Query 004121
Match_columns 772
No_of_seqs 476 out of 2491
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:57:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wjy_A Regulator of nonsense t 100.0 3E-126 9E-131 1142.2 60.6 627 138-769 2-733 (800)
2 2xzl_A ATP-dependent helicase 100.0 6E-125 2E-129 1131.5 58.4 626 137-769 6-735 (802)
3 2gk6_A Regulator of nonsense t 100.0 6.9E-83 2.4E-87 750.9 50.2 536 230-769 20-557 (624)
4 4b3f_X DNA-binding protein smu 100.0 1.7E-75 5.9E-80 690.9 47.8 504 249-770 47-584 (646)
5 3lfu_A DNA helicase II; SF1 he 99.9 5.5E-25 1.9E-29 258.9 19.9 315 389-733 8-371 (647)
6 3e1s_A Exodeoxyribonuclease V, 99.9 1.2E-22 4.1E-27 236.2 19.0 225 389-731 188-420 (574)
7 3upu_A ATP-dependent DNA helic 99.9 1.2E-21 4.2E-26 222.1 21.4 244 386-731 21-274 (459)
8 1pjr_A PCRA; DNA repair, DNA r 99.9 4.7E-22 1.6E-26 237.6 18.0 314 389-734 10-376 (724)
9 1uaa_A REP helicase, protein ( 99.9 1.3E-21 4.6E-26 231.8 19.0 311 390-734 2-367 (673)
10 1w36_D RECD, exodeoxyribonucle 99.8 6.2E-19 2.1E-23 206.6 13.1 199 392-642 151-378 (608)
11 3vkw_A Replicase large subunit 99.7 1.5E-16 5.1E-21 177.8 14.9 228 405-767 161-391 (446)
12 3u4q_A ATP-dependent helicase/ 99.6 1.5E-15 5.1E-20 191.0 16.1 175 551-734 400-607 (1232)
13 1w36_B RECB, exodeoxyribonucle 99.4 5.1E-13 1.7E-17 167.5 15.3 173 551-734 377-576 (1180)
14 3u4q_B ATP-dependent helicase/ 99.4 6.2E-12 2.1E-16 157.7 19.7 148 552-733 202-367 (1166)
15 1rif_A DAR protein, DNA helica 98.8 3.7E-08 1.3E-12 103.7 12.7 69 390-458 113-181 (282)
16 2fz4_A DNA repair protein RAD2 98.7 6.8E-08 2.3E-12 99.6 13.8 73 389-465 92-165 (237)
17 2gxq_A Heat resistant RNA depe 98.7 5.4E-08 1.9E-12 96.8 12.2 70 388-457 21-95 (207)
18 3b6e_A Interferon-induced heli 98.7 2.1E-08 7E-13 100.1 8.3 68 389-456 32-105 (216)
19 3dmn_A Putative DNA helicase; 98.7 6.8E-08 2.3E-12 95.0 10.2 117 621-766 2-125 (174)
20 1vec_A ATP-dependent RNA helic 98.7 4.4E-08 1.5E-12 97.5 8.6 70 388-457 23-94 (206)
21 1t6n_A Probable ATP-dependent 98.6 2.1E-07 7.3E-12 93.7 13.1 70 388-457 34-105 (220)
22 1qde_A EIF4A, translation init 98.6 1.3E-07 4.5E-12 95.4 11.2 69 389-457 35-105 (224)
23 3iuy_A Probable ATP-dependent 98.6 1.9E-07 6.5E-12 94.7 12.3 69 389-457 41-117 (228)
24 2pl3_A Probable ATP-dependent 98.6 2.1E-07 7.1E-12 95.0 12.2 71 388-458 45-121 (236)
25 3ber_A Probable ATP-dependent 98.6 2.8E-07 9.7E-12 95.4 13.0 70 388-457 63-134 (249)
26 1wrb_A DJVLGB; RNA helicase, D 98.6 6.5E-07 2.2E-11 92.3 15.2 71 387-457 42-123 (253)
27 3bor_A Human initiation factor 98.5 1.8E-07 6.2E-12 95.8 9.8 69 389-457 51-121 (237)
28 1hv8_A Putative ATP-dependent 98.5 3.9E-07 1.3E-11 97.9 12.6 69 389-457 27-97 (367)
29 3fe2_A Probable ATP-dependent 98.5 4.8E-07 1.6E-11 92.9 12.7 70 388-457 49-125 (242)
30 3ly5_A ATP-dependent RNA helic 98.5 4E-07 1.4E-11 95.0 12.1 70 388-457 74-149 (262)
31 1wp9_A ATP-dependent RNA helic 98.5 3.7E-07 1.3E-11 101.1 12.5 67 390-457 9-75 (494)
32 2oca_A DAR protein, ATP-depend 98.5 3.4E-07 1.2E-11 104.2 12.4 68 390-457 113-180 (510)
33 2oxc_A Probable ATP-dependent 98.5 5E-07 1.7E-11 92.0 11.6 70 388-457 44-115 (230)
34 1q0u_A Bstdead; DEAD protein, 98.5 3.2E-07 1.1E-11 92.5 9.7 69 389-457 25-95 (219)
35 2z0m_A 337AA long hypothetical 98.5 8.5E-07 2.9E-11 94.2 13.0 66 388-457 14-79 (337)
36 3dkp_A Probable ATP-dependent 98.4 3.9E-07 1.3E-11 93.5 9.3 70 388-457 49-121 (245)
37 1s2m_A Putative ATP-dependent 98.4 8.1E-07 2.8E-11 97.2 12.3 70 388-457 41-112 (400)
38 2fwr_A DNA repair protein RAD2 98.4 5.9E-07 2E-11 101.2 11.3 73 389-465 92-165 (472)
39 1xti_A Probable ATP-dependent 98.4 9.8E-07 3.4E-11 96.0 12.7 69 389-457 29-99 (391)
40 1fuu_A Yeast initiation factor 98.4 6.8E-07 2.3E-11 97.2 10.8 69 389-457 42-112 (394)
41 3oiy_A Reverse gyrase helicase 98.4 7.2E-07 2.5E-11 98.6 11.0 74 390-464 21-97 (414)
42 3h1t_A Type I site-specific re 98.4 5.8E-07 2E-11 104.4 9.6 70 389-458 177-260 (590)
43 3pey_A ATP-dependent RNA helic 98.4 1.4E-06 4.9E-11 94.4 12.1 70 388-457 25-98 (395)
44 2j0s_A ATP-dependent RNA helic 98.4 1.5E-06 5.3E-11 95.4 12.4 69 389-457 58-128 (410)
45 3tbk_A RIG-I helicase domain; 98.4 1E-06 3.6E-11 100.2 11.1 76 390-465 4-87 (555)
46 4a2p_A RIG-I, retinoic acid in 98.4 1.7E-06 5.9E-11 98.6 12.7 76 389-464 6-89 (556)
47 3eiq_A Eukaryotic initiation f 98.3 1.2E-06 4E-11 96.1 10.7 69 389-457 61-131 (414)
48 2i4i_A ATP-dependent RNA helic 98.3 2.7E-06 9.4E-11 93.4 12.9 69 389-457 36-124 (417)
49 3fht_A ATP-dependent RNA helic 98.3 3.4E-06 1.2E-10 92.2 11.7 70 388-457 45-118 (412)
50 2ykg_A Probable ATP-dependent 98.2 4.6E-06 1.6E-10 98.5 12.8 77 388-464 11-95 (696)
51 4a2q_A RIG-I, retinoic acid in 98.2 3E-06 1E-10 102.1 11.3 78 388-465 246-331 (797)
52 2va8_A SSO2462, SKI2-type heli 98.2 2.6E-06 9E-11 101.3 10.2 68 388-455 28-96 (715)
53 4gl2_A Interferon-induced heli 98.2 1.2E-06 4E-11 103.6 6.3 75 390-464 7-90 (699)
54 1gm5_A RECG; helicase, replica 98.2 8.6E-06 2.9E-10 97.7 13.0 67 390-457 368-440 (780)
55 2zpa_A Uncharacterized protein 98.1 7E-06 2.4E-10 96.1 11.4 157 390-639 175-335 (671)
56 3fmo_B ATP-dependent RNA helic 98.1 8E-06 2.7E-10 87.0 10.9 70 388-457 112-185 (300)
57 2db3_A ATP-dependent RNA helic 98.1 1.3E-05 4.4E-10 89.7 13.0 69 389-457 77-152 (434)
58 4a2w_A RIG-I, retinoic acid in 98.1 5.4E-06 1.9E-10 101.7 10.2 78 389-466 247-332 (936)
59 2p6r_A Afuhel308 helicase; pro 98.1 3.4E-06 1.2E-10 100.1 7.5 67 388-455 23-89 (702)
60 2zj8_A DNA helicase, putative 98.1 4E-06 1.4E-10 99.9 7.8 68 388-456 21-90 (720)
61 3l9o_A ATP-dependent RNA helic 98.1 1.4E-05 4.7E-10 99.5 12.7 70 389-459 183-252 (1108)
62 3i5x_A ATP-dependent RNA helic 98.0 1.5E-05 5E-10 91.8 11.8 69 388-456 92-168 (563)
63 3fmp_B ATP-dependent RNA helic 98.0 1E-05 3.5E-10 91.2 10.1 70 388-457 112-185 (479)
64 3fho_A ATP-dependent RNA helic 98.0 2.9E-06 1E-10 96.9 5.1 70 388-457 139-212 (508)
65 3sqw_A ATP-dependent RNA helic 98.0 1.9E-05 6.6E-10 91.5 11.8 70 388-457 41-118 (579)
66 4ddu_A Reverse gyrase; topoiso 98.0 1.5E-05 5.1E-10 99.2 11.4 67 390-457 78-144 (1104)
67 2xgj_A ATP-dependent RNA helic 97.9 1.6E-05 5.5E-10 98.1 9.5 67 390-457 86-152 (1010)
68 3dmq_A RNA polymerase-associat 97.9 3.8E-05 1.3E-09 94.5 12.4 150 389-588 152-319 (968)
69 4a4z_A Antiviral helicase SKI2 97.9 3.5E-05 1.2E-09 95.0 11.7 67 390-457 39-105 (997)
70 1z63_A Helicase of the SNF2/RA 97.8 5.5E-05 1.9E-09 85.6 11.0 141 389-587 36-189 (500)
71 2eyq_A TRCF, transcription-rep 97.8 9.9E-05 3.4E-09 92.3 13.6 67 390-457 603-675 (1151)
72 1oyw_A RECQ helicase, ATP-depe 97.8 5.9E-05 2E-09 86.5 10.5 73 389-465 24-96 (523)
73 2v1x_A ATP-dependent DNA helic 97.7 6.3E-05 2.2E-09 87.7 9.8 74 389-466 43-116 (591)
74 1gku_B Reverse gyrase, TOP-RG; 97.7 6.8E-05 2.3E-09 93.0 10.1 65 391-457 58-122 (1054)
75 2l8b_A Protein TRAI, DNA helic 97.7 0.00015 5.1E-09 71.4 9.9 63 392-454 36-100 (189)
76 2vl7_A XPD; helicase, unknown 97.6 4.3E-05 1.5E-09 88.1 6.5 74 390-467 7-84 (540)
77 4f92_B U5 small nuclear ribonu 97.6 0.00017 5.7E-09 93.4 12.4 69 388-456 924-994 (1724)
78 3crv_A XPD/RAD3 related DNA he 97.6 0.00014 4.8E-09 83.9 10.0 72 391-466 4-83 (551)
79 1z3i_X Similar to RAD54-like; 97.5 0.00047 1.6E-08 81.1 12.9 154 390-587 55-232 (644)
80 2w00_A HSDR, R.ECOR124I; ATP-b 97.4 0.00025 8.5E-09 87.5 9.0 67 390-457 271-353 (1038)
81 3llm_A ATP-dependent RNA helic 97.4 0.00027 9.3E-09 72.0 8.0 66 391-456 62-131 (235)
82 4f92_B U5 small nuclear ribonu 97.3 0.00058 2E-08 88.4 11.7 70 387-456 76-156 (1724)
83 3mwy_W Chromo domain-containin 97.3 0.00041 1.4E-08 83.6 9.3 159 389-587 235-407 (800)
84 3rc3_A ATP-dependent RNA helic 97.3 0.00046 1.6E-08 81.5 9.0 59 401-464 151-209 (677)
85 2wv9_A Flavivirin protease NS2 97.2 0.00052 1.8E-08 81.1 8.6 54 404-458 240-294 (673)
86 2z83_A Helicase/nucleoside tri 97.2 0.0003 1E-08 79.3 6.3 52 404-456 20-72 (459)
87 2jlq_A Serine protease subunit 97.1 0.00068 2.3E-08 76.2 8.0 57 399-456 12-70 (451)
88 3kl4_A SRP54, signal recogniti 97.1 0.0034 1.2E-07 70.2 13.0 53 407-460 99-154 (433)
89 2v6i_A RNA helicase; membrane, 97.1 0.001 3.5E-08 74.3 8.9 50 405-455 2-52 (431)
90 3ec2_A DNA replication protein 97.1 0.00087 3E-08 65.0 7.1 48 392-439 16-72 (180)
91 3dm5_A SRP54, signal recogniti 96.9 0.0057 2E-07 68.5 13.4 54 407-461 102-158 (443)
92 3o8b_A HCV NS3 protease/helica 96.9 0.00051 1.7E-08 80.7 5.0 50 404-457 231-280 (666)
93 2j9r_A Thymidine kinase; TK1, 96.9 0.0026 9.1E-08 64.3 9.5 37 406-443 29-65 (214)
94 1g5t_A COB(I)alamin adenosyltr 96.7 0.017 5.8E-07 57.6 13.4 57 405-465 28-88 (196)
95 1w4r_A Thymidine kinase; type 96.6 0.0034 1.2E-07 62.6 7.0 38 405-443 20-57 (195)
96 2w58_A DNAI, primosome compone 96.4 0.0068 2.3E-07 59.6 8.4 34 406-440 55-88 (202)
97 3bos_A Putative DNA replicatio 96.3 0.0095 3.3E-07 59.4 8.7 49 391-440 35-86 (242)
98 1tf5_A Preprotein translocase 96.2 0.024 8.3E-07 67.8 12.6 64 390-456 83-146 (844)
99 3te6_A Regulatory protein SIR3 96.2 0.0031 1.1E-07 67.7 4.5 28 405-432 45-72 (318)
100 2xau_A PRE-mRNA-splicing facto 96.1 0.0077 2.6E-07 72.3 7.8 64 393-456 96-162 (773)
101 2dr3_A UPF0273 protein PH0284; 96.1 0.0077 2.6E-07 60.7 6.8 52 405-458 23-74 (247)
102 1jbk_A CLPB protein; beta barr 96.0 0.0062 2.1E-07 58.1 5.6 39 393-431 28-69 (195)
103 1yks_A Genome polyprotein [con 96.0 0.0056 1.9E-07 68.5 5.6 56 403-459 6-62 (440)
104 1nkt_A Preprotein translocase 96.0 0.012 4E-07 70.6 8.4 64 390-456 111-174 (922)
105 2fsf_A Preprotein translocase 95.9 0.02 6.9E-07 68.4 10.3 64 390-456 74-137 (853)
106 2zts_A Putative uncharacterize 95.9 0.009 3.1E-07 60.3 6.1 53 405-458 30-82 (251)
107 4a15_A XPD helicase, ATP-depen 95.8 0.016 5.6E-07 67.7 8.9 75 392-467 5-88 (620)
108 2orw_A Thymidine kinase; TMTK, 95.8 0.0078 2.7E-07 59.2 5.2 38 405-443 3-40 (184)
109 2ipc_A Preprotein translocase 95.8 0.014 4.7E-07 70.0 8.1 64 390-456 79-142 (997)
110 2kjq_A DNAA-related protein; s 95.8 0.01 3.5E-07 56.2 5.8 42 389-431 21-62 (149)
111 1l8q_A Chromosomal replication 95.8 0.018 6.3E-07 61.1 8.3 35 406-441 38-72 (324)
112 2p65_A Hypothetical protein PF 95.7 0.0076 2.6E-07 57.5 4.7 39 393-431 28-69 (187)
113 2chg_A Replication factor C sm 95.7 0.0097 3.3E-07 58.2 5.5 40 392-431 22-64 (226)
114 2whx_A Serine protease/ntpase/ 95.6 0.0043 1.5E-07 72.6 2.7 58 399-457 180-238 (618)
115 3e2i_A Thymidine kinase; Zn-bi 95.6 0.026 9E-07 57.1 8.0 39 405-444 28-66 (219)
116 3h4m_A Proteasome-activating n 95.5 0.011 3.9E-07 61.2 5.1 23 406-428 52-74 (285)
117 2v1u_A Cell division control p 95.4 0.016 5.3E-07 62.3 6.2 40 392-431 24-70 (387)
118 4b4t_K 26S protease regulatory 95.4 0.0073 2.5E-07 67.4 3.7 22 408-429 209-230 (428)
119 3b9p_A CG5977-PA, isoform A; A 95.3 0.013 4.5E-07 61.2 5.1 23 406-428 55-77 (297)
120 1vma_A Cell division protein F 95.3 0.032 1.1E-06 59.4 8.2 54 407-461 106-162 (306)
121 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.021 7.3E-07 56.6 6.5 51 405-457 23-73 (235)
122 1tue_A Replication protein E1; 95.3 0.0072 2.5E-07 60.8 2.9 23 407-429 60-82 (212)
123 1njg_A DNA polymerase III subu 95.3 0.014 4.7E-07 57.7 4.8 39 392-430 28-70 (250)
124 2b8t_A Thymidine kinase; deoxy 95.3 0.015 5E-07 59.3 5.0 38 405-443 12-49 (223)
125 2r2a_A Uncharacterized protein 95.2 0.0091 3.1E-07 59.7 3.3 23 407-429 7-29 (199)
126 2qgz_A Helicase loader, putati 95.2 0.017 5.7E-07 61.6 5.5 35 406-441 153-188 (308)
127 1ofh_A ATP-dependent HSL prote 95.1 0.015 5E-07 60.7 4.8 25 405-429 50-74 (310)
128 1fnn_A CDC6P, cell division co 95.1 0.02 6.8E-07 61.7 5.9 39 393-431 23-70 (389)
129 3n70_A Transport activator; si 95.1 0.016 5.4E-07 54.3 4.4 23 405-427 24-46 (145)
130 3hws_A ATP-dependent CLP prote 95.1 0.016 5.5E-07 62.8 5.0 25 405-429 51-75 (363)
131 3eie_A Vacuolar protein sortin 95.1 0.02 6.9E-07 61.0 5.7 23 406-428 52-74 (322)
132 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.022 7.4E-07 58.0 5.6 24 406-429 40-63 (262)
133 3t15_A Ribulose bisphosphate c 95.0 0.011 3.8E-07 62.3 3.3 23 407-429 38-60 (293)
134 2qby_B CDC6 homolog 3, cell di 95.0 0.028 9.7E-07 60.6 6.6 40 393-432 26-72 (384)
135 2qby_A CDC6 homolog 1, cell di 95.0 0.026 8.7E-07 60.5 6.1 40 393-432 26-72 (386)
136 2r8r_A Sensor protein; KDPD, P 94.9 0.022 7.6E-07 58.1 5.1 33 407-440 8-40 (228)
137 3bh0_A DNAB-like replicative h 94.8 0.03 1E-06 59.7 6.0 50 405-456 68-117 (315)
138 4b4t_M 26S protease regulatory 94.8 0.014 4.7E-07 65.3 3.4 32 407-442 217-248 (434)
139 4fcw_A Chaperone protein CLPB; 94.8 0.022 7.5E-07 59.7 4.9 25 406-430 48-72 (311)
140 2r62_A Cell division protease 94.7 0.0097 3.3E-07 61.2 1.8 22 407-428 46-67 (268)
141 1xx6_A Thymidine kinase; NESG, 94.7 0.028 9.4E-07 55.8 5.0 37 406-443 9-45 (191)
142 1iqp_A RFCS; clamp loader, ext 94.6 0.024 8.3E-07 59.5 4.9 39 392-430 30-71 (327)
143 4b4t_J 26S protease regulatory 94.5 0.017 5.7E-07 63.9 3.4 23 407-429 184-206 (405)
144 4b4t_L 26S protease subunit RP 94.5 0.017 5.8E-07 64.6 3.4 23 407-429 217-239 (437)
145 3u61_B DNA polymerase accessor 94.5 0.033 1.1E-06 58.9 5.6 50 391-444 30-83 (324)
146 3co5_A Putative two-component 94.5 0.017 5.8E-07 54.0 2.8 21 405-425 27-47 (143)
147 1xwi_A SKD1 protein; VPS4B, AA 94.5 0.029 1E-06 59.9 5.0 24 406-429 46-69 (322)
148 3uk6_A RUVB-like 2; hexameric 94.5 0.035 1.2E-06 59.7 5.6 24 406-429 71-94 (368)
149 1c4o_A DNA nucleotide excision 94.4 0.063 2.2E-06 63.2 8.2 64 390-457 8-76 (664)
150 2z4s_A Chromosomal replication 94.4 0.069 2.4E-06 59.6 8.0 36 406-441 131-167 (440)
151 1lv7_A FTSH; alpha/beta domain 94.4 0.034 1.2E-06 56.9 5.1 23 406-428 46-68 (257)
152 1sxj_A Activator 1 95 kDa subu 94.4 0.029 9.9E-07 64.0 5.0 24 406-429 78-101 (516)
153 3syl_A Protein CBBX; photosynt 94.3 0.023 7.7E-07 59.6 3.7 26 407-432 69-94 (309)
154 1sxj_C Activator 1 40 kDa subu 94.3 0.037 1.3E-06 59.2 5.5 39 392-430 30-71 (340)
155 1j8m_F SRP54, signal recogniti 94.3 0.069 2.4E-06 56.5 7.5 54 407-461 100-156 (297)
156 1in4_A RUVB, holliday junction 94.2 0.034 1.2E-06 59.6 4.8 24 406-429 52-75 (334)
157 3hr8_A Protein RECA; alpha and 94.2 0.033 1.1E-06 60.7 4.6 48 406-454 62-109 (356)
158 1nlf_A Regulatory protein REPA 94.2 0.052 1.8E-06 56.4 6.0 50 405-456 30-89 (279)
159 4b4t_I 26S protease regulatory 94.1 0.024 8E-07 63.1 3.5 23 407-429 218-240 (437)
160 2bjv_A PSP operon transcriptio 94.1 0.039 1.3E-06 56.7 4.9 24 405-428 29-52 (265)
161 3pfi_A Holliday junction ATP-d 94.1 0.031 1.1E-06 59.5 4.3 23 406-428 56-78 (338)
162 2r44_A Uncharacterized protein 94.1 0.029 9.8E-07 59.7 4.0 35 394-428 34-69 (331)
163 1um8_A ATP-dependent CLP prote 94.1 0.039 1.3E-06 59.9 5.0 25 405-429 72-96 (376)
164 2chq_A Replication factor C sm 94.1 0.04 1.4E-06 57.6 4.9 39 392-430 22-63 (319)
165 3kb2_A SPBC2 prophage-derived 94.1 0.029 9.8E-07 53.1 3.5 23 407-429 3-25 (173)
166 2j37_W Signal recognition part 94.1 0.071 2.4E-06 60.7 7.3 56 407-463 103-161 (504)
167 3io5_A Recombination and repai 94.1 0.028 9.4E-07 60.3 3.7 41 405-445 28-69 (333)
168 1d2n_A N-ethylmaleimide-sensit 94.0 0.026 9.1E-07 58.2 3.4 23 406-428 65-87 (272)
169 2r6a_A DNAB helicase, replicat 94.0 0.055 1.9E-06 60.6 6.3 50 405-455 203-252 (454)
170 1sxj_E Activator 1 40 kDa subu 94.0 0.032 1.1E-06 59.6 4.1 48 392-439 19-70 (354)
171 2px0_A Flagellar biosynthesis 93.9 0.05 1.7E-06 57.6 5.4 36 406-441 106-141 (296)
172 1hqc_A RUVB; extended AAA-ATPa 93.9 0.035 1.2E-06 58.5 4.2 24 406-429 39-62 (324)
173 1cr0_A DNA primase/helicase; R 93.9 0.064 2.2E-06 56.1 6.2 50 405-455 35-84 (296)
174 1sxj_D Activator 1 41 kDa subu 93.9 0.032 1.1E-06 59.4 3.8 37 394-430 44-83 (353)
175 3d8b_A Fidgetin-like protein 1 93.9 0.044 1.5E-06 59.3 5.0 23 406-428 118-140 (357)
176 3vfd_A Spastin; ATPase, microt 93.9 0.046 1.6E-06 59.8 5.2 37 392-428 120-171 (389)
177 2z0h_A DTMP kinase, thymidylat 93.9 0.082 2.8E-06 51.2 6.4 31 407-438 2-32 (197)
178 2xxa_A Signal recognition part 93.8 0.09 3.1E-06 58.7 7.4 56 407-462 102-160 (433)
179 4b4t_H 26S protease regulatory 93.8 0.025 8.6E-07 63.4 2.9 23 407-429 245-267 (467)
180 3cf0_A Transitional endoplasmi 93.7 0.03 1E-06 59.1 3.2 23 406-428 50-72 (301)
181 2zr9_A Protein RECA, recombina 93.7 0.042 1.4E-06 59.6 4.4 39 405-444 61-99 (349)
182 1qhx_A CPT, protein (chloramph 93.7 0.033 1.1E-06 53.3 3.2 23 406-428 4-26 (178)
183 1g8p_A Magnesium-chelatase 38 93.6 0.036 1.2E-06 58.9 3.6 25 405-429 45-69 (350)
184 4a1f_A DNAB helicase, replicat 93.6 0.071 2.4E-06 57.6 5.9 50 405-456 46-95 (338)
185 1u94_A RECA protein, recombina 93.5 0.048 1.6E-06 59.4 4.5 39 405-444 63-101 (356)
186 1xjc_A MOBB protein homolog; s 93.5 0.074 2.5E-06 51.7 5.4 39 406-445 5-43 (169)
187 1jr3_A DNA polymerase III subu 93.5 0.053 1.8E-06 58.1 4.8 38 392-429 21-62 (373)
188 2q6t_A DNAB replication FORK h 93.5 0.086 2.9E-06 58.9 6.6 51 405-456 200-250 (444)
189 1w5s_A Origin recognition comp 93.4 0.062 2.1E-06 58.4 5.2 26 406-431 51-78 (412)
190 2c9o_A RUVB-like 1; hexameric 93.4 0.067 2.3E-06 59.9 5.6 24 406-429 64-87 (456)
191 2zan_A Vacuolar protein sortin 93.4 0.057 1.9E-06 60.4 5.0 24 406-429 168-191 (444)
192 1nks_A Adenylate kinase; therm 93.4 0.042 1.4E-06 52.9 3.4 33 407-440 3-35 (194)
193 1kht_A Adenylate kinase; phosp 93.4 0.044 1.5E-06 52.7 3.6 25 406-430 4-28 (192)
194 2x8a_A Nuclear valosin-contain 93.4 0.028 9.7E-07 58.7 2.3 20 408-427 47-66 (274)
195 1n0w_A DNA repair protein RAD5 93.4 0.058 2E-06 54.1 4.5 26 405-430 24-49 (243)
196 1sxj_B Activator 1 37 kDa subu 93.3 0.064 2.2E-06 56.1 5.0 38 393-430 27-67 (323)
197 2qp9_X Vacuolar protein sortin 93.3 0.04 1.4E-06 59.7 3.4 23 407-429 86-108 (355)
198 1gvn_B Zeta; postsegregational 93.3 0.075 2.6E-06 55.9 5.4 22 407-428 35-56 (287)
199 2v3c_C SRP54, signal recogniti 93.3 0.049 1.7E-06 60.8 4.2 34 407-441 101-134 (432)
200 1ly1_A Polynucleotide kinase; 93.3 0.043 1.5E-06 52.3 3.2 21 407-427 4-24 (181)
201 3pvs_A Replication-associated 93.3 0.065 2.2E-06 60.1 5.1 23 406-428 51-73 (447)
202 3trf_A Shikimate kinase, SK; a 93.2 0.053 1.8E-06 52.2 3.9 25 405-429 5-29 (185)
203 2cvh_A DNA repair and recombin 93.2 0.082 2.8E-06 52.1 5.3 34 405-442 20-53 (220)
204 1p9r_A General secretion pathw 93.2 0.083 2.8E-06 58.7 5.8 49 391-440 151-201 (418)
205 1q57_A DNA primase/helicase; d 93.2 0.06 2E-06 61.1 4.8 51 405-456 242-292 (503)
206 3lw7_A Adenylate kinase relate 93.2 0.043 1.5E-06 51.6 3.0 20 406-425 2-21 (179)
207 1xp8_A RECA protein, recombina 93.1 0.057 2E-06 58.9 4.4 40 405-445 74-113 (366)
208 1zu4_A FTSY; GTPase, signal re 93.1 0.076 2.6E-06 56.8 5.2 35 406-441 106-140 (320)
209 3b9q_A Chloroplast SRP recepto 93.1 0.2 6.8E-06 53.1 8.3 46 406-452 101-149 (302)
210 2rhm_A Putative kinase; P-loop 93.0 0.052 1.8E-06 52.4 3.4 24 406-429 6-29 (193)
211 2z43_A DNA repair and recombin 93.0 0.064 2.2E-06 57.3 4.3 53 405-457 107-165 (324)
212 2fna_A Conserved hypothetical 93.0 0.084 2.9E-06 55.8 5.3 36 393-429 19-54 (357)
213 2ehv_A Hypothetical protein PH 92.9 0.16 5.6E-06 50.9 7.1 49 405-455 30-79 (251)
214 3cpe_A Terminase, DNA packagin 92.9 0.25 8.5E-06 57.2 9.6 67 390-456 163-230 (592)
215 2yvu_A Probable adenylyl-sulfa 92.9 0.097 3.3E-06 50.6 5.2 34 406-440 14-47 (186)
216 1ixz_A ATP-dependent metallopr 92.9 0.045 1.5E-06 55.8 2.9 21 408-428 52-72 (254)
217 2plr_A DTMP kinase, probable t 92.8 0.06 2E-06 52.7 3.6 24 406-429 5-28 (213)
218 3iij_A Coilin-interacting nucl 92.8 0.063 2.1E-06 51.6 3.6 25 405-429 11-35 (180)
219 2o0j_A Terminase, DNA packagin 92.7 0.27 9.4E-06 53.9 9.0 67 390-456 163-230 (385)
220 2iyv_A Shikimate kinase, SK; t 92.7 0.069 2.3E-06 51.4 3.7 24 406-429 3-26 (184)
221 2d7d_A Uvrabc system protein B 92.6 0.27 9.3E-06 57.8 9.4 64 390-457 12-80 (661)
222 1tev_A UMP-CMP kinase; ploop, 92.6 0.068 2.3E-06 51.5 3.6 24 406-429 4-27 (196)
223 1kag_A SKI, shikimate kinase I 92.6 0.063 2.2E-06 51.0 3.2 23 406-428 5-27 (173)
224 1u0j_A DNA replication protein 92.5 0.1 3.4E-06 54.5 4.9 40 389-428 82-127 (267)
225 3a4m_A L-seryl-tRNA(SEC) kinas 92.5 0.11 3.8E-06 53.5 5.3 34 406-440 5-38 (260)
226 3nbx_X ATPase RAVA; AAA+ ATPas 92.5 0.066 2.3E-06 60.9 3.8 27 402-428 38-64 (500)
227 3pxg_A Negative regulator of g 92.4 0.1 3.6E-06 58.6 5.4 39 393-431 186-227 (468)
228 3e70_C DPA, signal recognition 92.4 0.21 7.3E-06 53.6 7.5 56 406-462 130-188 (328)
229 3cm0_A Adenylate kinase; ATP-b 92.4 0.073 2.5E-06 51.2 3.6 23 407-429 6-28 (186)
230 2og2_A Putative signal recogni 92.4 0.26 8.9E-06 53.6 8.3 54 407-461 159-215 (359)
231 3vaa_A Shikimate kinase, SK; s 92.4 0.077 2.6E-06 52.1 3.7 25 405-429 25-49 (199)
232 1via_A Shikimate kinase; struc 92.4 0.074 2.5E-06 50.9 3.5 23 407-429 6-28 (175)
233 2pbr_A DTMP kinase, thymidylat 92.3 0.22 7.5E-06 47.9 6.8 32 407-439 2-33 (195)
234 2cdn_A Adenylate kinase; phosp 92.3 0.077 2.6E-06 52.0 3.6 23 407-429 22-44 (201)
235 2c95_A Adenylate kinase 1; tra 92.3 0.075 2.6E-06 51.4 3.4 25 405-429 9-33 (196)
236 3fb4_A Adenylate kinase; psych 92.2 0.079 2.7E-06 52.4 3.6 22 408-429 3-24 (216)
237 2ze6_A Isopentenyl transferase 92.2 0.077 2.6E-06 54.6 3.6 23 407-429 3-25 (253)
238 1v5w_A DMC1, meiotic recombina 92.2 0.1 3.5E-06 56.2 4.7 53 405-457 122-180 (343)
239 1zuh_A Shikimate kinase; alpha 92.1 0.089 3E-06 49.9 3.7 24 406-429 8-31 (168)
240 1iy2_A ATP-dependent metallopr 92.1 0.064 2.2E-06 55.6 2.9 21 408-428 76-96 (278)
241 1qf9_A UMP/CMP kinase, protein 92.1 0.081 2.8E-06 50.8 3.4 23 407-429 8-30 (194)
242 1e6c_A Shikimate kinase; phosp 92.1 0.088 3E-06 49.9 3.6 24 406-429 3-26 (173)
243 3bgw_A DNAB-like replicative h 92.1 0.12 4.1E-06 57.9 5.2 50 405-456 197-246 (444)
244 3t61_A Gluconokinase; PSI-biol 92.1 0.082 2.8E-06 51.9 3.5 24 406-429 19-42 (202)
245 2bwj_A Adenylate kinase 5; pho 92.1 0.082 2.8E-06 51.3 3.4 25 405-429 12-36 (199)
246 2jaq_A Deoxyguanosine kinase; 92.0 0.089 3.1E-06 51.1 3.6 23 407-429 2-24 (205)
247 3hu3_A Transitional endoplasmi 91.9 0.077 2.6E-06 60.2 3.4 23 406-428 239-261 (489)
248 2wwf_A Thymidilate kinase, put 91.8 0.09 3.1E-06 51.6 3.4 26 406-431 11-36 (212)
249 1yrb_A ATP(GTP)binding protein 91.8 0.12 4.1E-06 52.6 4.5 35 405-441 14-48 (262)
250 1zp6_A Hypothetical protein AT 91.8 0.078 2.7E-06 51.2 2.9 23 405-427 9-31 (191)
251 1a5t_A Delta prime, HOLB; zinc 91.8 0.15 5.1E-06 54.5 5.4 25 407-431 26-50 (334)
252 3dl0_A Adenylate kinase; phosp 91.8 0.073 2.5E-06 52.7 2.7 21 408-428 3-23 (216)
253 1nn5_A Similar to deoxythymidy 91.7 0.093 3.2E-06 51.5 3.4 27 406-432 10-36 (215)
254 2vhj_A Ntpase P4, P4; non- hyd 91.7 0.17 6E-06 54.2 5.7 24 405-428 123-146 (331)
255 2vli_A Antibiotic resistance p 91.7 0.066 2.3E-06 51.3 2.2 23 406-428 6-28 (183)
256 1aky_A Adenylate kinase; ATP:A 91.7 0.099 3.4E-06 52.1 3.6 24 406-429 5-28 (220)
257 2yhs_A FTSY, cell division pro 91.7 0.32 1.1E-05 55.0 8.1 45 407-452 295-342 (503)
258 3p32_A Probable GTPase RV1496/ 91.7 0.13 4.6E-06 55.5 4.9 36 406-442 80-115 (355)
259 3b85_A Phosphate starvation-in 91.7 0.19 6.4E-06 50.3 5.6 39 390-428 7-45 (208)
260 3umf_A Adenylate kinase; rossm 91.6 0.1 3.5E-06 52.8 3.6 24 406-429 30-53 (217)
261 4eun_A Thermoresistant glucoki 91.6 0.11 3.8E-06 51.0 3.9 25 405-429 29-53 (200)
262 1np6_A Molybdopterin-guanine d 91.5 0.19 6.5E-06 48.9 5.3 36 405-441 6-41 (174)
263 3sr0_A Adenylate kinase; phosp 91.5 0.11 3.6E-06 52.1 3.6 21 408-428 3-23 (206)
264 1zak_A Adenylate kinase; ATP:A 91.5 0.097 3.3E-06 52.2 3.3 24 406-429 6-29 (222)
265 2ffh_A Protein (FFH); SRP54, s 91.5 0.31 1.1E-05 54.2 7.7 56 407-463 100-158 (425)
266 3jvv_A Twitching mobility prot 91.5 0.14 4.8E-06 55.6 4.8 34 405-438 123-156 (356)
267 1knq_A Gluconate kinase; ALFA/ 91.5 0.11 3.8E-06 49.5 3.6 23 406-428 9-31 (175)
268 1ls1_A Signal recognition part 91.3 0.41 1.4E-05 50.4 8.1 56 406-462 99-157 (295)
269 1g41_A Heat shock protein HSLU 91.2 0.16 5.6E-06 56.8 5.0 24 406-429 51-74 (444)
270 1y63_A LMAJ004144AAA protein; 91.2 0.12 4.1E-06 50.1 3.6 23 406-428 11-33 (184)
271 2xb4_A Adenylate kinase; ATP-b 91.2 0.12 4E-06 51.9 3.6 23 407-429 2-24 (223)
272 2pt5_A Shikimate kinase, SK; a 91.2 0.12 4.2E-06 48.7 3.6 23 407-429 2-24 (168)
273 2ewv_A Twitching motility prot 91.1 0.16 5.4E-06 55.5 4.7 37 405-441 136-172 (372)
274 2i1q_A DNA repair and recombin 91.1 0.13 4.4E-06 54.6 4.0 53 405-457 98-166 (322)
275 3tlx_A Adenylate kinase 2; str 91.0 0.12 4.2E-06 52.7 3.6 23 407-429 31-53 (243)
276 1ak2_A Adenylate kinase isoenz 91.0 0.12 4.2E-06 52.0 3.6 24 406-429 17-40 (233)
277 2qen_A Walker-type ATPase; unk 91.0 0.16 5.4E-06 53.5 4.5 36 393-428 18-54 (350)
278 4edh_A DTMP kinase, thymidylat 90.9 0.33 1.1E-05 48.7 6.5 40 405-445 6-46 (213)
279 1zd8_A GTP:AMP phosphotransfer 90.9 0.1 3.4E-06 52.4 2.7 23 406-428 8-30 (227)
280 1ukz_A Uridylate kinase; trans 90.9 0.11 3.6E-06 50.9 2.9 22 407-428 17-38 (203)
281 4ag6_A VIRB4 ATPase, type IV s 90.8 0.19 6.5E-06 54.9 5.1 58 404-466 34-91 (392)
282 3ug7_A Arsenical pump-driving 90.8 0.2 6.8E-06 54.1 5.1 37 405-442 26-62 (349)
283 2bdt_A BH3686; alpha-beta prot 90.8 0.12 4.1E-06 50.0 3.1 21 407-427 4-24 (189)
284 1rz3_A Hypothetical protein rb 90.7 0.34 1.2E-05 47.5 6.4 34 406-440 23-56 (201)
285 3be4_A Adenylate kinase; malar 90.7 0.13 4.6E-06 51.1 3.4 23 407-429 7-29 (217)
286 1ojl_A Transcriptional regulat 90.7 0.17 5.7E-06 53.6 4.4 23 405-427 25-47 (304)
287 2qor_A Guanylate kinase; phosp 90.7 0.12 4.1E-06 50.9 3.0 24 405-428 12-35 (204)
288 3pxi_A Negative regulator of g 90.6 0.2 6.7E-06 59.8 5.4 38 393-430 186-226 (758)
289 1e4v_A Adenylate kinase; trans 90.6 0.14 4.6E-06 50.9 3.3 22 408-429 3-24 (214)
290 3bfv_A CAPA1, CAPB2, membrane 90.5 0.41 1.4E-05 49.7 7.1 34 406-440 83-117 (271)
291 1rj9_A FTSY, signal recognitio 90.5 0.22 7.7E-06 52.8 5.1 36 406-442 103-138 (304)
292 2gno_A DNA polymerase III, gam 90.4 0.27 9.1E-06 52.2 5.6 23 406-428 19-41 (305)
293 2ce7_A Cell division protein F 90.4 0.13 4.6E-06 58.0 3.4 22 407-428 51-72 (476)
294 3uie_A Adenylyl-sulfate kinase 90.4 0.16 5.4E-06 49.9 3.6 39 391-430 12-50 (200)
295 3zq6_A Putative arsenical pump 90.4 0.23 7.8E-06 53.0 5.1 36 406-442 15-50 (324)
296 2v54_A DTMP kinase, thymidylat 90.4 0.11 3.7E-06 50.7 2.3 24 406-429 5-28 (204)
297 1ye8_A Protein THEP1, hypothet 90.2 0.17 5.8E-06 49.3 3.6 23 407-429 2-24 (178)
298 3tau_A Guanylate kinase, GMP k 90.2 0.16 5.3E-06 50.4 3.3 23 405-427 8-30 (208)
299 2p5t_B PEZT; postsegregational 90.2 0.1 3.5E-06 53.5 2.1 22 407-428 34-55 (253)
300 1m7g_A Adenylylsulfate kinase; 90.1 0.22 7.5E-06 49.3 4.4 38 392-430 13-50 (211)
301 2bbw_A Adenylate kinase 4, AK4 90.0 0.18 6.1E-06 51.2 3.7 25 405-429 27-51 (246)
302 2eyu_A Twitching motility prot 90.0 0.25 8.7E-06 51.1 4.9 37 405-441 25-61 (261)
303 1kgd_A CASK, peripheral plasma 89.8 0.2 6.7E-06 48.4 3.6 24 405-428 5-28 (180)
304 1e9r_A Conjugal transfer prote 89.8 0.24 8.3E-06 54.7 4.9 43 405-448 53-95 (437)
305 1cke_A CK, MSSA, protein (cyti 89.7 0.2 7E-06 49.6 3.8 23 406-428 6-28 (227)
306 4eaq_A DTMP kinase, thymidylat 89.7 0.31 1.1E-05 49.3 5.2 33 406-440 27-59 (229)
307 4gp7_A Metallophosphoesterase; 89.6 0.2 6.8E-06 48.1 3.5 20 405-424 9-28 (171)
308 3m6a_A ATP-dependent protease 89.6 0.18 6.1E-06 57.9 3.7 25 405-429 108-132 (543)
309 3cmu_A Protein RECA, recombina 89.6 0.66 2.3E-05 60.6 9.2 40 405-445 1427-1466(2050)
310 3tr0_A Guanylate kinase, GMP k 89.5 0.19 6.5E-06 49.0 3.3 24 405-428 7-30 (205)
311 2j41_A Guanylate kinase; GMP, 89.5 0.19 6.5E-06 48.9 3.4 23 405-427 6-28 (207)
312 3cio_A ETK, tyrosine-protein k 89.5 0.49 1.7E-05 49.8 6.8 34 406-440 105-139 (299)
313 4a74_A DNA repair and recombin 89.5 0.25 8.4E-06 48.9 4.2 26 405-430 25-50 (231)
314 3lv8_A DTMP kinase, thymidylat 89.4 0.56 1.9E-05 47.9 6.9 41 405-445 27-68 (236)
315 1gtv_A TMK, thymidylate kinase 89.3 0.12 4E-06 50.9 1.6 24 407-430 2-25 (214)
316 1r6b_X CLPA protein; AAA+, N-t 89.3 0.32 1.1E-05 57.8 5.7 39 393-431 192-233 (758)
317 2pez_A Bifunctional 3'-phospho 89.3 0.36 1.2E-05 46.2 5.0 26 406-431 6-31 (179)
318 3bs4_A Uncharacterized protein 89.2 0.33 1.1E-05 50.4 5.1 54 405-460 21-74 (260)
319 1jjv_A Dephospho-COA kinase; P 89.1 0.19 6.5E-06 49.3 3.0 21 407-427 4-24 (206)
320 3v9p_A DTMP kinase, thymidylat 89.1 0.52 1.8E-05 47.8 6.3 28 405-432 25-52 (227)
321 1ihu_A Arsenical pump-driving 89.1 0.33 1.1E-05 56.0 5.5 37 405-442 8-44 (589)
322 1c9k_A COBU, adenosylcobinamid 89.0 0.16 5.6E-06 49.8 2.4 46 407-457 1-46 (180)
323 3cf2_A TER ATPase, transitiona 89.0 0.13 4.3E-06 61.8 1.9 21 407-427 240-260 (806)
324 2dhr_A FTSH; AAA+ protein, hex 88.8 0.18 6.1E-06 57.3 2.9 21 408-428 67-87 (499)
325 3c8u_A Fructokinase; YP_612366 88.7 0.24 8.3E-06 48.9 3.5 25 406-430 23-47 (208)
326 4tmk_A Protein (thymidylate ki 88.7 0.7 2.4E-05 46.3 6.9 48 406-453 4-52 (213)
327 3ake_A Cytidylate kinase; CMP 88.7 0.28 9.4E-06 47.8 3.8 24 406-429 3-26 (208)
328 3k1j_A LON protease, ATP-depen 88.7 0.28 9.5E-06 57.0 4.4 35 395-429 49-84 (604)
329 1qvr_A CLPB protein; coiled co 88.4 0.48 1.6E-05 57.3 6.5 38 394-431 177-217 (854)
330 1ex7_A Guanylate kinase; subst 88.3 0.28 9.6E-06 48.3 3.6 22 406-427 2-23 (186)
331 3pxi_A Negative regulator of g 88.3 0.34 1.2E-05 57.7 5.0 24 407-430 523-546 (758)
332 2wsm_A Hydrogenase expression/ 88.3 0.42 1.4E-05 47.0 4.9 34 405-440 30-63 (221)
333 2woo_A ATPase GET3; tail-ancho 88.2 0.41 1.4E-05 51.2 5.1 36 405-441 19-54 (329)
334 3iqw_A Tail-anchored protein t 88.1 0.36 1.2E-05 51.9 4.6 37 405-442 16-52 (334)
335 1uj2_A Uridine-cytidine kinase 88.1 0.24 8.2E-06 50.5 3.1 22 407-428 24-45 (252)
336 1byi_A Dethiobiotin synthase; 88.1 0.48 1.6E-05 46.8 5.2 34 407-441 4-37 (224)
337 2qm8_A GTPase/ATPase; G protei 88.1 0.44 1.5E-05 51.2 5.2 36 406-442 56-91 (337)
338 2oze_A ORF delta'; para, walke 88.0 0.74 2.5E-05 47.8 6.8 46 394-440 21-71 (298)
339 2www_A Methylmalonic aciduria 88.0 0.46 1.6E-05 51.3 5.3 36 406-442 75-110 (349)
340 2orv_A Thymidine kinase; TP4A 88.0 0.42 1.4E-05 48.8 4.7 38 405-443 19-56 (234)
341 3a00_A Guanylate kinase, GMP k 88.0 0.25 8.5E-06 47.9 2.9 23 406-428 2-24 (186)
342 3f9v_A Minichromosome maintena 87.9 0.19 6.4E-06 58.4 2.3 20 407-426 329-348 (595)
343 3nwj_A ATSK2; P loop, shikimat 87.8 0.34 1.2E-05 49.9 3.9 25 405-429 48-72 (250)
344 1tf7_A KAIC; homohexamer, hexa 87.6 0.62 2.1E-05 53.0 6.4 48 405-454 281-328 (525)
345 1ltq_A Polynucleotide kinase; 87.4 0.29 9.8E-06 51.0 3.2 21 407-427 4-24 (301)
346 2if2_A Dephospho-COA kinase; a 87.4 0.28 9.5E-06 47.9 2.9 21 407-427 3-23 (204)
347 3cf2_A TER ATPase, transitiona 87.4 0.19 6.5E-06 60.3 2.0 51 408-462 514-574 (806)
348 2oap_1 GSPE-2, type II secreti 87.4 0.39 1.3E-05 54.7 4.5 38 391-428 245-283 (511)
349 3lda_A DNA repair protein RAD5 87.3 0.39 1.3E-05 53.0 4.4 26 405-430 178-203 (400)
350 1hyq_A MIND, cell division inh 87.2 0.55 1.9E-05 47.7 5.2 34 407-441 5-38 (263)
351 1f2t_A RAD50 ABC-ATPase; DNA d 87.1 0.34 1.2E-05 45.6 3.2 26 405-430 23-48 (149)
352 3kjh_A CO dehydrogenase/acetyl 87.1 0.3 1E-05 48.8 3.0 30 410-440 5-34 (254)
353 2ph1_A Nucleotide-binding prot 87.0 0.7 2.4E-05 47.3 5.8 35 406-441 20-54 (262)
354 2qt1_A Nicotinamide riboside k 87.0 0.3 1E-05 47.9 2.9 21 406-426 22-42 (207)
355 2p67_A LAO/AO transport system 86.9 0.53 1.8E-05 50.5 5.1 35 406-441 57-91 (341)
356 1r6b_X CLPA protein; AAA+, N-t 86.9 0.35 1.2E-05 57.5 4.0 23 407-429 490-512 (758)
357 1svm_A Large T antigen; AAA+ f 86.8 0.38 1.3E-05 52.6 3.9 24 405-428 169-192 (377)
358 3r20_A Cytidylate kinase; stru 86.8 0.38 1.3E-05 49.1 3.6 24 406-429 10-33 (233)
359 3q9l_A Septum site-determining 86.5 0.54 1.8E-05 47.5 4.6 33 407-440 5-37 (260)
360 3io3_A DEHA2D07832P; chaperone 86.5 0.55 1.9E-05 50.8 4.9 37 405-442 18-56 (348)
361 4dzz_A Plasmid partitioning pr 86.4 0.48 1.6E-05 46.0 4.0 33 408-441 5-37 (206)
362 1g3q_A MIND ATPase, cell divis 86.4 0.56 1.9E-05 46.7 4.6 34 407-441 5-38 (237)
363 2woj_A ATPase GET3; tail-ancho 86.2 0.56 1.9E-05 50.7 4.8 38 405-443 18-57 (354)
364 1cp2_A CP2, nitrogenase iron p 86.2 0.59 2E-05 47.7 4.7 31 409-440 5-35 (269)
365 2afh_E Nitrogenase iron protei 86.2 0.64 2.2E-05 48.2 5.1 32 408-440 5-36 (289)
366 2i3b_A HCR-ntpase, human cance 86.2 0.47 1.6E-05 46.7 3.8 25 406-430 2-26 (189)
367 1lvg_A Guanylate kinase, GMP k 86.1 0.44 1.5E-05 46.8 3.6 24 405-428 4-27 (198)
368 2hf9_A Probable hydrogenase ni 86.1 1.5 5E-05 43.2 7.5 67 393-464 23-94 (226)
369 1qvr_A CLPB protein; coiled co 86.1 0.39 1.3E-05 58.1 3.8 24 407-430 590-613 (854)
370 3end_A Light-independent proto 86.1 0.63 2.1E-05 48.7 5.0 33 407-440 43-75 (307)
371 3kta_A Chromosome segregation 86.0 0.39 1.3E-05 45.9 3.1 25 405-429 26-50 (182)
372 3asz_A Uridine kinase; cytidin 86.0 0.43 1.5E-05 46.8 3.4 23 406-428 7-29 (211)
373 1z6t_A APAF-1, apoptotic prote 85.9 0.62 2.1E-05 53.3 5.3 36 393-428 130-170 (591)
374 2grj_A Dephospho-COA kinase; T 85.9 0.46 1.6E-05 46.8 3.6 23 406-428 13-35 (192)
375 3crm_A TRNA delta(2)-isopenten 85.9 0.35 1.2E-05 51.8 2.9 23 406-428 6-28 (323)
376 1uf9_A TT1252 protein; P-loop, 85.8 0.4 1.4E-05 46.4 3.1 21 407-427 10-30 (203)
377 3cwq_A Para family chromosome 85.6 0.67 2.3E-05 45.9 4.7 32 407-440 3-34 (209)
378 3ea0_A ATPase, para family; al 85.3 0.65 2.2E-05 46.4 4.5 35 407-441 7-41 (245)
379 3tqc_A Pantothenate kinase; bi 85.2 0.75 2.6E-05 49.1 5.1 34 407-441 94-129 (321)
380 3lnc_A Guanylate kinase, GMP k 85.0 0.4 1.4E-05 48.0 2.7 22 405-426 27-48 (231)
381 2qmh_A HPR kinase/phosphorylas 84.9 0.46 1.6E-05 47.5 3.0 23 405-427 34-56 (205)
382 3ney_A 55 kDa erythrocyte memb 84.9 0.56 1.9E-05 46.6 3.6 23 405-427 19-41 (197)
383 3l0o_A Transcription terminati 84.9 1.2 4E-05 49.0 6.4 38 395-432 162-202 (427)
384 3ice_A Transcription terminati 84.8 1.2 4.1E-05 49.0 6.4 61 393-453 159-225 (422)
385 3qks_A DNA double-strand break 84.8 0.49 1.7E-05 46.8 3.2 27 405-431 23-49 (203)
386 2v9p_A Replication protein E1; 84.8 0.55 1.9E-05 49.8 3.8 33 405-441 126-158 (305)
387 3cmw_A Protein RECA, recombina 84.7 0.58 2E-05 60.3 4.5 43 405-448 383-425 (1706)
388 1vht_A Dephospho-COA kinase; s 84.7 0.47 1.6E-05 46.9 3.0 20 407-426 6-25 (218)
389 1tf7_A KAIC; homohexamer, hexa 84.6 1.2 4E-05 50.7 6.7 39 405-443 39-78 (525)
390 3la6_A Tyrosine-protein kinase 84.5 1.1 3.9E-05 46.8 6.1 33 407-440 95-127 (286)
391 3ld9_A DTMP kinase, thymidylat 84.0 1.3 4.4E-05 44.8 6.0 43 406-449 22-67 (223)
392 3cmw_A Protein RECA, recombina 84.0 0.83 2.8E-05 58.9 5.5 41 405-446 732-772 (1706)
393 2f6r_A COA synthase, bifunctio 83.7 0.51 1.7E-05 49.2 2.9 20 407-426 77-96 (281)
394 3d3q_A TRNA delta(2)-isopenten 83.3 0.56 1.9E-05 50.6 3.1 24 406-429 8-31 (340)
395 4e22_A Cytidylate kinase; P-lo 83.1 0.63 2.2E-05 47.5 3.3 24 405-428 27-50 (252)
396 2jeo_A Uridine-cytidine kinase 83.1 0.69 2.4E-05 46.8 3.6 23 407-429 27-49 (245)
397 3igf_A ALL4481 protein; two-do 83.0 0.61 2.1E-05 51.0 3.3 36 406-442 3-38 (374)
398 3gmt_A Adenylate kinase; ssgci 83.0 0.59 2E-05 47.6 3.0 22 408-429 11-32 (230)
399 3zvl_A Bifunctional polynucleo 82.9 0.4 1.4E-05 53.0 1.8 23 405-427 258-280 (416)
400 1pzn_A RAD51, DNA repair and r 82.9 0.56 1.9E-05 50.6 2.9 25 405-429 131-155 (349)
401 1q3t_A Cytidylate kinase; nucl 82.9 0.72 2.5E-05 46.4 3.6 24 406-429 17-40 (236)
402 3hjn_A DTMP kinase, thymidylat 82.6 2.1 7E-05 42.2 6.7 40 407-447 2-42 (197)
403 1ypw_A Transitional endoplasmi 82.5 0.4 1.4E-05 57.7 1.7 24 406-429 512-535 (806)
404 1odf_A YGR205W, hypothetical 3 82.4 0.75 2.6E-05 48.3 3.6 25 406-430 32-56 (290)
405 3ez2_A Plasmid partition prote 82.3 1.1 3.6E-05 49.0 4.9 51 391-441 84-150 (398)
406 1znw_A Guanylate kinase, GMP k 82.2 0.76 2.6E-05 45.2 3.4 24 405-428 20-43 (207)
407 3fkq_A NTRC-like two-domain pr 82.2 0.96 3.3E-05 49.0 4.4 34 407-441 146-179 (373)
408 1ypw_A Transitional endoplasmi 82.1 0.49 1.7E-05 56.9 2.2 22 406-427 239-260 (806)
409 1z6g_A Guanylate kinase; struc 82.0 0.75 2.5E-05 45.9 3.3 31 405-439 23-53 (218)
410 2ga8_A Hypothetical 39.9 kDa p 82.0 0.75 2.6E-05 49.9 3.4 23 407-429 26-48 (359)
411 3exa_A TRNA delta(2)-isopenten 82.0 0.55 1.9E-05 50.1 2.4 25 405-429 3-27 (322)
412 2h92_A Cytidylate kinase; ross 82.0 0.69 2.3E-05 45.6 3.0 21 407-427 5-25 (219)
413 1wcv_1 SOJ, segregation protei 81.7 0.72 2.5E-05 46.9 3.1 33 407-440 9-41 (257)
414 3tmk_A Thymidylate kinase; pho 81.7 0.82 2.8E-05 46.0 3.4 24 406-429 6-29 (216)
415 3k9g_A PF-32 protein; ssgcid, 81.4 0.79 2.7E-05 46.8 3.3 32 407-440 30-61 (267)
416 1a7j_A Phosphoribulokinase; tr 81.3 0.7 2.4E-05 48.5 2.9 24 406-429 6-29 (290)
417 3a8t_A Adenylate isopentenyltr 81.2 0.52 1.8E-05 50.7 1.8 23 406-428 41-63 (339)
418 2xj4_A MIPZ; replication, cell 81.2 1 3.5E-05 46.7 4.1 33 407-440 7-39 (286)
419 2ocp_A DGK, deoxyguanosine kin 81.1 0.69 2.4E-05 46.6 2.7 23 407-429 4-26 (241)
420 1s96_A Guanylate kinase, GMP k 81.0 0.88 3E-05 45.7 3.3 23 405-427 16-38 (219)
421 3cmu_A Protein RECA, recombina 80.9 1.2 4E-05 58.4 5.2 41 405-446 383-423 (2050)
422 3aez_A Pantothenate kinase; tr 80.8 0.91 3.1E-05 48.2 3.6 24 406-429 91-114 (312)
423 3foz_A TRNA delta(2)-isopenten 80.8 0.71 2.4E-05 49.2 2.6 23 406-428 11-33 (316)
424 3pg5_A Uncharacterized protein 80.7 0.69 2.4E-05 50.0 2.6 34 407-441 4-37 (361)
425 3jux_A Protein translocase sub 80.6 1.2 4.3E-05 52.5 4.8 71 393-466 78-152 (822)
426 3fwy_A Light-independent proto 80.5 1.5 5.3E-05 46.5 5.2 36 405-441 48-83 (314)
427 2axn_A 6-phosphofructo-2-kinas 80.3 0.91 3.1E-05 51.7 3.6 24 406-429 36-59 (520)
428 1sq5_A Pantothenate kinase; P- 80.3 0.94 3.2E-05 47.8 3.4 33 407-440 82-116 (308)
429 4hlc_A DTMP kinase, thymidylat 79.8 2.4 8.1E-05 42.0 6.0 45 407-453 4-49 (205)
430 3eph_A TRNA isopentenyltransfe 79.8 0.9 3.1E-05 50.1 3.2 24 406-429 3-26 (409)
431 1x6v_B Bifunctional 3'-phospho 79.6 1.6 5.6E-05 50.8 5.4 44 390-433 34-80 (630)
432 4akg_A Glutathione S-transfera 78.5 1.3 4.4E-05 59.8 4.5 30 398-427 1259-1289(2695)
433 1nij_A Hypothetical protein YJ 78.4 1 3.4E-05 47.8 3.0 34 406-442 5-38 (318)
434 3fdi_A Uncharacterized protein 78.3 1.2 4E-05 44.1 3.2 25 405-429 6-30 (201)
435 2obl_A ESCN; ATPase, hydrolase 78.2 1.6 5.4E-05 47.1 4.5 47 396-443 59-108 (347)
436 3tqf_A HPR(Ser) kinase; transf 78.1 1.1 3.9E-05 43.7 2.9 22 406-427 17-38 (181)
437 1sky_E F1-ATPase, F1-ATP synth 77.8 1.6 5.6E-05 48.9 4.6 53 405-457 151-205 (473)
438 1ihu_A Arsenical pump-driving 77.7 1.9 6.4E-05 49.7 5.2 35 405-440 327-361 (589)
439 3qkt_A DNA double-strand break 77.5 1.3 4.3E-05 47.4 3.4 26 405-430 23-48 (339)
440 2lv9_A Histone-lysine N-methyl 77.2 1.8 6.3E-05 37.9 3.8 25 143-170 29-54 (98)
441 3qf7_A RAD50; ABC-ATPase, ATPa 77.1 1.3 4.5E-05 48.0 3.4 26 405-430 23-48 (365)
442 2ck3_D ATP synthase subunit be 76.8 4.5 0.00015 45.5 7.7 63 396-458 141-208 (482)
443 2f1r_A Molybdopterin-guanine d 76.5 0.95 3.2E-05 43.7 1.9 27 406-432 3-29 (171)
444 2gza_A Type IV secretion syste 76.5 1.2 4.3E-05 48.1 3.0 24 405-428 175-198 (361)
445 1p5z_B DCK, deoxycytidine kina 76.3 0.52 1.8E-05 48.2 -0.0 23 406-428 25-47 (263)
446 2yv5_A YJEQ protein; hydrolase 76.2 2 7E-05 45.1 4.5 42 396-439 156-197 (302)
447 1htw_A HI0065; nucleotide-bind 76.1 1.5 5E-05 41.8 3.1 33 405-439 33-65 (158)
448 2pt7_A CAG-ALFA; ATPase, prote 76.1 1 3.6E-05 48.1 2.3 24 405-428 171-194 (330)
449 3ez9_A Para; DNA binding, wing 75.8 1.1 3.9E-05 48.8 2.6 49 391-440 87-152 (403)
450 2rcn_A Probable GTPase ENGC; Y 75.6 2.1 7.2E-05 46.4 4.5 30 397-426 207-236 (358)
451 1bif_A 6-phosphofructo-2-kinas 74.7 1.7 5.7E-05 48.7 3.6 24 407-430 41-64 (469)
452 2dyk_A GTP-binding protein; GT 74.6 1.6 5.6E-05 39.8 2.9 19 408-426 4-22 (161)
453 1u0l_A Probable GTPase ENGC; p 74.4 2.3 7.7E-05 44.7 4.3 31 396-426 160-190 (301)
454 2f9l_A RAB11B, member RAS onco 73.9 1.7 5.7E-05 42.0 2.9 19 408-426 8-26 (199)
455 1nrj_B SR-beta, signal recogni 73.8 1.8 6E-05 42.3 3.1 22 406-427 13-34 (218)
456 2a5y_B CED-4; apoptosis; HET: 73.7 3 0.0001 47.5 5.4 63 393-455 134-208 (549)
457 1m8p_A Sulfate adenylyltransfe 73.5 2.8 9.6E-05 48.3 5.1 34 407-440 398-431 (573)
458 2gks_A Bifunctional SAT/APS ki 73.2 3 0.0001 47.8 5.2 34 407-441 374-407 (546)
459 1oix_A RAS-related protein RAB 72.9 1.7 6E-05 41.7 2.8 20 407-426 31-50 (191)
460 1tq4_A IIGP1, interferon-induc 72.8 2.1 7.2E-05 47.3 3.7 36 392-427 55-91 (413)
461 1z2a_A RAS-related protein RAB 72.4 2 6.7E-05 39.5 2.9 19 408-426 8-26 (168)
462 1fx0_B ATP synthase beta chain 72.2 3.6 0.00012 46.4 5.4 62 397-458 154-220 (498)
463 1kao_A RAP2A; GTP-binding prot 72.2 2 6.9E-05 39.2 2.9 19 408-426 6-24 (167)
464 3of5_A Dethiobiotin synthetase 72.2 3.5 0.00012 41.5 4.9 34 407-441 6-40 (228)
465 2wji_A Ferrous iron transport 72.1 2 6.9E-05 40.0 2.9 20 407-426 5-24 (165)
466 2ce2_X GTPase HRAS; signaling 71.6 2 6.9E-05 39.0 2.8 19 408-426 6-24 (166)
467 2onk_A Molybdate/tungstate ABC 71.6 2.1 7.2E-05 43.5 3.1 34 406-440 25-58 (240)
468 2ged_A SR-beta, signal recogni 71.5 2.1 7.1E-05 40.7 2.9 21 406-426 49-69 (193)
469 1dek_A Deoxynucleoside monopho 71.4 4.5 0.00015 41.2 5.6 43 407-455 3-45 (241)
470 3hdt_A Putative kinase; struct 71.3 2.4 8.2E-05 42.7 3.4 24 406-429 15-38 (223)
471 2pcj_A ABC transporter, lipopr 71.2 2.1 7.2E-05 42.9 3.0 35 405-440 30-64 (224)
472 3cr8_A Sulfate adenylyltranfer 70.7 2.5 8.6E-05 48.5 3.8 33 406-438 370-402 (552)
473 1wms_A RAB-9, RAB9, RAS-relate 70.6 2.3 7.7E-05 39.6 2.9 19 408-426 10-28 (177)
474 2cbz_A Multidrug resistance-as 70.4 2.3 8E-05 43.0 3.2 35 405-440 31-65 (237)
475 1g16_A RAS-related protein SEC 70.4 2.2 7.6E-05 39.2 2.8 19 408-426 6-24 (170)
476 1ek0_A Protein (GTP-binding pr 70.3 2.3 8E-05 38.9 2.9 19 408-426 6-24 (170)
477 1sgw_A Putative ABC transporte 70.3 2.3 7.9E-05 42.5 3.1 36 405-441 35-70 (214)
478 1ky3_A GTP-binding protein YPT 70.1 2.3 8E-05 39.5 2.9 19 408-426 11-29 (182)
479 2dpy_A FLII, flagellum-specifi 69.8 4.9 0.00017 44.7 5.9 55 396-451 145-202 (438)
480 3tif_A Uncharacterized ABC tra 69.8 2.4 8.4E-05 42.8 3.2 36 405-441 31-66 (235)
481 1u8z_A RAS-related protein RAL 69.8 2.4 8.4E-05 38.6 2.9 19 408-426 7-25 (168)
482 3auy_A DNA double-strand break 69.6 2.4 8.4E-05 45.7 3.3 26 405-430 25-50 (371)
483 2erx_A GTP-binding protein DI- 69.5 2.5 8.5E-05 38.8 2.9 19 408-426 6-24 (172)
484 2d2e_A SUFC protein; ABC-ATPas 69.3 2.7 9.2E-05 42.9 3.3 36 405-440 29-65 (250)
485 1z0j_A RAB-22, RAS-related pro 69.0 2.6 8.9E-05 38.7 2.9 19 408-426 9-27 (170)
486 2nzj_A GTP-binding protein REM 69.0 2.6 8.8E-05 39.0 2.9 19 408-426 7-25 (175)
487 1vt4_I APAF-1 related killer D 68.9 5.5 0.00019 49.2 6.4 35 393-427 134-172 (1221)
488 1r2q_A RAS-related protein RAB 68.5 2.7 9.2E-05 38.5 2.9 19 408-426 9-27 (170)
489 3q85_A GTP-binding protein REM 68.4 2.7 9.3E-05 38.7 2.9 18 408-425 5-22 (169)
490 1svi_A GTP-binding protein YSX 68.3 2.5 8.7E-05 40.1 2.8 21 406-426 24-44 (195)
491 1ji0_A ABC transporter; ATP bi 68.3 2.8 9.4E-05 42.5 3.2 36 405-441 32-67 (240)
492 1z08_A RAS-related protein RAB 68.2 2.7 9.4E-05 38.6 2.9 19 408-426 9-27 (170)
493 1b0u_A Histidine permease; ABC 68.1 2.7 9.4E-05 43.2 3.2 35 405-440 32-66 (262)
494 1g6h_A High-affinity branched- 68.0 2.8 9.5E-05 43.0 3.2 36 405-441 33-68 (257)
495 1c1y_A RAS-related protein RAP 67.9 2.8 9.7E-05 38.3 2.9 19 408-426 6-24 (167)
496 2pze_A Cystic fibrosis transme 67.9 2.8 9.7E-05 42.1 3.2 35 405-440 34-68 (229)
497 2lkc_A Translation initiation 67.8 2.8 9.6E-05 39.0 2.9 21 406-426 9-29 (178)
498 2zu0_C Probable ATP-dependent 67.8 3 0.0001 43.1 3.3 37 405-441 46-83 (267)
499 2ius_A DNA translocase FTSK; n 67.8 3.1 0.00011 47.2 3.7 39 405-443 167-208 (512)
500 2ff7_A Alpha-hemolysin translo 67.8 2.8 9.7E-05 42.7 3.2 36 405-441 35-70 (247)
No 1
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=2.5e-126 Score=1142.21 Aligned_cols=627 Identities=72% Similarity=1.243 Sum_probs=562.2
Q ss_pred ccCCcccccccCCCCCCceEecCCCccCeeeeCCCCCCCcchhhhhHhhcCcceeeecCCCCCcccceeeeccccccccc
Q 004121 138 ADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFL 217 (772)
Q Consensus 138 ~~~~~~~c~ycg~~~~~~~~~c~~~~c~~wfcn~~~~~~~shi~~hlv~~~~~~~~lh~~~~~~~~~lecy~c~~~nvf~ 217 (772)
+++|+|||+|||||+|+|||+|++ |+||||||+|+|+|||||+||||||||||+||||||||||+||||+||++|||+
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~--~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~ 79 (800)
T 2wjy_A 2 KDLPIHACSYCGIHDPACVVYCNT--SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFL 79 (800)
T ss_dssp CCCCTTSCTTTCCCCGGGEEEETT--TTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTT
T ss_pred CCCCchhccccCCCCCCeEEEcCC--CCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCCCceee
Confidence 568999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCceEEEEcchhHHH----------------------------------------------------------
Q 004121 218 LGFISAKTESVVVLLCREPCLN---------------------------------------------------------- 239 (772)
Q Consensus 218 lgf~~~~~~~~~~~~~r~~~~~---------------------------------------------------------- 239 (772)
|||||+|+|+|||||||+||+.
T Consensus 80 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 159 (800)
T 2wjy_A 80 LGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENP 159 (800)
T ss_dssp CEEEC-----CCEECCTTTTSSTTC----------CEESBCSSSBCTTTSCCCCHHHHHHSCCCCHHHHHHHHHHHTTCT
T ss_pred eeceecccCceEEEEecCcccccchhhccCCCHHhcccccccccccHhhcCCCCHHHHhhhcCCCHHHHHHHHHHhccCc
Confidence 9999999999999999999976
Q ss_pred ---------------------------------------------HhhhcccccceEEEEEecCCceEEEEEEccCCCCC
Q 004121 240 ---------------------------------------------MMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNE 274 (772)
Q Consensus 240 ---------------------------------------------~~~e~~~~~~~~~~~~~~l~~k~~~~f~~~~~~~~ 274 (772)
.++|++...+++++|++++++|.+++|.++..+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (800)
T 2wjy_A 160 SATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSD 239 (800)
T ss_dssp TCCTTC--------CCCCCCSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECCEEEECTTCCEEEEECCCBCCC-
T ss_pred CcchhhhhhccccccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEEEecCCCeeEEEEEeccccCC
Confidence 45668888899999999999999999999887788
Q ss_pred cCCCCCCEEEEEecCCCCCCcceEEEEEEEecC--ccEEEEEeecCCCCccccCCCceEEEeeccchHHHHHHHHHHHHh
Q 004121 275 LRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTA--QEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAV 352 (772)
Q Consensus 275 ~~l~~GD~v~l~~~g~~~~~~~~~~g~V~~v~~--~~~v~lel~~~~~~p~~~~~~~~v~~~~~~~s~~R~~~AL~~~~~ 352 (772)
.+|.+||.|.|++.+. ....|.+.|+|+++.+ .++|.+++......|.....+|.++++|++++|+||+.||++++.
T Consensus 240 ~~l~~GD~v~l~~~~~-~~~~~~~~g~V~~v~~~~~~~v~l~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~aL~~~~~ 318 (800)
T 2wjy_A 240 MRLMQGDEICLRYKGD-LAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAV 318 (800)
T ss_dssp -CCCTTCEEEEEECSS-SSCCEEEEEEEEECSBTTBSCEEEEESCCTTCCTTCCSCEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCC-CCCCceeEEEEEEEcCCCCCEEEEEEccCCCCccccCCCceEEEeecCChHHHHHHHHHHHHH
Confidence 9999999999998876 4577999999999986 467899987666677777778999999999999999999999998
Q ss_pred hhcchhhhHhhhhcCCchhhhhhhccCCCCCCCCCCCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc
Q 004121 353 DETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (772)
Q Consensus 353 ~~~~~~~~i~~~llg~~~~~~~~~~~~p~~~~~~~~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (772)
++..+..++++.++++..++..++..+|..|..+....||++|++||..++.+++++|+||||||||+|+++++.++++.
T Consensus 319 ~e~~~~~~l~~~ll~~~~~~~~~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~ 398 (800)
T 2wjy_A 319 DETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ 398 (800)
T ss_dssp CTTSBCHHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred hhcchhHHHHHHhcCCCCCchhhcccCccccccccccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 88888889999999886655555555676676666788999999999999999999999999999999999999999875
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHhcCceEEEeccccccccCCchhhhhHHHHHhhccchhHHHHHHHHHhHhhhccCCch
Q 004121 433 GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS 512 (772)
Q Consensus 433 ~~~rILV~ApSN~AVD~L~erL~~~~~~vvRl~~~sre~i~~~~~~~~l~~~v~~~~~~~~~~l~kl~~l~~~~~~ls~~ 512 (772)
+..+||+|||||.|||+|.++|.+.+++++|+++.+++.+..++...++|..++.... ...++++.+++++.+.++..
T Consensus 399 ~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~--~~~l~~l~~~~~~~~~~~~~ 476 (800)
T 2wjy_A 399 GNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDS--MPELQKLQQLKDETGELSSA 476 (800)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCCGGGGGCCCTTGGGBHHHHHHTCTT--CHHHHHHHHHHTTTSCCCHH
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhCcceEeecccchhhhcchhhhhhHHHHHHcCcc--HHHHHHHHHHHHhhcccChH
Confidence 5679999999999999999999999999999999999888888888999998887654 35677777777777778877
Q ss_pred HHHHHHHHHHHHHHHHhhcccceeecccccCCcccccCCCcEEEEEcCCCCChhhhhhhhhcCCCeEEEecCCCCCCccc
Q 004121 513 DEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVI 592 (772)
Q Consensus 513 d~k~~~~l~~~~~~~il~~a~VI~~T~~~a~~~~L~~~~Fd~VIIDEAsQatEpe~LipL~~~~k~lILVGD~~QLpPvv 592 (772)
+++.|+.+.+..++.+++.++||++||++++...+....||+||||||+|+++|++|+|+..+++++||||||+||||++
T Consensus 477 ~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~l~~~~fd~viIDEAsQ~~e~~~li~l~~~~~~~ilvGD~~QLpPvv 556 (800)
T 2wjy_A 477 DEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV 556 (800)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSEEEEETGGGGCTTTTTCCCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCC
T ss_pred HHHHHHHHHHHHHHhhhccCCEEEEchhhhCChhhhcCCCCEEEEECCCCCCcHHHHHHHHhcCCeEEEecccccCCCee
Confidence 77888888888888999999999999999998888888999999999999999999999988889999999999999999
Q ss_pred cchHHHHhcchhhHHHHHHHCCCccEecccccCCchHHhHHHHhhhcCCcccccCccccccCCCCCCCCCCCCCCeEEEE
Q 004121 593 MCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYV 672 (772)
Q Consensus 593 ~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~~~p~~~~p~~f~~ 672 (772)
.+..+...|+..|+|+|++..+..+++|++||||||+|++|+|..||+|+|.++.....+...+..++|+.+..|++|++
T Consensus 557 ~s~~a~~~gl~~SlFerL~~~g~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~ 636 (800)
T 2wjy_A 557 MCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYV 636 (800)
T ss_dssp CCHHHHHTTTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCSGGGSCTTCCCCCSSTTSCEEEEE
T ss_pred cchhhhhcCcchHHHHHHHhCCCCceEehhhcCCCcHHHHhhHHHhcCCccccCCchhhhccccccccccCCCCCEEEEE
Confidence 99988889999999999999888899999999999999999999999999998887777766666789998899999999
Q ss_pred eCCceeecccCCCCCCHHHHHHHHHHHHHHHHCCCCCCeEEEEccchHHHHHHHHHHHHcCCcccccCCCeEEccCCCCC
Q 004121 673 QMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ 752 (772)
Q Consensus 673 ~~g~ee~~~~g~S~~N~~EA~~V~~iV~~Ll~~gv~~~~IgIITPY~aQv~~I~~~L~~~~~~~~~~~~~I~V~TVD~FQ 752 (772)
+.|.++....++|+.|..||+.|++++..|++.|+++.+|||||||++|+.+|++.|...+.+.......|+|+|||+||
T Consensus 637 ~~g~e~~~~~~~S~~N~~Ea~~V~~~v~~L~~~g~~~~dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQ 716 (800)
T 2wjy_A 637 TQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQ 716 (800)
T ss_dssp CCCCCEECSSBSCEECHHHHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGT
T ss_pred cCCceeecCCCCcccCHHHHHHHHHHHHHHHHcCCCcccEEEEeccHHHHHHHHHHHHhcCcccccccCceEEccccccC
Confidence 99988877789999999999999999999999999999999999999999999999987665443334579999999999
Q ss_pred CCcCCEEEEEeeecCCC
Q 004121 753 GREKDYIILSCVRSNEH 769 (772)
Q Consensus 753 GrEkDvIIlS~VRSn~~ 769 (772)
|+|+|+||+|+||+|..
T Consensus 717 G~E~dvVIlS~vrs~~~ 733 (800)
T 2wjy_A 717 GREKDFIILSCVRANEH 733 (800)
T ss_dssp TCCEEEEEEECCCCSCC
T ss_pred CCcCCEEEEEecCCCCc
Confidence 99999999999999975
No 2
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-125 Score=1131.49 Aligned_cols=626 Identities=59% Similarity=1.018 Sum_probs=540.6
Q ss_pred CccCCcccccccCCCCCCceEecCCCccCeeeeCCCCCCCcchhhhhHhhcCcceeeecCCCCCcccceeeecccccccc
Q 004121 137 KADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVF 216 (772)
Q Consensus 137 ~~~~~~~~c~ycg~~~~~~~~~c~~~~c~~wfcn~~~~~~~shi~~hlv~~~~~~~~lh~~~~~~~~~lecy~c~~~nvf 216 (772)
..++|+|||+|||||+|+|||+|++ |+||||||+|+|+|||||+||||||||||+||||||||||+||||+||+||||
T Consensus 6 ~~~~~~~~c~yc~~~~~~~~~~c~~--~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f 83 (802)
T 2xzl_A 6 SPSASDNSCAYCGIDSAKCVIKCNS--CKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVF 83 (802)
T ss_dssp ------CCCTTTCCCCTTTEEEETT--TCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTT
T ss_pred cccCChhhCcccCCCCCceEEEeCC--CCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCcee
Confidence 4578999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cccceeccCCceEEEEcchhHHH---------------------------------------------------------
Q 004121 217 LLGFISAKTESVVVLLCREPCLN--------------------------------------------------------- 239 (772)
Q Consensus 217 ~lgf~~~~~~~~~~~~~r~~~~~--------------------------------------------------------- 239 (772)
+|||||+|+|+|||||||+||++
T Consensus 84 ~lg~~~~~~~~~~~~~cr~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~e~~w~~~~~~ 163 (802)
T 2xzl_A 84 LLGFVSAKSEAVVVLLCRIPCAQTKNANWDTDQWQPLIEDRQLLSWVAEQPTEEEKLKARLITPSQISKLEAKWRSNKDA 163 (802)
T ss_dssp TEEEEC------CEEEETTTTTTCC---CCGGGCEESBCSSSBCTTTSCCCCTTGGGGSCCCCHHHHHHHHHHHTTCCCC
T ss_pred eeeeeeccCCceEEEEeCCcccchhhcCCcHhhCceeecccccchhhccCCCHHHhhhhcCCCHHHHHHHHHHHhhCcCC
Confidence 99999999999999999999975
Q ss_pred -------------------------------------------HhhhcccccceEEEEEecCCceEEEEEEccC-CCCCc
Q 004121 240 -------------------------------------------MMKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNEL 275 (772)
Q Consensus 240 -------------------------------------------~~~e~~~~~~~~~~~~~~l~~k~~~~f~~~~-~~~~~ 275 (772)
.++|++...++.++|+++++++.++.|.++. .+.+.
T Consensus 164 ~l~d~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (802)
T 2xzl_A 164 TINDIDAPEEQEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHISVSWSLALNNRHLASFTLSTFESNEL 243 (802)
T ss_dssp CC------------CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHCCC--CCBCEEEEECTTSCEEEEEC---------
T ss_pred chhhhhcccccccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhHhhccCceEeeeccCCCeEEEEEEecccccCCC
Confidence 4556778888999999999999999999886 56788
Q ss_pred CCCCCCEEEEEecCCCCCCcceEEEEEEEecC--ccEEEEEeecC-CCCccccCCCceEEEeeccchHHHHHHHHHHHHh
Q 004121 276 RLVPGDELRLRYSGDAAHPAWQSVGHVIKLTA--QEEVALELRAS-QGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAV 352 (772)
Q Consensus 276 ~l~~GD~v~l~~~g~~~~~~~~~~g~V~~v~~--~~~v~lel~~~-~~~p~~~~~~~~v~~~~~~~s~~R~~~AL~~~~~ 352 (772)
++.+||.|.+++.+. ....|.+.|+|+++.+ .++|.+++... ...|.+...+|.++++|++++|+||+.||++++.
T Consensus 244 ~~~~GD~v~l~~~~~-~~~~~~~~g~V~~v~~~~~~~v~v~~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~AL~~~~~ 322 (802)
T 2xzl_A 244 KVAIGDEMILWYSGM-QHPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKKFAI 322 (802)
T ss_dssp CCCTTCEEEEEECSS-SSSCEEEEEEEEECCC---CCEEEEECCCSSCCCTTCCSSEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCC-CCCceeEEEEEEEECCCCCCEEEEEEeCCCCCCccccCCCeEEEEEecCchHHHHHHHHHHHHh
Confidence 999999999998776 5567999999999986 47789988643 3346666778999999999999999999999998
Q ss_pred hhcchhhhHhhhhcCCchhhhhhhccCCCCCCCCCCCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc
Q 004121 353 DETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (772)
Q Consensus 353 ~~~~~~~~i~~~llg~~~~~~~~~~~~p~~~~~~~~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (772)
+..+++.++++.++|+..++..+...+|+.|..+.+..||++|++||..++..++++|+||||||||+|+++++.+|++.
T Consensus 323 ~~~~~~~~l~~~ll~~~~~~~~~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~ 402 (802)
T 2xzl_A 323 DKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI 402 (802)
T ss_dssp CTTSBCHHHHHHHHTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHhcCCccccccccccCcccccccccccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 77778888999999987665555555677776677789999999999999999999999999999999999999999875
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHhcCceEEEeccccccccCCchhhhhHHHHHhhccchhHHHHHHHHHhHhhhccCCch
Q 004121 433 GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS 512 (772)
Q Consensus 433 ~~~rILV~ApSN~AVD~L~erL~~~~~~vvRl~~~sre~i~~~~~~~~l~~~v~~~~~~~~~~l~kl~~l~~~~~~ls~~ 512 (772)
++.+||+|||||.|||+|.+||.+.+++++|+++++++.+...+...++|..++.... ..++++.+++.+.+.++..
T Consensus 403 ~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~---~~l~~l~~~~~~~~~ls~~ 479 (802)
T 2xzl_A 403 HKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAK---GELKNLLKLKDEVGELSAS 479 (802)
T ss_dssp HCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCCGGGTTSCCTTGGGBHHHHHHTTCC---THHHHHHHHHHHHSCCCHH
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhCccEEeecccchhhhcchhhhhhHHHHHHhhcH---HHHHHHHHHHHhhccCCHH
Confidence 5569999999999999999999999999999999988888888888889988876543 2566666666667777777
Q ss_pred HHHHHHHHHHHHHHHHhhcccceeecccccCCcccccCCCcEEEEEcCCCCChhhhhhhhhcCCCeEEEecCCCCCCccc
Q 004121 513 DEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVI 592 (772)
Q Consensus 513 d~k~~~~l~~~~~~~il~~a~VI~~T~~~a~~~~L~~~~Fd~VIIDEAsQatEpe~LipL~~~~k~lILVGD~~QLpPvv 592 (772)
+.+.|+.+.+..+..+++.++||++|+.+++...+.. +||+||||||+|+++|++|+|+..+++++||||||+||||++
T Consensus 480 ~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~L~~-~fd~viIDEA~q~~e~~~li~l~~~~~~lilvGD~~QL~pvv 558 (802)
T 2xzl_A 480 DTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLDT-KFRTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVI 558 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEETTGGGCTTCCS-CCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEechhhcChHHHhc-cCCEEEEECccccchHHHHHHHHhCCCEEEEEeCccccCCee
Confidence 7777777777777889999999999999998888877 999999999999999999999987789999999999999999
Q ss_pred cchHHHHhcchhhHHHHHHHCCCccEecccccCCchHHhHHHHhhhcCCcccccCccccccCCCCCCCCCCCCCCeEEEE
Q 004121 593 MCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYV 672 (772)
Q Consensus 593 ~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~~~p~~~~p~~f~~ 672 (772)
.+..+...++..|+|+|+...+..+++|++||||||+|++|+|+.||+|+|.++.+...+......++|+..+.|++|++
T Consensus 559 ~s~~a~~~gl~~slferl~~~~~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~ 638 (802)
T 2xzl_A 559 LERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWA 638 (802)
T ss_dssp CCHHHHHTTTTCCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTTTTCCTTCCCCCSSTTCCEEEEE
T ss_pred chhhhhhcCCchhHHHHHHhcCCCceEeeeecCCChHHHHHHHHHhcCCccccCCchhhhccccccCCCCCCCCCEEEEE
Confidence 99888889999999999999888899999999999999999999999999998887776666566689998889999999
Q ss_pred eCCceeecccCCCCCCHHHHHHHHHHHHHHHHCCCCCCeEEEEccchHHHHHHHHHHHHcCCcccccCCCeEEccCCCCC
Q 004121 673 QMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ 752 (772)
Q Consensus 673 ~~g~ee~~~~g~S~~N~~EA~~V~~iV~~Ll~~gv~~~~IgIITPY~aQv~~I~~~L~~~~~~~~~~~~~I~V~TVD~FQ 752 (772)
+.|.++....++|+.|..||+.|++++..|++.|+++++|||||||++|+.+|++.|...+.+.......|+|+|||+||
T Consensus 639 ~~g~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~g~~~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQ 718 (802)
T 2xzl_A 639 NYGREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQ 718 (802)
T ss_dssp CCCCCEECTTSSSEECHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHHT
T ss_pred cCCceeecCCCCCcCCHHHHHHHHHHHHHHHHcCCCcccEEEEcccHHHHHHHHHHHHHccccccccccceEEcchhhcC
Confidence 99988887889999999999999999999999999999999999999999999999987664433334579999999999
Q ss_pred CCcCCEEEEEeeecCCC
Q 004121 753 GREKDYIILSCVRSNEH 769 (772)
Q Consensus 753 GrEkDvIIlS~VRSn~~ 769 (772)
|+|+|+||+|+||+|..
T Consensus 719 G~E~dvVIlS~vrs~~~ 735 (802)
T 2xzl_A 719 GREKDYIILSCVRANEQ 735 (802)
T ss_dssp TCCEEEEEEECCCCCTT
T ss_pred CCccCEEEEEeccCCCC
Confidence 99999999999999964
No 3
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=6.9e-83 Score=750.92 Aligned_cols=536 Identities=71% Similarity=1.184 Sum_probs=462.0
Q ss_pred EEEcchhHHHHhhhcccccceEEEEEecCCceEEEEEEccCCCCCcCCCCCCEEEEEecCCCCCCcceEEEEEEEecC--
Q 004121 230 VLLCREPCLNMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTA-- 307 (772)
Q Consensus 230 ~~~~r~~~~~~~~e~~~~~~~~~~~~~~l~~k~~~~f~~~~~~~~~~l~~GD~v~l~~~g~~~~~~~~~~g~V~~v~~-- 307 (772)
+.++++.+ ..++|++.+++++++|++++++|.+++|.++..+.+.+|.+||.|.|++.+. ....|.+.|+|+++.+
T Consensus 20 l~~E~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~l~~~~~-~~~~~~~~g~v~~~~~~~ 97 (624)
T 2gk6_A 20 VKLEADYD-KKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGD-LAPLWKGIGHVIKVPDNY 97 (624)
T ss_dssp HHHHHHHH-HHHHHHTCEEEECEEEEECTTSCEEEEEECC-------CCTTCEEEEEECSS-SSCCCEEEEEEEECSCSS
T ss_pred HHHHHHHH-HHHHhhhhccCceEEeeecCCCceEEEEEecccccCCcCCCCCEEEEEECCC-CCCCcEEEEEEEEecCCC
Confidence 33444433 2568889999999999999999999999999888889999999999998776 5578999999999986
Q ss_pred ccEEEEEeecCCCCccccCCCceEEEeeccchHHHHHHHHHHHHhhhcchhhhHhhhhcCCchhhhhhhccCCCCCCCCC
Q 004121 308 QEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPG 387 (772)
Q Consensus 308 ~~~v~lel~~~~~~p~~~~~~~~v~~~~~~~s~~R~~~AL~~~~~~~~~~~~~i~~~llg~~~~~~~~~~~~p~~~~~~~ 387 (772)
+++|.|+++.....|.+....|.++++|++++|+||+.||++++.++.+++.++++.++|+..++..++..+|..|..+.
T Consensus 98 ~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 177 (624)
T 2gk6_A 98 GDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQG 177 (624)
T ss_dssp CSEEEEEESCCTTCCCSCCSSEEEEECCCCHHHHHHHHHHHHHHHCTTSBCSHHHHHHTTCCCCCCCCCCCCCSCCSCTT
T ss_pred CCEEEEEEccCCCCccccccceEEEEEeCCchHHHHHHHHHHHHhccccchHHHHHHhcCCCCccccccccCcccccccc
Confidence 57899999766666777777899999999999999999999999887778888999999987665555556777777677
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCceEEEeccc
Q 004121 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAK 467 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~~vvRl~~~ 467 (772)
++.||++|++||..++.+++++|+||||||||+|+++++.++++..+.+||+|||||.|||+|.++|.+.+++++|++++
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~~ 257 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 257 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCCT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeeccc
Confidence 78999999999999999999999999999999999999999987556799999999999999999999999999999999
Q ss_pred cccccCCchhhhhHHHHHhhccchhHHHHHHHHHhHhhhccCCchHHHHHHHHHHHHHHHHhhcccceeecccccCCccc
Q 004121 468 SREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRL 547 (772)
Q Consensus 468 sre~i~~~~~~~~l~~~v~~~~~~~~~~l~kl~~l~~~~~~ls~~d~k~~~~l~~~~~~~il~~a~VI~~T~~~a~~~~L 547 (772)
+++.+..++...++|..++.... ..+++++.+++++.++++..+.+.|+.+.+..+..+++.++||++||++++...+
T Consensus 258 ~r~~~~~~~~~~tl~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~~~l 335 (624)
T 2gk6_A 258 SREAIDSPVSFLALHNQIRNMDS--MPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRL 335 (624)
T ss_dssp GGGSCCCTTTTTBHHHHHTSCSS--CHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGGCGGG
T ss_pred cchhhccchhhhhHHHHHHhccc--hHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhcchhh
Confidence 99888888888889988876544 3556777766666677777777888888888888999999999999999998888
Q ss_pred ccCCCcEEEEEcCCCCChhhhhhhhhcCCCeEEEecCCCCCCccccchHHHHhcchhhHHHHHHHCCCccEecccccCCc
Q 004121 548 ANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMH 627 (772)
Q Consensus 548 ~~~~Fd~VIIDEAsQatEpe~LipL~~~~k~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~QYRmh 627 (772)
....||+||||||+|+++|++|+|+..+++++||||||+||||++.+..+...|+..|+|+|+...+..+++|++|||||
T Consensus 336 ~~~~fd~viIDEAsQ~~e~~~li~l~~~~~~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~~~~~~~L~~qYR~~ 415 (624)
T 2gk6_A 336 AKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMH 415 (624)
T ss_dssp TTCCCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHTTCCCEECCEECSSC
T ss_pred hcCCCCEEEEecccccCcHHHHHHHHhcCCeEEEecChhccCCeeecHHHHHcCCchhHHHHHHhcCCCcEEehhhhCcC
Confidence 88899999999999999999999998888999999999999999999988889999999999999888899999999999
Q ss_pred hHHhHHHHhhhcCCcccccCccccccCCCCCCCCCCCCCCeEEEEeCCceeecccCCCCCCHHHHHHHHHHHHHHHHCCC
Q 004121 628 PSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGV 707 (772)
Q Consensus 628 p~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iV~~Ll~~gv 707 (772)
|+|++|+|..||+|+|.++.....+......++|+.++.|++|+++.|.++....+.|+.|..||+.|++++..|++.|+
T Consensus 416 ~~I~~~~n~~fY~~~L~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~ 495 (624)
T 2gk6_A 416 PALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA 495 (624)
T ss_dssp HHHHHHHHHHHSTTCCEESSCTGGGCCTTCCCCCSSTTCCEEEEECCCCEECCTTSSCCEEHHHHHHHHHHHHHHHTTTC
T ss_pred hhHHhhhHHhhcCcccccCCchhhhcccccCCCCCCCCCCEEEEEcCCcceecCCCCCccCHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999887776666656678999889999999999988877788999999999999999999999999
Q ss_pred CCCeEEEEccchHHHHHHHHHHHHcCCcccccCCCeEEccCCCCCCCcCCEEEEEeeecCCC
Q 004121 708 VPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEH 769 (772)
Q Consensus 708 ~~~~IgIITPY~aQv~~I~~~L~~~~~~~~~~~~~I~V~TVD~FQGrEkDvIIlS~VRSn~~ 769 (772)
++.+|||||||++|+.+|++.|...+.+.......|+|+|||+|||+|+|+||+|+||||..
T Consensus 496 ~~~dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~~ 557 (624)
T 2gk6_A 496 KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEH 557 (624)
T ss_dssp CGGGEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC----
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhhccccccccCceEEechhhcCCcccCEEEEEeecCCCC
Confidence 99999999999999999999998766543333457999999999999999999999999864
No 4
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=1.7e-75 Score=690.91 Aligned_cols=504 Identities=28% Similarity=0.392 Sum_probs=376.5
Q ss_pred ceEEEEE-ecCCceEEEEEEccCCC-----CCcCCCCCCEEEEEecCCCCCCcceEEEEEEEecCccEEEEEeecCC--C
Q 004121 249 NVTIRWD-IGLNKKRVAYFVFPKED-----NELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQ--G 320 (772)
Q Consensus 249 ~~~~~~~-~~l~~k~~~~f~~~~~~-----~~~~l~~GD~v~l~~~g~~~~~~~~~~g~V~~v~~~~~v~lel~~~~--~ 320 (772)
++.+.+. .|++||.+..|...+.. ...+|.+||.|.|..... . ..+...|+|+++.. ..|.|.+.... .
T Consensus 47 ~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~Gd~v~~~~~~~-~-~~~~~~g~v~~~~~-~~i~v~~~~~~~~~ 123 (646)
T 4b3f_X 47 KLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAAN-E-GSQLATGILTRVTQ-KSVTVAFDESHDFQ 123 (646)
T ss_dssp EEEEEEEEECSSSCEEEEEEESCC---CCCCCCCCCTTCEEEEEETTT-T-SCCCEEEEEEEEET-TEEEEECC------
T ss_pred ceEEEEEEecCCCeEEEEEEecCCCCCCCCccCCCCCCCEEEEEecCC-C-CCceEEEEEEEEeC-CEEEEEECCccccc
Confidence 4555554 68999999989876522 245799999999965443 2 23446789999985 45666664332 2
Q ss_pred CccccCCCceEEEeeccchHHHHHHHHHHHHhhhcchhhhHhhhhcCCchhhhhhhccCCCCCCCCCCCCCCHHHHHHHH
Q 004121 321 VPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVK 400 (772)
Q Consensus 321 ~p~~~~~~~~v~~~~~~~s~~R~~~AL~~~~~~~~~~~~~i~~~llg~~~~~~~~~~~~p~~~~~~~~~~LN~sQ~~AV~ 400 (772)
........|++++.+++++|+||+.||..+..........+.+.|+|...+..... ..+..| ..+.||++|++||.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~r~~~al~~l~~~~~~~~~~l~~~l~~~~~p~~~~~-~~~~~~---~~~~LN~~Q~~AV~ 199 (646)
T 4b3f_X 124 LSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPASE-IHPLTF---FNTCLDTSQKEAVL 199 (646)
T ss_dssp -CCCSSCCEEEEEECCHHHHHHHHHHHHHHHTCCSSTTHHHHHHHTTSSCCCCCCC-CCCCCC---SSTTCCHHHHHHHH
T ss_pred cccCCCCcEEEEEeccchHHHHHHHHHHHhhhcccCchHHHHHHHcCCCCCCCccc-cCcccc---cCCCCCHHHHHHHH
Confidence 23344567999999999999999999999987655556667778888654322111 111111 23579999999999
Q ss_pred Hhhc-CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCceEEEeccccccccCCchhhh
Q 004121 401 SVLQ-RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHL 479 (772)
Q Consensus 401 ~aL~-~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~~vvRl~~~sre~i~~~~~~~ 479 (772)
.+|. ++++||+||||||||+|++++|.++++.+. +||||||||.|||+|++||...+.+++|+|++.+.. ..+...
T Consensus 200 ~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~-~ILv~a~TN~AvD~i~erL~~~~~~ilRlG~~~r~~--~~~~~~ 276 (646)
T 4b3f_X 200 FALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGL-KVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLL--ESIQQH 276 (646)
T ss_dssp HHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEEESSHHHHHHHHHHHHHTTCCEEECSCCSSCC--HHHHTT
T ss_pred HHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEcCchHHHHHHHHHHHhcCCceEEecchhhhh--hhhhhh
Confidence 9996 679999999999999999999999998864 999999999999999999999999999999887632 122223
Q ss_pred hHHHHHhhccch-hHHHHH-HHHHhHh---------hhccCCchH---HHHHHHHHHHHHHHHhhcccceeecccccCCc
Q 004121 480 TLHYQVRHLDTS-EKSELH-KLQQLKD---------EQGELSSSD---EKKYKALKRATEREISQSADVICCTCVGAGDP 545 (772)
Q Consensus 480 ~l~~~v~~~~~~-~~~~l~-kl~~l~~---------~~~~ls~~d---~k~~~~l~~~~~~~il~~a~VI~~T~~~a~~~ 545 (772)
+++..+...+.. ....++ .+..+.. +...+.... .+.++........+.+..++||++||.+++..
T Consensus 277 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~ 356 (646)
T 4b3f_X 277 SLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASAD 356 (646)
T ss_dssp BHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTCSS
T ss_pred hHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeehhhhhhh
Confidence 344333322210 001111 1110000 000000000 11222233344457889999999999998764
Q ss_pred ----ccccCCCcEEEEEcCCCCChhhhhhhhhcCCCeEEEecCCCCCCccccchHHHHhcchhhHHHHHHHCC--CccEe
Q 004121 546 ----RLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLG--LKPIR 619 (772)
Q Consensus 546 ----~L~~~~Fd~VIIDEAsQatEpe~LipL~~~~k~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~~g--~~~~~ 619 (772)
.+...+||+||||||+|++||++|+|+.. ++++||||||+||||++.+..+...|+..|+|+||.... ....+
T Consensus 357 ~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL~~-~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v~~ 435 (646)
T 4b3f_X 357 GPLKLLPESYFDVVVIDECAQALEASCWIPLLK-ARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRT 435 (646)
T ss_dssp SGGGGSCTTCCSEEEETTGGGSCHHHHTTTGGG-SSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTEEE
T ss_pred hHHHhhhhccCCEEEEcCccccchHHHHhhccc-cceEEEcCCccccCceecchhhhhccccchHHHHHHHhcCCceeee
Confidence 34566899999999999999999999964 799999999999999999999999999999999998753 33468
Q ss_pred cccccCCchHHhHHHHhhhcCCcccccCccccccCCCCCC--CCCCCCCCeEEEEeCCc---eeecccCCCCCCHHHHHH
Q 004121 620 LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF--PWPVPNRPMFFYVQMGQ---EEISASGTSYLNRTEAAN 694 (772)
Q Consensus 620 L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~--~~p~~~~p~~f~~~~g~---ee~~~~g~S~~N~~EA~~ 694 (772)
|++||||||.|++|+|+.||+|+|.++.+...+....+.. .++....|++|+++.|. +.....+.|+.|..||+.
T Consensus 436 L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~~g~~~~~~~~~~~~s~~N~~EA~~ 515 (646)
T 4b3f_X 436 LTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRL 515 (646)
T ss_dssp CCEESSSCHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEECTTSSCCCCC-----CCCCHHHHHH
T ss_pred cccccCCcHHHHhhhHHhhcCCccccCcchhhhhhccccccccccccCCceEEEecCCCccccccccCCccccCHHHHHH
Confidence 9999999999999999999999999988777665443322 23345689999999885 333456789999999999
Q ss_pred HHHHHHHHHHCCCCCCeEEEEccchHHHHHHHHHHHHcCCcccccCCCeEEccCCCCCCCcCCEEEEEeeecCCCC
Q 004121 695 VEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ 770 (772)
Q Consensus 695 V~~iV~~Ll~~gv~~~~IgIITPY~aQv~~I~~~L~~~~~~~~~~~~~I~V~TVD~FQGrEkDvIIlS~VRSn~~~ 770 (772)
|.++++.|++.|+++.+|||||||++|+.+|++.|... ..+|+|+|||+|||+|+|+|||||||||..+
T Consensus 516 V~~~v~~L~~~gv~~~dIgVItpYraQ~~~l~~~l~~~-------~~~i~v~TVd~fQG~E~dvII~S~vrsn~~~ 584 (646)
T 4b3f_X 516 VSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHR-------HPELEIKSVDGFQGREKEAVILSFVRSNRKG 584 (646)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTT-------CTTCEEEEGGGGTTCCEEEEEEECCCCCTTC
T ss_pred HHHHHHHHHhcCCCcCcEEEECCCHHHHHHHHHHHHHh-------CCCCEECChhhcccccCCEEEEEeccCCCCC
Confidence 99999999999999999999999999999999998643 3579999999999999999999999999763
No 5
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.92 E-value=5.5e-25 Score=258.88 Aligned_cols=315 Identities=17% Similarity=0.216 Sum_probs=185.3
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcC---CCcEEEEcCcHHHHHHHHHHHHhc-C-----c
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG---QGQVLVCAPSNVAVDQLAEKISAT-G-----L 459 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~---~~rILV~ApSN~AVD~L~erL~~~-~-----~ 459 (772)
..||++|++||... .+..+|.||||||||+|++++|.++++.+ +.+||++|+||.|++++.+||.+. + +
T Consensus 8 ~~Ln~~Q~~av~~~--~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~~ 85 (647)
T 3lfu_A 8 DSLNDKQREAVAAP--RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGM 85 (647)
T ss_dssp TTCCHHHHHHHTCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTTC
T ss_pred hcCCHHHHHHHhCC--CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccCCc
Confidence 47999999999843 67889999999999999999999998762 368999999999999999999764 1 1
Q ss_pred eEEEecccccc---------ccCCchhh-------hhHHHHHhhccch-----hHHHHHHHHHhHhhhc---cCC---ch
Q 004121 460 KVVRLCAKSRE---------AVSSPVEH-------LTLHYQVRHLDTS-----EKSELHKLQQLKDEQG---ELS---SS 512 (772)
Q Consensus 460 ~vvRl~~~sre---------~i~~~~~~-------~~l~~~v~~~~~~-----~~~~l~kl~~l~~~~~---~ls---~~ 512 (772)
.+..+.+-... ........ .-+...+...... .......+..++...- .+. ..
T Consensus 86 ~v~Tfhs~~~~il~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~ 165 (647)
T 3lfu_A 86 WVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNP 165 (647)
T ss_dssp EEEEHHHHHHHHHHHTTGGGTCCTTCEEECHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHTTCCCCCC----CC
T ss_pred EEEcHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHcCCCHHHHHhccch
Confidence 11111110000 00000000 0000001100000 0000111111111110 010 01
Q ss_pred HHHHHHHHHHHHHH-----HHhhcccceeeccccc-CCcccc---cCCCcEEEEEcCCCCChhhh--hhhhhcCCCeEEE
Q 004121 513 DEKKYKALKRATER-----EISQSADVICCTCVGA-GDPRLA---NFRFRQVLIDESTQATEPEC--LIPLVLGAKQVVL 581 (772)
Q Consensus 513 d~k~~~~l~~~~~~-----~il~~a~VI~~T~~~a-~~~~L~---~~~Fd~VIIDEAsQatEpe~--LipL~~~~k~lIL 581 (772)
..+.+..+.+.++. ..++..+++..+.... ..+.+. ..+|++|+|||+++++..+. +..+....+++++
T Consensus 166 ~~~~~~~i~~~y~~~~~~~~~~df~dl~~~~~~~l~~~~~~~~~~~~~~~~ilVDE~QD~~~~q~~ll~~l~~~~~~l~~ 245 (647)
T 3lfu_A 166 VEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMI 245 (647)
T ss_dssp HHHHHHHHHHHHHHHHHHHTEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEESSGGGCCHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCHHHHHHHHhhCCEEEEECcccCCHHHHHHHHHHhcCCCEEEE
Confidence 11111122221111 1122222222221111 111111 22699999999999998873 3334445679999
Q ss_pred ecCCCCCCccccchHHHHhcchhhHHHHHHHC--CCccEecccccCCchHHhHHHHhhhcCCcccccCccccccCCCCCC
Q 004121 582 VGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF 659 (772)
Q Consensus 582 VGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~~--g~~~~~L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~ 659 (772)
|||++| .|++. .|-....|.++... +...+.|+.||||++.|.++++.+|+.+....+... +
T Consensus 246 vGD~~Q---sIy~f----rga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~~n~~~~~~~~~~~~~~---------~ 309 (647)
T 3lfu_A 246 VGDDDQ---SIYGW----RGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKL---------W 309 (647)
T ss_dssp EECGGG---CCCGG----GTCCTTHHHHHHHHCTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCCCC---------B
T ss_pred EcCchh---hhccc----cCCCHHHHHHHHHhCCCCeEEEcccCCCCCHHHHHHHHHHHHhcccccCCcc---------c
Confidence 999999 33332 23345566666543 345789999999999999999999987543211110 1
Q ss_pred CCCCCCCCeEEEEeCCceeecccCCCCCCHHHHHHHHHHHHHHHHCCCCCCeEEEEccchHHHHHHHHHHHHcC
Q 004121 660 PWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNG 733 (772)
Q Consensus 660 ~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iV~~Ll~~gv~~~~IgIITPY~aQv~~I~~~L~~~~ 733 (772)
+....+.++.++.... ...|++.|++.|.+|++.|+++.+|+||+|++.|...|...|...+
T Consensus 310 ~~~~~~~~~~~~~~~~------------~~~e~~~ia~~I~~l~~~g~~~~diaVL~r~~~~~~~l~~~l~~~~ 371 (647)
T 3lfu_A 310 TDGADGEPISLYCAFN------------ELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQAS 371 (647)
T ss_dssp CSSCCCCCEEEEEEEE------------HHHHHHHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHHHHHTT
T ss_pred cCCCCCCceEEEecCC------------hHHHHHHHHHHHHHHHHcCCCccCEEEEEeCchhHHHHHHHHHHCC
Confidence 1111233455443321 2469999999999999999999999999999999999999998765
No 6
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.89 E-value=1.2e-22 Score=236.22 Aligned_cols=225 Identities=21% Similarity=0.250 Sum_probs=151.2
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCceEEEecccc
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKS 468 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~~vvRl~~~s 468 (772)
..||++|++|+..++.+++++|+||||||||+++..++..+...+ .+|+++|||+.|+++|.+++...
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g-~~Vl~~ApT~~Aa~~L~e~~~~~----------- 255 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLG-LEVGLCAPTGKAARRLGEVTGRT----------- 255 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHHTSC-----------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcC-CeEEEecCcHHHHHHhHhhhccc-----------
Confidence 469999999999999999999999999999999999998877765 59999999999999999876311
Q ss_pred ccccCCchhhhhHHHHHhhccchhHHHHHHHHHhHhhhccCCchHHHHHHHHHHHHHHHHhhcccceeecccccCCcccc
Q 004121 469 REAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLA 548 (772)
Q Consensus 469 re~i~~~~~~~~l~~~v~~~~~~~~~~l~kl~~l~~~~~~ls~~d~k~~~~l~~~~~~~il~~a~VI~~T~~~a~~~~L~ 548 (772)
..++|..+.... + ......-.
T Consensus 256 ---------a~Tih~ll~~~~------------------------------------------------~--~~~~~~~~ 276 (574)
T 3e1s_A 256 ---------ASTVHRLLGYGP------------------------------------------------Q--GFRHNHLE 276 (574)
T ss_dssp ---------EEEHHHHTTEET------------------------------------------------T--EESCSSSS
T ss_pred ---------HHHHHHHHcCCc------------------------------------------------c--hhhhhhcc
Confidence 012222211000 0 00011112
Q ss_pred cCCCcEEEEEcCCCCChhhh--hhhhhcCCCeEEEecCCCCCCccccchHHHHhcchhhHHHHHHHCCCccEecccccCC
Q 004121 549 NFRFRQVLIDESTQATEPEC--LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRM 626 (772)
Q Consensus 549 ~~~Fd~VIIDEAsQatEpe~--LipL~~~~k~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~QYRm 626 (772)
...+|+||||||+++..... ++.......++|||||+.||||+..+ +.|..++. ..+.+.|+.+||+
T Consensus 277 ~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvGD~~QL~~v~~g----------~~~~~l~~-~~~~~~L~~~~R~ 345 (574)
T 3e1s_A 277 PAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDAG----------LPLLALAQ-AAPTIKLTQVYRQ 345 (574)
T ss_dssp CCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEECTTSCCCSSSC----------CHHHHHHH-HSCEEECCCCCHH
T ss_pred cccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEEEecccccCCccCC----------cHHHHHHh-cCCEEEcceeEeC
Confidence 34799999999999987752 33333356799999999999998643 34555555 6678999999999
Q ss_pred c--hHHhHHHHhhhcCCcccccCccccccCCCCCCCCCCCCCCeEEEEeCCceeecccCCCCCCHHHHHHHHHHHHHHHH
Q 004121 627 H--PSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLR 704 (772)
Q Consensus 627 h--p~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iV~~Ll~ 704 (772)
+ ..|..+++.+ ..|.+.... ....|+.....++ .+..+.+++.
T Consensus 346 ~~~s~I~~~a~~i-~~g~~~~~~------------------~d~~~~~~~~~~~------------~~~~i~~~~~---- 390 (574)
T 3e1s_A 346 AAKNPIIQAAHGL-LHGEAPAWG------------------DKRLNLTEIEPDG------------GARRVALMVR---- 390 (574)
T ss_dssp HHTCHHHHHHHHH-HTTCCCCCC------------------BTTEEEEECCSTT------------CHHHHHHHHH----
T ss_pred CCccHHHHHHHHH-hCCCCcccC------------------CCeEEEeCCCHHH------------HHHHHHHHHh----
Confidence 8 6799987654 444432100 1223333221111 2344444444
Q ss_pred CCCCC-CeEEEEccchHH---HHHHHHHHHH
Q 004121 705 SGVVP-SQIGVITPYEGQ---RAYIVNYMSR 731 (772)
Q Consensus 705 ~gv~~-~~IgIITPY~aQ---v~~I~~~L~~ 731 (772)
|+.+ .+|.||||.+.. +..|.+.++.
T Consensus 391 -~~~~~~~~~VL~~~~~g~~gv~~lN~~l~~ 420 (574)
T 3e1s_A 391 -ELGGPGAVQVLTPMRKGPLGMDHLNYHLQA 420 (574)
T ss_dssp -HTTSGGGCEEEESCSSSTTSHHHHHHHHHH
T ss_pred -ccCcccCeEEEEeecCCchhHHHHHHHHHH
Confidence 5555 799999998765 5556555543
No 7
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.88 E-value=1.2e-21 Score=222.12 Aligned_cols=244 Identities=15% Similarity=0.164 Sum_probs=153.6
Q ss_pred CCCCCCCHHHHHHHHHhhc-----CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCce
Q 004121 386 PGLPELNASQVFAVKSVLQ-----RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLK 460 (772)
Q Consensus 386 ~~~~~LN~sQ~~AV~~aL~-----~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~~ 460 (772)
..+..||+.|++|+..++. .+.++|.||||||||+++..++..|...+..+|+++||||.|+++|.+++.. .
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~---~ 97 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGK---E 97 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSS---C
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhcc---c
Confidence 3456899999999998764 3599999999999999999999999888766899999999999999998721 1
Q ss_pred EEEeccccccccCCchhhhhHHHHHhhccchhHHHHHHHHHhHhhhccCCchHHHHHHHHHHHHHHHHhhcccceeeccc
Q 004121 461 VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCV 540 (772)
Q Consensus 461 vvRl~~~sre~i~~~~~~~~l~~~v~~~~~~~~~~l~kl~~l~~~~~~ls~~d~k~~~~l~~~~~~~il~~a~VI~~T~~ 540 (772)
..++|..+..... . . .... .+..
T Consensus 98 -----------------~~T~h~~~~~~~~---------------~--~--------------------~~~~-~~~~-- 120 (459)
T 3upu_A 98 -----------------ASTIHSILKINPV---------------T--Y--------------------EENV-LFEQ-- 120 (459)
T ss_dssp -----------------EEEHHHHHTEEEE---------------E--C--------------------SSCE-EEEE--
T ss_pred -----------------hhhHHHHhccCcc---------------c--c--------------------cccc-hhcc--
Confidence 1133332221100 0 0 0000 0000
Q ss_pred ccCCcccccCCCcEEEEEcCCCCChhhh--hhhhhcCCCeEEEecCCCCCCccccchHHHHhcchhhHHHHHHHCCCccE
Q 004121 541 GAGDPRLANFRFRQVLIDESTQATEPEC--LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPI 618 (772)
Q Consensus 541 ~a~~~~L~~~~Fd~VIIDEAsQatEpe~--LipL~~~~k~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~~g~~~~ 618 (772)
.......++++||||||++++.... |+.+.....++++|||+.||+|+..+... ..+ ..++. ..+...+
T Consensus 121 ---~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~~--~~l-~~~~~---~~~~~~~ 191 (459)
T 3upu_A 121 ---KEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGENT--AYI-SPFFT---HKDFYQC 191 (459)
T ss_dssp ---CSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSCS--CCC-CGGGT---CTTEEEE
T ss_pred ---cccccccCCCEEEEECchhCCHHHHHHHHHhccCCCEEEEECCHHHcCCccCCcch--HhH-HHHHh---cCCCcEE
Confidence 0011123699999999999886542 22222346799999999999998764310 111 11111 1345678
Q ss_pred ecccccCCchHHhHHHHhhhcCCcccccCccccccCCCCCCCCCCCCCCeEEEEeCCceeecccCCCCCCHHHHHHHHHH
Q 004121 619 RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKI 698 (772)
Q Consensus 619 ~L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~i 698 (772)
.|+.+||+++.|.++++.+..+..+.. + .. ..+-++ ...+. .| +...
T Consensus 192 ~L~~~~R~~~~I~~~a~~lr~g~~~~~------~---------~~-~~~~v~-~~~~~-------------~~---~~~~ 238 (459)
T 3upu_A 192 ELTEVKRSNAPIIDVATDVRNGKWIYD------K---------VV-DGHGVR-GFTGD-------------TA---LRDF 238 (459)
T ss_dssp ECCCCCCCCCHHHHHHHHHHTTCCCCC------E---------EE-TTEEEE-ECCSS-------------SS---HHHH
T ss_pred eceeeeeCCcHHHHHHHHHHcCCCcch------h---------cc-CCCCeE-ecCch-------------HH---HHHH
Confidence 999999999999999988754322110 0 00 011111 11111 11 2333
Q ss_pred HHHHHHCCCCCC---eEEEEccchHHHHHHHHHHHH
Q 004121 699 VTTFLRSGVVPS---QIGVITPYEGQRAYIVNYMSR 731 (772)
Q Consensus 699 V~~Ll~~gv~~~---~IgIITPY~aQv~~I~~~L~~ 731 (772)
+......+..++ +++||++.++|+..+.+.|+.
T Consensus 239 i~~~~~~~~~~~~~~~~aIL~rtN~~~~~~n~~lr~ 274 (459)
T 3upu_A 239 MVNYFSIVKSLDDLFENRVMAFTNKSVDKLNSIIRK 274 (459)
T ss_dssp HHHHHHHTTTCSCCTTEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchhhceEEEEehHhHHHHHHHHHHH
Confidence 333433222334 999999999999999998876
No 8
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.87 E-value=4.7e-22 Score=237.64 Aligned_cols=314 Identities=16% Similarity=0.197 Sum_probs=181.8
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHhc-C-----c
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISAT-G-----L 459 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~---~~~rILV~ApSN~AVD~L~erL~~~-~-----~ 459 (772)
..||++|++||... .+..+|.|+||||||+|++++|.+|+.. +..+||++|+||.|+++|.+|+.+. + +
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~ 87 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDV 87 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTS
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccCc
Confidence 46999999999864 6788999999999999999999999875 3468999999999999999999764 1 1
Q ss_pred eEEEeccccc-------cc--cCCchhhh------h-HHHHHhhccch-----hHHHHHHHHHhHhhhc---cCC----c
Q 004121 460 KVVRLCAKSR-------EA--VSSPVEHL------T-LHYQVRHLDTS-----EKSELHKLQQLKDEQG---ELS----S 511 (772)
Q Consensus 460 ~vvRl~~~sr-------e~--i~~~~~~~------~-l~~~v~~~~~~-----~~~~l~kl~~l~~~~~---~ls----~ 511 (772)
.+.-+.+-.. .. .......+ . +...++.+... .......+..++.... .+. .
T Consensus 88 ~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~ 167 (724)
T 1pjr_A 88 WISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRAST 167 (724)
T ss_dssp EEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHHHHHHHHHHHTTSCTTTTCCHHHHHHHHHHHHHTTCCHHHHTTC---
T ss_pred EEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHcCCCHHHHHHhccC
Confidence 1111110000 00 00000000 0 00001100000 0000111111111100 000 0
Q ss_pred hHHHHHHHHHHHHHHH-----Hhhcccceeeccccc-CCcccc---cCCCcEEEEEcCCCCChhhh--hhhhhcCCCeEE
Q 004121 512 SDEKKYKALKRATERE-----ISQSADVICCTCVGA-GDPRLA---NFRFRQVLIDESTQATEPEC--LIPLVLGAKQVV 580 (772)
Q Consensus 512 ~d~k~~~~l~~~~~~~-----il~~a~VI~~T~~~a-~~~~L~---~~~Fd~VIIDEAsQatEpe~--LipL~~~~k~lI 580 (772)
...+....+...++.. .++..|++.-+.... ..+.+. ..+|++|+|||+|+++..+. +-.|.....+++
T Consensus 168 ~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~~~~ll~~~~~v~~~~~~rf~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~ 247 (724)
T 1pjr_A 168 YYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNIC 247 (724)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHCHHHHHHHHHHCSEEEESSGGGCCHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhCHHHHHHHHhhCCEEEEEhHhcCCHHHHHHHHHHHcCCCeEE
Confidence 0011111111111111 222233333222211 112221 23799999999999999883 223333346899
Q ss_pred EecCCCCCCccccchHHHHhcchhhHHHHHHH--CCCccEecccccCCchHHhHHHHhhhcCCcccccCccccccCCCCC
Q 004121 581 LVGDHCQLGPVIMCKKAARAGLAQSLFERLVL--LGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGID 658 (772)
Q Consensus 581 LVGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~--~g~~~~~L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~ 658 (772)
+|||++| .|++.. |-....|.++.. .+...+.|..|||+++.|.+++|.+|.++......
T Consensus 248 vVGD~~Q---sIY~fR----GA~~~~~~~f~~~~~~~~~i~L~~NyRSt~~Il~~an~li~~n~~~~~k----------- 309 (724)
T 1pjr_A 248 AVGDADQ---SIYRWR----GADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPK----------- 309 (724)
T ss_dssp EEECGGG---CCCGGG----TCCTHHHHTHHHHSTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCC-----------
T ss_pred EEECchh---hccccc----CCCHHHHHHHHHHCCCCcEEECCCCCCCCHHHHHHHHHHHHhCccccCc-----------
Confidence 9999999 344332 333344444433 23567899999999999999999999765422110
Q ss_pred CCCC--CCCCCeEEEEeCCceeecccCCCCCCHHHHHHHHHHHHHHHH-CCCCCCeEEEEccchHHHHHHHHHHHHcCC
Q 004121 659 FPWP--VPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLR-SGVVPSQIGVITPYEGQRAYIVNYMSRNGA 734 (772)
Q Consensus 659 ~~~p--~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iV~~Ll~-~gv~~~~IgIITPY~aQv~~I~~~L~~~~~ 734 (772)
..|+ ..+.++.++.... ...||..|++.|..|+. .|+++.+|+||++.++|...|.+.|.+.+.
T Consensus 310 ~l~~~~~~g~~i~~~~~~~------------~~~Ea~~va~~I~~l~~~~g~~~~diAIL~R~~~~~~~le~~L~~~gI 376 (724)
T 1pjr_A 310 RIWTENPEGKPILYYEAMN------------EADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKANI 376 (724)
T ss_dssp CCBCSSCCCCCEEEEEEEE------------HHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHHHHHHHHHTTC
T ss_pred ccccccCCCCceEEEecCC------------HHHHHHHHHHHHHHHHHhcCCChhheeeeeecchhHHHHHHHHHHcCC
Confidence 1122 1233444443211 24699999999999987 789999999999999999999999987653
No 9
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.87 E-value=1.3e-21 Score=231.81 Aligned_cols=311 Identities=16% Similarity=0.164 Sum_probs=180.2
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHhc-C------c
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISAT-G------L 459 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~---~~~rILV~ApSN~AVD~L~erL~~~-~------~ 459 (772)
.||++|++||... .+..+|.|+||||||+|+++.+.+|+.. +..+||++|+||.|+++|.+|+.+. + +
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCC
Confidence 5999999999864 7889999999999999999999998865 3568999999999999999999764 1 1
Q ss_pred eEEEeccccccc---------cCCchhhh---hHHHHHhhcc----chhHHHHH----HHHHhHhhhccCCchH------
Q 004121 460 KVVRLCAKSREA---------VSSPVEHL---TLHYQVRHLD----TSEKSELH----KLQQLKDEQGELSSSD------ 513 (772)
Q Consensus 460 ~vvRl~~~sre~---------i~~~~~~~---~l~~~v~~~~----~~~~~~l~----kl~~l~~~~~~ls~~d------ 513 (772)
.+.-+.+-.... .......+ .....++... ........ .+..++... +...+
T Consensus 80 ~v~Tfhs~~~~il~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~--~~~~~~~~~~~ 157 (673)
T 1uaa_A 80 MISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDL--KTPSQAAASAI 157 (673)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTCCCCCCEECHHHHHHHHHHHTSTTSCSCHHHHHHHHHHHHHHHTTT--CCTTHHHHTCC
T ss_pred EEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHcC--CCHHHHHHHhh
Confidence 111111100000 00000000 0000000000 00000011 111111110 11000
Q ss_pred ---HHHHHHHHHHHHHH-----Hhhcccceeeccccc-CCcccc---cCCCcEEEEEcCCCCChhhh--hhhhhcCCCeE
Q 004121 514 ---EKKYKALKRATERE-----ISQSADVICCTCVGA-GDPRLA---NFRFRQVLIDESTQATEPEC--LIPLVLGAKQV 579 (772)
Q Consensus 514 ---~k~~~~l~~~~~~~-----il~~a~VI~~T~~~a-~~~~L~---~~~Fd~VIIDEAsQatEpe~--LipL~~~~k~l 579 (772)
.+....+...++.. .++..|++..+.... ..+.+. ..+|++|+|||+|+++..+. +-.|.....++
T Consensus 158 ~~~~~~~~~i~~~Y~~~l~~~~~lDfdDll~~~~~lL~~~~~~~~~~~~~~~~ilVDEfQDt~~~Q~~ll~~L~~~~~~l 237 (673)
T 1uaa_A 158 GERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARF 237 (673)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHTTCSEEEESCGGGCBHHHHHHHHHHHTTTCCE
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhChHHHHHHHhhCcEEEEeccccCCHHHHHHHHHHhcCCCeE
Confidence 11111111111111 122222222221111 111111 24799999999999998883 33343345789
Q ss_pred EEecCCCCCCccccchHHHHhcchhhHHHHHHHC--CCccEecccccCCchHHhHHHHhhhcCCcccccCccccccCCCC
Q 004121 580 VLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGI 657 (772)
Q Consensus 580 ILVGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~~--g~~~~~L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~ 657 (772)
++|||++| .|++. .|-....|.++... +...+.|+.|||+++.|.++++.+|..+......
T Consensus 238 ~~vGD~~Q---sIy~f----rga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~an~~~~~~~~~~~~---------- 300 (673)
T 1uaa_A 238 TVVGDDDQ---SIYSW----RGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEK---------- 300 (673)
T ss_dssp EEECCGGG---CCCGG----GTBCTTHHHHHHHHSTTCEEECCCCBSSSCHHHHHHHHHHHHTSCCSSCC----------
T ss_pred EEEeCchh---hhhhc----cCCCHHHHHHHHHhCCCCeEEECCCCCCCChHHHHHHHHHHHhchhcccc----------
Confidence 99999999 34332 23344555555442 4567899999999999999999999764322100
Q ss_pred CCCCC--CCCCCeEEEEeCCceeecccCCCCCCHHHHHHHHHHHHHHH-HCCCCCCeEEEEccchHHHHHHHHHHHHcCC
Q 004121 658 DFPWP--VPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL-RSGVVPSQIGVITPYEGQRAYIVNYMSRNGA 734 (772)
Q Consensus 658 ~~~~p--~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iV~~Ll-~~gv~~~~IgIITPY~aQv~~I~~~L~~~~~ 734 (772)
..|+ ..+.++.++.... ...|++.|++.|..++ ..|+++.+|+||++.+.|...|.+.|...+.
T Consensus 301 -~l~~~~~~g~~i~~~~~~~------------~~~e~~~va~~I~~l~~~~g~~~~diaVL~r~~~~~~~l~~~L~~~gI 367 (673)
T 1uaa_A 301 -RLFSELGYGAELKVLSANN------------EEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFLMQNRI 367 (673)
T ss_dssp -CCCBSSCCCCCBEEEECSS------------HHHHHHHHHHHHHHHHHHHCCCTTTEEEEESSSGGGTTHHHHHHHTTC
T ss_pred -cccccCCCCCCceEEecCC------------HHHHHHHHHHHHHHHHhccCCCccCEEEEEechhhHHHHHHHHHHCCC
Confidence 0121 1123344333211 2468999999999988 6799999999999999999999999987653
No 10
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.77 E-value=6.2e-19 Score=206.57 Aligned_cols=199 Identities=24% Similarity=0.308 Sum_probs=130.6
Q ss_pred CHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHhcCceEEEecccc
Q 004121 392 NASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKS 468 (772)
Q Consensus 392 N~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~---~~~rILV~ApSN~AVD~L~erL~~~~~~vvRl~~~s 468 (772)
++.|+.|+..++.+++++|+||||||||+|++.++..+.+. ...+|+++|||+.|+++|.+.+......+ .+....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL-PLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcC-CCCHHH
Confidence 68999999999999999999999999999999999888753 33589999999999999999875431110 010000
Q ss_pred ccccCCchhhhhHHHHHhhccchhHHHHHHHHHhHhhhccCCchHHHHHHHHHHHHHHHHhhcccceeecccccCCcccc
Q 004121 469 REAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLA 548 (772)
Q Consensus 469 re~i~~~~~~~~l~~~v~~~~~~~~~~l~kl~~l~~~~~~ls~~d~k~~~~l~~~~~~~il~~a~VI~~T~~~a~~~~L~ 548 (772)
+..+ +....++|..+..... ... + ......
T Consensus 230 ~~~~--~~~~~Tih~ll~~~~~-----------------------~~~------------~-------------~~~~~~ 259 (608)
T 1w36_D 230 KKRI--PEDASTLHRLLGAQPG-----------------------SQR------------L-------------RHHAGN 259 (608)
T ss_dssp CCSC--SCCCBTTTSCC-----------------------------------------------------------CTTS
T ss_pred Hhcc--chhhhhhHhhhccCCC-----------------------chH------------H-------------HhccCC
Confidence 0000 0011122211100000 000 0 000111
Q ss_pred cCCCcEEEEEcCCCCChhh--hhhhhhcCCCeEEEecCCCCCCccccchH------HHHhcchhhHHHHHHHCC------
Q 004121 549 NFRFRQVLIDESTQATEPE--CLIPLVLGAKQVVLVGDHCQLGPVIMCKK------AARAGLAQSLFERLVLLG------ 614 (772)
Q Consensus 549 ~~~Fd~VIIDEAsQatEpe--~LipL~~~~k~lILVGD~~QLpPvv~s~~------a~~~gl~~SLFeRL~~~g------ 614 (772)
...+|+||||||+++..+. .++.......++||+||+.||||+..+.. ....|++.++++++....
T Consensus 260 ~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~ 339 (608)
T 1w36_D 260 PLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 (608)
T ss_dssp CCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCC
T ss_pred CCCCCEEEEechhhCCHHHHHHHHHhCCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHHhcCccccc
Confidence 2379999999999998764 34433345689999999999999976531 123578889999887531
Q ss_pred -----Cc-----cEecccccCCchH--HhHHHHhhhcCCc
Q 004121 615 -----LK-----PIRLQVQYRMHPS--LSEFPSNSFYEGT 642 (772)
Q Consensus 615 -----~~-----~~~L~~QYRmhp~--I~~f~S~~FY~g~ 642 (772)
.+ .++|+.+||+++. |..+++.+ ..|.
T Consensus 340 ~~~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~~i-~~g~ 378 (608)
T 1w36_D 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI-NRGD 378 (608)
T ss_dssp CSTTTTHHHHTTEEECCCCCCSSCCTTHHHHHHHH-TSCH
T ss_pred ccccccccccccEEecceeeeeCCcchHHHHHHHH-hcCC
Confidence 11 4799999999977 99887554 4453
No 11
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.68 E-value=1.5e-16 Score=177.79 Aligned_cols=228 Identities=18% Similarity=0.211 Sum_probs=139.4
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCceEEEeccccccccCCchhhhhHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQ 484 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~~vvRl~~~sre~i~~~~~~~~l~~~ 484 (772)
..+.+|.|+||||||+.+.+++. . .++||+|||+.|++++.+++.+.+.. ........+++..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~-----~-~~~lVlTpT~~aa~~l~~kl~~~~~~-----------~~~~~~V~T~dsf 223 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN-----F-EEDLILVPGRQAAEMIRRRANASGII-----------VATKDNVRTVDSF 223 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC-----T-TTCEEEESCHHHHHHHHHHHTTTSCC-----------CCCTTTEEEHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc-----c-CCeEEEeCCHHHHHHHHHHhhhcCcc-----------ccccceEEEeHHh
Confidence 46899999999999999877652 1 58999999999999999998543210 0001111122211
Q ss_pred HhhccchhHHHHHHHHHhHhhhccCCchHHHHHHHHHHHHHHHHhhcccceeecccccCCcccccCCCcEEEEEcCCCCC
Q 004121 485 VRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQAT 564 (772)
Q Consensus 485 v~~~~~~~~~~l~kl~~l~~~~~~ls~~d~k~~~~l~~~~~~~il~~a~VI~~T~~~a~~~~L~~~~Fd~VIIDEAsQat 564 (772)
+++.. ......+|+||||||+++.
T Consensus 224 -------------------------------------------L~~~~-------------~~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 224 -------------------------------------------LMNYG-------------KGARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp -------------------------------------------HHTTT-------------SSCCCCCSEEEEETGGGSC
T ss_pred -------------------------------------------hcCCC-------------CCCCCcCCEEEEeCcccCC
Confidence 11100 0112358999999999887
Q ss_pred hhhh--hhhhhcCCCeEEEecCCCCCCccccchHHHHhcchhhHHHHHHHCCCccEecccccCCchHHhHHHHhhhcCCc
Q 004121 565 EPEC--LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGT 642 (772)
Q Consensus 565 Epe~--LipL~~~~k~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~QYRmhp~I~~f~S~~FY~g~ 642 (772)
.... ++.+ ..+.++||+||++||||+..... ..+..+ |.++. ......+..+|||.+.++.|.+.. |+|.
T Consensus 248 ~~~l~~l~~~-~~~~~vilvGD~~Qlp~v~~~~~---~~~~~~-~~~l~--~~~~~~~~~SyR~p~dv~~lLs~l-Y~~~ 319 (446)
T 3vkw_A 248 TGCVNFLVEM-SLCDIAYVYGDTQQIPYINRVTG---FPYPAH-FAKLE--VDEVETRRTTLRCPADVTHFLNQR-YEGH 319 (446)
T ss_dssp HHHHHHHHHH-TTCSEEEEEECTTSCCCCCCSTT---CCCCHH-HHSCC--CSEEEEECEESSCCHHHHHHHHTT-SSSC
T ss_pred HHHHHHHHHh-CCCCEEEEecCcccccCcccCCC---ccchhh-hhhcc--cCcEEEeeeEeCCCHHHHHHHHhh-cCCc
Confidence 6553 2223 34699999999999999976532 111111 22221 123467899999999999999876 7765
Q ss_pred ccccCccccccCCCCCCCCCCCCCCeEEEEeCCceeecccCCCCCCHHHHHHHHHHHHHHHHCCCCCCeEEEEccchHHH
Q 004121 643 LQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQR 722 (772)
Q Consensus 643 L~~~~s~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iV~~Ll~~gv~~~~IgIITPY~aQv 722 (772)
+...... ...+.+....+..... . ...++ .--|||+..+.+
T Consensus 320 V~t~s~~---------------~~sv~~~~I~~~~~~~--------~---------------~~~~~-~g~iLtftq~~k 360 (446)
T 3vkw_A 320 VMCTSSE---------------KKSVSQEMVSGAASIN--------P---------------VSKPL-KGKILTFTQSDK 360 (446)
T ss_dssp CEECCCC---------------CCCEEEEECCCGGGCC--------T---------------TTSCC-CSEEEESSHHHH
T ss_pred eEECCCc---------------CceEEEeccccccccc--------c---------------ccCCC-CCeEEEcCHHHH
Confidence 5421100 1123332222211100 0 00122 236778887777
Q ss_pred HHHHHHHHHcCCcccccCCCeE-EccCCCCCCCcCCEEEEEeeecC
Q 004121 723 AYIVNYMSRNGALRQQLYKEIE-VASVDSFQGREKDYIILSCVRSN 767 (772)
Q Consensus 723 ~~I~~~L~~~~~~~~~~~~~I~-V~TVD~FQGrEkDvIIlS~VRSn 767 (772)
..|.+. ++. +.||+++||.|+|.|.+ ||.+
T Consensus 361 ~~L~~~-------------G~~~~~Tv~e~QG~tf~~Vtl--vr~~ 391 (446)
T 3vkw_A 361 EALLSR-------------GYADVHTVHEVQGETYADVSL--VRLT 391 (446)
T ss_dssp HHHHTT-------------TCCSCEETGGGTTCCEEEEEE--EECC
T ss_pred HHHHHh-------------CCCCccCHHHcCCcccCeEEE--EECC
Confidence 766531 234 89999999999999887 5553
No 12
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=99.63 E-value=1.5e-15 Score=191.01 Aligned_cols=175 Identities=17% Similarity=0.149 Sum_probs=107.2
Q ss_pred CCcEEEEEcCCCCChhhhh-hh-hhcC---CCeEEEecCCCCCCccccchHHHHhcchhhHHHHHHHCC-------CccE
Q 004121 551 RFRQVLIDESTQATEPECL-IP-LVLG---AKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLG-------LKPI 618 (772)
Q Consensus 551 ~Fd~VIIDEAsQatEpe~L-ip-L~~~---~k~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~~g-------~~~~ 618 (772)
+|++|+|||+|+++..+.- +- |... ..++++|||++| .|++. .|-...+|....... ...+
T Consensus 400 ~~~~IlVDEfQDt~~~Q~~il~~L~~~~~~~~~l~~vGD~~Q---sIY~F----RgAd~~~f~~~~~~~~~~~~~~~~~i 472 (1232)
T 3u4q_A 400 QFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQ---SIYRF----RLAEPLLFLSKYKRFTESGEGTGRKI 472 (1232)
T ss_dssp HCSEEEESSGGGCCHHHHHHHHHHSCSCTTSSCEEEEECGGG---CCCTT----TTCCTHHHHHHHHHSBSSCTTSCEEE
T ss_pred CCCEEEEEccccCCHHHHHHHHHHhcCCCCCCcEEEEeCchH---HhHhc----cCCCHHHHHHHHHHhhhhcCCCCcEe
Confidence 6999999999999998832 22 2222 468999999999 34432 233456665554321 2568
Q ss_pred ecccccCCchHHhHHHHhhhcCCcccc--cCcccc--ccCCCCCCCCCC-CCCCeEEEEeCCceeec-ccCC-C-CCCHH
Q 004121 619 RLQVQYRMHPSLSEFPSNSFYEGTLQN--GVTINE--RQSSGIDFPWPV-PNRPMFFYVQMGQEEIS-ASGT-S-YLNRT 690 (772)
Q Consensus 619 ~L~~QYRmhp~I~~f~S~~FY~g~L~~--~~s~~~--r~~~~~~~~~p~-~~~p~~f~~~~g~ee~~-~~g~-S-~~N~~ 690 (772)
.|..|||+++.|.++.|.+|....-.. ...... ....+. .++. ...++.++...+..... .... . .....
T Consensus 473 ~L~~NyRS~~~Il~~~n~lf~~~~~~~~~~i~y~~~~~l~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (1232)
T 3u4q_A 473 DLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAELKLGA--AYPDNDETETELLLIDNAEDTDASEEAEELETVQF 550 (1232)
T ss_dssp EECEESSSCHHHHHHHHHHHHTTSCHHHHSSCCCTTTSCEECC--CCCCCSSCSEEEEEEC-------------CHHHHH
T ss_pred ECCCCCCCChHHHHHHHHHHhhccccccccCCCchhhhcccCc--cCccCCCCCeEEEEecCCccccccccccccccHHH
Confidence 899999999999999999996542100 000000 000000 1221 12233333222111000 0000 0 11246
Q ss_pred HHHHHHHHHHHHHHCC-------------CCCCeEEEEccchHHHHHHHHHHHHcCC
Q 004121 691 EAANVEKIVTTFLRSG-------------VVPSQIGVITPYEGQRAYIVNYMSRNGA 734 (772)
Q Consensus 691 EA~~V~~iV~~Ll~~g-------------v~~~~IgIITPY~aQv~~I~~~L~~~~~ 734 (772)
||..|++.|..|++.| +.+.+|+||++.+.|...|.+.|...+.
T Consensus 551 Ea~~iA~~I~~l~~~~~~v~d~~~~~~r~~~~~DIAIL~R~~~~~~~i~~~L~~~gI 607 (1232)
T 3u4q_A 551 EAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRAQGI 607 (1232)
T ss_dssp HHHHHHHHHHHHHTSCCCBC---CCCCBCCCSTTEEEEESSSSSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhcCCceecccccccCCCCcCCEEEEEECchhHHHHHHHHhHCCC
Confidence 8999999999998764 6789999999999999999999988663
No 13
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=99.43 E-value=5.1e-13 Score=167.51 Aligned_cols=173 Identities=15% Similarity=0.173 Sum_probs=104.1
Q ss_pred CCcEEEEEcCCCCChhhh--hhhhhc--CCCeEEEecCCCCCCccccchHHHHhcchhhHHHHHHHCCCccEecccccCC
Q 004121 551 RFRQVLIDESTQATEPEC--LIPLVL--GAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRM 626 (772)
Q Consensus 551 ~Fd~VIIDEAsQatEpe~--LipL~~--~~k~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~QYRm 626 (772)
+|++|+|||+|+++..+. +-.|.. ....+++|||++| .|++...+ +...|.++.......+.|.+|||+
T Consensus 377 r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQ---SIY~FRGA----d~~~~~~~~~~~~~~~~L~~NyRS 449 (1180)
T 1w36_B 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQ---AIYAFRGA----DIFTYMKARSEVHAHYTLDTNWRS 449 (1180)
T ss_dssp HCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGG---CCCGGGTC----CHHHHHHHHHHCCCEEECCEETTS
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEECCcc---ccccCcCC----CHHHHHHHHHhcCCceeCCCCcCC
Confidence 599999999999999883 333332 2458999999999 44433221 222233333323457899999999
Q ss_pred chHHhHHHHhhhcCCccc---ccCccccc--cCCCCCCCCCCC---CCCeEEEEeCCceeecccCCCCCCHHHHHHHHHH
Q 004121 627 HPSLSEFPSNSFYEGTLQ---NGVTINER--QSSGIDFPWPVP---NRPMFFYVQMGQEEISASGTSYLNRTEAANVEKI 698 (772)
Q Consensus 627 hp~I~~f~S~~FY~g~L~---~~~s~~~r--~~~~~~~~~p~~---~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~i 698 (772)
++.|.++.|.+|-...-. ........ ...+....|+.. ..++.++...+.. .+..-....||+.|++.
T Consensus 450 ~~~Il~~~N~lf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~ea~~iA~~ 525 (1180)
T 1w36_B 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES----CGVGDYQSTMAQVCAAQ 525 (1180)
T ss_dssp CHHHHHHHHHHHHSSSSTTSSTTSCCCCCEECGGGTTEEEEETTEEECSEEEEECCSSC----CCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccccccCCCCcccccccccccccccccCCCCCCCeeEeecCCCc----cCcchHHHHHHHHHHHH
Confidence 999999999988653210 00000000 000000001100 1123333221100 00011124589999999
Q ss_pred HHHHHH---------------CCCCCCeEEEEccchHHHHHHHHHHHHcCC
Q 004121 699 VTTFLR---------------SGVVPSQIGVITPYEGQRAYIVNYMSRNGA 734 (772)
Q Consensus 699 V~~Ll~---------------~gv~~~~IgIITPY~aQv~~I~~~L~~~~~ 734 (772)
|.+|++ .|+.+.+|+||++.+.|...|.+.|...+.
T Consensus 526 I~~l~~~~~~~~~~~~~~~~~~~~~~~DIAIL~R~~~~~~~i~~~L~~~gI 576 (1180)
T 1w36_B 526 IRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 (1180)
T ss_dssp HHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhcccccceecCCcccCCCCcccEEEEeecchHHHHHHHHHHHCCC
Confidence 988886 367889999999999999999999987653
No 14
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=99.38 E-value=6.2e-12 Score=157.68 Aligned_cols=148 Identities=11% Similarity=0.138 Sum_probs=97.1
Q ss_pred CcEEEEEcCCCCChhhh--hhhhhcCCCeEE--EecC--------CCCCCccccchHHHHhcchhhHHHHHHH-CCC---
Q 004121 552 FRQVLIDESTQATEPEC--LIPLVLGAKQVV--LVGD--------HCQLGPVIMCKKAARAGLAQSLFERLVL-LGL--- 615 (772)
Q Consensus 552 Fd~VIIDEAsQatEpe~--LipL~~~~k~lI--LVGD--------~~QLpPvv~s~~a~~~gl~~SLFeRL~~-~g~--- 615 (772)
.++|+|||+++++..+. +-.|...++++. +||| +.| .|++... -....|.++.. .++
T Consensus 202 ~~~IlVDEfQD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~~~Q---sIY~~rg----a~~~~l~~~~~~~~~~~~ 274 (1166)
T 3u4q_B 202 GAHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHEL---ELFRMTG----KTYYRLHQKAKELNLDIT 274 (1166)
T ss_dssp TCEEEECSCSCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCCCTT---CTTHHHH----HHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCCCCC---CcchhHH----HHHHHHHHHHHHcCCCcc
Confidence 38999999999999883 223333345554 6699 555 3333222 12223333332 333
Q ss_pred ccEecccccCCchHHhHHHHhhhcCCcccccCccccccCCCCCCCCCCCCCCeEEEEeCCceeecccCCCCCCHHHHHHH
Q 004121 616 KPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANV 695 (772)
Q Consensus 616 ~~~~L~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V 695 (772)
..+.|..|||+.+.|..+.++.+.... ..+|+..+.++.++.... -..|++.|
T Consensus 275 ~~~~L~~nyRs~~~il~~i~~~~~~~~---------------~~~~~~~~~~i~i~~~~~------------~~~Ea~~i 327 (1166)
T 3u4q_B 275 YKELSGTERHTKTPELAHLEAQYEARP---------------AIPYAEKQEALTVMQAAN------------RRAELEGI 327 (1166)
T ss_dssp EEEECSCSTTTTCHHHHHHHHSSSCSS---------------CCCCCSCCSSEEEEEESS------------HHHHHHHH
T ss_pred cceecCCCCCCCCHHHHHHHHhHhhcC---------------CCccCCCCCCeEEEEcCC------------hHHHHHHH
Confidence 367899999999999998876543210 012222233444443322 13589999
Q ss_pred HHHHHHHHH-CCCCCCeEEEEccch-HHHHHHHHHHHHcC
Q 004121 696 EKIVTTFLR-SGVVPSQIGVITPYE-GQRAYIVNYMSRNG 733 (772)
Q Consensus 696 ~~iV~~Ll~-~gv~~~~IgIITPY~-aQv~~I~~~L~~~~ 733 (772)
++.|..+++ .|+++.+|+||++.+ .|...|...|.+.+
T Consensus 328 a~~I~~l~~~~g~~~~diAVL~R~~~~~~~~i~~~L~~~g 367 (1166)
T 3u4q_B 328 AREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFADYE 367 (1166)
T ss_dssp HHHHHHHHHTSCCCGGGEEEEESCGGGTHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCChhheEEEeCChHHHHHHHHHHHHHcC
Confidence 999999988 799999999999998 58999999998765
No 15
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.76 E-value=3.7e-08 Score=103.70 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcC
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATG 458 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~ 458 (772)
.|++.|.+|+..++..+-.+|.+|+|+|||.++..++..++..+..++|+++|++..+++..+++.+.+
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhc
Confidence 689999999999988777899999999999999888877776666699999999999999999997753
No 16
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.75 E-value=6.8e-08 Score=99.59 Aligned_cols=73 Identities=23% Similarity=0.269 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCce-EEEec
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLK-VVRLC 465 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~~-vvRl~ 465 (772)
..|++.|.+|+...+..+-.+|.||+|+|||.++..++..+ ..++|+++|+...++++.+++.+.+++ +..+.
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~ 165 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIFGEEYVGEFS 165 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEES
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 47999999999998887779999999999999877666543 459999999999999999999876665 54444
No 17
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.73 E-value=5.4e-08 Score=96.78 Aligned_cols=70 Identities=24% Similarity=0.205 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHH-----cCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAK-----QGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~-----~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..+++.|++|+..++...-.+|.+|+|||||.+....+...+. ....++|+++|+...++++.+++.+.
T Consensus 21 ~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 21 LTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 34689999999999998888999999999999986555544432 23458999999999999999999875
No 18
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.71 E-value=2.1e-08 Score=100.15 Aligned_cols=68 Identities=22% Similarity=0.287 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc-----CCCcEEEEcCcHHHHHH-HHHHHHh
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ-----GQGQVLVCAPSNVAVDQ-LAEKISA 456 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~-----~~~rILV~ApSN~AVD~-L~erL~~ 456 (772)
..|++.|.+|+..++...-.+|.+|+|||||.+....+..++.. ...++|+++|+...+++ +.+.+.+
T Consensus 32 ~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred CCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 46899999999999988889999999999999988877766543 24689999999999888 5555544
No 19
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=98.66 E-value=6.8e-08 Score=95.02 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=80.3
Q ss_pred ccccCCchHHhHHHHhhhcCCcccccCccccccCCCCCCCCCCCCCCeEEEEeCCceeecccCCCCCCHHHHHHHHHHHH
Q 004121 621 QVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVT 700 (772)
Q Consensus 621 ~~QYRmhp~I~~f~S~~FY~g~L~~~~s~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iV~ 700 (772)
++|||++++|++|++.++.++.-. . . .......|.++ .... ...|+..|.+.|.
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~~~---~-------~---~~~~G~~p~~~-~~~~------------~~~e~~~i~~~I~ 55 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGEAV---T-------A---FDRQGDLPNVV-VTPN------------FEAGVDQVVDQLA 55 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC---------------------CCCCCCEEE-EESS------------HHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcc---c-------C---CCCCCCCCEEE-EeCC------------HHHHHHHHHHHHH
Confidence 579999999999999888654210 0 0 00112234333 2211 1358888888888
Q ss_pred HHHHCCCCCCeEEEEccchHHHHHHHHHHHHcCCcc-------cccCCCeEEccCCCCCCCcCCEEEEEeeec
Q 004121 701 TFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALR-------QQLYKEIEVASVDSFQGREKDYIILSCVRS 766 (772)
Q Consensus 701 ~Ll~~gv~~~~IgIITPY~aQv~~I~~~L~~~~~~~-------~~~~~~I~V~TVD~FQGrEkDvIIlS~VRS 766 (772)
. .+.| +.+||||++.+.|...|.+.|...+... ......|.|.|++.+||.|+|.||+..+-.
T Consensus 56 ~-~~~g--~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~ 125 (174)
T 3dmn_A 56 M-NDSE--RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQ 125 (174)
T ss_dssp H-HHHT--TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBT
T ss_pred H-hccC--CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCc
Confidence 7 5555 6899999999999999999998754211 112357999999999999999999976543
No 20
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.65 E-value=4.4e-08 Score=97.51 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..+++.|.+|+..++...-.+|.+|+|||||.+....+...+.. ...++|+++|+...+.++.+++.+.
T Consensus 23 ~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 23 WEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHH
Confidence 457899999999999988889999999999998765444443322 3348999999999999999988764
No 21
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.63 E-value=2.1e-07 Score=93.69 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=57.6
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..+++.|.+|+..++...-.+|.+|.|||||.+....+...+.. +..++|+++||...++++.+.+.+.
T Consensus 34 ~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 34 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 346899999999999987789999999999998876665555433 2348999999999999999888764
No 22
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.62 E-value=1.3e-07 Score=95.40 Aligned_cols=69 Identities=26% Similarity=0.230 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHH-HHHHHc-CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIV-YHMAKQ-GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI-~~L~~~-~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
..+++.|.+|+..++...-.+|.+|+|||||.+....+ ..+... ...++|+++|+...++++.+.+.+.
T Consensus 35 ~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 46889999999999988889999999999998854333 333222 3458999999999999999988764
No 23
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.62 E-value=1.9e-07 Score=94.72 Aligned_cols=69 Identities=19% Similarity=0.122 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHH--------cCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAK--------QGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~--------~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
..+++.|.+|+..++...-.+|.+|.|||||.+....+...+. ....++|+++||...+.++.+++.+.
T Consensus 41 ~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 4688999999999998888899999999999876544333322 14458999999999999999998775
No 24
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.60 E-value=2.1e-07 Score=94.96 Aligned_cols=71 Identities=21% Similarity=0.173 Sum_probs=58.0
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHH-HHH-----cCCCcEEEEcCcHHHHHHHHHHHHhcC
Q 004121 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYH-MAK-----QGQGQVLVCAPSNVAVDQLAEKISATG 458 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~-L~~-----~~~~rILV~ApSN~AVD~L~erL~~~~ 458 (772)
+..+++.|.+|+..++...-.+|.+|.|||||.+....+.+ +.+ ..+.++|+++||...+.++.+++.+.+
T Consensus 45 ~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 45 YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 45789999999999998888999999999999986654444 333 234589999999999999999987653
No 25
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.59 E-value=2.8e-07 Score=95.41 Aligned_cols=70 Identities=21% Similarity=0.152 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHH-HHHHcC-CCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVY-HMAKQG-QGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~-~L~~~~-~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..+++.|.+|+..++...-.++.+|.|||||.+....+. .+...+ ..++||++||...++++.+++.+.
T Consensus 63 ~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 63 WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 3468999999999999888899999999999988654444 444443 347999999999999999888654
No 26
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.57 E-value=6.5e-07 Score=92.35 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=57.8
Q ss_pred CCCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc-----------CCCcEEEEcCcHHHHHHHHHHHH
Q 004121 387 GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ-----------GQGQVLVCAPSNVAVDQLAEKIS 455 (772)
Q Consensus 387 ~~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~-----------~~~rILV~ApSN~AVD~L~erL~ 455 (772)
++..+++.|.+|+..++...-.+|.+|.|||||.+....+...+.. ...++|+++||...+.++.+++.
T Consensus 42 g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 121 (253)
T 1wrb_A 42 SYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQ 121 (253)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHH
Confidence 4567899999999999988889999999999998866555444332 12489999999999999999887
Q ss_pred hc
Q 004121 456 AT 457 (772)
Q Consensus 456 ~~ 457 (772)
+.
T Consensus 122 ~~ 123 (253)
T 1wrb_A 122 KF 123 (253)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 27
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.54 E-value=1.8e-07 Score=95.82 Aligned_cols=69 Identities=28% Similarity=0.246 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
..+++.|.+|+..++...-.+|.+|+|||||.+....+.+.+.. ...++|+++||...+.++.+++.+.
T Consensus 51 ~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHH
Confidence 45889999999999988789999999999998865544443322 3458999999999999999998765
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.53 E-value=3.9e-07 Score=97.85 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHhhcC-CeEEEEccCCCchhhHHHHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 389 PELNASQVFAVKSVLQR-PISLIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~-~l~LIqGPPGTGKT~tla~iI~~L~~~-~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
..|++.|++|+..++.. ...+|.+|+|||||.+....+..++.. +..++|+++|+...++++.+++.+.
T Consensus 27 ~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 97 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESL 97 (367)
T ss_dssp CSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 46899999999999977 688999999999999877666665543 4568999999999999999998764
No 29
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.53 E-value=4.8e-07 Score=92.90 Aligned_cols=70 Identities=21% Similarity=0.165 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHH-HHHHHc------CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIV-YHMAKQ------GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI-~~L~~~------~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..+++.|.+|+..++...-.++.+|.|||||.+....+ ..+... ...++|+++||...+.++.+.+.+.
T Consensus 49 ~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 49 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 456899999999999988889999999999998855444 344321 2457999999999999998877653
No 30
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.53 E-value=4e-07 Score=95.03 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHH-HHH-----cCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYH-MAK-----QGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~-L~~-----~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..+++-|.+|+..++...-.+|+||.|||||.+....+.+ +.+ ....++|+++||...+.++.+++.+.
T Consensus 74 ~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 74 FTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp CCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 34689999999999998777899999999999986544443 443 13458999999999999999998765
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.52 E-value=3.7e-07 Score=101.09 Aligned_cols=67 Identities=27% Similarity=0.219 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
.|.+.|++++..++.. -.+|.+|.|+|||.++...+..++.....++||++|+...+++..+.+.+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 5789999999999887 889999999999999988887776655679999999999999999999765
No 32
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.52 E-value=3.4e-07 Score=104.17 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
.|++.|.+||..++...-.+|.||.|+|||.+...++..++..+..+|||++|+...+++..+++.+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 68999999999999877889999999999999988887777666669999999999999999999765
No 33
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.49 E-value=5e-07 Score=91.99 Aligned_cols=70 Identities=23% Similarity=0.204 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHH-HHHHHc-CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIV-YHMAKQ-GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI-~~L~~~-~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..+++.|.+|+..++...-.+|.+|.|||||.+....+ ..+... ...++|+++||...++++.+++.+.
T Consensus 44 ~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 44 FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 346899999999999887789999999999998854433 333322 3458999999999999999998765
No 34
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.48 E-value=3.2e-07 Score=92.50 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
..+++.|.+|+..++...-.+|.+|.|||||.+....+...+.. ...++|+++||...++++.+++.+.
T Consensus 25 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 46889999999999988889999999999998865544444332 3458999999999999999988654
No 35
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.47 E-value=8.5e-07 Score=94.18 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=55.6
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..|++.|++|+..++...-.+|.+|+|+|||.+....+.. . ..++|+++|+...++++.+++.+.
T Consensus 14 ~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~---~-~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 14 FKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE---L-GMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH---H-TCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHh---h-cCCEEEEeCCHHHHHHHHHHHHHH
Confidence 34689999999999998888999999999999876544433 2 459999999999999999999764
No 36
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.45 E-value=3.9e-07 Score=93.47 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~---~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..+++.|.+|+..++...-.++++|.|||||.+....+...+.. ...++|+++||...++++.+++.+.
T Consensus 49 ~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 49 FQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 346899999999999987779999999999999865444444432 3347999999999999999998765
No 37
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.44 E-value=8.1e-07 Score=97.20 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=57.6
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..|++.|++|+..++...-.+|.+|.|||||.+....+...+.. ...++|+++|+...++++.+++.+.
T Consensus 41 ~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (400)
T 1s2m_A 41 FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTL 112 (400)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHH
Confidence 346899999999999987789999999999998766555554432 3458999999999999999988764
No 38
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.43 E-value=5.9e-07 Score=101.15 Aligned_cols=73 Identities=23% Similarity=0.269 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCce-EEEec
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLK-VVRLC 465 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~~-vvRl~ 465 (772)
..|++.|.+|+..++..+-.+|.||.|+|||.+....+..+ ..++||++|+...+.+..+++.+.+++ +..+.
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~ 165 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIFGEEYVGEFS 165 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBS
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHhCCCcceEEEC
Confidence 47999999999999887779999999999999987766654 459999999999999999999886665 54443
No 39
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.43 E-value=9.8e-07 Score=95.98 Aligned_cols=69 Identities=19% Similarity=0.126 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
..|++.|++|+..++...-.+|.+|.|+|||.+....+...+.. +..++|+++|+...++++.+.+.+.
T Consensus 29 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 29 EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp CSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHH
Confidence 46899999999999988889999999999998766555544332 3458999999999999999888764
No 40
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.41 E-value=6.8e-07 Score=97.20 Aligned_cols=69 Identities=26% Similarity=0.220 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
..|++.|++|+..++...-.+|.+|.|+|||.+....+...+.. ...++|+++|+...++++.+++.+.
T Consensus 42 ~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 112 (394)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 46899999999999988889999999999998865544443332 3458999999999999999988764
No 41
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.41 E-value=7.2e-07 Score=98.59 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc---CceEEEe
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT---GLKVVRL 464 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~---~~~vvRl 464 (772)
.+++.|.+|+..++...-.+|++|.|||||.+....+..+.. .+.++|+++||...+.++.+++.+. ++++..+
T Consensus 21 ~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~ 97 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGF 97 (414)
T ss_dssp CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEEC
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEE
Confidence 467999999999998888999999999999955544444443 3459999999999999999999874 4444443
No 42
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.38 E-value=5.8e-07 Score=104.44 Aligned_cols=70 Identities=29% Similarity=0.331 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHhhc-----CCeEEEEccCCCchhhHHHHHHHHHHHcC--------CCcEEEEcCcHHHHHHHH-HHH
Q 004121 389 PELNASQVFAVKSVLQ-----RPISLIQGPPGTGKTVTSAAIVYHMAKQG--------QGQVLVCAPSNVAVDQLA-EKI 454 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~-----~~l~LIqGPPGTGKT~tla~iI~~L~~~~--------~~rILV~ApSN~AVD~L~-erL 454 (772)
..|.+.|.+||..++. .+-.+|.+|.|||||.++..++..+++.+ ..+||+++|++.-+++.. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4689999999999875 45679999999999999988888887753 468999999999999888 554
Q ss_pred HhcC
Q 004121 455 SATG 458 (772)
Q Consensus 455 ~~~~ 458 (772)
...+
T Consensus 257 ~~~~ 260 (590)
T 3h1t_A 257 TPFG 260 (590)
T ss_dssp TTTC
T ss_pred Hhcc
Confidence 4433
No 43
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.38 E-value=1.4e-06 Score=94.43 Aligned_cols=70 Identities=21% Similarity=0.202 Sum_probs=57.9
Q ss_pred CCCCCHHHHHHHHHhhcC--CeEEEEccCCCchhhHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~--~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..+++.|.+|+..++.. .-.+|++|.|+|||.+....+...+.. ...++|+++|+...++++.+++.+.
T Consensus 25 ~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 25 FQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp CCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHH
Confidence 346899999999999876 789999999999999876655544332 3458999999999999999998764
No 44
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.37 E-value=1.5e-06 Score=95.39 Aligned_cols=69 Identities=26% Similarity=0.268 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHH--cCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAK--QGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~--~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
..+++.|++|+..++...-.+|++|.|||||.+....+.+.+. ....++|+++|+...+.++.+++.+.
T Consensus 58 ~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 128 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLAL 128 (410)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 4688999999999998778999999999999887665555443 24468999999999999999988764
No 45
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.36 E-value=1e-06 Score=100.16 Aligned_cols=76 Identities=24% Similarity=0.260 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc-C---CCcEEEEcCcHHHHHHHHHHHHhc----CceE
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ-G---QGQVLVCAPSNVAVDQLAEKISAT----GLKV 461 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~-~---~~rILV~ApSN~AVD~L~erL~~~----~~~v 461 (772)
.|.+.|.+|+..++...-.+|.+|.|+|||.+....+.+.+.. + ..++||++||...+.+..+.+.+. ++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5789999999999988889999999999999987777666554 2 568999999999999999888764 5555
Q ss_pred EEec
Q 004121 462 VRLC 465 (772)
Q Consensus 462 vRl~ 465 (772)
..+.
T Consensus 84 ~~~~ 87 (555)
T 3tbk_A 84 ASIS 87 (555)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5543
No 46
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.35 E-value=1.7e-06 Score=98.59 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc-C---CCcEEEEcCcHHHHHHHHHHHHhc----Cce
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ-G---QGQVLVCAPSNVAVDQLAEKISAT----GLK 460 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~-~---~~rILV~ApSN~AVD~L~erL~~~----~~~ 460 (772)
..|.+.|.+|+..++...-.+|.+|.|+|||.+....+.+.+.. + ..++||++|+...+.+..+.+.+. +++
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 85 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 85 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 36889999999999987789999999999999887777666654 2 568999999999999999888764 455
Q ss_pred EEEe
Q 004121 461 VVRL 464 (772)
Q Consensus 461 vvRl 464 (772)
+..+
T Consensus 86 ~~~~ 89 (556)
T 4a2p_A 86 VQGI 89 (556)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5444
No 47
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.35 E-value=1.2e-06 Score=96.14 Aligned_cols=69 Identities=26% Similarity=0.239 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
..+++.|.+|+..++...-.+|.+|.|+|||.+....+.+.+.. ...++|+++|+...+.++.+++.+.
T Consensus 61 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 46889999999999987779999999999999866555554432 3458999999999999999998765
No 48
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.32 E-value=2.7e-06 Score=93.38 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHH-HHHHHHHcCC-------------------CcEEEEcCcHHHHH
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAA-IVYHMAKQGQ-------------------GQVLVCAPSNVAVD 448 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~-iI~~L~~~~~-------------------~rILV~ApSN~AVD 448 (772)
..+++.|.+|+..++...-.+|.+|.|||||.+... ++..+...+. .++|+++||...+.
T Consensus 36 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 115 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAV 115 (417)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHH
Confidence 468899999999998888899999999999986543 4444443321 37999999999999
Q ss_pred HHHHHHHhc
Q 004121 449 QLAEKISAT 457 (772)
Q Consensus 449 ~L~erL~~~ 457 (772)
++.+++.+.
T Consensus 116 q~~~~~~~~ 124 (417)
T 2i4i_A 116 QIYEEARKF 124 (417)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 49
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.25 E-value=3.4e-06 Score=92.20 Aligned_cols=70 Identities=20% Similarity=0.142 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHhhcC--CeEEEEccCCCchhhHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~--~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..+++.|.+|+..++.. ...+|.+|.|||||.+....+...+.. ...++|+++|+...+.++.+++.+.
T Consensus 45 ~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 118 (412)
T 3fht_A 45 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 118 (412)
T ss_dssp CCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHH
Confidence 456899999999999975 789999999999998865444443332 3348999999999999998888764
No 50
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.23 E-value=4.6e-06 Score=98.46 Aligned_cols=77 Identities=23% Similarity=0.217 Sum_probs=61.8
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCC----CcEEEEcCcHHHHHHHHHHHHhc----Cc
Q 004121 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQ----GQVLVCAPSNVAVDQLAEKISAT----GL 459 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~----~rILV~ApSN~AVD~L~erL~~~----~~ 459 (772)
...|.+-|.+++..++...-.+|.+|.|+|||.+....+.+.+.... .++||++||...+.+..+.+.+. ++
T Consensus 11 ~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 90 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGY 90 (696)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCc
Confidence 45789999999999998888999999999999988777766554432 68999999999999999888765 45
Q ss_pred eEEEe
Q 004121 460 KVVRL 464 (772)
Q Consensus 460 ~vvRl 464 (772)
++..+
T Consensus 91 ~v~~~ 95 (696)
T 2ykg_A 91 RVTGI 95 (696)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 55444
No 51
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.22 E-value=3e-06 Score=102.09 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=63.3
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcC----CCcEEEEcCcHHHHHHHHHHHHhc----Cc
Q 004121 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG----QGQVLVCAPSNVAVDQLAEKISAT----GL 459 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~----~~rILV~ApSN~AVD~L~erL~~~----~~ 459 (772)
...|.+.|.+|+..++...-.+|.+|.|+|||.+....+.+++... ..++||++|+...+.+..+.+.+. ++
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCc
Confidence 3478999999999999888899999999999999877777666552 568999999999999998888764 55
Q ss_pred eEEEec
Q 004121 460 KVVRLC 465 (772)
Q Consensus 460 ~vvRl~ 465 (772)
++..+.
T Consensus 326 ~v~~~~ 331 (797)
T 4a2q_A 326 SVQGIS 331 (797)
T ss_dssp CEEEEC
T ss_pred eEEEEe
Confidence 555543
No 52
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.21 E-value=2.6e-06 Score=101.26 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHH-hhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Q 004121 388 LPELNASQVFAVKS-VLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~-aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~ 455 (772)
+..|++.|.+|+.. .+.+...+|.||.|+|||+++...+...+...+.+|++++|+...+.+..+++.
T Consensus 28 ~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~ 96 (715)
T 2va8_A 28 IKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFK 96 (715)
T ss_dssp CCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHH
Confidence 45799999999998 456788999999999999998665554444334699999999999999999984
No 53
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.18 E-value=1.2e-06 Score=103.64 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcC-C----CcEEEEcCcHHHHHHH-HHHHHhcC---ce
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG-Q----GQVLVCAPSNVAVDQL-AEKISATG---LK 460 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~-~----~rILV~ApSN~AVD~L-~erL~~~~---~~ 460 (772)
.|.+.|.+|+..++...-.+|.+|.|+|||.+....+..++..+ . .++||++|+...+.+. .+.+.+.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 68899999999999877899999999999999887777665442 2 6899999999999999 88887653 44
Q ss_pred EEEe
Q 004121 461 VVRL 464 (772)
Q Consensus 461 vvRl 464 (772)
+..+
T Consensus 87 v~~~ 90 (699)
T 4gl2_A 87 VIGL 90 (699)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
No 54
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.15 E-value=8.6e-06 Score=97.70 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHhhcC------CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 390 ELNASQVFAVKSVLQR------PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~------~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
.|++.|++|+..++.. ...+|+||.|||||.+....+...+..+ .++++++||...+.+..+++.+.
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-~qvlvlaPtr~La~Q~~~~l~~~ 440 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-FQTAFMVPTSILAIQHYRRTVES 440 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-SCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHH
Confidence 6999999999988752 3679999999999999887777666655 59999999999999999988764
No 55
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=98.13 E-value=7e-06 Score=96.06 Aligned_cols=157 Identities=19% Similarity=0.274 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHhhc--CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCceEEEeccc
Q 004121 390 ELNASQVFAVKSVLQ--RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAK 467 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~--~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~~vvRl~~~ 467 (772)
.++..|.+|+...+. .+..+|.|+.|+|||+++-.++.++. .+++|||||..|+..|.+...+. +++
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~a~~~l~~~~~~~----i~~--- 243 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTDVLAQFAGEK----FRF--- 243 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCCSCHHHHHHHGGG----CCB---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCHHHHHHHHHHhhCC----eEE---
Confidence 689999999998876 67889999999999988777777653 36899999999999877654321 000
Q ss_pred cccccCCchhhhhHHHHHhhccchhHHHHHHHHHhHhhhccCCchHHHHHHHHHHHHHHHHhhcccceeecccccCCccc
Q 004121 468 SREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRL 547 (772)
Q Consensus 468 sre~i~~~~~~~~l~~~v~~~~~~~~~~l~kl~~l~~~~~~ls~~d~k~~~~l~~~~~~~il~~a~VI~~T~~~a~~~~L 547 (772)
+. .+. ++.
T Consensus 244 --------------------~~----------------------Pd~-------------~~~----------------- 251 (671)
T 2zpa_A 244 --------------------IA----------------------PDA-------------LLA----------------- 251 (671)
T ss_dssp --------------------CC----------------------HHH-------------HHH-----------------
T ss_pred --------------------eC----------------------chh-------------hhh-----------------
Confidence 00 000 000
Q ss_pred ccCCCcEEEEEcCCCCChhhhhhhhhcCCCeEEEecCCCCCCccccchHHHHhcchhhHHHHHHHCCCccEecccccCC-
Q 004121 548 ANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRM- 626 (772)
Q Consensus 548 ~~~~Fd~VIIDEAsQatEpe~LipL~~~~k~lILVGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~QYRm- 626 (772)
.....|+||||||+.+..|- +-.+...-.+++|+..-.+...+= .|+...+...| .....+.|+.-.|=
T Consensus 252 ~~~~~dlliVDEAAaIp~pl-l~~ll~~~~~v~~~tTv~GYEGtG-------rgf~lk~~~~L--~~~~~~~L~~piR~a 321 (671)
T 2zpa_A 252 SDEQADWLVVDEAAAIPAPL-LHQLVSRFPRTLLTTTVQGYEGTG-------RGFLLKFCARF--PHLHRFELQQPIRWA 321 (671)
T ss_dssp SCCCCSEEEEETGGGSCHHH-HHHHHTTSSEEEEEEEBSSTTBBC-------HHHHHHHHHTS--TTCEEEECCSCSSSC
T ss_pred CcccCCEEEEEchhcCCHHH-HHHHHhhCCeEEEEecCCcCCCcC-------cccccccHhhc--CCCcEEEccCceecC
Confidence 01148999999999998886 333333457899999988855432 23333333333 34567889998886
Q ss_pred -chHHhHHHHhhhc
Q 004121 627 -HPSLSEFPSNSFY 639 (772)
Q Consensus 627 -hp~I~~f~S~~FY 639 (772)
+-.|-.|.++.+-
T Consensus 322 ~~DplE~wl~~~ll 335 (671)
T 2zpa_A 322 QGCPLEKMVSEALV 335 (671)
T ss_dssp TTCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhhC
Confidence 5589999888763
No 56
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.13 E-value=8e-06 Score=87.02 Aligned_cols=70 Identities=21% Similarity=0.177 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHHHHhhcC--CeEEEEccCCCchhhHHH-HHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSA-AIVYHMAKQ-GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~--~l~LIqGPPGTGKT~tla-~iI~~L~~~-~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..+++-|.+|+..++.. .-.++++|.|||||.+.. .++..+... ...++|+++||...+.++.+.+...
T Consensus 112 ~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l 185 (300)
T 3fmo_B 112 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 185 (300)
T ss_dssp CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 346889999999999875 688999999999998754 333333322 2237999999999999998887664
No 57
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.12 E-value=1.3e-05 Score=89.65 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHH-HHHHHHHcC------CCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAA-IVYHMAKQG------QGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~-iI~~L~~~~------~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
..+++-|++|+..++...-.++++|.|||||.+... ++..+...+ ..++||++||...+.++.+.+.+.
T Consensus 77 ~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 77 KIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 467899999999999888899999999999987543 444555432 348999999999999999988765
No 58
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.10 E-value=5.4e-06 Score=101.67 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcC----CCcEEEEcCcHHHHHHHHHHHHhc----Cce
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG----QGQVLVCAPSNVAVDQLAEKISAT----GLK 460 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~----~~rILV~ApSN~AVD~L~erL~~~----~~~ 460 (772)
..|.+.|.+|+..++...-.+|.+|.|+|||.+....+.+++... ..++||++|+...+.+..+.+.+. +++
T Consensus 247 ~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (936)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 468899999999999888899999999999998777776655442 568999999999999998888764 556
Q ss_pred EEEecc
Q 004121 461 VVRLCA 466 (772)
Q Consensus 461 vvRl~~ 466 (772)
+..+.+
T Consensus 327 v~~~~G 332 (936)
T 4a2w_A 327 VQGISG 332 (936)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 555543
No 59
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.08 E-value=3.4e-06 Score=100.14 Aligned_cols=67 Identities=24% Similarity=0.270 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Q 004121 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~ 455 (772)
+..|++.|.+++...+.+...+|.||.|+|||+++...+...+.. +.++++++|+...+.+..+++.
T Consensus 23 ~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~l~i~P~r~La~q~~~~~~ 89 (702)
T 2p6r_A 23 IEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-GGKSLYVVPLRALAGEKYESFK 89 (702)
T ss_dssp --CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-CCcEEEEeCcHHHHHHHHHHHH
Confidence 346889999999998888899999999999999886555554444 4599999999999999999984
No 60
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.07 E-value=4e-06 Score=99.87 Aligned_cols=68 Identities=22% Similarity=0.354 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHH-hhcCCeEEEEccCCCchhhHHHHHH-HHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 004121 388 LPELNASQVFAVKS-VLQRPISLIQGPPGTGKTVTSAAIV-YHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~-aL~~~l~LIqGPPGTGKT~tla~iI-~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (772)
+..|++.|.+|+.. .+.+...+|.||.|+|||++....+ ..+...+ .++++++|+..++.++.+++..
T Consensus 21 ~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~-~~~l~i~P~raLa~q~~~~~~~ 90 (720)
T 2zj8_A 21 IESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG-GKAVYIVPLKALAEEKFQEFQD 90 (720)
T ss_dssp CCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC-SEEEEECSSGGGHHHHHHHTGG
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC-CEEEEEcCcHHHHHHHHHHHHH
Confidence 34789999999998 5678899999999999999875444 4444344 5999999999999999999853
No 61
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.4e-05 Score=99.53 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCc
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGL 459 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~ 459 (772)
..|++.|.+||..++.+.-.+|.||.|+|||.+....+...+..+ .++|+++|+...+.+..+++.+...
T Consensus 183 f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g-~rvlvl~PtraLa~Q~~~~l~~~~~ 252 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-QRVIYTSPIKALSNQKYRELLAEFG 252 (1108)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC-CeEEEEcCcHHHHHHHHHHHHHHhC
Confidence 368999999999998888899999999999998877777666655 5999999999999999999987543
No 62
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.04 E-value=1.5e-05 Score=91.77 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=55.3
Q ss_pred CCCCCHHHHHHHHHhh--cCCeEEEEccCCCchhhHHHHHHHH-HHHcC-----CCcEEEEcCcHHHHHHHHHHHHh
Q 004121 388 LPELNASQVFAVKSVL--QRPISLIQGPPGTGKTVTSAAIVYH-MAKQG-----QGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL--~~~l~LIqGPPGTGKT~tla~iI~~-L~~~~-----~~rILV~ApSN~AVD~L~erL~~ 456 (772)
+..|++-|.+|+..++ ...-++|.+|.|||||.+....+.+ +.+.. ..++||++||...+.++.+++.+
T Consensus 92 ~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 92 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp CSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 4568999999999998 4568899999999999886554444 43332 23899999999999999998876
No 63
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.04 E-value=1e-05 Score=91.23 Aligned_cols=70 Identities=20% Similarity=0.142 Sum_probs=54.7
Q ss_pred CCCCCHHHHHHHHHhhcC--CeEEEEccCCCchhhHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~--~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..+++-|.+|+..++.. ..++++||.|||||.+....+...+.. ...++||++|+...+.++.+++.+.
T Consensus 112 ~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 185 (479)
T 3fmp_B 112 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 185 (479)
T ss_dssp CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHH
Confidence 346889999999999875 789999999999998855444333322 2238999999999999998877653
No 64
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.01 E-value=2.9e-06 Score=96.94 Aligned_cols=70 Identities=21% Similarity=0.200 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHHhhcC--CeEEEEccCCCchhhHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~--~l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..+++.|.+|+..++.. .-.+|.+|.|||||.+....+...+.. ...++|+++|++..++++.+++.+.
T Consensus 139 ~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 139 XXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHh
Confidence 346888999999999976 789999999999999866555554433 2448999999999999999999775
No 65
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.01 E-value=1.9e-05 Score=91.48 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=55.6
Q ss_pred CCCCCHHHHHHHHHhh--cCCeEEEEccCCCchhhHHHHHHHHH-HHcC-----CCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 388 LPELNASQVFAVKSVL--QRPISLIQGPPGTGKTVTSAAIVYHM-AKQG-----QGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL--~~~l~LIqGPPGTGKT~tla~iI~~L-~~~~-----~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..|++-|.+|+..++ ...-.+|++|.|||||.+....+.+. .... ..++||++||...+.++.+.+.+.
T Consensus 41 ~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~ 118 (579)
T 3sqw_A 41 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKI 118 (579)
T ss_dssp CSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHH
Confidence 3468999999999998 45678999999999998765544443 3332 248999999999999999988763
No 66
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.00 E-value=1.5e-05 Score=99.22 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
.+++-|.+|+..++...-.+|++|.|||||.+....+..++.. +.++||++||...+.++.+++.+.
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-GKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-TCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-CCeEEEEechHHHHHHHHHHHHHh
Confidence 4789999999999988889999999999999665555555544 459999999999999999999884
No 67
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.92 E-value=1.6e-05 Score=98.08 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
.|++.|.+|+..++...-.+|.+|.|+|||.+....+...+..+ .++|+++|+...+.+..+++.+.
T Consensus 86 ~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g-~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-QRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC-CeEEEECChHHHHHHHHHHHHHH
Confidence 59999999999998888899999999999998766666666554 59999999999999999998765
No 68
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.90 E-value=3.8e-05 Score=94.52 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=97.8
Q ss_pred CCCCHHHHHHHHHhhcC--CeEEEEccCCCchhhHHHHHHHHHHHcC-CCcEEEEcCcHHHHHHHHHHHHh-cCceEEEe
Q 004121 389 PELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAIVYHMAKQG-QGQVLVCAPSNVAVDQLAEKISA-TGLKVVRL 464 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~--~l~LIqGPPGTGKT~tla~iI~~L~~~~-~~rILV~ApSN~AVD~L~erL~~-~~~~vvRl 464 (772)
..|.+.|.+|+..++.+ +-.+|.++.|+|||.++..++..++..+ .+++||++|+ ..+.+....+.+ .++++..+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 46899999999998863 4689999999999999999888887664 3589999999 777888877743 34443322
Q ss_pred ccccccccCCchhhhhHHHHHhhccchhHHHHHHHHHhHhhhccCCchHHHHHHHHHHHHHHHHhhcccceeecccccCC
Q 004121 465 CAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGD 544 (772)
Q Consensus 465 ~~~sre~i~~~~~~~~l~~~v~~~~~~~~~~l~kl~~l~~~~~~ls~~d~k~~~~l~~~~~~~il~~a~VI~~T~~~a~~ 544 (772)
..... .. ..... ...+...+|+++|......
T Consensus 231 ~~~~~--------------------------~~---~~~~~--------------------~~~~~~~dIvI~T~~~L~~ 261 (968)
T 3dmq_A 231 DDERY--------------------------AE---AQHDA--------------------YNPFDTEQLVICSLDFARR 261 (968)
T ss_dssp CHHHH--------------------------HH---HHHTT--------------------CSSSTTCSEEEECHHHHHT
T ss_pred ccchh--------------------------hh---hhhhc--------------------ccccccCCEEEEcHHHHhh
Confidence 11000 00 00000 0113456888888655422
Q ss_pred -----cccccCCCcEEEEEcCCCCChhh--------hhhhhhcC-CCeEEEecCCCCC
Q 004121 545 -----PRLANFRFRQVLIDESTQATEPE--------CLIPLVLG-AKQVVLVGDHCQL 588 (772)
Q Consensus 545 -----~~L~~~~Fd~VIIDEAsQatEpe--------~LipL~~~-~k~lILVGD~~QL 588 (772)
..+....|++||||||..+.-.. .+..+... ...+.|-|=|.|.
T Consensus 262 ~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n 319 (968)
T 3dmq_A 262 SKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQL 319 (968)
T ss_dssp STTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSS
T ss_pred CHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccC
Confidence 12445689999999999885322 23333222 3467788888773
No 69
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.89 E-value=3.5e-05 Score=95.00 Aligned_cols=67 Identities=19% Similarity=0.175 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
.|++.|.+||..++...-.+|.||.|+|||.+....+..++..+ .++||++|+...+.++.+++.+.
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g-~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM-TKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHH
Confidence 58999999999999888999999999999998776666666554 58999999999999999999875
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=97.82 E-value=5.5e-05 Score=85.62 Aligned_cols=141 Identities=18% Similarity=0.231 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHhh----cCCeEEEEccCCCchhhHHHHHHHHHHHcC-CCcEEEEcCcHHHHHHHHHHHHhcC--ceE
Q 004121 389 PELNASQVFAVKSVL----QRPISLIQGPPGTGKTVTSAAIVYHMAKQG-QGQVLVCAPSNVAVDQLAEKISATG--LKV 461 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL----~~~l~LIqGPPGTGKT~tla~iI~~L~~~~-~~rILV~ApSN~AVD~L~erL~~~~--~~v 461 (772)
..|.+.|++||..++ ...-.+|..+.|+|||.++..++..+...+ ..++||++|+. .+++..+.+.+.. .++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHHHHCCCceE
Confidence 468999999997654 234567888999999999988888876553 46899999965 6688888877642 222
Q ss_pred EEeccccccccCCchhhhhHHHHHhhccchhHHHHHHHHHhHhhhccCCchHHHHHHHHHHHHHHHHhhcccceeecccc
Q 004121 462 VRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVG 541 (772)
Q Consensus 462 vRl~~~sre~i~~~~~~~~l~~~v~~~~~~~~~~l~kl~~l~~~~~~ls~~d~k~~~~l~~~~~~~il~~a~VI~~T~~~ 541 (772)
..+..... +..+...+|+++|...
T Consensus 115 ~~~~g~~~--------------------------------------------------------~~~~~~~~ivi~t~~~ 138 (500)
T 1z63_A 115 AVFHEDRS--------------------------------------------------------KIKLEDYDIILTTYAV 138 (500)
T ss_dssp EECSSSTT--------------------------------------------------------SCCGGGSSEEEEEHHH
T ss_pred EEEecCch--------------------------------------------------------hccccCCcEEEeeHHH
Confidence 22211000 0013356788887665
Q ss_pred cCCc-ccccCCCcEEEEEcCCCCChhh-----hhhhhhcCCCeEEEecCCCC
Q 004121 542 AGDP-RLANFRFRQVLIDESTQATEPE-----CLIPLVLGAKQVVLVGDHCQ 587 (772)
Q Consensus 542 a~~~-~L~~~~Fd~VIIDEAsQatEpe-----~LipL~~~~k~lILVGD~~Q 587 (772)
.... .+....|++||||||..+..+. .+..+ ....++.|-|=|-|
T Consensus 139 l~~~~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l-~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 139 LLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL-KSKYRIALTGTPIE 189 (500)
T ss_dssp HTTCHHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTS-CEEEEEEECSSCST
T ss_pred HhccchhcCCCcCEEEEeCccccCCHhHHHHHHHHhh-ccCcEEEEecCCCC
Confidence 4432 3556789999999998875543 12222 22357888888876
No 71
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=97.79 E-value=9.9e-05 Score=92.31 Aligned_cols=67 Identities=24% Similarity=0.281 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHhhc----CC--eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 390 ELNASQVFAVKSVLQ----RP--ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~----~~--l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
.+++.|.+|+..++. .. -.+|+||.|+|||.++...+..++..+ .++||++||...+.+..+++.+.
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g-~~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-KQVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC-CeEEEEechHHHHHHHHHHHHHH
Confidence 469999999999885 22 689999999999998776665555554 59999999999999999988753
No 72
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.78 E-value=5.9e-05 Score=86.53 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCceEEEec
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLC 465 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~~vvRl~ 465 (772)
..+.+.|.+||..++...-.+|.+|.|+|||.+.. +..+.. .+++||++|+...+.+..+++.+.++++..+.
T Consensus 24 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~--lp~l~~--~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~ 96 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQ--IPALLL--NGLTVVVSPLISLMKDQVDQLQANGVAAACLN 96 (523)
T ss_dssp SSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHH--HHHHHS--SSEEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHH--HHHHHh--CCCEEEECChHHHHHHHHHHHHHcCCcEEEEe
Confidence 45678899999999988889999999999996533 222322 35899999999999999999998877765553
No 73
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.73 E-value=6.3e-05 Score=87.65 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCceEEEecc
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCA 466 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~~vvRl~~ 466 (772)
..+.+-|.+||..++...-++|.+|.|+|||.+....+ +. . .+++||++|+...+.+..+++.+.++++..+.+
T Consensus 43 ~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpa--l~-~-~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~ 116 (591)
T 2v1x_A 43 EKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPA--LC-S-DGFTLVICPLISLMEDQLMVLKQLGISATMLNA 116 (591)
T ss_dssp CSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHH--HT-S-SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCS
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHH--HH-c-CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 45778899999999988889999999999997543222 22 2 459999999999999999999988777655543
No 74
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.70 E-value=6.8e-05 Score=93.02 Aligned_cols=65 Identities=28% Similarity=0.283 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 391 LNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 391 LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+ +-|.+|+..++...-.+|+||.|||||..+.-++..+... +.++||++||...+.++.+++.+.
T Consensus 58 p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~~~-~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 58 R-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK-GKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp C-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTT-SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHhhc-CCeEEEEeccHHHHHHHHHHHHHH
Confidence 6 8999999999988889999999999997544555555444 459999999999999999998764
No 75
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=97.67 E-value=0.00015 Score=71.36 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=52.7
Q ss_pred CHHHHHHHHHhhc--CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHH
Q 004121 392 NASQVFAVKSVLQ--RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKI 454 (772)
Q Consensus 392 N~sQ~~AV~~aL~--~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL 454 (772)
+..|..|+...+. +++.+|+|+-||+||++..+-+..+.+..+.+|.++||+..+...+.+.+
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~ 100 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDE 100 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTT
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhc
Confidence 4689999998875 67999999999999999655556666666679999999999998887765
No 76
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.64 E-value=4.3e-05 Score=88.08 Aligned_cols=74 Identities=27% Similarity=0.318 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHh---h-cCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCceEEEec
Q 004121 390 ELNASQVFAVKSV---L-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLC 465 (772)
Q Consensus 390 ~LN~sQ~~AV~~a---L-~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~~vvRl~ 465 (772)
.+.+.|.+++..+ + .....+|++|.|||||.+. ++-.+. . ..+|++++||+.-++++.+.+...++++..+.
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~--l~~~~~-~-~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~ 82 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFV--EVLGMQ-L-KKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLI 82 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHH--HHHHHH-H-TCEEEEEESCHHHHHHHHHHHGGGTCCEEEC-
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHH--HHHHHh-C-CCcEEEEcCCHHHHHHHHHHHHhcCCcEEEec
Confidence 3456888866543 3 3568999999999999643 333332 2 35999999999999999999988777776665
Q ss_pred cc
Q 004121 466 AK 467 (772)
Q Consensus 466 ~~ 467 (772)
++
T Consensus 83 gr 84 (540)
T 2vl7_A 83 GK 84 (540)
T ss_dssp --
T ss_pred CC
Confidence 54
No 77
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.63 E-value=0.00017 Score=93.38 Aligned_cols=69 Identities=17% Similarity=0.323 Sum_probs=56.9
Q ss_pred CCCCCHHHHHHHHHhhc-CCeEEEEccCCCchhhHHHHHHH-HHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 004121 388 LPELNASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVY-HMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~-~~l~LIqGPPGTGKT~tla~iI~-~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (772)
++.+|+-|.+|+..++. +...+|.+|.|+|||.+..-.+. .+.+.++.++++++|+...+.+..+.+.+
T Consensus 924 f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~ 994 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYE 994 (1724)
T ss_dssp CSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHH
Confidence 56799999999999875 56799999999999998754444 45555667999999999999998887754
No 78
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.60 E-value=0.00014 Score=83.92 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=51.5
Q ss_pred CCHHHHHHHHH---hh-cCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc----CceEE
Q 004121 391 LNASQVFAVKS---VL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT----GLKVV 462 (772)
Q Consensus 391 LN~sQ~~AV~~---aL-~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~----~~~vv 462 (772)
+-+.|.+++.. ++ .....+|++|.|||||.....-+ +. . ..+|++++||+.-++++.+.+... +++++
T Consensus 4 ~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~--l~-~-~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 4 LRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVS--LE-V-KPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHH--HH-H-CSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHH--Hh-C-CCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 45789885554 34 35688999999999976543322 22 2 459999999999999999887665 45555
Q ss_pred Eecc
Q 004121 463 RLCA 466 (772)
Q Consensus 463 Rl~~ 466 (772)
-+.+
T Consensus 80 ~l~g 83 (551)
T 3crv_A 80 FLVG 83 (551)
T ss_dssp ECCC
T ss_pred EEcc
Confidence 5544
No 79
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.50 E-value=0.00047 Score=81.07 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHhhc---------CCeEEEEccCCCchhhHHHHHHHHHHHcC------CCcEEEEcCcHHHHHHHHHHH
Q 004121 390 ELNASQVFAVKSVLQ---------RPISLIQGPPGTGKTVTSAAIVYHMAKQG------QGQVLVCAPSNVAVDQLAEKI 454 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~---------~~l~LIqGPPGTGKT~tla~iI~~L~~~~------~~rILV~ApSN~AVD~L~erL 454 (772)
.|-+.|+++|...+. ..-.++.-+.|+|||.++..++..+++.+ ..++||++|+ ..+.+..+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 578999999988642 23468888999999999999998887763 2469999997 5677777766
Q ss_pred Hhc---CceEEEeccccccccCCchhhhhHHHHHhhccchhHHHHHHHHHhHhhhccCCchHHHHHHHHHHHHHHHHhhc
Q 004121 455 SAT---GLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQS 531 (772)
Q Consensus 455 ~~~---~~~vvRl~~~sre~i~~~~~~~~l~~~v~~~~~~~~~~l~kl~~l~~~~~~ls~~d~k~~~~l~~~~~~~il~~ 531 (772)
.+. .+.++.+....+. .....+.......+ ....
T Consensus 134 ~~~~~~~~~~~~~~~g~~~-----------------------~~~~~~~~~~~~~~--------------------~~~~ 170 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKD-----------------------EIDSKLVNFISQQG--------------------MRIP 170 (644)
T ss_dssp HHHHGGGCCEEEECSSCHH-----------------------HHHHHHHHHHCCCS--------------------SCCS
T ss_pred HHHcCCCeeEEEEeCCCHH-----------------------HHHHHHHHHHHhcC--------------------CCCC
Confidence 553 1333333221110 00000000000000 0113
Q ss_pred ccceeecccccCC--cccccCCCcEEEEEcCCCCChhh--hhhhh--hcCCCeEEEecCCCC
Q 004121 532 ADVICCTCVGAGD--PRLANFRFRQVLIDESTQATEPE--CLIPL--VLGAKQVVLVGDHCQ 587 (772)
Q Consensus 532 a~VI~~T~~~a~~--~~L~~~~Fd~VIIDEAsQatEpe--~LipL--~~~~k~lILVGD~~Q 587 (772)
.+|+++|...... ..+....|++||+|||..+.-+. ....+ .....++.|-|=|-|
T Consensus 171 ~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiq 232 (644)
T 1z3i_X 171 TPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQ 232 (644)
T ss_dssp CCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSG
T ss_pred CcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCccc
Confidence 5677777544321 23556689999999999875443 22222 124568899999887
No 80
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.39 E-value=0.00025 Score=87.48 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHhhc--------------CCeEEEEccCCCchhhHHHHHHHHHHHc-C-CCcEEEEcCcHHHHHHHHHH
Q 004121 390 ELNASQVFAVKSVLQ--------------RPISLIQGPPGTGKTVTSAAIVYHMAKQ-G-QGQVLVCAPSNVAVDQLAEK 453 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~--------------~~l~LIqGPPGTGKT~tla~iI~~L~~~-~-~~rILV~ApSN~AVD~L~er 453 (772)
.+.+.|.+||..++. ..-.+|+.+.|||||.++..++ .++.. + ..+|||++|++.-++++.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 478999999998875 1357999999999999987666 44432 2 35899999999999999988
Q ss_pred HHhc
Q 004121 454 ISAT 457 (772)
Q Consensus 454 L~~~ 457 (772)
+...
T Consensus 350 f~~f 353 (1038)
T 2w00_A 350 YQRF 353 (1038)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8764
No 81
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.39 E-value=0.00027 Score=72.03 Aligned_cols=66 Identities=17% Similarity=0.362 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHH-HHcC---CCcEEEEcCcHHHHHHHHHHHHh
Q 004121 391 LNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHM-AKQG---QGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 391 LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L-~~~~---~~rILV~ApSN~AVD~L~erL~~ 456 (772)
+.+.|.+++..+......+|.||.|||||+.+...+... ...+ ..++++.+|+...+.++.+++..
T Consensus 62 ~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 62 VKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 567899999999889999999999999999877665543 3322 23799999999999999998865
No 82
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.33 E-value=0.00058 Score=88.43 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=55.8
Q ss_pred CCCCCCHHHHHHHHHhhc-CCeEEEEccCCCchhhHHHHHHHH-HHHc---------CCCcEEEEcCcHHHHHHHHHHHH
Q 004121 387 GLPELNASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYH-MAKQ---------GQGQVLVCAPSNVAVDQLAEKIS 455 (772)
Q Consensus 387 ~~~~LN~sQ~~AV~~aL~-~~l~LIqGPPGTGKT~tla~iI~~-L~~~---------~~~rILV~ApSN~AVD~L~erL~ 455 (772)
++..||+-|.+++..++. +...+|.+|-|+|||.++.-.+.+ |.+. .+.++++++|+.+-+.+..+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 467899999999999986 668999999999999987544444 4332 24589999999999988887765
Q ss_pred h
Q 004121 456 A 456 (772)
Q Consensus 456 ~ 456 (772)
+
T Consensus 156 ~ 156 (1724)
T 4f92_B 156 K 156 (1724)
T ss_dssp H
T ss_pred H
Confidence 4
No 83
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00041 Score=83.62 Aligned_cols=159 Identities=14% Similarity=0.213 Sum_probs=96.6
Q ss_pred CCCCHHHHHHHHHhh----cCCeEEEEccCCCchhhHHHHHHHHHHH--cCCCcEEEEcCcHHHHHHHHHHHHhc--Cce
Q 004121 389 PELNASQVFAVKSVL----QRPISLIQGPPGTGKTVTSAAIVYHMAK--QGQGQVLVCAPSNVAVDQLAEKISAT--GLK 460 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL----~~~l~LIqGPPGTGKT~tla~iI~~L~~--~~~~rILV~ApSN~AVD~L~erL~~~--~~~ 460 (772)
..|-+.|+++|..++ ...-.+|.-+.|+|||.++..++..+.. ...+++||++| ...+.+..+.+.+. +++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 468899999998665 3566789999999999999888877653 34568999999 45577888777664 334
Q ss_pred EEEeccccccccCCchhhhhHHHHHhhccchhHHHHHHHHHhHhhhccCCchHHHHHHHHHHHHHHHHhhcccceeeccc
Q 004121 461 VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCV 540 (772)
Q Consensus 461 vvRl~~~sre~i~~~~~~~~l~~~v~~~~~~~~~~l~kl~~l~~~~~~ls~~d~k~~~~l~~~~~~~il~~a~VI~~T~~ 540 (772)
++.+...... ...+....... ... ........++|+++|..
T Consensus 314 v~~~~g~~~~----------------------r~~~~~~~~~~-------~~~----------~~~~~~~~~dvvitTy~ 354 (800)
T 3mwy_W 314 CICYMGNQKS----------------------RDTIREYEFYT-------NPR----------AKGKKTMKFNVLLTTYE 354 (800)
T ss_dssp EEECCCSSHH----------------------HHHHHHHHSCS-------CC---------------CCCCCSEEEECTT
T ss_pred EEEEeCCHHH----------------------HHHHHHHHhhc-------ccc----------ccccccccCCEEEecHH
Confidence 4433321110 00000000000 000 00012346788888876
Q ss_pred ccCCc--ccccCCCcEEEEEcCCCCChhhh--hhhhh--cCCCeEEEecCCCC
Q 004121 541 GAGDP--RLANFRFRQVLIDESTQATEPEC--LIPLV--LGAKQVVLVGDHCQ 587 (772)
Q Consensus 541 ~a~~~--~L~~~~Fd~VIIDEAsQatEpe~--LipL~--~~~k~lILVGD~~Q 587 (772)
..... .+....|++||||||..+.-+.. ...+. ....+++|-|=|-|
T Consensus 355 ~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiq 407 (800)
T 3mwy_W 355 YILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQ 407 (800)
T ss_dssp HHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCS
T ss_pred HHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCC
Confidence 54332 35566899999999988743331 11111 23457889999877
No 84
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.27 E-value=0.00046 Score=81.54 Aligned_cols=59 Identities=24% Similarity=0.401 Sum_probs=44.9
Q ss_pred HhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCceEEEe
Q 004121 401 SVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRL 464 (772)
Q Consensus 401 ~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~~vvRl 464 (772)
.++.+...++.||.|||||+.+ +..+... .+.++++|+..++.++.+++.+.++++.-+
T Consensus 151 r~l~rk~vlv~apTGSGKT~~a---l~~l~~~--~~gl~l~PtR~LA~Qi~~~l~~~g~~v~ll 209 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHA---IQKYFSA--KSGVYCGPLKLLAHEIFEKSNAAGVPCDLV 209 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHH---HHHHHHS--SSEEEEESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HhcCCCEEEEEcCCCCCHHHHH---HHHHHhc--CCeEEEeCHHHHHHHHHHHHHhcCCcEEEE
Confidence 3455678999999999999933 2333443 356999999999999999999887765544
No 85
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.21 E-value=0.00052 Score=81.09 Aligned_cols=54 Identities=24% Similarity=0.403 Sum_probs=43.9
Q ss_pred cCCeEEEEccCCCchhhHH-HHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcC
Q 004121 404 QRPISLIQGPPGTGKTVTS-AAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATG 458 (772)
Q Consensus 404 ~~~l~LIqGPPGTGKT~tl-a~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~ 458 (772)
.....+|+||.|||||.+. ..++..+... ..++||++||...+.++.+++...+
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~-~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQK-RLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-CCcEEEEccHHHHHHHHHHHHhcCC
Confidence 5678999999999999985 4555555554 4599999999999999999987654
No 86
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.21 E-value=0.0003 Score=79.27 Aligned_cols=52 Identities=27% Similarity=0.433 Sum_probs=42.9
Q ss_pred cCCeEEEEccCCCchhhH-HHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 004121 404 QRPISLIQGPPGTGKTVT-SAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 404 ~~~l~LIqGPPGTGKT~t-la~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (772)
.+..++|.||.|||||.+ +..++..+...+ .++||++|+...+.++.+++..
T Consensus 20 ~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~-~~~lvl~Ptr~La~Q~~~~l~g 72 (459)
T 2z83_A 20 KRQMTVLDLHPGSGKTRKILPQIIKDAIQQR-LRTAVLAPTRVVAAEMAEALRG 72 (459)
T ss_dssp TTCEEEECCCTTSCTTTTHHHHHHHHHHHTT-CCEEEEECSHHHHHHHHHHTTT
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEECchHHHHHHHHHHhcC
Confidence 367899999999999998 455665565544 5999999999999999999863
No 87
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.11 E-value=0.00068 Score=76.18 Aligned_cols=57 Identities=21% Similarity=0.398 Sum_probs=45.2
Q ss_pred HHHhhc-CCeEEEEccCCCchhhH-HHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 004121 399 VKSVLQ-RPISLIQGPPGTGKTVT-SAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 399 V~~aL~-~~l~LIqGPPGTGKT~t-la~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (772)
+..++. ++..+|+||.|||||.. +..++..+...+ .++|+++||...++++.+.+..
T Consensus 12 i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~-~~~lvl~Ptr~La~Q~~~~l~g 70 (451)
T 2jlq_A 12 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRR-LRTLILAPTRVVAAEMEEALRG 70 (451)
T ss_dssp CGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHTTT
T ss_pred HHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC-CcEEEECCCHHHHHHHHHHhcC
Confidence 444554 56779999999999996 566666666654 5999999999999999998853
No 88
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.07 E-value=0.0034 Score=70.16 Aligned_cols=53 Identities=32% Similarity=0.463 Sum_probs=36.0
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEE-EcCcH--HHHHHHHHHHHhcCce
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV-CAPSN--VAVDQLAEKISATGLK 460 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV-~ApSN--~AVD~L~erL~~~~~~ 460 (772)
+.++.||+|+|||||++.++..+...+. +|++ .+.+. .|++++...-...++.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~-kVllv~~D~~r~~a~eqL~~~~~~~gv~ 154 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGY-KVGLVAADVYRPAAYDQLLQLGNQIGVQ 154 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTC-CEEEEEECCSCHHHHHHHHHHHHTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEecCccchhHHHHHHHHHHhcCCc
Confidence 6788999999999999999998877664 6655 54433 3455544433333443
No 89
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.07 E-value=0.001 Score=74.28 Aligned_cols=50 Identities=24% Similarity=0.434 Sum_probs=40.9
Q ss_pred CCeEEEEccCCCchhhHH-HHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTS-AAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tl-a~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~ 455 (772)
....+|+||.|||||.+. ..++..++..+ .++|+++||...++++.+.+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g-~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKR-LRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEECcHHHHHHHHHHHhC
Confidence 357899999999999986 44554555554 599999999999999998875
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.05 E-value=0.00087 Score=65.04 Aligned_cols=48 Identities=23% Similarity=0.163 Sum_probs=35.4
Q ss_pred CHHHHHHHHHhhc---------CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEE
Q 004121 392 NASQVFAVKSVLQ---------RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (772)
Q Consensus 392 N~sQ~~AV~~aL~---------~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV 439 (772)
++.|++|+..+.. ....+|.||||||||+++..++..+....+.+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 6789988887651 35789999999999999888887776333334444
No 91
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.95 E-value=0.0057 Score=68.46 Aligned_cols=54 Identities=33% Similarity=0.428 Sum_probs=37.6
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEE-EEcCcH--HHHHHHHHHHHhcCceE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVL-VCAPSN--VAVDQLAEKISATGLKV 461 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rIL-V~ApSN--~AVD~L~erL~~~~~~v 461 (772)
+.+|.|+||+|||||++.++..+.+.+. +|+ +.+.+. .|++++...-...++.+
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~-kVllv~~D~~R~aa~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGY-KVGVVCSDTWRPGAYHQLRQLLDRYHIEV 158 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEECCCSSTHHHHHHHHHHGGGTCEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCC-eEEEEeCCCcchhHHHHHHHHHHhcCCcE
Confidence 6789999999999999999998887665 665 454433 45555554444444444
No 92
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.93 E-value=0.00051 Score=80.69 Aligned_cols=50 Identities=30% Similarity=0.399 Sum_probs=39.3
Q ss_pred cCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 404 QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 404 ~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
.+...+++||.|||||...... +++.+ .++||++|+...+.++.+++.+.
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~---ll~~g-~~vLVl~PTReLA~Qia~~l~~~ 280 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAA---YAAQG-YKVLVLNPSVAATLGFGAYMSKA 280 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHH---HHHTT-CCEEEEESCHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCchhHHHHHHHH---HHHCC-CeEEEEcchHHHHHHHHHHHHHH
Confidence 4567899999999999765432 33343 49999999999999999988653
No 93
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.93 E-value=0.0026 Score=64.32 Aligned_cols=37 Identities=24% Similarity=0.186 Sum_probs=31.6
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCc
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS 443 (772)
.+.++.||.|+|||+.+..++......+. +||+..|.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~-kVli~k~~ 65 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQ-HAIVFKPC 65 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCC-EEEEEEec
Confidence 47889999999999999999988877664 89988764
No 94
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.73 E-value=0.017 Score=57.61 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=42.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHH----HHHHHHHHHHhcCceEEEec
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV----AVDQLAEKISATGLKVVRLC 465 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~----AVD~L~erL~~~~~~vvRl~ 465 (772)
+++.+|.+++|+|||+.+..++...+.++. ||+++-+-.. .=.+++++| ++.+.+.+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~-rV~~vQF~Kg~~~~gE~~~l~~L---~v~~~~~g 88 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK-NVGVVQFIKGTWPNGERNLLEPH---GVEFQVMA 88 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC-CEEEEESSCCSSCCHHHHHHGGG---TCEEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEeeCCCCCccHHHHHHhC---CcEEEEcc
Confidence 689999999999999999999998888875 9999966542 222344444 35666655
No 95
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.56 E-value=0.0034 Score=62.60 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=31.7
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS 443 (772)
..+.+|.||.|+|||+-+...+......+ .+|++..|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~-~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEccc
Confidence 35899999999999999988888877665 588888764
No 96
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.43 E-value=0.0068 Score=59.59 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=26.2
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
...+|.||||||||+++..+...+...+ .+++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~-~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN-VSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT-CCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEE
Confidence 6789999999999999888777766544 355543
No 97
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.30 E-value=0.0095 Score=59.41 Aligned_cols=49 Identities=18% Similarity=0.107 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHhhc---CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 391 LNASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 391 LN~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
.|....+++..... ....+|.||||||||+++..++..+...+ .+++.+
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~-~~~~~~ 86 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELE-RRSFYI 86 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEE
Confidence 45666666666653 46789999999999999888877766543 344443
No 98
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=96.18 E-value=0.024 Score=67.76 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (772)
...+-|..++-.++... +.+.+.|||||.+.+--++.- ...+..++|+|||..-+.+.++.+..
T Consensus 83 ~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~-aL~g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLN-ALTGKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHH-HTTSSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHH-HHcCCCEEEEeCCHHHHHHHHHHHHH
Confidence 46789999999888666 889999999998765444421 12345899999999988887776644
No 99
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.0031 Score=67.67 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=23.7
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (772)
.+..+|.||||||||+++..++..|...
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3578999999999999999888887653
No 100
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.08 E-value=0.0077 Score=72.27 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhc-CCeEEEEccCCCchhhHHHHHHHHHH-HcC-CCcEEEEcCcHHHHHHHHHHHHh
Q 004121 393 ASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYHMA-KQG-QGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 393 ~sQ~~AV~~aL~-~~l~LIqGPPGTGKT~tla~iI~~L~-~~~-~~rILV~ApSN~AVD~L~erL~~ 456 (772)
..|+++|..++. +..++|.||.|+|||+.+..++.... ..+ +.+|++++|+..++.++++++.+
T Consensus 96 ~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 96 HAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp GGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHH
Confidence 468888888775 56899999999999996555533221 111 34699999999999999998854
No 101
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.08 E-value=0.0077 Score=60.69 Aligned_cols=52 Identities=29% Similarity=0.436 Sum_probs=40.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcC
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATG 458 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~ 458 (772)
..+++|.||||+|||+.+..++..++..+ .++++.+.... .+++.+++...+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~-~~v~~~~~e~~-~~~~~~~~~~~g 74 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMG-EPGIYVALEEH-PVQVRQNMAQFG 74 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTT-CCEEEEESSSC-HHHHHHHHHTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEEEccCC-HHHHHHHHHHcC
Confidence 45899999999999999999988887765 47877765443 467777776544
No 102
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.05 E-value=0.0062 Score=58.08 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhc---CCeEEEEccCCCchhhHHHHHHHHHHH
Q 004121 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (772)
Q Consensus 393 ~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (772)
+.+.+.+...+. ....+|.||||||||+++..++..+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 455666666553 357899999999999998888777654
No 103
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.98 E-value=0.0056 Score=68.47 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=44.1
Q ss_pred hcCCeEEEEccCCCchhhHHH-HHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCc
Q 004121 403 LQRPISLIQGPPGTGKTVTSA-AIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGL 459 (772)
Q Consensus 403 L~~~l~LIqGPPGTGKT~tla-~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~ 459 (772)
+.....+|+||.|||||.+.. .++..+... +.++|+++||...+.++.+.+...++
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-~~~~lil~Ptr~La~Q~~~~l~~~~v 62 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARR-RLRTLVLAPTRVVLSEMKEAFHGLDV 62 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHTTTSCE
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-CCeEEEEcchHHHHHHHHHHHhcCCe
Confidence 346788999999999999864 444445544 45999999999999999999976543
No 104
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=95.96 E-value=0.012 Score=70.61 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (772)
...+-|..++-.++... +.+.+-|+|||.+.+--++.-. ..+.+|+|+|||..-+.+..+.+..
T Consensus 111 rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~a-L~g~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 111 RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNA-LAGNGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHH-TTTSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHH-HhCCCeEEEeCCHHHHHHHHHHHHH
Confidence 45789999998777554 8899999999987654443212 2235899999999988777776643
No 105
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=95.94 E-value=0.02 Score=68.37 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (772)
...+-|..++-.++... +.+.+.|||||.+.+--++.... .+.+++|+|||..-+.+..+.+..
T Consensus 74 ~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-~g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL-TGKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT-TSSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH-cCCcEEEEcCCHHHHHHHHHHHHH
Confidence 35689999998877655 88999999999876544432222 335899999999988887776644
No 106
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.87 E-value=0.009 Score=60.25 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=40.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcC
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATG 458 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~ 458 (772)
..+++|.|+||+|||+.+..+++..+..++.++++.+.... .+++.+++...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~~~ 82 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMASFG 82 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHTTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHHcC
Confidence 45899999999999999999887765554558888876543 566777776543
No 107
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.83 E-value=0.016 Score=67.70 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=52.6
Q ss_pred CHHHHHHHHHh---h-cCCeEEEEccCCCchhhHHHH-HHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc----CceEE
Q 004121 392 NASQVFAVKSV---L-QRPISLIQGPPGTGKTVTSAA-IVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT----GLKVV 462 (772)
Q Consensus 392 N~sQ~~AV~~a---L-~~~l~LIqGPPGTGKT~tla~-iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~----~~~vv 462 (772)
-+.|++.+..+ + .....++++|.|||||..... ++..+...+ .+|+++++|+.-+.++.+-+... .++++
T Consensus 5 R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~-~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~ 83 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK-LKVLYLVRTNSQEEQVIKELRSLSSTMKIRAI 83 (620)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHHHHHHHHSCCCEE
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC-CeEEEECCCHHHHHHHHHHHHHHhhccCeEEE
Confidence 46787776543 3 467899999999999976543 333343334 59999999999999998776543 45555
Q ss_pred Eeccc
Q 004121 463 RLCAK 467 (772)
Q Consensus 463 Rl~~~ 467 (772)
-+.++
T Consensus 84 ~l~gr 88 (620)
T 4a15_A 84 PMQGR 88 (620)
T ss_dssp ECCCH
T ss_pred EEECC
Confidence 55443
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.81 E-value=0.0078 Score=59.21 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=31.5
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS 443 (772)
..+.+|.||||+||||.+..++..+...+ .++++..+.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGK-KKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT-CEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEeec
Confidence 45789999999999999998888877665 488887765
No 109
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.81 E-value=0.014 Score=70.03 Aligned_cols=64 Identities=17% Similarity=0.086 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (772)
...+-|..++-.++... +.+...|||||.+.+--++.... .+.+++|+|||..-+.+..+.+..
T Consensus 79 ~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-~G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL-TGKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT-TCSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH-hCCCEEEEeCCHHHHHHHHHHHHH
Confidence 45789999998888766 88999999999876554432222 345899999999988887776654
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.80 E-value=0.01 Score=56.24 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHH
Q 004121 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAK 431 (772)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (772)
...|..+..++... .....+|.||+|+|||+++..+...+..
T Consensus 21 ~g~n~~~~~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 21 GTENAELVYVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp SCCTHHHHHHCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred cCccHHHHHHHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35777777776665 5678899999999999998887766554
No 111
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.76 E-value=0.018 Score=61.06 Aligned_cols=35 Identities=29% Similarity=0.227 Sum_probs=27.2
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
...+|.||||||||+++..+...+... +.+++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~ 72 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSS 72 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 468999999999999988888777655 34666554
No 112
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.73 E-value=0.0076 Score=57.46 Aligned_cols=39 Identities=18% Similarity=0.423 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhc---CCeEEEEccCCCchhhHHHHHHHHHHH
Q 004121 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (772)
Q Consensus 393 ~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (772)
+.+.+.+...+. ....+|.||||||||+++..++..+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 28 DTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345555555543 356899999999999998888777654
No 113
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.72 E-value=0.0097 Score=58.15 Aligned_cols=40 Identities=35% Similarity=0.579 Sum_probs=29.4
Q ss_pred CHHHHHHHHHhhcC---CeEEEEccCCCchhhHHHHHHHHHHH
Q 004121 392 NASQVFAVKSVLQR---PISLIQGPPGTGKTVTSAAIVYHMAK 431 (772)
Q Consensus 392 N~sQ~~AV~~aL~~---~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (772)
.+...+.+...+.. +..+|.||||||||+++..++..+..
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 35566666666642 35899999999999988877766643
No 114
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=95.60 E-value=0.0043 Score=72.59 Aligned_cols=58 Identities=22% Similarity=0.377 Sum_probs=47.0
Q ss_pred HHHhhcCCeEEEEccCCCchhhHH-HHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 399 VKSVLQRPISLIQGPPGTGKTVTS-AAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 399 V~~aL~~~l~LIqGPPGTGKT~tl-a~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+..++.....++.+|.|||||.+. ..++..+... ..++||++||...++++.+.+...
T Consensus 180 i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-~~~vLvl~PtreLa~Qi~~~l~~~ 238 (618)
T 2whx_A 180 EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-RLRTLILAPTRVVAAEMEEALRGL 238 (618)
T ss_dssp GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHTTTS
T ss_pred HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEcChHHHHHHHHHHhcCC
Confidence 555566788999999999999984 5566666654 459999999999999999998643
No 115
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.56 E-value=0.026 Score=57.05 Aligned_cols=39 Identities=21% Similarity=0.102 Sum_probs=30.9
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN 444 (772)
..+.+|.||-|+|||+.+..++..+...+ .++++..|.-
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g-~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAK-QKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcC-CceEEEEecc
Confidence 35789999999999998888887776655 4888887743
No 116
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.45 E-value=0.011 Score=61.19 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=18.6
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
...+|.||||||||+++..++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999987666543
No 117
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.43 E-value=0.016 Score=62.35 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=30.5
Q ss_pred CHHHHHHHHHhhc-------CCeEEEEccCCCchhhHHHHHHHHHHH
Q 004121 392 NASQVFAVKSVLQ-------RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (772)
Q Consensus 392 N~sQ~~AV~~aL~-------~~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (772)
.+.+.+.+...+. .+..+|.||||||||+++..++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567777776651 357899999999999998888877644
No 118
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.0073 Score=67.39 Aligned_cols=22 Identities=45% Similarity=0.751 Sum_probs=18.9
Q ss_pred EEEEccCCCchhhHHHHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L 429 (772)
.|+.||||||||.++.+++..+
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999887777654
No 119
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.34 E-value=0.013 Score=61.23 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=19.0
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
...+|.||||||||+++..+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 56899999999999987766553
No 120
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.33 E-value=0.032 Score=59.44 Aligned_cols=54 Identities=26% Similarity=0.390 Sum_probs=37.4
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc-C--cHHHHHHHHHHHHhcCceE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA-P--SNVAVDQLAEKISATGLKV 461 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A-p--SN~AVD~L~erL~~~~~~v 461 (772)
+.+|.||+|+||||++..++..+...+ ++|++.+ . ...+++++...+...++.+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g-~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~ 162 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEG-KSVVLAAADTFRAAAIEQLKIWGERVGATV 162 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEECTTCHHHHHHHHHHHHHHTCEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcC-CEEEEEccccccHHHHHHHHHHHHHcCCcE
Confidence 678999999999999999998876654 4776654 3 3345566554444444444
No 121
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.33 E-value=0.021 Score=56.62 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=37.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
..+++|.||||+|||+++..++..+...+ ++|++..... ..+++..++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~-~~v~~~~~~~-~~~~~~~~~~~~ 73 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDG-DPCIYVTTEE-SRDSIIRQAKQF 73 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHT-CCEEEEESSS-CHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCC-CeEEEEEccc-CHHHHHHHHHHh
Confidence 45889999999999999998887776654 4788776544 245566665543
No 122
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.32 E-value=0.0072 Score=60.81 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.3
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
..+|.||||||||+.+..++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999998887765
No 123
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.27 E-value=0.014 Score=57.68 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=28.6
Q ss_pred CHHHHHHHHHhhcC----CeEEEEccCCCchhhHHHHHHHHHH
Q 004121 392 NASQVFAVKSVLQR----PISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 392 N~sQ~~AV~~aL~~----~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
.+.+.+.+...+.. ...+|.||||||||+++..++..+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35556666666542 3789999999999999887776654
No 124
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.25 E-value=0.015 Score=59.26 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=31.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS 443 (772)
..+.+|.||||+||||.+..++..+...+. +|++..+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~-kVli~~~~ 49 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADV-KYLVFKPK 49 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC-CEEEEEEC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEEec
Confidence 458899999999999999999988877654 88888553
No 125
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.24 E-value=0.0091 Score=59.68 Aligned_cols=23 Identities=39% Similarity=0.704 Sum_probs=19.4
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
+.+|.|+||||||+.++..+..+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999987766554
No 126
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.22 E-value=0.017 Score=61.58 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=28.1
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHH-HcCCCcEEEEc
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMA-KQGQGQVLVCA 441 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~-~~~~~rILV~A 441 (772)
...+|+||||||||+++..+...+. ..+ .+|+.+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g-~~v~~~~ 188 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKG-VSTTLLH 188 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSC-CCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcC-CcEEEEE
Confidence 5789999999999999999888887 655 3666543
No 127
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.15 E-value=0.015 Score=60.74 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
....+|.||||||||+++..+...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999887766554
No 128
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.13 E-value=0.02 Score=61.70 Aligned_cols=39 Identities=28% Similarity=0.326 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcC-------C--eEEEEccCCCchhhHHHHHHHHHHH
Q 004121 393 ASQVFAVKSVLQR-------P--ISLIQGPPGTGKTVTSAAIVYHMAK 431 (772)
Q Consensus 393 ~sQ~~AV~~aL~~-------~--l~LIqGPPGTGKT~tla~iI~~L~~ 431 (772)
+.+.+.+...+.. . ..+|.||||||||+++..+...+..
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 23 EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4555555554431 3 7999999999999998877766543
No 129
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.10 E-value=0.016 Score=54.29 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=18.4
Q ss_pred CCeEEEEccCCCchhhHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (772)
....+|+||||||||+++..+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 55789999999999987765543
No 130
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.09 E-value=0.016 Score=62.76 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=19.9
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
....++.||||||||+++..+...+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999876666544
No 131
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.08 E-value=0.02 Score=60.99 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=18.8
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.-.||.||||||||+++..++..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999987766554
No 132
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.04 E-value=0.022 Score=58.05 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=19.3
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
...+|.||||||||+++..+...+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999877766543
No 133
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.98 E-value=0.011 Score=62.31 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.6
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
..|++||||||||+++..++..+
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999887777665
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.97 E-value=0.028 Score=60.55 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhc-------CCeEEEEccCCCchhhHHHHHHHHHHHc
Q 004121 393 ASQVFAVKSVLQ-------RPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (772)
Q Consensus 393 ~sQ~~AV~~aL~-------~~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (772)
+.+.+.+...+. .+..+|.||||||||+++..++..+...
T Consensus 26 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455555554432 3478999999999999988887776543
No 135
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.96 E-value=0.026 Score=60.51 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhc-------CCeEEEEccCCCchhhHHHHHHHHHHHc
Q 004121 393 ASQVFAVKSVLQ-------RPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (772)
Q Consensus 393 ~sQ~~AV~~aL~-------~~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (772)
+.+.+.+...+. ....+|.||||||||+++..++..+...
T Consensus 26 ~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 566666766654 3578999999999999988877766544
No 136
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.89 E-value=0.022 Score=58.05 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=27.4
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
..++.|+||+|||+++..++..+...+. +|+++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~-~V~v~ 40 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGV-RVMAG 40 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC-CEEEE
Confidence 3678999999999999999999988765 66543
No 137
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.77 E-value=0.03 Score=59.75 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=40.7
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (772)
..+++|.|+||+|||+.+..++..++..+ .+||+.+.- ...+++..|+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESS-SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECC-CCHHHHHHHHHH
Confidence 45899999999999999999998887765 588888765 456777777764
No 138
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.014 Score=65.30 Aligned_cols=32 Identities=38% Similarity=0.524 Sum_probs=22.7
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (772)
=+|+.||||||||.++.+++..+ +..++.+..
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~----~~~f~~v~~ 248 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQT----NATFLKLAA 248 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEG
T ss_pred eeEEECcCCCCHHHHHHHHHHHh----CCCEEEEeh
Confidence 46899999999999877766553 235554443
No 139
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.77 E-value=0.022 Score=59.66 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=20.4
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
..++|.||||||||+++..+...+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 3689999999999998877766554
No 140
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.69 E-value=0.0097 Score=61.25 Aligned_cols=22 Identities=45% Similarity=0.700 Sum_probs=18.3
Q ss_pred eEEEEccCCCchhhHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (772)
-.+|.||||||||+++..+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999988776654
No 141
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.66 E-value=0.028 Score=55.79 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=32.0
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCc
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS 443 (772)
.+.++.||+|+|||+.+..++..+...+ .+|++..|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g-~kV~v~k~~ 45 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAK-QKIQVFKPE 45 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-CEEEEEEec
Confidence 4889999999999999999998887665 499998876
No 142
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.65 E-value=0.024 Score=59.46 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=29.3
Q ss_pred CHHHHHHHHHhhcC---CeEEEEccCCCchhhHHHHHHHHHH
Q 004121 392 NASQVFAVKSVLQR---PISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 392 N~sQ~~AV~~aL~~---~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
.+...+.+...+.. +.++|.||||||||+++..++..+.
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 45666666666642 3689999999999999887776654
No 143
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.017 Score=63.91 Aligned_cols=23 Identities=43% Similarity=0.745 Sum_probs=18.6
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
=+|+.||||||||.++.+++..+
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHhh
Confidence 36899999999999877776543
No 144
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.017 Score=64.58 Aligned_cols=23 Identities=43% Similarity=0.719 Sum_probs=18.8
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
=+|+.||||||||.++.+++..+
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 46899999999999887776553
No 145
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.50 E-value=0.033 Score=58.91 Aligned_cols=50 Identities=28% Similarity=0.365 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHhhcC----CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcH
Q 004121 391 LNASQVFAVKSVLQR----PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444 (772)
Q Consensus 391 LN~sQ~~AV~~aL~~----~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN 444 (772)
.++...+.+...+.. .+.++.||||||||+++..+...+ +.+++-+..++
T Consensus 30 g~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----~~~~~~i~~~~ 83 (324)
T 3u61_B 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----NADMMFVNGSD 83 (324)
T ss_dssp CCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----TEEEEEEETTT
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----CCCEEEEcccc
Confidence 356677777777652 466888889999999887766544 23555554444
No 146
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.47 E-value=0.017 Score=54.01 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=16.8
Q ss_pred CCeEEEEccCCCchhhHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAI 425 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~i 425 (772)
....+|+||||||||+++..+
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGG
T ss_pred CCcEEEECCCCccHHHHHHHH
Confidence 456899999999999865443
No 147
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.46 E-value=0.029 Score=59.94 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=19.7
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.-.||.||||||||+++..++..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 357999999999999887776654
No 148
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.45 E-value=0.035 Score=59.69 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=20.4
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
...||.||||||||+++..+...+
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999887777665
No 149
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.42 E-value=0.063 Score=63.22 Aligned_cols=64 Identities=28% Similarity=0.383 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHhh---cCC--eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 390 ELNASQVFAVKSVL---QRP--ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL---~~~--l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
.++..|.+|+...+ ..+ ..++.|.+|||||.+++.++.++ +.++||++++...+.++.+.|...
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~----~~~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL----GRPALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecCHHHHHHHHHHHHHH
Confidence 56778888887654 233 46789999999999999887654 348999999999999999999876
No 150
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.38 E-value=0.069 Score=59.64 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=27.0
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHc-CCCcEEEEc
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCA 441 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~-~~~rILV~A 441 (772)
+..+|.||||||||+++..+...+... +..+++.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 468999999999999888877776554 244666554
No 151
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.38 E-value=0.034 Score=56.86 Aligned_cols=23 Identities=48% Similarity=0.670 Sum_probs=18.8
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.-.+|.||||||||+++..+...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35789999999999988776654
No 152
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.38 E-value=0.029 Score=63.97 Aligned_cols=24 Identities=29% Similarity=0.664 Sum_probs=20.2
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
+..+|.||||||||+++..++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999887776554
No 153
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.33 E-value=0.023 Score=59.59 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHc
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (772)
..+|.||||||||+++..++..+...
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999888777766543
No 154
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.33 E-value=0.037 Score=59.25 Aligned_cols=39 Identities=31% Similarity=0.519 Sum_probs=27.8
Q ss_pred CHHHHHHHHHhhcC-Ce--EEEEccCCCchhhHHHHHHHHHH
Q 004121 392 NASQVFAVKSVLQR-PI--SLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 392 N~sQ~~AV~~aL~~-~l--~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
++...+.+...+.. .+ +++.||||||||+++..++..+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 34455555555543 33 89999999999999887776654
No 155
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.33 E-value=0.069 Score=56.54 Aligned_cols=54 Identities=30% Similarity=0.452 Sum_probs=37.2
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCc---HHHHHHHHHHHHhcCceE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS---NVAVDQLAEKISATGLKV 461 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS---N~AVD~L~erL~~~~~~v 461 (772)
+.+|.|++|+||||++..++..+...+ ++|++...- +.|.+++.......++.+
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g-~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v 156 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKG-FKVGLVGADVYRPAALEQLQQLGQQIGVPV 156 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTT-CCEEEEECCCSSSHHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEecCCCCHHHHHHHHHHhccCCeEE
Confidence 567889999999999999998887765 477766543 456665544333334444
No 156
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.19 E-value=0.034 Score=59.62 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=19.6
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
..++|.|||||||||++..+...+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999999876666544
No 157
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.17 E-value=0.033 Score=60.66 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=35.0
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKI 454 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL 454 (772)
.+++|.||||+|||+.+..++..+...+ ++|+.++.-...-...++++
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~g-g~VlyId~E~s~~~~ra~rl 109 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMG-GVAAFIDAEHALDPVYAKNL 109 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT-CCEEEEESSCCCCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEEecccccchHHHHHc
Confidence 4789999999999999999988877665 47777765544333344444
No 158
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.17 E-value=0.052 Score=56.43 Aligned_cols=50 Identities=18% Similarity=0.411 Sum_probs=35.2
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcC----------CCcEEEEcCcHHHHHHHHHHHHh
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQG----------QGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~----------~~rILV~ApSN~AVD~L~erL~~ 456 (772)
..+++|.||||+|||+.+..++..+. .+ ..+|++++.-... +.+..|+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~ 89 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHA 89 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCH-HHHHHHHHH
Confidence 56899999999999999988887554 33 3577766654433 555555543
No 159
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.14 E-value=0.024 Score=63.12 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=18.8
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
=+|+.||||||||.++.+++..+
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHHh
Confidence 46899999999999877776553
No 160
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.13 E-value=0.039 Score=56.70 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=19.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
....+|.||||||||+++..+...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh
Confidence 567899999999999876665543
No 161
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.13 E-value=0.031 Score=59.50 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=18.8
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
...+|.||||||||+++..+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999987766443
No 162
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.12 E-value=0.029 Score=59.69 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=24.6
Q ss_pred HHHHHHHHhh-cCCeEEEEccCCCchhhHHHHHHHH
Q 004121 394 SQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 394 sQ~~AV~~aL-~~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
...+++..++ .....++.||||||||+++..+...
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3444444443 4678899999999999987766554
No 163
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.07 E-value=0.039 Score=59.94 Aligned_cols=25 Identities=32% Similarity=0.672 Sum_probs=20.0
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
....++.||||||||+++..+...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999877666544
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.06 E-value=0.04 Score=57.59 Aligned_cols=39 Identities=36% Similarity=0.603 Sum_probs=28.7
Q ss_pred CHHHHHHHHHhhcC---CeEEEEccCCCchhhHHHHHHHHHH
Q 004121 392 NASQVFAVKSVLQR---PISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 392 N~sQ~~AV~~aL~~---~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
++...+.+...+.. +.++|.||||||||+++..++..+.
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 45556666665542 3489999999999998888777664
No 165
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.06 E-value=0.029 Score=53.09 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=18.8
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
+.+|.||||+||||++..+...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887766543
No 166
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.06 E-value=0.071 Score=60.67 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=39.4
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC---cHHHHHHHHHHHHhcCceEEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP---SNVAVDQLAEKISATGLKVVR 463 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap---SN~AVD~L~erL~~~~~~vvR 463 (772)
..+|.|+||+||||++..+++.+.+.+. +|++++. ...|++.+...-...++.++.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~ 161 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYG 161 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSSHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEeccccchhHHHHHHHHhhccCceEEc
Confidence 4678899999999999999998887654 6665554 455666665444444555543
No 167
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.06 E-value=0.028 Score=60.27 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=32.2
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcC-CCcEEEEcCcHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQG-QGQVLVCAPSNV 445 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~-~~rILV~ApSN~ 445 (772)
.++++|.||||+|||+.+..++....+.+ ..+++.+..-+.
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 45789999999999999999998888762 457777665443
No 168
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.03 E-value=0.026 Score=58.25 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=19.2
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
...+|.||||||||+++..+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999988776654
No 169
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.02 E-value=0.055 Score=60.62 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=39.7
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~ 455 (772)
..+++|.|+||+|||+.+..++..+....+.+|++.+.-.. ..++..|+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHHH
Confidence 46899999999999999999998887654458998886543 367777764
No 170
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.00 E-value=0.032 Score=59.65 Aligned_cols=48 Identities=29% Similarity=0.376 Sum_probs=31.7
Q ss_pred CHHHHHHHHHhh-cC---CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEE
Q 004121 392 NASQVFAVKSVL-QR---PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (772)
Q Consensus 392 N~sQ~~AV~~aL-~~---~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV 439 (772)
++...++++.++ .. +..+|.||||||||+++..++..+.....+.|.+
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~ 70 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI 70 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEe
Confidence 456666676666 32 3489999999999999887777665443344443
No 171
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.93 E-value=0.05 Score=57.62 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=28.7
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
.+.+|.||+|+||||++..++..+....+.+|++++
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 478899999999999999999887753334777664
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.92 E-value=0.035 Score=58.46 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=20.0
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
...+|.||||||||+++..+...+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999887776544
No 173
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.91 E-value=0.064 Score=56.12 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=36.0
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~ 455 (772)
..+++|.||||+|||+.+..++..+....+.+|++...... ..++..|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~-~~~~~~r~~ 84 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLI 84 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC-HHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC-HHHHHHHHH
Confidence 46999999999999999988888776653348887765432 234555543
No 174
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.89 E-value=0.032 Score=59.41 Aligned_cols=37 Identities=41% Similarity=0.581 Sum_probs=27.1
Q ss_pred HHHHHHHHhhcC---CeEEEEccCCCchhhHHHHHHHHHH
Q 004121 394 SQVFAVKSVLQR---PISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 394 sQ~~AV~~aL~~---~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
...+.+...+.. +..+|.||||||||+++..++..+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345556665542 4589999999999999887777654
No 175
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.89 E-value=0.044 Score=59.32 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=19.0
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
..+||.||||||||+++..++..
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999988776544
No 176
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.87 E-value=0.046 Score=59.76 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=26.3
Q ss_pred CHHHHHHHHHhh---------------cCCeEEEEccCCCchhhHHHHHHHH
Q 004121 392 NASQVFAVKSVL---------------QRPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 392 N~sQ~~AV~~aL---------------~~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.+.+++.+...+ ....+||.||||||||+++..+...
T Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 120 QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 456666666654 1256899999999999987666443
No 177
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.86 E-value=0.082 Score=51.19 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=23.2
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVL 438 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rIL 438 (772)
+..|.||||+||||++..+...+-..+. +++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~-~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGK-KVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC--EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-eEE
Confidence 4689999999999998887776655443 554
No 178
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.78 E-value=0.09 Score=58.70 Aligned_cols=56 Identities=23% Similarity=0.390 Sum_probs=37.7
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC---cHHHHHHHHHHHHhcCceEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP---SNVAVDQLAEKISATGLKVV 462 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap---SN~AVD~L~erL~~~~~~vv 462 (772)
..+|.|++|+|||||++.+++.+.+..+.+|++++- ...|++++...-...++.++
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~ 160 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEE
Confidence 566789999999999999999998872347765532 34566665433333344443
No 179
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.78 E-value=0.025 Score=63.44 Aligned_cols=23 Identities=43% Similarity=0.696 Sum_probs=18.5
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
=.|+.||||||||.++.+++..+
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhcc
Confidence 46899999999999877766543
No 180
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.75 E-value=0.03 Score=59.10 Aligned_cols=23 Identities=43% Similarity=0.639 Sum_probs=18.9
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
..++|.||||||||+++..+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 45899999999999987766654
No 181
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.70 E-value=0.042 Score=59.63 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=31.5
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN 444 (772)
..+++|.||||+|||+.+..++..+.+.+ .++++.....
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g-~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAG-GIAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC-CeEEEEECCC
Confidence 35899999999999999999998887765 4777766544
No 182
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.68 E-value=0.033 Score=53.28 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=19.1
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.+.+|.||||+||||++..+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999987776654
No 183
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.58 E-value=0.036 Score=58.93 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=19.9
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+..||.||||||||+++..+...+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CceEEEECCCCccHHHHHHHHHHhC
Confidence 4568999999999999877666543
No 184
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.58 E-value=0.071 Score=57.58 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=39.9
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (772)
..+++|.|+||+|||+.+..++..++..+ .+|++.+.-. ..+++..|+..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g-~~Vl~fSlEm-s~~ql~~Rlls 95 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDD-RGVAVFSLEM-SAEQLALRALS 95 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CEEEEEESSS-CHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCCC-CHHHHHHHHHH
Confidence 46999999999999999999998887754 5899887743 45677777753
No 185
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.55 E-value=0.048 Score=59.36 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=31.9
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN 444 (772)
..+++|.||||+|||+.+..++..+.+.+. ++++++...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~-~vlyid~E~ 101 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEH 101 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 458999999999999999999988887654 777766543
No 186
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.53 E-value=0.074 Score=51.72 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=29.8
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV 445 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~ 445 (772)
++..|.|++|+||||++..++..|...+ .+|.++.....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g-~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREG-WRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcC-CeeeEEEeCCC
Confidence 5678999999999999988888776654 47766665443
No 187
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.50 E-value=0.053 Score=58.11 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=27.2
Q ss_pred CHHHHHHHHHhhc----CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 392 NASQVFAVKSVLQ----RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 392 N~sQ~~AV~~aL~----~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+...+.+..++. ...++|.||||||||+++..++..+
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455555655553 2357999999999999987776655
No 188
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.47 E-value=0.086 Score=58.86 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=40.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (772)
..+++|.|+||+|||+.+..++..++...+.+|++.+.-.. .+++..|+..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHH
Confidence 45899999999999999999998887754558998877543 4577777753
No 189
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.45 E-value=0.062 Score=58.36 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=21.5
Q ss_pred CeEEE--EccCCCchhhHHHHHHHHHHH
Q 004121 406 PISLI--QGPPGTGKTVTSAAIVYHMAK 431 (772)
Q Consensus 406 ~l~LI--qGPPGTGKT~tla~iI~~L~~ 431 (772)
+..+| .||||||||+++..++..+..
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 46788 999999999998888776644
No 190
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.43 E-value=0.067 Score=59.94 Aligned_cols=24 Identities=46% Similarity=0.747 Sum_probs=20.1
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.-.|+.||||||||+++..++..+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh
Confidence 358999999999999887777664
No 191
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.42 E-value=0.057 Score=60.41 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=19.5
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.-+||.||||||||+++..++..+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999887766553
No 192
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.41 E-value=0.042 Score=52.89 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=23.9
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
+.+|.||||+||||++..+...+-..+ ..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQG-INNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTT-CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcC-ceEEEE
Confidence 578999999999998888777664333 244444
No 193
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.40 E-value=0.044 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=20.8
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
.+.+|.||||+||||++..+...+-
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999998887776654
No 194
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.38 E-value=0.028 Score=58.70 Aligned_cols=20 Identities=45% Similarity=0.853 Sum_probs=17.1
Q ss_pred EEEEccCCCchhhHHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~ 427 (772)
++|.||||||||+++..++.
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999998776654
No 195
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.36 E-value=0.058 Score=54.09 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=22.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
..+++|.||||+|||+++..++...+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~ 49 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQ 49 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence 45899999999999999988887543
No 196
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.34 E-value=0.064 Score=56.08 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcC---CeEEEEccCCCchhhHHHHHHHHHH
Q 004121 393 ASQVFAVKSVLQR---PISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 393 ~sQ~~AV~~aL~~---~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
+...+.+...+.. +.++|.||||||||+++..++..+.
T Consensus 27 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 27 KETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp THHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 4455556666542 3489999999999998888777664
No 197
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.31 E-value=0.04 Score=59.68 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=19.2
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
-+||.||||||||+++..++..+
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 47899999999999887776654
No 198
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.29 E-value=0.075 Score=55.88 Aligned_cols=22 Identities=41% Similarity=0.598 Sum_probs=18.6
Q ss_pred eEEEEccCCCchhhHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (772)
+.+|.||||+||||++..+...
T Consensus 35 livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999988776654
No 199
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.29 E-value=0.049 Score=60.80 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=28.6
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
..+|.|+||+||||++..++..+.+.+. +|++++
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~-kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGL-KPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHC-CEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEe
Confidence 6789999999999999999998887754 666554
No 200
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.27 E-value=0.043 Score=52.27 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=17.7
Q ss_pred eEEEEccCCCchhhHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~ 427 (772)
+.+|.||||+||||++..+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 678999999999998766654
No 201
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.26 E-value=0.065 Score=60.10 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=18.5
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
+.++|+||||||||+++..+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999987665544
No 202
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.24 E-value=0.053 Score=52.20 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
....+|.||||+||||++..+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999887776554
No 203
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.22 E-value=0.082 Score=52.08 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=26.2
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (772)
..+++|.||||+|||+.+..++. ..+ .+|++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~-~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSG-KKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHC-SEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcC-CcEEEEEC
Confidence 45899999999999999888877 333 46666554
No 204
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.19 E-value=0.083 Score=58.72 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHhhc--CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 391 LNASQVFAVKSVLQ--RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 391 LN~sQ~~AV~~aL~--~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
+...+..++..++. .++++|.||.|+||||++..++..+ ....++|++.
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l-~~~~g~I~~~ 201 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILTV 201 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEEE
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEEe
Confidence 55677777777654 4689999999999999998877654 3334466654
No 205
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.19 E-value=0.06 Score=61.05 Aligned_cols=51 Identities=10% Similarity=0.076 Sum_probs=40.5
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (772)
..+++|.|+||+|||+.+..++..++...+.+||+.+.-.. ..++..|+..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHH
Confidence 46899999999999999999998887763458998887554 4577777743
No 206
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.16 E-value=0.043 Score=51.56 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=17.0
Q ss_pred CeEEEEccCCCchhhHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAI 425 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~i 425 (772)
.+.+|.||||+||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46789999999999987665
No 207
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.15 E-value=0.057 Score=58.94 Aligned_cols=40 Identities=30% Similarity=0.358 Sum_probs=32.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV 445 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~ 445 (772)
..+++|.||||+|||+.+..++..+.+.+. +|++++.-..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~-~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGG-TCAFIDAEHA 113 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEESSCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCC-eEEEEECCCC
Confidence 358999999999999999999988877654 7877776543
No 208
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.12 E-value=0.076 Score=56.84 Aligned_cols=35 Identities=37% Similarity=0.471 Sum_probs=28.7
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
.+.+|.||+|+||||+++.++..+...+ ++|++..
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g-~kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELG-YKVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEe
Confidence 3678899999999999999998877665 5777764
No 209
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.06 E-value=0.2 Score=53.14 Aligned_cols=46 Identities=28% Similarity=0.403 Sum_probs=33.1
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC-c--HHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP-S--NVAVDQLAE 452 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap-S--N~AVD~L~e 452 (772)
.+..|.||.|+||||++..++..+... .++|++.+. + ..|++++..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g~d~~r~~a~~ql~~ 149 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEI 149 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeecccchhHHHHHHH
Confidence 378899999999999999888766554 458887763 2 234566544
No 210
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.03 E-value=0.052 Score=52.42 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=19.8
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+.+|.|+||+||||++..+...+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 367899999999999887776654
No 211
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.99 E-value=0.064 Score=57.30 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=35.9
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcC-----CCcEEEEcCcHH-HHHHHHHHHHhc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQG-----QGQVLVCAPSNV-AVDQLAEKISAT 457 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~-----~~rILV~ApSN~-AVD~L~erL~~~ 457 (772)
..+++|.||||+|||+.+..++....... ..+++.++..+. -.+.+.+++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999988887654431 347777665543 244555554433
No 212
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.98 E-value=0.084 Score=55.76 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHH
Q 004121 393 ASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 393 ~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
+.+.+.+.. +..++.+|.||+|+|||+++.+++..+
T Consensus 19 ~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 19 EKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhc
Confidence 456677777 766899999999999999988777654
No 213
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.93 E-value=0.16 Score=50.88 Aligned_cols=49 Identities=24% Similarity=0.384 Sum_probs=31.4
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHH-HcCCCcEEEEcCcHHHHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMA-KQGQGQVLVCAPSNVAVDQLAEKIS 455 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~-~~~~~rILV~ApSN~AVD~L~erL~ 455 (772)
..++.|.||+|+||||++..++...+ ..+. .+++...... ...+.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~ 79 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE-PGVFVTLEER-ARDLRREMA 79 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCC-CEEEEESSSC-HHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC-eEEEEEccCC-HHHHHHHHH
Confidence 46899999999999999988876544 5444 4444433222 234444443
No 214
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=92.93 E-value=0.25 Score=57.24 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHH-HHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHM-AKQGQGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L-~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (772)
.|++.|+..+...-.....+|.+|.|+|||++++.++... +..+..+|+++++|...+..+.+++..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 5899999988765446789999999999999988665544 444545899999999998888877654
No 215
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.91 E-value=0.097 Score=50.59 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=26.0
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
.+.+|.|+||+||||++..+...+-..+ .++.++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~-~~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEG-YRVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcC-CeEEEe
Confidence 4678999999999999888877765544 356544
No 216
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.91 E-value=0.045 Score=55.80 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=17.6
Q ss_pred EEEEccCCCchhhHHHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~ 428 (772)
.+|.||||||||+++..+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999987766543
No 217
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.82 E-value=0.06 Score=52.71 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.2
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+.+|.|+|||||||++..+...+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999988777665
No 218
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.80 E-value=0.063 Score=51.60 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
..+.+|.||||+||||++..+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999887766554
No 219
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=92.74 E-value=0.27 Score=53.92 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHH-HHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHM-AKQGQGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L-~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (772)
.|++.|+..+...-..+..+|..|-+.|||++++.++... +..++.+|+++|+|...+..+.+++..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 6899999988765456789999999999999988777654 334556899999999988888877654
No 220
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.68 E-value=0.069 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.589 Sum_probs=19.4
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
+..+|.|+||+||||++..+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999877766543
No 221
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.63 E-value=0.27 Score=57.75 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHhh---cCC--eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 390 ELNASQVFAVKSVL---QRP--ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL---~~~--l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
..|..|..|+...+ ..+ ..++.|.+|+|||.+++.++..+ +.++||++++...+.++.+-|...
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~----~~~~lvv~~~~~~A~~l~~el~~~ 80 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV----NKPTLVIAHNKTLAGQLYSEFKEF 80 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----CCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHH
Confidence 45778888887644 333 46789999999999999887654 348999999999999999999876
No 222
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.59 E-value=0.068 Score=51.48 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=19.1
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+.+|.|+|||||||++..+...+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999887766543
No 223
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.57 E-value=0.063 Score=51.01 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=18.4
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.+..|.||||+||||++..+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999987665543
No 224
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.53 E-value=0.1 Score=54.53 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=28.5
Q ss_pred CCCCHHHHHH-HHHhhcC-----CeEEEEccCCCchhhHHHHHHHH
Q 004121 389 PELNASQVFA-VKSVLQR-----PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 389 ~~LN~sQ~~A-V~~aL~~-----~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
...|+.+... +..-+.. .-.++.||||||||..+.+++..
T Consensus 82 qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 82 NGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3578887544 4444432 25899999999999988877654
No 225
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.49 E-value=0.11 Score=53.47 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=25.4
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
.+.+|.|+||+||||++..+...|...+. .++++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~-~~i~~ 38 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNI-DVIVL 38 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCC-EEEEE
Confidence 36789999999999998888777654443 55533
No 226
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.47 E-value=0.066 Score=60.91 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=21.3
Q ss_pred hhcCCeEEEEccCCCchhhHHHHHHHH
Q 004121 402 VLQRPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 402 aL~~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
+......+|.||||||||+++..+...
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGGG
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHHH
Confidence 345778999999999999977666543
No 227
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.45 E-value=0.1 Score=58.64 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhc---CCeEEEEccCCCchhhHHHHHHHHHHH
Q 004121 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (772)
Q Consensus 393 ~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (772)
+...+.+...+. .+..||.||||||||+++-.++..+..
T Consensus 186 ~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 455555655653 456799999999999988777766543
No 228
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.43 E-value=0.21 Score=53.59 Aligned_cols=56 Identities=30% Similarity=0.453 Sum_probs=37.8
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc-Cc--HHHHHHHHHHHHhcCceEE
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA-PS--NVAVDQLAEKISATGLKVV 462 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A-pS--N~AVD~L~erL~~~~~~vv 462 (772)
.+..|.||.|+||||++..++..+...+ ++|++.+ .+ ..|.+++...-...++.++
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~-g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v 188 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHG-FSVVIAASDTFRAGAIEQLEEHAKRIGVKVI 188 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEECCSSTTHHHHHHHHHHHTTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC-CEEEEEeecccccchHHHHHHHHHHcCceEE
Confidence 4788999999999999998887765554 4776654 32 3356666554444454443
No 229
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.43 E-value=0.073 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.639 Sum_probs=18.7
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
+.+|.||||+||||++..+...+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887766543
No 230
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.41 E-value=0.26 Score=53.58 Aligned_cols=54 Identities=28% Similarity=0.386 Sum_probs=36.0
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC-c--HHHHHHHHHHHHhcCceE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP-S--NVAVDQLAEKISATGLKV 461 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap-S--N~AVD~L~erL~~~~~~v 461 (772)
++.|.||.|+||||++..+...+... .++|++.+. + ..|++++...-...++.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~ 215 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEI 215 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEE
T ss_pred EEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEecccccccchhHHHHHHHHhcCeEE
Confidence 67899999999999999888766554 458887763 2 235566544322334444
No 231
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.40 E-value=0.077 Score=52.13 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=20.7
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
....+|.||||+||||++..+...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578999999999999987777655
No 232
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.35 E-value=0.074 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=18.7
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
..+|.|||||||||++..+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57889999999999887776543
No 233
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.30 E-value=0.22 Score=47.85 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=23.3
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV 439 (772)
+.+|.|+|||||||++..+...+-..+- .++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~-~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGY-FVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTC-CEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEE
Confidence 4679999999999988877776644332 4443
No 234
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.29 E-value=0.077 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=19.0
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
+.+|.||||+||||++..+...+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999877766544
No 235
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.26 E-value=0.075 Score=51.40 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=20.2
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
..+.+|.||||+||||++..+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999887776544
No 236
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.21 E-value=0.079 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=17.9
Q ss_pred EEEEccCCCchhhHHHHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+|.||||+||||++..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999887766543
No 237
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.21 E-value=0.077 Score=54.62 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=19.1
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
+.+|.|||||||||++..++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999887776543
No 238
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.18 E-value=0.1 Score=56.24 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=36.0
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHc-----CCCcEEEEcCcHH-HHHHHHHHHHhc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQ-----GQGQVLVCAPSNV-AVDQLAEKISAT 457 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~-----~~~rILV~ApSN~-AVD~L~erL~~~ 457 (772)
..+++|.||||+|||+.+..++...... ...+++.++..+. ..+.+.+++...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 3589999999999999998888764331 2347777666553 345565555443
No 239
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.14 E-value=0.089 Score=49.90 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.5
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
...+|.|+|||||||++..+...|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999877666543
No 240
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.14 E-value=0.064 Score=55.61 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=17.7
Q ss_pred EEEEccCCCchhhHHHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~ 428 (772)
++|.||||||||+++..+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 789999999999987766544
No 241
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.12 E-value=0.081 Score=50.84 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=18.7
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
+.+|.|+||+||||++..+...+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999877666543
No 242
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.11 E-value=0.088 Score=49.91 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=19.3
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+.+|.|+||+||||++..+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999877766544
No 243
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.09 E-value=0.12 Score=57.87 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=39.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~ 456 (772)
..+++|.|+||+|||+.+..++..++..+ .+||+.+.-. ..+++..|+..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g-~~vl~fSlEm-s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLEM-GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT-CEEEEECSSS-CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC-CEEEEEECCC-CHHHHHHHHHH
Confidence 45899999999999999999999988774 5898887653 34566677653
No 244
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.09 E-value=0.082 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.6
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+.+|.||||+||||++..+...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999877766554
No 245
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.08 E-value=0.082 Score=51.29 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
..+.+|.||||+||||++..+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999877766544
No 246
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.95 E-value=0.089 Score=51.09 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=19.0
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
+.+|.|+||+||||++..+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 46899999999999887776554
No 247
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.88 E-value=0.077 Score=60.20 Aligned_cols=23 Identities=43% Similarity=0.687 Sum_probs=18.3
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.-.||.||||||||+++..+...
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999987666443
No 248
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.83 E-value=0.09 Score=51.61 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=21.3
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAK 431 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (772)
.+.+|.|+|||||||++..+...+-.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999998877766543
No 249
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.82 E-value=0.12 Score=52.58 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=29.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
..++++.|.+|+||||++..++..+. .+ .+|+++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g-~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DN-YKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TT-SCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CC-CeEEEEe
Confidence 35788999999999999999998887 54 4787765
No 250
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.81 E-value=0.078 Score=51.24 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=18.5
Q ss_pred CCeEEEEccCCCchhhHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (772)
..+.+|.||||+||||++..+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 34788999999999998766543
No 251
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.81 E-value=0.15 Score=54.54 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=21.6
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAK 431 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~ 431 (772)
.+|+.||||||||+++..++..+..
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCchHHHHHHHHHHHHhC
Confidence 5899999999999998888877753
No 252
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.79 E-value=0.073 Score=52.74 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=17.0
Q ss_pred EEEEccCCCchhhHHHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~ 428 (772)
.+|.|||||||||++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999987766543
No 253
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.73 E-value=0.093 Score=51.54 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.0
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHc
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (772)
.+.+|.|+|||||||++..+...+-..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999988887766443
No 254
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.70 E-value=0.17 Score=54.19 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCeEEEEccCCCchhhHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
....+|.||||||||+.+..++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 356799999999999998888765
No 255
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.68 E-value=0.066 Score=51.29 Aligned_cols=23 Identities=43% Similarity=0.627 Sum_probs=14.6
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.+.+|.|+||+||||++..+...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999987666543
No 256
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.66 E-value=0.099 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.500 Sum_probs=19.3
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+.+|.||||+||||.+..++..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999887776544
No 257
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.66 E-value=0.32 Score=55.03 Aligned_cols=45 Identities=29% Similarity=0.416 Sum_probs=32.4
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE-cCcH--HHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC-APSN--VAVDQLAE 452 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~-ApSN--~AVD~L~e 452 (772)
+++|.||.|+||||++..+...+... .++|++. +.+. .|++++..
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~g~D~~r~aa~eQL~~ 342 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAGDTFRAAAVEQLQV 342 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEECCCTTCHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEecCcccchhhHHHHHH
Confidence 68899999999999998887665544 4588886 3333 34565543
No 258
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.66 E-value=0.13 Score=55.51 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=29.3
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (772)
....|.|+||+||||++..++..+...+. +|+++..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~-kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGH-RVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCC-ceEEEec
Confidence 36789999999999999999988876654 7777654
No 259
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.65 E-value=0.19 Score=50.33 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHH
Q 004121 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.-+..|+.++...-...++.|.||.|+||||++..+.-.
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345678888888766789999999999999987666543
No 260
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.62 E-value=0.1 Score=52.75 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=19.2
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+.+|.||||+||+|.+..++..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 477889999999999877666543
No 261
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.61 E-value=0.11 Score=50.96 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=20.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
..+.+|.||||+||||++..+...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4588999999999999887776554
No 262
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.53 E-value=0.19 Score=48.88 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=27.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
-++..|.||+|+||||++..++..+...+ .+|-++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g-~~v~~i~ 41 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARG-IRPGLIK 41 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccC-CceeEEe
Confidence 36789999999999999988887765544 3554443
No 263
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.52 E-value=0.11 Score=52.11 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=17.1
Q ss_pred EEEEccCCCchhhHHHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~ 428 (772)
.+|.||||+||+|.+..++..
T Consensus 3 Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578899999999987766654
No 264
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.52 E-value=0.097 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=19.5
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+.+|.||||+||||.+..+...+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999887766554
No 265
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.52 E-value=0.31 Score=54.17 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=37.1
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC---cHHHHHHHHHHHHhcCceEEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP---SNVAVDQLAEKISATGLKVVR 463 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap---SN~AVD~L~erL~~~~~~vvR 463 (772)
+.+|.||+|+||||++..++..+...+ ++|++... ...|.+++...-...++.++.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g-~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~ 158 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEeeccccCchhHHHHHHhcccCCccEEe
Confidence 567789999999999999998877664 47766542 244555554332334555544
No 266
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.49 E-value=0.14 Score=55.60 Aligned_cols=34 Identities=32% Similarity=0.565 Sum_probs=26.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEE
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVL 438 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rIL 438 (772)
.++++|.||.|+||||++..++..+-....++|+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~ 156 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHIL 156 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEE
Confidence 5699999999999999998888766544334554
No 267
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.46 E-value=0.11 Score=49.49 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=18.9
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.+.+|.||||+||||++..+...
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 47889999999999987766544
No 268
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.31 E-value=0.41 Score=50.41 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=35.8
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC---cHHHHHHHHHHHHhcCceEE
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP---SNVAVDQLAEKISATGLKVV 462 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap---SN~AVD~L~erL~~~~~~vv 462 (772)
....|.|++|+||||++..++..+...+ ++|++... .+.+..++.......++.++
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~-~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~ 157 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLVAADTQRPAAREQLRLLGEKVGVPVL 157 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTT-CCEEEEECCSSCHHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEecCCcccHhHHHHHHHhcccCCeEEE
Confidence 3566779999999999999988776654 58877653 23444444332223344443
No 269
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.20 E-value=0.16 Score=56.76 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=19.3
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.-.|+.||||||||+++..++..+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHc
Confidence 458999999999999876666543
No 270
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.20 E-value=0.12 Score=50.08 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=18.9
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
...+|.|+|||||||++..+...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999987766554
No 271
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.19 E-value=0.12 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=18.9
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
+.+|.||||+||||.+..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999887776554
No 272
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.19 E-value=0.12 Score=48.66 Aligned_cols=23 Identities=13% Similarity=0.158 Sum_probs=18.3
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
..+|.|+||+||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999877666544
No 273
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.10 E-value=0.16 Score=55.50 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=28.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
.++++|.||+|+||||++..++..+-..+.++|++.-
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 5689999999999999999888766544345776543
No 274
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.08 E-value=0.13 Score=54.58 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=35.7
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHH------------cC---CCcEEEEcCcHH-HHHHHHHHHHhc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAK------------QG---QGQVLVCAPSNV-AVDQLAEKISAT 457 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~------------~~---~~rILV~ApSN~-AVD~L~erL~~~ 457 (772)
..+++|.||||+|||+.+..++..... .+ ..+|+.++..+. -.+.+.+++...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 358999999999999999888875321 12 157877776553 245555555443
No 275
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.05 E-value=0.12 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=18.7
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
..+|.||||+||||++..+...+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999877766543
No 276
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.01 E-value=0.12 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=19.8
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+.+|.|+|||||||++..+...+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999887776654
No 277
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.01 E-value=0.16 Score=53.53 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhc-CCeEEEEccCCCchhhHHHHHHHH
Q 004121 393 ASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 393 ~sQ~~AV~~aL~-~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
+.+.+.+..++. .++.+|.||+|+|||+.+.+++..
T Consensus 18 ~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 18 EEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 455666666664 479999999999999988776654
No 278
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.93 E-value=0.33 Score=48.72 Aligned_cols=40 Identities=20% Similarity=0.447 Sum_probs=28.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE-cCcHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC-APSNV 445 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~-ApSN~ 445 (772)
.-+.+|.||+|+||||.+..+...|-..+. +|.++ -|...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~-~v~~~~~p~~~ 46 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGI-EVQLTREPGGT 46 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTC-CEEEEESSCSS
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCC-CcccccCCCCC
Confidence 346789999999999999888877765543 55433 44433
No 279
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.92 E-value=0.1 Score=52.36 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=18.7
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.+.+|.||||+||||.+..+...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999987666543
No 280
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.91 E-value=0.11 Score=50.92 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=18.0
Q ss_pred eEEEEccCCCchhhHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (772)
+.+|.||||+||||++..+...
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999987666543
No 281
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.83 E-value=0.19 Score=54.86 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=42.6
Q ss_pred cCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCceEEEecc
Q 004121 404 QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCA 466 (772)
Q Consensus 404 ~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~~vvRl~~ 466 (772)
.++.++|.||+|+|||+++..++.++...+ .+|++.=+.+.... +++. .+..+++++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~-~~~~~~D~~~~~~~-~~~~---~gg~~~~~~~ 91 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG-SRVIIIDPEREYKE-MCRK---LGGVWINCTG 91 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEEESSCCSHH-HHHH---TTCEEEETTS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC-CEEEEEeCCcCHHH-HHHH---cCCEEEEECC
Confidence 467899999999999999999998887655 58999888765432 2322 3456666654
No 282
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.79 E-value=0.2 Score=54.11 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=31.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (772)
..+.++.|-+|+||||+++.++..+.+.+. |||++.-
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~-rVLlvD~ 62 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGL-KVVIVST 62 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHSSC-CEEEEEC
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHHCCC-eEEEEeC
Confidence 347888999999999999999999988865 8877764
No 283
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.76 E-value=0.12 Score=50.00 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=17.9
Q ss_pred eEEEEccCCCchhhHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~ 427 (772)
+.+|.||||+||||++..+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 678999999999998877753
No 284
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.74 E-value=0.34 Score=47.55 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=24.3
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
.+..|.||+|+||||++..+...+-..+ ..|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~-~~v~~~ 56 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQG-ISVCVF 56 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcC-CeEEEe
Confidence 3678999999999998877766554333 355544
No 285
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.71 E-value=0.13 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=19.0
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
..+|.|+||+||||.+..+...+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56889999999999887776654
No 286
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.70 E-value=0.17 Score=53.56 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=18.5
Q ss_pred CCeEEEEccCCCchhhHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (772)
....+|.||||||||+++..+..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHHHH
Confidence 45789999999999987655544
No 287
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.67 E-value=0.12 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=19.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
..+.+|.||||+||||++..++..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999987766554
No 288
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.63 E-value=0.2 Score=59.79 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhc---CCeEEEEccCCCchhhHHHHHHHHHH
Q 004121 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 393 ~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
+...+.+..++. ....|+.||||||||+++-.++..+.
T Consensus 186 ~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 555556666653 45689999999999998777766653
No 289
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.56 E-value=0.14 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=18.2
Q ss_pred EEEEccCCCchhhHHHHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+|.||||+||||.+..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999887776554
No 290
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.54 E-value=0.41 Score=49.70 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=27.3
Q ss_pred CeEEEEcc-CCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 406 PISLIQGP-PGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 406 ~l~LIqGP-PGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
...+|.++ ||.|||++++.++..+.+.+. |||++
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~-rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGY-KTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCC-eEEEE
Confidence 35666665 999999999999999988764 87775
No 291
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.51 E-value=0.22 Score=52.77 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=28.2
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (772)
.+..|.||.|+||||++..+...+... .++|++.+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~g~ 138 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAG 138 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEee
Confidence 478899999999999998887665444 458877664
No 292
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.41 E-value=0.27 Score=52.19 Aligned_cols=23 Identities=17% Similarity=-0.064 Sum_probs=19.4
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
+.+|+.||||||||+++..++..
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999988776654
No 293
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.41 E-value=0.13 Score=58.01 Aligned_cols=22 Identities=45% Similarity=0.685 Sum_probs=18.3
Q ss_pred eEEEEccCCCchhhHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (772)
-.+|.||||||||+++..+...
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999987776654
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.41 E-value=0.16 Score=49.90 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHH
Q 004121 391 LNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 391 LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
++..++.+.. .-...+..|.||+|+||||++..+...+-
T Consensus 12 ~~~~~~~~~~-~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 12 VEKVDRQRLL-DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCHHHHHHHH-TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4555554432 11235788999999999998877776654
No 295
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.38 E-value=0.23 Score=52.99 Aligned_cols=36 Identities=39% Similarity=0.558 Sum_probs=30.7
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (772)
.+.++.|-+|+||||+++.++..+.+.+. |||++..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~-rVLlvD~ 50 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGK-KTLVIST 50 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCC-cEEEEeC
Confidence 47788999999999999999999988764 8877654
No 296
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.37 E-value=0.11 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=19.7
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+.+|.||||+||||++..+...+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999887766554
No 297
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.20 E-value=0.17 Score=49.26 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=18.6
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+.|.||+|+||||++..+...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999887666554
No 298
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.17 E-value=0.16 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=18.9
Q ss_pred CCeEEEEccCCCchhhHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (772)
..+++|.||+|+||||++..++.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 45788999999999998766654
No 299
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.15 E-value=0.1 Score=53.48 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=18.3
Q ss_pred eEEEEccCCCchhhHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (772)
+.+|.||||+||||++..+...
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6789999999999987766554
No 300
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.07 E-value=0.22 Score=49.26 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=25.9
Q ss_pred CHHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHH
Q 004121 392 NASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 392 N~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
...++.... .-...+.+|.|+||+||||++..+...+-
T Consensus 13 ~~~~r~~~~-~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 13 TRSERTELR-NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CHHHHHHHH-TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHhhccc-CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455555422 22234778999999999998877776654
No 301
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.01 E-value=0.18 Score=51.20 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
..+.+|.||||+||||++..+...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3588999999999999887766544
No 302
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.97 E-value=0.25 Score=51.11 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=27.5
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
..+++|.||.|+||||++..++..+-....++|++.-
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 5689999999999999988877655333245776653
No 303
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.80 E-value=0.2 Score=48.43 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=19.8
Q ss_pred CCeEEEEccCCCchhhHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
..+++|.||+|+||||++..+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468899999999999987766543
No 304
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.79 E-value=0.24 Score=54.72 Aligned_cols=43 Identities=23% Similarity=0.438 Sum_probs=36.4
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD 448 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD 448 (772)
...++|.||+|+|||+++..++.++++.+. +++|.=+......
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~-~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGD-RMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTC-EEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEeCCCchhH
Confidence 567899999999999998889999888764 8999988876654
No 305
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.73 E-value=0.2 Score=49.65 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=18.5
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
....|.||||+||||++..+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999987766543
No 306
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.71 E-value=0.31 Score=49.32 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=24.3
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
.+.+|.||||+||||.+..+...+-. ...|+.+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK--DYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc--CCCceee
Confidence 46789999999999988777766543 3456544
No 307
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.64 E-value=0.2 Score=48.07 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=17.3
Q ss_pred CCeEEEEccCCCchhhHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAA 424 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~ 424 (772)
..++.|.||+|+||||++..
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 35789999999999999874
No 308
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=89.60 E-value=0.18 Score=57.91 Aligned_cols=25 Identities=40% Similarity=0.725 Sum_probs=20.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
...+++.||||||||+++..+...+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999877666544
No 309
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.60 E-value=0.66 Score=60.61 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=32.9
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV 445 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~ 445 (772)
...++|.||||||||+++.+++....+++ .+++..+..+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G-~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-CcEEEEEcccc
Confidence 45799999999999999999988877765 48888777654
No 310
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.52 E-value=0.19 Score=48.95 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=19.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
..++.|.||+|+||||++..+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457889999999999987766543
No 311
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.51 E-value=0.19 Score=48.94 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=18.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (772)
..+..|.||+|+||||++..+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999998766544
No 312
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=89.48 E-value=0.49 Score=49.84 Aligned_cols=34 Identities=35% Similarity=0.552 Sum_probs=27.5
Q ss_pred CeEEEEcc-CCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 406 PISLIQGP-PGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 406 ~l~LIqGP-PGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
...+|.|+ ||.|||++++.++..|.+.+. |||++
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~-rVLLI 139 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQ-KVLFI 139 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCC-cEEEE
Confidence 45667665 899999999999999887764 77776
No 313
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.47 E-value=0.25 Score=48.88 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=21.4
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
..++.|.||+|+||||++..++..+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45899999999999999887776543
No 314
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.44 E-value=0.56 Score=47.89 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=29.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCC-cEEEEcCcHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQG-QVLVCAPSNV 445 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~-rILV~ApSN~ 445 (772)
..+.+|.||+|+||||.+..+...|-..+.. -++.--|+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t 68 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGT 68 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCC
Confidence 4578899999999999998888877666542 2333344443
No 315
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.28 E-value=0.12 Score=50.89 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=19.8
Q ss_pred eEEEEccCCCchhhHHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
+.+|.||+|+||||.+..++..+-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 568999999999998877776654
No 316
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.28 E-value=0.32 Score=57.83 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhc---CCeEEEEccCCCchhhHHHHHHHHHHH
Q 004121 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (772)
Q Consensus 393 ~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (772)
+.+.+.+...+. ....+|.||||||||+++..++..+..
T Consensus 192 ~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 192 EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 455555666654 356899999999999998877776643
No 317
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.25 E-value=0.36 Score=46.19 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=20.6
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAK 431 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (772)
.+..|.|++|+||||++..+...+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 36789999999999988777665543
No 318
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=89.24 E-value=0.33 Score=50.38 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=41.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCce
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLK 460 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~~~~ 460 (772)
...+||.|+||||||+.+...++.-++++. ++++.++. ...++|..+....|++
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge-~~~~~~~~-e~~~~l~~~~~~~G~d 74 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDN-LVGMFSIS-YPLQLIIRILSRFGVD 74 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTC-EEEEEECS-SCHHHHHHHHHHTTCC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCC-cEEEEEEe-CCHHHHHHHHHHcCCC
Confidence 347899999999999777788888787754 88888884 4556777777766654
No 319
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.14 E-value=0.19 Score=49.26 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=16.9
Q ss_pred eEEEEccCCCchhhHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~ 427 (772)
+..|.||||+||||++..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999998766543
No 320
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.13 E-value=0.52 Score=47.84 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=20.2
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (772)
.-+.+|.||+|+||||.+..+...|-..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3478899999999999998888777554
No 321
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.06 E-value=0.33 Score=56.04 Aligned_cols=37 Identities=35% Similarity=0.561 Sum_probs=31.4
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (772)
..+.++.|.+|+||||+++.++..+.+.+. |||++.-
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~-rVLlvd~ 44 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGK-RVLLVST 44 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCC-cEEEEEC
Confidence 457899999999999999999999998765 7877554
No 322
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.99 E-value=0.16 Score=49.77 Aligned_cols=46 Identities=28% Similarity=0.413 Sum_probs=28.2
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~~ 457 (772)
+.+|.||+|||||+.+..++. . ..+++.+|.....-+++.+|+..+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~----~-~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIG----D-APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHC----S-CSSEEEEECCCC------CHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHh----c-CCCeEEEecCCCCCHHHHHHHHHH
Confidence 368999999999997665543 3 347777776555566777777543
No 323
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.96 E-value=0.13 Score=61.77 Aligned_cols=21 Identities=48% Similarity=0.760 Sum_probs=17.2
Q ss_pred eEEEEccCCCchhhHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~ 427 (772)
=.|+.||||||||+++.+++.
T Consensus 240 GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 379999999999998766553
No 324
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.83 E-value=0.18 Score=57.35 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=17.6
Q ss_pred EEEEccCCCchhhHHHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~ 428 (772)
++|.||||||||+++..+...
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999987666543
No 325
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.74 E-value=0.24 Score=48.90 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=19.9
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
.++.|.||+|+||||++..+...+-
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4778999999999998776665543
No 326
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.74 E-value=0.7 Score=46.31 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=31.9
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEE-EEcCcHHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVL-VCAPSNVAVDQLAEK 453 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rIL-V~ApSN~AVD~L~er 453 (772)
.+.+|.|++|+||||.+..+...|-..+...|. .--|+...+-+....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~ 52 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRS 52 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHH
Confidence 477899999999999998888877666542443 334454444333333
No 327
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.67 E-value=0.28 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=19.2
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
++..|.||||+||||++..+...+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 367899999999999877665543
No 328
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.65 E-value=0.28 Score=56.99 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=24.7
Q ss_pred HHHHHHHhhc-CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 395 QVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 395 Q~~AV~~aL~-~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
-.+.+..++. ...++|.||||||||+++..+...+
T Consensus 49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3444554444 5688999999999999876665543
No 329
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.44 E-value=0.48 Score=57.28 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=27.3
Q ss_pred HHHHHHHHhhc---CCeEEEEccCCCchhhHHHHHHHHHHH
Q 004121 394 SQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (772)
Q Consensus 394 sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (772)
...+.+..++. .+..+|.||||||||+++..++..+..
T Consensus 177 ~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 44444555553 345799999999999988887777654
No 330
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.34 E-value=0.28 Score=48.28 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=17.5
Q ss_pred CeEEEEccCCCchhhHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~ 427 (772)
++.+|.||+|+||||++..++.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999997665543
No 331
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.29 E-value=0.34 Score=57.68 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.3
Q ss_pred eEEEEccCCCchhhHHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
.+++.||||||||+++..+...+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 489999999999998877776664
No 332
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.27 E-value=0.42 Score=47.04 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=25.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
.+..+|.|+||+|||+++..++..+... .++.++
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~--~~~~~i 63 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE--VKIGAM 63 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT--SCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEE
Confidence 3568899999999999988888776332 355544
No 333
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=88.17 E-value=0.41 Score=51.16 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=30.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
+.+.++.|-+|.||||+++.++..+.+.+. |||++.
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~-rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRS-SVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSS-CEEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-eEEEEE
Confidence 467889999999999999999999988764 887764
No 334
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=88.10 E-value=0.36 Score=51.87 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=30.7
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (772)
..+.++.|-+|+||||+++.++..+.+.+. |||++.-
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~-~vllid~ 52 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRR-SVLLLST 52 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSS-CEEEEEC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCC-cEEEEEC
Confidence 458889999999999999999998887764 7766654
No 335
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=88.07 E-value=0.24 Score=50.53 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=18.0
Q ss_pred eEEEEccCCCchhhHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~ 428 (772)
+..|.|||||||||++..+...
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999987766554
No 336
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.05 E-value=0.48 Score=46.84 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=27.6
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
+++..+-+|+|||++++.++..|.+.+. |||++=
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~-rVll~d 37 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGY-RTAGYK 37 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTC-CEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEc
Confidence 4455666999999999999999988764 898863
No 337
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.05 E-value=0.44 Score=51.22 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=27.7
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (772)
.++.|.||||+||||++..++..+... .++|.+.+.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~-~g~v~i~~~ 91 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAA-GHKVAVLAV 91 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhC-CCEEEEEEE
Confidence 478899999999999988877665444 357877653
No 338
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=87.97 E-value=0.74 Score=47.79 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=31.4
Q ss_pred HHHHHHHHhhc---CCeEEEE--ccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 394 SQVFAVKSVLQ---RPISLIQ--GPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 394 sQ~~AV~~aL~---~~l~LIq--GPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
+|...++..+. +-+++.. +-.|+||||+++.++..|.+.+. |||++
T Consensus 21 ~~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~-rVlli 71 (298)
T 2oze_A 21 KILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNL-KVLMI 71 (298)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCC-eEEEE
Confidence 34444444332 3344444 58999999999999998887664 88873
No 339
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.97 E-value=0.46 Score=51.28 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=28.8
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (772)
..+.|.|+||+||||++-.++..+...+ ++|.|.+.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~-~~v~V~~~ 110 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERG-HKLSVLAV 110 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcC-CeEEEEee
Confidence 4678999999999999998887766554 47777764
No 340
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.96 E-value=0.42 Score=48.78 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=31.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS 443 (772)
..+.++.||.|+|||+.+..++......+ .+|++..|.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g-~kvli~kp~ 56 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVIKYA 56 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTT-CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCC-CeEEEEeec
Confidence 35889999999999999998888776655 488888764
No 341
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=87.96 E-value=0.25 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=18.7
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.++.|.||.|+||||++..+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999987766544
No 342
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=87.87 E-value=0.19 Score=58.40 Aligned_cols=20 Identities=40% Similarity=0.438 Sum_probs=16.5
Q ss_pred eEEEEccCCCchhhHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI 426 (772)
..|+.||||||||+++..+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la 348 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFIS 348 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSS
T ss_pred ceEEECCCchHHHHHHHHHH
Confidence 68999999999999765444
No 343
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.78 E-value=0.34 Score=49.93 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=20.7
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.....|.||+|+||||++..+...+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6788999999999999877666544
No 344
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.64 E-value=0.62 Score=53.02 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=33.8
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKI 454 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL 454 (772)
..+++|.||||+|||+.+..++..+...+ .+++...+-+.. ..+..++
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G-~~vi~~~~ee~~-~~l~~~~ 328 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANK-ERAILFAYEESR-AQLLRNA 328 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTT-CCEEEEESSSCH-HHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCC-CCEEEEEEeCCH-HHHHHHH
Confidence 45899999999999999888877665543 467666654432 3555554
No 345
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.43 E-value=0.29 Score=51.02 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=17.8
Q ss_pred eEEEEccCCCchhhHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~ 427 (772)
+.+|.||||+||||.+..+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999998776654
No 346
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=87.38 E-value=0.28 Score=47.92 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=17.2
Q ss_pred eEEEEccCCCchhhHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~ 427 (772)
...|.||+|+||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 467999999999998766654
No 347
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.36 E-value=0.19 Score=60.27 Aligned_cols=51 Identities=29% Similarity=0.440 Sum_probs=30.1
Q ss_pred EEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE----------cCcHHHHHHHHHHHHhcCceEE
Q 004121 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC----------APSNVAVDQLAEKISATGLKVV 462 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~----------ApSN~AVD~L~erL~~~~~~vv 462 (772)
.|+.||||||||.++.+++..+ +...+.+ ..|..++.++.++..+....++
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e~----~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~Ii 574 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANEC----QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVL 574 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHTT----TCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEE
T ss_pred EEEecCCCCCchHHHHHHHHHh----CCceEEeccchhhccccchHHHHHHHHHHHHHHcCCcee
Confidence 6899999999998766655432 2233332 2345556666655544433333
No 348
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.36 E-value=0.39 Score=54.65 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhhcC-CeEEEEccCCCchhhHHHHHHHH
Q 004121 391 LNASQVFAVKSVLQR-PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 391 LN~sQ~~AV~~aL~~-~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
++..+.+-+..++.. ..++|.||.|+||||++..++..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 566667767666654 46899999999999998776543
No 349
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.34 E-value=0.39 Score=52.97 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=21.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
..+++|.||||+|||+.+..++...+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 45899999999999999887765543
No 350
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=87.23 E-value=0.55 Score=47.71 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=28.5
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
++++.+-.|+|||++++.++..|.+.+ .+||++-
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~g-~~VlliD 38 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQLG-HDVTIVD 38 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhCC-CcEEEEE
Confidence 567788999999999999999998875 4888764
No 351
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.12 E-value=0.34 Score=45.60 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
.++.+|.||.|+|||+++-++...|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 56899999999999999887776553
No 352
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.06 E-value=0.3 Score=48.83 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=26.0
Q ss_pred EEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 410 IQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 410 IqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
|.|-.|+||||+++.++..|.+.+ .|||++
T Consensus 5 vs~kGGvGKTt~a~~LA~~la~~g-~~Vlli 34 (254)
T 3kjh_A 5 VAGKGGVGKTTVAAGLIKIMASDY-DKIYAV 34 (254)
T ss_dssp EECSSSHHHHHHHHHHHHHHTTTC-SCEEEE
T ss_pred EecCCCCCHHHHHHHHHHHHHHCC-CeEEEE
Confidence 489999999999999999988776 588776
No 353
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=87.03 E-value=0.7 Score=47.26 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=28.7
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
-+++..+-.|+||||+++.++..|.+.+. +||++=
T Consensus 20 vI~v~s~kGGvGKTT~a~nLA~~la~~G~-~VlliD 54 (262)
T 2ph1_A 20 RIAVMSGKGGVGKSTVTALLAVHYARQGK-KVGILD 54 (262)
T ss_dssp EEEEECSSSCTTHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCC-eEEEEe
Confidence 45667788899999999999999988764 888753
No 354
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=87.02 E-value=0.3 Score=47.94 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=17.0
Q ss_pred CeEEEEccCCCchhhHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI 426 (772)
.+..|.||||+||||++..+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 367899999999999766554
No 355
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=86.95 E-value=0.53 Score=50.51 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=27.3
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
....|.|+||+||||++..++..+...+ .+|.++.
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~-~~v~v~~ 91 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREG-LKVAVIA 91 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcC-CeEEEEe
Confidence 4678899999999999988887766554 4666654
No 356
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=86.93 E-value=0.35 Score=57.48 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=19.2
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+++.||||||||+++..+...+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999887766554
No 357
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.82 E-value=0.38 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.0
Q ss_pred CCeEEEEccCCCchhhHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
....+|.|||||||||++..+...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458899999999999988776653
No 358
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.78 E-value=0.38 Score=49.12 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=19.2
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
-+..|.||||+||||++..+...+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999877666543
No 359
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=86.54 E-value=0.54 Score=47.50 Aligned_cols=33 Identities=39% Similarity=0.595 Sum_probs=27.3
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
+++..+-.|+||||+++.++..|.+.+. +||++
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~-~Vlli 37 (260)
T 3q9l_A 5 IVVTSGKGGVGKTTSSAAIATGLAQKGK-KTVVI 37 (260)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhCCC-cEEEE
Confidence 4566778899999999999999988754 88875
No 360
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=86.51 E-value=0.55 Score=50.78 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=30.5
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHH--HcCCCcEEEEcC
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMA--KQGQGQVLVCAP 442 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~--~~~~~rILV~Ap 442 (772)
..+.++.|-+|+||||+++.++..+. ..+ .+||++.-
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g-~~vllid~ 56 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPN-EQFLLIST 56 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTT-SCEEEEEC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCC-CeEEEEEC
Confidence 46889999999999999999999888 555 47776654
No 361
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=86.44 E-value=0.48 Score=45.96 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=26.4
Q ss_pred EEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
++..+-.|+|||++++.++..|.+.+. +||++-
T Consensus 5 ~v~s~kgG~GKTt~a~~la~~la~~g~-~vlliD 37 (206)
T 4dzz_A 5 SFLNPKGGSGKTTAVINIATALSRSGY-NIAVVD 37 (206)
T ss_dssp EECCSSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCC-eEEEEE
Confidence 444577899999999999999988654 777764
No 362
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=86.44 E-value=0.56 Score=46.73 Aligned_cols=34 Identities=35% Similarity=0.625 Sum_probs=27.5
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
+++..+-+|+|||++++.++..|.+.+. |||++=
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~-~VlliD 38 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGDRGR-KVLAVD 38 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHhcCC-eEEEEe
Confidence 4556778899999999999999988754 887764
No 363
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=86.24 E-value=0.56 Score=50.73 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=31.0
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHH--HcCCCcEEEEcCc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMA--KQGQGQVLVCAPS 443 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~--~~~~~rILV~ApS 443 (772)
..+.++.|-+|.|||++++.++..|. +.+ .|||++..-
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G-~rVLLvD~D 57 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPN-KQFLLISTD 57 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTT-SCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCC-CeEEEEECC
Confidence 45788899999999999999999998 555 488776543
No 364
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=86.23 E-value=0.59 Score=47.69 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=25.9
Q ss_pred EEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 409 LIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 409 LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
.|.|-.|+||||+++.++..|.+.+. |||++
T Consensus 5 ~vs~KGGvGKTT~a~nLA~~la~~G~-~Vlli 35 (269)
T 1cp2_A 5 AIYGKGGIGKSTTTQNLTSGLHAMGK-TIMVV 35 (269)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHTTTC-CEEEE
T ss_pred EEecCCCCcHHHHHHHHHHHHHHCCC-cEEEE
Confidence 44789999999999999999887654 88874
No 365
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=86.17 E-value=0.64 Score=48.18 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=26.6
Q ss_pred EEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
..|.|-.|+||||+++.++..|.+.+. |||++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~-rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGK-KVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCC-eEEEE
Confidence 345789999999999999999988754 88764
No 366
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.15 E-value=0.47 Score=46.66 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.7
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
....|.||+|+||||++..++..+-
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3578999999999999888776654
No 367
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.13 E-value=0.44 Score=46.77 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=19.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
..++.|.||.|+||||++..+...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999988776654
No 368
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.12 E-value=1.5 Score=43.17 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhc---CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEE--EcCcHHHHHHHHHHHHhcCceEEEe
Q 004121 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV--CAPSNVAVDQLAEKISATGLKVVRL 464 (772)
Q Consensus 393 ~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV--~ApSN~AVD~L~erL~~~~~~vvRl 464 (772)
+.|.+.++..+. ....+|.|.+|+|||+++..++..+... .++.+ ..+. ..+|. .++...+.+++.+
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~--~~~~~i~~d~~-~~~d~--~~~~~~~~~~~~~ 94 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK--YKIACIAGDVI-AKFDA--ERMEKHGAKVVPL 94 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT--CCEEEEEEETT-THHHH--HHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEECCCC-CCccH--HHHHhcCCcEEEe
Confidence 344444444432 2456788999999999998888776443 34433 3332 33443 2344444555444
No 369
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.10 E-value=0.39 Score=58.07 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=19.7
Q ss_pred eEEEEccCCCchhhHHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
.++|.||||||||+++..+...+.
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999998776666554
No 370
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=86.07 E-value=0.63 Score=48.71 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=27.3
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
...|.|-.|+||||+++.++..|.+.+. +||++
T Consensus 43 vI~v~~KGGvGKTT~a~nLA~~La~~G~-~Vlli 75 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQI 75 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCC-eEEEE
Confidence 4445599999999999999999988764 87766
No 371
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.01 E-value=0.39 Score=45.94 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=20.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.++.+|.||.|+|||+++-++...|
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999887766543
No 372
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=85.96 E-value=0.43 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=18.3
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.+..|.||.|+||||++..+...
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999987665543
No 373
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=85.95 E-value=0.62 Score=53.33 Aligned_cols=36 Identities=31% Similarity=0.329 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhc-----CCeEEEEccCCCchhhHHHHHHHH
Q 004121 393 ASQVFAVKSVLQ-----RPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 393 ~sQ~~AV~~aL~-----~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
+...+.+...+. .++++|+||+|.|||+.+.+++..
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 456666777764 358899999999999998877643
No 374
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.93 E-value=0.46 Score=46.84 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=18.4
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
-+..|.|++||||||++..+...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999987766554
No 375
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.87 E-value=0.35 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.2
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.+.+|.||+|+|||+++..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999988777654
No 376
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=85.78 E-value=0.4 Score=46.41 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=17.0
Q ss_pred eEEEEccCCCchhhHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~ 427 (772)
+..|.|+||+||||++..+..
T Consensus 10 ~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998765543
No 377
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=85.65 E-value=0.67 Score=45.86 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=26.6
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
++++.+-.|+||||+++.++..|.+.+ +||++
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g--~Vlli 34 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG--ETLLI 34 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS--CEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC--CEEEE
Confidence 456678899999999999999888765 88774
No 378
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=85.28 E-value=0.65 Score=46.41 Aligned_cols=35 Identities=14% Similarity=0.353 Sum_probs=27.8
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
+++..+-.|+||||+++.++..|.+..+.|||++=
T Consensus 7 I~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 7 FGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred EEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 45667779999999999999998887234888763
No 379
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.22 E-value=0.75 Score=49.15 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=22.9
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHc--CCCcEEEEc
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCA 441 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~--~~~rILV~A 441 (772)
+..|.||+|+||||++..+.. ++.. ..++|.++.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~-ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKA-LLSRWPDHPNVEVIT 129 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHTTSTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-HhcccCCCCeEEEEe
Confidence 678999999999998766544 4432 223555544
No 380
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=84.98 E-value=0.4 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=14.6
Q ss_pred CCeEEEEccCCCchhhHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI 426 (772)
..++.|.||+|+||||++..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999877665
No 381
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.93 E-value=0.46 Score=47.46 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=18.8
Q ss_pred CCeEEEEccCCCchhhHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (772)
....+|.||+|+|||+++.+++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34679999999999998776654
No 382
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=84.90 E-value=0.56 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=19.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (772)
..+.+|.||+|+||||++..++.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 56889999999999998776654
No 383
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=84.87 E-value=1.2 Score=49.01 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=29.2
Q ss_pred HHHHHHHhhc---CCeEEEEccCCCchhhHHHHHHHHHHHc
Q 004121 395 QVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (772)
Q Consensus 395 Q~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (772)
-.+||...+. ..-.+|.||||||||+++..++.++.+.
T Consensus 162 GiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 162 STRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp HHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 3466666543 3567999999999999998888887654
No 384
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=84.85 E-value=1.2 Score=49.00 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhc---CCeEEEEccCCCchhhHHHHHHHHHHHcCCC-c--EEEEcCcHHHHHHHHHH
Q 004121 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQG-Q--VLVCAPSNVAVDQLAEK 453 (772)
Q Consensus 393 ~sQ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~-r--ILV~ApSN~AVD~L~er 453 (772)
.--.+||...+. ..-.+|.||||+|||+++..++..+.+.+.. . ++.+.....-|.++.+.
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~ 225 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 225 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTT
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHH
Confidence 455667776653 4578999999999999998888777654322 2 23445555555555443
No 385
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=84.85 E-value=0.49 Score=46.81 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=22.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~ 431 (772)
.++.+|.||.|+|||+++-++.+.|..
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 579999999999999998877766543
No 386
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=84.84 E-value=0.55 Score=49.83 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=25.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
...+.|.||+|+||||.+..+...+ .++|++..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v 158 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFA 158 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGG
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEe
Confidence 4688999999999999887766554 35786543
No 387
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.73 E-value=0.58 Score=60.31 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=34.7
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD 448 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD 448 (772)
..+++|.||||+|||+.+..++....+.+ .++++.+.-...-.
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~G-~~vlyis~E~s~~~ 425 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEHALDP 425 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEECTTSCCCH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEccCchHH
Confidence 45899999999999999999998888765 48888777655433
No 388
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=84.66 E-value=0.47 Score=46.87 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=16.7
Q ss_pred eEEEEccCCCchhhHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI 426 (772)
+..|.|++|+||||++..+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999776554
No 389
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.58 E-value=1.2 Score=50.69 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=28.8
Q ss_pred CCeEEEEccCCCchhhHHHHHH-HHHHHcCCCcEEEEcCc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIV-YHMAKQGQGQVLVCAPS 443 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI-~~L~~~~~~rILV~ApS 443 (772)
..+++|.||+|+||||.+..++ .-+...+.+.|.+....
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 4689999999999999988763 45555455567776543
No 390
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=84.50 E-value=1.1 Score=46.76 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=26.0
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
+.+..+-||.|||++++.++..+.+.+. |||++
T Consensus 95 I~vts~kgG~GKTtva~nLA~~lA~~G~-rVLLI 127 (286)
T 3la6_A 95 LMMTGVSPSIGMTFVCANLAAVISQTNK-RVLLI 127 (286)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHHTTTC-CEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhCCC-CEEEE
Confidence 3444556999999999999998887754 88776
No 391
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=84.01 E-value=1.3 Score=44.76 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=30.0
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHH-cCCCcEEE-E-cCcHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAK-QGQGQVLV-C-APSNVAVDQ 449 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~-~~~~rILV-~-ApSN~AVD~ 449 (772)
.+.+|.|++|+||||.+..+...|-. .+. +|.+ + -|....+-+
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g~-~v~~~treP~~t~~g~ 67 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSEIYGV-NNVVLTREPGGTLLNE 67 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCG-GGEEEEESSCSSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhccCc-eeeEeeeCCCCChHHH
Confidence 36788999999999999888887766 553 5554 3 454444433
No 392
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.98 E-value=0.83 Score=58.88 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=33.5
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~A 446 (772)
..+++|.||||+|||+.+..++..+.+.+ .+|++.+.-...
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g-~~VlyiS~Ees~ 772 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEHAL 772 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEECTTSCC
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcC-CCeEEEeccchH
Confidence 35899999999999999999998888765 488887765543
No 393
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.74 E-value=0.51 Score=49.21 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=17.4
Q ss_pred eEEEEccCCCchhhHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI 426 (772)
+..|.|+||+||||++..+.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999887665
No 394
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=83.29 E-value=0.56 Score=50.57 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.2
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+.+|.||+|+|||+++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 378899999999999888777654
No 395
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=83.14 E-value=0.63 Score=47.53 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=19.2
Q ss_pred CCeEEEEccCCCchhhHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
..+..|.||+|+||||++..+...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 357889999999999987666543
No 396
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=83.13 E-value=0.69 Score=46.83 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=18.6
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
+..|.||.|+||||++..+...+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999887665444
No 397
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=83.04 E-value=0.61 Score=50.96 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=29.7
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (772)
.+.++.|..|+||||+++.++..+.+.+. +||++..
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~-~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGK-RVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCC-CeEEEeC
Confidence 35688999999999999999999988765 7766554
No 398
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=83.02 E-value=0.59 Score=47.58 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=17.5
Q ss_pred EEEEccCCCchhhHHHHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI~~L 429 (772)
.-|.||||+||||.+..++..+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 4589999999999887766544
No 399
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=82.94 E-value=0.4 Score=53.02 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=18.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (772)
..+.+|.||||+||||++..++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999998766553
No 400
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.93 E-value=0.56 Score=50.60 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
..++.|.||||+|||+.+..++..+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999988777654
No 401
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=82.89 E-value=0.72 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=19.0
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
....|.|+||+||||++..+...+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999877665443
No 402
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=82.60 E-value=2.1 Score=42.16 Aligned_cols=40 Identities=20% Similarity=0.416 Sum_probs=28.3
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE-cCcHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC-APSNVAV 447 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~-ApSN~AV 447 (772)
+..|-|+.|+||||.+..+...|-+.+. +|+++ =|.....
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~-~v~~treP~~t~~ 42 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGK-KVILKREPGGTET 42 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEESSCSSHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEECCCCCcH
Confidence 3568899999999998888877777664 55544 3444333
No 403
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.52 E-value=0.4 Score=57.69 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=19.1
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
...++.||||||||+++..++..+
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred ceeEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999877666544
No 404
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=82.40 E-value=0.75 Score=48.35 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=19.8
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
.+..|.||+|+||||++..+...+-
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3678999999999998776665553
No 405
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=82.30 E-value=1.1 Score=48.99 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHhhc--------C---CeEEEEccCCCchhhHHHHHHHHHHH-----cCCCcEEEEc
Q 004121 391 LNASQVFAVKSVLQ--------R---PISLIQGPPGTGKTVTSAAIVYHMAK-----QGQGQVLVCA 441 (772)
Q Consensus 391 LN~sQ~~AV~~aL~--------~---~l~LIqGPPGTGKT~tla~iI~~L~~-----~~~~rILV~A 441 (772)
++.+|...+...+. . -++++.|-.|+||||+++.++..|.. ..+.|||++=
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD 150 (398)
T 3ez2_A 84 MSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID 150 (398)
T ss_dssp BCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEE
T ss_pred CCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 46778887776642 1 14666789999999999999998885 2234877653
No 406
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=82.23 E-value=0.76 Score=45.21 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=19.9
Q ss_pred CCeEEEEccCCCchhhHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
..++.|.||.|+||||++..+...
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 568999999999999987766543
No 407
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=82.15 E-value=0.96 Score=49.03 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=28.2
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
+++..|-.|+||||+++.++..|.+.+. +||++-
T Consensus 146 Iav~s~KGGvGKTT~a~nLA~~La~~g~-rVlliD 179 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAAACAIAHANMGK-KVFYLN 179 (373)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHHTC-CEEEEE
T ss_pred EEEECCCCCChHHHHHHHHHHHHHhCCC-CEEEEE
Confidence 5566678999999999999999988764 887765
No 408
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.15 E-value=0.49 Score=56.94 Aligned_cols=22 Identities=45% Similarity=0.712 Sum_probs=17.6
Q ss_pred CeEEEEccCCCchhhHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~ 427 (772)
...+|.||||||||+++..+..
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999987665543
No 409
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=82.05 E-value=0.75 Score=45.90 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=23.4
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEE
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV 439 (772)
..++.|.||.|+||||++..+...+ + +.|.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~---p-G~i~~ 53 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF---P-NYFYF 53 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS---T-TTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC---C-CcEEE
Confidence 4588999999999999887666533 2 46665
No 410
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=82.00 E-value=0.75 Score=49.88 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=18.8
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
..+|.||||+||||++..++..+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 47899999999999887666544
No 411
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.99 E-value=0.55 Score=50.12 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=20.5
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.++.+|.||.|+|||+++..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3578899999999999888776543
No 412
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=81.99 E-value=0.69 Score=45.59 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=17.3
Q ss_pred eEEEEccCCCchhhHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~ 427 (772)
+..|.|+||+|||+++..+..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999998765544
No 413
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=81.72 E-value=0.72 Score=46.94 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=26.7
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
+++..+-.|+||||+++.++..|.+.+ .|||++
T Consensus 9 I~v~s~kGGvGKTt~a~~LA~~la~~g-~~Vlli 41 (257)
T 1wcv_1 9 IALANQKGGVGKTTTAINLAAYLARLG-KRVLLV 41 (257)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCC-CCEEEE
Confidence 344457889999999999999998875 488876
No 414
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=81.65 E-value=0.82 Score=45.99 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.4
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+.+|.|++|+||||.+..+...|
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 477899999999999988877665
No 415
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=81.44 E-value=0.79 Score=46.77 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=26.3
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
+++..+-.|+||||+++.++..|. .+ .|||++
T Consensus 30 I~v~s~kGGvGKTT~a~~LA~~la-~g-~~Vlli 61 (267)
T 3k9g_A 30 ITIASIKGGVGKSTSAIILATLLS-KN-NKVLLI 61 (267)
T ss_dssp EEECCSSSSSCHHHHHHHHHHHHT-TT-SCEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHH-CC-CCEEEE
Confidence 455678889999999999999888 65 588776
No 416
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=81.33 E-value=0.7 Score=48.49 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=16.8
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+..|.||+|+||||++..+...+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999887776554
No 417
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=81.18 E-value=0.52 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=19.3
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.+.+|.||.|+|||+++..++..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999988776654
No 418
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=81.17 E-value=1 Score=46.74 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=26.7
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
+++..+-.|+||||+++.++..|.+.+. +||++
T Consensus 7 I~v~s~KGGvGKTT~a~nLA~~La~~G~-~Vlli 39 (286)
T 2xj4_A 7 IVVGNEKGGAGKSTIAVHLVTALLYGGA-KVAVI 39 (286)
T ss_dssp EEECCSSSCTTHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHCCC-cEEEE
Confidence 4555678899999999999999988764 77764
No 419
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=81.10 E-value=0.69 Score=46.59 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=18.8
Q ss_pred eEEEEccCCCchhhHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L 429 (772)
+.+|.|++|+||||.+..+...+
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57899999999999877766554
No 420
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=80.99 E-value=0.88 Score=45.71 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=19.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~ 427 (772)
..++.|.||.|+||||++..+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46889999999999998776554
No 421
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.94 E-value=1.2 Score=58.39 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=32.9
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~A 446 (772)
..+++|.||||+|||+.+..++....+.+ .++++.+.-...
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~G-~~vlyis~E~s~ 423 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEHAL 423 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEECTTSCC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEEcCCCH
Confidence 45899999999999999999998887764 477777665533
No 422
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=80.81 E-value=0.91 Score=48.20 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=19.0
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.++.|.||+|+||||++..+...+
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhc
Confidence 367899999999999876655443
No 423
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=80.76 E-value=0.71 Score=49.18 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=19.6
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.+.+|.||+|+|||+++..++..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46789999999999988877655
No 424
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=80.68 E-value=0.69 Score=50.02 Aligned_cols=34 Identities=35% Similarity=0.464 Sum_probs=27.6
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
+++..+-.|+||||+++.++..|.+.+. |||++=
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA~~G~-rVLlID 37 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFALQGK-RVLYVD 37 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhCCC-cEEEEE
Confidence 3456688999999999999999988654 888763
No 425
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=80.57 E-value=1.2 Score=52.54 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh----cCceEEEecc
Q 004121 393 ASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA----TGLKVVRLCA 466 (772)
Q Consensus 393 ~sQ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~~----~~~~vvRl~~ 466 (772)
+-|.-......... +.+=-.|+|||.+++-.++ |-...+..|.|+|+|..-+..-++.+.. .|+.+.-+.+
T Consensus 78 dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~-lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~ 152 (822)
T 3jux_A 78 DVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIY-LNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINS 152 (822)
T ss_dssp HHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHH-HHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred HHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHH-HHHhcCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcC
Confidence 55665554333222 5677799999998654443 3233345899999999887776665543 4676655543
No 426
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=80.50 E-value=1.5 Score=46.49 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=31.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
..+..|.|==|.|||||.+.+...|.+.+. |||++=
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk-kVllID 83 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQIG 83 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHCCC-eEEEEe
Confidence 457888999999999999999999999875 888763
No 427
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=80.33 E-value=0.91 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.6
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+.++.|+||+||||++..++..|
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 367889999999999988887765
No 428
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=80.29 E-value=0.94 Score=47.79 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=23.3
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHH--cCCCcEEEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAK--QGQGQVLVC 440 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~--~~~~rILV~ 440 (772)
+..|.||+|+||||++..+... +. -..+.|.++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~-l~~~~~~G~i~vi 116 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL-LSRWPEHRRVELI 116 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH-HTTSTTCCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HhhCCCCCeEEEE
Confidence 6789999999999987665544 33 223467664
No 429
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=79.80 E-value=2.4 Score=42.04 Aligned_cols=45 Identities=22% Similarity=0.413 Sum_probs=29.0
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE-cCcHHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC-APSNVAVDQLAEK 453 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~-ApSN~AVD~L~er 453 (772)
+..|-|+.|+||||.+..+...|. .+ .+|+.+ =|+....-+...+
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~-~~-~~v~~~~eP~~t~~g~~ir~ 49 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV-KD-YDVIMTREPGGVPTGEEIRK 49 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-TT-SCEEEEESSTTCHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-CC-CCEEEeeCCCCChHHHHHHH
Confidence 677899999999998877776663 33 355554 3444443333333
No 430
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=79.79 E-value=0.9 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.5
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+.+|.||+|+|||+++..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 467899999999999988877664
No 431
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=79.59 E-value=1.6 Score=50.76 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHh---hcCCeEEEEccCCCchhhHHHHHHHHHHHcC
Q 004121 390 ELNASQVFAVKSV---LQRPISLIQGPPGTGKTVTSAAIVYHMAKQG 433 (772)
Q Consensus 390 ~LN~sQ~~AV~~a---L~~~l~LIqGPPGTGKT~tla~iI~~L~~~~ 433 (772)
..+..++.+...- ....+.+|.|+||+||||++..+...|...+
T Consensus 34 ~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G 80 (630)
T 1x6v_B 34 HVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHG 80 (630)
T ss_dssp CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 3566666654321 1123678999999999999888887775544
No 432
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=78.51 E-value=1.3 Score=59.76 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=21.8
Q ss_pred HHHHhhc-CCeEEEEccCCCchhhHHHHHHH
Q 004121 398 AVKSVLQ-RPISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 398 AV~~aL~-~~l~LIqGPPGTGKT~tla~iI~ 427 (772)
.+..++. ....|+.||||||||+++..++.
T Consensus 1259 ll~~~l~~~~~vLL~GPpGtGKT~la~~~l~ 1289 (2695)
T 4akg_A 1259 IFYDLLNSKRGIILCGPPGSGKTMIMNNALR 1289 (2695)
T ss_dssp HHHHHHHHTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHCCCeEEEECCCCCCHHHHHHHHHh
Confidence 3444443 56789999999999998755543
No 433
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=78.45 E-value=1 Score=47.80 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=23.5
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcC
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~Ap 442 (772)
++++|.|+-|+||||++..+.... ...+|.|+.+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~---~~~~~aVi~~ 38 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ---HGYKIAVIEN 38 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC---CCCCEEEECS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc---CCCcEEEEEe
Confidence 578999999999999887665432 2235555444
No 434
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=78.30 E-value=1.2 Score=44.05 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=20.5
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
..+..|.||+|||||++...++..|
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 5678899999999999877666554
No 435
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=78.23 E-value=1.6 Score=47.08 Aligned_cols=47 Identities=17% Similarity=0.082 Sum_probs=30.6
Q ss_pred HHHHHHhhc---CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCc
Q 004121 396 VFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (772)
Q Consensus 396 ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApS 443 (772)
..||...+. .....|.||+|+||||++..++..+ +-..+.|.++...
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~-~~~~g~i~~~G~~ 108 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA-SADIIVLALIGER 108 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESCC
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC-CCCEEEEEEeccc
Confidence 356666653 4689999999999999976666543 2222345555544
No 436
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=78.15 E-value=1.1 Score=43.70 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=18.5
Q ss_pred CeEEEEccCCCchhhHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~ 427 (772)
.-.+|.|++|+|||+++.+++.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999998877765
No 437
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=77.81 E-value=1.6 Score=48.93 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=36.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHc-CCCcE-EEEcCcHHHHHHHHHHHHhc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQ-GQGQV-LVCAPSNVAVDQLAEKISAT 457 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~-~~~rI-LV~ApSN~AVD~L~erL~~~ 457 (772)
..-.+|.||||+|||+++..++...... +.-.| ..+..-..-+.++.+.+...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~ 205 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDS 205 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhc
Confidence 5678999999999999999988876654 22222 23444555666666666543
No 438
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=77.74 E-value=1.9 Score=49.66 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=30.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
..+.++.|.+|+|||++++.++..+.+.+. +||++
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~-~vllv 361 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGF-DVHLT 361 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCC-cEEEE
Confidence 347788999999999999999999988765 88776
No 439
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=77.53 E-value=1.3 Score=47.42 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.2
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
.++.+|.||.|+|||+++-++...+.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999877766654
No 440
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=77.21 E-value=1.8 Score=37.93 Aligned_cols=25 Identities=24% Similarity=0.836 Sum_probs=19.9
Q ss_pred ccccccCCC-CCCceEecCCCccCeeeeC
Q 004121 143 HACRYCGVS-NPACVVRCNVPSCRKWFCN 170 (772)
Q Consensus 143 ~~c~ycg~~-~~~~~~~c~~~~c~~wfcn 170 (772)
-.| +||.. +..-+|.|.. |++||=-
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~--C~~w~H~ 54 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDK--CSVWQHI 54 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTT--TCBEEET
T ss_pred EEe-ECCCccCCCcEEEcCC--CCCcCcC
Confidence 468 78875 4678999999 9999943
No 441
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=77.08 E-value=1.3 Score=47.97 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=21.7
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
.++.+|.||.|+|||+.+-++.+.+.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999998877766654
No 442
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=76.79 E-value=4.5 Score=45.47 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=44.0
Q ss_pred HHHHHHhhc---CCeEEEEccCCCchhhHHHHHHHHHHHcCCCc--EEEEcCcHHHHHHHHHHHHhcC
Q 004121 396 VFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQ--VLVCAPSNVAVDQLAEKISATG 458 (772)
Q Consensus 396 ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~r--ILV~ApSN~AVD~L~erL~~~~ 458 (772)
.+||...+. .+-..|.||+|+|||+++..++.+..+....- +..|..-..-|.++.+.+.+.+
T Consensus 141 ir~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~ 208 (482)
T 2ck3_D 141 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG 208 (482)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHT
T ss_pred eEEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhcc
Confidence 356665543 45679999999999999999998875542212 2345666777788888876653
No 443
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=76.51 E-value=0.95 Score=43.71 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=21.2
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHc
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~ 432 (772)
..+.|.||.|+||||++..++..+-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 467899999999999887777665443
No 444
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=76.49 E-value=1.2 Score=48.06 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
..+++|.||.|+||||++..++..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 568999999999999988776643
No 445
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=76.32 E-value=0.52 Score=48.23 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=18.2
Q ss_pred CeEEEEccCCCchhhHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
.+.+|.|++|+||||.+..+...
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36789999999999987655543
No 446
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=76.22 E-value=2 Score=45.12 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEE
Q 004121 396 VFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (772)
Q Consensus 396 ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV 439 (772)
.+.+...+...+..|.||+|+||||++-.+. +.....+.|.+
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~--~~~~~~G~i~~ 197 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT--GEELRTQEVSE 197 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH--SCCCCCSCC--
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH--HhhCccccccc
Confidence 4556666777899999999999999887766 33332334543
No 447
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=76.08 E-value=1.5 Score=41.78 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=24.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEE
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV 439 (772)
..++.|.||-|+||||.+..++..+ - ..+.|.+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l-~-~~G~V~~ 65 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI-G-HQGNVKS 65 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT-T-CCSCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC-C-CCCeEEE
Confidence 3478899999999999888777665 3 2345543
No 448
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=76.07 E-value=1 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~ 428 (772)
...++|.||.|+||||++..++..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999987766543
No 449
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=75.83 E-value=1.1 Score=48.84 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHhhc---------C--CeEEEEccCCCchhhHHHHHHHHHH------HcCCCcEEEE
Q 004121 391 LNASQVFAVKSVLQ---------R--PISLIQGPPGTGKTVTSAAIVYHMA------KQGQGQVLVC 440 (772)
Q Consensus 391 LN~sQ~~AV~~aL~---------~--~l~LIqGPPGTGKT~tla~iI~~L~------~~~~~rILV~ 440 (772)
++..|...+..... . -++++.|-.|+||||+++.++..|. +.+ .|||++
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g-~rVlli 152 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHD-LRILVI 152 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGC-CCEEEE
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCC-CeEEEE
Confidence 57888888876531 1 2566778999999999999999887 344 477765
No 450
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=75.59 E-value=2.1 Score=46.40 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=22.5
Q ss_pred HHHHHhhcCCeEEEEccCCCchhhHHHHHH
Q 004121 397 FAVKSVLQRPISLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 397 ~AV~~aL~~~l~LIqGPPGTGKT~tla~iI 426 (772)
+.+...+....+.|.||+|+||||++-.++
T Consensus 207 ~~L~~~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 207 KPLEEALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHHHHHHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEECCCCccHHHHHHHHh
Confidence 334444556789999999999999875554
No 451
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=74.74 E-value=1.7 Score=48.71 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.5
Q ss_pred eEEEEccCCCchhhHHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
+.++.|.||+||||++..++..+-
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 678899999999999888876654
No 452
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=74.60 E-value=1.6 Score=39.81 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.8
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|++|+|||+.+..++
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5789999999999766554
No 453
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=74.43 E-value=2.3 Score=44.67 Aligned_cols=31 Identities=32% Similarity=0.394 Sum_probs=23.3
Q ss_pred HHHHHHhhcCCeEEEEccCCCchhhHHHHHH
Q 004121 396 VFAVKSVLQRPISLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 396 ~~AV~~aL~~~l~LIqGPPGTGKT~tla~iI 426 (772)
.+.+...+...+..|.||+|+||||++-.+.
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHHHHhc
Confidence 3444555667899999999999998765544
No 454
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=73.95 E-value=1.7 Score=41.99 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.8
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|++|+|||+++..++
T Consensus 8 v~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 5789999999999766554
No 455
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=73.77 E-value=1.8 Score=42.26 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=17.7
Q ss_pred CeEEEEccCCCchhhHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~ 427 (772)
.-.+|.|+||+|||+.+..++.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999998766553
No 456
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=73.69 E-value=3 Score=47.50 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhc------CCeEEEEccCCCchhhHHHHHHH----HHHHcCCCcEEEEcCcHH--HHHHHHHHHH
Q 004121 393 ASQVFAVKSVLQ------RPISLIQGPPGTGKTVTSAAIVY----HMAKQGQGQVLVCAPSNV--AVDQLAEKIS 455 (772)
Q Consensus 393 ~sQ~~AV~~aL~------~~l~LIqGPPGTGKT~tla~iI~----~L~~~~~~rILV~ApSN~--AVD~L~erL~ 455 (772)
+...+.+...|. ..+..|.|++|.|||+.+..+.. .+...-...+.|+..... .+..+...+.
T Consensus 134 ~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 134 EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp HHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHH
Confidence 345555555552 25788999999999997765553 122222334555544331 3444444443
No 457
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=73.47 E-value=2.8 Score=48.29 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=24.2
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
+.+|.|+||+||||++..+...|-..+..++.++
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~l 431 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLL 431 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEE
Confidence 5788999999999988777776655442344433
No 458
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=73.16 E-value=3 Score=47.78 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=25.0
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
+.++.|+||+||||++..+...+-..+ .++.++.
T Consensus 374 ~I~l~G~~GsGKSTia~~La~~L~~~G-~~~~~ld 407 (546)
T 2gks_A 374 CVWLTGLPCAGKSTIAEILATMLQARG-RKVTLLD 407 (546)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEC
T ss_pred EEEccCCCCCCHHHHHHHHHHHhhhcC-CeEEEEC
Confidence 567899999999998887777665554 3555543
No 459
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=72.91 E-value=1.7 Score=41.71 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=16.4
Q ss_pred eEEEEccCCCchhhHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI 426 (772)
..+|.|++|+|||+.+..++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 46899999999999876554
No 460
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=72.84 E-value=2.1 Score=47.29 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=25.7
Q ss_pred CHHHHHHHHHhhc-CCeEEEEccCCCchhhHHHHHHH
Q 004121 392 NASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 392 N~sQ~~AV~~aL~-~~l~LIqGPPGTGKT~tla~iI~ 427 (772)
+...++++..+.. .+.+.|.||+|+||||++-.+.-
T Consensus 55 ~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 55 NSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred chhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3445566666554 45788999999999998766553
No 461
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=72.40 E-value=2 Score=39.46 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=15.9
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|++|+|||+.+..++
T Consensus 8 i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999776654
No 462
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=72.24 E-value=3.6 Score=46.41 Aligned_cols=62 Identities=19% Similarity=0.142 Sum_probs=42.2
Q ss_pred HHHHHhhc---CCeEEEEccCCCchhhHHHHHHHHHHHcC-CCcE-EEEcCcHHHHHHHHHHHHhcC
Q 004121 397 FAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQG-QGQV-LVCAPSNVAVDQLAEKISATG 458 (772)
Q Consensus 397 ~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~~~-~~rI-LV~ApSN~AVD~L~erL~~~~ 458 (772)
+||...+. .+-..|.|++|+|||+++..++.+..+.. .-.| ..|..-..-+.++.+.+.+.+
T Consensus 154 rvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~ 220 (498)
T 1fx0_B 154 KVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESG 220 (498)
T ss_dssp TTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTT
T ss_pred eEeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhccc
Confidence 34544432 45679999999999999999998876542 2222 344556667777888877653
No 463
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=72.22 E-value=2 Score=39.19 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=15.5
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999765544
No 464
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=72.15 E-value=3.5 Score=41.54 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=27.1
Q ss_pred eEEEEcc-CCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 407 ISLIQGP-PGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 407 l~LIqGP-PGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
..+|.|. +|.|||++.+.++..|.+++. +|...=
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~-~V~~~K 40 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNI-KSLCLK 40 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTC-CEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCC-eeEEec
Confidence 3577887 999999999999999888764 666543
No 465
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=72.08 E-value=2 Score=40.02 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.3
Q ss_pred eEEEEccCCCchhhHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI 426 (772)
..+|.|+||+|||+.+..++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999766554
No 466
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=71.61 E-value=2 Score=39.03 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=15.7
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|++|+|||+.+..++
T Consensus 6 i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999865554
No 467
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=71.55 E-value=2.1 Score=43.53 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=23.3
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
.++.|.||.|+||||.+..+. -++.-..+.|.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~ 58 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA-GIVKPDRGEVRLN 58 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEEC
Confidence 578899999999999776544 3333233467664
No 468
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=71.47 E-value=2.1 Score=40.71 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=17.0
Q ss_pred CeEEEEccCCCchhhHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI 426 (772)
.-.+|.|++|+|||+.+..+.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 357899999999999776554
No 469
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=71.35 E-value=4.5 Score=41.24 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=31.1
Q ss_pred eEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Q 004121 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (772)
Q Consensus 407 l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~erL~ 455 (772)
+..|.|+|||||||++..+..+ .+ +-++++.......+.+.+.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~---~g---~~~~~~~~~~~~~~~~~~g 45 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSN---YS---AVKYQLAGPIKDALAYAWG 45 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH---SC---EEECCTTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh---cC---CeEEecChHHHHHHHHHcc
Confidence 4578999999999987655432 12 3457888888888887765
No 470
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=71.26 E-value=2.4 Score=42.71 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=19.5
Q ss_pred CeEEEEccCCCchhhHHHHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L 429 (772)
.+..|.|++|||||+++..++..|
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHc
Confidence 467899999999999877766554
No 471
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=71.17 E-value=2.1 Score=42.92 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=23.9
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
..++.|.||.|+||||.+..+. -++.-..+.|.+.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~ 64 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILG-LLDAPTEGKVFLE 64 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEEC
Confidence 4688999999999998765443 3333333567664
No 472
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=70.74 E-value=2.5 Score=48.48 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=22.5
Q ss_pred CeEEEEccCCCchhhHHHHHHHHHHHcCCCcEE
Q 004121 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVL 438 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rIL 438 (772)
.+..|.|++|+||||++..+...+-..++.+|.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~ 402 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVT 402 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEE
Confidence 467899999999998776666555333222454
No 473
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=70.65 E-value=2.3 Score=39.59 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.7
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|+||+|||+.+..++
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999766553
No 474
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=70.44 E-value=2.3 Score=43.03 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=23.5
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
..++.|.||.|+||||.+..+.- ++.-..+.|.+-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~I~~~ 65 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA-EMDKVEGHVAIK 65 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT-CSEEEEEEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHhc-CCCCCCceEEEC
Confidence 46899999999999997765443 332223466553
No 475
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=70.42 E-value=2.2 Score=39.18 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=15.6
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999766554
No 476
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.34 E-value=2.3 Score=38.94 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=15.6
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|++|+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5789999999999766554
No 477
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=70.31 E-value=2.3 Score=42.50 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=24.5
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
..++.|.||.|+||||.+..+. -+++-..+.|.+-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~-Gl~~p~~G~I~~~g 70 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIS-TYLKPLKGEIIYNG 70 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEECC
Confidence 4688999999999999765543 33332335676643
No 478
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=70.14 E-value=2.3 Score=39.52 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=15.7
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|++|+|||+.+..++
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6889999999999765554
No 479
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=69.84 E-value=4.9 Score=44.67 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=34.7
Q ss_pred HHHHHHhhc---CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHH
Q 004121 396 VFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLA 451 (772)
Q Consensus 396 ~~AV~~aL~---~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ApSN~AVD~L~ 451 (772)
..|+...+. .....|.||.|+||||++..++.. .....+.|.++.....-+..+.
T Consensus 145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~-~~~~~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARY-TRADVIVVGLIGERGREVKDFI 202 (438)
T ss_dssp CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEESCCHHHHHHHH
T ss_pred ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcc-cCCCeEEEEEeceecHHHHHHH
Confidence 346666543 458899999999999986655544 3323345666665443444443
No 480
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=69.83 E-value=2.4 Score=42.81 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=24.4
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
..++.|.||.|+||||.+..+. -++.-..+.|.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~-Gl~~p~~G~I~~~g 66 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIG-CLDKPTEGEVYIDN 66 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETT
T ss_pred CCEEEEECCCCCcHHHHHHHHh-cCCCCCceEEEECC
Confidence 4689999999999998765433 33333345677643
No 481
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=69.80 E-value=2.4 Score=38.63 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=15.6
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|++|+|||+.+..++
T Consensus 7 i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999765544
No 482
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=69.58 E-value=2.4 Score=45.74 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=22.0
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHH
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~ 430 (772)
.++.+|.||-|+|||+++-++-+.+.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~~l~ 50 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFFALF 50 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 57999999999999999877776554
No 483
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=69.52 E-value=2.5 Score=38.84 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.5
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999765544
No 484
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=69.25 E-value=2.7 Score=42.91 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=24.2
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH-HHcCCCcEEEE
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM-AKQGQGQVLVC 440 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L-~~~~~~rILV~ 440 (772)
..++.|.||.|+||||.+..+.-.+ ..-..+.|.+.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 65 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLD 65 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEEC
Confidence 4688999999999999876555321 22223467664
No 485
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=68.99 E-value=2.6 Score=38.71 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.7
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|++|+|||+.+..++
T Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999766653
No 486
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=68.96 E-value=2.6 Score=39.01 Aligned_cols=19 Identities=32% Similarity=0.601 Sum_probs=15.4
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|+||+|||+.+..++
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 5799999999999765443
No 487
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=68.93 E-value=5.5 Score=49.19 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhc----CCeEEEEccCCCchhhHHHHHHH
Q 004121 393 ASQVFAVKSVLQ----RPISLIQGPPGTGKTVTSAAIVY 427 (772)
Q Consensus 393 ~sQ~~AV~~aL~----~~l~LIqGPPGTGKT~tla~iI~ 427 (772)
+...+.+...|. .+++.|.||+|.|||+.+.++..
T Consensus 134 e~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp HHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence 445556666553 36899999999999998877764
No 488
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=68.54 E-value=2.7 Score=38.51 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=15.6
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|++|+|||+.+..++
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999765544
No 489
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=68.40 E-value=2.7 Score=38.69 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=14.9
Q ss_pred EEEEccCCCchhhHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAI 425 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~i 425 (772)
.+|.|+||+|||+.+..+
T Consensus 5 i~ivG~~~~GKSsli~~l 22 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTF 22 (169)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578999999999976554
No 490
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=68.32 E-value=2.5 Score=40.08 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=17.3
Q ss_pred CeEEEEccCCCchhhHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI 426 (772)
.-.+|.|++|+|||+.+..++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999876654
No 491
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=68.26 E-value=2.8 Score=42.54 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=24.5
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
..++.|.||.|+||||.+..+. -+++-..+.|.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g 67 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIA-GLVRAQKGKIIFNG 67 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECC
Confidence 4688999999999999765544 33332335676643
No 492
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=68.20 E-value=2.7 Score=38.62 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=15.5
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|++|+|||+.+..++
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999765544
No 493
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=68.13 E-value=2.7 Score=43.21 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=24.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
..++.|.||.|+||||.+..+. -++.-..+.|.+-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~-Gl~~p~~G~i~~~ 66 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCIN-FLEKPSEGAIIVN 66 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEEC
Confidence 4688999999999999776544 3333233567664
No 494
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=67.99 E-value=2.8 Score=42.97 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=24.4
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
..++.|.||.|+||||.+..+. -++.-..+.|.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~-Gl~~p~~G~i~~~g 68 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVIT-GFLKADEGRVYFEN 68 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECC
Confidence 4688999999999999765544 33332335676643
No 495
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=67.88 E-value=2.8 Score=38.31 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=15.5
Q ss_pred EEEEccCCCchhhHHHHHH
Q 004121 408 SLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 408 ~LIqGPPGTGKT~tla~iI 426 (772)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999765554
No 496
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=67.88 E-value=2.8 Score=42.11 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=23.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEE
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~ 440 (772)
..++.|.||.|+||||.+..+.- +++-..+.|.+-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~ 68 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHS 68 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT-SSCCSEEEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHhC-CCcCCccEEEEC
Confidence 46889999999999998765443 333223466653
No 497
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=67.82 E-value=2.8 Score=38.95 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=16.9
Q ss_pred CeEEEEccCCCchhhHHHHHH
Q 004121 406 PISLIQGPPGTGKTVTSAAIV 426 (772)
Q Consensus 406 ~l~LIqGPPGTGKT~tla~iI 426 (772)
.-.+|.|++|+|||+.+..++
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999776553
No 498
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=67.81 E-value=3 Score=43.09 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=24.8
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHH-HHcCCCcEEEEc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHM-AKQGQGQVLVCA 441 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L-~~~~~~rILV~A 441 (772)
..++.|.||.|+||||.+..+.-.+ ..-..+.|.+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g 83 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 83 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence 4688999999999999876555432 111235677654
No 499
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=67.78 E-value=3.1 Score=47.23 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=29.2
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcC-C--CcEEEEcCc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQG-Q--GQVLVCAPS 443 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~-~--~rILV~ApS 443 (772)
.+..+|.|++|+|||+.+..++..|+... . -++.++=+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 47899999999999999999998876542 2 245555444
No 500
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=67.78 E-value=2.8 Score=42.69 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=24.8
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHHHHcCCCcEEEEc
Q 004121 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (772)
Q Consensus 405 ~~l~LIqGPPGTGKT~tla~iI~~L~~~~~~rILV~A 441 (772)
..++.|.||.|+||||.+..+. -++.-..+.|++-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~I~i~g 70 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQ-RFYIPENGQVLIDG 70 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECC
Confidence 4688999999999999765544 33332345777643
Done!