhhHH
Q ss_pred H------------HHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhhccCCCC----ChhhHHHHHHHhhhhccccccc
Q 004120 490 K------------FATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQGLASAP----NYASLKYKLDMLKEFSNAKSLL 553 (773)
Q Consensus 490 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----n~~~Lk~ki~~~ke~s~~~~~~ 553 (773)
+ +..|.+- .-.-.+.+++.++..+||..=+..- ..+++.+-|+-+|-.-..+-..
T Consensus 856 k~~kenidse~~~~~~L~ek---------Ik~e~s~~kLn~yE~eFnd~ks~V~~t~k~IE~~~KnIdtlK~LN~~In~c 926 (2757)
T TIGR01612 856 NNCKEKIDSEHEQFAELTNK---------IKAEISDDKLNDYEKKFNDSKSLINEINKSIEEEYQNINTLKKVDEYIKIC 926 (2757)
T ss_pred HHhhhccchhHHHHHHHHHH---------HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q ss_pred hhHH--------HHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHH-H
Q 004120 554 DSKN--------KAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDG-L 624 (773)
Q Consensus 554 ~~~~--------~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~-~ 624 (773)
+... +...|+.+++|.+. ++... ++=+..-..-|-..+..-+.+++..|.++ +
T Consensus 927 ~~~kesI~~~~nkk~~LkekL~k~I~-----------------~I~~~-~~Iek~~t~~ll~~L~dkk~~i~~~l~e~sL 988 (2757)
T TIGR01612 927 ENTKESIEKFHNKQNILKEILNKNID-----------------TIKES-NLIEKSYKDKFDNTLIDKINELDKAFKDASL 988 (2757)
T ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHH-----------------HHhcc-CchhHHHHHHHHHHHHHHHHHHHHhccHhhH
Q ss_pred hhcCcchHHhh---hHHHHhhhccccchhhhhHHHHH---HHHHHHHHHhhc---------cchhHHHHHHHHHHHHhhC
Q 004120 625 ESLGLDVEVVK---SKAKELSEQTSFSNFRSKMENLN---EEINKKIEDVIN---------SSDLKDMIELLKLEIAKAG 689 (773)
Q Consensus 625 ~sl~~~~~~l~---sk~k~~~~~~~~~~~~~k~~~l~---~ei~kkie~~~~---------~~~ik~kiE~LK~Evakag 689 (773)
-+|..+...|. ...|.....+..+-+-+++.+-+ ++|.++|+++=. -.-|.+-++...-++.
T Consensus 989 Ndletk~~~Ll~Yf~~~K~nl~~~~e~~~~~qlde~ek~~~dIk~ki~~lN~Ny~nie~~i~~sI~n~~eei~~~i~--- 1065 (2757)
T TIGR01612 989 NDYEAKNNELIKYFNDLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIYNIIDEIEKEIG--- 1065 (2757)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh---
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhCChh-hHHHHHHHH
Q 004120 690 KKPDVKSKCKIQALEQQIKQRLSEAVNSSE-LKEKHEELM 728 (773)
Q Consensus 690 ~~p~~~~k~KIe~l~~~I~~~ie~a~~ss~-lk~k~E~Lk 728 (773)
.-|+.++.+|.+++..-|++=. +|+|...+.
T Consensus 1066 --------k~I~~~~~eI~ekv~~ni~~LneIK~KL~~~~ 1097 (2757)
T TIGR01612 1066 --------KNIELLNKEILEEAEINITNFNEIKEKLKHYN 1097 (2757)
T ss_pred --------hhhhhhhHHHHHHHHHHhhhHHHHHHHHhccc
No 350
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=27.44 E-value=1.3e+02 Score=34.11 Aligned_cols=53 Identities=23% Similarity=0.294 Sum_probs=38.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhCCh
Q 004120 649 NFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSS 718 (773)
Q Consensus 649 ~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~ss 718 (773)
+++.+-..||+|++ +|+.|+|.|++|+-++.. -+|++- +|.+-++|..+||..
T Consensus 36 aLr~EN~~LKkEN~----------~Lk~eVerLE~e~l~s~V------~E~vet-~dv~~d~i~Kimnk~ 88 (420)
T PF07407_consen 36 ALRMENHSLKKENN----------DLKIEVERLENEMLRSHV------CEDVET-NDVIYDKIVKIMNKM 88 (420)
T ss_pred hHHHHhHHHHHHHH----------HHHHHHHHHHHHhhhhhh------hhHHHH-HHHHHHHHHHHHHHH
Confidence 67777788888875 588899999999987655 344443 455667777777764
No 351
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=27.18 E-value=7.4e+02 Score=25.94 Aligned_cols=19 Identities=5% Similarity=0.155 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHhHHh
Q 004120 555 SKNKAAKLKQEINKKFEEV 573 (773)
Q Consensus 555 ~~~~~~~Lk~Ei~~~~~ea 573 (773)
..+++++=++.|...+.+|
T Consensus 78 I~~vLe~R~~~I~~~L~~A 96 (204)
T PRK09174 78 IGGIIETRRDRIAQDLDQA 96 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555533
No 352
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=27.10 E-value=2.5e+02 Score=24.41 Aligned_cols=51 Identities=24% Similarity=0.247 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhC
Q 004120 653 KMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVN 716 (773)
Q Consensus 653 k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~ 716 (773)
+-.++++.|....+++ +++++.+..++... .+++++++-+++++++.++++
T Consensus 23 sG~e~R~~l~~~~~~~------~~~~~~~~~~~~~~-------~k~~~~~~~~~~~e~~~e~~d 73 (74)
T PF12732_consen 23 SGKETREKLKDKAEDL------KDKAKDLYEEAKEK-------VKEKAEETADEAKEKAKELKD 73 (74)
T ss_pred CcHHHHHHHHHHHHHH------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhh
Confidence 4556777777777744 44444444333311 466666666666666666554
No 353
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=26.80 E-value=8.5e+02 Score=28.91 Aligned_cols=162 Identities=15% Similarity=0.270 Sum_probs=97.4
Q ss_pred cccchHhHHHHHHHHHhhhhhcCCChHHH-H-----HHHHHHHHHhhhhhcCCCChhHHhhhcCCC------CCCc--hh
Q 004120 99 FEKPLVGLSKKIMDVRKMANDTGLDFSDQ-I-----VSLENKYQQALKDLYTHLTPIQRVNIARHP------NRPT--FL 164 (773)
Q Consensus 99 FEkPIvel~~ki~~l~~la~~~giDlseE-I-----q~LE~KleeL~kdI~~~Lt~weRV~l~Rdp------~RP~--~~ 164 (773)
|-..+.++.++|-+++..-+ -.+|++++ + ..+..++..+..++-..|.-+++-.+.|+. ++|. -.
T Consensus 153 ls~~i~~lr~~li~~~a~vE-a~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKS 231 (454)
T COG0486 153 LSQLINELREALLELLAQVE-ANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKS 231 (454)
T ss_pred HHHHHHHHHHHHHHHHHHhe-EeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHH
Confidence 56667777777777665432 34666665 2 223344444444454455667777777775 6776 35
Q ss_pred hhhhhhhhh----heeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHHHHHHHHHHhhh
Q 004120 165 DHVFNITEK----FVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADH 240 (773)
Q Consensus 165 d~I~~l~Dd----F~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~rKA~R~m~lAek 240 (773)
-++..+... ...+.|+ .+-+|-+.-.++|.||-++=.--=|.|... +--.|-+++...++.|+
T Consensus 232 SLLNaL~~~d~AIVTdI~GT-----TRDviee~i~i~G~pv~l~DTAGiRet~d~-------VE~iGIeRs~~~i~~AD- 298 (454)
T COG0486 232 SLLNALLGRDRAIVTDIAGT-----TRDVIEEDINLNGIPVRLVDTAGIRETDDV-------VERIGIERAKKAIEEAD- 298 (454)
T ss_pred HHHHHHhcCCceEecCCCCC-----ccceEEEEEEECCEEEEEEecCCcccCccH-------HHHHHHHHHHHHHHhCC-
Confidence 567776652 2233332 245788888899999998866544444333 33567888888888888
Q ss_pred cCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEc
Q 004120 241 HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVI 288 (773)
Q Consensus 241 f~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVVi 288 (773)
=|++++|......... .. + ......+.|+|-|+.
T Consensus 299 ---lvL~v~D~~~~~~~~d---~~----~----~~~~~~~~~~i~v~N 332 (454)
T COG0486 299 ---LVLFVLDASQPLDKED---LA----L----IELLPKKKPIIVVLN 332 (454)
T ss_pred ---EEEEEEeCCCCCchhh---HH----H----HHhcccCCCEEEEEe
Confidence 3888899765422111 11 1 114445678887664
No 354
>PHA03332 membrane glycoprotein; Provisional
Probab=26.75 E-value=3.2e+02 Score=35.45 Aligned_cols=59 Identities=12% Similarity=0.258 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhh
Q 004120 605 LKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVI 669 (773)
Q Consensus 605 Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~ 669 (773)
+|++|..+++-++ .++.+...+|..+..+.......+++.. .+|..|..|+|.+|-.+-
T Consensus 896 mksaIg~tNaAV~-~lsDai~klGnti~kisatl~~nI~avN-----gRIs~Led~VN~r~~~v~ 954 (1328)
T PHA03332 896 MASKIGGLNARVD-KTSDVITKLGDTIAKISATLDNNIRAVN-----GRVSDLEDQVNLRFLAVA 954 (1328)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHhhHHHhc-----ccHHHHHHHHHHHHHHHH
Confidence 6666666665554 4666677788888877755555554322 588999999999998773
No 355
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=26.47 E-value=1.3e+03 Score=28.64 Aligned_cols=109 Identities=21% Similarity=0.310 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCC----CC--
Q 004120 436 KLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQL----MD-- 509 (773)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-- 509 (773)
-+.+.+++...=|.+|++ .+..+.+-| .+|| .|+ -||..|=+.-..+..+.|. .+
T Consensus 33 a~~~~~~qi~~Wi~k~k~--------~l~~L~~~l-~~ID----~ai------~~~l~lIe~~v~~ie~~q~r~di~~~~ 93 (683)
T PF08580_consen 33 ALSGAAEQILDWIQKAKD--------VLYGLREGL-EEID----SAI------SRFLDLIEVYVSAIEDLQLREDIANSL 93 (683)
T ss_pred hhHHHHHHHHHHHHHHHH--------HHHHHHHhH-HHHH----HHH------HHHHHHHHhhccccccccccccccccH
Confidence 345677777777888875 244443333 2333 333 2455555555555444442 22
Q ss_pred hHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhh
Q 004120 510 PILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVI 574 (773)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~ 574 (773)
-.|.+.+.++..+... ..-.+|+|++-+=|+-.. .+.-+..|..||+.=+.-++
T Consensus 94 ~dl~e~vsqm~~~vK~------~L~~vK~qveiAmE~~EL-----~~~vlg~l~~EIe~~~~~vf 147 (683)
T PF08580_consen 94 FDLIEEVSQMELDVKK------TLISVKKQVEIAMEWEEL-----WNDVLGDLDNEIEECIRLVF 147 (683)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 1133333344332222 233455555555544421 24456778888887665443
No 356
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=26.28 E-value=1.6e+02 Score=31.05 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=30.7
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhh
Q 004120 231 ALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGAL 297 (773)
Q Consensus 231 A~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAl 297 (773)
..+++++.++-+..--.+|.+|=-+.+.. | .=..+...++|.|++.=..|+|.=|.
T Consensus 134 L~~l~eli~~g~~~PalVIg~PVGFV~A~-E----------SKe~L~~~~iP~It~~GrkGGS~vAa 189 (203)
T PRK05954 134 LLALCQQIRAGRVKPSLVIGVPVGFVSVV-E----------AKQALAQLDVPQIRVEGRKGGSPVAA 189 (203)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCcccCHH-H----------HHHHHHhCCCCEEEEecCCCcHHHHH
Confidence 34555665554444444667775555521 1 11223346799999777776554333
No 357
>PTZ00440 reticulocyte binding protein 2-like protein; Provisional
Probab=26.20 E-value=2.3e+03 Score=31.23 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHhhCCCCChhhHHH-HHHHHHHHHHHHHHHhCChhhHHHHHHH
Q 004120 651 RSKMENLNEEINKKIEDVIN--SSDLKDMIELLKLEIAKAGKKPDVKSKCK-IQALEQQIKQRLSEAVNSSELKEKHEEL 727 (773)
Q Consensus 651 ~~k~~~l~~ei~kkie~~~~--~~~ik~kiE~LK~Evakag~~p~~~~k~K-Ie~l~~~I~~~ie~a~~ss~lk~k~E~L 727 (773)
+.+++.|.++|..+.+.+-+ +..|..-+..|+.|+... .++|.- +...-+-|.+.|...+| .++.++..|
T Consensus 661 ~e~le~ll~~ik~ey~Ki~~mk~d~i~~~l~~lk~el~~l-----~~lKk~I~k~~~~~i~~~m~~~ln--~~~~k~~~L 733 (2722)
T PTZ00440 661 KEDLQTLLNTSKNEYEKLEFMKSDNIDNIIKNLKKELQNL-----LSLKENIIKKQLNNIEQDISNSLN--QYTIKYNDL 733 (2722)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 67888888888888877643 455888888888876531 122221 33333345555555544 257777777
Q ss_pred HHHH
Q 004120 728 MAEI 731 (773)
Q Consensus 728 k~e~ 731 (773)
+.-+
T Consensus 734 ~~~i 737 (2722)
T PTZ00440 734 KSSI 737 (2722)
T ss_pred HHHH
Confidence 7666
No 358
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=26.08 E-value=3.1e+02 Score=25.50 Aligned_cols=66 Identities=27% Similarity=0.444 Sum_probs=43.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhhc------cchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhCChhhHH
Q 004120 649 NFRSKMENLNEEINKKIEDVIN------SSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKE 722 (773)
Q Consensus 649 ~~~~k~~~l~~ei~kkie~~~~------~~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~ss~lk~ 722 (773)
+++.+++...+|+++.++.|.+ ++.=-.||-+||--- ..-...+|..|+.+++. |..
T Consensus 1 ~l~~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksY-------e~rwek~v~~L~~e~~~----------l~~ 63 (87)
T PF12709_consen 1 DLKKKLEESQKEVEKAVEKVARELHALYSSKHETKVKALKKSY-------EARWEKKVDELENENKA----------LKR 63 (87)
T ss_pred CHHhHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHH----------HHH
Confidence 3567888999999999999987 344445667776311 12356778888777764 344
Q ss_pred HHHHHHHHH
Q 004120 723 KHEELMAEI 731 (773)
Q Consensus 723 k~E~Lk~e~ 731 (773)
.+|.|+.++
T Consensus 64 E~e~L~~~l 72 (87)
T PF12709_consen 64 ENEQLKKKL 72 (87)
T ss_pred HHHHHHHHH
Confidence 455555544
No 359
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=25.90 E-value=2.4e+02 Score=28.32 Aligned_cols=66 Identities=30% Similarity=0.473 Sum_probs=34.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhccchhH----HHHHHHHHHHHh--hCCCCChhh-H-------HHHHHHHHHHHHHHH
Q 004120 647 FSNFRSKMENLNEEINKKIEDVINSSDLK----DMIELLKLEIAK--AGKKPDVKS-K-------CKIQALEQQIKQRLS 712 (773)
Q Consensus 647 ~~~~~~k~~~l~~ei~kkie~~~~~~~ik----~kiE~LK~Evak--ag~~p~~~~-k-------~KIe~l~~~I~~~ie 712 (773)
.|.+..|+++|...+++||+.+ +|+=| +-+...+.=.+. +|.+|+.+. + .+..+|-+.++..|+
T Consensus 53 sP~L~~k~~~l~~~~k~ki~~L--~peak~Fv~~li~~~~~l~~~~~~G~~~~~~~lk~~~k~~~~~ykaLs~~ak~dL~ 130 (154)
T PF05823_consen 53 SPSLYEKAEKLRDKLKKKIDKL--SPEAKAFVKELIAKARSLYAQYSAGEKPDLEELKQLAKKVIDSYKALSPEAKDDLK 130 (154)
T ss_dssp -HHHHHHHHHHHHHHHHTTTT----HHHHHHHHHHHHHHHHHHHHHHHT----THHHHHHH----HHHHTS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhHHHHHcCCHHHHHHHH
Confidence 4588889999999999999988 66643 333332211222 577776542 2 224455555555555
Q ss_pred HH
Q 004120 713 EA 714 (773)
Q Consensus 713 ~a 714 (773)
..
T Consensus 131 k~ 132 (154)
T PF05823_consen 131 KN 132 (154)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 360
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.89 E-value=7.6e+02 Score=29.81 Aligned_cols=177 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHHHHH
Q 004120 440 EVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKITEL 519 (773)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (773)
|++|+|..|-.-++ -++.|++|+.|+---.-++-.---.+..+..++-++.+--+......-.|.++.+
T Consensus 306 eL~K~kde~~~n~~---------~~~lie~lq~el~~al~~c~eeN~~~t~~n~e~~~lq~~etek~ee~tlla~~~d-- 374 (613)
T KOG0992|consen 306 ELEKAKDEIKQNDD---------KVKLIEELQDELSVALKECREENKIETQVNFERNKLQNEETEKKEEKTLLAAADD-- 374 (613)
T ss_pred HHHHHHHHHhccch---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH--
Q ss_pred HHHHhhccCCCCC-hhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCc-chHHHHHHHHHHHhhcCCCC
Q 004120 520 KNEFNQGLASAPN-YASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRP-DIKEKMEAIKAKLQDSGASS 597 (773)
Q Consensus 520 ~~~~~~~~~~~~n-~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~-~lkek~~~lk~E~~ka~~s~ 597 (773)
+|...++-+-. .+.||.+.-.-+ .+ ..+.|..|+.|+++.-.....-. .|---=..+..-.+-+++|+
T Consensus 375 --r~se~~e~teqkleelk~~f~a~q----~K----~a~tikeL~~El~~yrr~i~~~~s~ia~~~~e~pqq~s~sRSsS 444 (613)
T KOG0992|consen 375 --RFSEYSELTEQKLEELKVQFTAKQ----EK----HAETIKELEIELEEYRRAILRNASEIAQYEDELPQQLSLSRSSS 444 (613)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHhccccccccCCCCccchhhhhhccccc
Q ss_pred CCCCC---------------------------hHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhhhHHHHhhhccccchh
Q 004120 598 FSDLE---------------------------DDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNF 650 (773)
Q Consensus 598 ~~~l~---------------------------~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~sk~k~~~~~~~~~~~ 650 (773)
...+| .+|.++|+.+..+ +..+|.
T Consensus 445 s~s~~tr~s~e~r~ss~agssa~~v~~~qqDka~lierivrLQ~a-------------------------~arkne---- 495 (613)
T KOG0992|consen 445 SGSQETRNSQEVRDSSEAGSSAQQVSSPQQDKADLIERIVRLQLA-------------------------IARKNE---- 495 (613)
T ss_pred ccchhhchhhhhcchhhhhhhhhhcCchhhhhHHHHHHHHHHHHH-------------------------HHHhhh----
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 004120 651 RSKMENLNEEINKKIEDV 668 (773)
Q Consensus 651 ~~k~~~l~~ei~kkie~~ 668 (773)
|++-|++-+-+=+++|
T Consensus 496 --kiefLe~h~~qlveev 511 (613)
T KOG0992|consen 496 --KIEFLEQHLIQLVEEV 511 (613)
T ss_pred --HhHHHHHHHHHHHHHH
No 361
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=25.82 E-value=5.7e+02 Score=28.18 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhcc
Q 004120 221 GMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIG 300 (773)
Q Consensus 221 G~~~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g 300 (773)
|.-=.......-.+...|.+.++|.|.+-|. |-- .|++ .+...+......+ +.|+.+ .
T Consensus 154 G~~I~~~~a~~D~lf~~a~~~gi~tigIGDG-GNE-------iGMG-~v~~~v~~~i~~g-~~ia~~------------v 211 (291)
T PF14336_consen 154 GEDISHLVAPLDDLFLAAKEPGIPTIGIGDG-GNE-------IGMG-NVKEAVKKHIPNG-DKIACV------------V 211 (291)
T ss_pred CCcCccccccHHHHHHHhhcCCCCEEEECCC-chh-------cccC-hHHHHHHHhCCCC-CceEEe------------e
Confidence 4333333556677888888899999999995 333 3332 3444554444332 222211 1
Q ss_pred ccceeeeecCCeeeeeCHHHHHHHhhh--hccCchHHHHHhcccHHHHHHcCCceeeecCC
Q 004120 301 CANKLLMLENAVFYVASPEACAAILWK--SAKASPKAAEKLKITGSELCKLQIADGVIPEP 359 (773)
Q Consensus 301 ~aD~Vlm~e~A~~sVisPEgaAsIl~r--d~~~a~eaAe~lkitA~dL~~lGiVD~IIpE~ 359 (773)
.||+++..--+.|+-.+--++.+++.. ......+. ....-+.+.++|.+|+|..++
T Consensus 212 ~aD~liva~VSNWGayaL~a~l~~l~~~~~~l~~~~~---e~~~L~~lv~~G~vDGvt~~~ 269 (291)
T PF14336_consen 212 AADELIVAGVSNWGAYALAAALSLLSGWKNLLPSPEE---EEKLLEALVEAGAVDGVTGKP 269 (291)
T ss_pred ecceeeeCCCCChHHHHHHHHHHHhhcchhhcCChHH---HHHHHHHHHHcCCccCCcCCC
Confidence 266666665555544444444444332 11122211 112345588999999999776
No 362
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=24.63 E-value=97 Score=29.44 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhh
Q 004120 509 DPILMDKITELKNEFNQGLASAPNYASLKYKLDMLKE 545 (773)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke 545 (773)
.|.+|+-|-+++++|..-=+--|.|.++-||+.|+.-
T Consensus 35 S~~~KD~I~q~m~~F~dp~~G~pAF~s~~QQ~~mlq~ 71 (120)
T PRK15321 35 SETLKDSIYQEMNAFKDPNSGDSAFVSFEQQTAMLQN 71 (120)
T ss_pred cHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHH
Confidence 4789999999999999888899999999999998764
No 363
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=24.51 E-value=1.6e+02 Score=31.34 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=30.9
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhh
Q 004120 231 ALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGAL 297 (773)
Q Consensus 231 A~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAl 297 (773)
..+++++.++-+..--.+|.+|=-+.+.. | .=..+...++|.|++.=..|+|.=|.
T Consensus 145 L~~l~~li~~g~~~PalVIG~PVGFV~Aa-E----------sKe~L~~~~iP~It~~GrkGGS~vAa 200 (214)
T PRK08286 145 LFRLLEMVEHGQLQVDAVVGVPVGFVGAA-E----------SKEALTESDLPAIAALGRKGGSNVAA 200 (214)
T ss_pred HHHHHHHHHcCCCCCcEEEEeCCccccHH-H----------HHHHHHhCCCCEEEEecCCCcHHHHH
Confidence 34555555555555555666665555521 1 11222346799999777776554333
No 364
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.42 E-value=7.6e+02 Score=25.44 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=12.9
Q ss_pred CCCChhhHHHHHHHhhh
Q 004120 529 SAPNYASLKYKLDMLKE 545 (773)
Q Consensus 529 ~~~n~~~Lk~ki~~~ke 545 (773)
+.|+|..+|..+++|.+
T Consensus 12 ~d~eF~e~~eyi~~L~~ 28 (200)
T cd07624 12 RSPEFDKMNEYLTLFGE 28 (200)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 56778888888888774
No 365
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=24.40 E-value=4.7e+02 Score=25.30 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=13.2
Q ss_pred CCChhhHHHHHHHHHHHHH
Q 004120 691 KPDVKSKCKIQALEQQIKQ 709 (773)
Q Consensus 691 ~p~~~~k~KIe~l~~~I~~ 709 (773)
||-.++..+|++|++|+.+
T Consensus 83 ~~~~~l~~rvd~Lerqv~~ 101 (108)
T COG3937 83 SEMDELTERVDALERQVAD 101 (108)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 5556777777887777653
No 366
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=24.39 E-value=8.6e+02 Score=25.74 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHhhcCcchHHhhhHHHHhhhc
Q 004120 604 DLKEKLVETKKEIE--SELIDGLESLGLDVEVVKSKAKELSEQ 644 (773)
Q Consensus 604 ~Lkeki~k~k~Ef~--~~l~~~~~sl~~~~~~l~sk~k~~~~~ 644 (773)
-|.+.|..+++... +.+..-++.+.-+++-|++-++.+-++
T Consensus 40 ~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~ 82 (193)
T PF14662_consen 40 QLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEE 82 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433 123333555666666666555544443
No 367
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=23.98 E-value=1.6e+03 Score=28.58 Aligned_cols=241 Identities=20% Similarity=0.280 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHH---------hHHHHHHHHHc----CcHHHHHHHHHHhccCCC
Q 004120 437 LEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEV---------DHEFSEAAKAM----GMQEKFATLRAEFSKGNS 503 (773)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 503 (773)
+...++++..+|-..+ -.-...++-|++|...+ ..+...+...+ .-..+|..+.++..+...
T Consensus 133 lr~~lE~~q~~~e~~q-----~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~ 207 (775)
T PF10174_consen 133 LRKTLEELQLRIETQQ-----QTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHM 207 (775)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred CC---------CCCChHHHHHHHHHHHHHhhccCCC-CChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHh
Q 004120 504 RD---------QLMDPILMDKITELKNEFNQGLASA-PNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEV 573 (773)
Q Consensus 504 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea 573 (773)
.- ..-+|...+-+.++-++=+...++. -+...|...|.+++.-....+. +.+.-.+.|..+=..--.
T Consensus 208 ~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~-~r~~~~k~le~~~s~~~~-- 284 (775)
T PF10174_consen 208 EAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEA-DRDRLDKQLEVYKSHSLA-- 284 (775)
T ss_pred hhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHHHHHHHHHHHhhHHH--
Q ss_pred hcCcchHHHHHHHHHHHhhcC---------CCCCCCCChHHHHHHHHHHHHHHHHHHHH---HhhcCcchHHhh---hHH
Q 004120 574 ICRPDIKEKMEAIKAKLQDSG---------ASSFSDLEDDLKEKLVETKKEIESELIDG---LESLGLDVEVVK---SKA 638 (773)
Q Consensus 574 ~~~~~lkek~~~lk~E~~ka~---------~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~---~~sl~~~~~~l~---sk~ 638 (773)
+|.||+.++-|+++.. .-+-..-+.+.+.-|+.++.+ |.+. +.-|.-+|+-|. -..
T Consensus 285 -----mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkes----l~~ke~~~~~Lqsdve~Lr~rle~k 355 (775)
T PF10174_consen 285 -----MKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKES----LRAKEQEAEMLQSDVEALRFRLEEK 355 (775)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHH
Q 004120 639 KELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQR 710 (773)
Q Consensus 639 k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ 710 (773)
...+++.. .-++.+++|.+.-=-++ .+++++++....+|. -+..|||.|+.+.+.+
T Consensus 356 ~~~l~kk~-----~~~~~~qeE~~~~~~Ei---~~l~d~~d~~e~ki~--------~Lq~kie~Lee~l~ek 411 (775)
T PF10174_consen 356 NSQLEKKQ-----AQIEKLQEEKSRLQGEI---EDLRDMLDKKERKIN--------VLQKKIENLEEQLREK 411 (775)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
No 368
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=23.95 E-value=40 Score=35.36 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccc
Q 004120 230 KALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSG 294 (773)
Q Consensus 230 KA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GG 294 (773)
-..+++++.++-++..-.+|.+|=-+.+.. ..=..+...++|.|++.=..|+|.
T Consensus 131 AL~~ll~li~~~~~~PalVIg~PVGFV~A~-----------ESKe~L~~~~vP~I~~~G~kGGS~ 184 (198)
T PF02570_consen 131 ALFELLELIEEGGVRPALVIGVPVGFVGAA-----------ESKEALMQSGVPYITVRGRKGGSP 184 (198)
T ss_dssp HHHHHHHHHHTTT-TTSEEEE---SSSSHH-----------HHHHHHHHSTS-EEEESSS---HH
T ss_pred HHHHHHHHHHhcCCCCcEEEECCCcccCcH-----------HHHHHHHhCCCCEEEEecCCCCHH
Confidence 345666777666666666677775555521 222334445899998555554443
No 369
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=23.91 E-value=1.8e+02 Score=30.17 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=26.9
Q ss_pred hhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhH
Q 004120 534 ASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFE 571 (773)
Q Consensus 534 ~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ 571 (773)
..|..||.+|+.-++.....++|+.++-||.|+|..+.
T Consensus 115 ~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iK 152 (181)
T PF04645_consen 115 EILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIK 152 (181)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777776655
No 370
>PRK05575 cbiC precorrin-8X methylmutase; Validated
Probab=23.89 E-value=1.6e+02 Score=31.17 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=27.5
Q ss_pred HHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccc
Q 004120 232 LRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSG 294 (773)
Q Consensus 232 ~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GG 294 (773)
.+++++.++-+..--.+|.+|=-+.+.. | .=..+...++|.|++.=..|+|.
T Consensus 140 ~~l~~li~~g~~~PalVIG~PVGFV~A~-E----------SKe~L~~~~vP~It~~G~kGGS~ 191 (204)
T PRK05575 140 YKLKELIKEGKANPKFIIAVPVGFVGAA-E----------SKEELEKLDIPYITVRGRKGGST 191 (204)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCccccHH-H----------HHHHHHhCCCCEEEEecCCCcHH
Confidence 4455555544443344556664444421 1 11223446899999776665554
No 371
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=23.71 E-value=3e+02 Score=31.44 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=21.9
Q ss_pred HHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHH
Q 004120 665 IEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRL 711 (773)
Q Consensus 665 ie~~~~~~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~i 711 (773)
.++++.++.=.++.|..+.||. +.+.+|+.|+++++.-|
T Consensus 65 a~~~l~~~~D~em~ema~~Ei~--------~~~~~~~~le~~L~~lL 103 (363)
T COG0216 65 AKEMLAEEKDPEMREMAEEEIK--------ELEAKIEELEEELKILL 103 (363)
T ss_pred HHHHHhccCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhc
Confidence 3444443333344445556665 45777888887776543
No 372
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=23.63 E-value=8.5e+02 Score=25.41 Aligned_cols=18 Identities=6% Similarity=0.062 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004120 606 KEKLVETKKEIESELIDG 623 (773)
Q Consensus 606 keki~k~k~Ef~~~l~~~ 623 (773)
++...++..|.+..|+.+
T Consensus 95 ~~eA~~~l~e~e~~L~~A 112 (205)
T PRK06231 95 KQQAQQLLENAKQRHENA 112 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444555555444
No 373
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=23.43 E-value=2.8e+02 Score=32.67 Aligned_cols=100 Identities=21% Similarity=0.319 Sum_probs=57.6
Q ss_pred CCeEEEEEEeecCCCcc--------c--cccccCCCC-CHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHHHh--
Q 004120 197 DGRTYMFMGHQKGRNTK--------E--NIQRNFGMP-TPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEEL-- 263 (773)
Q Consensus 197 ~GrpV~VIa~dkg~~~~--------e--~~~~ngG~~-~peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~-- 263 (773)
.|+.|++|+.|--|..- + ++.+ ||.- +..-..-|.+.++.|...+.= |.+|||.| +...+.+--
T Consensus 127 ~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~-f~~~~~~~Pv~Iak~al~~ak~~~~D-vvIvDTAG-Rl~ide~Lm~E 203 (451)
T COG0541 127 KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF-FGSGTEKDPVEIAKAALEKAKEEGYD-VVIVDTAG-RLHIDEELMDE 203 (451)
T ss_pred cCCceEEEecccCChHHHHHHHHHHHHcCCce-ecCCCCCCHHHHHHHHHHHHHHcCCC-EEEEeCCC-cccccHHHHHH
Confidence 57899999998655321 1 1222 3332 223345667778888776654 45689999 445432210
Q ss_pred ------------------chHHHHHHHHHHHhCCCCcEEEEEc----CCCccchhhhc
Q 004120 264 ------------------GQGEAIAHNLRTMFGLKVPIISIVI----GEGGSGGALAI 299 (773)
Q Consensus 264 ------------------Gqa~aIAr~L~ams~l~VP~ISVVi----Geg~GGGAlA~ 299 (773)
...+.-|.+.+.-..-.+|+-+||+ |-+=|||||.+
T Consensus 204 l~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDGdaRGGaALS~ 261 (451)
T COG0541 204 LKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDGDARGGAALSA 261 (451)
T ss_pred HHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEcccCCCcchHHHhh
Confidence 0112234444444444567666665 88889999975
No 374
>PRK12677 xylose isomerase; Provisional
Probab=23.43 E-value=5.3e+02 Score=29.49 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhcCCcEEEEe-c-------CCCCCCCHhHHHhch-HHHHHHHHHHHhCCCCcEEEEEcCC
Q 004120 230 KALRMMYYADHHGFPIVTFI-D-------TPGAYADLKSEELGQ-GEAIAHNLRTMFGLKVPIISIVIGE 290 (773)
Q Consensus 230 KA~R~m~lAekf~LPIVtLI-D-------TpGA~~g~~AEe~Gq-a~aIAr~L~ams~l~VP~ISVViGe 290 (773)
...++.++++..|+.|.++. + ..|...+...+.+.. ...+-+++.....+++|+|+|..|.
T Consensus 68 ~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~ 137 (384)
T PRK12677 68 IIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGR 137 (384)
T ss_pred HHHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCC
Confidence 45566677788888877642 1 223333433333333 4556677777778889998887764
No 375
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=23.39 E-value=7.1e+02 Score=30.15 Aligned_cols=63 Identities=21% Similarity=0.410 Sum_probs=42.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHH
Q 004120 649 NFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELM 728 (773)
Q Consensus 649 ~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~Lk 728 (773)
++...+..|+..|+++|...|+. |++ +-++|.+||+||.+.-..=-+..+|-++.++|.
T Consensus 149 ~~~~~L~~l~~~i~~~I~~~V~~--vNs-------------------Ll~qIa~lN~qI~~~~~~g~~~NdLlDqRD~Lv 207 (552)
T COG1256 149 NTYEQLTDLRKDINAEIAATVDE--VNS-------------------LLKQIADLNKQIRKVKAAGNDPNDLLDQRDQLV 207 (552)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH--HHH-------------------HHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Confidence 45567778888888888765431 222 245788899999888222234455999999999
Q ss_pred HHHh
Q 004120 729 AEIS 732 (773)
Q Consensus 729 ~e~a 732 (773)
.|+.
T Consensus 208 ~eLs 211 (552)
T COG1256 208 DELS 211 (552)
T ss_pred HHHH
Confidence 9983
No 376
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.25 E-value=4.7e+02 Score=29.69 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHH
Q 004120 677 MIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLS 712 (773)
Q Consensus 677 kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie 712 (773)
.+..|+..+.+.....+.+..+.|++|+++|+..-.
T Consensus 47 rLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~ 82 (330)
T PF07851_consen 47 RLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRC 82 (330)
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHh
Confidence 345566666666555566778899999998887543
No 377
>PRK07480 putative aminotransferase; Validated
Probab=23.20 E-value=71 Score=36.91 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=40.2
Q ss_pred cccCCC-CCHHHHHHHHHHHHHhhhcCCcEEEEec--CCCC-CCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCc
Q 004120 217 QRNFGM-PTPHGYRKALRMMYYADHHGFPIVTFID--TPGA-YADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGG 292 (773)
Q Consensus 217 ~~ngG~-~~peg~rKA~R~m~lAekf~LPIVtLID--TpGA-~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~ 292 (773)
+-.+|+ +-|.+|-+.+| ++|+++|+++|+ | -.|+ +.|. . .+ ....+. .|=| +++|+|.
T Consensus 229 qg~gG~~~~~~~yl~~lr--~lc~~~g~llI~--DEV~tGfGRtG~-------~--~a---~~~~gv-~PDi-v~~gK~l 290 (456)
T PRK07480 229 QGAGGVIIPPATYWPEIQ--RICRKYDILLVA--DEVICGFGRTGE-------W--FG---SQHFGI-KPDL-MTIAKGL 290 (456)
T ss_pred cCCCCCccCCHHHHHHHH--HHHHHcCCEEEE--echhhCCCcCcc-------h--hh---hhhcCC-CCCe-eeeehhh
Confidence 345676 45777887776 899999998754 5 2354 3321 0 11 112233 5887 5789999
Q ss_pred cchhhhc
Q 004120 293 SGGALAI 299 (773)
Q Consensus 293 GGGAlA~ 299 (773)
|||.+.+
T Consensus 291 ~gG~~Pi 297 (456)
T PRK07480 291 TSGYIPM 297 (456)
T ss_pred ccCCccc
Confidence 9986433
No 378
>PRK03011 butyrate kinase; Provisional
Probab=23.02 E-value=2.4e+02 Score=31.91 Aligned_cols=68 Identities=21% Similarity=0.206 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhcCCcEEEEecCCCCC-CCHhHH------------Hhch-HHHHHHHHHHHhCC---CCcEEEEEcCCCc
Q 004120 230 KALRMMYYADHHGFPIVTFIDTPGAY-ADLKSE------------ELGQ-GEAIAHNLRTMFGL---KVPIISIVIGEGG 292 (773)
Q Consensus 230 KA~R~m~lAekf~LPIVtLIDTpGA~-~g~~AE------------e~Gq-a~aIAr~L~ams~l---~VP~ISVViGeg~ 292 (773)
-+...+++|.++++| +++.||+=.. +...+- .+|+ .+++++..+..... ..-.|.+-+|.|.
T Consensus 109 ~~~~a~~~~~~~~~p-~~v~D~~~~~~~~~~a~~~~lp~i~R~~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGi 187 (358)
T PRK03011 109 GAIIAYEIAKELGIP-AFIVDPVVVDEMEPVARISGLPEIERKSIFHALNQKAVARRVAKELGKKYEELNLIVAHLGGGI 187 (358)
T ss_pred HHHHHHHHHHhcCCC-EEEECCcccccCCHHHHHcCCCCcceeecchHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCc
Confidence 445666788888999 5788983211 111111 1122 34677777665533 3457888899999
Q ss_pred cchhhh
Q 004120 293 SGGALA 298 (773)
Q Consensus 293 GGGAlA 298 (773)
|+|++.
T Consensus 188 g~gai~ 193 (358)
T PRK03011 188 SVGAHR 193 (358)
T ss_pred eeeEEE
Confidence 988764
No 379
>PLN02939 transferase, transferring glycosyl groups
Probab=23.00 E-value=1.8e+03 Score=28.90 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=23.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhccCCCCCh-hhHHHHHHHhh
Q 004120 502 NSRDQLMDPILMDKITELKNEFNQGLASAPNY-ASLKYKLDMLK 544 (773)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~-~~Lk~ki~~~k 544 (773)
.++.+.-.-.|-+.+++|.+|.-++-...+-+ -.|-..+.-+|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (977)
T PLN02939 189 AAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLK 232 (977)
T ss_pred hhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHH
Confidence 33444445566777777777777665554422 22444444444
No 380
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=23.00 E-value=2.4e+02 Score=34.09 Aligned_cols=41 Identities=41% Similarity=0.486 Sum_probs=26.8
Q ss_pred cchhHHHHHH-HHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Q 004120 671 SSDLKDMIEL-LKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEEL 727 (773)
Q Consensus 671 ~~~ik~kiE~-LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a~~ss~lk~k~E~L 727 (773)
++.=|+|+|. ||-||. |.+.|..||| .-++|++||.|--+|
T Consensus 36 n~sqkeK~e~DLKkEIK------------KLQRlRdQIK----tW~ss~dIKDK~~L~ 77 (575)
T KOG2150|consen 36 NVSQKEKLESDLKKEIK------------KLQRLRDQIK----TWQSSSDIKDKDSLL 77 (575)
T ss_pred ChhHHHHHHHHHHHHHH------------HHHHHHHHHH----hhhcccccccHHHHH
Confidence 5556677664 666654 5556666655 567899999984433
No 381
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=22.79 E-value=1.8e+02 Score=29.82 Aligned_cols=16 Identities=44% Similarity=0.449 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHh
Q 004120 653 KMENLNEEINKKIEDV 668 (773)
Q Consensus 653 k~~~l~~ei~kkie~~ 668 (773)
..-+|+++|+|||+++
T Consensus 60 ~~~Kl~E~iekkieea 75 (175)
T COG4741 60 EEWKLKEWIEKKIEEA 75 (175)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445788888888655
No 382
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.67 E-value=1.6e+03 Score=28.37 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=9.3
Q ss_pred hhhhhHHHHHHHHHH
Q 004120 649 NFRSKMENLNEEINK 663 (773)
Q Consensus 649 ~~~~k~~~l~~ei~k 663 (773)
.+..+++++.+++++
T Consensus 658 ~~~~~~~~~~~~~~~ 672 (908)
T COG0419 658 ELEEKVEELEAEIRR 672 (908)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344566666666665
No 383
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.66 E-value=3.2e+02 Score=32.09 Aligned_cols=100 Identities=22% Similarity=0.304 Sum_probs=53.7
Q ss_pred CCeEEEEEEeecCCC----------ccccccccCCCCC-HHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCHhHH----
Q 004120 197 DGRTYMFMGHQKGRN----------TKENIQRNFGMPT-PHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSE---- 261 (773)
Q Consensus 197 ~GrpV~VIa~dkg~~----------~~e~~~~ngG~~~-peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~g~~AE---- 261 (773)
.|+.|++||-|-=|. ++.++.++ |+.+ ..-..-|...++-+.+.+.-|| ++||.|=--. +++
T Consensus 128 kG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y-gsyte~dpv~ia~egv~~fKke~fdvI-IvDTSGRh~q-e~sLfeE 204 (483)
T KOG0780|consen 128 KGYKVALVCADTFRAGAFDQLKQNATKARVPFY-GSYTEADPVKIASEGVDRFKKENFDVI-IVDTSGRHKQ-EASLFEE 204 (483)
T ss_pred cCCceeEEeecccccchHHHHHHHhHhhCCeeE-ecccccchHHHHHHHHHHHHhcCCcEE-EEeCCCchhh-hHHHHHH
Confidence 577888888775331 22233332 3322 2334445566677777777655 6899994332 222
Q ss_pred -------------------Hhch-HHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhc
Q 004120 262 -------------------ELGQ-GEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAI 299 (773)
Q Consensus 262 -------------------e~Gq-a~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~ 299 (773)
..|| +.+-|+.+..-...+--+|+=+=|.+-||||+..
T Consensus 205 M~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSa 262 (483)
T KOG0780|consen 205 MKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTKLDGHAKGGGALSA 262 (483)
T ss_pred HHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEecccCCCCCceeee
Confidence 1122 1233333444344444455555588889998854
No 384
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=22.65 E-value=1.6e+03 Score=28.20 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=32.4
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhH
Q 004120 517 TELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFE 571 (773)
Q Consensus 517 ~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ 571 (773)
..++..++..-.+++.+.+|+.+..-+.++..-+ +...+.|.-++-+..+
T Consensus 279 ~~l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~-----~~~~e~l~~~~~~~~~ 328 (698)
T KOG0978|consen 279 KLLKEYERELKDTESDNLKLRKQHSSAADSLESK-----SRDLESLLDKIQDLIS 328 (698)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhhccch-----hHHHHHHHHHHHHHHH
Confidence 3445567777789999999999999888776542 3333444444444443
No 385
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.59 E-value=1.2e+03 Score=26.87 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=20.9
Q ss_pred cchHHHHHHHHHHHhhcCC---CCCCCCChHHHHHHHHHHHHHH
Q 004120 577 PDIKEKMEAIKAKLQDSGA---SSFSDLEDDLKEKLVETKKEIE 617 (773)
Q Consensus 577 ~~lkek~~~lk~E~~ka~~---s~~~~l~~~Lkeki~k~k~Ef~ 617 (773)
.+++.++..|+.-+..... .........+..++.++..+..
T Consensus 221 ~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~ 264 (498)
T TIGR03007 221 NEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLD 264 (498)
T ss_pred HHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHH
Confidence 3566677777765443210 0112234566777776555533
No 386
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=22.43 E-value=6.6e+02 Score=26.70 Aligned_cols=112 Identities=20% Similarity=0.398 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhhcCCCCCCC-----------CChHHHHHHHHHHHHHHHHHHHH-HhhcCcchHHhhhHHHHhhhcc
Q 004120 578 DIKEKMEAIKAKLQDSGASSFSD-----------LEDDLKEKLVETKKEIESELIDG-LESLGLDVEVVKSKAKELSEQT 645 (773)
Q Consensus 578 ~lkek~~~lk~E~~ka~~s~~~~-----------l~~~Lkeki~k~k~Ef~~~l~~~-~~sl~~~~~~l~sk~k~~~~~~ 645 (773)
+|+..+..++.++... -...++ +++...+.+++..+++..+.... +-+++.+.- ......
T Consensus 96 ~l~~l~~~l~~~~~~~-~~~~~d~~~l~~~~~~~~~~~~~~e~e~~~e~lv~~s~g~i~~~l~~~m~-------~~~G~~ 167 (229)
T PF11101_consen 96 RLKQLMDQLKQQVDRR-FYQRGDGFVLHAQAFSQLDEFFDQEFEQAIEQLVQESMGSILQALGNEMG-------SSEGDQ 167 (229)
T ss_pred HHHHHHHHHHHHHHHH-heeCCCcEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCCCc
Q ss_pred ccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHH
Q 004120 646 SFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRL 711 (773)
Q Consensus 646 ~~~~~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~i 711 (773)
+...|..+++.|.+.|..+++ -...+|..+=+.|=.-+. .++.+++++.++|
T Consensus 168 ~l~~~~~~m~~l~~~ie~~~~--~q~~~le~~a~~lC~~l~------------~L~~~E~~L~~~I 219 (229)
T PF11101_consen 168 NLQAFEQRMEGLQQQIEQEME--AQAQELEQKAQALCDSLQ------------QLDQQEQQLQQRI 219 (229)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhc
No 387
>PRK11637 AmiB activator; Provisional
Probab=22.23 E-value=1.2e+03 Score=26.67 Aligned_cols=17 Identities=18% Similarity=0.345 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHh
Q 004120 435 EKLEDEVEKLKQQILKA 451 (773)
Q Consensus 435 ~~~~~~~~~~~~~~~~~ 451 (773)
.+++.+++.++++|-+.
T Consensus 43 ~~~~~~l~~l~~qi~~~ 59 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAK 59 (428)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 46777888888877543
No 388
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=22.19 E-value=3.4e+02 Score=23.44 Aligned_cols=31 Identities=16% Similarity=0.403 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 004120 650 FRSKMENLNEEINKKIEDVINSSDLKDMIELLKL 683 (773)
Q Consensus 650 ~~~k~~~l~~ei~kkie~~~~~~~ik~kiE~LK~ 683 (773)
++.+++.|+.+|.++..- .-...+++.++..
T Consensus 7 ~~~~l~~L~~~l~~E~~~---r~Gaenm~~~~~~ 37 (72)
T cd00089 7 LQSRLERLEKELSIELKV---KEGAENLLRLYSD 37 (72)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhc
Confidence 345777777777766542 1346666666554
No 389
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=22.13 E-value=2e+02 Score=32.52 Aligned_cols=67 Identities=21% Similarity=0.194 Sum_probs=42.0
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCC-CCCH--------hHHH----hch-HHHHHHHHHHHhCCCC---cEEEEEcCCCcc
Q 004120 231 ALRMMYYADHHGFPIVTFIDTPGA-YADL--------KSEE----LGQ-GEAIAHNLRTMFGLKV---PIISIVIGEGGS 293 (773)
Q Consensus 231 A~R~m~lAekf~LPIVtLIDTpGA-~~g~--------~AEe----~Gq-a~aIAr~L~ams~l~V---P~ISVViGeg~G 293 (773)
....+++|..+++|.+ +.||+=. .+.. +..+ +|. .+++++.+......+. -+|++.+|.|.|
T Consensus 108 ~~~~~~~~~~~~~p~~-vfDt~fh~~~~~~a~~~alpe~~RrygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGig 186 (351)
T TIGR02707 108 AIIANELADELNIPAY-IVDPVVVDEMEDVARISGLPEIERKSIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGIS 186 (351)
T ss_pred HHHHHHHHHHcCCCEE-EcCChhhhcChHHHHHhccchhhhhhchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCce
Confidence 5555666667799995 8898211 1111 1111 122 3467777777765443 489999999999
Q ss_pred chhhh
Q 004120 294 GGALA 298 (773)
Q Consensus 294 GGAlA 298 (773)
+|++.
T Consensus 187 ~~ai~ 191 (351)
T TIGR02707 187 VAAHR 191 (351)
T ss_pred eeeEE
Confidence 88774
No 390
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.01 E-value=4.9e+02 Score=28.28 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=7.2
Q ss_pred chhHHHHHHHHH
Q 004120 672 SDLKDMIELLKL 683 (773)
Q Consensus 672 ~~ik~kiE~LK~ 683 (773)
|++=..||.+..
T Consensus 174 ~ell~~yeri~~ 185 (239)
T COG1579 174 PELLSEYERIRK 185 (239)
T ss_pred HHHHHHHHHHHh
Confidence 455566666655
No 391
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=21.99 E-value=5.5e+02 Score=27.95 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=49.1
Q ss_pred cCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhhhccccceeeeecCCeeeeeCHH
Q 004120 241 HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPE 319 (773)
Q Consensus 241 f~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAlA~g~aD~Vlm~e~A~~sVisPE 319 (773)
...|=+.+.|-|..-+.+- +.+.|++.+..+..... +||++=+=. ...|+-.+|+.+.++++.+-.-+|-
T Consensus 152 m~~PklLLLDEPs~GLaP~-----iv~~I~~~i~~l~~~~g--~tIlLVEQn--~~~Al~iaDr~yvle~Griv~~G~~ 221 (237)
T COG0410 152 MSRPKLLLLDEPSEGLAPK-----IVEEIFEAIKELRKEGG--MTILLVEQN--ARFALEIADRGYVLENGRIVLSGTA 221 (237)
T ss_pred hcCCCEEEecCCccCcCHH-----HHHHHHHHHHHHHHcCC--cEEEEEecc--HHHHHHhhCEEEEEeCCEEEEecCH
Confidence 4679999999998776653 34568888888885533 444443322 3445556999999999998877764
No 392
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=21.94 E-value=43 Score=34.39 Aligned_cols=13 Identities=54% Similarity=0.825 Sum_probs=8.4
Q ss_pred cEEEEecCCCCCC
Q 004120 244 PIVTFIDTPGAYA 256 (773)
Q Consensus 244 PIVtLIDTpGA~~ 256 (773)
.-|+||||||+.=
T Consensus 49 ~~v~VIDTPGl~d 61 (212)
T PF04548_consen 49 RQVTVIDTPGLFD 61 (212)
T ss_dssp EEEEEEE--SSEE
T ss_pred eEEEEEeCCCCCC
Confidence 4578999999753
No 393
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=21.94 E-value=70 Score=39.41 Aligned_cols=90 Identities=24% Similarity=0.284 Sum_probs=50.8
Q ss_pred eEEEEEEe-ecCCCc-cccccccCCCCCHHHHHH----HHHHHHHhhhcCC--------------cEEEEecCCC-CCCC
Q 004120 199 RTYMFMGH-QKGRNT-KENIQRNFGMPTPHGYRK----ALRMMYYADHHGF--------------PIVTFIDTPG-AYAD 257 (773)
Q Consensus 199 rpV~VIa~-dkg~~~-~e~~~~ngG~~~peg~rK----A~R~m~lAekf~L--------------PIVtLIDTpG-A~~g 257 (773)
|.++|+|| |.|++| -|++-+..|.++..|--. ..-.|.+-.+.|+ =.|.|||||| ...+
T Consensus 11 RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt 90 (697)
T COG0480 11 RNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFT 90 (697)
T ss_pred eEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccH
Confidence 67888888 455443 366666777777644333 3334444444442 4789999999 4444
Q ss_pred HhHHHh---------------chHHHHHHHHHHHhCCCCcEEEEEc
Q 004120 258 LKSEEL---------------GQGEAIAHNLRTMFGLKVPIISIVI 288 (773)
Q Consensus 258 ~~AEe~---------------Gqa~aIAr~L~ams~l~VP~ISVVi 288 (773)
.+.+.. |.....-..+......+||.|.+|.
T Consensus 91 ~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiN 136 (697)
T COG0480 91 IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVN 136 (697)
T ss_pred HHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEE
Confidence 444421 1111223334445557788888774
No 394
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.74 E-value=1e+03 Score=25.61 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhc
Q 004120 560 AKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDS 593 (773)
Q Consensus 560 ~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka 593 (773)
.++|.||++.|. +-+.||+-||-++..+
T Consensus 95 ~q~k~Eiersi~------~a~~kie~lkkql~ea 122 (222)
T KOG3215|consen 95 VQKKLEIERSIQ------KARNKIELLKKQLHEA 122 (222)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 457888888885 5678888888888777
No 395
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=21.73 E-value=4.4e+02 Score=29.91 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=26.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchHHhh
Q 004120 598 FSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVK 635 (773)
Q Consensus 598 ~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~~~~~~l~ 635 (773)
+++-=..++.+|..+++.++.++.....++...+..+.
T Consensus 280 ~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~ 317 (444)
T TIGR03017 280 NHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILK 317 (444)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456778888888888888877777666555544
No 396
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=21.70 E-value=1.8e+02 Score=32.86 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=28.2
Q ss_pred HHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHhCCCCcEEEEEcCCCccchhh
Q 004120 233 RMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGAL 297 (773)
Q Consensus 233 R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams~l~VP~ISVViGeg~GGGAl 297 (773)
+++++.++ ++.--.+|.+|=-+.+.. | .=..+...+||.|++.=..|+|.=|.
T Consensus 271 ~l~~li~~-~~~palvig~PVGFV~a~-e----------sKe~L~~~~vP~I~~~G~kGGs~vAa 323 (335)
T PRK05782 271 ETLKLVKE-GVDIPFIVATPPGFTNAK-E----------VKEALIESGIPSVVLRGTYGGSGIAV 323 (335)
T ss_pred HHHHHHhc-CCCCcEEEEeCCcccCHH-H----------HHHHHHhCCCCEEEEecCCCcHHHHH
Confidence 44455444 433334677775555521 1 11223346799999777666554333
No 397
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=21.60 E-value=1.1e+03 Score=26.34 Aligned_cols=140 Identities=20% Similarity=0.313 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH-H-----HhhcCcchHHhhhHHHHhhhccccchhhhhHHHHHHHHHHHHHHhhc------
Q 004120 603 DDLKEKLVETKKEIESELID-G-----LESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVIN------ 670 (773)
Q Consensus 603 ~~Lkeki~k~k~Ef~~~l~~-~-----~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~~l~~ei~kkie~~~~------ 670 (773)
.+||+.+-.+-+=|..-|-. | =-+|.|.|+-||-++-++ ++-+..+++|+.+|+.++=.
T Consensus 80 r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~---------eE~~~~~~re~~eK~~elEr~K~~~d 150 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEEL---------EETLAQLQREYREKIRELERQKRAHD 150 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777555555444322 2 346778888888444443 34566677777777765421
Q ss_pred -----cchhHHHHHHHHHHHHhhCC-----CC--------ChhhHHHHHHHHHHHHHHHHHHhCChh-------------
Q 004120 671 -----SSDLKDMIELLKLEIAKAGK-----KP--------DVKSKCKIQALEQQIKQRLSEAVNSSE------------- 719 (773)
Q Consensus 671 -----~~~ik~kiE~LK~Evakag~-----~p--------~~~~k~KIe~l~~~I~~~ie~a~~ss~------------- 719 (773)
..++++.+.....-|++.|. +| ......++..+-++--+-++.+ ....
T Consensus 151 ~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~a-G~g~LDvRLkKl~~eke 229 (302)
T PF09738_consen 151 SLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESA-GDGSLDVRLKKLADEKE 229 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhccc-CCCCHHHHHHHHHHHHH
Confidence 11344444444445567776 11 1111345655555555555555 1111
Q ss_pred -hHHHHHHHHHHHh-----hccCCCCCCCCCccCCCCcC
Q 004120 720 -LKEKHEELMAEIS-----DATKSPGGLDGGVNNEHAKD 752 (773)
Q Consensus 720 -lk~k~E~Lk~e~a-----~a~~~~~~~~~s~~~~~~~~ 752 (773)
|-+.|..||..+- ......-..+|++..+++-|
T Consensus 230 ~L~~qv~klk~qLee~~~~~~~~~~~~~~~~l~~~~~~E 268 (302)
T PF09738_consen 230 ELLEQVRKLKLQLEERQSEGRRQKSSSENGVLGDDEDLE 268 (302)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccCCCcccccccccc
Confidence 3444566776661 12223345566666554444
No 398
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=21.47 E-value=2.4e+02 Score=30.03 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=14.2
Q ss_pred HhCCCCcEEEEEcCCCccchh
Q 004120 276 MFGLKVPIISIVIGEGGSGGA 296 (773)
Q Consensus 276 ms~l~VP~ISVViGeg~GGGA 296 (773)
+...+||.|++.=..|+|.=|
T Consensus 174 L~~~~vP~It~~GrkGGS~vA 194 (210)
T PRK06264 174 LRNTNIPSISTIGPKGGTPVA 194 (210)
T ss_pred HHhCCCCEEEEecCCCcHHHH
Confidence 344689999977777655433
No 399
>PRK10869 recombination and repair protein; Provisional
Probab=21.09 E-value=8.7e+02 Score=29.13 Aligned_cols=179 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHH-H-------HHHHhHHhhcCcchHHHHH
Q 004120 513 MDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQ-E-------INKKFEEVICRPDIKEKME 584 (773)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~-E-------i~~~~~ea~~~~~lkek~~ 584 (773)
.+-+.-.-+|...-=-.+.+++.|.+++..|. +..+-..........|.. + |+.-..++-...++.+.+.
T Consensus 187 ~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~--n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~ 264 (553)
T PRK10869 187 KQLLQYQLKELNEFAPQPGEFEQIDEEYKRLA--NSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSELIGMDSKLS 264 (553)
T ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHH
Q ss_pred HHHHHHhhcCCCCCCCCChHHHHHHHHHH------HHHHHHHHHH---HhhcCcchHHhhhHHHHhhhccccchhhhhHH
Q 004120 585 AIKAKLQDSGASSFSDLEDDLKEKLVETK------KEIESELIDG---LESLGLDVEVVKSKAKELSEQTSFSNFRSKME 655 (773)
Q Consensus 585 ~lk~E~~ka~~s~~~~l~~~Lkeki~k~k------~Ef~~~l~~~---~~sl~~~~~~l~sk~k~~~~~~~~~~~~~k~~ 655 (773)
.+-+.+..+ ...-+++...|..-.+.+- ++++.+|..- -+.-|..++ .+-
T Consensus 265 ~~~~~l~~~-~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~--------------------~~~ 323 (553)
T PRK10869 265 GVLDMLEEA-LIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPE--------------------ELP 323 (553)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHH--------------------HHH
Q ss_pred HHHHHHHHHHHHhhccch----hHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHH
Q 004120 656 NLNEEINKKIEDVINSSD----LKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEA 714 (773)
Q Consensus 656 ~l~~ei~kkie~~~~~~~----ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~~~ie~a 714 (773)
...+++.++++.+=+..+ +..+++.++.++...+..=...=++-.+.|.+.|.+.|.++
T Consensus 324 ~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L 386 (553)
T PRK10869 324 QHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHEL 386 (553)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 400
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=20.86 E-value=3.7e+02 Score=27.51 Aligned_cols=91 Identities=16% Similarity=0.244 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccc--hhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhh
Q 004120 515 KITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLL--DSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQD 592 (773)
Q Consensus 515 ~~~~~~~~~~~~~~~~~n~~~Lk~ki~~~ke~s~~~~~~--~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k 592 (773)
-+.-+|+-|++|-..--+|..+.+.+.+.+.--...... ...+++..++.||. .++.+++.++.++..
T Consensus 119 ~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~----------~~~~~~~~~~~~~~~ 188 (236)
T PF09325_consen 119 YIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIE----------EAERRVEQAKDEFEE 188 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 345667777777766666666666666665443322222 12456666666664 234555555555543
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 004120 593 SGASSFSDLEDDLKEKLVETKKEIESELIDG 623 (773)
Q Consensus 593 a~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~ 623 (773)
. ...++..++++.++-...|...
T Consensus 189 i--------s~~~k~E~~rf~~~k~~d~k~~ 211 (236)
T PF09325_consen 189 I--------SENIKKELERFEKEKVKDFKSM 211 (236)
T ss_pred H--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3 4557777777777755555544
No 401
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=20.78 E-value=3.7e+02 Score=27.02 Aligned_cols=10 Identities=20% Similarity=0.534 Sum_probs=4.6
Q ss_pred hHHHHHHHHH
Q 004120 653 KMENLNEEIN 662 (773)
Q Consensus 653 k~~~l~~ei~ 662 (773)
....++.+|+
T Consensus 28 e~~~~k~ql~ 37 (155)
T PF06810_consen 28 ERDNLKTQLK 37 (155)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 402
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=20.77 E-value=1.1e+03 Score=25.65 Aligned_cols=20 Identities=20% Similarity=0.611 Sum_probs=13.7
Q ss_pred HhhcCcchHHhhhHHHHhhh
Q 004120 624 LESLGLDVEVVKSKAKELSE 643 (773)
Q Consensus 624 ~~sl~~~~~~l~sk~k~~~~ 643 (773)
|..|+.+++.++.+...+-+
T Consensus 91 ~~aL~~E~~~ak~r~~~le~ 110 (239)
T COG1579 91 LRALNIEIQIAKERINSLED 110 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777777766665554
No 403
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=20.74 E-value=88 Score=23.27 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhccCCCCChhhHHHHHH
Q 004120 513 MDKITELKNEFNQGLASAPNYASLKYKLD 541 (773)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~n~~~Lk~ki~ 541 (773)
.+++.+|++-|..++=+.-+|...|++|+
T Consensus 2 ~~~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 2 EDRLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999999986
No 404
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=20.61 E-value=2.8e+02 Score=29.18 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=48.1
Q ss_pred HhhhcCCCCCCchhhhhhh-hhhhheeccCCCCCCCCCceEEEEEEECCeEEEEEEeecCCCccccccccCCCCCHHHHH
Q 004120 151 RVNIARHPNRPTFLDHVFN-ITEKFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYR 229 (773)
Q Consensus 151 RV~l~Rdp~RP~~~d~I~~-l~DdF~EL~gd~~~~dD~aVVtGlArI~GrpV~VIa~dkg~~~~e~~~~ngG~~~peg~r 229 (773)
+|.+.-||.| -+.|.. ++|+...+... .+..+..|.++|.+|.|+.+--| . |....
T Consensus 15 ~vi~~Gdp~r---~~~ia~~~l~~~~~~~~~------r~~~~~~G~~~g~~v~v~~tGiG------------~--~~aai 71 (235)
T PRK05819 15 TVLMPGDPLR---AKYIAETFLEDVVCVNEV------RGMLGFTGTYKGKRVSVMGTGMG------------I--PSISI 71 (235)
T ss_pred eEEecCCHHH---HHHHHHHHhcCcEeeeee------ccEEEEEEEECCEEEEEEecCCC------------h--hHHHH
Confidence 4555555655 345554 56655444322 34566778999999999874432 1 22222
Q ss_pred HHHHHHHHhhhcCCcEEEEecCCCCC
Q 004120 230 KALRMMYYADHHGFPIVTFIDTPGAY 255 (773)
Q Consensus 230 KA~R~m~lAekf~LPIVtLIDTpGA~ 255 (773)
- +-+++..++.-.|..+-|.|+.
T Consensus 72 ~---~~eLi~~~~~~~iI~~GtaG~l 94 (235)
T PRK05819 72 Y---ANELITDYGVKKLIRVGSCGAL 94 (235)
T ss_pred H---HHHHHHhcCCcEEEEEecccCC
Confidence 2 2245556888899999998866
No 405
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=20.51 E-value=3e+02 Score=32.04 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=38.2
Q ss_pred ccCCCCCHHHHHHH----HHHHHHhhhcCCcEEEEecCCCCCCCHhHHHhchHHHHHHHHHHHh
Q 004120 218 RNFGMPTPHGYRKA----LRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMF 277 (773)
Q Consensus 218 ~ngG~~~peg~rKA----~R~m~lAekf~LPIVtLIDTpGA~~g~~AEe~Gqa~aIAr~L~ams 277 (773)
.|.+++.++-.+++ .+-++.|..+|++.|.|. ||...+....+.++ ..++.+|..+.
T Consensus 203 INLASpd~e~rekSv~~~~~eL~rA~~LGa~~VV~H--PGs~~~~~~~ee~i-~~i~e~L~~~l 263 (413)
T PTZ00372 203 INLANPDKEKREKSYDAFLDDLQRCEQLGIKLYNFH--PGSTVGQCSKEEGI-KNIADCINKAH 263 (413)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEC--CCcCCCCCCHHHHH-HHHHHHHHHHH
Confidence 67788888877774 445578999999988886 88766543322233 45666665543
No 406
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=20.50 E-value=3.4e+02 Score=32.81 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEecC
Q 004120 226 HGYRKALRMMYYADHHGFPIVTFIDT 251 (773)
Q Consensus 226 eg~rKA~R~m~lAekf~LPIVtLIDT 251 (773)
.|+.-..|.++.+.+||+|+|..|+-
T Consensus 356 sGl~NL~RHIenvr~FGvPvVVAINK 381 (557)
T PRK13505 356 KGFANLERHIENIRKFGVPVVVAINK 381 (557)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 46777889999999999999999995
No 407
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=20.46 E-value=3.9e+02 Score=25.44 Aligned_cols=31 Identities=16% Similarity=0.381 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004120 582 KMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIE 617 (773)
Q Consensus 582 k~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~ 617 (773)
=|++||+||...+. -||...+.+.++..+|.
T Consensus 13 EYe~LKEEi~~l~~-----~~~~~~e~l~~i~r~f~ 43 (99)
T PF13758_consen 13 EYEGLKEEIEALPE-----DDDATREDLLRIRRDFG 43 (99)
T ss_pred HHHHHHHHHHhccc-----cCCCCHHHHHHHHHhcC
Confidence 37899999998743 34445566777777766
No 408
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=20.33 E-value=93 Score=31.96 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=18.1
Q ss_pred HHHHHhhhcCCcEEEEecCC
Q 004120 233 RMMYYADHHGFPIVTFIDTP 252 (773)
Q Consensus 233 R~m~lAekf~LPIVtLIDTp 252 (773)
.+++-|.+.|+|+|+++||.
T Consensus 141 ~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 141 QAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred HHHHHHHHcCCCEEEEecCC
Confidence 66788999999999999997
No 409
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=20.28 E-value=2.5e+02 Score=30.94 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=36.9
Q ss_pred ccCCCCC-HHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC----CHhHHHhchHHHHHHH
Q 004120 218 RNFGMPT-PHGYRKALRMMYYADHHGFPIVTFIDTPGAYA----DLKSEELGQGEAIAHN 272 (773)
Q Consensus 218 ~ngG~~~-peg~rKA~R~m~lAekf~LPIVtLIDTpGA~~----g~~AEe~Gqa~aIAr~ 272 (773)
+++|+-+ .+..+.+.++...|.++|+|+|..+=--|... ...++..+++..++..
T Consensus 118 Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaae 177 (265)
T COG1830 118 VYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAE 177 (265)
T ss_pred EecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHH
Confidence 4556555 66788999999999999999998765555444 2334445554444443
No 410
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=20.26 E-value=5.7e+02 Score=23.78 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=34.7
Q ss_pred HHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004120 563 KQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLG 628 (773)
Q Consensus 563 k~Ei~~~~~ea~~~~~lkek~~~lk~E~~ka~~s~~~~l~~~Lkeki~k~k~Ef~~~l~~~~~sl~ 628 (773)
+.|++.++.+.+..-|+++.+...+.++.. .+.++..+...++.+|.
T Consensus 18 ~~e~~~~l~~Wa~~~~v~~~~~~f~~~~~~-------------------~~~~~~~~~~~vi~~L~ 64 (113)
T PF02520_consen 18 KAEIEEQLDEWAEKYGVQDQYNEFKAQVQA-------------------QKEEVRKNVTAVISNLS 64 (113)
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHH
Confidence 578888899999999999998888886653 35566666666655555
No 411
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=20.17 E-value=1.3e+03 Score=28.89 Aligned_cols=78 Identities=13% Similarity=0.250 Sum_probs=54.5
Q ss_pred HHHHHHhHHHHHHHHHcCcHHHHHHHHHHhccCCCC------------CCCCChHHHHHHHHHHHHHhhccCCCCChhhH
Q 004120 469 KLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSR------------DQLMDPILMDKITELKNEFNQGLASAPNYASL 536 (773)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~L 536 (773)
+.++.|..+++.-++-.=|.+.|..+++|+-..... ..-|.+..++++++-.+.|+.-=...|+|.-.
T Consensus 210 ~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 289 (775)
T TIGR00763 210 KITKKVEEKMEKTQREYYLREQLKAIKKELGIEKDDKDELEKLKEKLEELKLPEEVKKVIEKELTKLSLLEPSSSEFTVT 289 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 344444555555556666777777777777653221 22377888888888888888888889999999
Q ss_pred HHHHHHhhhh
Q 004120 537 KYKLDMLKEF 546 (773)
Q Consensus 537 k~ki~~~ke~ 546 (773)
++=|+.+...
T Consensus 290 ~~yl~~~~~i 299 (775)
T TIGR00763 290 RNYLDWLTDL 299 (775)
T ss_pred HHHHHHHHCC
Confidence 9888877654
No 412
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=20.08 E-value=1.2e+02 Score=33.78 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=25.5
Q ss_pred hhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHH
Q 004120 668 VINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIK 708 (773)
Q Consensus 668 ~~~~~~ik~kiE~LK~Evakag~~p~~~~k~KIe~l~~~I~ 708 (773)
+||+.++..+|-.+|.+.+ +.|++|..|+.||+
T Consensus 130 Ivn~~~F~~rf~~Ied~~~--------~kK~~I~~L~~qis 162 (308)
T PF06717_consen 130 IVNDQDFNYRFNQIEDEYN--------RKKNKIPGLNKQIS 162 (308)
T ss_pred EecchhHHHHHHHHHHHHH--------HHhhhhHHHHHHHH
Confidence 5677788888888888877 55778888888775
No 413
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=20.03 E-value=3.2e+02 Score=27.10 Aligned_cols=46 Identities=30% Similarity=0.326 Sum_probs=32.1
Q ss_pred CcEEEEEcCCCccchhh---hccccceeeeecCCeeeeeCHHHHHHHhh
Q 004120 281 VPIISIVIGEGGSGGAL---AIGCANKLLMLENAVFYVASPEACAAILW 326 (773)
Q Consensus 281 VP~ISVViGeg~GGGAl---A~g~aD~Vlm~e~A~~sVisPEgaAsIl~ 326 (773)
..++++++|.+....++ ....+|.++..++..+.-..|+..+.++.
T Consensus 36 ~~v~~v~~G~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~~l~ 84 (181)
T cd01985 36 GEVTALVIGPPAAEVALREALAMGADKVLLVEDPALAGYDPEATAKALA 84 (181)
T ss_pred CeEEEEEECChHHHHHHHHHHHhCCCEEEEEecCcccCCChHHHHHHHH
Confidence 45888889987655441 12358899988877676667887777764
No 414
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=20.03 E-value=1.4e+03 Score=26.46 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHHhccCCCC----CCCCChHHHHHHHHHHHHHhhc----cCCCCChhhHHHHHHHhhhh
Q 004120 486 GMQEKFATLRAEFSKGNSR----DQLMDPILMDKITELKNEFNQG----LASAPNYASLKYKLDMLKEF 546 (773)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~n~~~Lk~ki~~~ke~ 546 (773)
+++.++..++.-+...+.. +.+....+..++..+..+...- -...|.+-.|+.||..++..
T Consensus 222 ~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~ 290 (498)
T TIGR03007 222 EAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQ 290 (498)
T ss_pred HHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Confidence 4555566666544422110 1111223444455444443322 23556666666666666543
Done!